Query 013262
Match_columns 447
No_of_seqs 484 out of 2765
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:03:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474 Cl- channel CLC-7 and 100.0 7.3E-81 1.6E-85 626.6 25.7 406 14-445 355-761 (762)
2 KOG0475 Cl- channel CLC-3 and 100.0 1.2E-50 2.6E-55 409.6 17.1 350 16-430 328-694 (696)
3 PRK01862 putative voltage-gate 100.0 6E-44 1.3E-48 381.3 31.3 275 97-433 295-573 (574)
4 KOG0476 Cl- channel CLC-2 and 100.0 5.2E-40 1.1E-44 336.9 13.0 260 34-324 369-648 (931)
5 cd03684 ClC_3_like ClC-3-like 100.0 4.7E-29 1E-33 257.9 14.5 186 33-242 241-445 (445)
6 cd03685 ClC_6_like ClC-6-like 100.0 5E-28 1.1E-32 251.5 14.4 125 121-245 335-462 (466)
7 cd03683 ClC_1_like ClC-1-like 99.9 8.3E-26 1.8E-30 232.7 12.4 123 120-243 293-425 (426)
8 PRK01610 putative voltage-gate 99.9 5.9E-25 1.3E-29 225.6 17.3 137 97-237 277-417 (418)
9 cd01031 EriC ClC chloride chan 99.9 6.5E-25 1.4E-29 225.1 16.7 133 99-235 266-402 (402)
10 cd01036 ClC_euk Chloride chann 99.9 4E-25 8.7E-30 227.1 10.3 111 121-231 295-416 (416)
11 PF00654 Voltage_CLC: Voltage 99.9 1.9E-24 4.1E-29 218.1 13.1 162 23-224 190-355 (355)
12 PRK05277 chloride channel prot 99.9 4.2E-24 9.1E-29 221.3 15.7 135 99-237 279-417 (438)
13 COG0038 EriC Chloride channel 99.9 3.6E-23 7.7E-28 213.6 18.4 141 99-243 293-437 (443)
14 cd01034 EriC_like ClC chloride 99.9 1.7E-22 3.8E-27 206.2 13.1 124 99-231 266-390 (390)
15 cd01033 ClC_like Putative ClC 99.9 1.1E-21 2.3E-26 200.1 17.7 125 97-225 260-386 (388)
16 cd00400 Voltage_gated_ClC CLC 99.8 2.9E-20 6.3E-25 189.7 15.3 142 34-219 239-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 99.8 2.7E-20 5.8E-25 189.3 14.2 119 98-231 259-378 (378)
18 PRK03655 putative ion channel 99.7 6E-17 1.3E-21 165.9 13.7 115 98-223 280-398 (414)
19 COG2524 Predicted transcriptio 99.7 3.1E-16 6.7E-21 144.9 12.0 123 250-431 169-291 (294)
20 PRK11543 gutQ D-arabinose 5-ph 99.7 7.1E-16 1.5E-20 153.8 13.8 147 226-429 164-318 (321)
21 COG3448 CBS-domain-containing 99.7 4E-15 8.6E-20 139.9 17.0 135 251-436 243-377 (382)
22 PRK10892 D-arabinose 5-phospha 99.6 1.7E-15 3.7E-20 151.4 14.4 154 221-429 163-323 (326)
23 COG4109 Predicted transcriptio 99.6 4.4E-16 9.5E-21 149.5 7.8 151 208-432 157-307 (432)
24 cd04641 CBS_pair_28 The CBS do 99.5 1.9E-13 4.1E-18 115.7 13.3 118 264-428 2-119 (120)
25 cd04603 CBS_pair_KefB_assoc Th 99.5 2.6E-13 5.7E-18 113.3 12.4 109 264-428 2-110 (111)
26 cd04619 CBS_pair_6 The CBS dom 99.5 3.2E-13 6.9E-18 113.3 12.6 112 264-428 2-113 (114)
27 COG3620 Predicted transcriptio 99.5 2.9E-13 6.3E-18 116.6 11.7 122 251-431 63-184 (187)
28 PRK07807 inosine 5-monophospha 99.5 1.7E-13 3.6E-18 142.4 12.3 124 248-433 84-207 (479)
29 cd04618 CBS_pair_5 The CBS dom 99.5 4.1E-13 8.9E-18 110.1 11.6 96 264-428 2-97 (98)
30 PRK15094 magnesium/cobalt effl 99.5 3.7E-13 8.1E-18 132.0 13.2 133 250-438 64-196 (292)
31 TIGR03520 GldE gliding motilit 99.5 5.1E-13 1.1E-17 137.1 13.8 130 250-437 188-317 (408)
32 cd04600 CBS_pair_HPP_assoc Thi 99.4 1E-12 2.2E-17 111.4 11.9 121 264-428 3-123 (124)
33 cd04639 CBS_pair_26 The CBS do 99.4 1.2E-12 2.7E-17 108.7 11.9 109 264-428 2-110 (111)
34 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.5E-12 3.3E-17 109.1 12.3 113 264-428 2-114 (115)
35 cd04617 CBS_pair_4 The CBS dom 99.4 1.8E-12 3.9E-17 109.4 12.1 113 264-428 2-117 (118)
36 cd04596 CBS_pair_DRTGG_assoc T 99.4 1.5E-12 3.2E-17 108.0 10.9 105 264-428 3-107 (108)
37 cd04605 CBS_pair_MET2_assoc Th 99.4 4E-12 8.6E-17 105.4 13.5 107 264-428 3-109 (110)
38 cd04608 CBS_pair_PALP_assoc Th 99.4 9.1E-13 2E-17 112.7 9.8 112 264-429 3-123 (124)
39 PRK07107 inosine 5-monophospha 99.4 1E-12 2.3E-17 137.3 11.5 150 226-430 64-219 (502)
40 cd04623 CBS_pair_10 The CBS do 99.4 4.3E-12 9.3E-17 105.4 12.6 111 264-428 2-112 (113)
41 cd04614 CBS_pair_1 The CBS dom 99.4 3.9E-12 8.5E-17 103.7 12.0 94 264-428 2-95 (96)
42 cd04801 CBS_pair_M50_like This 99.4 3.4E-12 7.4E-17 106.7 11.7 109 264-428 2-113 (114)
43 cd04630 CBS_pair_17 The CBS do 99.4 4.6E-12 1E-16 106.0 12.3 112 264-428 2-113 (114)
44 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 5.9E-12 1.3E-16 104.0 12.8 106 264-428 3-108 (109)
45 cd04803 CBS_pair_15 The CBS do 99.4 3.7E-12 8E-17 107.7 11.8 120 264-428 2-121 (122)
46 TIGR01137 cysta_beta cystathio 99.4 3.2E-12 6.9E-17 133.5 13.8 148 224-430 305-453 (454)
47 cd04586 CBS_pair_BON_assoc Thi 99.4 2.4E-12 5.1E-17 111.3 10.7 132 264-428 3-134 (135)
48 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 5.1E-12 1.1E-16 104.1 12.1 104 264-428 2-105 (106)
49 cd04607 CBS_pair_NTP_transfera 99.4 6.3E-12 1.4E-16 105.0 12.6 110 264-428 3-112 (113)
50 cd04632 CBS_pair_19 The CBS do 99.4 6E-12 1.3E-16 107.6 12.7 126 264-428 2-127 (128)
51 cd04629 CBS_pair_16 The CBS do 99.4 4E-12 8.7E-17 106.0 11.1 112 264-428 2-113 (114)
52 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 5.8E-12 1.3E-16 104.8 11.9 112 264-428 2-113 (114)
53 cd04615 CBS_pair_2 The CBS dom 99.4 7.1E-12 1.5E-16 104.4 12.4 110 265-428 3-112 (113)
54 cd04624 CBS_pair_11 The CBS do 99.4 9E-12 2E-16 103.6 12.8 110 264-428 2-111 (112)
55 cd04627 CBS_pair_14 The CBS do 99.4 1.4E-11 3E-16 104.6 13.9 119 264-426 2-120 (123)
56 cd04588 CBS_pair_CAP-ED_DUF294 99.4 1.2E-11 2.6E-16 102.5 13.0 108 264-428 2-109 (110)
57 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 7.6E-12 1.6E-16 104.2 11.6 111 264-428 3-113 (114)
58 cd04636 CBS_pair_23 The CBS do 99.4 6.5E-12 1.4E-16 108.1 11.6 130 264-428 2-131 (132)
59 cd04595 CBS_pair_DHH_polyA_Pol 99.4 1.2E-11 2.6E-16 102.6 12.8 107 264-428 3-109 (110)
60 cd04631 CBS_pair_18 The CBS do 99.4 8.3E-12 1.8E-16 106.0 12.0 124 264-429 2-125 (125)
61 cd04642 CBS_pair_29 The CBS do 99.4 1.1E-11 2.4E-16 105.9 12.7 124 264-428 2-125 (126)
62 cd04635 CBS_pair_22 The CBS do 99.4 6.3E-12 1.4E-16 106.2 10.9 120 264-428 2-121 (122)
63 cd04643 CBS_pair_30 The CBS do 99.4 9E-12 1.9E-16 104.2 11.7 115 264-429 2-116 (116)
64 cd04626 CBS_pair_13 The CBS do 99.3 1E-11 2.3E-16 103.2 11.8 109 264-428 2-110 (111)
65 cd04591 CBS_pair_EriC_assoc_eu 99.3 1.4E-11 3.1E-16 102.1 12.5 102 264-428 3-104 (105)
66 cd04620 CBS_pair_7 The CBS dom 99.3 1.6E-11 3.5E-16 102.7 12.4 110 264-428 2-114 (115)
67 TIGR00400 mgtE Mg2+ transporte 99.3 5.8E-12 1.3E-16 131.1 11.8 127 250-438 128-259 (449)
68 cd04602 CBS_pair_IMPDH_2 This 99.3 1.5E-11 3.3E-16 103.0 11.7 109 264-428 3-113 (114)
69 cd04621 CBS_pair_8 The CBS dom 99.3 1.7E-11 3.6E-16 106.5 12.0 133 264-428 2-134 (135)
70 cd04585 CBS_pair_ACT_assoc2 Th 99.3 2E-11 4.4E-16 102.6 12.2 120 264-428 2-121 (122)
71 PLN02274 inosine-5'-monophosph 99.3 1.5E-11 3.2E-16 128.9 13.7 116 259-432 106-223 (505)
72 cd04622 CBS_pair_9 The CBS dom 99.3 2.6E-11 5.6E-16 100.9 12.6 111 264-428 2-112 (113)
73 PRK11573 hypothetical protein; 99.3 2.2E-10 4.8E-15 117.7 22.1 135 250-438 184-318 (413)
74 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 2.8E-11 6E-16 100.3 12.4 109 264-428 2-110 (111)
75 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 3.3E-11 7.1E-16 99.8 12.7 109 264-428 2-110 (111)
76 TIGR00393 kpsF KpsF/GutQ famil 99.3 1.5E-11 3.3E-16 119.4 12.3 114 252-422 154-268 (268)
77 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.3E-11 2.8E-16 128.2 12.5 122 249-433 84-205 (475)
78 cd04637 CBS_pair_24 The CBS do 99.3 2.8E-11 6.1E-16 102.3 12.4 121 264-429 2-122 (122)
79 cd04640 CBS_pair_27 The CBS do 99.3 1.9E-11 4.2E-16 104.4 11.5 118 264-428 2-125 (126)
80 cd04590 CBS_pair_CorC_HlyC_ass 99.3 3.9E-11 8.5E-16 99.6 12.9 109 264-428 2-110 (111)
81 cd04800 CBS_pair_CAP-ED_DUF294 99.3 3.3E-11 7.2E-16 100.0 12.3 109 264-428 2-110 (111)
82 cd04625 CBS_pair_12 The CBS do 99.3 4E-11 8.6E-16 99.7 12.7 110 264-428 2-111 (112)
83 cd04587 CBS_pair_CAP-ED_DUF294 99.3 2.7E-11 5.8E-16 100.8 11.7 111 264-428 2-112 (113)
84 cd04601 CBS_pair_IMPDH This cd 99.3 1.8E-11 4E-16 101.2 10.5 106 264-428 3-109 (110)
85 cd04589 CBS_pair_CAP-ED_DUF294 99.3 4.4E-11 9.5E-16 99.4 12.3 109 264-428 2-110 (111)
86 PRK05567 inosine 5'-monophosph 99.3 2.4E-11 5.3E-16 127.5 13.3 117 254-431 88-205 (486)
87 PTZ00314 inosine-5'-monophosph 99.3 1.6E-11 3.5E-16 128.5 11.9 120 254-431 97-218 (495)
88 TIGR01302 IMP_dehydrog inosine 99.3 2.2E-11 4.7E-16 126.6 12.8 120 253-430 80-200 (450)
89 cd00400 Voltage_gated_ClC CLC 99.3 2.9E-11 6.3E-16 123.6 13.0 100 125-225 84-186 (383)
90 cd04802 CBS_pair_3 The CBS dom 99.3 6.9E-11 1.5E-15 98.3 12.9 110 264-428 2-111 (112)
91 cd04599 CBS_pair_GGDEF_assoc2 99.3 4.5E-11 9.7E-16 98.1 11.4 103 264-428 2-104 (105)
92 cd02205 CBS_pair The CBS domai 99.3 7.9E-11 1.7E-15 96.7 12.5 111 264-428 2-112 (113)
93 cd04606 CBS_pair_Mg_transporte 99.3 4.1E-11 8.9E-16 99.4 10.5 102 268-429 2-108 (109)
94 PRK14869 putative manganese-de 99.3 3.4E-11 7.3E-16 128.7 12.6 162 253-432 68-305 (546)
95 cd04609 CBS_pair_PALP_assoc2 T 99.3 5.9E-11 1.3E-15 98.0 11.3 109 264-429 2-110 (110)
96 cd04594 CBS_pair_EriC_assoc_ar 99.3 7.7E-11 1.7E-15 97.0 11.8 100 266-428 4-103 (104)
97 COG0517 FOG: CBS domain [Gener 99.3 1.2E-10 2.5E-15 97.5 13.0 113 257-427 3-117 (117)
98 cd01031 EriC ClC chloride chan 99.3 4.4E-11 9.6E-16 123.0 12.6 120 100-225 65-187 (402)
99 cd04633 CBS_pair_20 The CBS do 99.2 7.8E-11 1.7E-15 99.3 11.7 119 264-428 2-120 (121)
100 cd04610 CBS_pair_ParBc_assoc T 99.2 9.7E-11 2.1E-15 96.4 11.6 104 264-428 3-106 (107)
101 cd04584 CBS_pair_ACT_assoc Thi 99.2 1.2E-10 2.6E-15 98.1 11.5 119 264-428 2-120 (121)
102 cd04598 CBS_pair_GGDEF_assoc T 99.2 2.3E-10 5E-15 96.2 12.1 113 264-428 2-118 (119)
103 cd04634 CBS_pair_21 The CBS do 99.2 2.9E-10 6.3E-15 99.5 12.4 136 264-428 2-142 (143)
104 cd04638 CBS_pair_25 The CBS do 99.2 3.3E-10 7.1E-15 93.3 11.7 104 264-428 2-105 (106)
105 COG2905 Predicted signal-trans 99.2 1.3E-10 2.9E-15 118.6 10.4 124 252-432 148-271 (610)
106 COG1253 TlyC Hemolysins and re 99.1 7E-10 1.5E-14 114.9 15.1 133 250-438 203-335 (429)
107 PRK05277 chloride channel prot 99.1 3.4E-10 7.4E-15 117.6 12.7 121 100-225 72-197 (438)
108 COG2239 MgtE Mg/Co/Ni transpor 99.1 3.9E-10 8.5E-15 115.7 9.8 127 252-440 131-262 (451)
109 COG4536 CorB Putative Mg2+ and 99.1 1.2E-09 2.6E-14 106.7 11.7 132 250-435 197-328 (423)
110 cd04592 CBS_pair_EriC_assoc_eu 99.0 4.1E-09 8.8E-14 91.5 10.8 116 264-408 2-117 (133)
111 cd03682 ClC_sycA_like ClC sycA 98.9 9.3E-09 2E-13 104.9 12.7 99 126-225 78-180 (378)
112 PF00571 CBS: CBS domain CBS d 98.9 3.4E-09 7.4E-14 77.5 6.7 55 372-431 2-56 (57)
113 COG4535 CorC Putative Mg2+ and 98.8 1.1E-08 2.3E-13 94.1 6.9 129 251-435 65-193 (293)
114 PRK01862 putative voltage-gate 98.8 5.4E-08 1.2E-12 104.7 13.1 99 126-225 118-219 (574)
115 PF00654 Voltage_CLC: Voltage 98.8 5.3E-08 1.1E-12 98.6 12.2 100 126-225 41-143 (355)
116 PF00571 CBS: CBS domain CBS d 98.8 2E-08 4.3E-13 73.3 6.3 55 255-322 1-55 (57)
117 COG0038 EriC Chloride channel 98.7 9.3E-08 2E-12 99.3 12.9 119 101-225 93-215 (443)
118 PRK01610 putative voltage-gate 98.7 9E-08 2E-12 98.8 10.7 98 126-225 100-200 (418)
119 KOG1764 5'-AMP-activated prote 98.7 2.3E-07 5E-12 94.2 12.9 128 264-437 238-365 (381)
120 cd01036 ClC_euk Chloride chann 98.6 8.9E-08 1.9E-12 98.9 9.1 100 126-225 88-202 (416)
121 cd03685 ClC_6_like ClC-6-like 98.6 5.1E-08 1.1E-12 102.0 7.0 122 99-224 105-242 (466)
122 cd01034 EriC_like ClC chloride 98.6 3.6E-07 7.9E-12 93.6 11.9 100 126-225 80-182 (390)
123 cd01033 ClC_like Putative ClC 98.6 2.1E-07 4.6E-12 95.2 10.1 97 128-225 87-186 (388)
124 KOG2550 IMP dehydrogenase/GMP 98.5 2.3E-07 5.1E-12 91.5 8.5 119 264-441 117-235 (503)
125 TIGR01186 proV glycine betaine 98.5 1.5E-06 3.3E-11 87.9 13.7 109 265-433 252-360 (363)
126 cd03684 ClC_3_like ClC-3-like 98.5 7.2E-07 1.6E-11 92.9 10.9 100 126-225 79-183 (445)
127 PRK10070 glycine betaine trans 98.5 1.6E-06 3.5E-11 88.8 13.0 121 253-433 274-395 (400)
128 COG3448 CBS-domain-containing 98.3 5.9E-07 1.3E-11 85.3 5.1 57 369-430 245-301 (382)
129 PRK03655 putative ion channel 98.3 5.3E-06 1.1E-10 85.5 12.2 97 126-225 100-203 (414)
130 cd03683 ClC_1_like ClC-1-like 98.3 6.2E-07 1.3E-11 92.9 5.1 99 126-224 96-202 (426)
131 cd04597 CBS_pair_DRTGG_assoc2 98.2 3.4E-06 7.3E-11 70.8 6.6 54 253-319 58-111 (113)
132 TIGR00400 mgtE Mg2+ transporte 98.1 1.2E-06 2.5E-11 91.5 2.6 113 253-432 195-307 (449)
133 PRK14869 putative manganese-de 98.1 9.6E-07 2.1E-11 94.5 0.4 160 235-429 222-391 (546)
134 cd04597 CBS_pair_DRTGG_assoc2 98.0 9.9E-06 2.1E-10 67.9 5.8 55 369-428 58-112 (113)
135 cd04603 CBS_pair_KefB_assoc Th 97.9 2.1E-05 4.6E-10 65.2 5.9 55 253-320 56-110 (111)
136 COG3620 Predicted transcriptio 97.9 1.7E-05 3.7E-10 69.0 4.7 61 368-434 64-124 (187)
137 COG2524 Predicted transcriptio 97.9 2.6E-05 5.6E-10 73.1 5.9 59 252-323 233-291 (294)
138 cd04619 CBS_pair_6 The CBS dom 97.8 2.8E-05 6.1E-10 64.7 5.6 56 252-320 58-113 (114)
139 cd04641 CBS_pair_28 The CBS do 97.7 9.9E-05 2.1E-09 61.9 7.1 49 378-431 2-50 (120)
140 cd04618 CBS_pair_5 The CBS dom 97.7 0.0001 2.2E-09 60.0 6.2 48 379-430 3-50 (98)
141 cd04607 CBS_pair_NTP_transfera 97.6 0.00011 2.4E-09 60.8 5.9 54 253-319 58-111 (113)
142 smart00116 CBS Domain in cysta 97.6 0.00018 3.8E-09 49.0 6.0 46 379-429 2-47 (49)
143 cd04600 CBS_pair_HPP_assoc Thi 97.6 9.6E-05 2.1E-09 62.1 5.3 56 252-320 68-123 (124)
144 cd04592 CBS_pair_EriC_assoc_eu 97.6 0.00023 4.9E-09 61.6 7.4 50 378-432 2-51 (133)
145 cd04620 CBS_pair_7 The CBS dom 97.6 0.00013 2.9E-09 60.4 5.6 55 253-320 58-114 (115)
146 cd04606 CBS_pair_Mg_transporte 97.6 0.00014 3E-09 59.8 5.6 57 252-321 52-108 (109)
147 cd04614 CBS_pair_1 The CBS dom 97.5 0.00026 5.7E-09 57.2 6.7 47 378-429 2-48 (96)
148 cd04585 CBS_pair_ACT_assoc2 Th 97.5 0.00019 4.1E-09 59.8 5.9 57 251-320 65-121 (122)
149 cd04627 CBS_pair_14 The CBS do 97.5 0.00021 4.5E-09 60.2 6.2 52 255-319 70-121 (123)
150 PRK05567 inosine 5'-monophosph 97.5 0.0003 6.5E-09 74.2 8.6 57 253-322 147-204 (486)
151 cd04596 CBS_pair_DRTGG_assoc T 97.5 0.00019 4.2E-09 58.8 5.7 56 252-320 52-107 (108)
152 cd04615 CBS_pair_2 The CBS dom 97.5 0.00022 4.9E-09 58.7 6.0 55 252-319 57-111 (113)
153 cd04608 CBS_pair_PALP_assoc Th 97.5 0.0005 1.1E-08 58.4 7.9 51 377-432 2-52 (124)
154 cd04625 CBS_pair_12 The CBS do 97.5 0.00026 5.7E-09 58.2 6.0 54 253-320 58-111 (112)
155 cd04604 CBS_pair_KpsF_GutQ_ass 97.5 0.00026 5.7E-09 58.3 6.0 55 253-320 59-113 (114)
156 cd04630 CBS_pair_17 The CBS do 97.5 0.00022 4.8E-09 59.1 5.4 55 252-320 59-113 (114)
157 cd04610 CBS_pair_ParBc_assoc T 97.5 0.00027 5.8E-09 57.6 5.8 55 253-320 52-106 (107)
158 cd04587 CBS_pair_CAP-ED_DUF294 97.4 0.00019 4E-09 59.2 4.7 55 253-320 58-112 (113)
159 cd04635 CBS_pair_22 The CBS do 97.4 0.00024 5.3E-09 59.4 5.2 57 251-320 65-121 (122)
160 cd04611 CBS_pair_PAS_GGDEF_DUF 97.4 0.00033 7.2E-09 57.4 5.9 56 252-320 55-110 (111)
161 cd04803 CBS_pair_15 The CBS do 97.4 0.00036 7.8E-09 58.4 6.1 57 251-320 65-121 (122)
162 cd04583 CBS_pair_ABC_OpuCA_ass 97.4 0.00035 7.5E-09 57.0 5.8 55 253-320 54-108 (109)
163 cd04639 CBS_pair_26 The CBS do 97.4 0.00031 6.6E-09 57.7 5.4 55 253-320 56-110 (111)
164 PRK07107 inosine 5-monophospha 97.4 0.00033 7.2E-09 73.8 6.9 59 252-321 160-218 (502)
165 cd04582 CBS_pair_ABC_OpuCA_ass 97.4 0.00042 9.2E-09 56.4 6.1 54 254-320 52-105 (106)
166 cd04602 CBS_pair_IMPDH_2 This 97.4 0.00035 7.6E-09 57.9 5.7 55 253-320 57-113 (114)
167 cd04621 CBS_pair_8 The CBS dom 97.4 0.00043 9.2E-09 59.8 6.3 55 252-320 80-134 (135)
168 smart00116 CBS Domain in cysta 97.4 0.00055 1.2E-08 46.5 5.7 47 265-322 2-48 (49)
169 cd04605 CBS_pair_MET2_assoc Th 97.4 0.00073 1.6E-08 55.3 7.4 50 377-431 2-51 (110)
170 cd04624 CBS_pair_11 The CBS do 97.3 0.00072 1.6E-08 55.6 7.3 50 378-432 2-51 (112)
171 cd04613 CBS_pair_SpoIVFB_EriC_ 97.3 0.00038 8.2E-09 57.2 5.6 56 252-320 57-113 (114)
172 cd04622 CBS_pair_9 The CBS dom 97.3 0.00033 7.1E-09 57.7 5.2 55 253-320 58-112 (113)
173 PRK11543 gutQ D-arabinose 5-ph 97.3 0.00032 7E-09 69.9 6.1 59 368-431 196-256 (321)
174 cd04631 CBS_pair_18 The CBS do 97.3 0.00034 7.4E-09 58.8 5.3 56 252-320 69-124 (125)
175 cd04801 CBS_pair_M50_like This 97.3 0.00029 6.4E-09 58.3 4.8 58 252-320 56-113 (114)
176 cd04802 CBS_pair_3 The CBS dom 97.3 0.00046 9.9E-09 56.8 5.9 54 252-319 57-110 (112)
177 cd04595 CBS_pair_DHH_polyA_Pol 97.3 0.00047 1E-08 56.5 6.0 54 252-319 55-108 (110)
178 cd04623 CBS_pair_10 The CBS do 97.3 0.00081 1.8E-08 55.1 7.4 50 378-432 2-51 (113)
179 PRK10892 D-arabinose 5-phospha 97.3 0.00037 8.1E-09 69.7 6.3 59 368-431 201-261 (326)
180 cd04643 CBS_pair_30 The CBS do 97.3 0.0007 1.5E-08 56.0 7.0 49 378-431 2-50 (116)
181 cd04586 CBS_pair_BON_assoc Thi 97.3 0.0003 6.4E-09 60.4 4.8 55 252-320 80-134 (135)
182 cd04588 CBS_pair_CAP-ED_DUF294 97.3 0.00045 9.8E-09 56.6 5.7 54 253-319 55-108 (110)
183 cd04617 CBS_pair_4 The CBS dom 97.3 0.00088 1.9E-08 55.9 7.5 49 378-431 2-50 (118)
184 cd04601 CBS_pair_IMPDH This cd 97.3 0.00044 9.6E-09 56.5 5.4 56 252-320 53-109 (110)
185 cd04593 CBS_pair_EriC_assoc_ba 97.3 0.00098 2.1E-08 55.2 7.3 49 378-431 2-50 (115)
186 cd04632 CBS_pair_19 The CBS do 97.3 0.001 2.2E-08 56.3 7.4 48 378-430 2-49 (128)
187 PRK07807 inosine 5-monophospha 97.3 0.00057 1.2E-08 71.7 6.9 59 253-324 148-206 (479)
188 cd04589 CBS_pair_CAP-ED_DUF294 97.2 0.00066 1.4E-08 55.8 5.9 55 252-320 56-110 (111)
189 cd04629 CBS_pair_16 The CBS do 97.2 0.00047 1E-08 56.8 4.9 55 252-320 59-113 (114)
190 cd04800 CBS_pair_CAP-ED_DUF294 97.2 0.00056 1.2E-08 56.1 5.3 55 252-320 56-110 (111)
191 PLN02274 inosine-5'-monophosph 97.2 0.00067 1.4E-08 71.7 7.0 62 252-324 162-223 (505)
192 cd04642 CBS_pair_29 The CBS do 97.2 0.00076 1.6E-08 57.1 6.2 52 256-320 74-125 (126)
193 cd04612 CBS_pair_SpoIVFB_EriC_ 97.2 0.00077 1.7E-08 55.2 6.0 55 253-320 56-110 (111)
194 COG0517 FOG: CBS domain [Gener 97.2 0.00074 1.6E-08 55.8 5.9 52 254-318 63-116 (117)
195 cd04594 CBS_pair_EriC_assoc_ar 97.2 0.00062 1.3E-08 55.5 5.3 53 254-320 51-103 (104)
196 cd04633 CBS_pair_20 The CBS do 97.2 0.0006 1.3E-08 56.9 5.3 56 251-320 65-120 (121)
197 TIGR01303 IMP_DH_rel_1 IMP deh 97.2 0.0007 1.5E-08 70.9 6.9 59 253-324 146-204 (475)
198 cd04599 CBS_pair_GGDEF_assoc2 97.2 0.00077 1.7E-08 54.6 5.7 53 253-319 51-103 (105)
199 TIGR01137 cysta_beta cystathio 97.2 0.00076 1.6E-08 70.6 7.1 60 368-432 334-393 (454)
200 cd04636 CBS_pair_23 The CBS do 97.2 0.00084 1.8E-08 57.3 6.2 55 252-320 77-131 (132)
201 cd04591 CBS_pair_EriC_assoc_eu 97.2 0.00071 1.5E-08 55.6 5.5 49 258-320 56-104 (105)
202 cd04626 CBS_pair_13 The CBS do 97.2 0.00081 1.8E-08 55.2 5.6 53 253-319 57-109 (111)
203 cd04640 CBS_pair_27 The CBS do 97.1 0.0013 2.7E-08 55.7 6.7 46 378-428 2-47 (126)
204 cd04637 CBS_pair_24 The CBS do 97.1 0.0009 1.9E-08 56.0 5.7 55 253-320 67-121 (122)
205 cd04590 CBS_pair_CorC_HlyC_ass 97.1 0.0016 3.4E-08 53.4 6.9 50 378-432 2-52 (111)
206 cd04584 CBS_pair_ACT_assoc Thi 97.1 0.001 2.2E-08 55.4 5.8 56 251-320 65-120 (121)
207 cd02205 CBS_pair The CBS domai 97.1 0.0022 4.9E-08 51.8 7.6 51 378-433 2-52 (113)
208 TIGR00393 kpsF KpsF/GutQ famil 97.1 0.00086 1.9E-08 64.9 5.8 59 368-431 154-213 (268)
209 KOG1764 5'-AMP-activated prote 97.1 0.0044 9.6E-08 63.2 11.2 133 264-440 163-295 (381)
210 COG4109 Predicted transcriptio 97.1 0.0011 2.5E-08 64.9 6.3 61 251-324 247-307 (432)
211 COG2905 Predicted signal-trans 96.9 0.0015 3.2E-08 67.9 5.7 61 370-435 150-210 (610)
212 cd04609 CBS_pair_PALP_assoc2 T 96.9 0.003 6.5E-08 51.4 6.6 49 378-432 2-50 (110)
213 TIGR01302 IMP_dehydrog inosine 96.9 0.0026 5.7E-08 66.4 7.5 58 368-428 79-137 (450)
214 cd04598 CBS_pair_GGDEF_assoc T 96.8 0.0025 5.5E-08 52.9 5.8 56 252-320 60-118 (119)
215 PTZ00314 inosine-5'-monophosph 96.8 0.0018 3.8E-08 68.4 5.8 60 252-322 158-217 (495)
216 TIGR03520 GldE gliding motilit 96.8 0.0023 5E-08 66.1 6.5 58 370-431 192-251 (408)
217 cd04638 CBS_pair_25 The CBS do 96.6 0.0042 9.1E-08 50.5 5.7 53 254-320 53-105 (106)
218 COG4175 ProV ABC-type proline/ 96.6 0.0038 8.3E-08 60.9 5.9 50 377-432 335-384 (386)
219 cd04634 CBS_pair_21 The CBS do 96.6 0.0045 9.8E-08 53.7 6.0 54 252-319 88-141 (143)
220 PRK15094 magnesium/cobalt effl 96.6 0.0046 9.9E-08 60.9 6.3 58 369-430 67-126 (292)
221 TIGR03415 ABC_choXWV_ATP choli 96.5 0.0082 1.8E-07 61.3 8.3 49 376-431 332-380 (382)
222 COG2239 MgtE Mg/Co/Ni transpor 96.3 0.005 1.1E-07 63.8 5.2 60 252-324 195-254 (451)
223 TIGR01186 proV glycine betaine 96.1 0.012 2.7E-07 59.7 6.7 57 254-324 303-359 (363)
224 KOG0474 Cl- channel CLC-7 and 95.4 0.0087 1.9E-07 62.9 2.3 97 127-223 190-301 (762)
225 PRK10070 glycine betaine trans 95.1 0.047 1E-06 56.2 6.6 57 254-324 338-394 (400)
226 PRK11573 hypothetical protein; 94.7 0.086 1.9E-06 54.5 7.2 57 370-430 188-246 (413)
227 KOG2550 IMP dehydrogenase/GMP 94.2 0.051 1.1E-06 54.6 4.2 57 252-321 170-226 (503)
228 COG1253 TlyC Hemolysins and re 93.7 0.15 3.2E-06 53.1 6.7 60 370-433 207-268 (429)
229 KOG0476 Cl- channel CLC-2 and 92.8 0.089 1.9E-06 56.7 3.4 68 367-437 586-653 (931)
230 KOG0475 Cl- channel CLC-3 and 90.8 0.092 2E-06 55.5 0.9 100 126-225 181-285 (696)
231 TIGR03415 ABC_choXWV_ATP choli 89.2 0.83 1.8E-05 46.7 6.3 53 255-323 328-380 (382)
232 KOG2118 Predicted membrane pro 86.9 0.87 1.9E-05 48.2 4.9 134 250-438 201-335 (498)
233 COG4535 CorC Putative Mg2+ and 86.8 0.19 4.1E-06 47.1 -0.1 59 371-433 69-129 (293)
234 COG4175 ProV ABC-type proline/ 83.6 2.3 5E-05 42.1 5.6 49 264-324 336-384 (386)
235 COG1125 OpuBA ABC-type proline 80.1 3.5 7.5E-05 39.7 5.3 41 384-429 268-308 (309)
236 COG4536 CorB Putative Mg2+ and 73.4 5.8 0.00012 40.0 5.0 55 257-322 269-323 (423)
237 COG1125 OpuBA ABC-type proline 59.3 15 0.00032 35.6 4.5 60 250-320 246-307 (309)
238 PF04550 Phage_holin_2: Phage 54.0 71 0.0015 25.4 6.8 51 134-186 23-73 (89)
239 COG2216 KdpB High-affinity K+ 51.8 14 0.0003 38.9 3.3 50 386-441 413-462 (681)
240 KOG4267 Predicted membrane pro 51.3 23 0.00049 29.3 3.8 45 147-191 28-74 (110)
241 PF07456 Hpre_diP_synt_I: Hept 44.8 2.2E+02 0.0047 25.1 9.5 41 117-163 40-80 (148)
242 KOG4112 Signal peptidase subun 38.5 59 0.0013 26.1 4.2 18 149-166 31-48 (101)
243 TIGR02865 spore_II_E stage II 37.6 2.8E+02 0.006 31.3 11.0 83 152-235 197-289 (764)
244 PF12732 YtxH: YtxH-like prote 35.9 36 0.00079 25.9 2.7 21 146-166 1-21 (74)
245 PRK11388 DNA-binding transcrip 35.7 60 0.0013 35.6 5.4 146 226-422 13-162 (638)
246 COG3158 Kup K+ transporter [In 31.6 1.4E+02 0.0031 32.1 6.9 117 100-225 33-165 (627)
247 COG5336 Uncharacterized protei 29.7 1.1E+02 0.0023 25.5 4.4 39 150-189 56-94 (116)
248 COG4129 Predicted membrane pro 29.3 2.1E+02 0.0045 28.7 7.5 47 190-237 108-159 (332)
249 COG3610 Uncharacterized conser 28.1 3.6E+02 0.0078 23.9 8.0 66 137-203 52-126 (156)
250 COG4769 Predicted membrane pro 26.9 4.7E+02 0.01 23.6 8.2 42 116-163 51-92 (181)
251 COG2370 HupE Hydrogenase/ureas 24.7 4.3E+02 0.0093 24.3 7.8 80 121-203 51-132 (201)
252 PF14150 YesK: YesK-like prote 24.7 1.7E+02 0.0036 23.0 4.6 24 141-164 57-80 (81)
253 TIGR02359 thiW thiW protein. L 22.6 4.4E+02 0.0095 23.5 7.5 108 89-222 36-145 (160)
254 PF14044 NETI: NETI protein 22.1 95 0.0021 22.5 2.5 25 381-407 3-27 (57)
255 PF06946 Phage_holin_5: Phage 21.1 1.6E+02 0.0035 23.7 3.9 17 145-161 34-52 (93)
256 PRK11404 putative PTS system 21.1 1.4E+02 0.003 31.7 4.7 77 137-232 393-469 (482)
257 PF04226 Transgly_assoc: Trans 21.0 2.5E+02 0.0055 19.5 4.5 34 151-184 5-40 (48)
258 PF07869 DUF1656: Protein of u 20.5 1E+02 0.0022 22.4 2.5 24 143-166 6-29 (58)
No 1
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-81 Score=626.57 Aligned_cols=406 Identities=61% Similarity=0.975 Sum_probs=373.5
Q ss_pred hhcccceeeEeeehhcccCCcchHHHHHHHHHHHHHhHcchhhhhcCCCCCCCCCC-CCCCCCCCCCcccccCCCCCcch
Q 013262 14 KAENHSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPTNGRSGNFKQFNCPNGHYND 92 (447)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~t~~~~~~~~~~~~c~~~~~~~~~-~c~~~~~~~~~~~~~c~~~~y~~ 92 (447)
|.+|.+.+.+..+ ++++|.+|++|+++|+++|++++|.+|++..|+||+.+..+ .||+ |+||+|+|||
T Consensus 355 N~Ln~~~~~~r~~--~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~---------f~Cp~~~YNd 423 (762)
T KOG0474|consen 355 NYLNLKKVLRRYN--YEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPT---------FFCPDGEYND 423 (762)
T ss_pred HHHHHHHHHHHHh--ccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCcc---------ccCCCCchhH
Confidence 5566666655555 89999999999999999999999999999999999876443 6764 9999999999
Q ss_pred hHHhhcCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcch
Q 013262 93 LATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQ 172 (447)
Q Consensus 93 l~~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~ 172 (447)
||+|||++++++|++|||.++ ++|...+|++|++.+++++++|||+.+|.|+|+|++++||++||++|.++.....++|
T Consensus 424 lAtL~fnt~ddaVrnLFh~~~-~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~~id~ 502 (762)
T KOG0474|consen 424 LATLFFNTNDDAVRNLFHSPT-NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYTNIDP 502 (762)
T ss_pred HHHHHcCCcHHHHHHHhcCCC-CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhhccCc
Confidence 999999999999999999987 9999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCCCCCCccccc
Q 013262 173 GLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRT 252 (447)
Q Consensus 173 ~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~~~~~~~l~~ 252 (447)
|.||++||||+|||++||++|.+||++|+| +..+++|+|++.++|+||+|.|+++|||.+++.||+|+++|++++.+++
T Consensus 503 G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~ 581 (762)
T KOG0474|consen 503 GLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRN 581 (762)
T ss_pred hHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhh
Confidence 999999999999999999999999999999 7888999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 332 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~ 332 (447)
++|+|+|++ ++++++..++++.+.++|+++.||+|||||+... ++.+++.|+|.|++|..+|++++|.++..
