Query 013263
Match_columns 446
No_of_seqs 169 out of 1826
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 07:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 4.7E-23 1.6E-27 210.0 9.2 373 7-417 5-474 (592)
2 2p1m_B Transport inhibitor res 99.9 6E-23 2.1E-27 209.3 6.4 363 7-414 2-405 (594)
3 2ast_B S-phase kinase-associat 99.8 4.6E-21 1.6E-25 181.1 2.3 190 7-249 5-205 (336)
4 4fcg_A Uncharacterized protein 99.4 4.8E-14 1.7E-18 132.2 3.3 202 110-361 75-287 (328)
5 4fmz_A Internalin; leucine ric 99.3 7.2E-13 2.5E-17 125.3 4.6 256 116-418 66-323 (347)
6 2p1m_B Transport inhibitor res 99.3 6.2E-13 2.1E-17 135.2 2.1 108 88-198 105-221 (594)
7 2z80_A TOLL-like receptor 2, v 99.3 4.5E-11 1.5E-15 113.2 13.3 261 116-403 52-328 (353)
8 4fmz_A Internalin; leucine ric 99.2 2.5E-12 8.7E-17 121.5 4.2 255 116-418 44-299 (347)
9 1o6v_A Internalin A; bacterial 99.2 1.1E-11 3.7E-16 122.1 7.2 252 116-418 90-343 (466)
10 1o6v_A Internalin A; bacterial 99.2 1E-11 3.5E-16 122.3 6.7 163 88-270 90-253 (466)
11 2z66_A Variable lymphocyte rec 99.2 2.4E-12 8.2E-17 119.5 1.2 248 130-402 19-274 (306)
12 3ogk_B Coronatine-insensitive 99.2 2.5E-12 8.6E-17 130.6 1.4 310 88-415 220-547 (592)
13 3o6n_A APL1; leucine-rich repe 99.2 9.1E-12 3.1E-16 119.7 5.2 61 138-199 114-176 (390)
14 2id5_A Lingo-1, leucine rich r 99.2 2E-12 6.7E-17 127.9 0.1 91 289-393 242-337 (477)
15 2z80_A TOLL-like receptor 2, v 99.2 9.1E-11 3.1E-15 111.1 10.2 188 130-362 43-233 (353)
16 4fcg_A Uncharacterized protein 99.2 2.7E-11 9.4E-16 113.4 6.2 230 140-416 80-311 (328)
17 3oja_B Anopheles plasmodium-re 99.1 1.5E-11 5.1E-16 125.0 4.5 217 117-361 100-334 (597)
18 2ast_B S-phase kinase-associat 99.1 5.4E-12 1.8E-16 118.7 0.7 239 107-388 37-282 (336)
19 3v47_A TOLL-like receptor 5B a 99.1 3.2E-12 1.1E-16 125.5 -0.9 63 291-361 295-357 (455)
20 2id5_A Lingo-1, leucine rich r 99.1 6.1E-12 2.1E-16 124.3 -0.4 202 137-362 124-331 (477)
21 3bz5_A Internalin-J, INLJ; leu 99.1 9.2E-11 3.1E-15 114.9 7.6 96 117-224 43-139 (457)
22 1ogq_A PGIP-2, polygalacturona 99.1 5.8E-12 2E-16 117.2 -1.0 219 117-361 51-278 (313)
23 2z81_A CD282 antigen, TOLL-lik 99.1 4.5E-10 1.5E-14 112.9 12.6 228 116-362 26-262 (549)
24 3vq2_A TLR4, TOLL-like recepto 99.1 2.1E-12 7.2E-17 131.6 -4.6 100 116-223 285-387 (606)
25 1z7x_W Ribonuclease inhibitor; 99.1 8.5E-13 2.9E-17 129.8 -7.5 237 115-361 27-294 (461)
26 3v47_A TOLL-like receptor 5B a 99.1 6.9E-13 2.4E-17 130.3 -8.3 62 291-360 319-380 (455)
27 3rgz_A Protein brassinosteroid 99.1 5.4E-12 1.9E-16 132.0 -2.2 148 116-270 100-257 (768)
28 3zyi_A Leucine-rich repeat-con 99.1 6.6E-12 2.3E-16 123.2 -1.9 60 138-198 96-157 (452)
29 3t6q_A CD180 antigen; protein- 99.1 4.7E-12 1.6E-16 129.1 -3.4 224 116-361 278-510 (606)
30 3o6n_A APL1; leucine-rich repe 99.1 2.3E-11 7.9E-16 116.9 1.4 253 116-417 69-329 (390)
31 3g06_A SSPH2 (leucine-rich rep 99.1 6.7E-11 2.3E-15 119.7 4.6 130 116-269 61-190 (622)
32 1ozn_A Reticulon 4 receptor; N 99.1 2.3E-11 7.8E-16 111.6 1.0 196 141-360 32-234 (285)
33 2z7x_B TOLL-like receptor 1, v 99.1 3.1E-10 1.1E-14 113.3 9.3 65 292-362 321-385 (520)
34 3zyj_A Leucine-rich repeat-con 99.1 5.5E-12 1.9E-16 123.3 -3.6 37 140-176 111-149 (440)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 9.4E-10 3.2E-14 110.9 12.5 104 116-224 76-181 (562)
36 2ca6_A RAN GTPase-activating p 99.0 1.4E-10 4.8E-15 111.2 6.0 68 290-360 211-283 (386)
37 1xku_A Decorin; proteoglycan, 99.0 4.9E-11 1.7E-15 111.8 2.7 243 116-386 76-327 (330)
38 3rgz_A Protein brassinosteroid 99.0 3.2E-12 1.1E-16 133.7 -6.2 216 117-361 78-304 (768)
39 1z7x_W Ribonuclease inhibitor; 99.0 6.2E-13 2.1E-17 130.8 -11.0 235 117-361 86-351 (461)
40 1h6u_A Internalin H; cell adhe 99.0 5.9E-11 2E-15 110.1 2.9 187 116-362 41-228 (308)
41 4eco_A Uncharacterized protein 99.0 5.1E-11 1.7E-15 121.9 2.6 221 116-362 206-468 (636)
42 3o53_A Protein LRIM1, AGAP0063 99.0 1.8E-11 6.1E-16 114.1 -1.1 231 140-414 33-270 (317)
43 3zyj_A Leucine-rich repeat-con 99.0 7.4E-11 2.5E-15 115.3 3.2 240 130-403 55-306 (440)
44 3j0a_A TOLL-like receptor 5; m 99.0 1.8E-10 6.2E-15 121.7 6.3 84 116-200 73-160 (844)
45 3bz5_A Internalin-J, INLJ; leu 99.0 1E-10 3.5E-15 114.6 3.7 146 136-308 37-183 (457)
46 1xku_A Decorin; proteoglycan, 99.0 6.6E-11 2.3E-15 110.9 2.2 269 116-414 52-327 (330)
47 4ecn_A Leucine-rich repeat pro 99.0 7E-11 2.4E-15 123.7 2.5 227 116-360 548-785 (876)
48 3oja_A Leucine-rich immune mol 99.0 3.1E-11 1.1E-15 119.3 -0.4 206 140-387 33-246 (487)
49 2z63_A TOLL-like receptor 4, v 99.0 1.9E-11 6.6E-16 123.5 -2.3 258 116-406 282-549 (570)
50 2z63_A TOLL-like receptor 4, v 99.0 4.2E-11 1.5E-15 121.0 0.2 250 132-418 273-530 (570)
51 2z81_A CD282 antigen, TOLL-lik 99.0 1E-09 3.5E-14 110.3 10.3 243 130-417 17-262 (549)
52 3vq2_A TLR4, TOLL-like recepto 99.0 4.4E-11 1.5E-15 121.8 -0.0 154 137-308 281-437 (606)
53 3o53_A Protein LRIM1, AGAP0063 99.0 8.2E-11 2.8E-15 109.7 1.7 226 104-360 20-271 (317)
54 3oja_A Leucine-rich immune mol 99.0 6.7E-11 2.3E-15 116.9 1.0 212 117-359 35-270 (487)
55 2ft3_A Biglycan; proteoglycan, 99.0 7.9E-11 2.7E-15 110.5 1.4 219 116-362 78-305 (332)
56 3oja_B Anopheles plasmodium-re 99.0 5E-11 1.7E-15 121.1 -0.1 253 116-417 75-335 (597)
57 1h6u_A Internalin H; cell adhe 99.0 2.6E-10 8.9E-15 105.7 4.8 160 89-268 42-203 (308)