T Consensus 582 L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~------~~~~~l~GlILRshl~vlL~~~~f~~~~~ 653 (762)
T KOG0474|consen 582 LTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPS------NEAGRLHGLILRSHLLVLLKKRVFVEESR 653 (762)
T ss_pred hhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCC------ccchhhhHHHHHHHHHHHHHhhhhhccCc
Confidence 999999999 9999999999999999999999999999998621 12268999999999999999999886654
Q ss_pred cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262 333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 412 (447)
Q Consensus 333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~ 412 (447)
....+...+..+.+|+.+...+++|+.+++++.+.++|+.++|+++|++|.+++++.+++.+|++.|+||+.||++
T Consensus 654 ~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~---- 729 (762)
T KOG0474|consen 654 STFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK---- 729 (762)
T ss_pred cccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC----
Confidence 4444444567888999998889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcEEEEEeHHHHHHHHHhhhcCccccccccC
Q 013262 413 GVSPVVGILTRQDLRAFNILTAFPHLERSKSGQ 445 (447)
Q Consensus 413 g~~~lvGIITr~DLl~~~~~~~~~~~~~~~~~~ 445 (447)
.++++|++||+|+.++...+..++..+.+.++
T Consensus 730 -~~~~~gilTR~D~~~~~~l~~~~~v~~~~~~~ 761 (762)
T KOG0474|consen 730 -TNRVVGILTRKDLARYRILGLEPHVDELKMGK 761 (762)
T ss_pred -CCceeEEEehhhhhhHHHhccccccccccccc
Confidence 66789999999999999888888887776654
No 2
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-50 Score=409.61 Aligned_cols=350 Identities=26% Similarity=0.414 Sum_probs=269.4
Q ss_pred cccceeeEeeehhcccCCcchHHHHHHHHHHHHHhHcchhhhhcC-CCCCCCCCCCCCCCCCCCCcccccCCCCCcchhH
Q 013262 16 ENHSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADC-KACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLA 94 (447)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~t~~~~~~~~~~~~c-~~~~~~~~~~c~~~~~~~~~~~~~c~~~~y~~l~ 94 (447)
.-+.++|+++|.. +...++++|+++++++|+.++|++|+++.- .+.-..++++|+..+..+ .|..--|
T Consensus 328 r~n~~~~~~rK~~--~lg~~pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~~s~~-----l~~~~~~---- 396 (696)
T KOG0475|consen 328 RLNIRFCRFRKSS--KLGKFPVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSPSSSTS-----LPETTVY---- 396 (696)
T ss_pred HHHHHHHhccchh--hccCCcchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCccccc-----CcccchH----
Confidence 3455678888877 566789999999999999999999998632 111122455665432221 1111011
Q ss_pred HhhcCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc-------
Q 013262 95 TLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY------- 167 (447)
Q Consensus 95 ~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~------- 167 (447)
-..+.|++.+++|+++|++|+|+++|+|+|+|||++||++||++|.++.+.
T Consensus 397 ----------------------~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~ 454 (696)
T KOG0475|consen 397 ----------------------SAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFN 454 (696)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 014467777889999999999999999999999999999999999776652
Q ss_pred ----CCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhhCCCCC
Q 013262 168 ----TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKGLPFL 242 (447)
Q Consensus 168 ----~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~kg~p~l 242 (447)
.++.||+||++||||.|+|++|+|+|.+|||||+||++.+++|+|+|+++|+|+++.+ ..+|||.++++||+||+
T Consensus 455 ~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l 534 (696)
T KOG0475|consen 455 LFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFL 534 (696)
T ss_pred ccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCc
Confidence 3588999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred CCCCCcccccccccccccCC---CCeeEecCC-CCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHH
Q 013262 243 DAHPEPWMRTLTVGELIDAK---PPVITLSGI-EKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHL 318 (447)
Q Consensus 243 ~~~~~~~l~~l~v~diM~~~---~~vv~l~~~-~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL 318 (447)
+.+.+.. +.-..++|.+. +...+++.+ ++++|+..+|+++++++||||-++ ++++++|+|.++|+
T Consensus 535 ~~k~e~~--~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~---------~sq~lvGfv~rr~l 603 (696)
T KOG0475|consen 535 DSKSEFS--STLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE---------DSQRLVGFVLRRNL 603 (696)
T ss_pred ccccccc--cchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcc---------ccceeEEEEchHHH
Confidence 7765543 33355666652 135555554 899999999999999999998765 45899999999999
Q ss_pred HHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHc
Q 013262 319 VLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQV 398 (447)
Q Consensus 319 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~ 398 (447)
...+.+..-.++.. . ..+ ..+.++. .....+.+..++++++|+.+|++|..++|++.++++|++.
T Consensus 604 ~~~i~~ar~~q~~~-------~-~~~-~~f~~~~------~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~l 668 (696)
T KOG0475|consen 604 FLAILNARKIQSFI-------V-TTS-IYFNDPS------PSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKL 668 (696)
T ss_pred HHHHhhhccccccc-------e-ecc-cccCCCC------ccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhh
Confidence 87665421111000 0 000 0111110 1111123456889999999999999999999999999999
Q ss_pred CCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262 399 GLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 430 (447)
Q Consensus 399 gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~ 430 (447)
|++++.|.+ +|++.|+||++|+++..
T Consensus 669 g~~~~~v~~------~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 669 GLRQILVTK------NGILLGIITKKDCLRHT 694 (696)
T ss_pred CceEEEEcc------CCeeEeeeehHHHHHhh
Confidence 999998875 46799999999999864
No 3
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=6e-44 Score=381.31 Aligned_cols=275 Identities=18% Similarity=0.246 Sum_probs=238.3
Q ss_pred hcCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCC---cchH
Q 013262 97 LLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTN---IDQG 173 (447)
Q Consensus 97 ~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~---~~~~ 173 (447)
++++|++.++.+++. .+.+..++.++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++...+ ..|+
T Consensus 295 ~~g~G~~~i~~~~~~----~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~ 370 (574)
T PRK01862 295 VWGNGYSVVNTILHA----PWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGHTSAPF 370 (574)
T ss_pred HhcCCHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCcccchH
Confidence 356788899998864 356778888899999999999999999999999999999999999999876322 4577
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhhCCCCCCCCCCccccc
Q 013262 174 LYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKGLPFLDAHPEPWMRT 252 (447)
Q Consensus 174 ~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~kg~p~l~~~~~~~l~~ 252 (447)
.|+++||||+++|++|+|++++++++|+|+++.+++|+|+++++|+++++.+ ++++|+.++++++.+ .+...++.
T Consensus 371 ~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~----~~~~~L~~ 446 (574)
T PRK01862 371 AYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDE----AERERLRT 446 (574)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcccc----chhhHHhh
Confidence 8999999999999999999999999999999999999999999999999999 899999999988642 24556888
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 332 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~ 332 (447)
++|+|+|++ +..+++++++++|+.+.+++++++.+||+|++ ++++|+|+.+|+.+.+.+.. +
T Consensus 447 ~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-----------g~lvGiVt~~dL~~~l~~~~---~-- 508 (574)
T PRK01862 447 TQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-----------GRFRGAVALKDITSDLLDKR---D-- 508 (574)
T ss_pred CcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-----------CeEEEEEEHHHHHHHhhccc---c--
Confidence 999999998 88899999999999999999999999999987 89999999999976443211 0
Q ss_pred cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262 333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 412 (447)
Q Consensus 333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~ 412 (447)
....++.++|++++.++++|+++.+++++|.+.+.+++||+|+ +
T Consensus 509 ---------------------------------~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~---~ 552 (574)
T PRK01862 509 ---------------------------------TTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVES---E 552 (574)
T ss_pred ---------------------------------cccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC---C
Confidence 0012345677888899999999999999999999999999987 3
Q ss_pred CCCcEEEEEeHHHHHHHHHhh
Q 013262 413 GVSPVVGILTRQDLRAFNILT 433 (447)
Q Consensus 413 g~~~lvGIITr~DLl~~~~~~ 433 (447)
++++++|+||++|+++++.+.
T Consensus 553 ~~~~liGvIt~~DIl~~l~~~ 573 (574)
T PRK01862 553 ASPTLAGVVYKTSLLDAYRRM 573 (574)
T ss_pred CCCeEEEEEEHHHHHHHHHhh
Confidence 336899999999999988653
No 4
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-40 Score=336.93 Aligned_cols=260 Identities=27% Similarity=0.455 Sum_probs=207.8
Q ss_pred cchHHHHHHHHHHHHHhHcchhhhh-cCCCCC-----CCCCCCCCCCCCCCCcccccCCCCCcchhHHhhcCChHHHHHH
Q 013262 34 MHKLLLALSVSVFTSVCQYCLPFLA-DCKACD-----PSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRN 107 (447)
Q Consensus 34 ~~~~~e~~~v~~~t~~~~~~~~~~~-~c~~~~-----~~~~~~c~~~~~~~~~~~~~c~~~~y~~l~~l~~~~~~~~i~~ 107 (447)
.+|++-..+++++.+++.|++.+-. ....+. .+.+.+|.= .... +..-.||.+.+.. +
T Consensus 369 k~~llyp~~~a~v~ssltfP~GlG~f~aG~l~f~etl~~fF~Nctw-~~~~-~~~~~~~~~~~~h----W---------- 432 (931)
T KOG0476|consen 369 KSRLLYPAFIALVFSSLTFPPGLGQFLAGRLSFRETLVDFFDNCTW-WVQT-NDSELCPAHILTH----W---------- 432 (931)
T ss_pred hCccHHHHHHHHHHhheecCCcccccccccccHHhHHHHHhhcCee-eecC-CCcCCCChhhhhh----h----------
Confidence 3577888999999999999987532 111111 123445530 0000 1112344332211 0
Q ss_pred HhcCCCCCC-cchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc-----------CCcchHHH
Q 013262 108 IFSSNTPTE-FQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-----------TNIDQGLY 175 (447)
Q Consensus 108 l~~~~~~~~-~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~-----------~~~~~~~~ 175 (447)
.+ +.+. -.+.+|++++++||++++++..+.+|+|+|+|.++|||++||++|+.+... ..+.||.|
T Consensus 433 -~~--p~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~Y 509 (931)
T KOG0476|consen 433 -YH--PEGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGY 509 (931)
T ss_pred -cC--CCCceeeHHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCccccchh
Confidence 00 0111 235578899999999999999999999999999999999999999876542 35889999
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCCCCCCcc--cccc
Q 013262 176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPW--MRTL 253 (447)
Q Consensus 176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~~~~~~~--l~~l 253 (447)
|+||||||-|++++ ++|.+||+||+||++..++|+|+|+++|+.|+.++..||||..++.|++|||+..+... ...+
T Consensus 510 AVVGAAAfsGaVTH-TvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v 588 (931)
T KOG0476|consen 510 AVVGAAAFSGAVTH-TVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTV 588 (931)
T ss_pred hhhhhhhhccceee-eeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEE
Confidence 99999999888877 99999999999999999999999999999999999999999999999999998765443 4678
Q ss_pred cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262 254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 324 (447)
Q Consensus 254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~ 324 (447)
.|+|+|.+ ++.++..+.|.+|+.+.++.+..+.||+||+. ++..|+|.|.|++|..++++
T Consensus 589 ~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~---------esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 589 KVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESK---------ESMILLGSVARRYLTALLQR 648 (931)
T ss_pred Eeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCc---------ccceeeehhHHHHHHHHHHh
Confidence 89999999 99999999999999999998889999999986 66899999999999998876
No 5
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.96 E-value=4.7e-29 Score=257.95 Aligned_cols=186 Identities=32% Similarity=0.536 Sum_probs=143.4
Q ss_pred CcchHHHHHHHHHHHHHhHcchhhhhc-CCCCCCCCCCCCCCCCCCCCcccccCCCCCcchhHHhhcCChHHHHHHHhcC
Q 013262 33 KMHKLLLALSVSVFTSVCQYCLPFLAD-CKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSS 111 (447)
Q Consensus 33 ~~~~~~e~~~v~~~t~~~~~~~~~~~~-c~~~~~~~~~~c~~~~~~~~~~~~~c~~~~y~~l~~l~~~~~~~~i~~l~~~ 111 (447)
+.+++++++++++++++++|+.|+... ..+.-....+.|.. .+.+..++.. .. .+
T Consensus 241 ~~~~~~~~~l~~l~~~~l~~~~p~~~~~g~~~i~~l~~~~~~--------------~~~~~~~~~~--------~~-~~- 296 (445)
T cd03684 241 KRYPVLEVLLVALITALISFPNPYTRLDMTELLELLFNECEP--------------GDDNSLCCYR--------DP-PA- 296 (445)
T ss_pred chhHHHHHHHHHHHHHHHHhChHHHccchhhHHHHHHhcCCC--------------cccccccccc--------cc-cC-
Confidence 356889999999999999999998742 11111111112211 1111100000 00 00
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc-----------------CCcchHH
Q 013262 112 NTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-----------------TNIDQGL 174 (447)
Q Consensus 112 ~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~-----------------~~~~~~~ 174 (447)
+......+..|++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.. ...+|+.
T Consensus 297 ~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 376 (445)
T cd03684 297 GDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGL 376 (445)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHHhhCCcccccccccCCCCccCchH
Confidence 00001234567788899999999999999999999999999999999999998743 1367899
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhhCCCCC
Q 013262 175 YAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKGLPFL 242 (447)
Q Consensus 175 ~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~kg~p~l 242 (447)
||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.+ ++++||.++++||+||+
T Consensus 377 ~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 377 YAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred HHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999999999999999 68999999999999986
No 6
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.95 E-value=5e-28 Score=251.54 Aligned_cols=125 Identities=66% Similarity=1.113 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHHHhhhchhHHHHHH
Q 013262 121 SILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVI 197 (447)
Q Consensus 121 ~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~---~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi 197 (447)
.|++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.. ...+|+.||++||||+++|++|+|+|+++|
T Consensus 335 ~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~aliGmaa~lag~~raPlt~ivi 414 (466)
T cd03685 335 TLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLYALLGAAAFLGGVMRMTVSLTVI 414 (466)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccccCCCchHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 56677788999999999999999999999999999999999998763 357899999999999999999999999999
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCCCC
Q 013262 198 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAH 245 (447)
Q Consensus 198 ~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~~~ 245 (447)
++|+||++++++|+|+++++|+++++.+++++||.++++||+||+++.
T Consensus 415 v~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 415 LLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred hhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence 999999999999999999999999999989999999999999999753
No 7
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.93 E-value=8.3e-26 Score=232.74 Aligned_cols=123 Identities=33% Similarity=0.642 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC----------CcchHHHHHHHHHHHHHhhhc
Q 013262 120 SSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT----------NIDQGLYAVLGAASLMAGSMR 189 (447)
Q Consensus 120 ~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~----------~~~~~~~a~~G~aa~~~g~~~ 189 (447)
..+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++... ..+|+.||++||||+++|++|
T Consensus 293 ~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~r 372 (426)
T cd03683 293 LTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTH 372 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHh
Confidence 3677788999999999999999999999999999999999999987643 267899999999999999999
Q ss_pred hhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCC
Q 013262 190 MTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLD 243 (447)
Q Consensus 190 ~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~ 243 (447)
+|.++ +|++|+||++++++|+|+++++|+++++.+++++||.+++.||+||++
T Consensus 373 a~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~~~iY~~~l~~~~~p~l~ 425 (426)
T cd03683 373 TVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFLQPSIYDSIIKIKKLPYLP 425 (426)
T ss_pred HHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHhCCCCCCC
Confidence 87765 699999999999999999999999999999889999999999999986
No 8
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.93 E-value=5.9e-25 Score=225.62 Aligned_cols=137 Identities=23% Similarity=0.338 Sum_probs=122.3
Q ss_pred hcCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC---CcchH
Q 013262 97 LLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQG 173 (447)
Q Consensus 97 ~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~---~~~~~ 173 (447)
.++++++.++.+++. ++.+..++.+++.|+++|++|+|+|.|||+|+|++++||++|.++|.+++... ...+.
T Consensus 277 ~~G~G~~~i~~~~~~----~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~ 352 (418)
T PRK01610 277 VWGNGYSVVQSFLTA----PPLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPDGEEITL 352 (418)
T ss_pred HhCCcHHHHHHHHcC----ChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCcccchH
Confidence 346788888888853 35566777778999999999999999999999999999999999999998532 23368
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhh
Q 013262 174 LYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELK 237 (447)
Q Consensus 174 ~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~k 237 (447)
.||++||+|+++|++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++|+.++..+
T Consensus 353 ~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 353 LLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999 999999998764
No 9
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.92 E-value=6.5e-25 Score=225.13 Aligned_cols=133 Identities=27% Similarity=0.510 Sum_probs=121.9
Q ss_pred CChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC---CcchHHH
Q 013262 99 TTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQGLY 175 (447)
Q Consensus 99 ~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~---~~~~~~~ 175 (447)
+++++.++.+++. ++++..++.+++.|+++|++|+|+|.|||+|+|++++||++|+++|++++... ..+|+.|
T Consensus 266 g~G~~~i~~~~~~----~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~ 341 (402)
T cd01031 266 GGGHGLILSLAGG----NFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPIPISAPATF 341 (402)
T ss_pred CCHHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 4567778888753 46788888999999999999999999999999999999999999999988632 4789999
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHH
Q 013262 176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILE 235 (447)
Q Consensus 176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~ 235 (447)
|++||+|+++|++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++||.+++
T Consensus 342 a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~ 402 (402)
T cd01031 342 AIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE 402 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence 99999999999999999999999999999999999999999999999999 9999998874
No 10
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.92 E-value=4e-25 Score=227.11 Aligned_cols=111 Identities=42% Similarity=0.841 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC-----------CcchHHHHHHHHHHHHHhhhc
Q 013262 121 SILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT-----------NIDQGLYAVLGAASLMAGSMR 189 (447)
Q Consensus 121 ~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~-----------~~~~~~~a~~G~aa~~~g~~~ 189 (447)
.|+++++.|+++|++|+|+|+|||+|+|+|++||++|+++|.+++... .++|+.||++||||+++|++|
T Consensus 295 ~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r 374 (416)
T cd01036 295 TLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTR 374 (416)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhc
Confidence 567788899999999999999999999999999999999999987642 378999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHH
Q 013262 190 MTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYE 231 (447)
Q Consensus 190 ~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd 231 (447)
+|+|++++++|+||++++++|+|+++++|+++++.+++|+||
T Consensus 375 ~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~~siY~ 416 (416)
T cd01036 375 LTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFCESLYH 416 (416)
T ss_pred chHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999999999999999999999999999889996
No 11
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.91 E-value=1.9e-24 Score=218.11 Aligned_cols=162 Identities=27% Similarity=0.499 Sum_probs=129.7
Q ss_pred EeeehhcccCCcchHHHHHHHHHHHHHhHcchhhhhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCcchhHHhhcCChH
Q 013262 23 IFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTND 102 (447)
Q Consensus 23 ~~~~~~~~~~~~~~~~e~~~v~~~t~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~c~~~~y~~l~~l~~~~~~ 102 (447)
.+++++. +.+.++++++++..++++++.++.|... ++++++
T Consensus 190 ~~~~~~~-~~~~~~~l~~~i~gl~~g~l~~~~p~~~--------------------------------------~~g~G~ 230 (355)
T PF00654_consen 190 KFFRKLK-RLKIPPILRPVIGGLVIGLLAFFFPEGS--------------------------------------VLGSGY 230 (355)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHHHHHHSSGG-S--------------------------------------GSSSST
T ss_pred HHHHHhc-ccccchHHHHHHHHHHHHHHHHHHhhhc--------------------------------------ccCCcH
Confidence 3444444 3444566799999999999999976521 123455
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC----CcchHHHHHH
Q 013262 103 DAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT----NIDQGLYAVL 178 (447)
Q Consensus 103 ~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~----~~~~~~~a~~ 178 (447)
+.++.+|+++ ...+.+..+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++... ..+|+.|+++
T Consensus 231 ~~i~~ll~~~-~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~ 309 (355)
T PF00654_consen 231 ELIQSLLSGS-PPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALV 309 (355)
T ss_dssp THHHHHCTT-----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHH
T ss_pred HHHHHHHcCC-cchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHH
Confidence 6688888643 2358899999999999999999999999999999999999999999999998752 2369999999
Q ss_pred HHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhh
Q 013262 179 GAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDS 224 (447)
Q Consensus 179 G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~ 224 (447)
||+|+++|++|+|++++++++|+||++++++|+|+++++|+.++++
T Consensus 310 G~~a~~~a~~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a~~v~~~ 355 (355)
T PF00654_consen 310 GMAAFLAAVTRAPLTAIVLVLELTGDFQLLLPLLIAVAVAYLVARW 355 (355)
T ss_dssp HTTHHHHHHCS-HHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999874
No 12
>PRK05277 chloride channel protein; Provisional
Probab=99.91 E-value=4.2e-24 Score=221.32 Aligned_cols=135 Identities=26% Similarity=0.474 Sum_probs=123.0
Q ss_pred CChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC---CcchHHH
Q 013262 99 TTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQGLY 175 (447)
Q Consensus 99 ~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~---~~~~~~~ 175 (447)
+++++.++++++. ++++..++.++++|++++++|+|+|.|||+|+|++++||++|+++|.+++... ..+|+.|
T Consensus 279 g~G~~~i~~~~~~----~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~ 354 (438)
T PRK05277 279 GGGFNLIPIALAG----NFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQYHIEPGTF 354 (438)
T ss_pred CChHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence 3567778888764 46777888889999999999999999999999999999999999999987632 4689999
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhh
Q 013262 176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELK 237 (447)
Q Consensus 176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~k 237 (447)
+++||+|+++|++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++||.++++.
T Consensus 355 a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 355 AIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT 417 (438)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 899999999875
No 13
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.6e-23 Score=213.64 Aligned_cols=141 Identities=28% Similarity=0.510 Sum_probs=124.6
Q ss_pred CChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC---CcchHHH
Q 013262 99 TTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQGLY 175 (447)
Q Consensus 99 ~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~---~~~~~~~ 175 (447)
++|+..++..++.+ +.+..++.+++.|+++|++|+|+|.|||+|.|++++||++|.++|.+++... ...++.|
T Consensus 293 g~G~~~~~~~~~~~----~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~~~~~~~~~ 368 (443)
T COG0038 293 GNGYGLIQLALAGE----GGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPPSILEPGLF 368 (443)
T ss_pred CCCccHHHHHHccC----ccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCccccchHHH
Confidence 45666777777643 3344378889999999999999999999999999999999999999988742 3457799
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhhCCCCCC
Q 013262 176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKGLPFLD 243 (447)
Q Consensus 176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~kg~p~l~ 243 (447)
+++||+|+++|++|+|++++++++||||+++.++|+|+++++|+.+++.. ++++|+..+++++.+..+
T Consensus 369 al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
T COG0038 369 ALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAPILR 437 (443)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcCchhhh
Confidence 99999999999999999999999999999999999999999999999998 999999999999887443
No 14
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.88 E-value=1.7e-22 Score=206.23 Aligned_cols=124 Identities=27% Similarity=0.447 Sum_probs=110.8
Q ss_pred CChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHH
Q 013262 99 TTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVL 178 (447)
Q Consensus 99 ~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~ 178 (447)
++|++.++.+++.+. .. .+.++++|+++|++|+|+|.|||+|+|++++||++|++++.+++. .+|..|+++
T Consensus 266 G~G~~~i~~~~~~~~--~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~~---~~~~~~a~~ 336 (390)
T cd01034 266 GTGYLQARAALEGGG--GL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGS---VSQGALVLL 336 (390)
T ss_pred cCcHHHHHHHHhCCC--cc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhcC---CCchHHHHH
Confidence 456777888876431 22 234577999999999999999999999999999999999998863 589999999
Q ss_pred HHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHH
Q 013262 179 GAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYE 231 (447)
Q Consensus 179 G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd 231 (447)
||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++||
T Consensus 337 G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 337 GMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999998 899986
No 15
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.88 E-value=1.1e-21 Score=200.07 Aligned_cols=125 Identities=24% Similarity=0.414 Sum_probs=113.7
Q ss_pred hcCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc-CCcchHHH
Q 013262 97 LLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-TNIDQGLY 175 (447)
Q Consensus 97 ~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~-~~~~~~~~ 175 (447)
.++++++.++.+++. .++...++.++++|+++|++|+|+|.|||+|+|++++||++|+++|.+++.. +..++..|
T Consensus 260 ~~G~G~~~i~~~~~~----~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~ 335 (388)
T cd01033 260 ILGNGRALAQLAFST----TLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPPLSIAAF 335 (388)
T ss_pred HhCCcHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence 356788899999875 3567778888999999999999999999999999999999999999998763 35678899
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHhhc
Q 013262 176 AVLGAASLMAGSMRMTVSLCVIFLELTN-NLLLLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~-~~~~~~p~~ia~~va~~v~~~l 225 (447)
+++||||+++|++|+|++++++++|+|| +++.++|+|+++++|+.+++.+
T Consensus 336 a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 336 ALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 9999999999999999999866
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.84 E-value=2.9e-20 Score=189.71 Aligned_cols=142 Identities=24% Similarity=0.411 Sum_probs=118.9
Q ss_pred cchHHHHHHHHHHHHHhHcchhhhhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCcchhHHhhcCChHHHHHHHhcCCC
Q 013262 34 MHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNT 113 (447)
Q Consensus 34 ~~~~~e~~~v~~~t~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~c~~~~y~~l~~l~~~~~~~~i~~l~~~~~ 113 (447)
+++++.+++.+++++++.++.|... +++++.++..++
T Consensus 239 ~~~~~~~~i~gll~~~~~~~~p~~~----------------------------------------g~G~~~~~~~~~--- 275 (383)
T cd00400 239 IPPWLRPALGGLLLGLLGLFLPQVL----------------------------------------GSGYGAILLALA--- 275 (383)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------cCcHHHHHHHHc---
Confidence 4455666777777777777666543 233444566654
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHHHhhhch
Q 013262 114 PTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRM 190 (447)
Q Consensus 114 ~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~---~~~~~~~~a~~G~aa~~~g~~~~ 190 (447)
+++++..++.+++.|++++++|+|+|.|||+|.|++++||++|+++|.+++.. ...+|..|+++||+|++++++|+
T Consensus 276 -~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~~~~~~~~~~~~G~aa~la~~~~a 354 (383)
T cd00400 276 -GELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPGLVASPGAYALVGMAALLAAVLRA 354 (383)
T ss_pred -CChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHHhCc
Confidence 34667788889999999999999999999999999999999999999999863 34689999999999999999999
Q ss_pred hHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 013262 191 TVSLCVIFLELTNNLLLLPITMIVLLIAK 219 (447)
Q Consensus 191 p~s~~vi~~E~t~~~~~~~p~~ia~~va~ 219 (447)
|++++++++|+||++++++|+|+++++||
T Consensus 355 Plt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 355 PLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred hHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 99999999999999999999999998875
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.83 E-value=2.7e-20 Score=189.34 Aligned_cols=119 Identities=23% Similarity=0.382 Sum_probs=103.1
Q ss_pred cCChHHHHHH-HhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHH
Q 013262 98 LTTNDDAVRN-IFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYA 176 (447)
Q Consensus 98 ~~~~~~~i~~-l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a 176 (447)
.+.+++.++. +++. +++ ...++.|+++|++|+|+|.|||+|+|++++||++|+++|++++ .+++.|+
T Consensus 259 ~G~g~~~i~~~~~~~----~~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~----~~~~~~~ 326 (378)
T cd03682 259 LGLGTPLIEDSFFGG----TVY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG----LPVSLLA 326 (378)
T ss_pred ccCCHHHHHHHHhcC----Cch----HHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC----CCHHHHH
Confidence 3456677776 5543 222 2345799999999999999999999999999999999999986 5788999
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHH
Q 013262 177 VLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYE 231 (447)
Q Consensus 177 ~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd 231 (447)
++||+|++++++|+|++++++++|+|| ++.++|+|+++++|+.+++ +++||+
T Consensus 327 ~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~ 378 (378)
T cd03682 327 ALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--HTGIYG 378 (378)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence 999999999999999999999999999 6778899999999999987 788884
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=99.71 E-value=6e-17 Score=165.86 Aligned_cols=115 Identities=12% Similarity=0.185 Sum_probs=102.5
Q ss_pred cCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHH
Q 013262 98 LTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAV 177 (447)
Q Consensus 98 ~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~ 177 (447)
+++|++.++.+.+. +++++..+++++++|+++|++|+|+|.|||+|+|+|++||++|..++.+++ ..++...++
T Consensus 280 ~g~Gy~~i~~~~~~---~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l~p---~~~~~~~v~ 353 (414)
T PRK03655 280 LFKGLDEMQQMAAN---QAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAHVP---AVPAAITVS 353 (414)
T ss_pred ccCCHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHhcc---CCChHHHHH
Confidence 66788899888754 357888888899999999999999999999999999999999999999875 367888999
Q ss_pred HHHHHHHHhhhc----hhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 013262 178 LGAASLMAGSMR----MTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGD 223 (447)
Q Consensus 178 ~G~aa~~~g~~~----~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~ 223 (447)
+||+|+++|++| +|++++++++||| ++|+|++++++.|+.-
T Consensus 354 ~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~~ 398 (414)
T PRK03655 354 CAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLLL 398 (414)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHHH
Confidence 999999999999 6999999999999 8899999888877653
No 19
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.68 E-value=3.1e-16 Score=144.87 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=109.7
Q ss_pred cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329 (447)
Q Consensus 250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~ 329 (447)
..+.+|+++|++ ++++++++++++++..++.++++++.||+|+ ++++|+++.+|+..++.+..
T Consensus 169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~------------dk~vGiit~~dI~~aia~g~--- 231 (294)
T COG2524 169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD------------DKIVGIITLSDIAKAIANGN--- 231 (294)
T ss_pred cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC------------CceEEEEEHHHHHHHHHcCC---
Confidence 346789999999 9999999999999999999999999999998 58999999999988775531
Q ss_pred hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262 330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 409 (447)
Q Consensus 330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~ 409 (447)
....++++|.++++++++|+.+.+|+++|.++++.+|.|+|.
T Consensus 232 -------------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds- 273 (294)
T COG2524 232 -------------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS- 273 (294)
T ss_pred -------------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-
Confidence 123477889999999999999999999999999999999997
Q ss_pred ccCCCCcEEEEEeHHHHHHHHH
Q 013262 410 EAAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 410 ~~~g~~~lvGIITr~DLl~~~~ 431 (447)
+|+.+|+|||.|+++...
T Consensus 274 ----~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 274 ----NGKPVGIITRTDILTRIA 291 (294)
T ss_pred ----CCcEEEEEehHHHHHHhh
Confidence 678999999999998653
No 20
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.66 E-value=7.1e-16 Score=153.78 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=124.3
Q ss_pred CCchHHHHHHhhCCCC---CCCCCCcccc---cccccccccCCCC--eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCC
Q 013262 226 NPSIYEIILELKGLPF---LDAHPEPWMR---TLTVGELIDAKPP--VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVV 297 (447)
Q Consensus 226 ~~sIYd~~l~~kg~p~---l~~~~~~~l~---~l~v~diM~~~~~--vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~ 297 (447)
.+++|...+.++|... ...++...+. ..+|+|+|.+ + ++++++++++.++.+.|.+++...+||+|++
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-- 239 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-- 239 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC--
Confidence 5689999999988866 6666777788 8999999999 6 8999999999999999988888999999987
Q ss_pred CCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccC
Q 013262 298 PPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT 377 (447)
Q Consensus 298 ~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~ 377 (447)
++++|+|+..|+.+.+.... . ....+.++|.+
T Consensus 240 ---------g~~iG~vt~~dl~~~~~~~~---~------------------------------------~~~~v~~im~~ 271 (321)
T PRK11543 240 ---------QQVQGVFTDGDLRRWLVGGG---A------------------------------------LTTPVNEAMTR 271 (321)
T ss_pred ---------CcEEEEecHHHHHHHHhCCC---C------------------------------------cCCcHHHhcCC
Confidence 89999999999976543210 0 01124567888
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 429 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~ 429 (447)
++.++.+++++.+|++.|.+.+.+++||||+ +++++|+||++|++++
T Consensus 272 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 272 GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-----NGKLTGAINLQDFYQA 318 (321)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHhc
Confidence 8999999999999999999999999999987 4689999999999874
No 21
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.66 E-value=4e-15 Score=139.86 Aligned_cols=135 Identities=21% Similarity=0.272 Sum_probs=112.0
Q ss_pred ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262 251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 330 (447)
Q Consensus 251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~ 330 (447)
..+++.|||++ +++++++++++.++.++|.+++...+||+|++ .+++|+|+++|+..-.....+.
T Consensus 243 ~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-----------~rl~GiVt~~dl~~~a~~~p~q-- 307 (382)
T COG3448 243 GELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-----------RRLVGIVTQRDLLKHARPSPFQ-- 307 (382)
T ss_pred ccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccc-----------cceeeeeeHHHHhhccCcchHH--
Confidence 46788999999 99999999999999999999999999999998 8999999999996521110000
Q ss_pred cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262 331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 410 (447)
Q Consensus 331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~ 410 (447)
.+. ++ ....++.+|++...++.+|++..+..-+|.+.|.+++||+|+
T Consensus 308 -------rlr-------~~-----------------~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-- 354 (382)
T COG3448 308 -------RLR-------FL-----------------RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA-- 354 (382)
T ss_pred -------Hhh-------cc-----------------CCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC--
Confidence 000 11 112477899999999999999999999999999999999998
Q ss_pred cCCCCcEEEEEeHHHHHHHHHhhhcC
Q 013262 411 AAGVSPVVGILTRQDLRAFNILTAFP 436 (447)
Q Consensus 411 ~~g~~~lvGIITr~DLl~~~~~~~~~ 436 (447)
.|+++||||..|++.+..++...
T Consensus 355 ---~g~lvGIvsQtDliaal~r~~~~ 377 (382)
T COG3448 355 ---AGKLVGIVSQTDLIAALYRNWSQ 377 (382)
T ss_pred ---CCcEEEEeeHHHHHHHHHHHHHH
Confidence 67899999999999988876443
No 22
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.65 E-value=1.7e-15 Score=151.36 Aligned_cols=154 Identities=12% Similarity=0.170 Sum_probs=124.0
Q ss_pred HHhhc-CCchHHHHHHhhCCCC---CCCCCCccc---ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEec
Q 013262 221 VGDSF-NPSIYEIILELKGLPF---LDAHPEPWM---RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLD 293 (447)
Q Consensus 221 v~~~l-~~sIYd~~l~~kg~p~---l~~~~~~~l---~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd 293 (447)
++..+ .+++|...+.++|.-. ...++...+ ..++|+|+|.+..+++++++++++.++.+.|.+++++.+||+|
T Consensus 163 ia~~~~~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd 242 (326)
T PRK10892 163 TATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD 242 (326)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc
Confidence 44444 6789999999999876 555566566 7899999998522678999999999999999888887778888
Q ss_pred CCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccc
Q 013262 294 EGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHP 373 (447)
Q Consensus 294 ~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~ 373 (447)
++ |+++|+|+.+|+.+++.... . ....++++
T Consensus 243 ~~-----------g~lvGivt~~Dl~~~~~~~~----~----------------------------------~~~~~v~~ 273 (326)
T PRK10892 243 DN-----------MKIEGIFTDGDLRRVFDMGI----D----------------------------------LRQASIAD 273 (326)
T ss_pred CC-----------CcEEEEEecHHHHHHHhcCC----C----------------------------------cccCCHHH
Confidence 76 89999999999976443210 0 00124567
Q ss_pred cccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262 374 LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 429 (447)
Q Consensus 374 im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~ 429 (447)
+|.+++.++.+++++.+|+++|.+.+.+++||+|+ ++++|+||++|++++
T Consensus 274 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~------~~lvGiit~~dil~~ 323 (326)
T PRK10892 274 VMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG------DHLLGVLHMHDLLRA 323 (326)
T ss_pred hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC------CEEEEEEEhHHhHhc
Confidence 88889999999999999999999999999999974 579999999999975
No 23
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.63 E-value=4.4e-16 Score=149.48 Aligned_cols=151 Identities=20% Similarity=0.259 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCCCCCCcccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCC
Q 013262 208 LPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHN 287 (447)
Q Consensus 208 ~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~~~~~~~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~ 287 (447)
-+|++-...-.+.|+..+++.+|+..++.. -++|+|+|.|..+..++.+++++++..++.++++|+
T Consensus 157 ~lPvlstsYDTFTVAtmIN~Al~n~lIKkd--------------I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~s 222 (432)
T COG4109 157 GLPVLSTSYDTFTVATMINKALSNQLIKKD--------------IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHS 222 (432)
T ss_pred CCceEEecccceeHHHHHHHHHHHhhhhhh--------------eeeHHHhccccccceeccccccHHHHHHHHHHcCCC
Confidence 478888888888899888999999888742 368999999766888999999999999999999999
Q ss_pred eEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhh
Q 013262 288 GFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEM 367 (447)
Q Consensus 288 ~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~ 367 (447)
.|||+|+. .+++|+++.+|+.... .
T Consensus 223 RfPVvn~~-----------~kvvGvVt~rDv~~~~--------------------------------------------~ 247 (432)
T COG4109 223 RFPVVNRS-----------MKVVGVVTMRDVLDKK--------------------------------------------P 247 (432)
T ss_pred ccceeccc-----------ceEEEEEEehhhhcCC--------------------------------------------C
Confidence 99999997 8999999999985310 1
Q ss_pred ccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262 368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 432 (447)
Q Consensus 368 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~ 432 (447)
...+..+|+++|++|.+.+++..+.+.|.-.|++.+||+|+ +++++|+|||+|+++.+..
T Consensus 248 ~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-----n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 248 STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-----NNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcC-----CceEEEEEEHHHHHHHHHH
Confidence 13456689999999999999999999999999999999998 6789999999999998764
No 24
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=1.9e-13 Score=115.71 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=92.5
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.|.+++.+.+||++++ ++++|+++.+|+..++..++.... ..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-----------~~~~Giv~~~dl~~~~~~~~~~~~-----------~~ 59 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-----------GKVVDVYSRFDVINLAKEGAYNNL-----------DL 59 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-----------CeEEEEEeHHHHHHHHhcCccccc-----------cC
Confidence 67889999999999999999999999999876 899999999999876543221000 00
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
+..+. +..++.|..++.++++++++.+++++|.+.+.+++||+|+ +++++|+||+
T Consensus 60 ~~~~~--------------------~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-----~~~~~Givt~ 114 (120)
T cd04641 60 TVGEA--------------------LERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-----NKRVEGIISL 114 (120)
T ss_pred CHHHH--------------------HhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-----CCCEEEEEEH
Confidence 00000 1123345567789999999999999999999999999987 4679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 115 ~di~~ 119 (120)
T cd04641 115 SDILQ 119 (120)
T ss_pred HHhhc
Confidence 99976
No 25
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=2.6e-13 Score=113.34 Aligned_cols=109 Identities=14% Similarity=0.195 Sum_probs=90.2
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+..|+.+.....+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~----------------- 53 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-----------NKVLGQVTLSDLLEIGPNDY----------------- 53 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHhhccccc-----------------
Confidence 45788999999999999998888999999986 89999999999965211000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....+.++|...+.++.+++++.+|+++|.+.+.+++||+|+ +|+++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-----~~~~~Giit~ 105 (111)
T cd04603 54 -----------------------ETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-----EGKLVGTIYE 105 (111)
T ss_pred -----------------------cccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-----CCeEEEEEEh
Confidence 001244567778889999999999999999999999999986 5689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04603 106 RELLR 110 (111)
T ss_pred HHhhc
Confidence 99975
No 26
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=3.2e-13 Score=113.30 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=92.0
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
.+.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+.+|+.+.+..... .
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----------g~~~G~vt~~dl~~~~~~~~~-~-------------- 55 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-----------GKLAGVLTKTDVVRQMGRCGG-P-------------- 55 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEehHHHHHHHhhcCC-C--------------
Confidence 35678999999999999999999999999987 899999999999765432000 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
.....+.++|.+++.++.+++++.++++.|.+.+.+++||+|+ +++++|+||+
T Consensus 56 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~Gvi~~ 108 (114)
T cd04619 56 ----------------------GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-----NARPLGVLNA 108 (114)
T ss_pred ----------------------cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-----CCcEEEEEEh
Confidence 0012345567788899999999999999999999999999987 4689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 109 ~dl~~ 113 (114)
T cd04619 109 RDALK 113 (114)
T ss_pred Hhhcc
Confidence 99874
No 27
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.49 E-value=2.9e-13 Score=116.57 Aligned_cols=122 Identities=24% Similarity=0.366 Sum_probs=101.6
Q ss_pred ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262 251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 330 (447)
Q Consensus 251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~ 330 (447)
..++++++|.. +++.+++++++.+++++|++.+++.+||+++ ++++|-|+.+++.+++.+.. +
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------------~k~VGsItE~~iv~~~le~~---e 125 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE------------DKVVGSITENDIVRALLEGM---E 125 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC------------CeeeeeecHHHHHHHHhccc---c
Confidence 46899999999 9999999999999999999999999999987 69999999999988764421 0
Q ss_pred cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262 331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 410 (447)
Q Consensus 331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~ 410 (447)
.. ....++++|....++|++++++..+.+++..+.. +.|++
T Consensus 126 -------~i---------------------------~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--- 166 (187)
T COG3620 126 -------SI---------------------------RSLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE--- 166 (187)
T ss_pred -------ch---------------------------hhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe---
Confidence 00 1234677888888999999999999999887654 66775
Q ss_pred cCCCCcEEEEEeHHHHHHHHH
Q 013262 411 AAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 411 ~~g~~~lvGIITr~DLl~~~~ 431 (447)
+|+++||||+.|+++...
T Consensus 167 ---~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 167 ---NGKVVGIITKADIMKLLA 184 (187)
T ss_pred ---CCceEEEEeHHHHHHHHh
Confidence 467999999999998654
No 28
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.49 E-value=1.7e-13 Score=142.41 Aligned_cols=124 Identities=20% Similarity=0.222 Sum_probs=106.9
Q ss_pred cccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhh
Q 013262 248 PWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF 327 (447)
Q Consensus 248 ~~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~ 327 (447)
..++.++++++|.+ +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+...
T Consensus 84 ~~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-----------gklvGIVT~rDL~~~------ 144 (479)
T PRK07807 84 EVVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-----------GRPVGVVTEADCAGV------ 144 (479)
T ss_pred HHHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCC-----------CeEEEEEeHHHHhcC------
Confidence 34678899999999 89999999999999999999999999999987 899999999998321
Q ss_pred hhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEe
Q 013262 328 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP 407 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd 407 (447)
. ...+++++|+++++++++++++.+|+++|.+.+.+++||+|
T Consensus 145 -~-------------------------------------~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD 186 (479)
T PRK07807 145 -D-------------------------------------RFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVD 186 (479)
T ss_pred -c-------------------------------------cCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEc
Confidence 0 00135567888999999999999999999999999999998
Q ss_pred CcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262 408 KYEAAGVSPVVGILTRQDLRAFNILT 433 (447)
Q Consensus 408 ~~~~~g~~~lvGIITr~DLl~~~~~~ 433 (447)
+ +++++|+||++||++.....
T Consensus 187 ~-----~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 187 A-----DGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred C-----CCeEEEEEEHHHHHHHhhCC
Confidence 7 56899999999999876543
No 29
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=4.1e-13 Score=110.11 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=83.3
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
.++++++++++.++.+.|.+++++++||+|++ +++++|+|+.+|+.+.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----------~~~~~Givt~~Dl~~~~--------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR----------KQQFVGMLTITDFILIL--------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC----------CCEEEEEEEHHHHhhhe---------------------
Confidence 57789999999999999999999999999863 17899999999985411
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
. +.++.+++++.+|+++|.+.+.+++||+|+ + +|+++|+||+
T Consensus 51 ---------------------------------~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~-~~~~~giit~ 92 (98)
T cd04618 51 ---------------------------------R-LVSIHPERSLFDAALLLLKNKIHRLPVIDP---S-TGTGLYILTS 92 (98)
T ss_pred ---------------------------------e-eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC---C-CCCceEEeeh
Confidence 0 568999999999999999999999999987 2 2689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 93 ~d~~~ 97 (98)
T cd04618 93 RRILK 97 (98)
T ss_pred hhhhc
Confidence 99975
No 30
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.48 E-value=3.7e-13 Score=132.01 Aligned_cols=133 Identities=18% Similarity=0.326 Sum_probs=107.8
Q ss_pred cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329 (447)
Q Consensus 250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~ 329 (447)
+...+|+++|+++.++++++.+.+++++.+.+.+++++.|||++++ .++++|+|+.+|++..+....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~----------~d~iiGiv~~kDll~~~~~~~--- 130 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----------KDHIEGILMAKDLLPFMRSDA--- 130 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC----------CCcEEEEEEHHHHHhHhhccC---
Confidence 5677999999985569999999999999999999999999999864 168999999999975432100
Q ss_pred hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262 330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 409 (447)
Q Consensus 330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~ 409 (447)
. ..++.++|. .+++|++++++.++++.|++.+.+.+||+|+
T Consensus 131 -~------------------------------------~~~l~~l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe- 171 (292)
T PRK15094 131 -E------------------------------------AFSMDKVLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE- 171 (292)
T ss_pred -C------------------------------------cCCHHHHcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-
Confidence 0 012334553 5668999999999999999999999999997
Q ss_pred ccCCCCcEEEEEeHHHHHHHHHhhhcCcc
Q 013262 410 EAAGVSPVVGILTRQDLRAFNILTAFPHL 438 (447)
Q Consensus 410 ~~~g~~~lvGIITr~DLl~~~~~~~~~~~ 438 (447)
.|.++|+||++|+++....+...+.
T Consensus 172 ----~G~viGiVTleDIle~ivGei~de~ 196 (292)
T PRK15094 172 ----FGGVSGLVTIEDILELIVGEIEDEY 196 (292)
T ss_pred ----CCCEEEEeEHHHHHHHHhCCCcccc
Confidence 4569999999999999887655443
No 31
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.47 E-value=5.1e-13 Score=137.11 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=108.7
Q ss_pred cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329 (447)
Q Consensus 250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~ 329 (447)
+++.+|+|+|+++.++++++.+++++++.+.+.+++|+.+||++++ .++++|+|+.+|++..+...
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~----------~d~ivGiv~~kDll~~~~~~---- 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET----------IDNITGVLYIKDLLPHLNKK---- 253 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC----------CCceEEEEEHHHHHhHhccC----
Confidence 5688999999987789999999999999999999999999999864 16899999999997532110
Q ss_pred hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262 330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 409 (447)
Q Consensus 330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~ 409 (447)
..+++++| ++|.+|++++++.++++.|++.+.+..+|+|+
T Consensus 254 --------------------------------------~~~l~~~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE- 293 (408)
T TIGR03520 254 --------------------------------------NFDWQSLL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE- 293 (408)
T ss_pred --------------------------------------CCCHHHHc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-
Confidence 01234455 46889999999999999999999999999998
Q ss_pred ccCCCCcEEEEEeHHHHHHHHHhhhcCc
Q 013262 410 EAAGVSPVVGILTRQDLRAFNILTAFPH 437 (447)
Q Consensus 410 ~~~g~~~lvGIITr~DLl~~~~~~~~~~ 437 (447)
.|.++|+||.+|++++...+...+
T Consensus 294 ----~G~~~GiVT~eDileeivgei~de 317 (408)
T TIGR03520 294 ----YGGTSGLVTLEDIIEEIVGDISDE 317 (408)
T ss_pred ----CCCEEEEEEHHHHHHHHhCCCCCc
Confidence 456999999999999987665544
No 32
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1e-12 Score=111.42 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=95.1
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.+.+.+++.+||++++ ++++|+|+.++|...+....... .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~Giv~~~~l~~~~~~~~~~~---------~---- 58 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-----------RRLVGIVTQRDLLRHARPDGRRP---------L---- 58 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-----------CCEEEEEEHHHHHhhhcccccch---------h----
Confidence 67889999999999999998899999999886 89999999999976543211000 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
..... ......++.++|++.+.++++++++.+++++|.+.+.+.+||+|+ +|+++|+||+
T Consensus 59 --~~~~~-------------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvit~ 118 (124)
T cd04600 59 --RGRLR-------------GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-----DRRLVGIVTQ 118 (124)
T ss_pred --hhhhh-------------cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-----CCCEEEEEEh
Confidence 00000 001223567788889999999999999999999999999999997 5679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 119 ~di~~ 123 (124)
T cd04600 119 TDLIA 123 (124)
T ss_pred HHhhc
Confidence 99975
No 33
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.2e-12 Score=108.68 Aligned_cols=109 Identities=27% Similarity=0.312 Sum_probs=91.0
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.+++++.+.+.+.+++.+||++++ ++++|+|+..++.+.+....
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~----------------- 53 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-----------GHLVGLLTRDDLIRALAEGG----------------- 53 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-----------CcEEEEeeHHHHHHHHHhcC-----------------
Confidence 56788999999999999988888999999986 89999999999977543211
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...++.++|...+.++.+++++.++++.|.+.+.+++||+|+ +++++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~ 105 (111)
T cd04639 54 -----------------------PDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-----SGRLVGLVTL 105 (111)
T ss_pred -----------------------CCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-----CCCEEEEEEH
Confidence 001244566678889999999999999999999999999986 4689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+.+
T Consensus 106 ~dl~~ 110 (111)
T cd04639 106 ENVGE 110 (111)
T ss_pred HHhhc
Confidence 99975
No 34
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.44 E-value=1.5e-12 Score=109.09 Aligned_cols=113 Identities=24% Similarity=0.278 Sum_probs=92.3
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+||...+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~~~--------------- 55 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-----------GGVVGIITLPDLLRALEADEAG--------------- 55 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-----------CCEEEEEEHHHHHHHHhccccc---------------
Confidence 56688999999999999998889999999986 8999999999998754321100
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....++++|..++.++.+++++.+++++|.+.+.+++||+|+ ++.++++|+||+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~---~~~~~~~Gvit~ 109 (115)
T cd04593 56 -----------------------EPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR---GNPGQVLGLLTR 109 (115)
T ss_pred -----------------------ccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeC---CCCCeEEEEEEh
Confidence 001244566788899999999999999999999999999987 322689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 110 ~di~~ 114 (115)
T cd04593 110 ENVLL 114 (115)
T ss_pred HHhhc
Confidence 99986
No 35
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=1.8e-12 Score=109.39 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=89.7
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.|..++.+.+||+|++ ++++|+|+..|+.+...... +.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----------~~~~Givt~~dl~~~~~~~~---~~------------ 55 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-----------GDLVGVVSRKDLLKASIGGA---DL------------ 55 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHHHHHcCC---Cc------------
Confidence 56789999999999999988888999999986 78999999999977543211 00
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCC-CCcEEEE
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG-VSPVVGI 420 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g-~~~lvGI 420 (447)
....+.++|.+ .+.++++++++.+++++|.+.+.+++||+|+ ++ .++++|+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~---~~~~~~l~Gv 109 (118)
T cd04617 56 -----------------------QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK---VDEGLEVIGR 109 (118)
T ss_pred -----------------------cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC---CCccceEEEE
Confidence 00123335543 5779999999999999999999999999987 21 1589999
Q ss_pred EeHHHHHH
Q 013262 421 LTRQDLRA 428 (447)
Q Consensus 421 ITr~DLl~ 428 (447)
||++|+++
T Consensus 110 it~~~l~~ 117 (118)
T cd04617 110 ITKTNITK 117 (118)
T ss_pred EEhhheec
Confidence 99999864
No 36
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.5e-12 Score=107.99 Aligned_cols=105 Identities=24% Similarity=0.326 Sum_probs=89.3
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|+|+..++.... .
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~------~-------------- 51 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-----------NKVVGIVTSKDVAGKD------P-------------- 51 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-----------CeEEEEecHHHHhccc------c--------------
Confidence 67889999999999999998888999999986 8999999999985310 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
..+++++|...+.++++++++.+++++|.+.+.+.+||+|+ +|+++|+||+
T Consensus 52 ------------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~ 102 (108)
T cd04596 52 ------------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD-----NKKLLGIISR 102 (108)
T ss_pred ------------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCCEEEEEEH
Confidence 01234456677889999999999999999999999999987 5689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 103 ~di~~ 107 (108)
T cd04596 103 QDVLK 107 (108)
T ss_pred HHhhc
Confidence 99975
No 37
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=4e-12 Score=105.42 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=90.3
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++++.+.+++++.+||+|++ ++++|+++.++++..+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~----------------- 54 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDED-----------GRLVGIVTSWDISKAVARDK----------------- 54 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCC-----------CcEEEEEeHHHHHHHHhhCc-----------------
Confidence 67789999999999999998889999999886 89999999999976442210
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
.++.++|.+++.++.+++++.++++.|.+.+.+.+||+++ +++++|+||+
T Consensus 55 -------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~v~~ 104 (110)
T cd04605 55 -------------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDA-----ENRVIGIITS 104 (110)
T ss_pred -------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-----CCcEEEEEEH
Confidence 0133456678889999999999999999999999999987 4679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+.+
T Consensus 105 ~di~~ 109 (110)
T cd04605 105 EDISK 109 (110)
T ss_pred HHhhh
Confidence 99964
No 38
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.42 E-value=9.1e-13 Score=112.73 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=91.7
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.|++++++.+||+|++ ++++|+|+.+++...+...+..
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Gii~~~dl~~~~~~~~~~--------------- 56 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-----------GKILGMVTLGNLLSSLSSGKVQ--------------- 56 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHHHHHHhccC---------------
Confidence 67889999999999999999999999999986 8899999999998654432100
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHH---------cCCCEEEEEeCcccCCC
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQ---------VGLRHLLVVPKYEAAGV 414 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~---------~gl~~LpVVd~~~~~g~ 414 (447)
....++++|++++.++.+++++.++.+++.. .+.+++||+++ +
T Consensus 57 -----------------------~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~ 108 (124)
T cd04608 57 -----------------------PSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-----Q 108 (124)
T ss_pred -----------------------CCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-----c
Confidence 1134667888999999999999999996533 36788899986 5
Q ss_pred CcEEEEEeHHHHHHH
Q 013262 415 SPVVGILTRQDLRAF 429 (447)
Q Consensus 415 ~~lvGIITr~DLl~~ 429 (447)
|+++||||+.|++++
T Consensus 109 ~~~~Givt~~Dl~~~ 123 (124)
T cd04608 109 EKPIGIVTKIDLLSY 123 (124)
T ss_pred cceEEEEehhHhhhh
Confidence 689999999999975
No 39
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.41 E-value=1e-12 Score=137.25 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=111.0
Q ss_pred CCchHHHHHHhhCCCCCCCC-C-Ccccc-cccccccccCC-CCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCC
Q 013262 226 NPSIYEIILELKGLPFLDAH-P-EPWMR-TLTVGELIDAK-PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSG 301 (447)
Q Consensus 226 ~~sIYd~~l~~kg~p~l~~~-~-~~~l~-~l~v~diM~~~-~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~ 301 (447)
...+--.+++.+|+.+.+.. + +...+ -.+|+++|... .+..++++++++.++++.|.+++++.+||+|++
T Consensus 64 gdalAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~------ 137 (502)
T PRK07107 64 DDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDG------ 137 (502)
T ss_pred hHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCC------
Confidence 45566667778888765321 1 11111 13577888631 134689999999999999999999999999962
Q ss_pred CCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccC--CC
Q 013262 302 LANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TP 379 (447)
Q Consensus 302 ~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~--~p 379 (447)
.++++++|+|+..|+.... .. ...+++++|++ ++
T Consensus 138 --~~~gkLvGIVT~~DLr~~~--~~----------------------------------------~~~~V~dIMt~~~~~ 173 (502)
T PRK07107 138 --TAHGKLLGIVTSRDYRISR--MS----------------------------------------LDTKVKDFMTPFEKL 173 (502)
T ss_pred --CcCCEEEEEEEcHHhhccc--cC----------------------------------------CCCCHHHHhCCCCCe
Confidence 1138999999999985310 00 01235566765 67
Q ss_pred ceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262 380 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 430 (447)
Q Consensus 380 ~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~ 430 (447)
+++++++++.+|+++|.+++++++||||+ +++++|+||++|+++..
T Consensus 174 itv~~d~~l~eAl~lM~e~~i~~LPVVD~-----~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 174 VTANEGTTLKEANDIIWDHKLNTLPIVDK-----NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEhHHHHhcc
Confidence 88999999999999999999999999987 56799999999999854
No 40
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.3e-12 Score=105.43 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=91.3
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.+.+.+++.+||+|++ ++++|+++.+|+...+......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~Giv~~~~l~~~~~~~~~~--------------- 55 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-----------GRLVGIFSERDIVRKVALRGAS--------------- 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEehHHHHHHHhhcCCC---------------
Confidence 56788999999999999998899999999986 7999999999998755321100
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....++.++|..++.++.+++++.++++.|.+.+.+++||+++ ++++|+||+
T Consensus 56 ----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~------~~~~Gvit~ 107 (113)
T cd04623 56 ----------------------ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG------GKLVGIVSI 107 (113)
T ss_pred ----------------------ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC------CEEEEEEEH
Confidence 0012345567778889999999999999999999999999974 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 108 ~di~~ 112 (113)
T cd04623 108 GDVVK 112 (113)
T ss_pred HHhhc
Confidence 99975
No 41
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=3.9e-12 Score=103.71 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=83.4
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
+++++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~---------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-----------GKLSGIITERDLIAK---------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEEHHHHhcC----------------------
Confidence 57789999999999999988889999999986 899999999998430
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
..+.++++++++.+++++|.+.+.+++||+|+ +++++|+||+
T Consensus 49 ---------------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-----~~~~~Giit~ 90 (96)
T cd04614 49 ---------------------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIING-----NDKLIGLLRD 90 (96)
T ss_pred ---------------------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC-----CCcEEEEEEH
Confidence 11668899999999999999999999999986 4689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 91 ~di~~ 95 (96)
T cd04614 91 HDLLK 95 (96)
T ss_pred HHhhc
Confidence 99985
No 42
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=3.4e-12 Score=106.74 Aligned_cols=109 Identities=23% Similarity=0.309 Sum_probs=86.7
Q ss_pred CeeEecCCCCHHHHHHHHhcCC-CCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 342 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~-~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~ 342 (447)
++.++++++++.++.+.|.+.+ .+.+||+|++ ++++|+|+.+|+.......+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~---------------- 54 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-----------GRYVGIISLADLRAIPTSQW---------------- 54 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-----------CcEEEEEEHHHHHHHHHhhc----------------
Confidence 5778999999999999887664 7889999886 89999999999976442110
Q ss_pred chHHHHhhhcccccccccchhhhhhccCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEE
Q 013262 343 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 420 (447)
Q Consensus 343 ~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGI 420 (447)
....+.++|+. .+.++.+++++.++++.|++.+.+++||+|+ +++++|+
T Consensus 55 ------------------------~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-----~~~~~Gv 105 (114)
T cd04801 55 ------------------------AQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-----SGQVIGL 105 (114)
T ss_pred ------------------------cccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-----CCcEEEE
Confidence 00123344543 2568999999999999999999999999986 4679999
Q ss_pred EeHHHHHH
Q 013262 421 LTRQDLRA 428 (447)
Q Consensus 421 ITr~DLl~ 428 (447)
||++|+++
T Consensus 106 l~~~di~~ 113 (114)
T cd04801 106 ITEADLLR 113 (114)
T ss_pred Eeccceec
Confidence 99999864
No 43
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.6e-12 Score=106.03 Aligned_cols=112 Identities=13% Similarity=0.252 Sum_probs=90.7
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++++.|.+.+++.+||+|++ .++++|+++.+|+++.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----------~~~~~G~v~~~dl~~~~~~~~~~~-------------- 57 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR----------ESDAYGIVTMRDILKKVVAEGRDP-------------- 57 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC----------CCcEEEEEehHHHHHHHHhCCCCC--------------
Confidence 67789999999999999998889999999862 168999999999987553311000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...++.++|.+++.++++++++.+++++|.+.+.+.+||+|+ |+++|+||+
T Consensus 58 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~Gvi~~ 108 (114)
T cd04630 58 -----------------------DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN------NELIGIISL 108 (114)
T ss_pred -----------------------CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------CEEEEEEEH
Confidence 012344567778889999999999999999999999999974 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 109 ~dl~~ 113 (114)
T cd04630 109 TDIFL 113 (114)
T ss_pred HHhhc
Confidence 99975
No 44
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.39 E-value=5.9e-12 Score=103.98 Aligned_cols=106 Identities=21% Similarity=0.315 Sum_probs=89.5
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.|.+.++..+||+|++ ++++|+++..|+.......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~------------------ 53 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-----------NKLLGIVSLESLEQAYKEA------------------ 53 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-----------CcEEEEEEHHHHHHHhhcC------------------
Confidence 56788999999999999998889999999986 8999999999996532110
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
.++.++|...+.++++++++.++++.|.+.+.+++||+++ +|+++|+||+
T Consensus 54 -------------------------~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-----~g~~~Gvit~ 103 (109)
T cd04583 54 -------------------------KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-----DGKLVGLITR 103 (109)
T ss_pred -------------------------CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC-----CCeEEEEEeh
Confidence 1234456678889999999999999999999999999987 5679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 104 ~~l~~ 108 (109)
T cd04583 104 SSLVD 108 (109)
T ss_pred HHhhc
Confidence 99975
No 45
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=3.7e-12 Score=107.67 Aligned_cols=120 Identities=24% Similarity=0.307 Sum_probs=94.5
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++.+++++.++.+.|.+.+++.+||++++ ++++|+++.+++...+........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~~------------- 57 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-----------GKLVGLLTQRDLLRAALSSLSDNG------------- 57 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-----------CCEEEEEEHHHHHHHhcccccccc-------------
Confidence 56788999999999999999999999999986 899999999999875432110000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
.+.. +.....++.++|+.++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||+
T Consensus 58 --~~~~--------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 116 (122)
T cd04803 58 --EESL--------------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-----KGTLVGIITR 116 (122)
T ss_pred --cccc--------------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-----CCCEEEEEEH
Confidence 0000 001234566778888999999999999999999999999999986 4679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 117 ~dl~~ 121 (122)
T cd04803 117 SDFLR 121 (122)
T ss_pred HHhhc
Confidence 99985
No 46
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.39 E-value=3.2e-12 Score=133.55 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=112.7
Q ss_pred hcCCchHHHHHHhhCCCCCCC-CCCcccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCC
Q 013262 224 SFNPSIYEIILELKGLPFLDA-HPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGL 302 (447)
Q Consensus 224 ~l~~sIYd~~l~~kg~p~l~~-~~~~~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~ 302 (447)
++..-+++.|+..+|+-.... ...+.++.++++++|.+ ++.++++++++.++++.|.+++++.+||+|++
T Consensus 305 y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~------- 375 (454)
T TIGR01137 305 YMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEA------- 375 (454)
T ss_pred ccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------
Confidence 334455668888887632211 12344788999999998 89999999999999999998889999999986
Q ss_pred CCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCcee
Q 013262 303 ANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 382 (447)
Q Consensus 303 ~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV 382 (447)
++++|+|+.+|+.+.+...... ...++.++|.+++.++
T Consensus 376 ----~~~~Givt~~dl~~~~~~~~~~--------------------------------------~~~~v~~im~~~~~~v 413 (454)
T TIGR01137 376 ----GKVLGSVTLRELLSALFAGKAN--------------------------------------PDDAVSKVMSKKFIQI 413 (454)
T ss_pred ----CeEEEEEEHHHHHHHHhccCCC--------------------------------------cCCCHHHhcCCCCeEE
Confidence 8999999999998754321000 0113455677888899
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262 383 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 430 (447)
Q Consensus 383 ~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~ 430 (447)
++++++.+++++|.+.+ .+||++ +++++|+||++|+++++
T Consensus 414 ~~~~~l~~a~~~~~~~~---~~vV~~-----~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 414 GEGEKLSDLSKFLEKNS---SAIVTE-----EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCcCcHHHHHHHHHHCC---eeEEEE-----CCEEEEEEEHHHHHHhh
Confidence 99999999999999864 355654 46799999999999864
No 47
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=2.4e-12 Score=111.35 Aligned_cols=132 Identities=21% Similarity=0.264 Sum_probs=94.9
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.|.+++++.+||+|++ ++++|+|++.|+...+.... .+.. ..+. ....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-----------~~~~Gvi~~~dl~~~~~~~~-~~~~---~~~~-~~~~ 66 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDD-----------GRLVGIVSEGDLLRRAELGT-ERRR---ARWL-DLLA 66 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-----------CCEEEEeeHHHHHHHhcccC-cchh---hhHH-HHhc
Confidence 67889999999999999999999999999986 89999999999986543210 0000 0000 0000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...++.. ........++.++|+..+.++.+++++.++++.|.+.+.+++||+|+ |+++|+||+
T Consensus 67 ~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~------g~~~Gvit~ 129 (135)
T cd04586 67 GAEELAA-----------AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG------GRLVGIVSR 129 (135)
T ss_pred chHHHHH-----------HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC------CEEEEEEEh
Confidence 0000000 00001223577788888999999999999999999999999999974 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 130 ~di~~ 134 (135)
T cd04586 130 ADLLR 134 (135)
T ss_pred Hhhhc
Confidence 99975
No 48
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.39 E-value=5.1e-12 Score=104.07 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=87.4
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.|.+.+++.+||+|++ ++++|+++..|+.+....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-----------g~~~Giv~~~dl~~~~~~------------------- 51 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-----------GQPLGFVTRREAARASGG------------------- 51 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEeHHHHHHhccc-------------------
Confidence 56788999999999999988888999999876 899999999999652100
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
++.++|.+.+.++.+++++.+++++|.+.+...+||+|+ +++++|+||+
T Consensus 52 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~ 100 (106)
T cd04582 52 --------------------------CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE-----DGRYVGEVTQ 100 (106)
T ss_pred --------------------------chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC-----CCcEEEEEEH
Confidence 123345566778999999999999999999999999987 4679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 101 ~~l~~ 105 (106)
T cd04582 101 RSIAD 105 (106)
T ss_pred HHhhc
Confidence 99975
No 49
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=6.3e-12 Score=104.95 Aligned_cols=110 Identities=22% Similarity=0.259 Sum_probs=90.2
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
+..+++++.++.++.+.|.+.+++.+||++++ ++++|+++.+|+...+.... .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~~---~------------- 55 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN-----------GRLLGTVTDGDIRRALLKGL---S------------- 55 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC-----------CCEEEEEEcHHHHHHHhcCC---C-------------
Confidence 34678999999999999988888899999887 89999999999976543211 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....+.++|...+.++++++++.++++.|.+.+.+++||+|+ +++++|+||+
T Consensus 56 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 107 (113)
T cd04607 56 -----------------------LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDE-----EGRVVGLATL 107 (113)
T ss_pred -----------------------cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-----CCCEEEEEEh
Confidence 001244566677889999999999999999999999999986 4679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|++.