58 3j0a_A TOLL-like receptor 5; m 99.0 1.9E-10 6.6E-15 121.5 3.8 106 116-224 266-374 (844)
59 1ogq_A PGIP-2, polygalacturona 99.0 8.6E-12 2.9E-16 116.1 -5.9 244 88-361 50-301 (313)
60 2ft3_A Biglycan; proteoglycan, 99.0 2.2E-11 7.5E-16 114.3 -3.2 269 116-415 54-329 (332)
61 2z66_A Variable lymphocyte rec 99.0 1.6E-12 5.6E-17 120.6 -11.0 219 117-362 29-259 (306)
62 2z7x_B TOLL-like receptor 1, v 99.0 2.4E-10 8.3E-15 114.1 3.7 105 237-361 322-431 (520)
63 4eco_A Uncharacterized protein 98.9 1.1E-10 3.8E-15 119.4 1.1 225 116-360 305-545 (636)
64 4ecn_A Leucine-rich repeat pro 98.9 1.6E-10 5.4E-15 121.0 2.0 224 116-362 448-708 (876)
65 3g06_A SSPH2 (leucine-rich rep 98.9 8.6E-10 2.9E-14 111.6 6.7 246 117-418 41-296 (622)
66 1ozn_A Reticulon 4 receptor; N 98.9 8.3E-11 2.8E-15 107.8 -1.9 211 116-350 32-253 (285)
67 3zyi_A Leucine-rich repeat-con 98.9 6.4E-10 2.2E-14 109.0 4.2 207 116-349 99-317 (452)
68 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 8.1E-10 2.8E-14 72.7 3.1 40 7-46 5-44 (53)
69 3t6q_A CD180 antigen; protein- 98.9 3E-11 1E-15 123.1 -6.0 265 116-407 301-578 (606)
70 3rfs_A Internalin B, repeat mo 98.9 3.6E-10 1.2E-14 102.8 0.9 191 116-361 41-232 (272)
71 1p9a_G Platelet glycoprotein I 98.8 8.7E-10 3E-14 101.2 3.2 216 137-406 6-225 (290)
72 1ziw_A TOLL-like receptor 3; i 98.8 4.7E-10 1.6E-14 115.9 1.4 90 322-417 477-571 (680)
73 2o6q_A Variable lymphocyte rec 98.8 5.1E-10 1.7E-14 101.7 1.3 89 132-224 30-121 (270)
74 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1.4E-09 4.7E-14 109.7 4.5 76 116-199 100-180 (562)
75 1wwl_A Monocyte differentiatio 98.8 4.3E-11 1.5E-15 111.3 -6.3 84 139-223 93-184 (312)
76 1wwl_A Monocyte differentiatio 98.8 1.6E-10 5.4E-15 107.4 -2.6 205 132-360 56-283 (312)
77 2z62_A TOLL-like receptor 4, v 98.8 3.2E-10 1.1E-14 103.3 -1.6 61 138-199 49-111 (276)
78 1h6t_A Internalin B; cell adhe 98.8 1.7E-09 5.8E-14 99.3 3.2 78 117-200 47-124 (291)
79 4glp_A Monocyte differentiatio 98.8 4.1E-10 1.4E-14 104.5 -1.5 108 89-199 65-180 (310)
80 2xwt_C Thyrotropin receptor; s 98.8 5.5E-09 1.9E-13 93.0 5.9 101 117-222 32-140 (239)
81 2o6q_A Variable lymphocyte rec 98.8 5.1E-10 1.8E-14 101.7 -1.1 106 141-252 16-122 (270)
82 2z62_A TOLL-like receptor 4, v 98.8 1E-09 3.5E-14 100.0 0.7 208 130-361 19-234 (276)
83 3goz_A Leucine-rich repeat-con 98.7 1E-09 3.5E-14 104.2 0.2 211 140-362 21-264 (362)
84 1ziw_A TOLL-like receptor 3; i 98.7 2.4E-10 8.3E-15 118.0 -4.6 225 116-360 329-569 (680)
85 2xwt_C Thyrotropin receptor; s 98.7 2.8E-09 9.5E-14 94.9 2.8 90 131-225 24-118 (239)
86 4ezg_A Putative uncharacterize 98.7 1.7E-09 5.7E-14 93.2 0.5 102 117-223 45-147 (197)
87 4ezg_A Putative uncharacterize 98.7 1.2E-08 4E-13 87.9 5.8 61 138-201 41-101 (197)
88 3rfs_A Internalin B, repeat mo 98.7 6E-10 2.1E-14 101.3 -3.1 151 88-252 41-194 (272)
89 2ca6_A RAN GTPase-activating p 98.7 4E-10 1.4E-14 108.0 -4.7 234 116-362 32-314 (386)
90 2ell_A Acidic leucine-rich nuc 98.7 2.7E-09 9.4E-14 89.3 0.3 134 116-251 24-159 (168)
91 1m9s_A Internalin B; cell inva 98.7 3.6E-09 1.2E-13 106.8 0.9 166 116-336 43-208 (605)
92 3goz_A Leucine-rich repeat-con 98.6 1.5E-09 5.1E-14 103.0 -2.3 232 117-360 23-293 (362)
93 1h6t_A Internalin B; cell adhe 98.6 1.6E-08 5.5E-13 92.8 4.1 103 139-252 44-147 (291)
94 1p9a_G Platelet glycoprotein I 98.6 6E-09 2E-13 95.6 0.9 206 117-351 11-224 (290)
95 1xeu_A Internalin C; cellular 98.6 2.6E-08 8.8E-13 89.9 4.4 103 137-250 37-139 (263)
96 1jl5_A Outer protein YOPM; leu 98.6 2.4E-08 8.1E-13 97.7 4.3 135 117-269 132-266 (454)
97 1jl5_A Outer protein YOPM; leu 98.6 2.9E-08 1E-12 97.0 4.1 197 116-362 153-368 (454)
98 2je0_A Acidic leucine-rich nuc 98.5 2.6E-09 8.8E-14 87.5 -3.1 108 116-225 17-126 (149)
99 3m19_A Variable lymphocyte rec 98.5 2.1E-08 7.2E-13 89.9 2.6 184 118-348 16-206 (251)
100 3cvr_A Invasion plasmid antige 98.5 1.3E-07 4.3E-12 94.6 7.1 185 115-337 58-242 (571)
101 4glp_A Monocyte differentiatio 98.5 5.7E-08 2E-12 89.9 3.7 202 88-308 91-307 (310)
102 1xeu_A Internalin C; cellular 98.4 1.3E-08 4.5E-13 91.9 -1.7 164 139-335 17-182 (263)
103 4g8a_A TOLL-like receptor 4; l 98.4 3.5E-07 1.2E-11 93.3 8.4 104 117-224 53-160 (635)
104 3cvr_A Invasion plasmid antige 98.4 8.6E-08 3E-12 95.8 3.2 177 140-362 58-241 (571)
105 3m19_A Variable lymphocyte rec 98.4 2.9E-08 1E-12 88.9 -0.6 147 117-270 36-189 (251)
106 1m9s_A Internalin B; cell inva 98.4 1E-07 3.4E-12 96.3 2.6 141 116-269 65-206 (605)
107 4ay9_X Follicle-stimulating ho 98.3 1.4E-07 4.6E-12 89.0 2.2 219 116-360 30-255 (350)
108 4g8a_A TOLL-like receptor 4; l 98.3 7.2E-08 2.5E-12 98.4 0.2 145 238-406 444-597 (635)
109 2v9t_B SLIT homolog 2 protein 98.3 4.8E-07 1.6E-11 79.2 5.3 154 130-351 23-181 (220)
110 1ds9_A Outer arm dynein; leuci 98.3 8E-08 2.8E-12 82.7 -1.1 89 131-224 38-127 (198)
111 2ell_A Acidic leucine-rich nuc 98.2 2.4E-07 8.2E-12 77.3 1.5 82 140-225 23-108 (168)
112 3e6j_A Variable lymphocyte rec 98.2 2.1E-07 7.3E-12 82.0 0.3 124 141-270 40-169 (229)
113 1a9n_A U2A', U2A'; complex (nu 98.2 7.8E-08 2.7E-12 81.0 -2.7 102 117-223 20-124 (176)
114 4ay9_X Follicle-stimulating ho 98.2 1.5E-06 5.1E-11 81.8 5.5 112 130-249 21-138 (350)
115 3e6j_A Variable lymphocyte rec 98.2 9E-07 3.1E-11 77.9 3.7 129 116-250 40-170 (229)
116 2ra8_A Uncharacterized protein 98.1 1.1E-06 3.9E-11 82.6 3.9 65 178-247 162-227 (362)
117 2ra8_A Uncharacterized protein 98.1 1.9E-06 6.4E-11 81.1 5.4 123 73-197 91-228 (362)