T Consensus 108 ~di~~ 112 (113)
T cd04607 108 DDLLS 112 (113)
T ss_pred HHhcc
Confidence 99874
No 50
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=6e-12 Score=107.61 Aligned_cols=126 Identities=24% Similarity=0.273 Sum_probs=93.7
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.|.+.+++.+||+|++ ++++|+|+..|+..++.......... . .
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~dl~~~~~~~~~~~~~~-----~----~ 61 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-----------GKLTGIVTRHDIVDFVVRDRDKARTG-----D----R 61 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-----------CcEEEEEEHHHHHHHHhhhhhhcchh-----h----h
Confidence 56788999999999999999999999999987 89999999999987553211000000 0 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
.. + .+.....+++++|+++++++.+++++.++++.|.+.+.+.+||+++ +.+++++|+||+
T Consensus 62 ~~-~---------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~---~~~~~~~Gvit~ 122 (128)
T cd04632 62 SG-E---------------KERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTP---DDDTKVVGILTK 122 (128)
T ss_pred hh-h---------------hhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEecc---CCCCcEEEEEEh
Confidence 00 0 0000113456778888899999999999999999999999999852 124689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 123 ~di~~ 127 (128)
T cd04632 123 KDVLR 127 (128)
T ss_pred Hhhhc
Confidence 99975
No 51
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=4e-12 Score=105.99 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=91.1
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.+.+++.+.+||++++ ++++|+|+..++.+.+....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~-------------- 56 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-----------GNLVGFLSEQDCLKQLLESSYHC-------------- 56 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-----------CeEEEEeehHHHHHHhhhhhhcc--------------
Confidence 56788999999999999988888899999986 89999999999976543211000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....++.++|+..+.++.+++++.++++.|.+.+.+++||+|+ ++++|+||+
T Consensus 57 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvit~ 108 (114)
T cd04629 57 ----------------------DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD------GKLVGQISR 108 (114)
T ss_pred ----------------------CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC------CEEEEEEEH
Confidence 0012345567778889999999999999999999999999984 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 109 ~di~~ 113 (114)
T cd04629 109 RDVLR 113 (114)
T ss_pred HHHhc
Confidence 99975
No 52
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.38 E-value=5.8e-12 Score=104.79 Aligned_cols=112 Identities=23% Similarity=0.368 Sum_probs=92.2
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+|++.|+...+.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~G~v~~~~l~~~~~~~~~~--------------- 55 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-----------GRLVGIVSLDDIREILFDPSLY--------------- 55 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-----------CCEEEEEEHHHHHHHHhccccc---------------
Confidence 56789999999999999998889999999986 8999999999997654321000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...++.++|++.+.++.+++++.++++.|.+.+.+++||+|+ + .++++|+||+
T Consensus 56 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~-~~~~~Gvvt~ 108 (114)
T cd04613 56 -----------------------DLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD---D-PGKLLGILSR 108 (114)
T ss_pred -----------------------ccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC---C-CCEEEEEEEh
Confidence 012345667788999999999999999999999999999974 1 3679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|++.
T Consensus 109 ~di~~ 113 (114)
T cd04613 109 SDLLS 113 (114)
T ss_pred HHhhc
Confidence 99975
No 53
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=7.1e-12 Score=104.41 Aligned_cols=110 Identities=21% Similarity=0.225 Sum_probs=90.0
Q ss_pred eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcch
Q 013262 265 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFS 344 (447)
Q Consensus 265 vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
+.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+|+.+.+......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----------~~~~G~v~~~dl~~~~~~~~~~---------------- 55 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-----------KRLVGIITRYDVLSYALESEEL---------------- 55 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-----------CCEEEEEEHHHHHHhhhhhhhh----------------
Confidence 4678999999999999998889999999986 8999999999997643221000
Q ss_pred HHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHH
Q 013262 345 WVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 424 (447)
Q Consensus 345 ~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~ 424 (447)
...++.++|..++.++.+++++.++++.|.+.+...+||+|+ +|+++|+||++
T Consensus 56 ----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvvt~~ 108 (113)
T cd04615 56 ----------------------KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD-----KGKVGGIVTED 108 (113)
T ss_pred ----------------------cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEEHH
Confidence 011244567778889999999999999999999999999987 46899999999
Q ss_pred HHHH
Q 013262 425 DLRA 428 (447)
Q Consensus 425 DLl~ 428 (447)
|+++
T Consensus 109 dl~~ 112 (113)
T cd04615 109 DILR 112 (113)
T ss_pred Hhhc
Confidence 9974
No 54
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=9e-12 Score=103.61 Aligned_cols=110 Identities=23% Similarity=0.304 Sum_probs=91.2
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.+++++.+.+.+.+++.+||+|++ ++++|+|+..|++..+.... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~~l~~~~~~~~-~--------------- 54 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-----------ERPIGIVTERDIVRAVAAGI-D--------------- 54 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CCEEEEeeHHHHHHHHhccC-C---------------
Confidence 56688999999999999988889999999987 89999999999976543210 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...++.++|+.++.++.+++++.++++.|.+.+...+||+++ +|+++|+||+
T Consensus 55 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gilt~ 106 (112)
T cd04624 55 -----------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-----GGELVGVISI 106 (112)
T ss_pred -----------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-----CCcEEEEEEH
Confidence 011244567778889999999999999999999999999987 4679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 107 ~dl~~ 111 (112)
T cd04624 107 RDLVR 111 (112)
T ss_pred HHhcc
Confidence 99975
No 55
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.4e-11 Score=104.64 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=90.2
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.|.+.+++.+||+|++ +++++|+|+..|+.+.+.......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----------~~~~~Giv~~~dl~~~~~~~~~~~-------------- 57 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE----------SGEVIGILSQRRLVEFLWENARSF-------------- 57 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC----------CCcEEEEEEHHHHHHHHHHhHHhc--------------
Confidence 57789999999999999998888999999872 168999999999987654321000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
+..+... ........+|..++.++++++++.+|++.|.+.+.+++||+|+ +++++|+||+
T Consensus 58 ~~~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~vGiit~ 117 (123)
T cd04627 58 PGLDPLY---------------PIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-----QGNLIGNISV 117 (123)
T ss_pred cchhhhh---------------hhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-----CCcEEEEEeH
Confidence 0000000 0011223456778889999999999999999999999999987 5679999999
Q ss_pred HHH
Q 013262 424 QDL 426 (447)
Q Consensus 424 ~DL 426 (447)
+|+
T Consensus 118 ~di 120 (123)
T cd04627 118 TDV 120 (123)
T ss_pred HHh
Confidence 997
No 56
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.36 E-value=1.2e-11 Score=102.55 Aligned_cols=108 Identities=21% Similarity=0.350 Sum_probs=89.9
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.|.+.+++.+||+++ ++++|+++.+|+++.....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~~l~~~~~~~~----------------- 52 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD------------GKLVGIVTLSDIAHAIARGL----------------- 52 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEHHHHHHHHhccc-----------------
Confidence 6778999999999999999888999999986 68999999999977543211
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...++.++|...+.++.+++++.++++.|.+.+.+.+||+++ +++++|+||+
T Consensus 53 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~ 104 (110)
T cd04588 53 -----------------------ELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-----EGRPVGIITR 104 (110)
T ss_pred -----------------------cccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC-----CCCEEEEEEh
Confidence 001244456678889999999999999999999999999986 4689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 105 ~dl~~ 109 (110)
T cd04588 105 TDILR 109 (110)
T ss_pred HHhhc
Confidence 99974
No 57
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.36 E-value=7.6e-12 Score=104.20 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=91.4
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.+.+.+++.+||++++ ++++|+++..++.+.+.... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~~i~~~~~~~~-~~-------------- 56 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-----------GRLVGIFTDGDLRRALEKGL-DI-------------- 56 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-----------CCEEEEechHHHHHHHhccC-cc--------------
Confidence 56678999999999999988888899999986 89999999999987654321 00
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....+.++|...+.++.+++++.++++.|.+.+...+||+++ +++++|+||+
T Consensus 57 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~iG~it~ 108 (114)
T cd04604 57 -----------------------LTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDD-----NGRPVGVLHI 108 (114)
T ss_pred -----------------------ccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEEEH
Confidence 001244567777889999999999999999999999999986 4679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 109 ~di~~ 113 (114)
T cd04604 109 HDLLR 113 (114)
T ss_pred HHhhc
Confidence 99975
No 58
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=6.5e-12 Score=108.14 Aligned_cols=130 Identities=20% Similarity=0.274 Sum_probs=94.9
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.+.+.+++++||+|++ ++++|+|+..++...+.......... . .
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~i~~~~l~~~~~~~~~~~~~~-----~----~ 61 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-----------GRVVGIVSEGDLIRKIYKGKGLFYVT-----L----L 61 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-----------CCEEEEEeHHHHHHHHhccCCccccc-----c----c
Confidence 56789999999999999988889999999987 89999999999987654321000000 0 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....+.. + ...+.....++.++|++++..+.+++++.+++++|.+.+.+.+||+|+ ++++|+||+
T Consensus 62 ~~~~~~~-----~----~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~iGvit~ 126 (132)
T cd04636 62 YSVIFLD-----E----SKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD------GKLVGIISR 126 (132)
T ss_pred ccccccc-----h----HHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC------CEEEEEEEH
Confidence 0000000 0 000001123577788888999999999999999999999999999984 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 127 ~dl~~ 131 (132)
T cd04636 127 GDIIR 131 (132)
T ss_pred HHhhc
Confidence 99986
No 59
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1.2e-11 Score=102.61 Aligned_cols=107 Identities=23% Similarity=0.313 Sum_probs=89.5
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++.+.++.++.+.+.+.+++.+||+|+ ++++|+++..|+...+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~dl~~~~~~~~----------------- 53 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG------------GRVVGIISRRDVEKALRHGL----------------- 53 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC------------CEEEEEEEHHHHHHHHhccc-----------------
Confidence 6778999999999999999888999999986 68999999999976442211
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...++.++|.+.+.++.+++++.+++++|.+.+.+++||+++ |+++|+||+
T Consensus 54 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvvt~ 104 (110)
T cd04595 54 -----------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVED------GRLVGIVTR 104 (110)
T ss_pred -----------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEeC------CEEEEEEEh
Confidence 012344567788899999999999999999999999999974 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 105 ~di~~ 109 (110)
T cd04595 105 TDLLR 109 (110)
T ss_pred HHhhc
Confidence 99975
No 60
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=8.3e-12 Score=105.96 Aligned_cols=124 Identities=20% Similarity=0.238 Sum_probs=94.3
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++++.|.+.+++.+||+|++ +++++|+|++.|+...+.+..... .. . ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~----------~~~~~G~v~~~dl~~~~~~~~~~~-~~-----~---~~ 62 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG----------TGKLVGIITATDILKYLGGGEKFN-KI-----K---TG 62 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCC----------CCEEEEEEEHHHHHHHhhccchhc-cc-----c---cc
Confidence 56788999999999999998889999999873 279999999999987654321000 00 0 00
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
. .......++.++|.+.+.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 63 ~------------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~~~Gvit~ 119 (125)
T cd04631 63 N------------------GLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD-----DGKLVGIVTE 119 (125)
T ss_pred c------------------cchhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-----CCcEEEEEEH
Confidence 0 0000123456677788999999999999999999999999999986 4679999999
Q ss_pred HHHHHH
Q 013262 424 QDLRAF 429 (447)
Q Consensus 424 ~DLl~~ 429 (447)
+|++++
T Consensus 120 ~di~~~ 125 (125)
T cd04631 120 RDLLKA 125 (125)
T ss_pred HHhhcC
Confidence 999863
No 61
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.1e-11 Score=105.86 Aligned_cols=124 Identities=20% Similarity=0.280 Sum_probs=91.4
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+++..|+............ .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~------------~ 58 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-----------GKLIGNISASDLKGLLLSPDDLLL------------Y 58 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-----------CcEEEEEEHHHhhhhhcCcchhhc------------c
Confidence 56789999999999999998889999999986 899999999999875432110000 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....+.. +. ....+....|..++.++++++++.+++++|.+.+.+++||+|+ +++++|+||+
T Consensus 59 ~~~~~~~-------~~------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-----~~~~~Giit~ 120 (126)
T cd04642 59 RTITFKE-------LS------EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-----EGKPIGVITL 120 (126)
T ss_pred cchhhhh-------hh------hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-----CCCEEEEEEH
Confidence 0000000 00 0001122345677889999999999999999999999999987 5689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
.|+++
T Consensus 121 ~dil~ 125 (126)
T cd04642 121 TDIIS 125 (126)
T ss_pred HHHhc
Confidence 99975
No 62
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=6.3e-12 Score=106.23 Aligned_cols=120 Identities=23% Similarity=0.359 Sum_probs=92.3
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.+.+.+++.+||+|++ ++++|++++.|++.......+.... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~~~~~~------~~---- 60 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-----------GELIGIITRRDIIRAGSVRTSVEDQ------QR---- 60 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-----------CcEEEEEEcHHHHhhccccccccch------hh----
Confidence 56789999999999999998889999999887 8999999999997532110000000 00
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
. ......++.++|.+++..+.+++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 61 ~-------------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvit~ 116 (122)
T cd04635 61 T-------------------QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-----KDQLVGIVDR 116 (122)
T ss_pred h-------------------hhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCcEEEEEEh
Confidence 0 000122345667788899999999999999999999999999987 5689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 117 ~dl~~ 121 (122)
T cd04635 117 HDVLK 121 (122)
T ss_pred HHhhc
Confidence 99985
No 63
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=9e-12 Score=104.20 Aligned_cols=115 Identities=20% Similarity=0.248 Sum_probs=89.6
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
+++++++++++.++.+.+.+.+.+.+||+|++ ++++|+++.+|+.+.+.... .. +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~~~~~~-~~--------~----- 56 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-----------GKYVGTISLTDILWKLKGLE-NL--------D----- 56 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-----------CcEEEEEeHHHHHHHhhccC-ch--------h-----
Confidence 57789999999999999998889999999986 89999999999977543210 00 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...+ ....+.++|.+.+.++.+++++.++++.|.+.+ .+||+|+ +++++|+||+
T Consensus 57 -~~~~------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-----~~~~~Gvit~ 110 (116)
T cd04643 57 -LERL------------------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD-----DGIFIGIITR 110 (116)
T ss_pred -HHHH------------------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC-----CCeEEEEEEH
Confidence 0000 012345667788899999999999999998865 5999987 5689999999
Q ss_pred HHHHHH
Q 013262 424 QDLRAF 429 (447)
Q Consensus 424 ~DLl~~ 429 (447)
+|++++
T Consensus 111 ~dil~~ 116 (116)
T cd04643 111 REILKA 116 (116)
T ss_pred HHhhcC
Confidence 999863
No 64
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1e-11 Score=103.18 Aligned_cols=109 Identities=15% Similarity=0.226 Sum_probs=89.6
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.+++++.+.+.+.+++.+||+|++ ++++|+++.+|+..+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~~~---------------- 54 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-----------EKLKGVVTFTDILDLDLFESF---------------- 54 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-----------CCEEEEEehHHhHHHHhhccc----------------
Confidence 56788999999999999998899999999886 899999999999764321100
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....+.++|.+.+.++.+++++.++++.|.+.+.+.+||+|+ |+++|+||+
T Consensus 55 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~ 105 (111)
T cd04626 55 -----------------------LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD------NKLIGVVRT 105 (111)
T ss_pred -----------------------ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEh
Confidence 001244556778889999999999999999999999999984 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04626 106 KDILD 110 (111)
T ss_pred HHhcc
Confidence 99864
No 65
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.35 E-value=1.4e-11 Score=102.06 Aligned_cols=102 Identities=44% Similarity=0.692 Sum_probs=85.8
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
.+..+++++++.++.+.+.+.+++.+||+++. .-+++++|+|+++|+.....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~~~~G~v~~~dl~~~~~~------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDST--------EESPRLVGYILRSQLVVALKN------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCC--------CCCCEEEEEEeHHHHHHHHHH-------------------
Confidence 56788999999999999998888999999871 002899999999998652210
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
+|.+++.++++++++.+++++|.+.+.+++||+++ |+++|+||+
T Consensus 56 ------------------------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------~~~~Gvvt~ 99 (105)
T cd04591 56 ------------------------------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------GRLVGIITR 99 (105)
T ss_pred ------------------------------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC------CeEEEEEEh
Confidence 45577889999999999999999999999999963 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 100 ~dl~~ 104 (105)
T cd04591 100 KDLLK 104 (105)
T ss_pred hhhhc
Confidence 99976
No 66
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=1.6e-11 Score=102.71 Aligned_cols=110 Identities=20% Similarity=0.278 Sum_probs=86.0
Q ss_pred CeeEecCCCCHHHHHHHHhcCC-CCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 342 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~-~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~ 342 (447)
++.+++++.++.++.+.+.+.+ ...+||++ + ++++|+++..|+...+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-----------~~~~G~v~~~dl~~~~~~~~~~-------------- 55 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-K-----------GRLLGIFTERDIVRLTAIGKDL-------------- 55 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-C-----------CcEEEEEeHHHHHHHHhcCCCc--------------
Confidence 4567899999999999998777 66677766 4 7899999999997654321100
Q ss_pred chHHHHhhhcccccccccchhhhhhccCccccccCCCceecCC--CCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEE
Q 013262 343 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIES--MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 420 (447)
Q Consensus 343 ~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~--~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGI 420 (447)
....+.++|...+.++.++ +++.+++++|.+.+...+||+|+ +|+++|+
T Consensus 56 ------------------------~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-----~~~~~Gv 106 (115)
T cd04620 56 ------------------------SDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-----QGQLIGL 106 (115)
T ss_pred ------------------------cccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-----CCCEEEE
Confidence 0012344566777888887 78999999999999999999987 5689999
Q ss_pred EeHHHHHH
Q 013262 421 LTRQDLRA 428 (447)
Q Consensus 421 ITr~DLl~ 428 (447)
||++|+++
T Consensus 107 it~~dl~~ 114 (115)
T cd04620 107 VTAESIRQ 114 (115)
T ss_pred EEhHHhhc
Confidence 99999976
No 67
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.34 E-value=5.8e-12 Score=131.07 Aligned_cols=127 Identities=18% Similarity=0.236 Sum_probs=104.1
Q ss_pred cccccccccccCCCCeeEecCCCCHHHHHHHHhc-----CCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRN-----TTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 324 (447)
Q Consensus 250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~-----~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~ 324 (447)
+...+|+++|++ ++++++++++++++.+.+++ .+...+||+|++ ++++|+|+.+|+... .
T Consensus 128 ~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-----------~~l~GvV~l~dLl~a--~ 192 (449)
T TIGR00400 128 YSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-----------KHLKGVLSIRDLILA--K 192 (449)
T ss_pred CCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-----------CeEEEEEEHHHHhcC--C
Confidence 345789999998 99999999999999999975 234567888876 899999999998531 0
Q ss_pred hhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEE
Q 013262 325 KWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLL 404 (447)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~Lp 404 (447)
+ ...++++|+++++++++++++.+|.+.|++++...+|
T Consensus 193 ----~--------------------------------------~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lp 230 (449)
T TIGR00400 193 ----P--------------------------------------EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVP 230 (449)
T ss_pred ----C--------------------------------------CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEe
Confidence 0 0135567778888999999999999999999999999
Q ss_pred EEeCcccCCCCcEEEEEeHHHHHHHHHhhhcCcc
Q 013262 405 VVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHL 438 (447)
Q Consensus 405 VVd~~~~~g~~~lvGIITr~DLl~~~~~~~~~~~ 438 (447)
|||+ +|+++|+||++|+++...++..+..
T Consensus 231 VVD~-----~g~lvGiIt~~Dil~~l~~~~~ed~ 259 (449)
T TIGR00400 231 VVDN-----EGRLVGIVTVDDIIDVIQSEATEDF 259 (449)
T ss_pred EEcC-----CCeEEEEEEHHHHHHHHHhhhHHHH
Confidence 9997 5689999999999998877654433
No 68
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.33 E-value=1.5e-11 Score=102.98 Aligned_cols=109 Identities=18% Similarity=0.322 Sum_probs=86.6
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.|.+.+++.+||+|+. +++++++|+++.+|+......
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~~~~G~v~~~dl~~~~~~------------------- 55 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDG--------KSGGKLLGIVTSRDIDFLTDS------------------- 55 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCC--------CcCCEEEEEEEhHHhhhhhcc-------------------
Confidence 46688999999999999988888899999862 112899999999998531100
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecC--CCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEE
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE--SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGIL 421 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~--~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGII 421 (447)
..+++++|...+.++.. ++++.++++.|++.+.+++||+|+ +++++|+|
T Consensus 56 ------------------------~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-----~~~~~Gvi 106 (114)
T cd04602 56 ------------------------ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVND-----DGELVALV 106 (114)
T ss_pred ------------------------CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC-----CCeEEEEE
Confidence 01244566666777766 999999999999999999999987 56899999
Q ss_pred eHHHHHH
Q 013262 422 TRQDLRA 428 (447)
Q Consensus 422 Tr~DLl~ 428 (447)
|++|+++
T Consensus 107 t~~di~~ 113 (114)
T cd04602 107 TRSDLKK 113 (114)
T ss_pred EHHHhhc
Confidence 9999874
No 69
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=1.7e-11 Score=106.53 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=94.6
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++++.|.+.+++.+||+|++ ++++|+|+..|+...+......... . ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~------~--~~~ 62 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-----------GKPVGVITYRDLAFAEFEDNERGLP------K--KSI 62 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-----------CCEEEEEeHHHHHHHhhcccccccc------h--hhh
Confidence 56788999999999999998889999999987 8999999999998765421100000 0 000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
. +........+.. ......+++++|...+..+.+++++.++++.|.+.+.+++||+++ ++++|+||+
T Consensus 63 ~---~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------~~~~Gvit~ 129 (135)
T cd04621 63 K---MKRKAGQKRYRY----VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN------DNIVGVITK 129 (135)
T ss_pred h---hhhhcccccccc----cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------CEEEEEEEH
Confidence 0 000000000000 000123567788888889999999999999999999999999974 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
.|+++
T Consensus 130 ~di~~ 134 (135)
T cd04621 130 TDICR 134 (135)
T ss_pred HHHhh
Confidence 99976
No 70
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.32 E-value=2e-11 Score=102.62 Aligned_cols=120 Identities=25% Similarity=0.290 Sum_probs=92.8
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.|.+.+++.+||+|+ ++++|++++.|+...........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~i~~~~l~~~~~~~~~~~-------------- 55 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR------------GKLVGIVTDRDLKLASPSKATTL-------------- 55 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC------------CeEEEEEeHHHHHHhhhcccccc--------------
Confidence 5678899999999999999888999999986 68999999999977543211000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...+.. . .....++.++|++++.++.+++++.++++.|.+.+.+.+||+++ +|+++|+||+
T Consensus 56 ~~~~~~----------~----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvvt~ 116 (122)
T cd04585 56 DIWELY----------Y----LLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD-----QGRLVGIITE 116 (122)
T ss_pred cchhhh----------h----hhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-----CCcEEEEEEH
Confidence 000000 0 00123466778888999999999999999999999999999986 4689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 117 ~di~~ 121 (122)
T cd04585 117 SDLFR 121 (122)
T ss_pred HHhhh
Confidence 99986
No 71
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.32 E-value=1.5e-11 Score=128.90 Aligned_cols=116 Identities=13% Similarity=0.164 Sum_probs=95.6
Q ss_pred ccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhh
Q 013262 259 IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE 338 (447)
Q Consensus 259 M~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~ 338 (447)
|.+ +++++++++++.++.+.|.+++++.+||+|++ +.+++++|+|+.+|+.... +
T Consensus 106 mi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~--------~~~GklvGIVT~~DL~~v~---~------------ 160 (505)
T PLN02274 106 FVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETG--------TMGSKLLGYVTKRDWDFVN---D------------ 160 (505)
T ss_pred ccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCC--------CcCCeEEEEEEHHHHhhcc---c------------
Confidence 667 88899999999999999999999999999872 0127999999999995321 0
Q ss_pred hhhcchHHHHhhhcccccccccchhhhhhccCccccccCC--CceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCc
Q 013262 339 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 416 (447)
Q Consensus 339 ~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~--p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~ 416 (447)
...+++++|.+. .+++.+++++.+++++|.+.+.+.+||||+ +++
T Consensus 161 ----------------------------~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-----~g~ 207 (505)
T PLN02274 161 ----------------------------RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-----DGE 207 (505)
T ss_pred ----------------------------cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCe
Confidence 012345566655 679999999999999999999999999987 567
Q ss_pred EEEEEeHHHHHHHHHh
Q 013262 417 VVGILTRQDLRAFNIL 432 (447)
Q Consensus 417 lvGIITr~DLl~~~~~ 432 (447)
++|+||++|+++....
T Consensus 208 LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 208 LVDLVTRTDVKRVKGY 223 (505)
T ss_pred EEEEEEHHHHHHHhhC
Confidence 9999999999987664
No 72
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=2.6e-11 Score=100.89 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=89.3
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.|.+.+++.+||+++ ++++|++++.|+...+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~i~~~~l~~~~~~~~~~~-------------- 55 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN------------DRLVGIVTDRDIVVRAVAEGRDP-------------- 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEhHHHHHHHhhccCCc--------------
Confidence 5778999999999999999889999999986 68999999999863211100000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...++.++|+..+.++.+++++.++++.|.+.+.+++||+++ .++++|+||+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~ 107 (113)
T cd04622 56 -----------------------DTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-----DGRLVGIVSL 107 (113)
T ss_pred -----------------------ccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-----CCcEEEEEEH
Confidence 011255667788889999999999999999999999999986 4679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 108 ~di~~ 112 (113)
T cd04622 108 GDLAR 112 (113)
T ss_pred HHhhc
Confidence 99975
No 73
>PRK11573 hypothetical protein; Provisional
Probab=99.32 E-value=2.2e-10 Score=117.75 Aligned_cols=135 Identities=13% Similarity=0.204 Sum_probs=109.4
Q ss_pred cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329 (447)
Q Consensus 250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~ 329 (447)
+++.+|+|+|+|+.++++++.+.+++++.+.+.+++|+.+||.+++. +.++|+|..+|++..+.++.
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~----------D~IiGiv~~kDll~~~~~~~--- 250 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSL----------DDAISMLRVREAYRLMTEKK--- 250 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCC----------CceEEEEEHHHHHHHhhccC---
Confidence 67889999999988999999999999999999999999999998652 67999999999976432210
Q ss_pred hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262 330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 409 (447)
Q Consensus 330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~ 409 (447)
..... ++.+++ ++|..|++++++.++++.|++.+.+...|+|+
T Consensus 251 ------------~~~~~-----------------------~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE- 293 (413)
T PRK11573 251 ------------EFTKE-----------------------NMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE- 293 (413)
T ss_pred ------------cCCHH-----------------------HHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-
Confidence 00000 122233 57889999999999999999999999999998
Q ss_pred ccCCCCcEEEEEeHHHHHHHHHhhhcCcc
Q 013262 410 EAAGVSPVVGILTRQDLRAFNILTAFPHL 438 (447)
Q Consensus 410 ~~~g~~~lvGIITr~DLl~~~~~~~~~~~ 438 (447)
.|...|+||.+|+++....+...+.
T Consensus 294 ----yG~~~GiVTleDilEeivGei~de~ 318 (413)
T PRK11573 294 ----YGDIQGLVTVEDILEEIVGDFTTSM 318 (413)
T ss_pred ----CCCeEEEeeHHHHHHHHhCCCCccc
Confidence 4569999999999999887665543
No 74
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.31 E-value=2.8e-11 Score=100.28 Aligned_cols=109 Identities=21% Similarity=0.313 Sum_probs=89.5
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.|.+.+.+.+||+|+ ++++|+++..|+.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~---------------- 53 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD------------GRLVGIVTLADIRRVPAEGRE---------------- 53 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC------------CeEEEEEEHHHHHHHHhcCcc----------------
Confidence 5678999999999999999888899999986 689999999999764322100
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....+.++|.+++.++.+++++.++++.|.+.+.+++||+|+ +++++|+||+
T Consensus 54 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~ 105 (111)
T cd04612 54 -----------------------ATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD-----SGRLVGIVSR 105 (111)
T ss_pred -----------------------cccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-----CCCEEEEEEH
Confidence 001233456678899999999999999999999999999986 5679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04612 106 SDLLR 110 (111)
T ss_pred HHhhh
Confidence 99975
No 75
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.31 E-value=3.3e-11 Score=99.82 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=89.8
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.|.+.+++.+||+++ ++++|+++.+|+.+......-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~~l~~~~~~~~~---------------- 53 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD------------GRPLGIVTERDILRLLASGPD---------------- 53 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEeHHHHHHHHhcCCC----------------
Confidence 4668899999999999999888889999876 689999999999765432110
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....+.++|.+.+.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~ 105 (111)
T cd04611 54 -----------------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-----DGELLGLLSQ 105 (111)
T ss_pred -----------------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-----CCcEEEEEEh
Confidence 012244567778889999999999999999999999999987 4679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04611 106 TDLLQ 110 (111)
T ss_pred HHhhc
Confidence 99975
No 76
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.31 E-value=1.5e-11 Score=119.36 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=96.1
Q ss_pred cccccccccCCCC-eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262 252 TLTVGELIDAKPP-VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 330 (447)
Q Consensus 252 ~l~v~diM~~~~~-vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~ 330 (447)
.++|+|+|.+ + +.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+.+|+.+.+....
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-----------g~~~Givt~~dl~~~~~~~~---- 216 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-----------NQLVGVFTDGDLRRALLGGG---- 216 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-----------CCEEEEEEcHHHHHHHhcCC----
Confidence 4789999998 7 8899999999999999998889999999987 89999999999976442210
Q ss_pred cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262 331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 410 (447)
Q Consensus 331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~ 410 (447)
....+++++|.+.+.++.+++++.+|+++|.+.+.+.+||+|+
T Consensus 217 -----------------------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-- 259 (268)
T TIGR00393 217 -----------------------------------SLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD-- 259 (268)
T ss_pred -----------------------------------cccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC--
Confidence 0012355677788889999999999999999999999999987
Q ss_pred cCCCCcEEEEEe
Q 013262 411 AAGVSPVVGILT 422 (447)
Q Consensus 411 ~~g~~~lvGIIT 422 (447)
+|+++|+|+
T Consensus 260 ---~g~l~GvI~ 268 (268)
T TIGR00393 260 ---HNKVLGVLH 268 (268)
T ss_pred ---CCeEEEEEC
Confidence 568999985
No 77
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.31 E-value=1.3e-11 Score=128.25 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=103.2
Q ss_pred ccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhh
Q 013262 249 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 328 (447)
Q Consensus 249 ~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~ 328 (447)
.++.+++.++|.+ +++++++++++.++.+.|.+.+++.+||+|+ ++++|+|+.+|+...
T Consensus 84 ~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~------------gklvGIVT~rDL~~~------- 142 (475)
T TIGR01303 84 TVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE------------DRPVGLVTDSDLLGV------- 142 (475)
T ss_pred HHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC------------CEEEEEEEHHHhhcC-------
Confidence 3567888899998 8899999999999999999988888888875 689999999998320
Q ss_pred hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262 329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 408 (447)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~ 408 (447)
. ...+++++|+++++++++++++.+|+++|.+.+.+++||+|+
T Consensus 143 ~-------------------------------------~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~ 185 (475)
T TIGR01303 143 D-------------------------------------RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA 185 (475)
T ss_pred C-------------------------------------CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 0 001355678889999999999999999999999999999987
Q ss_pred cccCCCCcEEEEEeHHHHHHHHHhh
Q 013262 409 YEAAGVSPVVGILTRQDLRAFNILT 433 (447)
Q Consensus 409 ~~~~g~~~lvGIITr~DLl~~~~~~ 433 (447)
+++++|+||++||++.....