118 2v70_A SLIT-2, SLIT homolog 2 98.1 7.2E-07 2.5E-11 78.0 2.1 124 142-270 33-163 (220)
119 3un9_A NLR family member X1; l 98.1 1.1E-07 3.9E-12 90.1 -3.6 74 287-362 175-250 (372)
120 2o6s_A Variable lymphocyte rec 98.1 4.9E-07 1.7E-11 78.3 0.3 60 139-199 50-111 (208)
121 3e4g_A ATP synthase subunit S, 98.1 5.5E-07 1.9E-11 74.7 0.4 91 131-223 51-150 (176)
122 2v70_A SLIT-2, SLIT homolog 2 98.1 2.5E-06 8.7E-11 74.5 4.6 162 144-348 14-179 (220)
123 2o6s_A Variable lymphocyte rec 98.1 7.2E-07 2.5E-11 77.2 1.0 115 130-251 19-136 (208)
124 2xot_A Amphoterin-induced prot 98.0 8.6E-07 3E-11 83.9 1.1 133 117-253 40-177 (361)
125 2je0_A Acidic leucine-rich nuc 98.0 4.2E-07 1.4E-11 74.1 -1.1 82 140-224 16-100 (149)
126 2e31_A FBS1, F-box only protei 98.0 2.5E-06 8.6E-11 76.6 3.9 37 9-45 49-86 (297)
127 2v9t_B SLIT homolog 2 protein 98.0 5.5E-07 1.9E-11 78.8 -0.4 106 116-225 32-141 (220)
128 1a9n_A U2A', U2A'; complex (nu 98.0 3.8E-07 1.3E-11 76.7 -1.6 84 137-224 15-100 (176)
129 2xot_A Amphoterin-induced prot 97.9 1.6E-06 5.3E-11 82.1 0.2 91 130-224 30-124 (361)
130 3l2o_B F-box only protein 4; s 97.9 2.1E-06 7E-11 76.3 0.9 34 10-43 4-37 (312)
131 2wfh_A SLIT homolog 2 protein 97.9 3E-06 1E-10 72.4 1.2 80 117-199 32-113 (193)
132 1w8a_A SLIT protein; signaling 97.8 2.4E-06 8.1E-11 73.0 0.1 101 119-225 11-115 (192)
133 1dce_A Protein (RAB geranylger 97.8 2.6E-06 9E-11 85.4 0.4 102 117-225 442-546 (567)
134 2o6r_A Variable lymphocyte rec 97.8 7.3E-06 2.5E-10 68.8 1.9 105 141-250 28-135 (177)
135 3e4g_A ATP synthase subunit S, 97.8 3.6E-05 1.2E-09 63.8 6.0 40 322-361 82-124 (176)
136 2o6r_A Variable lymphocyte rec 97.7 7.1E-06 2.4E-10 68.9 0.8 104 117-224 29-136 (177)
137 2wfh_A SLIT homolog 2 protein 97.6 7E-06 2.4E-10 70.1 0.1 91 130-224 22-114 (193)
138 1w8a_A SLIT protein; signaling 97.6 1E-05 3.4E-10 69.0 0.3 104 117-224 30-138 (192)
139 3v7d_B Cell division control p 97.6 1.6E-05 5.3E-10 77.6 1.6 42 6-47 10-51 (464)
140 2ovr_B FBW7, F-BOX/WD repeat p 97.5 4.6E-05 1.6E-09 73.8 3.4 41 4-44 12-52 (445)
141 1dce_A Protein (RAB geranylger 97.5 2E-05 6.7E-10 79.0 0.7 87 115-203 462-548 (567)
142 3g39_A Variable lymphocyte rec 97.5 4E-05 1.4E-09 63.8 2.3 100 119-224 12-114 (170)
143 2r9u_A Variable lymphocyte rec 97.5 4.3E-05 1.5E-09 63.9 2.4 100 119-224 15-117 (174)
144 3un9_A NLR family member X1; l 97.4 2.7E-06 9.2E-11 80.6 -5.9 59 141-199 101-166 (372)
145 1p22_A F-BOX/WD-repeat protein 97.4 4.1E-05 1.4E-09 74.0 1.3 40 4-43 4-47 (435)
146 4b8c_D Glucose-repressible alc 97.3 1.5E-05 5.1E-10 82.5 -2.2 104 116-225 224-329 (727)
147 2r9u_A Variable lymphocyte rec 97.3 9.6E-05 3.3E-09 61.7 3.0 84 116-202 33-119 (174)
148 1ds9_A Outer arm dynein; leuci 97.3 4.5E-05 1.5E-09 65.2 0.7 104 115-225 47-153 (198)
149 3g39_A Variable lymphocyte rec 97.3 0.00012 3.9E-09 61.0 3.0 84 116-202 30-116 (170)
150 2ifg_A High affinity nerve gro 97.2 8.4E-05 2.9E-09 69.6 1.8 93 130-225 21-116 (347)
151 3sb4_A Hypothetical leucine ri 97.2 0.00025 8.4E-09 65.9 4.7 100 238-358 225-328 (329)
152 3sb4_A Hypothetical leucine ri 97.2 9.5E-05 3.2E-09 68.7 1.8 81 259-360 225-306 (329)
153 4b8c_D Glucose-repressible alc 97.1 3.1E-05 1.1E-09 80.0 -3.3 112 133-252 216-329 (727)
154 1io0_A Tropomodulin; LRR prote 96.7 7.5E-05 2.6E-09 63.1 -3.5 98 102-199 20-134 (185)
155 1io0_A Tropomodulin; LRR prote 96.6 0.00023 7.9E-09 60.0 -0.7 62 139-200 34-105 (185)
156 4fdw_A Leucine rich hypothetic 96.1 0.00089 3E-08 63.9 -0.4 61 290-361 295-355 (401)
157 3rw6_A Nuclear RNA export fact 95.8 0.0021 7.3E-08 57.2 0.9 79 116-194 170-257 (267)
158 2ifg_A High affinity nerve gro 95.2 0.0052 1.8E-07 57.2 1.4 81 117-201 32-116 (347)
159 4fdw_A Leucine rich hypothetic 93.8 0.065 2.2E-06 50.9 5.3 210 116-361 157-380 (401)
160 3rw6_A Nuclear RNA export fact 93.4 0.017 5.7E-07 51.4 0.5 63 161-224 168-232 (267)
161 1pgv_A TMD-1, tropomodulin TMD 83.1 0.14 4.6E-06 43.1 -1.5 98 101-198 24-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 81.0 0.092 3.1E-06 44.1 -3.3 62 140-201 40-111 (197)
163 4fs7_A Uncharacterized protein 80.1 0.24 8.4E-06 46.7 -1.1 206 116-360 162-375 (394)
164 3rfe_A Platelet glycoprotein I 79.4 1.3 4.5E-05 34.2 3.2 50 132-183 24-76 (130)
165 4gt6_A Cell surface protein; l 55.4 9.9 0.00034 35.4 4.2 96 117-222 266-367 (394)
166 4gt6_A Cell surface protein; l 55.4 2.4 8.1E-05 39.7 -0.1 55 238-306 333-389 (394)
167 3rfe_A Platelet glycoprotein I 50.6 15 0.00052 28.0 3.9 50 296-351 32-84 (130)
168 4h09_A Hypothetical leucine ri 39.8 13 0.00045 34.2 2.3 95 116-220 240-341 (379)
169 2kwv_A RAD30 homolog B, DNA po 39.6 25 0.00084 21.1 2.6 21 7-27 17-37 (48)
170 4fs7_A Uncharacterized protein 38.6 11 0.00039 35.0 1.7 76 137-222 293-376 (394)
171 4h09_A Hypothetical leucine ri 23.2 42 0.0014 30.7 2.7 78 137-221 236-319 (379)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=4.7e-23 Score=210.02 Aligned_cols=373 Identities=10% Similarity=0.020 Sum_probs=183.2
Q ss_pred CCCcCC----CCchHHHHHHhcCC-ChhhhhhccccchhHHHHhccCCc-eeecccchhhhhhccccchhhhhHHHHHHH
Q 013263 7 TEDRIS----CLPNAILCHILSFL-PTKYAVATCVLSSTWKLVWTSLPN-LCFDDRLCLEFQRNLDLSTVASTRFENFVH 80 (446)
Q Consensus 7 ~~d~is----~LPdelL~~Ils~L-~~~~~~r~s~vsrrWr~lw~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (446)
+.|+++ +||||++.+||+|| +.+|++++++|||||++++...+. +.+.. .+... ..
T Consensus 5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~~~-----------------~~ 66 (592)
T 3ogk_B 5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYTAT-----------------PD 66 (592)
T ss_dssp -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGGSC-----------------HH
T ss_pred hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccccC-----------------hH
Confidence 456666 89999999999999 899999999999999988644331 22111 11100 01
Q ss_pred HHHhcCCCCcceEEEEeccc---------CCcccHHHHHHHHH--hCCceEEEEEecCC---------------------
Q 013263 81 RVLLSASGNINKFSLRCCGL---------VDSSRLKLWVSFAT--MRNVREIEISLNDD--------------------- 128 (446)
Q Consensus 81 ~~l~~~~~~v~~l~l~~~~~---------~~~~~~~~wi~~~~--~~~l~~L~l~~~~~--------------------- 128 (446)
.++ .+-+.++++.++.+.. ........|+.... .+++++|+|+.+..
T Consensus 67 ~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 67 RLS-RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHH-HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHH-HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 111 1113355555544321 11222334444332 23455555543311
Q ss_pred ------ccccCCCcccccCcccEEEecceecccCC------CccCCCCccEEEeeeEEec---cchHHHHhccCCCcceE
Q 013263 129 ------ECIELPHCIYTCKTLEVLKLDMNFFIKTP------PTIFFPSAKILHVILNTID---NNFSDWLFSKCPALEDL 193 (446)
Q Consensus 129 ------~~~~lp~~l~~~~~L~~L~L~~~~~~~~~------~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L 193 (446)
....++.....|++|++|+|.+|.+.+.. ....+++|++|+|+++.+. ...+..++.+||+|+.|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 00111111224555666666555543311 1124556666666555553 34555556666666666
Q ss_pred EEEeeEeCCCCceEEEeccCcceEEEeeccCccc-----------------------ccCceEEEEecccceeEEeeccC
Q 013263 194 SIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEED-----------------------YITKYKVIIRAPNLEQLYIRDHG 250 (446)
Q Consensus 194 ~L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~-----------------------~~~~~~~~~~~p~L~~L~l~~~~ 250 (446)
.+.+|...++ ...-...++|+.|.+..+..... ......+...+++|++|++.++.
T Consensus 226 ~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 226 KVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp ECSSCBGGGG-HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred eccCccHHHH-HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 6666543322 11111124444444442111000 00000111134567777776655
Q ss_pred Ccce----EEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeC-----------Ccccccccccc
Q 013263 251 PGLY----VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSS-----------GTMFALDRLDY 315 (446)
Q Consensus 251 ~~~~----~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~-----------~~~~~~~~~~~ 315 (446)
.... .+..+++|+.+++.. ......+..++..+++|++|.++. +.+.... .
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~~-----------~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~---~ 370 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETRN-----------VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG---L 370 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEG-----------GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH---H
T ss_pred CCHHHHHHHHHhCcCCCEEeccC-----------ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH---H
Confidence 3221 135667777776651 223344555666777788887772 1111000 0
Q ss_pred ccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEeccc-CCCCCCC-cc--cc--cccccceeEEEEEEee
Q 013263 316 ANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGV-DFEWPEP-SL--AL--GCLLSHVKIIVIGEFE 389 (446)
Q Consensus 316 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~-~~~~~~~-~~--~~--~~~~~~L~~v~i~~~~ 389 (446)
......+++|++|++..+ ......+..+...||+|+.|++..++ .....+. .+ .. -...++|+.+.+..+.
T Consensus 371 --~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 371 --IALAQGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp --HHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred --HHHHhhCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 000123677888887433 33666666777778888888887532 1111110 00 00 1124678888886544
Q ss_pred CchhHHHHHHHHHhhccccCeEEEEccc
Q 013263 390 GEENEMKLIKYLLKNGEVLNAMIIGGEQ 417 (446)
Q Consensus 390 g~~~~~~~~~~ll~~a~~L~~l~i~~~~ 417 (446)
|.-. ......+.+.+++|+.+.+....