T Consensus 186 -----~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 186 -----DGTLAGILTRTGALRATIYT 205 (475)
T ss_pred -----CCeEEEEEEHHHHHHHHhCC
Confidence 56799999999999876644
No 78
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.8e-11 Score=102.31 Aligned_cols=121 Identities=21% Similarity=0.321 Sum_probs=93.1
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.+.+.+++++||+|+ ++++|+++..++.+.+... +.... + .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~~~-~~~~~---~--~----- 58 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED------------NELVGVISDRDYLKAISPF-LGTAG---E--T----- 58 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC------------CeEEEEEEHHHHHHHHHHH-hcccc---c--h-----
Confidence 5678999999999999999889999999985 6899999999998755421 00000 0 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
..++. ....++.++|.++++.+.+++++.++++.|.+.+.+.+||+|+ +++++|++|+
T Consensus 59 -~~~~~----------------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-----~~~~~Gvit~ 116 (122)
T cd04637 59 -EKDLA----------------TLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE-----NGQLIGIITW 116 (122)
T ss_pred -HHHHH----------------HHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-----CCCEEEEEEH
Confidence 00000 0012356677788999999999999999999999999999986 5689999999
Q ss_pred HHHHHH
Q 013262 424 QDLRAF 429 (447)
Q Consensus 424 ~DLl~~ 429 (447)
+|++++
T Consensus 117 ~dll~~ 122 (122)
T cd04637 117 KDLLKY 122 (122)
T ss_pred HHhhhC
Confidence 999863
No 79
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=1.9e-11 Score=104.40 Aligned_cols=118 Identities=15% Similarity=0.211 Sum_probs=86.1
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++..|+......+.......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~~----------- 59 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-----------DNFIGVITAVDLLGEEPIKRIQEGGI----------- 59 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----------CcEEEEEEHHHHhhChhhHHHHHcCC-----------
Confidence 46788999999999999988888899999986 89999999999975211000000000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCcee------cCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcE
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV------IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPV 417 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV------~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~l 417 (447)
.....+++++|++.+..+ .+++++.++++.|.+.+.+++||+|+ + .|++
T Consensus 60 ---------------------~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~---~-~~~~ 114 (126)
T cd04640 60 ---------------------SRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR---E-HHQI 114 (126)
T ss_pred ---------------------CchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC---C-CCEE
Confidence 000122445665554333 37899999999999999999999997 2 2579
Q ss_pred EEEEeHHHHHH
Q 013262 418 VGILTRQDLRA 428 (447)
Q Consensus 418 vGIITr~DLl~ 428 (447)
+|+||+.|+++
T Consensus 115 ~G~it~~di~~ 125 (126)
T cd04640 115 RGIISTSDIAR 125 (126)
T ss_pred EEEEeHHHHhh
Confidence 99999999975
No 80
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.31 E-value=3.9e-11 Score=99.58 Aligned_cols=109 Identities=22% Similarity=0.364 Sum_probs=87.9
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.|.+.+++.+||++++ +++++|+++..++.+...... . .
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~----------~~~~~G~v~~~~l~~~~~~~~-~-------------~- 56 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD----------LDNIIGVVHVKDLLRALAEGE-E-------------D- 56 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC----------CceEEEEEEHHHHHHHHHcCC-C-------------c-
Confidence 57789999999999999998888999999863 168999999999987543211 0 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
..+..+| ..+.++.+++++.++++.|.+.+.+++||+|+ +++++|+||+
T Consensus 57 -------------------------~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 105 (111)
T cd04590 57 -------------------------LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-----YGGTAGLVTL 105 (111)
T ss_pred -------------------------CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-----CCCEEEEeEH
Confidence 0122233 35678999999999999999999999999987 5679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04590 106 EDILE 110 (111)
T ss_pred HHhhc
Confidence 99975
No 81
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.30 E-value=3.3e-11 Score=100.02 Aligned_cols=109 Identities=20% Similarity=0.308 Sum_probs=89.0
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.+++++.+.+.+.+++.+||+|+ ++++|+|+..++...+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~------------~~~~G~v~~~~l~~~~~~~~~~--------------- 54 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD------------GRLVGIVTDRDLRNRVVAEGLD--------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC------------CEEEEEEEhHHHHHHHhccCCC---------------
Confidence 5678999999999999998888899999986 6899999999997643221000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...++.++|...+.++++++++.++++.|.+.+.+++||+++ ++++|+||+
T Consensus 55 -----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Giit~ 105 (111)
T cd04800 55 -----------------------PDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD------GRLVGVISA 105 (111)
T ss_pred -----------------------ccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEH
Confidence 012344566788899999999999999999999999999984 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04800 106 TDLLR 110 (111)
T ss_pred HHhhc
Confidence 99974
No 82
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=4e-11 Score=99.72 Aligned_cols=110 Identities=18% Similarity=0.268 Sum_probs=86.3
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.+.+.+...++|.+ + ++++|+++.+|+.+.+.... .+ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~-----------~~~~G~v~~~dl~~~~~~~~--~~--------~---- 55 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-R-----------GELVGLLTFREVLQAMAQHG--AG--------V---- 55 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-C-----------CEEEEEEEHHHHHHHHHhcC--Cc--------h----
Confidence 567899999999999999877776676654 3 79999999999976543210 00 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....+.++|+..+.++.+++++.+++++|.+.+.+.+||+++ ++++|+||+
T Consensus 56 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------~~~~Gvvt~ 106 (112)
T cd04625 56 -----------------------LDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG------GTLLGVISF 106 (112)
T ss_pred -----------------------hcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------CEEEEEEEH
Confidence 011244566677889999999999999999999999999974 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 107 ~dl~~ 111 (112)
T cd04625 107 HDVAK 111 (112)
T ss_pred HHhhc
Confidence 99975
No 83
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.30 E-value=2.7e-11 Score=100.80 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=89.2
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.+++++.+.|.+.+.+.+||+++ ++++|+|+..|+...+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~dl~~~~~~~~~~~-------------- 55 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG------------NKLVGIFTSKDIALRVVAQGLDP-------------- 55 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC------------CEEEEEEEhHHHHHHHHhcCCCc--------------
Confidence 5678899999999999998888889999985 68999999999974332110000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...++.++|++.+.++.+++++.++++.|.+.+.+++||+++ +++++|+||+
T Consensus 56 -----------------------~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-----~~~~~Gvvs~ 107 (113)
T cd04587 56 -----------------------ESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-----SGQVVGLLDV 107 (113)
T ss_pred -----------------------CcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-----CCCEEEEEEH
Confidence 002345567788889999999999999999999999999987 4679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|++.
T Consensus 108 ~dl~~ 112 (113)
T cd04587 108 TKLTH 112 (113)
T ss_pred HHhcc
Confidence 99975
No 84
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.30 E-value=1.8e-11 Score=101.20 Aligned_cols=106 Identities=19% Similarity=0.314 Sum_probs=86.8
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.+.+.+++.+||+|++ ++++|+++.+++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~-------------------- 51 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-----------GKLVGIVTNRDLRFETD-------------------- 51 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----------CEEEEEEEhhHeeeccc--------------------
Confidence 56788999999999999988889999999986 89999999998843100
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecC-CCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEe
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE-SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 422 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~-~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIIT 422 (447)
....+.++|+..+..+.+ ++++.++++.|.+.+.+.+||+|+ +++++|+||
T Consensus 52 -----------------------~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~ 103 (110)
T cd04601 52 -----------------------LDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-----EGKLKGLIT 103 (110)
T ss_pred -----------------------CCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-----CCCEEEEEE
Confidence 001234456666677777 999999999999999999999987 467999999
Q ss_pred HHHHHH
Q 013262 423 RQDLRA 428 (447)
Q Consensus 423 r~DLl~ 428 (447)
++|+++
T Consensus 104 ~~dil~ 109 (110)
T cd04601 104 VKDIEK 109 (110)
T ss_pred hhhhhc
Confidence 999975
No 85
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.29 E-value=4.4e-11 Score=99.39 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=88.4
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++++++++++++++.+.|.+.+++.+||+|+ ++++|+++.+++...+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~~~~~~--------------- 54 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG------------DPRLGIVTRTDLLDAVLLDGLP--------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC------------CeEEEEEEHHHHHHHHHcCCCC---------------
Confidence 4568899999999999998888889999886 5799999999997654321100
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...++.++|++++..+++++++.++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 55 -----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~ 105 (111)
T cd04589 55 -----------------------SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG------GEVVGVLEQ 105 (111)
T ss_pred -----------------------CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC------CEEEEEEEh
Confidence 012344567778889999999999999999999999999974 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 106 ~dl~~ 110 (111)
T cd04589 106 TDLLS 110 (111)
T ss_pred HHhhc
Confidence 99975
No 86
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.29 E-value=2.4e-11 Score=127.52 Aligned_cols=117 Identities=17% Similarity=0.254 Sum_probs=100.1
Q ss_pred cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhccc
Q 013262 254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 333 (447)
Q Consensus 254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~ 333 (447)
.++++|.+ +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.....
T Consensus 88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-----------g~lvGiVt~~DL~~~~~---------- 144 (486)
T PRK05567 88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDEN-----------GKLVGIITNRDVRFETD---------- 144 (486)
T ss_pred hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-----------CEEEEEEEHHHhhhccc----------
Confidence 57889998 99999999999999999999999999999987 89999999999853110
Q ss_pred chhhhhhhcchHHHHhhhcccccccccchhhhhhccCcccccc-CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262 334 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 412 (447)
Q Consensus 334 ~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~-~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~ 412 (447)
...++.++|. ++++++.+++++.++++.|.+.+.+.+||+|+
T Consensus 145 ---------------------------------~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---- 187 (486)
T PRK05567 145 ---------------------------------LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---- 187 (486)
T ss_pred ---------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC----
Confidence 0012445666 67889999999999999999999999999998
Q ss_pred CCCcEEEEEeHHHHHHHHH
Q 013262 413 GVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 413 g~~~lvGIITr~DLl~~~~ 431 (447)
+++++|+||++|+++...
T Consensus 188 -~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 188 -NGRLKGLITVKDIEKAEE 205 (486)
T ss_pred -CCcEEEEEEhHHhhhhhh
Confidence 568999999999998753
No 87
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.29 E-value=1.6e-11 Score=128.54 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=98.9
Q ss_pred cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhccc
Q 013262 254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 333 (447)
Q Consensus 254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~ 333 (447)
++++.|.. +++++++++++.++.+++++.+++.+||+|++ ..+++++|+|+.+|+... . +
T Consensus 97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~--------~~~gkLvGIVt~~DL~~~--~-----~--- 156 (495)
T PTZ00314 97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDG--------KVGGKLLGIVTSRDIDFV--K-----D--- 156 (495)
T ss_pred cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCC--------ccCCeEEEEEEHHHHhhc--c-----c---
Confidence 36678888 88999999999999999999999999999873 113799999999998521 0 0
Q ss_pred chhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262 334 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 411 (447)
Q Consensus 334 ~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~ 411 (447)
...+++++|.+ +++++++++++.+++++|.+.+.+.+||+|+
T Consensus 157 ---------------------------------~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~--- 200 (495)
T PTZ00314 157 ---------------------------------KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND--- 200 (495)
T ss_pred ---------------------------------CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---
Confidence 01235566766 7889999999999999999999999999997
Q ss_pred CCCCcEEEEEeHHHHHHHHH
Q 013262 412 AGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 412 ~g~~~lvGIITr~DLl~~~~ 431 (447)
+++++|+||++|+++...
T Consensus 201 --~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 201 --NGELVALVSRSDLKKNRG 218 (495)
T ss_pred --CCcEEEEEEehHhhhccc
Confidence 567999999999998643
No 88
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.29 E-value=2.2e-11 Score=126.64 Aligned_cols=120 Identities=19% Similarity=0.323 Sum_probs=100.1
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 332 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~ 332 (447)
.+.++.|.+ +++++++++++.++++.+.+++++.+||+|++ ...++++|+|+.+||.....
T Consensus 80 k~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~--------~~~~~lvGIVt~rDL~~~~~--------- 140 (450)
T TIGR01302 80 KRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDG--------DMTGKLVGIITKRDIRFVKD--------- 140 (450)
T ss_pred ccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCC--------CCCCeEEEEEEHHHHhhhhc---------
Confidence 456888988 89999999999999999999999999999874 11158999999999953110
Q ss_pred cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCcccccc-CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262 333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 411 (447)
Q Consensus 333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~-~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~ 411 (447)
...+++++|+ .+++++++++++.+++++|.+.+.+.+||+|+
T Consensus 141 ----------------------------------~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe--- 183 (450)
T TIGR01302 141 ----------------------------------KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK--- 183 (450)
T ss_pred ----------------------------------CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC---
Confidence 0113455676 48899999999999999999999999999998
Q ss_pred CCCCcEEEEEeHHHHHHHH
Q 013262 412 AGVSPVVGILTRQDLRAFN 430 (447)
Q Consensus 412 ~g~~~lvGIITr~DLl~~~ 430 (447)
+++++|+||++|+++..
T Consensus 184 --~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 184 --NGELVGLITMKDIVKRR 200 (450)
T ss_pred --CCcEEEEEEhHHhhhcc
Confidence 56799999999999875
No 89
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.28 E-value=2.9e-11 Score=123.57 Aligned_cols=100 Identities=19% Similarity=0.241 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhcC
Q 013262 125 FFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNN 204 (447)
Q Consensus 125 ~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~ 204 (447)
..+.|++++.+|+|+|.|+|.++|++.+||++|..+++.++. ...+...+..+||||.+++++++|++++++.+|+++.
T Consensus 84 ~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~-~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~ 162 (383)
T cd00400 84 VALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL-SRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLG 162 (383)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999998763 2245668999999999999999999999999999987
Q ss_pred Cc---hHHHHHHHHHHHHHHHhhc
Q 013262 205 LL---LLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 205 ~~---~~~p~~ia~~va~~v~~~l 225 (447)
.. .+.|.++++++|+.+++.+
T Consensus 163 ~~~~~~~~~~~~~~~~a~~v~~~~ 186 (383)
T cd00400 163 EYSVASLIPVLLASVAAALVSRLL 186 (383)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHH
Confidence 66 7899999999999999987
No 90
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=6.9e-11 Score=98.27 Aligned_cols=110 Identities=22% Similarity=0.279 Sum_probs=88.9
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.+.+.+++.+||+++ ++++|+++..|+...+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~~~-------------- 55 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN------------EKPVGIITERDLVKKVVSRNLKP-------------- 55 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC------------CEEEEEEEHHHHHHHHhhccCCc--------------
Confidence 5678899999999999999888999999986 58999999999987443210000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....+.++|++.+.++.+++++.++++.|.+.+.+.+||+|+ + +++|+||+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~-~~~Gvi~~ 106 (112)
T cd04802 56 -----------------------REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-----D-ELVGIVTT 106 (112)
T ss_pred -----------------------ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-----C-EEEEEEEh
Confidence 011244566678889999999999999999999999999986 3 79999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 107 ~di~~ 111 (112)
T cd04802 107 TDIVM 111 (112)
T ss_pred hhhhc
Confidence 99974
No 91
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=4.5e-11 Score=98.08 Aligned_cols=103 Identities=19% Similarity=0.284 Sum_probs=86.3
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.|.+.+++.+||+| + ++++|+++.+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-----------~~~~Giv~~~~l~~~~~-------------------- 49 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-----------GKLVGIITSRDVRRAHP-------------------- 49 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-----------CEEEEEEehHHhhcccc--------------------
Confidence 567789999999999999888889999997 4 79999999999864210
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...+.++|++.+.++++++++.++++.|.+.+.+++||+|+ ++++|+||+
T Consensus 50 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~ 99 (105)
T cd04599 50 ------------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE------RKLVGIITK 99 (105)
T ss_pred ------------------------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------CEEEEEEEH
Confidence 01234456778899999999999999999999999999984 679999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|++.
T Consensus 100 ~~l~~ 104 (105)
T cd04599 100 GTIAL 104 (105)
T ss_pred HHhcc
Confidence 99873
No 92
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.27 E-value=7.9e-11 Score=96.71 Aligned_cols=111 Identities=26% Similarity=0.378 Sum_probs=90.9
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.+.+.+++.+||++++ ++++|+++++|+...+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~-------------- 56 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-----------GRLVGIVTERDLLRALAEGGLDP-------------- 56 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-----------CCEEEEEeHHHHHHHHHhccCCc--------------
Confidence 56788999999999999998888999999986 89999999999977553311000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...+.++|..++.++.+++++.++++.|.+.+..++||+|+ +++++|+|++
T Consensus 57 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~ 107 (113)
T cd02205 57 ------------------------LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-----EGRLVGIVTR 107 (113)
T ss_pred ------------------------cccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEEH
Confidence 00133456678889999999999999999999999999987 5789999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 108 ~dl~~ 112 (113)
T cd02205 108 SDILR 112 (113)
T ss_pred HHhhc
Confidence 99975
No 93
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=4.1e-11 Score=99.41 Aligned_cols=102 Identities=24% Similarity=0.256 Sum_probs=83.3
Q ss_pred ecCCCCHHHHHHHHhcCC-----CCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhc
Q 013262 268 LSGIEKVSQIVDVLRNTT-----HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 342 (447)
Q Consensus 268 l~~~~tv~~~~~~L~~~~-----~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~ 342 (447)
+.+++++.++++.|.+++ +..+||+|++ ++++|+|+.+++... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----------~~~~G~v~~~~l~~~---~---~------------- 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-----------GRLLGVVSLRDLLLA---D---P------------- 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-----------CCEEEEEEHHHHhcC---C---C-------------
Confidence 567889999999998766 3679999876 899999999888531 0 0
Q ss_pred chHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEe
Q 013262 343 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 422 (447)
Q Consensus 343 ~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIIT 422 (447)
..++.++|+.++..+.+++++.++++.|.+.+.+++||+|+ +++++|+||
T Consensus 52 -------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit 101 (109)
T cd04606 52 -------------------------DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE-----EGRLVGIIT 101 (109)
T ss_pred -------------------------cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-----CCcEEEEEE
Confidence 01234456677889999999999999999999999999987 568999999
Q ss_pred HHHHHHH
Q 013262 423 RQDLRAF 429 (447)
Q Consensus 423 r~DLl~~ 429 (447)
+.|++++
T Consensus 102 ~~dll~~ 108 (109)
T cd04606 102 VDDVIDV 108 (109)
T ss_pred hHHhhhh
Confidence 9999875
No 94
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.26 E-value=3.4e-11 Score=128.67 Aligned_cols=162 Identities=19% Similarity=0.158 Sum_probs=113.2
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh--h
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ--E 330 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~--~ 330 (447)
.+|+|+|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+...+.+.+-.. .
T Consensus 68 ~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~l~Givt~~di~~~~~~~~~~~~~~ 134 (546)
T PRK14869 68 PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-----------GKLLGLVSLSDLARAYMDILDPEILS 134 (546)
T ss_pred CcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHhhcchhhhh
Confidence 689999998 89999999999999999999999999999987 89999999999988665432100 0
Q ss_pred cccchhhhhhh------------------cc--------hHHHHhhhcc----------------------------ccc
Q 013262 331 KRRTEEWEVRE------------------KF--------SWVELAEREG----------------------------KIE 356 (447)
Q Consensus 331 ~~~~~~~~~~~------------------~~--------~~~d~~~~~~----------------------------~~~ 356 (447)
.....-.++.+ .+ ...+...++. .+.
T Consensus 135 ~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~ 214 (546)
T PRK14869 135 KSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVS 214 (546)
T ss_pred hcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCC
Confidence 00000000000 00 0000000000 000
Q ss_pred -------------------ccccchhhhhhccCcccccc-CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCc
Q 013262 357 -------------------EVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 416 (447)
Q Consensus 357 -------------------~~~l~~~~~~~~idl~~im~-~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~ 416 (447)
+..-+........+++++|+ +++.++++++++.++.+.|.+.+.+++||+|+ +|+
T Consensus 215 ~~v~~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-----~g~ 289 (546)
T PRK14869 215 EDVLELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-----DGK 289 (546)
T ss_pred HHHHHHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC-----CCC
Confidence 00000111234567889999 89999999999999999999999999999997 578
Q ss_pred EEEEEeHHHHHHHHHh
Q 013262 417 VVGILTRQDLRAFNIL 432 (447)
Q Consensus 417 lvGIITr~DLl~~~~~ 432 (447)
++|+||++|+++...+
T Consensus 290 lvGiit~~dl~~~~~~ 305 (546)
T PRK14869 290 VVGVISRYHLLSPVRK 305 (546)
T ss_pred EEEEEEHHHhhccccC
Confidence 9999999999986554
No 95
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.26 E-value=5.9e-11 Score=98.00 Aligned_cols=109 Identities=24% Similarity=0.322 Sum_probs=86.1
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++.+.+.+.+++.+||+++ ++++|+++..|+.+.+..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~dl~~~~~~~~~-~-------------- 54 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------------GRVVGSIDESDLLDALIEGKA-K-------------- 54 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------------CeeEEEEeHHHHHHHHhcccc-c--------------
Confidence 5678899999999999999989999999986 689999999999875432110 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
...++.++|++.+.++++++++.++.++|.+ . ..+||+++ +++++|+||+
T Consensus 55 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-----~~~~~Gvvt~ 104 (110)
T cd04609 55 -----------------------FSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE-----GGKFVGIITR 104 (110)
T ss_pred -----------------------cCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec-----CCeEEEEEeH
Confidence 0012344566778899999999999999998 3 34788887 5679999999
Q ss_pred HHHHHH
Q 013262 424 QDLRAF 429 (447)
Q Consensus 424 ~DLl~~ 429 (447)
+|+++|
T Consensus 105 ~di~~~ 110 (110)
T cd04609 105 ADLLKY 110 (110)
T ss_pred HHhhcC
Confidence 999864
No 96
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.25 E-value=7.7e-11 Score=97.03 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=84.1
Q ss_pred eEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchH
Q 013262 266 ITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSW 345 (447)
Q Consensus 266 v~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~ 345 (447)
.++++++++.++.+.+.+.+++.+||+|+ ++++|+++.+|+.....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~---------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY------------NKFLGAVYLKDIENATY---------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC------------CEEEEEEEHHHHhhhcc----------------------
Confidence 46789999999999999889999999985 68999999999854110
Q ss_pred HHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHH
Q 013262 346 VELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD 425 (447)
Q Consensus 346 ~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~D 425 (447)
.++.++|...+.++++++++.++++.|.+.+.+.+||+|+ ++++|+||++|
T Consensus 50 -----------------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~iGvit~~d 100 (104)
T cd04594 50 -----------------------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------GKFKGIVTLDS 100 (104)
T ss_pred -----------------------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------CEEEEEEEHHH
Confidence 0133456677889999999999999999999999999974 57999999999
Q ss_pred HHH
Q 013262 426 LRA 428 (447)
Q Consensus 426 Ll~ 428 (447)
+++
T Consensus 101 l~~ 103 (104)
T cd04594 101 ILD 103 (104)
T ss_pred hhc
Confidence 875
No 97
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.25 E-value=1.2e-10 Score=97.47 Aligned_cols=113 Identities=22% Similarity=0.301 Sum_probs=93.9
Q ss_pred ccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchh
Q 013262 257 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEE 336 (447)
Q Consensus 257 diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~ 336 (447)
++|.+ +++++.++.++.++...|.+++...+||++. .+++|+|+.+|+.+.+......
T Consensus 3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~------------~~l~Giit~~di~~~~~~~~~~-------- 60 (117)
T COG0517 3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD------------GKLVGIITERDILRALAAGGKR-------- 60 (117)
T ss_pred ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEHHHHHHHHhccCCc--------
Confidence 44556 8899999999999999999999999999986 4899999999998866432100
Q ss_pred hhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHH-cCCCEEEEEeCcccCCCC
Q 013262 337 WEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQ-VGLRHLLVVPKYEAAGVS 415 (447)
Q Consensus 337 ~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~-~gl~~LpVVd~~~~~g~~ 415 (447)
...+.++|..++.++.+++++.++.+.|.+ .+.+++||+++ ++
T Consensus 61 -------------------------------~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-----~~ 104 (117)
T COG0517 61 -------------------------------LLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-----DG 104 (117)
T ss_pred -------------------------------cccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-----CC
Confidence 002455677788999999999999999999 69999999997 44
Q ss_pred -cEEEEEeHHHHH
Q 013262 416 -PVVGILTRQDLR 427 (447)
Q Consensus 416 -~lvGIITr~DLl 427 (447)
+++|++|++|++
T Consensus 105 ~~lvGivt~~di~ 117 (117)
T COG0517 105 GKLVGIITLSDIL 117 (117)
T ss_pred CeEEEEEEHHHcC
Confidence 899999999973
No 98
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.25 E-value=4.4e-11 Score=122.96 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=99.1
Q ss_pred ChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHH
Q 013262 100 TNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLG 179 (447)
Q Consensus 100 ~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G 179 (447)
+|...++..++.+. .... .-.++.|++.+++++|+|.|+|.+.|++.+||++|..+++.++. ...+...+..+|
T Consensus 65 ~G~~~v~~~l~~~~-~~~~----~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~-~~~~~~~l~~~g 138 (402)
T cd01031 65 SGIPQVEGVLAGLL-PPNW----WRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT-SPEERRQLIAAG 138 (402)
T ss_pred CCHHHHHHHHcCCC-Cccc----HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 34555666666432 1112 23466899999999999999999999999999999999998764 234567899999
Q ss_pred HHHHHHhhhchhHHHHHHHHH-hhcCCc--hHHHHHHHHHHHHHHHhhc
Q 013262 180 AASLMAGSMRMTVSLCVIFLE-LTNNLL--LLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 180 ~aa~~~g~~~~p~s~~vi~~E-~t~~~~--~~~p~~ia~~va~~v~~~l 225 (447)
|||.++++.++|++++++.+| ++++++ .+.|+++++++|+.+.+.+
T Consensus 139 ~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 187 (402)
T cd01031 139 AAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF 187 (402)
T ss_pred HHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 778766 7999999999999998875
No 99
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=7.8e-11 Score=99.33 Aligned_cols=119 Identities=23% Similarity=0.298 Sum_probs=91.5
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.|.+.+++.+||+|+ ++++|+++..++...+.... ..+..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~------------~~~~G~v~~~~l~~~~~~~~-~~~~~----------- 57 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG------------GKLVGIVTEKDIADALRSFR-PLVRD----------- 57 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC------------CEEEEEEchHHHHHhhhhhh-hcccc-----------
Confidence 5678999999999999998888899999985 79999999999987543211 00000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
. .. .......++.++|..++.++.+++++.+++++|.+.+.+++||+|+ ++++|+||+
T Consensus 58 ~--~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~ 115 (121)
T cd04633 58 R--HQ--------------ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD------GKLVGIVTR 115 (121)
T ss_pred h--hh--------------hhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC------CEEEEEEEH
Confidence 0 00 0000123455677788999999999999999999999999999984 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 116 ~dl~~ 120 (121)
T cd04633 116 TDILR 120 (121)
T ss_pred HHhhc
Confidence 99985
No 100
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=9.7e-11 Score=96.42 Aligned_cols=104 Identities=24% Similarity=0.418 Sum_probs=87.1
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++.+.++.++.+.+.+.+.+.+||+|+ ++++|+++..+|... . .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~------------~~~~g~v~~~~l~~~--~----~-------------- 50 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN------------GKVVGIVSARDLLGK--D----P-------------- 50 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEHHHhhcc--C----c--------------
Confidence 6778999999999999998888888999875 689999999998531 0 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
..+++++|...+.++.+++++.++++.|.+.+.+.+||+++ +|+++|+|++
T Consensus 51 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvi~~ 101 (107)
T cd04610 51 ------------------------DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-----NNNLVGIITN 101 (107)
T ss_pred ------------------------cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-----CCeEEEEEEH
Confidence 01244556677889999999999999999999999999987 4689999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 102 ~di~~ 106 (107)
T cd04610 102 TDVIR 106 (107)
T ss_pred HHhhc
Confidence 99975
No 101
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.22 E-value=1.2e-10 Score=98.05 Aligned_cols=119 Identities=24% Similarity=0.333 Sum_probs=91.5
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++++.++.++.+.+.+.+++.+||+|++ ++++|+++..++........ .....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~-~~~~~----------- 58 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-----------GRLVGIVTDRDLRDASPSPF-TTLSE----------- 58 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-----------CcEEEEEEHHHHHHHhhhhc-ccchh-----------
Confidence 56788999999999999998889999999987 89999999999976432110 00000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
.+. ......+++++|...+.++.+++++.++++.|.+.+..++||+++ ++++|+||.
T Consensus 59 --~~~---------------~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvv~~ 115 (121)
T cd04584 59 --HEL---------------YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED------GRLVGIITE 115 (121)
T ss_pred --hhh---------------hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC------CEEEEEEEH
Confidence 000 000123455677788899999999999999999999999999974 579999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 116 ~di~~ 120 (121)
T cd04584 116 TDLLR 120 (121)
T ss_pred HHhhc
Confidence 99975
No 102
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=2.3e-10 Score=96.16 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=87.9
Q ss_pred CeeEecCCCCHHHHHHHHhcCC-CCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 342 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~-~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~ 342 (447)
++.++++++++.++.+.++..+ ++.+||+|+ ++++|+|+.+|+..++...+ .. +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~------------~~~~G~v~~~~l~~~~~~~~-~~--------~~--- 57 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD------------GRPVGLIMREALMELLSTPY-GR--------AL--- 57 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC------------CeeEEEEEHHHHHHHHhchh-hH--------HH---
Confidence 5567899999999999998776 889999986 68999999999976543211 00 00
Q ss_pred chHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCE---EEEEeCcccCCCCcEEE
Q 013262 343 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRH---LLVVPKYEAAGVSPVVG 419 (447)
Q Consensus 343 ~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~---LpVVd~~~~~g~~~lvG 419 (447)
....++.++|+.++.++.+++++.++++.|.+.+.++ .+|+++ +++++|
T Consensus 58 -----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-----~~~~~G 109 (119)
T cd04598 58 -----------------------YGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-----EGRYLG 109 (119)
T ss_pred -----------------------HcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-----CCeEEE
Confidence 0012355678888999999999999999999998653 368876 578999
Q ss_pred EEeHHHHHH
Q 013262 420 ILTRQDLRA 428 (447)
Q Consensus 420 IITr~DLl~ 428 (447)
+||++|+++
T Consensus 110 vvs~~di~~ 118 (119)
T cd04598 110 IGTVKDLLR 118 (119)
T ss_pred EEEHHHHhc
Confidence 999999975
No 103
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=2.9e-10 Score=99.55 Aligned_cols=136 Identities=23% Similarity=0.289 Sum_probs=95.1
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh----cc-cchhhh
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE----KR-RTEEWE 338 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~----~~-~~~~~~ 338 (447)
+++++++++++.++.+.|.+++++++||+|+ ++++|++++.|+...+........ +. ......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG------------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELP 69 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC------------CeEEEEecHHHHHHHHHhccCccccccCCcceeeecc
Confidence 5678999999999999999999999999985 689999999999876653221000 00 000000
Q ss_pred hhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEE
Q 013262 339 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVV 418 (447)
Q Consensus 339 ~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lv 418 (447)
..+...+.+.... .+.....++.++|+..+.++.+++++.++++.|.+.+.+++||+++ ++++
T Consensus 70 ~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~~ 132 (143)
T cd04634 70 LREFINWEETKRA-----------LTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED------GRLV 132 (143)
T ss_pred chheeehHHHHHH-----------HHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEE
Confidence 0000111111100 0001234566788889999999999999999999999999999984 5799
Q ss_pred EEEeHHHHHH
Q 013262 419 GILTRQDLRA 428 (447)
Q Consensus 419 GIITr~DLl~ 428 (447)
|+||++|+++
T Consensus 133 Gvvt~~dl~~ 142 (143)
T cd04634 133 GIVTRGDIIE 142 (143)
T ss_pred EEEEHHHhhc
Confidence 9999999874
No 104
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=3.3e-10 Score=93.34 Aligned_cols=104 Identities=27% Similarity=0.352 Sum_probs=86.3
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.+++.+.++.++.+.+.+.+++.+||++++ ++++|+++.+++.... . +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~g~v~~~~l~~~~---~---~------------- 51 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-----------GELVGIITRKDLLRNP---E---E------------- 51 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-----------CcEEEEEEHHHHHhcc---c---c-------------
Confidence 56788899999999999988888999999986 7899999999985410 0 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
..+.++|...+.++.+++++.++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 52 -------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~G~it~ 100 (106)
T cd04638 52 -------------------------EQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------GKLVGIVTV 100 (106)
T ss_pred -------------------------chHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEH
Confidence 0123445677889999999999999999999999999985 479999999
Q ss_pred HHHHH
Q 013262 424 QDLRA 428 (447)
Q Consensus 424 ~DLl~ 428 (447)
+|+++
T Consensus 101 ~d~~~ 105 (106)
T cd04638 101 ADIVR 105 (106)
T ss_pred HHhhc
Confidence 99875
No 105
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.16 E-value=1.3e-10 Score=118.62 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=107.3
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 331 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~ 331 (447)
..+++++|.. +.+++++..++.++.+.|.+.+.+...|++++ +.+.|+||++|+........
T Consensus 148 ~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-----------~~~~GIvT~~dl~~~v~~~g----- 209 (610)
T COG2905 148 LTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-----------GPLLGIVTRKDLRSRVIADG----- 209 (610)
T ss_pred HHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-----------CCccceeehHHHHHHHHhcC-----
Confidence 4578999998 89999999999999999999999988888887 89999999999987543211
Q ss_pred ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262 332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 411 (447)
Q Consensus 332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~ 411 (447)
.+...+++++|+.++++|.+++.+.+|+-+|.+.+++|+||+++
T Consensus 210 ---------------------------------~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~--- 253 (610)
T COG2905 210 ---------------------------------RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED--- 253 (610)
T ss_pred ---------------------------------CCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC---
Confidence 11234688899999999999999999999999999999999974
Q ss_pred CCCCcEEEEEeHHHHHHHHHh
Q 013262 412 AGVSPVVGILTRQDLRAFNIL 432 (447)
Q Consensus 412 ~g~~~lvGIITr~DLl~~~~~ 432 (447)
|+++||||..||++....