T Consensus 448 ~~l~-~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 448 GGLT-DLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp GGCC-HHHHHHHHHSCTTCCEEEECSCC
T ss_pred CCcc-HHHHHHHHHhCccceEeeccCCC
Confidence 4211 23445666778889998887554
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=6e-23 Score=209.27 Aligned_cols=363 Identities=15% Similarity=0.101 Sum_probs=196.5
Q ss_pred CCCcCCCCchHHHHHHhcCCC-hhhhhhccccchhHHHHhcc-CCceeecccchhhhhhccccchhhhhHHHHHHHHHHh
Q 013263 7 TEDRISCLPNAILCHILSFLP-TKYAVATCVLSSTWKLVWTS-LPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVLL 84 (446)
Q Consensus 7 ~~d~is~LPdelL~~Ils~L~-~~~~~r~s~vsrrWr~lw~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 84 (446)
+.|++++||||++.+||+||| .+|+++++.|||||+++... ...+.+........ . ..+
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~-----------~---~~~----- 62 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSP-----------A---TVI----- 62 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCH-----------H---HHH-----
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCH-----------H---HHH-----
Confidence 468999999999999999999 99999999999999987321 22233322111000 0 111
Q ss_pred cCCCCcceEEEEeccc---------CCcccHHHHHHHHH--hCCceEEEEEecCCccccCCCccc-ccCcccEEEecce-
Q 013263 85 SASGNINKFSLRCCGL---------VDSSRLKLWVSFAT--MRNVREIEISLNDDECIELPHCIY-TCKTLEVLKLDMN- 151 (446)
Q Consensus 85 ~~~~~v~~l~l~~~~~---------~~~~~~~~wi~~~~--~~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~- 151 (446)
.+-+.++++.++.+.. .+...+..|+.... .+++++|+++.+.. ....+..+. .|++|++|+|.+|
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC-CHHHHHHHHHHCTTCCEEEEESCE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEE-cHHHHHHHHHhCCCCcEEeCCCcC
Confidence 2226688888886541 12245567776554 34677777765432 111122232 4677777777776
Q ss_pred eccc--CCCc-cCCCCccEEEeeeEEeccc---hHHHHhccCCCcceEEEEeeEeCCCC----ceEEEeccCcceEEEee
Q 013263 152 FFIK--TPPT-IFFPSAKILHVILNTIDNN---FSDWLFSKCPALEDLSIKGYIYGTDS----VTLNIPSLTLKRLRLEL 221 (446)
Q Consensus 152 ~~~~--~~~~-~~l~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~~~----~~~~i~~~~L~~L~i~~ 221 (446)
.+.. .+.. ..+++|++|+|++|.+.+. .+..+...|++|++|.+.+|. ..+. ..+...+++|++|++.+
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCC
Confidence 3322 1122 2577777777777766532 244444567777777777653 1110 11111246777777776
Q ss_pred ccCcccccCceEEEEecccceeEEeeccCCc---------ceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHh
Q 013263 222 EAPEEDYITKYKVIIRAPNLEQLYIRDHGPG---------LYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLR 292 (446)
Q Consensus 222 ~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~---------~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (446)
|.... ........+|+|++|.+.++... ...+.++++|+.+. ... ......+..++.
T Consensus 221 ~~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls--~~~---------~~~~~~l~~~~~ 286 (594)
T 2p1m_B 221 AVPLE---KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS--GFW---------DAVPAYLPAVYS 286 (594)
T ss_dssp TSCHH---HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE--CCB---------TCCGGGGGGGHH
T ss_pred CCcHH---HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc--CCc---------ccchhhHHHHHH
Confidence 62211 01112224566777765443210 01234566666552 100 001112333445
Q ss_pred cCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccCC---CCCCC
Q 013263 293 DIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVDF---EWPEP 369 (446)
Q Consensus 293 ~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~---~~~~~ 369 (446)
.++++++|.++.+.+.... ....+..+++|++|++..+ ....++..+...||+|+.|+|..+++. .....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~-----l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYD-----LVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp HHTTCCEEECTTCCCCHHH-----HHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred hhCCCCEEEccCCCCCHHH-----HHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 6788888888776532110 0111246788999999876 356677888888999999999654211 01111
Q ss_pred ccc-c---cccccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEE
Q 013263 370 SLA-L---GCLLSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIG 414 (446)
Q Consensus 370 ~~~-~---~~~~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~ 414 (446)
... . ....++|+.+.+. +.... ...+..+.+++++|+.+.+.
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~-~~~l~--~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYF-CRQMT--NAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEE-ESCCC--HHHHHHHHHHCTTCCEEEEE
T ss_pred CHHHHHHHHHhchhHHHHHHh-cCCcC--HHHHHHHHhhCCCcceeEee
Confidence 110 0 0113789998543 33332 23446666788999999998
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=4.6e-21 Score=181.09 Aligned_cols=190 Identities=12% Similarity=0.030 Sum_probs=115.3
Q ss_pred CCCcCCCCchHHHHHHhcCCChhhhhhccccchhHHHHhcc---CCceeecccchhhhhhccccchhhhhHHHHHHHHHH
Q 013263 7 TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTS---LPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVL 83 (446)
Q Consensus 7 ~~d~is~LPdelL~~Ils~L~~~~~~r~s~vsrrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 83 (446)
+...+++||||++.+||++|+.+|+++++.|||+|+.+... ...+++....+
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~------------------------- 59 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL------------------------- 59 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC-------------------------
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC-------------------------
Confidence 34678999999999999999999999999999999998632 11122221111
Q ss_pred hcCCCCcceEEEEecccCCcccHHHHHHHHHhCCceEEEEEecCCccccCCCcccccCcccEEEecceeccc--CC-Ccc
Q 013263 84 LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIK--TP-PTI 160 (446)
Q Consensus 84 ~~~~~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~--~~-~~~ 160 (446)
. ...+.....++++.+++..+. ....+..++.+++|++|++++|.+.. .+ ...
T Consensus 60 ------------------~----~~~~~~~~~~~l~~L~l~~n~--l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 115 (336)
T 2ast_B 60 ------------------H----PDVTGRLLSQGVIAFRCPRSF--MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 115 (336)
T ss_dssp ------------------C----HHHHHHHHHTTCSEEECTTCE--ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred ------------------C----HHHHHhhhhccceEEEcCCcc--ccccchhhccCCCCCEEEccCCCcCHHHHHHHHh
Confidence 0 122333333567777764332 12233345678888888888887643 12 234
Q ss_pred CCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeE-eCC--CCceEEEeccCcceEEEeec-cCcccccCceEEEE
Q 013263 161 FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI-YGT--DSVTLNIPSLTLKRLRLELE-APEEDYITKYKVII 236 (446)
Q Consensus 161 ~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~-~~~--~~~~~~i~~~~L~~L~i~~~-~~~~~~~~~~~~~~ 236 (446)
.+++|++|+|+++.+.+.. ...+..||+|++|.+.+|. +.+ + ....-..++|++|++.+| ...+. +......
T Consensus 116 ~~~~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~ 191 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFAL-QTLLSSCSRLDELNLSWCFDFTEK--HVQVAVA 191 (336)
T ss_dssp TBCCCSEEECTTCBCCHHH-HHHHTTCTTCSEEECTTCBSCCHHHH-HHHHHHCTTCCEEECCCCTTCCHH--HHHHHHH
T ss_pred hCCCCCEEeCcCcccCHHH-HHHHhcCCCCCEEECCCCCCCCHHHH-HHHHhcCCCCCEEcCCCCCCcChH--HHHHHHH
Confidence 6788888888888766433 3345668888888888873 221 1 111112467777777777 44310 0111122
Q ss_pred ecc-cceeEEeecc
Q 013263 237 RAP-NLEQLYIRDH 249 (446)
Q Consensus 237 ~~p-~L~~L~l~~~ 249 (446)
..| +|++|++.++
T Consensus 192 ~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 192 HVSETITQLNLSGY 205 (336)
T ss_dssp HSCTTCCEEECCSC
T ss_pred hcccCCCEEEeCCC
Confidence 345 6777776665
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.41 E-value=4.8e-14 Score=132.21 Aligned_cols=202 Identities=19% Similarity=0.180 Sum_probs=122.6
Q ss_pred HHHHHhCCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCC-ccCCCCccEEEeeeEEeccchHHHHhccCC
Q 013263 110 VSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCP 188 (446)
Q Consensus 110 i~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp 188 (446)
+......++++|++..+.- ..+|..++.+++|++|+|.++.+...|. +..+++|++|+|+++.+. .+...+.+++
T Consensus 75 l~~~~~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~ 150 (328)
T 4fcg_A 75 LEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLN 150 (328)
T ss_dssp HHHHTSTTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCT
T ss_pred HhcccccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCc
Confidence 3344456899999987764 4889989999999999999998876554 568999999999999887 3334477899
Q ss_pred CcceEEEEeeEeCCCCceEEE----------eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeC
Q 013263 189 ALEDLSIKGYIYGTDSVTLNI----------PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHE 258 (446)
Q Consensus 189 ~Le~L~L~~~~~~~~~~~~~i----------~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~ 258 (446)
+|+.|.+.+|...+. ....+ ..++|+.|++..|..... .......++|++|++.++.....+
T Consensus 151 ~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l----p~~l~~l~~L~~L~L~~N~l~~l~--- 222 (328)
T 4fcg_A 151 RLRELSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL----PASIANLQNLKSLKIRNSPLSALG--- 222 (328)
T ss_dssp TCCEEEEEEETTCCC-CCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC----CGGGGGCTTCCEEEEESSCCCCCC---
T ss_pred CCCEEECCCCCCccc-cChhHhhccchhhhccCCCCCEEECcCCCcCcc----hHhhcCCCCCCEEEccCCCCCcCc---
Confidence 999999999853222 11111 246677777777654311 000112345555555554332210
Q ss_pred CCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccc
Q 013263 259 LHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGAC 338 (446)
Q Consensus 259 ~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 338 (446)
..+..+++++.|.++++...... ...+..+++|+.|+++.+...
T Consensus 223 ------------------------------~~l~~l~~L~~L~Ls~n~~~~~~------p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 223 ------------------------------PAIHHLPKLEELDLRGCTALRNY------PPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp ------------------------------GGGGGCTTCCEEECTTCTTCCBC------CCCTTCCCCCCEEECTTCTTC
T ss_pred ------------------------------hhhccCCCCCEEECcCCcchhhh------HHHhcCCCCCCEEECCCCCch
Confidence 11445666666666654432111 123345566666666654321
Q ss_pred cHHHHHHHHhhCCCCceEEEecc
Q 013263 339 GWLSLAHIFSRMPKLESIVFEEG 361 (446)
Q Consensus 339 ~~~~l~~ll~~~p~L~~L~i~~~ 361 (446)
..++.-+..+++|+.|+|+.+
T Consensus 267 --~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 267 --LTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp --CBCCTTGGGCTTCCEEECTTC
T ss_pred --hhcchhhhcCCCCCEEeCCCC
Confidence 112222456677777777664
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.32 E-value=7.2e-13 Score=125.31 Aligned_cols=256 Identities=11% Similarity=0.064 Sum_probs=148.2
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
+++++|+++.+.. ..++. +..+++|++|++.+|.+...+.+..+++|++|+|+++.+.+-. . +..+++|+.|.+
T Consensus 66 ~~L~~L~l~~n~i--~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLNLNGNQI--TDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEEC
T ss_pred CCccEEEccCCcc--ccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCceeEEEC
Confidence 4677777765542 23333 5567777777777777666555667777777777777766211 1 566777777777
Q ss_pred EeeE-eCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceE-EeCCCCceEEEEEEeeee
Q 013263 196 KGYI-YGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV-VHELHSLTKAVVDYGIEC 273 (446)
Q Consensus 196 ~~~~-~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~~~l~~~~~~ 273 (446)
.+|. .... .. --..++|+.|.+.+|...... . ....++|++|++.++...... +..+++|+.+++....-.
T Consensus 140 ~~n~~~~~~-~~-~~~l~~L~~L~l~~~~~~~~~----~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 140 GANHNLSDL-SP-LSNMTGLNYLTVTESKVKDVT----P-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp TTCTTCCCC-GG-GTTCTTCCEEECCSSCCCCCG----G-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCcccc-cc-hhhCCCCcEEEecCCCcCCch----h-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence 7763 1111 11 112367777777777554221 0 224577777777776543322 556677777766554210
Q ss_pred ecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCC
Q 013263 274 ILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKL 353 (446)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L 353 (446)
+ . ..+..+++++.|.++++.+.... .+..+++|+.|+++.+.-... ..+..+|+|
T Consensus 213 ----~--~-------~~~~~~~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L 267 (347)
T 4fmz_A 213 ----D--I-------TPVANMTRLNSLKIGNNKITDLS--------PLANLSQLTWLEIGTNQISDI----NAVKDLTKL 267 (347)
T ss_dssp ----C--C-------GGGGGCTTCCEEECCSSCCCCCG--------GGTTCTTCCEEECCSSCCCCC----GGGTTCTTC
T ss_pred ----C--C-------chhhcCCcCCEEEccCCccCCCc--------chhcCCCCCEEECCCCccCCC----hhHhcCCCc
Confidence 0 0 01567788888888777655332 145667788888877643222 235677888
Q ss_pred ceEEEecccCCCCCCCcccccccccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEEcccc
Q 013263 354 ESIVFEEGVDFEWPEPSLALGCLLSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIGGEQF 418 (446)
Q Consensus 354 ~~L~i~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~~~~~ 418 (446)
+.|++..+..... . .-...++|+.+.+.+..-... ....+...++|+.+.+...+-
T Consensus 268 ~~L~l~~n~l~~~---~--~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 268 KMLNVGSNQISDI---S--VLNNLSQLNSLFLNNNQLGNE----DMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp CEEECCSSCCCCC---G--GGGGCTTCSEEECCSSCCCGG----GHHHHHTCTTCSEEECCSSSC
T ss_pred CEEEccCCccCCC---h--hhcCCCCCCEEECcCCcCCCc----ChhHhhccccCCEEEccCCcc
Confidence 8888877431111 0 112346788877775432211 122345678888888876653
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.28 E-value=6.2e-13 Score=135.17 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=73.0
Q ss_pred CCcceEEEEecccCCcccHHHHHHHHHhCCceEEEEEecCC-ccccCCCcccccCcccEEEecceecccCC------Ccc
Q 013263 88 GNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDD-ECIELPHCIYTCKTLEVLKLDMNFFIKTP------PTI 160 (446)
Q Consensus 88 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~~~~~~~~------~~~ 160 (446)
+.++.+.++... .....+..... ..+++++|++..+.. ....++....+|++|++|+|.+|.+.+.. ...
T Consensus 105 ~~L~~L~L~~~~-~~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 105 TWLEEIRLKRMV-VTDDCLELIAK--SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TTCCEEEEESCB-CCHHHHHHHHH--HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCeEEeeCcE-EcHHHHHHHHH--hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 678898888653 22222222211 246899999986631 12224444446999999999998865421 112
Q ss_pred CCCCccEEEeeeEE--eccchHHHHhccCCCcceEEEEee
Q 013263 161 FFPSAKILHVILNT--IDNNFSDWLFSKCPALEDLSIKGY 198 (446)
Q Consensus 161 ~l~~L~~L~L~~~~--~~~~~l~~ll~~cp~Le~L~L~~~ 198 (446)
.+++|++|+|+++. +....+..+..+||+|+.|.+.+|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 67899999999886 556778888888999999999876
No 7
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.25 E-value=4.5e-11 Score=113.20 Aligned_cols=261 Identities=14% Similarity=0.129 Sum_probs=171.1
Q ss_pred CCceEEEEEecCCccccCCC-cccccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
.++++|+++.+.- ..+|. .+..+++|++|++.++.+...+ .+..+++|++|+|+++.+.. .-...+.++++|+.