T Consensus 254 ---gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 254 ---GQPLGILTLTDILRLFSQ 271 (610)
T ss_pred ---CeeeEEeeHHHHHHhhCC
Confidence 679999999999987664
No 106
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.14 E-value=7e-10 Score=114.90 Aligned_cols=133 Identities=21% Similarity=0.312 Sum_probs=109.0
Q ss_pred cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329 (447)
Q Consensus 250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~ 329 (447)
+++.+|+++|+++.++..++.+.+++++.+.+.+++|+.+||.+++ .+.++|+|+.+||+..+.+...
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~----------~D~iiGiv~~Kdll~~~~~~~~-- 270 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD----------LDNIIGIVHVKDLLRALLDGQS-- 270 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----------CCcEEEEEEHHHHHHHHhcCcc--
Confidence 6788999999998899999999999999999999999999999943 2789999999999875543210
Q ss_pred hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262 330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 409 (447)
Q Consensus 330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~ 409 (447)
..+....+ ++|+.|++.+++.++++.|++.+.+...|+|+
T Consensus 271 --------------------------------------~~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE- 310 (429)
T COG1253 271 --------------------------------------DLDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE- 310 (429)
T ss_pred --------------------------------------ccchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-
Confidence 00011111 37889999999999999999999999999998
Q ss_pred ccCCCCcEEEEEeHHHHHHHHHhhhcCcc
Q 013262 410 EAAGVSPVVGILTRQDLRAFNILTAFPHL 438 (447)
Q Consensus 410 ~~~g~~~lvGIITr~DLl~~~~~~~~~~~ 438 (447)
.|.+.|+||.+|+++...-+...+-
T Consensus 311 ----yG~~~GlVTleDIiEeIvGei~de~ 335 (429)
T COG1253 311 ----YGGVEGLVTLEDIIEEIVGEIPDEH 335 (429)
T ss_pred ----CCCeEEEeEHHHHHHHHhCCCcCcc
Confidence 4569999999999998887655443
No 107
>PRK05277 chloride channel protein; Provisional
Probab=99.14 E-value=3.4e-10 Score=117.62 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=96.8
Q ss_pred ChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHH
Q 013262 100 TNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLG 179 (447)
Q Consensus 100 ~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G 179 (447)
+|...++..++... .+.+ .-.+..|++.+.+++|+|.|+|.+.|++.+||++|..++..++.....+...+..+|
T Consensus 72 sGi~~i~~~l~~~~--~~~~---~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~~~~~~~~li~~G 146 (438)
T PRK05277 72 SGIPEIEGALEGLR--PVRW---WRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLRSDEARHTLLAAG 146 (438)
T ss_pred CCHHHHHHHHcCCC--ccch---HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 44555666666431 2221 123468999999999999999999999999999999999988642234566799999
Q ss_pred HHHHHHhhhchhHHHHHHHHH-hhcC--Cc--hHHHHHHHHHHHHHHHhhc
Q 013262 180 AASLMAGSMRMTVSLCVIFLE-LTNN--LL--LLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 180 ~aa~~~g~~~~p~s~~vi~~E-~t~~--~~--~~~p~~ia~~va~~v~~~l 225 (447)
|||.+++++++|++++++.+| +++. ++ .+.|+++++++|+.+.+.+
T Consensus 147 ~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 197 (438)
T PRK05277 147 AAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLF 197 (438)
T ss_pred HHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 6663 34 4789999999999998876
No 108
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.08 E-value=3.9e-10 Score=115.70 Aligned_cols=127 Identities=23% Similarity=0.236 Sum_probs=106.6
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcC-----CCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhh
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW 326 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~-----~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~ 326 (447)
.-+|+.+|++ +.++++++.|++++++.+++. ....+.|+|++ ++++|+++.++|+.. +
T Consensus 131 e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-----------~~L~Gvvsl~~Ll~a--~-- 193 (451)
T COG2239 131 EDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-----------GKLLGVVSLRDLLTA--E-- 193 (451)
T ss_pred hhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-----------cceEEEeeHHHHhcC--C--
Confidence 3578999999 999999999999999999843 35678899987 899999999998531 0
Q ss_pred hhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEE
Q 013262 327 FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVV 406 (447)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVV 406 (447)
....+.++|++.+++|.+++..+++.++|+++++-.+|||
T Consensus 194 ----------------------------------------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVV 233 (451)
T COG2239 194 ----------------------------------------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVV 233 (451)
T ss_pred ----------------------------------------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceE
Confidence 0112556788889999999999999999999999999999
Q ss_pred eCcccCCCCcEEEEEeHHHHHHHHHhhhcCcccc
Q 013262 407 PKYEAAGVSPVVGILTRQDLRAFNILTAFPHLER 440 (447)
Q Consensus 407 d~~~~~g~~~lvGIITr~DLl~~~~~~~~~~~~~ 440 (447)
|+ +++++|+||-.|+++...++..+...+
T Consensus 234 d~-----~~~LiG~itiDDiidvi~eEa~eDi~~ 262 (451)
T COG2239 234 DE-----DNRLIGIITIDDIIDVIEEEATEDILR 262 (451)
T ss_pred CC-----CCceeeeeeHHHHHHHHHHHHHHHHHH
Confidence 98 678999999999999888776655443
No 109
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.06 E-value=1.2e-09 Score=106.72 Aligned_cols=132 Identities=20% Similarity=0.312 Sum_probs=110.1
Q ss_pred cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329 (447)
Q Consensus 250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~ 329 (447)
+++++|+|+|.++.++..++.+++.+++++.+....|+.+||-.++. +..+|++..+|+++++.++.
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~----------DnIiGvlh~r~llr~l~e~~--- 263 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL----------DNIIGVLHVRDLLRLLNEKN--- 263 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh----------hHhhhhhhHHHHHHHhhccC---
Confidence 67899999999988899999999999999999999999999998762 45999999999999886542
Q ss_pred hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262 330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 409 (447)
Q Consensus 330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~ 409 (447)
.++-.|+.+ . -..|+.|++.+++.+-+..|++.+-+.-.|||+
T Consensus 264 ------------~~~k~d~~~-----------------------~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE- 306 (423)
T COG4536 264 ------------EFTKEDILR-----------------------A-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE- 306 (423)
T ss_pred ------------cccHhHHHH-----------------------H-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-
Confidence 011122221 1 157899999999999999999999999999999
Q ss_pred ccCCCCcEEEEEeHHHHHHHHHhhhc
Q 013262 410 EAAGVSPVVGILTRQDLRAFNILTAF 435 (447)
Q Consensus 410 ~~~g~~~lvGIITr~DLl~~~~~~~~ 435 (447)
.|.+.|+||.+|++++..-+..
T Consensus 307 ----YG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 307 ----YGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred ----cCcEEeeeeHHHHHHHHhcccc
Confidence 4569999999999998775544
No 110
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.98 E-value=4.1e-09 Score=91.46 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=79.8
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++.++++++++.++++.|...+++.+||+|++ ++++|+|+..|+++.+...+.........-.. .+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-----------g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 69 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-----------DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQ-TNTC 69 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHHHHHHhhccccccccchhhcc-cccc
Confidence 57789999999999999998889999999987 89999999999988664322110000000000 0000
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 408 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~ 408 (447)
...+++. ...+.+.|..+++++++++++.+|+++|.+.+.+++||+|+
T Consensus 70 ~v~~i~~-----------------~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 70 LVSSVCT-----------------KGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred cHHHHhh-----------------hhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 0001110 00122334567889999999999999999999999999986
No 111
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.93 E-value=9.3e-09 Score=104.89 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhh--c
Q 013262 126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT--N 203 (447)
Q Consensus 126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t--~ 203 (447)
...|++++.+++++|.|+|.+.|+..+||++|..+++.++. ...+...+..+||||.++++.++|++++++.+|++ +
T Consensus 78 ~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~-~~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~ 156 (378)
T cd03682 78 APLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKL-PEEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLG 156 (378)
T ss_pred HHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Confidence 34699999999999999999999999999999999998763 12244578999999999999999999999999997 3
Q ss_pred C--CchHHHHHHHHHHHHHHHhhc
Q 013262 204 N--LLLLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 204 ~--~~~~~p~~ia~~va~~v~~~l 225 (447)
+ +..+.|.++++++++.+++.+
T Consensus 157 ~~~~~~~~~~~i~~~~a~~v~~~~ 180 (378)
T cd03682 157 RLRYSALIPCLVAAIVADWVSHAL 180 (378)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3 456889999999999988766
No 112
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.92 E-value=3.4e-09 Score=77.48 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=50.6
Q ss_pred cccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262 372 HPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 372 ~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~ 431 (447)
+++|+++++++++++++.++++.|++.+.+++||+|+ +++++|+||++|++++..
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-----~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-----DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-----TSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-----CCEEEEEEEHHHHHhhhh
Confidence 3578899999999999999999999999999999987 578999999999998764
No 113
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.79 E-value=1.1e-08 Score=94.11 Aligned_cols=129 Identities=22% Similarity=0.328 Sum_probs=104.7
Q ss_pred ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262 251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 330 (447)
Q Consensus 251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~ 330 (447)
.+++|+|+|.++...++++.+.++.+.+..+.++.|+.|||+.++. ..+.|++..+||+..+....
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edk----------D~v~GIL~AKDLL~~~~~~~---- 130 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK----------DHVEGILLAKDLLPFMRSDA---- 130 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCc----------hhhhhhhhHHHHHHHhcCCc----
Confidence 4689999999977899999999999999999999999999998752 67899999999998764311
Q ss_pred cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262 331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 410 (447)
Q Consensus 331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~ 410 (447)
...++.++. ++.+.|++.-.+...++-|+....+...|+|+
T Consensus 131 ------------------------------------~~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDE-- 171 (293)
T COG4535 131 ------------------------------------EPFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-- 171 (293)
T ss_pred ------------------------------------ccccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEec--
Confidence 001222222 55678999999999999999999999999998
Q ss_pred cCCCCcEEEEEeHHHHHHHHHhhhc
Q 013262 411 AAGVSPVVGILTRQDLRAFNILTAF 435 (447)
Q Consensus 411 ~~g~~~lvGIITr~DLl~~~~~~~~ 435 (447)
-|-+-|+||..|++....-..-
T Consensus 172 ---fGgVsGLVTIEDiLEqIVGdIE 193 (293)
T COG4535 172 ---FGGVSGLVTIEDILEQIVGDIE 193 (293)
T ss_pred ---cCCeeeeEEHHHHHHHHhcccc
Confidence 3459999999999986654433
No 114
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.78 E-value=5.4e-08 Score=104.70 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhh-cC
Q 013262 126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NN 204 (447)
Q Consensus 126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t-~~ 204 (447)
...|++.+++|+|+|.|.|...|+..+||++|..+++.++.. .........+|+||.+|+++++|++++++.+|.+ ++
T Consensus 118 ~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~~-~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~ 196 (574)
T PRK01862 118 SLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHFD-PPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGS 196 (574)
T ss_pred HHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhh
Confidence 346999999999999999999999999999999999998631 2233567889999999999999999999999975 55
Q ss_pred Cc--hHHHHHHHHHHHHHHHhhc
Q 013262 205 LL--LLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 205 ~~--~~~p~~ia~~va~~v~~~l 225 (447)
+. .+.|.++++++|+.+.+.+
T Consensus 197 ~~~~~~~~~~~as~~a~~v~~~~ 219 (574)
T PRK01862 197 IAMESFGPLVVASVVANIVMREF 219 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 53 6889999999999999876
No 115
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=98.78 E-value=5.3e-08 Score=98.56 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhc-C
Q 013262 126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-N 204 (447)
Q Consensus 126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~-~ 204 (447)
.+.|++.+.+|.|+|.|.|...|+..+||++|..+++.++......-..+..+|+||.++++.++|++++++.+|... +
T Consensus 41 ~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~ 120 (355)
T PF00654_consen 41 LPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLSRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRD 120 (355)
T ss_dssp HHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHC
T ss_pred HHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhcccchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeecc
Confidence 448999999999999999999999999999999999997742222144599999999999999999999999999855 3
Q ss_pred --CchHHHHHHHHHHHHHHHhhc
Q 013262 205 --LLLLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 205 --~~~~~p~~ia~~va~~v~~~l 225 (447)
+..+.|.++++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~as~~a~~v~~~~ 143 (355)
T PF00654_consen 121 FSVRLLLPALVASIVATLVSRLL 143 (355)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHH
Confidence 458999999999999999987
No 116
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.76 E-value=2e-08 Score=73.34 Aligned_cols=55 Identities=33% Similarity=0.611 Sum_probs=51.8
Q ss_pred ccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262 255 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 322 (447)
Q Consensus 255 v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L 322 (447)
|+|+|.+ +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++||++++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDED-----------GKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----------SBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----------CEEEEEEEHHHHHhhh
Confidence 5789999 99999999999999999999999999999987 9999999999998865
No 117
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=98.74 E-value=9.3e-08 Score=99.30 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=95.8
Q ss_pred hHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHH
Q 013262 101 NDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGA 180 (447)
Q Consensus 101 ~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~ 180 (447)
+-+.+...++.. .+++++.. ..+|++++.+++|+|.+.|...|+..+|+++|..++..++.. ..+-.....+|+
T Consensus 93 Gi~~~i~a~~~~-~~~~~~~~----~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~~-~~~~r~Ll~~Ga 166 (443)
T COG0038 93 GIPQAIEALHGR-KGRISPRV----LPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKLS-REDRRILLAAGA 166 (443)
T ss_pred ChhHHHHHHhcC-CCcccHHH----HHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 333344444432 23445543 335999999999999999999999999999999999999742 245567899999
Q ss_pred HHHHHhhhchhHHHHHHHHHhhcC----CchHHHHHHHHHHHHHHHhhc
Q 013262 181 ASLMAGSMRMTVSLCVIFLELTNN----LLLLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 181 aa~~~g~~~~p~s~~vi~~E~t~~----~~~~~p~~ia~~va~~v~~~l 225 (447)
||-+|++.++|++++++.+|.-.. +..+.|+++++++|+.+.+.+
T Consensus 167 AaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~ 215 (443)
T COG0038 167 AAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLF 215 (443)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999997543 347999999999999999987
No 118
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.68 E-value=9e-08 Score=98.77 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHh-hcC
Q 013262 126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLEL-TNN 204 (447)
Q Consensus 126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~-t~~ 204 (447)
...|++.+.+++|+|.|.|...|+..+||++|..+++.++. ..+...+..+|+||-++++.++|++++++.+|. .++
T Consensus 100 ~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~~--~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~ 177 (418)
T PRK01610 100 SLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTP--RQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGT 177 (418)
T ss_pred HHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999872 455678999999999999999999999999996 454
Q ss_pred Cc--hHHHHHHHHHHHHHHHhhc
Q 013262 205 LL--LLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 205 ~~--~~~p~~ia~~va~~v~~~l 225 (447)
+. .+.|+++++++++.+++.+
T Consensus 178 ~~~~~~~p~~ias~~a~~v~~~~ 200 (418)
T PRK01610 178 LMLASLGPVVISAVVALLTTNLL 200 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 43 6889999999999999876
No 119
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.67 E-value=2.3e-07 Score=94.18 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=98.8
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
++..+.+++++.++++.|.+.+.+++|||+.. ++.+|.+++.|+..+.....+..... .
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-----------g~~v~~~s~~Dv~~l~~~~~~~~~~~---------~- 296 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDEN-----------GKKVGNYSRFDVIHLAREGTYNNLDL---------S- 296 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-----------CceecceehhhhhhhhhcCccCccch---------h-
Confidence 57889999999999999999999999999987 77799999999988766543322110 0
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
.... ....++.-....+++.++.+|.++++.+...+.+++.|||+ +|+++|+||.
T Consensus 297 ~l~~--------------------~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~-----~~~l~GvvSL 351 (381)
T KOG1764|consen 297 CLSE--------------------ALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE-----DGVLVGVISL 351 (381)
T ss_pred HHHH--------------------HhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcC-----CCcEEEEeeH
Confidence 0000 01111121233589999999999999999999999999997 5789999999
Q ss_pred HHHHHHHHhhhcCc
Q 013262 424 QDLRAFNILTAFPH 437 (447)
Q Consensus 424 ~DLl~~~~~~~~~~ 437 (447)
.|++.+...+....
T Consensus 352 sDil~~l~~~p~~~ 365 (381)
T KOG1764|consen 352 SDILSYLVLTPSGG 365 (381)
T ss_pred HHHHHHHHhCccCC
Confidence 99999988765433
No 120
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=98.64 E-value=8.9e-08 Score=98.88 Aligned_cols=100 Identities=19% Similarity=0.187 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc------------CCcchHHHHHHHHHHHHHhhhchhHH
Q 013262 126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY------------TNIDQGLYAVLGAASLMAGSMRMTVS 193 (447)
Q Consensus 126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~------------~~~~~~~~a~~G~aa~~~g~~~~p~s 193 (447)
++.|++.+.+++|+|.|.|...|+..+||++|..+++..+.. ...+...+..+|+||.++++.++|++
T Consensus 88 ~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APia 167 (416)
T cd01036 88 LIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIG 167 (416)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcce
Confidence 458999999999999999999999999999999999976531 12345678999999999999999999
Q ss_pred HHHHHHHhhcC-C--chHHHHHHHHHHHHHHHhhc
Q 013262 194 LCVIFLELTNN-L--LLLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 194 ~~vi~~E~t~~-~--~~~~p~~ia~~va~~v~~~l 225 (447)
++++.+|.+.. + ..+.|.++++++|..+.+.+
T Consensus 168 GvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 168 GLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred eeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998754 2 36789999999999888766
No 121
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=98.63 E-value=5.1e-08 Score=101.96 Aligned_cols=122 Identities=15% Similarity=0.126 Sum_probs=89.5
Q ss_pred CChHHHHHHHhcCCC-CCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhh-----------c
Q 013262 99 TTNDDAVRNIFSSNT-PTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMG-----------S 166 (447)
Q Consensus 99 ~~~~~~i~~l~~~~~-~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~-----------~ 166 (447)
++|-..++..+++.. ...+++. .++.|++.+.+++|+|.|.|.+.|+..+||++|..+++... .
T Consensus 105 GsGip~v~~~l~g~~~~~~l~~r----~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~ 180 (466)
T cd03685 105 GSGIPEVKGYLNGVKIPHILRLK----TLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRY 180 (466)
T ss_pred CCCHHHHHHHHcCcCccccchHH----HHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhh
Confidence 456666777766422 1112233 34589999999999999999999999999999999997431 1
Q ss_pred c-CCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhcC---CchHHHHHHHHHHHHHHHhh
Q 013262 167 Y-TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNN---LLLLPITMIVLLIAKTVGDS 224 (447)
Q Consensus 167 ~-~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~---~~~~~p~~ia~~va~~v~~~ 224 (447)
. ...+-..+..+||||.++++.++|++++++.+|.++. .....+.++++++|..+++.
T Consensus 181 ~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~ 242 (466)
T cd03685 181 FRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNF 242 (466)
T ss_pred ccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 1 1234456899999999999999999999999998763 23555666666666666554
No 122
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.59 E-value=3.6e-07 Score=93.62 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhcCC
Q 013262 126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNL 205 (447)
Q Consensus 126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~ 205 (447)
.+.|++.+.+|+|+|.|.|...|+..+||++|..+++.++.....+-.....+|+||.++++.++|++++++.+|.....
T Consensus 80 ~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~~~~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~ 159 (390)
T cd01034 80 AVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWGGLSERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRD 159 (390)
T ss_pred HHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhh
Confidence 44899999999999999999999999999999999998875323455678999999999999999999999999976542
Q ss_pred ---chHHHHHHHHHHHHHHHhhc
Q 013262 206 ---LLLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 206 ---~~~~p~~ia~~va~~v~~~l 225 (447)
....|++++++++.+++..+
T Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~~ 182 (390)
T cd01034 160 FELRFSGLVLLAVIAAGLVSLAV 182 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888888877654
No 123
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.59 E-value=2.1e-07 Score=95.19 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhc-CC-
Q 013262 128 LYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-NL- 205 (447)
Q Consensus 128 ~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~-~~- 205 (447)
.|++++.+|+|+|.+.|...|+..+||++|..+++.++.. ..+...+..+|+||.++++.++|++++++.+|... ++
T Consensus 87 ~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~~-~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~ 165 (388)
T cd01033 87 IHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGLT-VADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTIS 165 (388)
T ss_pred HHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999999999999988642 23445788999999999999999999999999753 33
Q ss_pred -chHHHHHHHHHHHHHHHhhc
Q 013262 206 -LLLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 206 -~~~~p~~ia~~va~~v~~~l 225 (447)
..+.|.++++++|+.+++.+
T Consensus 166 ~~~~~~~~~as~~a~~v~~~~ 186 (388)
T cd01033 166 LRSVVAALATSAIAAAVASLL 186 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 36889999999999988876
No 124
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.54 E-value=2.3e-07 Score=91.53 Aligned_cols=119 Identities=18% Similarity=0.338 Sum_probs=95.9
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
+++++.|+.++.++++.-..+++.++||.++. .-..+|+|+|+.+|+..+ +.
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g--------~~~~KLvG~vtsrdi~f~-~~------------------- 168 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDG--------KRGSKLVGIITSRDIQFL-ED------------------- 168 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCC--------cccceeEEEEehhhhhhh-hc-------------------
Confidence 44678999999999999999999999999765 233789999999998442 11
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....++++|.+.+++.+...+++++-+++++.....+||||+ +++++-+|+|
T Consensus 169 -----------------------~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-----~gelva~~~r 220 (503)
T KOG2550|consen 169 -----------------------NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD-----KGELVAMLSR 220 (503)
T ss_pred -----------------------ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc-----CCceeeeeeh
Confidence 113356778888899999999999999999999999999998 5679999999
Q ss_pred HHHHHHHHhhhcCccccc
Q 013262 424 QDLRAFNILTAFPHLERS 441 (447)
Q Consensus 424 ~DLl~~~~~~~~~~~~~~ 441 (447)
.||.+. +-++..+++
T Consensus 221 tDl~k~---~~yPlask~ 235 (503)
T KOG2550|consen 221 TDLMKN---RDYPLASKD 235 (503)
T ss_pred hhhhhh---cCCCccccC
Confidence 999874 334444443
No 125
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.51 E-value=1.5e-06 Score=87.93 Aligned_cols=109 Identities=21% Similarity=0.225 Sum_probs=87.3
Q ss_pred eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcch
Q 013262 265 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFS 344 (447)
Q Consensus 265 vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
.....++.+..++++.+...+.+...|+|++ +++.|.|+.+++...+....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~------------------ 302 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQ-----------NKLVGVVDVESIKQARKKAQ------------------ 302 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCC-----------CCEEEEEeHHHHHHHhhcCC------------------
Confidence 3445667788999999998888888899987 89999999998865433210
Q ss_pred HHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHH
Q 013262 345 WVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 424 (447)
Q Consensus 345 ~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~ 424 (447)
.+.+.+.....++++++++.+++..|.+.+.. +||+|+ +|+++|+||+.
T Consensus 303 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-----~~~~~g~i~~~ 351 (363)
T TIGR01186 303 -------------------------GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-----DQRLVGIVTRG 351 (363)
T ss_pred -------------------------chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-----CCcEEEEEEHH
Confidence 12223446667899999999999999999998 999997 67899999999
Q ss_pred HHHHHHHhh
Q 013262 425 DLRAFNILT 433 (447)
Q Consensus 425 DLl~~~~~~ 433 (447)
+++++..+.
T Consensus 352 ~~~~~~~~~ 360 (363)
T TIGR01186 352 SLVDALYDS 360 (363)
T ss_pred HHHHHHHhh
Confidence 999987654
No 126
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=98.48 E-value=7.2e-07 Score=92.88 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc--CCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhh-
Q 013262 126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY--TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT- 202 (447)
Q Consensus 126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~--~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t- 202 (447)
++.|++.+.+++|+|.|.|...|+..+||++|..++++++.. ...+-..+..+|+||.++++.++|++++++.+|..
T Consensus 79 ~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~ 158 (445)
T cd03684 79 LLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVS 158 (445)
T ss_pred HHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhh
Confidence 448999999999999999999999999999999999987532 23445678899999999999999999999999954
Q ss_pred cCCc--hHHHHHHHHHHHHHHHhhc
Q 013262 203 NNLL--LLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 203 ~~~~--~~~p~~ia~~va~~v~~~l 225 (447)
..++ .+.|.++++++|..+.+.+
T Consensus 159 ~~~~~~~l~~~~~as~~a~~v~~~~ 183 (445)
T cd03684 159 YYFPLKTLWRSFFCALVAAFTLKSL 183 (445)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHh
Confidence 4443 6788999999999888754
No 127
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=1.6e-06 Score=88.78 Aligned_cols=121 Identities=16% Similarity=0.149 Sum_probs=92.5
Q ss_pred ccccccccCCCC-eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262 253 LTVGELIDAKPP-VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 331 (447)
Q Consensus 253 l~v~diM~~~~~-vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~ 331 (447)
+++.++|.+... .+...+..+..++++.|...+.+...|+|++ ++++|+|+.+++.......
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~------ 336 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-----------NKFVGAVSIDSLKTALTQQ------ 336 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-----------CcEEEEEeHHHHHhhhhcC------
Confidence 567788854111 1223456688999999999999999999987 8999999999996533210
Q ss_pred ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262 332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 411 (447)
Q Consensus 332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~ 411 (447)
..+.+.+.....++.+++++.+++..+.+.... +||||+
T Consensus 337 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--- 375 (400)
T PRK10070 337 -------------------------------------QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE--- 375 (400)
T ss_pred -------------------------------------CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---
Confidence 012223445667899999999999999997776 999997
Q ss_pred CCCCcEEEEEeHHHHHHHHHhh
Q 013262 412 AGVSPVVGILTRQDLRAFNILT 433 (447)
Q Consensus 412 ~g~~~lvGIITr~DLl~~~~~~ 433 (447)
+++++|+||+.+++++....
T Consensus 376 --~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 376 --DQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred --CCcEEEEEEHHHHHHHHHhc
Confidence 67899999999999987654
No 128
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.33 E-value=5.9e-07 Score=85.35 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=52.1
Q ss_pred cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262 369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 430 (447)
Q Consensus 369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~ 430 (447)
++-.++|.++.+++++++++++|.+++.+++++.+||+|+ +.+++||||+.|+++..
T Consensus 245 LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-----~~rl~GiVt~~dl~~~a 301 (382)
T COG3448 245 LTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE-----HRRLVGIVTQRDLLKHA 301 (382)
T ss_pred ccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc-----ccceeeeeeHHHHhhcc
Confidence 4556789999999999999999999999999999999998 67899999999999843
No 129
>PRK03655 putative ion channel protein; Provisional
Probab=98.31 E-value=5.3e-06 Score=85.47 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHh-hcC
Q 013262 126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLEL-TNN 204 (447)
Q Consensus 126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~-t~~ 204 (447)
...|++++.+++++|.+.|...|+..+||++|..+|+.+.. ..+.....++|+||-++++.++|++++++.+|. .++
T Consensus 100 ~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~~--~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~ 177 (414)
T PRK03655 100 LPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLP--RVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGS 177 (414)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999987732 134445778999999999999999999999995 565
Q ss_pred Cc------hHHHHHHHHHHHHHHHhhc
Q 013262 205 LL------LLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 205 ~~------~~~p~~ia~~va~~v~~~l 225 (447)
+. .++|+ +++.++..+...+
T Consensus 178 ~~~~~~~~~~~~v-~aa~~a~~v~~~~ 203 (414)
T PRK03655 178 NEVPLWDRLFAPL-MAAAAGALTTGLF 203 (414)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 54 35554 3444566665544
No 130
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=98.30 E-value=6.2e-07 Score=92.91 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc-----CCcchHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 013262 126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-----TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLE 200 (447)
Q Consensus 126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~-----~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E 200 (447)
++.|++.+.+++|+|.|.|...|+..+||++|..+++..+.. ...+-..+..+|+||.++++.++|++++++.+|
T Consensus 96 ~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE 175 (426)
T cd03683 96 LVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIE 175 (426)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEee
Confidence 448999999999999999999999999999999999987531 112223588999999999999999999999999
Q ss_pred hhcC-C--chHHHHHHHHHHHHHHHhh
Q 013262 201 LTNN-L--LLLPITMIVLLIAKTVGDS 224 (447)
Q Consensus 201 ~t~~-~--~~~~p~~ia~~va~~v~~~ 224 (447)
.... + ..+.|.++++++|..+.+.
T Consensus 176 ~l~~~~~~~~~~~~~i~s~~a~~v~~~ 202 (426)
T cd03683 176 VTSTYFAVRNYWRGFFAATCGAFTFRL 202 (426)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 7543 3 3667888888888877664
No 131
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.20 E-value=3.4e-06 Score=70.76 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=50.2
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 319 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~ 319 (447)
.+++|+|.+ ++.++++++++.++++.|.+.++..+||+|++ ++++|+|+.+||.
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-----------~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDD-----------GTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHhh
Confidence 779999998 88899999999999999999999999999987 8999999999985
No 132
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.12 E-value=1.2e-06 Score=91.50 Aligned_cols=113 Identities=11% Similarity=0.212 Sum_probs=89.1
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 332 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~ 332 (447)
.+++++|++ ++.++++++++.++.+.|+++++..+||||++ |+++|+|+.+|+.+.+.+..
T Consensus 195 ~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-----------g~lvGiIt~~Dil~~l~~~~------ 255 (449)
T TIGR00400 195 EILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-----------GRLVGIVTVDDIIDVIQSEA------ 255 (449)
T ss_pred CcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-----------CeEEEEEEHHHHHHHHHhhh------
Confidence 468999998 88899999999999999999999999999987 89999999999988765421
Q ss_pred cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262 333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 412 (447)
Q Consensus 333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~ 412 (447)
.+| +|....++..+++.+..+...+.+.++.+++|.-
T Consensus 256 ------------~ed--------------------------~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~----- 292 (449)
T TIGR00400 256 ------------TED--------------------------FYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVLL----- 292 (449)
T ss_pred ------------HHH--------------------------HHHhcCCCCCcchhhhchHHHHHHhccchHHHHH-----
Confidence 012 2223333444567888989999999999998862
Q ss_pred CCCcEEEEEeHHHHHHHHHh
Q 013262 413 GVSPVVGILTRQDLRAFNIL 432 (447)
Q Consensus 413 g~~~lvGIITr~DLl~~~~~ 432 (447)
+.|++| ..++..+.+
T Consensus 293 ----~~~~~t-~~ii~~f~~ 307 (449)
T TIGR00400 293 ----VSSTFT-ATIISNYED 307 (449)
T ss_pred ----HHHHHH-HHHHHHHHH
Confidence 788888 777776554
No 133
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.05 E-value=9.6e-07 Score=94.53 Aligned_cols=160 Identities=17% Similarity=0.270 Sum_probs=104.7
Q ss_pred HhhCCCCCCCCCC------ccccccccccccc-CCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCc
Q 013262 235 ELKGLPFLDAHPE------PWMRTLTVGELID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVAT 307 (447)
Q Consensus 235 ~~kg~p~l~~~~~------~~l~~l~v~diM~-~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~ 307 (447)
+.+|+|.+..+.. ......+|+++|+ + +++++++++++.++.+.|.+++++.+||||++ |
T Consensus 222 ~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-----------g 288 (546)
T PRK14869 222 KENGVTVISTPYDTFTTARLINQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-----------G 288 (546)
T ss_pred HhCCCeEEEecccHHHHHHHhhcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-----------C
Confidence 4567776543321 1234678999999 7 89999999999999999999999999999987 8
Q ss_pred eEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCcee---cC
Q 013262 308 ELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV---IE 384 (447)
Q Consensus 308 ~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV---~~ 384 (447)
+++|+|+++|+.....++...-+.. +.. .....+.+ ..+ ..+. + +-.+..++...|+.+ +.
T Consensus 289 ~lvGiit~~dl~~~~~~~~iLVD~~-----e~~--q~~~~~~~--~~i--~~ii----D-HH~~~~~~~~~pi~~~~~~~ 352 (546)
T PRK14869 289 KVVGVISRYHLLSPVRKKVILVDHN-----EKS--QAVEGIEE--AEI--LEII----D-HHRLGDIQTSNPIFFRNEPV 352 (546)
T ss_pred CEEEEEEHHHhhccccCceEEEcCc-----ccc--ccccchhh--ceE--EEEe----c-CCccCCCCCCCCcEEEeeee
Confidence 9999999999987543322111000 000 00000000 000 0000 0 112445666677655 34
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262 385 SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 429 (447)
Q Consensus 385 ~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~ 429 (447)
.++...+.++|++.+....|++.. ..+.||+|..+.+++
T Consensus 353 gst~tiv~~~~~~~~i~~~~~ia~------~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 353 GSTSTIVARMYRENGIEPSPEIAG------LLLAAILSDTLLFKS 391 (546)
T ss_pred eeHHHHHHHHHHHcCCCCCHHHHH------HHHHHHHHHhcCccC
Confidence 667788999999999998888864 458999998887754
No 134
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.01 E-value=9.9e-06 Score=67.91 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=49.3
Q ss_pred cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHH
Q 013262 369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 428 (447)
Q Consensus 369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~ 428 (447)
..++++|.+.+.++++++++.++++.|.+.+.+.+||+|+ +++++|+||++|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-----~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-----DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHhhc
Confidence 3467788888999999999999999999999999999987 568999999999864
No 135
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.91 E-value=2.1e-05 Score=65.17 Aligned_cols=55 Identities=27% Similarity=0.338 Sum_probs=50.2
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
.+++++|.. ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++
T Consensus 56 ~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-----------~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-----------GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CeEEEEEEhHHhhc
Confidence 468899988 78899999999999999999999999999987 89999999999864
No 136
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.87 E-value=1.7e-05 Score=69.01 Aligned_cols=61 Identities=21% Similarity=0.301 Sum_probs=55.1
Q ss_pred ccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhh
Q 013262 368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 434 (447)
Q Consensus 368 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~ 434 (447)
.+..+.+|+++.+.+.|++++.++.++|++.|+.++||+++ ++++|-||..|+.+...+..
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE------DKVVGSITENDIVRALLEGM 124 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC------CeeeeeecHHHHHHHHhccc
Confidence 44567799999999999999999999999999999999985 68999999999999887664
No 137
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.85 E-value=2.6e-05 Score=73.13 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=54.9
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 323 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~ 323 (447)
+.+|+|+|++ +++++++++.+.|++++|..++...+-|+|++ |+.+|+|||.|++..+.