T Consensus 52 ~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCE
Confidence 4799999976653 34555 5677999999999999877642 36689999999999998872 22344778999999
Q ss_pred EEEEeeEeCCCCce-EEE-eccCcceEEEeecc-CcccccCceEEEEecccceeEEeeccCCcce---EEeCCCCceEEE
Q 013263 193 LSIKGYIYGTDSVT-LNI-PSLTLKRLRLELEA-PEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAV 266 (446)
Q Consensus 193 L~L~~~~~~~~~~~-~~i-~~~~L~~L~i~~~~-~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~ 266 (446)
|.+.+|....+ .. -.+ ..++|++|++.+|. ..... .......++|++|++.++..... .+.++++|+.++
T Consensus 129 L~L~~n~l~~l-~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 129 LNLLGNPYKTL-GETSLFSHLTKLQILRVGNMDTFTKIQ---RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp EECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEEC---TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred EECCCCCCccc-CchhhhccCCCCcEEECCCCccccccC---HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 99999875554 22 122 35899999999984 22110 00112357899999998766543 245678888888
Q ss_pred EEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEeccc--ccHHHHH
Q 013263 267 VDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA--CGWLSLA 344 (446)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~--~~~~~l~ 344 (446)
+....- ......++..+++++.|.++++.+..... ...........++.+++....- .....++
T Consensus 205 l~~n~l-----------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 205 LHMKQH-----------ILLLEIFVDVTSSVECLELRDTDLDTFHF---SELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp EECSCS-----------TTHHHHHHHHTTTEEEEEEESCBCTTCCC---C------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred CCCCcc-----------ccchhhhhhhcccccEEECCCCccccccc---cccccccccchhhccccccccccCcchhhhH
Confidence 876531 11223456679999999999987764331 0011122456788888876543 1233566
Q ss_pred HHHhhCCCCceEEEecccCCCCCCCccccc---ccccceeEEEEEE--eeCchhHHHHHHHHHh
Q 013263 345 HIFSRMPKLESIVFEEGVDFEWPEPSLALG---CLLSHVKIIVIGE--FEGEENEMKLIKYLLK 403 (446)
Q Consensus 345 ~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~---~~~~~L~~v~i~~--~~g~~~~~~~~~~ll~ 403 (446)
..+..+|+|+.|+++.+. ....+. ...++|+.+.+.+ +.+....+......++
T Consensus 271 ~~l~~l~~L~~L~Ls~N~------l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~ 328 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQ------LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 328 (353)
T ss_dssp HHHHTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred HHHhcccCCCEEECCCCC------CCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHH
Confidence 678899999999998843 222222 2347899998884 4555444444433333
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.25 E-value=2.5e-12 Score=121.53 Aligned_cols=255 Identities=13% Similarity=0.132 Sum_probs=179.8
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++++|++..+.. ..+|. +..+++|++|++.+|.+...+.+..+++|++|+|+++.+.+- . .+.++++|++|.+
T Consensus 44 ~~L~~L~l~~~~i--~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKV--ASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCC--CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCcc--ccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEEC
Confidence 5899999976652 34443 677999999999999988766688999999999999988732 2 3788999999999
Q ss_pred EeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce-EEeCCCCceEEEEEEeeeee
Q 013263 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECI 274 (446)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~ 274 (446)
.+|...+. .. --..++|+.|++..|...... ......++|++|.+.++..... .+..+++|+.+++..+.-.
T Consensus 118 ~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~- 190 (347)
T 4fmz_A 118 NEDNISDI-SP-LANLTKMYSLNLGANHNLSDL----SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE- 190 (347)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC----GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCC-
T ss_pred cCCcccCc-hh-hccCCceeEEECCCCCCcccc----cchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccc-
Confidence 99876655 33 113589999999998543211 1123568999999998765443 2678899999988765321
Q ss_pred cCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCc
Q 013263 275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLE 354 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~ 354 (446)
+ . ..+..+++++.|.++.+.+.... .+..+++|+.|+++.+....... +..+|+|+
T Consensus 191 ---~--~-------~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~ 246 (347)
T 4fmz_A 191 ---D--I-------SPLASLTSLHYFTAYVNQITDIT--------PVANMTRLNSLKIGNNKITDLSP----LANLSQLT 246 (347)
T ss_dssp ---C--C-------GGGGGCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCCGG----GTTCTTCC
T ss_pred ---c--c-------ccccCCCccceeecccCCCCCCc--------hhhcCCcCCEEEccCCccCCCcc----hhcCCCCC
Confidence 1 1 11678999999999988665432 14577899999998875422222 78999999
Q ss_pred eEEEecccCCCCCCCcccccccccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEEcccc
Q 013263 355 SIVFEEGVDFEWPEPSLALGCLLSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIGGEQF 418 (446)
Q Consensus 355 ~L~i~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~~~~~ 418 (446)
.|++..+.... .. .-...++|+.+.+.+..-.. + . .+...++|+.+.+....-
T Consensus 247 ~L~l~~n~l~~---~~--~~~~l~~L~~L~l~~n~l~~--~---~-~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 247 WLEIGTNQISD---IN--AVKDLTKLKMLNVGSNQISD--I---S-VLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp EEECCSSCCCC---CG--GGTTCTTCCEEECCSSCCCC--C---G-GGGGCTTCSEEECCSSCC
T ss_pred EEECCCCccCC---Ch--hHhcCCCcCEEEccCCccCC--C---h-hhcCCCCCCEEECcCCcC
Confidence 99998853111 11 11234689999887532111 1 1 257789999999987654
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.22 E-value=1.1e-11 Score=122.13 Aligned_cols=252 Identities=15% Similarity=0.131 Sum_probs=140.9
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++++|++..+.. ..++. +..+++|++|++.+|.+...+....+++|++|+|+++.+.+- . .+.++++|+.|.+
T Consensus 90 ~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~l 163 (466)
T 1o6v_A 90 TKLVDILMNNNQI--ADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLSF 163 (466)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC--G-GGTTCTTCSEEEE
T ss_pred ccCCEEECCCCcc--ccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC--h-hhccCCcccEeec
Confidence 3566666654431 22222 445666666666666655544455666666666666666521 1 1455666666666
Q ss_pred EeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce-EEeCCCCceEEEEEEeeee
Q 013263 196 KGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIEC 273 (446)
Q Consensus 196 ~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~ 273 (446)
.++ ..+. .. + ..++|+.|+++.|..... ......++|++|.+.++..... .+..+++|+.+++..+.-
T Consensus 164 ~~~-~~~~-~~--~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l- 233 (466)
T 1o6v_A 164 GNQ-VTDL-KP--LANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL- 233 (466)
T ss_dssp EES-CCCC-GG--GTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-
T ss_pred CCc-ccCc-hh--hccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCc-
Confidence 432 2222 11 2 236677777777654421 0112356777777776654332 245577777777765421
Q ss_pred ecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCC
Q 013263 274 ILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKL 353 (446)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L 353 (446)
.. . ..+..+++++.|.++.+.+.... .+..+++|+.|+++.+....... +..+++|
T Consensus 234 ---~~--~-------~~l~~l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L 289 (466)
T 1o6v_A 234 ---KD--I-------GTLASLTNLTDLDLANNQISNLA--------PLSGLTKLTELKLGANQISNISP----LAGLTAL 289 (466)
T ss_dssp ---CC--C-------GGGGGCTTCSEEECCSSCCCCCG--------GGTTCTTCSEEECCSSCCCCCGG----GTTCTTC
T ss_pred ---cc--c-------hhhhcCCCCCEEECCCCccccch--------hhhcCCCCCEEECCCCccCcccc----ccCCCcc
Confidence 00 0 23567788888888777654322 14566788888887764322211 5678888
Q ss_pred ceEEEecccCCCCCCCcccccccccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEEcccc
Q 013263 354 ESIVFEEGVDFEWPEPSLALGCLLSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIGGEQF 418 (446)
Q Consensus 354 ~~L~i~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~~~~~ 418 (446)
+.|++..+.- .... +-...++|+.+.+.+..-... .. +...++|+++.+....-
T Consensus 290 ~~L~L~~n~l---~~~~--~~~~l~~L~~L~L~~n~l~~~-~~-----~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 290 TNLELNENQL---EDIS--PISNLKNLTYLTLYFNNISDI-SP-----VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp SEEECCSSCC---SCCG--GGGGCTTCSEEECCSSCCSCC-GG-----GGGCTTCCEEECCSSCC
T ss_pred CeEEcCCCcc---cCch--hhcCCCCCCEEECcCCcCCCc-hh-----hccCccCCEeECCCCcc
Confidence 8888877431 1111 123357888888874321111 11 46789999999886643
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.21 E-value=1e-11 Score=122.29 Aligned_cols=163 Identities=14% Similarity=0.084 Sum_probs=98.1
Q ss_pred CCcceEEEEecccCCcccHHHHHHHHHhCCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccE
Q 013263 88 GNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKI 167 (446)
Q Consensus 88 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~ 167 (446)
..++.+.+....-.... . .....++++|+++.+.. ..++. +..+++|++|++.+|.+...+....+++|++
T Consensus 90 ~~L~~L~l~~n~l~~~~---~---~~~l~~L~~L~L~~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 90 TKLVDILMNNNQIADIT---P---LANLTNLTGLTLFNNQI--TDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQ 160 (466)
T ss_dssp TTCCEEECCSSCCCCCG---G---GTTCTTCCEEECCSSCC--CCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSE
T ss_pred ccCCEEECCCCccccCh---h---hcCCCCCCEEECCCCCC--CCChH-HcCCCCCCEEECCCCccCCChhhccCCcccE
Confidence 55677666544321111 1 22345899999987652 33443 6779999999999999887666778888888
Q ss_pred EEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEee
Q 013263 168 LHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIR 247 (446)
Q Consensus 168 L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 247 (446)
|++.. .+.. +.. +.++++|+.|.+.+|...++ ..+ -..++|++|.+.+|...+... .-..++|+.|++.