T Consensus 233 ~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~-----------gkpvGiITrTDIL~~ia 291 (294)
T COG2524 233 DAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSN-----------GKPVGIITRTDILTRIA 291 (294)
T ss_pred cccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccC-----------CcEEEEEehHHHHHHhh
Confidence 5789999999 99999999999999999999999999999987 99999999999987553
No 138
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.84 E-value=2.8e-05 Score=64.70 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=50.7
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+.+
T Consensus 58 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-----------ARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-----------CcEEEEEEhHhhcc
Confidence 3568899988 88899999999999999999999999999986 89999999999853
No 139
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.72 E-value=9.9e-05 Score=61.91 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=43.8
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~ 431 (447)
++.++++++++.++.++|.+.+.+.+||+|+ +++++|++|++|+++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-----~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-----NGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEeHHHHHHHHh
Confidence 4568899999999999999999999999986 567999999999997654
No 140
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.67 E-value=0.0001 Score=60.04 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=42.3
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262 379 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 430 (447)
Q Consensus 379 p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~ 430 (447)
++++++++++.++.++|.+.+.+.+||+|+ + +++++|+||++|+.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~-~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDS---R-KQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeC---C-CCEEEEEEEHHHHhhhe
Confidence 468999999999999999999999999986 2 26799999999998754
No 141
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.62 E-value=0.00011 Score=60.77 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=49.1
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 319 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~ 319 (447)
.+++++|.+ ++.++++++++.++++.|.+++.+.+||++++ ++++|+|+++|++
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEE-----------GRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-----------CCEEEEEEhHHhc
Confidence 457899988 88899999999999999999999999999976 8899999999985
No 142
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.62 E-value=0.00018 Score=49.02 Aligned_cols=46 Identities=35% Similarity=0.499 Sum_probs=41.0
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262 379 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 429 (447)
Q Consensus 379 p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~ 429 (447)
+.++.+++++.++.+.|.+.+.+++||+++ +++++|+++++|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-----EGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-----CCeEEEEEEHHHHHHh
Confidence 457889999999999999999999999986 4679999999999764
No 143
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.61 E-value=9.6e-05 Score=62.10 Aligned_cols=56 Identities=29% Similarity=0.573 Sum_probs=50.7
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..+++++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+++|+..
T Consensus 68 ~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------g~~~Gvit~~di~~ 123 (124)
T cd04600 68 PETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDED-----------RRLVGIVTQTDLIA 123 (124)
T ss_pred cccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-----------CCEEEEEEhHHhhc
Confidence 4578899988 88999999999999999999999999999976 89999999999864
No 144
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.58 E-value=0.00023 Score=61.62 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=44.8
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 432 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~ 432 (447)
++.++.+++++.+|.+.|.+.+...+||+|+ +++++|+||.+|++++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-----~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-----DDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHHHHHHhh
Confidence 4578999999999999999999999999997 5789999999999987654
No 145
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.57 E-value=0.00013 Score=60.39 Aligned_cols=55 Identities=27% Similarity=0.521 Sum_probs=48.6
Q ss_pred ccccccccCCCCeeEecCC--CCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGI--EKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~--~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
.++.++|.+ ++.+++++ +++.++++.|.+++...+||+|++ ++++|+|+++|+++
T Consensus 58 ~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-----------~~~~Gvit~~dl~~ 114 (115)
T cd04620 58 LPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-----------GQLIGLVTAESIRQ 114 (115)
T ss_pred cCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-----------CCEEEEEEhHHhhc
Confidence 567889987 78888876 689999999999999999999987 89999999999864
No 146
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.56 E-value=0.00014 Score=59.79 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=50.5
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 321 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~ 321 (447)
+.+++++|.+ ++..+++++++.++++.+.+.+...+||++++ ++++|+|+++|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEE-----------GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-----------CcEEEEEEhHHhhhh
Confidence 3468889987 88899999999999999999998999999976 899999999999753
No 147
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.53 E-value=0.00026 Score=57.21 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=42.3
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 429 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~ 429 (447)
+++++.+++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-----DGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEEHHHHhcC
Confidence 5678999999999999999999999999987 5689999999999863
No 148
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.52 E-value=0.00019 Score=59.77 Aligned_cols=57 Identities=23% Similarity=0.416 Sum_probs=51.2
Q ss_pred ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
...++.++|.+ ++.++++++++.++++.|.+.+.+.+||++++ ++++|+|++.|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQ-----------GRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-----------CcEEEEEEHHHhhh
Confidence 34678899988 88999999999999999999999999999876 89999999999864
No 149
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.52 E-value=0.00021 Score=60.23 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=46.6
Q ss_pred ccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262 255 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 319 (447)
Q Consensus 255 v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~ 319 (447)
+.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQ-----------GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCC-----------CcEEEEEeHHHhh
Confidence 3457777 88899999999999999999999999999986 8899999999984
No 150
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.51 E-value=0.0003 Score=74.22 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=51.7
Q ss_pred cccccccc-CCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262 253 LTVGELID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 322 (447)
Q Consensus 253 l~v~diM~-~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L 322 (447)
.+++++|. + +++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++||++.+
T Consensus 147 ~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-----------g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 147 QPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-----------GRLKGLITVKDIEKAE 204 (486)
T ss_pred CcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEEhHHhhhhh
Confidence 46889998 5 78899999999999999999999999999987 8999999999998754
No 151
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.51 E-value=0.00019 Score=58.84 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=50.1
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
+.+++++|.+ ++.++++++++.++.+.|.+.+.+.+||++++ ++++|+|+++|+.+
T Consensus 52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-----------KKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-----------CCEEEEEEHHHhhc
Confidence 3468899988 88899999999999999999999999999976 89999999999853
No 152
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.50 E-value=0.00022 Score=58.75 Aligned_cols=55 Identities=22% Similarity=0.477 Sum_probs=49.5
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 319 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~ 319 (447)
..++.++|.+ ++.++++++++.++++.+.+++.+.+||++++ ++++|+|++.|+.
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----------g~~~Gvvt~~dl~ 111 (113)
T cd04615 57 DAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDK-----------GKVGGIVTEDDIL 111 (113)
T ss_pred CCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCC-----------CeEEEEEEHHHhh
Confidence 4568899988 88899999999999999999998899999886 8999999999985
No 153
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.47 E-value=0.0005 Score=58.39 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=45.2
Q ss_pred CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262 377 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 432 (447)
Q Consensus 377 ~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~ 432 (447)
+++.++++++++.++.+.|++.+.+++||+|+ +++++|+||.+|+++....
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-----~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE-----SGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHHH
Confidence 46778999999999999999999999999987 5679999999999976554
No 154
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.46 E-value=0.00026 Score=58.25 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=48.6
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
.+++++|.+ ++.++++++++.++++.|.+++...+||+++ ++++|+|+++|+..
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------------~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLDG------------GTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------------CEEEEEEEHHHhhc
Confidence 568899988 7889999999999999999999999999984 79999999999864
No 155
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.46 E-value=0.00026 Score=58.28 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=49.6
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
.++.++|.+ +..++++++++.++++.+..++.+.+||++++ ++++|+|+..||++
T Consensus 59 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDN-----------GRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CCEEEEEEHHHhhc
Confidence 468899988 78899999999999999999888999999876 89999999999864
No 156
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.45 E-value=0.00022 Score=59.12 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=49.3
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..+++++|.+ ++.++++++++.++++.|.+.+...+||+|+ ++++|+|+++|+..
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------------~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN------------NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------------CEEEEEEEHHHhhc
Confidence 3568899988 8899999999999999999999999999986 68999999999864
No 157
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.45 E-value=0.00027 Score=57.61 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=49.2
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..++++|.+ ++.++++++++.++++.+.+++.+.+||++++ |+++|+|+.+++++
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-----------NNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-----------CeEEEEEEHHHhhc
Confidence 457889987 78899999999999999999998999999987 89999999999853
No 158
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.43 E-value=0.00019 Score=59.16 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=49.5
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
.++.++|.+ +..++++++++.++++.+.+++.+.+||++++ ++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-----------~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-----------GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-----------CCEEEEEEHHHhcc
Confidence 568899988 88899999999999999999998999999986 78999999999853
No 159
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.41 E-value=0.00024 Score=59.40 Aligned_cols=57 Identities=19% Similarity=0.416 Sum_probs=50.6
Q ss_pred ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
...++.++|.+ ++.++++++++.++++.|.+.+.+.+||++++ ++++|+++++|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----------g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-----------DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-----------CcEEEEEEhHHhhc
Confidence 34568889987 88899999999999999999999999999986 89999999999864
No 160
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.41 E-value=0.00033 Score=57.37 Aligned_cols=56 Identities=23% Similarity=0.428 Sum_probs=49.9
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..+++++|.+ ++.++++++++.++++.+.+.+...+||+|++ ++++|+|+++|+.+
T Consensus 55 ~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDD-----------GELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCC-----------CcEEEEEEhHHhhc
Confidence 4668899988 88899999999999999998888889999986 88999999999853
No 161
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00036 Score=58.35 Aligned_cols=57 Identities=21% Similarity=0.430 Sum_probs=50.9
Q ss_pred ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
...++.++|.+ ++..+++++++.++++.|.+.+.+.+||++++ ++++|+|++.|+..
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-----------GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CCEEEEEEHHHhhc
Confidence 45678899988 88899999999999999999898999999986 78999999999864
No 162
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.38 E-value=0.00035 Score=57.04 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=49.1
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
.+++++|.+ ++.++++++++.++.+.+.+.+.+.+||++++ ++++|+|+++|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-----------GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCC-----------CeEEEEEehHHhhc
Confidence 457888987 88899999999999999999899999999986 89999999999853
No 163
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.38 E-value=0.00031 Score=57.73 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=49.1
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..+.++|.. ++.++++++++.++.+.|.+++.+.+||++++ ++++|+|+++|+..
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-----------GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-----------CCEEEEEEHHHhhc
Confidence 357888987 88899999999999999999999999999886 78999999999853
No 164
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.38 E-value=0.00033 Score=73.82 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=53.1
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 321 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~ 321 (447)
+.+++++|++.++++++++++++.+++++|.+++.+.+||||++ ++++|+|+++|+++.
T Consensus 160 ~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-----------g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 160 DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-----------GNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEhHHHHhc
Confidence 46799999864478899999999999999999999999999987 899999999999874
No 165
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.37 E-value=0.00042 Score=56.35 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=48.1
Q ss_pred cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
+++++|.+ +...+++++++.++++.|.+.+.+.+||+|++ ++++|+|+++++.+
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED-----------GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCC-----------CcEEEEEEHHHhhc
Confidence 47788887 77789999999999999999999999999986 88999999999853
No 166
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.37 E-value=0.00035 Score=57.94 Aligned_cols=55 Identities=16% Similarity=0.345 Sum_probs=47.1
Q ss_pred ccccccccCCCCeeEecC--CCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 253 LTVGELIDAKPPVITLSG--IEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~--~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..++++|.+ +...+.. ++++.++++.|.+++...+||++++ ++++|+|+++|+..
T Consensus 57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-----------~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDD-----------GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-----------CeEEEEEEHHHhhc
Confidence 347789987 6666655 9999999999999999999999876 89999999999853
No 167
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.36 E-value=0.00043 Score=59.79 Aligned_cols=55 Identities=20% Similarity=0.447 Sum_probs=49.6
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..+++++|.+ ++..+.+++++.++++.|.+.+++.+||+++ ++++|+|+++|+.+
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------------~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN------------DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------------CEEEEEEEHHHHhh
Confidence 4578999988 8889999999999999999999999999986 68999999999864
No 168
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.36 E-value=0.00055 Score=46.48 Aligned_cols=47 Identities=30% Similarity=0.509 Sum_probs=41.2
Q ss_pred eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262 265 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 322 (447)
Q Consensus 265 vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L 322 (447)
+.++++++++.++.+.+.+.+++.+||++++ ++++|+++..++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-----------GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-----------CeEEEEEEHHHHHHhh
Confidence 4578899999999999999999999999986 7899999999997643
No 169
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.35 E-value=0.00073 Score=55.33 Aligned_cols=50 Identities=28% Similarity=0.316 Sum_probs=44.2
Q ss_pred CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262 377 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 377 ~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~ 431 (447)
+++.++.+++++.++++.|.+.+...+||+|+ .++++|+||.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-----DGRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-----CCcEEEEEeHHHHHHHHh
Confidence 46678999999999999999999999999987 578999999999987543
No 170
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.35 E-value=0.00072 Score=55.56 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=43.8
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 432 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~ 432 (447)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+++...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----~~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-----DERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEeeHHHHHHHHhc
Confidence 4568899999999999999999999999986 4789999999999876543
No 171
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.35 E-value=0.00038 Score=57.24 Aligned_cols=56 Identities=14% Similarity=0.389 Sum_probs=50.4
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecC-CCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE-GVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~-~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..++.++|.+ ++.++++++++.++++.|.+.+.+.+||+++ + ++++|+++.+|+..
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-----------~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDP-----------GKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCC-----------CEEEEEEEhHHhhc
Confidence 3678899988 8899999999999999999999999999987 5 79999999999853
No 172
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.34 E-value=0.00033 Score=57.67 Aligned_cols=55 Identities=24% Similarity=0.445 Sum_probs=49.3
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
.+++++|.+ ++.++++++++.++++.+.+.+.+.+||++++ ++++|+|++.|+.+
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-----------GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCC-----------CcEEEEEEHHHhhc
Confidence 358899988 88899999999999999999999999999876 79999999999854
No 173
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.34 E-value=0.00032 Score=69.89 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=52.7
Q ss_pred ccCccccccCC--CceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262 368 YIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 368 ~idl~~im~~~--p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~ 431 (447)
.++++++|+++ +.++++++++.++.+.|.+.+...+||+|+ +|+++|+||.+|+.+...
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-----~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-----QQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEecHHHHHHHHh
Confidence 35788999998 999999999999999999999999999997 578999999999987543
No 174
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00034 Score=58.77 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=50.1
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..++.++|.+ ++.++++++++.++++.+.+.+.+.+||++++ ++++|+|+++|+.+
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-----------~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDD-----------GKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----------CcEEEEEEHHHhhc
Confidence 3568889987 88999999999999999999999999999876 78999999999864
No 175
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.33 E-value=0.00029 Score=58.29 Aligned_cols=58 Identities=19% Similarity=0.365 Sum_probs=48.7
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..++.++|.+..++.++.+++++.++++.|.+++.+.+||++++ ++++|+++.+|+.+
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~-----------~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDS-----------GQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCC-----------CcEEEEEeccceec
Confidence 34678888752246689999999999999999999999999986 79999999998853
No 176
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.33 E-value=0.00046 Score=56.78 Aligned_cols=54 Identities=24% Similarity=0.537 Sum_probs=48.3
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 319 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~ 319 (447)
..++.++|.+ ++..+++++++.++++.+.+.+.+.+||+++ ++++|+|+++|+.
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvi~~~di~ 110 (112)
T cd04802 57 EVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDD------------DELVGIVTTTDIV 110 (112)
T ss_pred cCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC------------CEEEEEEEhhhhh
Confidence 4568899987 8889999999999999999999999999986 4899999999985
No 177
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.33 E-value=0.00047 Score=56.55 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=48.8
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 319 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~ 319 (447)
..+++++|.+ ++.++++++++.++++.|.+.+.+.+||++ + ++++|+|++.|+.
T Consensus 55 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-----------~~~~Gvvt~~di~ 108 (110)
T cd04595 55 HAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-D-----------GRLVGIVTRTDLL 108 (110)
T ss_pred cCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-C-----------CEEEEEEEhHHhh
Confidence 4568899988 888999999999999999999999999998 5 7999999999985
No 178
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.32 E-value=0.00081 Score=55.12 Aligned_cols=50 Identities=26% Similarity=0.304 Sum_probs=43.7
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 432 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~ 432 (447)
++.++++++++.++.+.|.+.+..++||+|+ +++++|+++.+|+++...+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~Giv~~~~l~~~~~~ 51 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-----GGRLVGIFSERDIVRKVAL 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEehHHHHHHHhh
Confidence 4567899999999999999999999999987 4689999999999986543
No 179
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.32 E-value=0.00037 Score=69.66 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=51.1
Q ss_pred ccCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262 368 YIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 368 ~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~ 431 (447)
.+.++++|.+ ++.++++++++.++.++|.+.+.+.+||+|+ +|+++|+||.+|+.+...
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-----~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-----NMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-----CCcEEEEEecHHHHHHHh
Confidence 4567889987 8899999999999999999999888888886 578999999999987543
No 180
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.32 E-value=0.0007 Score=55.97 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=43.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~ 431 (447)
.++++++++++.++.+.|.+.+.+.+||+|+ +++++|+|+.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-----EGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-----CCcEEEEEeHHHHHHHhh
Confidence 3568899999999999999999999999986 568999999999987654
No 181
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.32 E-value=0.0003 Score=60.35 Aligned_cols=55 Identities=22% Similarity=0.462 Sum_probs=49.8
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..++.++|.+ ++..+++++++.++++.|.+.+.+.+||+| + |+++|+|+++|+.+
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-----------g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-----------GRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-C-----------CEEEEEEEhHhhhc
Confidence 4578899988 889999999999999999999999999999 6 89999999999854
No 182
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.32 E-value=0.00045 Score=56.60 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=48.5
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 319 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~ 319 (447)
.++.++|.+ ++.++++++++.++++.|.+.+.+.+||++++ ++++|+|+++|+.
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~i~~~dl~ 108 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-----------GRPVGIITRTDIL 108 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEEhHHhh
Confidence 457788887 88899999999999999999999999999886 7999999999985
No 183
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.30 E-value=0.00088 Score=55.93 Aligned_cols=49 Identities=33% Similarity=0.420 Sum_probs=44.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~ 431 (447)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-----~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-----DGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHH
Confidence 4568999999999999999999999999987 567999999999998765
No 184
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.30 E-value=0.00044 Score=56.51 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=47.5
Q ss_pred cccccccccCCCCeeEecC-CCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSG-IEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~-~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..++.++|.+ ++..+.+ ++++.++++.+.+.+++.+||++++ ++++|+|+++|++.
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDE-----------GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-----------CCEEEEEEhhhhhc
Confidence 3567889977 5566666 9999999999999999999999976 79999999999853
No 185
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.27 E-value=0.00098 Score=55.17 Aligned_cols=49 Identities=24% Similarity=0.194 Sum_probs=43.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~ 431 (447)
++.++.+++++.++.+.|.+.+...+||+|+ +++++|+++++|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-----DGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-----CCCEEEEEEHHHHHHHHh
Confidence 4568899999999999999999999999987 578999999999987654
No 186
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.26 E-value=0.001 Score=56.33 Aligned_cols=48 Identities=38% Similarity=0.491 Sum_probs=42.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 430 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~ 430 (447)
++.++.+++++.++.++|.+.+.+.+||+|+ +++++|+||++|+.+..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD-----NGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-----CCcEEEEEEHHHHHHHH
Confidence 3457899999999999999999999999987 57899999999998654
No 187
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.25 E-value=0.00057 Score=71.66 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=53.8
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 324 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~ 324 (447)
.+++|+|++ +++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++||++....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-----------g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDAD-----------GRLVGVLTRTGALRATIY 206 (479)
T ss_pred CCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHhhC
Confidence 458899998 99999999999999999999999999999987 899999999999886554
No 188
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.24 E-value=0.00066 Score=55.79 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=48.8
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..+++++|.+ ++..+++++++.++++.|.+++...+||+++ ++++|+|+.+|+.+
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG------------GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC------------CEEEEEEEhHHhhc
Confidence 3467889988 8889999999999999999999999999985 68999999999854
No 189
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.00047 Score=56.80 Aligned_cols=55 Identities=22% Similarity=0.434 Sum_probs=48.8
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..++.++|.+ ++.++++++++.++++.|.+++.+.+||+++ ++++|+|+.+|+.+
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD------------GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC------------CEEEEEEEHHHHhc
Confidence 3568899988 7889999999999999999998889999986 68999999999864
No 190
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.23 E-value=0.00056 Score=56.12 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=49.2
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..++.++|.. ++.++++++++.++++.|.+.+.+.+||+++ ++++|+|+.+|+.+
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD------------GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEHHHhhc
Confidence 3568899988 8889999999999999999999999999986 68999999999864
No 191
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.22 E-value=0.00067 Score=71.65 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=54.9
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 324 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~ 324 (447)
+.+++++|++..+++++++++++.++++.|.+++.+.+||||++ ++++|+|+++|+.+.+..
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-----------g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-----------GELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHhhC
Confidence 46789999973238899999999999999999999999999987 899999999999987754
No 192
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.22 E-value=0.00076 Score=57.06 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=45.9
Q ss_pred cccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 256 GELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 256 ~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
.+.|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+.+
T Consensus 74 ~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-----------~~~~Giit~~dil~ 125 (126)
T cd04642 74 DGVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEE-----------GKPIGVITLTDIIS 125 (126)
T ss_pred cccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-----------CCEEEEEEHHHHhc
Confidence 356666 78899999999999999999988999999986 89999999999864
No 193
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.21 E-value=0.00077 Score=55.16 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=49.4
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||++++ ++++|+|+..|+.+
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDS-----------GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC-----------CCEEEEEEHHHhhh
Confidence 467788988 88999999999999999999999999999876 89999999999853
No 194
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.20 E-value=0.00074 Score=55.81 Aligned_cols=52 Identities=21% Similarity=0.444 Sum_probs=48.2
Q ss_pred cccccccCCCCeeEecCCCCHHHHHHHHhc-CCCCeEEEecCCCCCCCCCCCCCc-eEEEEEeHHHH
Q 013262 254 TVGELIDAKPPVITLSGIEKVSQIVDVLRN-TTHNGFPVLDEGVVPPSGLANVAT-ELHGLILRAHL 318 (447)
Q Consensus 254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~-~~~~~fPVVd~~~~~~~~~~~~~~-~lvGiIt~~dL 318 (447)
+++++|.. +++++.++.++.++.+.|.+ .+++.+||++++ + +++|++++.|+
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~-----------~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDD-----------GGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC-----------CCeEEEEEEHHHc
Confidence 68899998 88999999999999999999 699999999986 5 99999999986
No 195
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.20 E-value=0.00062 Score=55.49 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=46.9
Q ss_pred cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
++.++|.+ +..++++++++.++++.|.+++.+.+||+++ ++++|+|+++|+..
T Consensus 51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------------~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------------GKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------------CEEEEEEEHHHhhc
Confidence 46678887 7889999999999999999999999999974 79999999999853
No 196
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.20 E-value=0.0006 Score=56.88 Aligned_cols=56 Identities=29% Similarity=0.587 Sum_probs=49.8
Q ss_pred ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
...++.++|.+ +..++++++++.++++.|.+.+.+.+||+++ ++++|+|+++|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD------------GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC------------CEEEEEEEHHHhhc
Confidence 45678899988 8889999999999999999999999999986 68999999999863
No 197
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.20 E-value=0.0007 Score=70.90 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=53.8
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 324 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~ 324 (447)
.+++++|++ +++++++++++.+++++|.+++.+.+||||++ ++++|+|+++||++....
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-----------g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-----------GTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHHhC
Confidence 468999998 89999999999999999999999999999987 899999999999886544
No 198
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.19 E-value=0.00077 Score=54.61 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=47.9
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 319 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~ 319 (447)
.++.++|.+ +..++++++++.++++.|.+++...+||+++ ++++|+|+.+++.
T Consensus 51 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE------------RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------------CEEEEEEEHHHhc
Confidence 357888988 8889999999999999999999999999986 7999999999985
No 199
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.19 E-value=0.00076 Score=70.60 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=53.3
Q ss_pred ccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262 368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 432 (447)
Q Consensus 368 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~ 432 (447)
.++++++|.+++.++.+++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+.+...+
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE-----AGKVLGSVTLRELLSALFA 393 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHhc
Confidence 45678899999999999999999999999999999999987 5689999999999986543
No 200
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.19 E-value=0.00084 Score=57.29 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=49.0
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
..++.++|.+ ++..+++++++.++.+.|.+.+.+.+||+++ ++++|+|+++|+++
T Consensus 77 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------------~~~iGvit~~dl~~ 131 (132)
T cd04636 77 GKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD------------GKLVGIISRGDIIR 131 (132)
T ss_pred CCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC------------CEEEEEEEHHHhhc
Confidence 3478899988 8889999999999999999999999999986 68999999999864
No 201
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.19 E-value=0.00071 Score=55.56 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=44.2
Q ss_pred cccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 258 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 258 iM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
+|.+ ++.++++++++.++.+.|.+++.+.+||+++ ++++|+|+++|+.+
T Consensus 56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------------~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------------GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEEC------------CeEEEEEEhhhhhc
Confidence 7877 8889999999999999999999999999954 79999999999864
No 202
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.00081 Score=55.24 Aligned_cols=53 Identities=17% Similarity=0.418 Sum_probs=47.9
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 319 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~ 319 (447)
.++.++|.+ ++.++++++++.++++.|.+++...+||+++ ++++|+|++.|+.
T Consensus 57 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~di~ 109 (111)
T cd04626 57 KKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD------------NKLIGVVRTKDIL 109 (111)
T ss_pred CcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEhHHhc
Confidence 467888988 8889999999999999999999999999986 6899999999985
No 203
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.0013 Score=55.72 Aligned_cols=46 Identities=30% Similarity=0.470 Sum_probs=41.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHH
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 428 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~ 428 (447)
++.++.+++++.++.+.|.+.+.+.+||+|+ +++++|+|+.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-----DDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-----CCcEEEEEEHHHHhh
Confidence 3568999999999999999999999999987 568999999999985
No 204
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.13 E-value=0.0009 Score=55.98 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=49.5
Q ss_pred ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
.+++++|.+ ++..+++++++.++++.+.+++.+.+||++++ ++++|++++.|++.
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-----------~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDEN-----------GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-----------CCEEEEEEHHHhhh
Confidence 468899988 88999999999999999999998999999886 79999999999864
No 205
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.11 E-value=0.0016 Score=53.39 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=44.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCC-CcEEEEEeHHHHHHHHHh
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNIL 432 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~-~~lvGIITr~DLl~~~~~ 432 (447)
+..++++++++.++.+.|.+.+...+||+++ + ++++|++|.+|+.+...+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~-----~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG-----DLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC-----CCceEEEEEEHHHHHHHHHc
Confidence 3568899999999999999999999999987 4 689999999999987654
No 206
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.10 E-value=0.001 Score=55.39 Aligned_cols=56 Identities=23% Similarity=0.427 Sum_probs=49.6
Q ss_pred ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
...++.++|.+ ++.++++++++.++++.+.+.+++.+||+++ ++++|+++.+|+.+
T Consensus 65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~------------~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED------------GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC------------CEEEEEEEHHHhhc
Confidence 34568899988 8899999999999999999999999999976 68999999999854
No 207
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.09 E-value=0.0022 Score=51.75 Aligned_cols=51 Identities=31% Similarity=0.287 Sum_probs=44.4
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 433 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~ 433 (447)
++.++++++++.++.+.|.+.+.+.+||+++ +++++|+++++|+++...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~G~v~~~~l~~~~~~~ 52 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-----DGRLVGIVTERDLLRALAEG 52 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC-----CCCEEEEEeHHHHHHHHHhc
Confidence 3567889999999999999999999999987 46899999999999876653
No 208
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.08 E-value=0.00086 Score=64.94 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=52.4
Q ss_pred ccCccccccCC-CceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262 368 YIDLHPLTNTT-PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 368 ~idl~~im~~~-p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~ 431 (447)
.+.++++|+++ +.++.+++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+.+...
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-----~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-----NNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-----CCCEEEEEEcHHHHHHHh
Confidence 45678899888 899999999999999999999999999997 578999999999987543
No 209
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.08 E-value=0.0044 Score=63.16 Aligned_cols=133 Identities=17% Similarity=0.218 Sum_probs=94.9
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 343 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 343 (447)
+.+.+.+..++-++...+.+.+++..||.|.+ .+.++.+++..-+++.+.......
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~----------~~~v~~ilt~~rIl~~l~~~~~~~-------------- 218 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPE----------TGEVLYILTQRRILKFLWLNGRLL-------------- 218 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeeccc----------ccceeeehhHHHHHHHHHHhhccc--------------
Confidence 44788888899888888999999999999943 268999999999888775421100
Q ss_pred hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262 344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423 (447)
Q Consensus 344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr 423 (447)
....++.. ++.+..+. +......+.+++++.+|+++|...++..+||||+ .++.+|++++
T Consensus 219 ~~~~~l~~--s~~dl~ig-------------~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-----~g~~v~~~s~ 278 (381)
T KOG1764|consen 219 PLPSLLSK--SLSDLGIG-------------TWSNIASISEDTPVIEALKIMSERRISALPVVDE-----NGKKVGNYSR 278 (381)
T ss_pred ccHHHhhC--CHHHhCcc-------------hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC-----CCceecceeh
Confidence 00011100 11111111 1124678899999999999999999999999998 5567999999
Q ss_pred HHHHHHHHhhhcCcccc
Q 013262 424 QDLRAFNILTAFPHLER 440 (447)
Q Consensus 424 ~DLl~~~~~~~~~~~~~ 440 (447)
.|+.......-+..+..
T Consensus 279 ~Dv~~l~~~~~~~~~~~ 295 (381)
T KOG1764|consen 279 FDVIHLAREGTYNNLDL 295 (381)
T ss_pred hhhhhhhhcCccCccch
Confidence 99998777665555443
No 210
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.06 E-value=0.0011 Score=64.88 Aligned_cols=61 Identities=20% Similarity=0.332 Sum_probs=56.0
Q ss_pred ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262 251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 324 (447)
Q Consensus 251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~ 324 (447)
.+.+...+|++ ++.++.+.++++.+.+.|--.+++-+||+|++ .+++|+|+|+|+++.|+.
T Consensus 247 ~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-----------~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 247 PSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSN-----------NTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCC-----------ceEEEEEEHHHHHHHHHH
Confidence 45667889999 99999999999999999999999999999998 899999999999998875
No 211
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.89 E-value=0.0015 Score=67.88 Aligned_cols=61 Identities=26% Similarity=0.380 Sum_probs=53.5
Q ss_pred CccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhhc
Q 013262 370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF 435 (447)
Q Consensus 370 dl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~~ 435 (447)
.+.+.+..+|++|++++|+.+|.+.|...|.+.+.|+++ +++..||||++|+.+....+-.
T Consensus 150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-----~~~~~GIvT~~dl~~~v~~~g~ 210 (610)
T COG2905 150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-----SGPLLGIVTRKDLRSRVIADGR 210 (610)
T ss_pred HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-----CCCccceeehHHHHHHHHhcCC
Confidence 456778899999999999999999999999999999987 5679999999999988775433
No 212
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.88 E-value=0.003 Score=51.40 Aligned_cols=49 Identities=29% Similarity=0.326 Sum_probs=42.7
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 432 (447)
Q Consensus 378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~ 432 (447)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|++|++|+.+...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------GRVVGSIDESDLLDALIE 50 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------CeeEEEEeHHHHHHHHhc
Confidence 3568899999999999999999999999984 579999999999986543
No 213
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.86 E-value=0.0026 Score=66.44 Aligned_cols=58 Identities=24% Similarity=0.364 Sum_probs=49.8
Q ss_pred ccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCC-CCcEEEEEeHHHHHH
Q 013262 368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG-VSPVVGILTRQDLRA 428 (447)
Q Consensus 368 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g-~~~lvGIITr~DLl~ 428 (447)
...+++.|.+++.++++++++.++.++|.+.+.+.+||+|+ +. .++++|+||++|+..
T Consensus 79 Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~---~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 79 VKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVED---GDMTGKLVGIITKRDIRF 137 (450)
T ss_pred hccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC---CCCCCeEEEEEEHHHHhh
Confidence 34566778889999999999999999999999999999987 10 058999999999975
No 214
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.83 E-value=0.0025 Score=52.88 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=46.6
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCC---eEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHN---GFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~---~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
+.+++++|.+ ++..+++++++.++++.|.+.+.. ..|||+++ ++++|+|+..|+.+
T Consensus 60 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------~~~~Gvvs~~di~~ 118 (119)
T cd04598 60 KKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE-----------GRYLGIGTVKDLLR 118 (119)
T ss_pred CCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-----------CeEEEEEEHHHHhc
Confidence 4568899988 888999999999999999877642 34688776 89999999999853
No 215
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.82 E-value=0.0018 Score=68.42 Aligned_cols=60 Identities=18% Similarity=0.336 Sum_probs=53.3
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 322 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L 322 (447)
+.+++|+|++..+++++++++++.++.++|.+++.+.+||||++ ++++|+|+++|+.+..
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-----------g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-----------GELVALVSRSDLKKNR 217 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-----------CcEEEEEEehHhhhcc
Confidence 45789999864478899999999999999999999999999987 8999999999998754
No 216
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.81 E-value=0.0023 Score=66.06 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=50.0
Q ss_pred CccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262 370 DLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 370 dl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~ 431 (447)
.++++|.+ ++++++.+++++++.+.+.+.+..++||+++ +.++++|+|+.+|++.+..
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~----~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE----TIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC----CCCceEEEEEHHHHHhHhc
Confidence 46778876 6789999999999999999999999999976 2357999999999997543
No 217
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.63 E-value=0.0042 Score=50.48 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=46.4
Q ss_pred cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
.+.++|.+ ++.++++++++.++.+.+.+.+.+.+||+++ ++++|+|+.+|+..
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------------~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------------GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEEHHHhhc
Confidence 45677877 7888999999999999999999999999985 68999999999853
No 218
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0038 Score=60.93 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=42.2
Q ss_pred CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262 377 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 432 (447)
Q Consensus 377 ~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~ 432 (447)
..+.++.+++++.+......+.+. .++|+|+ +++++|+|++..++.++.+
T Consensus 335 ~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-----~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 335 DDVLTVDADTPLSEILARIRQAPC-PVAVVDE-----DGRYVGIISRGELLEALAR 384 (386)
T ss_pred ccccccCccchHHHHHHHHhcCCC-ceeEEcC-----CCcEEEEecHHHHHHHHhc
Confidence 456688999999999998887776 5789988 6789999999999988754
No 219
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.60 E-value=0.0045 Score=53.73 Aligned_cols=54 Identities=19% Similarity=0.450 Sum_probs=48.5
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 319 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~ 319 (447)
..++.++|.+ ++.++++++++.++++.+.+.+...+||+++ ++++|+|+.+|++
T Consensus 88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------------~~~~Gvvt~~dl~ 141 (143)
T cd04634 88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED------------GRLVGIVTRGDII 141 (143)
T ss_pred cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEEHHHhh
Confidence 4567889988 8899999999999999999999999999986 6899999999985
No 220
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.56 E-value=0.0046 Score=60.91 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=50.2
Q ss_pred cCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262 369 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 430 (447)
Q Consensus 369 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~ 430 (447)
..++++|.+ ...++++++++.++.+.+.+.+..++||+++ + .++++|+|+.+|++...
T Consensus 67 ~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~---~-~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE---D-KDHIEGILMAKDLLPFM 126 (292)
T ss_pred CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC---C-CCcEEEEEEHHHHHhHh
Confidence 357888987 5789999999999999999999999999986 2 25799999999998654
No 221
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.55 E-value=0.0082 Score=61.32 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=41.4
Q ss_pred cCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262 376 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431 (447)
Q Consensus 376 ~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~ 431 (447)
.....++++++++.+++....+.+.. ++|+|+ |+++|+|++.++++++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~------~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN------GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC------CeEEEEEeHHHHHHHHh
Confidence 35667899999999999998887764 788874 67999999999998765
No 222
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.005 Score=63.84 Aligned_cols=60 Identities=15% Similarity=0.324 Sum_probs=55.6
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 324 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~ 324 (447)
+..++|+|.+ +++++.++++.+++.+++++++.-..||||++ ++++|+|+-+|+...++.
T Consensus 195 ~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-----------~~LiG~itiDDiidvi~e 254 (451)
T COG2239 195 DELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDED-----------NRLIGIITIDDIIDVIEE 254 (451)
T ss_pred HhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCC-----------CceeeeeeHHHHHHHHHH
Confidence 4568899999 88999999999999999999999999999998 899999999999998865
No 223
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.11 E-value=0.012 Score=59.67 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=50.2
Q ss_pred cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262 254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 324 (447)
Q Consensus 254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~ 324 (447)
.+++.|.+ ++.++++++++.+++..+.++++. +||+|++ ++++|+|++.+++..+..
T Consensus 303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----------~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDED-----------QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCC-----------CcEEEEEEHHHHHHHHHh
Confidence 35677777 778899999999999999999988 9999987 999999999999987754
No 224
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.40 E-value=0.0087 Score=62.87 Aligned_cols=97 Identities=23% Similarity=0.163 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhc-----------c-CCcchHHHHHHHHHHHHHhhhchhHHH
Q 013262 127 ILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGS-----------Y-TNIDQGLYAVLGAASLMAGSMRMTVSL 194 (447)
Q Consensus 127 ~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~-----------~-~~~~~~~~a~~G~aa~~~g~~~~p~s~ 194 (447)
++|++-.+.+.+.|.-.|--.|.+-.||++|..+|+-=.. + ..-+-.-+..+|+||..+++.|+|+.+
T Consensus 190 ~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGG 269 (762)
T KOG0474|consen 190 IVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGG 269 (762)
T ss_pred HHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccc
Confidence 3899999999999999999999999999999999876332 0 234566789999999999999999999
Q ss_pred HHHHHHhhcCC---chHHHHHHHHHHHHHHHh
Q 013262 195 CVIFLELTNNL---LLLPITMIVLLIAKTVGD 223 (447)
Q Consensus 195 ~vi~~E~t~~~---~~~~p~~ia~~va~~v~~ 223 (447)
+++.+|--.+. .++.=+.++++++.++-+
T Consensus 270 vLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 270 VLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred eEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 99999965543 355555566555555554
No 225
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.11 E-value=0.047 Score=56.20 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=48.3
Q ss_pred cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262 254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 324 (447)
Q Consensus 254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~ 324 (447)
.+++.+.+ +..++++++++.+++..+.++... +||||++ ++++|+|++.++++.+..
T Consensus 338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----------~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDED-----------QQYVGIISKGMLLRALDR 394 (400)
T ss_pred chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCC-----------CcEEEEEEHHHHHHHHHh
Confidence 35566666 678899999999999999886655 9999987 999999999999988754
No 226
>PRK11573 hypothetical protein; Provisional
Probab=94.66 E-value=0.086 Score=54.53 Aligned_cols=57 Identities=2% Similarity=0.005 Sum_probs=47.1
Q ss_pred CccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262 370 DLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 430 (447)
Q Consensus 370 dl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~ 430 (447)
.++++|.+ +...++.+++++++.+.+.+.+..++||.++ +.+.++|+|..+|++...
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~----~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRD----SLDDAISMLRVREAYRLM 246 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcC----CCCceEEEEEHHHHHHHh
Confidence 35556654 4578899999999999999999999999975 245699999999999754
No 227
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.24 E-value=0.051 Score=54.59 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=51.1
Q ss_pred cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHH
Q 013262 252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 321 (447)
Q Consensus 252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~ 321 (447)
...+.|+|++ +.++.+...++.++-++|++.+...+||||++ +.++-+|+|.||.+.
T Consensus 170 ~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-----------gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 170 SLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDK-----------GELVAMLSRTDLMKN 226 (503)
T ss_pred cchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccC-----------Cceeeeeehhhhhhh
Confidence 4567899999 66888999999999999999999999999998 899999999999763
No 228
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=93.69 E-value=0.15 Score=53.07 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=50.3
Q ss_pred CccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262 370 DLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 433 (447)
Q Consensus 370 dl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~ 433 (447)
.++++|.+ +...++.+.+..++.+.+.+.+..++||+++ +.+.++|+|+.||++.+..+.
T Consensus 207 ~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~----~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDG----DLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred EeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC----CCCcEEEEEEHHHHHHHHhcC
Confidence 45666665 4567888999999999999999999999984 245699999999999988766
No 229
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=92.84 E-value=0.089 Score=56.66 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=57.5
Q ss_pred hccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhhcCc
Q 013262 367 MYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 437 (447)
Q Consensus 367 ~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~~~~ 437 (447)
..+.+.++|.++..++..+++..+..+.+....+|.+|+||+ .+.--++|.|.|+.|.....++.-++
T Consensus 586 h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s---~esmiLlGSV~R~~L~~ll~~~ig~~ 653 (931)
T KOG0476|consen 586 HTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES---KESMILLGSVARRYLTALLQRHIGPE 653 (931)
T ss_pred eEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC---cccceeeehhHHHHHHHHHHhhcCcc
Confidence 345688999999999999999999999888777999999987 33456999999999998887755444
No 230
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=90.80 E-value=0.092 Score=55.50 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcch--HHHHHHHHHHHHHhhhchhHHHHHHHHHhhc
Q 013262 126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQ--GLYAVLGAASLMAGSMRMTVSLCVIFLELTN 203 (447)
Q Consensus 126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~--~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~ 203 (447)
+++|-++.++++++|.+-|-..|+.-++.+.|.++..+++.+..... .-+-...|||..+.+++||+.++++.+|-..
T Consensus 181 l~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~ 260 (696)
T KOG0475|consen 181 LLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVS 260 (696)
T ss_pred HhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhh
Confidence 46799999999999999999999999999999999999987532222 2333445566667789999999999999765
Q ss_pred CCc---hHHHHHHHHHHHHHHHhhc
Q 013262 204 NLL---LLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 204 ~~~---~~~p~~ia~~va~~v~~~l 225 (447)
.+. .+.--.+++++|..+.+.+
T Consensus 261 ~~fp~ktlw~sff~aLsAv~~L~~i 285 (696)
T KOG0475|consen 261 YYFPLKTLWRSFFCALSAVTALRSI 285 (696)
T ss_pred hcCCccchHHHHHHHHHHHHHHeee
Confidence 321 3333445555555555544
No 231
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=89.25 E-value=0.83 Score=46.74 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=42.6
Q ss_pred ccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHH
Q 013262 255 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 323 (447)
Q Consensus 255 v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~ 323 (447)
+.+ +.+ +..++++++++.+++....++.+ .+||+|+ |+++|+|++.+++..|.
T Consensus 328 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~------------~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 328 VES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVEN------------GRIVGVIGDDNIYHALL 380 (382)
T ss_pred hhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC------------CeEEEEEeHHHHHHHHh
Confidence 444 444 67789999999999998887665 4788875 89999999999988764
No 232
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=86.94 E-value=0.87 Score=48.20 Aligned_cols=134 Identities=17% Similarity=0.106 Sum_probs=84.8
Q ss_pred cccccccccccCCCCeeEecCCCCHH-HHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhh
Q 013262 250 MRTLTVGELIDAKPPVITLSGIEKVS-QIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 328 (447)
Q Consensus 250 l~~l~v~diM~~~~~vv~l~~~~tv~-~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~ 328 (447)
+..+.++|+|++-.++..+..+..+. +....+.+.+|+.+||.+.+. ...+|......+..++....
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~----------~~~i~~~L~~~~~~~~~~~~-- 268 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEP----------KNKIGGLLVMNLLRLLQVEV-- 268 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcc----------cchhhHHHHhhhhhhhcccc--
Confidence 56788999999855666666666655 444556688999999998751 33344422222222221100
Q ss_pred hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262 329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 408 (447)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~ 408 (447)
.....++...+......+++++++.+..+.|++...+.+ |+.+
T Consensus 269 ------------------------------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~-~v~~ 311 (498)
T KOG2118|consen 269 ------------------------------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMA-VVRN 311 (498)
T ss_pred ------------------------------------ccccccchhhhccccccCCCcccHHHHHHHHhhhhceeE-EEec
Confidence 001234555566677788999999999999997766555 5443
Q ss_pred cccCCCCcEEEEEeHHHHHHHHHhhhcCcc
Q 013262 409 YEAAGVSPVVGILTRQDLRAFNILTAFPHL 438 (447)
Q Consensus 409 ~~~~g~~~lvGIITr~DLl~~~~~~~~~~~ 438 (447)
..--+++++..|+ ....++...+.
T Consensus 312 -----~~~~~~~~~l~~~-~~~~~ev~de~ 335 (498)
T KOG2118|consen 312 -----GHVDIFVLTLEDL-EEVVKEVEDEE 335 (498)
T ss_pred -----CCcceeeEeccch-hhhcceecccc
Confidence 2347999999998 65555544443
No 233
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=86.77 E-value=0.19 Score=47.13 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=48.1
Q ss_pred ccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262 371 LHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 433 (447)
Q Consensus 371 l~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~ 433 (447)
++++|-+ ..+++..+.++.+....+......+.||+.+ .+..+.||+-.|||++++...
T Consensus 69 vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e----dkD~v~GIL~AKDLL~~~~~~ 129 (293)
T COG4535 69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE----DKDHVEGILLAKDLLPFMRSD 129 (293)
T ss_pred HhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccC----CchhhhhhhhHHHHHHHhcCC
Confidence 3444433 3468889999999999999999999999976 256799999999999987654
No 234
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=83.64 E-value=2.3 Score=42.10 Aligned_cols=49 Identities=29% Similarity=0.415 Sum_probs=40.7
Q ss_pred CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 324 (447)
Q Consensus 264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~ 324 (447)
++.++..++++.+++..+.+.. ..+||||++ ++++|+|++.+++.+|..
T Consensus 336 ~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~-----------~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 336 DVLTVDADTPLSEILARIRQAP-CPVAVVDED-----------GRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccCccchHHHHHHHHhcCC-CceeEEcCC-----------CcEEEEecHHHHHHHHhc
Confidence 5677888899999888887654 458899988 999999999999987753
No 235
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=80.07 E-value=3.5 Score=39.69 Aligned_cols=41 Identities=29% Similarity=0.240 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262 384 ESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 429 (447)
Q Consensus 384 ~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~ 429 (447)
......+++..+...+...+||+|+ +|+++|.||+.+++.+
T Consensus 268 ~~~~~~~~ls~~~~~~~~~~~Vvd~-----~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 268 EGFVDRDALSDFLARGRSVLPVVDE-----DGRPLGTVTRADLLDE 308 (309)
T ss_pred cchhhHHHHHHHHhcCCceeEEECC-----CCcEeeEEEHHHHhhh
Confidence 3444555788888899999999998 5789999999999864
No 236
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=73.37 E-value=5.8 Score=40.01 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=43.4
Q ss_pred ccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262 257 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 322 (447)
Q Consensus 257 diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L 322 (447)
|+++-..++..+++.+++.+-+..+++++-+---|||+- |.+.|+||.+|++.-+
T Consensus 269 d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY-----------G~i~GLVTLEDIlEEI 323 (423)
T COG4536 269 DILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY-----------GDIQGLVTLEDILEEI 323 (423)
T ss_pred HHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEecc-----------CcEEeeeeHHHHHHHH
Confidence 444333367889999999999988887776666688876 9999999999997643
No 237
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=59.34 E-value=15 Score=35.55 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=37.8
Q ss_pred cccccccccccCCCC--eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262 250 MRTLTVGELIDAKPP--VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320 (447)
Q Consensus 250 l~~l~v~diM~~~~~--vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~ 320 (447)
+...++.|.|.+..+ --.+.....-.+++.-+...+...+||||++ |+++|.|++++|..
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~-----------g~~~G~vt~~~l~~ 307 (309)
T COG1125 246 LSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDED-----------GRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCC-----------CcEeeEEEHHHHhh
Confidence 344566666665110 0112222333445555556677889999998 99999999999864
No 238
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=54.03 E-value=71 Score=25.38 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=29.3
Q ss_pred HHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHh
Q 013262 134 LITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAG 186 (447)
Q Consensus 134 ~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g 186 (447)
.++-+-.++-=+|+==..+|+.++-.-|.++-.++.++| .|++|.++.|+-
T Consensus 23 ~L~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~~Pdl~p--lAv~GlgsalGI 73 (89)
T PF04550_consen 23 VLASNEPITLRLFIGRVILGSAVSVVAGAALIQFPDLPP--LAVIGLGSALGI 73 (89)
T ss_pred HHccCCCCchhHHhHHHHHhhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHh
Confidence 344444444444555555555555555555544455555 778888887754
No 239
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=51.78 E-value=14 Score=38.95 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhhcCccccc
Q 013262 386 MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERS 441 (447)
Q Consensus 386 ~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~~~~~~~~ 441 (447)
..++.+.+...+.|-.-++|+++ +++.|+|..||+++.-.++.+.++++.
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~~------~~~~GVI~LkDivK~Gi~ERf~elR~M 462 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVEN------GRILGVIYLKDIVKPGIKERFAELRKM 462 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEEC------CEEEEEEEehhhcchhHHHHHHHHHhc
Confidence 35788888899999999999974 689999999999999888888888764
No 240
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=51.34 E-value=23 Score=29.32 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCcc--hHHHHHHHHHHHHHhhhchh
Q 013262 147 LPIILMGSAYGRLLGMAMGSYTNID--QGLYAVLGAASLMAGSMRMT 191 (447)
Q Consensus 147 ~P~l~iGa~~G~~~g~~~~~~~~~~--~~~~a~~G~aa~~~g~~~~p 191 (447)
.|||.-|..+|.++|..-...+.-. -..+++.|.+++|+|++..-
T Consensus 28 i~SL~aGl~~G~l~g~~s~~l~~~~~~~~~~~l~~~s~~L~gvmg~R 74 (110)
T KOG4267|consen 28 IPSLAAGLLFGALAGYGSYLLSRDKKGGSLVALGGTSAALLGVMGQR 74 (110)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHhhh
Confidence 6999999999999887755432222 23566666788888876543
No 241
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=44.82 E-value=2.2e+02 Score=25.05 Aligned_cols=41 Identities=29% Similarity=0.467 Sum_probs=27.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHH
Q 013262 117 FQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 163 (447)
Q Consensus 117 ~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~ 163 (447)
+.+...+++.++|.++.++.. |+.|.|+++.+- .|.+.+.+
T Consensus 40 ~g~~~a~~v~~lR~~l~~l~~-----G~~~s~~f~~Sl-~Ggl~S~~ 80 (148)
T PF07456_consen 40 LGFKEALLVALLRILLGSLLF-----GTLFSPSFLFSL-AGGLLSLL 80 (148)
T ss_pred cChhHHHHHHHHHHHHHHHHh-----CcchHHHHHHHH-HHHHHHHH
Confidence 345567777888999888764 567789988864 34444433
No 242
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.46 E-value=59 Score=26.09 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 013262 149 IILMGSAYGRLLGMAMGS 166 (447)
Q Consensus 149 ~l~iGa~~G~~~g~~~~~ 166 (447)
++.+||..|.++|.+.+.
T Consensus 31 ilti~aiVg~i~Gf~~Qq 48 (101)
T KOG4112|consen 31 ILTIGAIVGFIYGFAQQQ 48 (101)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778888888877664
No 243
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=37.60 E-value=2.8e+02 Score=31.32 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhch----------hHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 013262 152 MGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRM----------TVSLCVIFLELTNNLLLLPITMIVLLIAKTV 221 (447)
Q Consensus 152 iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~----------p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v 221 (447)
+||+.|.++|.+........+....+.|.++++||.+|- =++.+++.+=..++..+ ...+.-+.+|..+
T Consensus 197 ~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~-~~~~~e~~ia~~l 275 (764)
T TIGR02865 197 AGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAF-SLALYEALIATLL 275 (764)
T ss_pred HhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHH
Confidence 356666666666654444455555666677777787771 12233333322233332 2223344555554
Q ss_pred HhhcCCchHHHHHH
Q 013262 222 GDSFNPSIYEIILE 235 (447)
Q Consensus 222 ~~~l~~sIYd~~l~ 235 (447)
--.+++.+|+..-+
T Consensus 276 Fll~P~~~~~~~~~ 289 (764)
T TIGR02865 276 FLLIPNKIYKKLER 289 (764)
T ss_pred HHHhhHHHHHHHHh
Confidence 44447777775543
No 244
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=35.94 E-value=36 Score=25.88 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhc
Q 013262 146 FLPIILMGSAYGRLLGMAMGS 166 (447)
Q Consensus 146 f~P~l~iGa~~G~~~g~~~~~ 166 (447)
|.-.+++|++.|.++|.++..
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCC
Confidence 566788899999998888764
No 245
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=35.66 E-value=60 Score=35.58 Aligned_cols=146 Identities=11% Similarity=0.046 Sum_probs=76.5
Q ss_pred CCchHHHHHHhhCC--CCCCCCCCcccccccccccccCCCCeeEecCCCC-HHHHHHHHhcCCCCeEEEecCCCCCCCCC
Q 013262 226 NPSIYEIILELKGL--PFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEK-VSQIVDVLRNTTHNGFPVLDEGVVPPSGL 302 (447)
Q Consensus 226 ~~sIYd~~l~~kg~--p~l~~~~~~~l~~l~v~diM~~~~~vv~l~~~~t-v~~~~~~L~~~~~~~fPVVd~~~~~~~~~ 302 (447)
...|.++|.+-+.. |.... .+..+......+.+.+ +-..+....+ +.++.+.+...+ ..+.+.|.+
T Consensus 13 ~~~I~~SW~Rc~~~~~p~~~~-~~~~l~~~~~~~~~~~--~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~------- 81 (638)
T PRK11388 13 SPLIATSWERCNKLMKRETWN-VPHQAQGVTFASIYRR--KKALLTLGQAALEDAWEYMADRE-CALLILDET------- 81 (638)
T ss_pred ChHHHHHHHHHHhcCCCcccC-CCCcCCHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCC-------
Confidence 45577777776533 32211 1122333344455544 3223333333 556666666555 678888887
Q ss_pred CCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHH-HhhhcccccccccchhhhhhccCccccccCCCce
Q 013262 303 ANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVE-LAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYT 381 (447)
Q Consensus 303 ~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~t 381 (447)
|.++.+....++...+....+.+.. .|.+ .... + -+.+ ......|+.
T Consensus 82 ----G~vL~~~g~~~~~~~~~~~~~~~G~------------~w~E~~~GT----------n-----aig~-al~~~~pv~ 129 (638)
T PRK11388 82 ----GCILSRNGDPQTLQQLSALGFNDGT------------YCAEGIIGT----------N-----ALSL-AAISGQPVK 129 (638)
T ss_pred ----ceEEEEeCCHHHHHHHHHcCCccCC------------ccchhccCc----------C-----HHHH-HHhcCCceE
Confidence 9999998888877655432221110 0000 0000 0 0000 011256667
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEe
Q 013262 382 VIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 422 (447)
Q Consensus 382 V~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIIT 422 (447)
|....-..+. +.....-..||.|. .|+++|+|+
T Consensus 130 v~g~EH~~~~---~~~~~c~aaPI~d~-----~G~liGvl~ 162 (638)
T PRK11388 130 TMGDQHFKQA---LHNWAFCATPVFDS-----KGRLTGTIA 162 (638)
T ss_pred EecHHHHHHh---ccCceEEeeEEEcC-----CCCEEEEEE
Confidence 7665555443 44556678999987 578999996
No 246
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=31.60 E-value=1.4e+02 Score=32.10 Aligned_cols=117 Identities=13% Similarity=0.087 Sum_probs=73.1
Q ss_pred ChHHHHHHHhcCCCCCC-----------cchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC
Q 013262 100 TNDDAVRNIFSSNTPTE-----------FQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT 168 (447)
Q Consensus 100 ~~~~~i~~l~~~~~~~~-----------~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~ 168 (447)
++--+.+..|+.+.... +-+|+|.++.-+|+++..+-..-..=||++.=.-.. .+... . .
T Consensus 33 SPLYa~~e~~~~~~~~~v~~~~VlGvlSLi~WtLtlIVTiKYv~~vlRADN~GEGGilsL~aL~----~~~~~----~-~ 103 (627)
T COG3158 33 SPLYALREALSGQGGLGVSRDEVLGVLSLIIWTLTLIVTIKYVLFVLRADNNGEGGILSLMALA----RRAAP----R-R 103 (627)
T ss_pred ChHHHHHHHhccCCCCCCCcceeeeHHHHHHHHHHHHHHHhhheeEEecCCCCCchhhhHHHHH----HhhcC----C-C
Confidence 45566777776543211 225677777778998888888888999987533222 22211 0 0
Q ss_pred CcchHHHHHHHHHHHHHhhhchhHHHHHHHHHh----hcCCc-hHHHHHHHHHHHHHHHhhc
Q 013262 169 NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLEL----TNNLL-LLPITMIVLLIAKTVGDSF 225 (447)
Q Consensus 169 ~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~----t~~~~-~~~p~~ia~~va~~v~~~l 225 (447)
..-....+++|+|-|+|-+.=+|--++.=.+|- +...+ +++|+-+++++.-+.-+.+
T Consensus 104 ~~~l~~~g~iGaalf~GD~vITPAiSVlSAvEGL~iv~p~~~~~Vvpitl~IL~~LF~iQ~~ 165 (627)
T COG3158 104 TALLIILGLIGAALFYGDAVITPAISVLSAVEGLEIVTPALDPYVVPITLIILVLLFLIQRF 165 (627)
T ss_pred chhhhhHHHHhHHHHhcccccchhHHHHHHhccccccCccccCccHHHHHHHHHHHHHHhcc
Confidence 011235678899999988888887777777772 33333 6777777766665544433
No 247
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.67 E-value=1.1e+02 Score=25.48 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhc
Q 013262 150 ILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMR 189 (447)
Q Consensus 150 l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~ 189 (447)
.++|+.+|.+.-++++..+| -.-.+-++||+|.+=-+.|
T Consensus 56 ilVGa~iG~llD~~agTsPw-glIv~lllGf~AG~lnv~R 94 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPW-GLIVFLLLGFGAGVLNVLR 94 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHH
Confidence 56777777777777663211 1235778888775544433
No 248
>COG4129 Predicted membrane protein [Function unknown]
Probab=29.30 E-value=2.1e+02 Score=28.75 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHhhcCCc----hHHHHHHHHHHHHHHHhhc-CCchHHHHHHhh
Q 013262 190 MTVSLCVIFLELTNNLL----LLPITMIVLLIAKTVGDSF-NPSIYEIILELK 237 (447)
Q Consensus 190 ~p~s~~vi~~E~t~~~~----~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~k 237 (447)
..+..+-++.+.+++.. =++-+++++.+|..+.-++ +.. |+....++
T Consensus 108 ~~~~~~~ii~~~~~~~~~~~~r~l~~~vG~~~a~lvn~~~~~~~-~~~~~~~~ 159 (332)
T COG4129 108 ITVGVLHILVAAMIPLFLIFNRFLLVFVGVGVAFLVNLVMPPPD-YELKLYRA 159 (332)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHhhhcCCch-HHHHHHHH
Confidence 33444445555555432 2344678888888888877 433 55444443
No 249
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=28.06 E-value=3.6e+02 Score=23.92 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=44.2
Q ss_pred hhccCCccchhhHHHHHHHHHHHHHHHhhcc---------CCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhc
Q 013262 137 FGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---------TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN 203 (447)
Q Consensus 137 ~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~---------~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~ 203 (447)
+|.+...+.|.-|+.+|. +|..+++..... .+.-||.+|--+|.++..+-.-..++........++
T Consensus 52 ~g~~~~~atfiaa~~vg~-lg~~~sr~~k~p~~v~~vpaIiPlVPG~~ay~am~~~v~~~~~~~~~~~~~~~~~a~ 126 (156)
T COG3610 52 FGFSIVVATFIAAFVVGC-LGNLLSRRYKTPAKVFTVPAIIPLVPGGLAYQAMIALVEGDYLTGLSEGLETTLLAG 126 (156)
T ss_pred cCCcHHHHHHHHHHHHHH-HHHHHHHHhcCChhhhecchhhhcCCcHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 455566677777877774 677777765541 345688888889998887765555555555555554
No 250
>COG4769 Predicted membrane protein [Function unknown]
Probab=26.89 E-value=4.7e+02 Score=23.56 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=29.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHH
Q 013262 116 EFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 163 (447)
Q Consensus 116 ~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~ 163 (447)
.+.+...+....+|.+.+++- .|=+|.|+++.+.+ |...+.+
T Consensus 51 ~l~~~~~~~~i~lr~il~AL~-----sGtlfs~~Fl~sfa-G~i~S~L 92 (181)
T COG4769 51 TLNFKDALQTILLRVILQALF-----SGTLFSPVFLYSFA-GAILSTL 92 (181)
T ss_pred hccHHHHHHHHHHHHHHHHHH-----cCccchHHHHHHHH-HHHHHHH
Confidence 356667777888899988874 45579999998764 4444433
No 251
>COG2370 HupE Hydrogenase/urease accessory protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.74 E-value=4.3e+02 Score=24.27 Aligned_cols=80 Identities=18% Similarity=0.365 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHH-HHHHHHHhhccCCcchHH-HHHHHHHHHHHhhhchhHHHHHHH
Q 013262 121 SILIFFILYCILGLITFGIAVPSGLFLPIILMGSAY-GRLLGMAMGSYTNIDQGL-YAVLGAASLMAGSMRMTVSLCVIF 198 (447)
Q Consensus 121 ~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~-G~~~g~~~~~~~~~~~~~-~a~~G~aa~~~g~~~~p~s~~vi~ 198 (447)
.|+..+.+-++. ++..|+.-|.+.|.-|++.++ |.+.|..=-+.+...|+. -.+++++.+++=..|.|...++.+
T Consensus 51 HL~~mvAVGlw~---a~aag~~~~~~~p~aFV~~mi~G~llgl~gv~LPfvE~~Ia~Sv~~~Gllla~~~rlp~~~~~~l 127 (201)
T COG2370 51 HLLAMVAVGLWA---ALAAGIRAGWLVPLAFVATMILGALLGLSGVHLPFVEPGIAASVLGLGLLLALAARLPLPAVAAL 127 (201)
T ss_pred HHHHHHHHHHHH---HHhcchhhhHHhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 444444444444 334458889999999999865 344443322234456664 467888998888889999888877
Q ss_pred HHhhc
Q 013262 199 LELTN 203 (447)
Q Consensus 199 ~E~t~ 203 (447)
.-+.|
T Consensus 128 ~gifg 132 (201)
T COG2370 128 IGIFG 132 (201)
T ss_pred HHHHH
Confidence 65443
No 252
>PF14150 YesK: YesK-like protein
Probab=24.68 E-value=1.7e+02 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.312 Sum_probs=18.8
Q ss_pred CCccchhhHHHHHHHHHHHHHHHh
Q 013262 141 VPSGLFLPIILMGSAYGRLLGMAM 164 (447)
Q Consensus 141 ~~gG~f~P~l~iGa~~G~~~g~~~ 164 (447)
+-=|+..+..++|+..|.+...+.
T Consensus 57 mg~g~~~~~v~ig~~ig~i~~~~i 80 (81)
T PF14150_consen 57 MGLGVIAFFVFIGSIIGYIAHQFI 80 (81)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 334778999999999998887654
No 253
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=22.56 E-value=4.4e+02 Score=23.47 Aligned_cols=108 Identities=13% Similarity=0.046 Sum_probs=55.5
Q ss_pred CcchhHHhhcCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccc-hhhHHHHHHHHHHHHHHHhhcc
Q 013262 89 HYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL-FLPIILMGSAYGRLLGMAMGSY 167 (447)
Q Consensus 89 ~y~~l~~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~-f~P~l~iGa~~G~~~g~~~~~~ 167 (447)
--|-++..++|+.+..+.....+ +++. + .+ .|+. +.|...+||.+..++.+--+.
T Consensus 36 i~~vlaavllGP~~g~~~a~i~~---------------ll~~----l-~~---~g~~~afpg~~~~a~laGliyrk~~~- 91 (160)
T TIGR02359 36 FVNVIAGVLLGPWYALAVAFIIG---------------LLRN----T-LG---LGTVLAFPGGMPGALLAGLLYRFGRK- 91 (160)
T ss_pred HHHHHHHHHHchHHHHHHHHHHH---------------HHHH----H-hC---CCchHHHHHHHHHHHHHHHHHHHccc-
Confidence 34777888887766655444321 1111 1 11 3455 588888888777776554331
Q ss_pred CCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHh-hcCCchHHHHHHHHHHHHHHH
Q 013262 168 TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLEL-TNNLLLLPITMIVLLIAKTVG 222 (447)
Q Consensus 168 ~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~-t~~~~~~~p~~ia~~va~~v~ 222 (447)
........+-..+..++..-.|++..++--|. ..-+.+++|-..++++...++
T Consensus 92 --~~~a~~ge~igt~iig~~~s~pi~~~~~g~~~~~~~~~~~~~f~~st~~G~~~~ 145 (160)
T TIGR02359 92 --HYWASLGEILGTGIIGSLLAYPVAAWLLGSSENFALFPITLGFIVSTLIGSVIG 145 (160)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 11112222223355566667787766664333 122335666655554444443
No 254
>PF14044 NETI: NETI protein
Probab=22.06 E-value=95 Score=22.54 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.2
Q ss_pred eecCCCCHHHHHHHHHHcCCCEEEEEe
Q 013262 381 TVIESMSVAKAMVLFRQVGLRHLLVVP 407 (447)
Q Consensus 381 tV~~~~sL~~a~~lf~~~gl~~LpVVd 407 (447)
.|.++.++++.++.|++.|. .||-.
T Consensus 3 eV~enETI~~CL~RM~~eGY--~PvrR 27 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPVRR 27 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Cceee
Confidence 57899999999999999998 56643
No 255
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=21.10 E-value=1.6e+02 Score=23.72 Aligned_cols=17 Identities=24% Similarity=0.514 Sum_probs=9.1
Q ss_pred chhhHH--HHHHHHHHHHH
Q 013262 145 LFLPII--LMGSAYGRLLG 161 (447)
Q Consensus 145 ~f~P~l--~iGa~~G~~~g 161 (447)
-+.|.+ ++|+.+|.+..
T Consensus 34 K~iPlIs~viGilLG~~~~ 52 (93)
T PF06946_consen 34 KWIPLISVVIGILLGAAAY 52 (93)
T ss_pred chhhHHHHHHHHHHHHHhh
Confidence 467754 45555555544
No 256
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=21.09 E-value=1.4e+02 Score=31.70 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=41.8
Q ss_pred hhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHH
Q 013262 137 FGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLL 216 (447)
Q Consensus 137 ~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~ 216 (447)
||...|- .|.|+..+|+++|.+++.+++... + +.-+|..- |. +.. ++....+++-++++++
T Consensus 393 fgv~~p~-~~i~a~~iG~avgGa~~~~~gv~~------~------a~~gg~~~-p~----~~~-~~~~~~~~~~~~vG~~ 453 (482)
T PRK11404 393 YALAAPL-PMITANTLAGGITGVLVIAFGIKR------L------APGLGIFD-PL----IGL-MSPVGSFYLVLAIGLA 453 (482)
T ss_pred HHHcCch-HHHHHHHHHHHHHHHHHHHhCCcc------c------ccccCeee-ec----HHh-hccHHHHHHHHHHHHH
Confidence 4444444 677777888888888877766311 1 11122221 21 000 2222346777777777
Q ss_pred HHHHHHhhcCCchHHH
Q 013262 217 IAKTVGDSFNPSIYEI 232 (447)
Q Consensus 217 va~~v~~~l~~sIYd~ 232 (447)
++..+...+.+..+..
T Consensus 454 v~a~~~~~~k~~~~~~ 469 (482)
T PRK11404 454 LNISFIIVLKGLWLRR 469 (482)
T ss_pred HHHHHHHHHhhHhhhh
Confidence 7777766666555544
No 257
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=20.96 E-value=2.5e+02 Score=19.45 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhccCCcc--hHHHHHHHHHHHH
Q 013262 151 LMGSAYGRLLGMAMGSYTNID--QGLYAVLGAASLM 184 (447)
Q Consensus 151 ~iGa~~G~~~g~~~~~~~~~~--~~~~a~~G~aa~~ 184 (447)
.+||.+|..++..+......+ .-..+++||.-.+
T Consensus 5 iiGa~vGg~l~~~lg~~~~~~~~~~i~aviGAiill 40 (48)
T PF04226_consen 5 IIGAFVGGWLFGLLGINGGGSWGSFIVAVIGAIILL 40 (48)
T ss_pred hHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHH
Confidence 367777777776665421222 2245566655444
No 258
>PF07869 DUF1656: Protein of unknown function (DUF1656); InterPro: IPR012451 The proteins in this entry have no known function and belong to the AaeX family.
Probab=20.45 E-value=1e+02 Score=22.38 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhc
Q 013262 143 SGLFLPIILMGSAYGRLLGMAMGS 166 (447)
Q Consensus 143 gG~f~P~l~iGa~~G~~~g~~~~~ 166 (447)
+|++.|++++-+..+.+...+++.
T Consensus 6 ~Gvy~P~ll~~~~~A~~l~~~l~~ 29 (58)
T PF07869_consen 6 GGVYFPPLLVYALLALLLTLLLRR 29 (58)
T ss_pred EeeeHhHHHHHHHHHHHHHHHHHH
Confidence 799999999999888877776654
Done!