T Consensus 161 L~l~~-~~~~--~~~-~~~l~~L~~L~l~~n~l~~~-~~l-~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~ 229 (466)
T 1o6v_A 161 LSFGN-QVTD--LKP-LANLTTLERLDISSNKVSDI-SVL-AKLTNLESLIATNNQISDITP-----LGILTNLDELSLN 229 (466)
T ss_dssp EEEEE-SCCC--CGG-GTTCTTCCEEECCSSCCCCC-GGG-GGCTTCSEEECCSSCCCCCGG-----GGGCTTCCEEECC
T ss_pred eecCC-cccC--chh-hccCCCCCEEECcCCcCCCC-hhh-ccCCCCCEEEecCCccccccc-----ccccCCCCEEECC
Confidence 88853 2221 111 56788888888887765444 221 123677777777775542200 1124666666666
Q ss_pred ccCCcce-EEeCCCCceEEEEEEe
Q 013263 248 DHGPGLY-VVHELHSLTKAVVDYG 270 (446)
Q Consensus 248 ~~~~~~~-~~~~~~~L~~~~l~~~ 270 (446)
++..... .+..+++|+.+++..+
T Consensus 230 ~n~l~~~~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 230 GNQLKDIGTLASLTNLTDLDLANN 253 (466)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSS
T ss_pred CCCcccchhhhcCCCCCEEECCCC
Confidence 6544322 2345566666665543
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.20 E-value=2.4e-12 Score=119.48 Aligned_cols=248 Identities=14% Similarity=0.093 Sum_probs=155.6
Q ss_pred cccCCCcccccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEec-cchHHHHhccCCCcceEEEEeeEeCCCCce
Q 013263 130 CIELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTID-NNFSDWLFSKCPALEDLSIKGYIYGTDSVT 206 (446)
Q Consensus 130 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~ 206 (446)
...+|..+. ++|++|+|.++.+...+. +..+++|++|+|+++.+. .+.....+.++++|+.|.+.+|....+ ..
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~ 95 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SS 95 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hh
Confidence 456666443 689999999988876554 458899999999988876 222223345689999999988754433 22
Q ss_pred EEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce---EEeCCCCceEEEEEEeeeeecCCCCchhh
Q 013263 207 LNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDV 283 (446)
Q Consensus 207 ~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~ 283 (446)
.-...++|++|++..|....... .......++|++|++.++..... .+.++++|+.+++....-..
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------- 164 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--------- 164 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTT--TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG---------
T ss_pred hcCCCCCCCEEECCCCccccccc--chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc---------
Confidence 22235889999998875432100 01122457899999988765432 24567889988886543210
Q ss_pred HHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccC
Q 013263 284 AQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVD 363 (446)
Q Consensus 284 ~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~ 363 (446)
......+..+++++.|.++.+.+..+. ...+..+++|+.|+++.+.-.... ...+..+|+|+.|+++.+..
T Consensus 165 -~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 165 -NFLPDIFTELRNLTFLDLSQCQLEQLS------PTAFNSLSSLQVLNMSHNNFFSLD--TFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp -GEECSCCTTCTTCCEEECTTSCCCEEC------TTTTTTCTTCCEEECTTSCCSBCC--SGGGTTCTTCCEEECTTSCC
T ss_pred -ccchhHHhhCcCCCEEECCCCCcCCcC------HHHhcCCCCCCEEECCCCccCccC--hhhccCcccCCEeECCCCCC
Confidence 001123567899999999988776443 344567789999999876431111 11256789999999988541
Q ss_pred CCCCCCcccccccccceeEEEEE--EeeCchhHHHHHHHHH
Q 013263 364 FEWPEPSLALGCLLSHVKIIVIG--EFEGEENEMKLIKYLL 402 (446)
Q Consensus 364 ~~~~~~~~~~~~~~~~L~~v~i~--~~~g~~~~~~~~~~ll 402 (446)
.... . .......++|+.+.+. .+.+......+.+++-
T Consensus 236 ~~~~-~-~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 236 MTSK-K-QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp CBCS-S-SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred cccC-H-HHHHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence 1100 0 0011122589999887 3566655556666663
No 12
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.19 E-value=2.5e-12 Score=130.64 Aligned_cols=310 Identities=15% Similarity=0.026 Sum_probs=170.4
Q ss_pred CCcceEEEEecccCCcccHHHHHHHHHhCCceEEEEEecCC--ccccCCCcccccCcccEEEecceecccCCC-ccCCCC
Q 013263 88 GNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDD--ECIELPHCIYTCKTLEVLKLDMNFFIKTPP-TIFFPS 164 (446)
Q Consensus 88 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~--~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~-~~~l~~ 164 (446)
+.++.+.+.... ...+...+. ...++++|++..... .....+..+..+++|++|++.++.....+. ...+++
T Consensus 220 ~~L~~L~L~~~~---~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 294 (592)
T 3ogk_B 220 RSLVSVKVGDFE---ILELVGFFK--AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294 (592)
T ss_dssp TTCCEEECSSCB---GGGGHHHHH--HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGG
T ss_pred CCCcEEeccCcc---HHHHHHHHh--hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCC
Confidence 456666555422 112333333 235899999964221 113444556678888888888754333232 336788
Q ss_pred ccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeC-CCCceEEEeccCcceEEEee----------ccCcccccCceE
Q 013263 165 AKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYG-TDSVTLNIPSLTLKRLRLEL----------EAPEEDYITKYK 233 (446)
Q Consensus 165 L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~-~~~~~~~i~~~~L~~L~i~~----------~~~~~~~~~~~~ 233 (446)
|++|+|+++.+.+..+..++.+||+|+.|.+.++... ++ ..+.-.+++|++|++.+ |..... .+...
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~ 372 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL-EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIA 372 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHH-HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHH
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHH-HHHHHhCCCCCEEEeecCccccccccccCccCH-HHHHH
Confidence 9999998888777777777888899999988854211 11 11112357888888884 322110 00111
Q ss_pred EEEecccceeEEeeccCCcceE----EeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCcccc
Q 013263 234 VIIRAPNLEQLYIRDHGPGLYV----VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFA 309 (446)
Q Consensus 234 ~~~~~p~L~~L~l~~~~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~ 309 (446)
+...+|+|++|.+.+....... ...+++|+.+++..+.......+ ......+..++..+++++.|.++...-..
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~--~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD--LPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS--CCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC--chHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 1224688888888655443221 22377888888865421110111 12223455667778888888886422110
Q ss_pred ccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccCCCCCCCcccccccccceeEEEEEEee
Q 013263 310 LDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVDFEWPEPSLALGCLLSHVKIIVIGEFE 389 (446)
Q Consensus 310 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~ 389 (446)
. +.........+++|+.|+++.+.. ...++..++..||+|++|+|+.+.-.. ...... ....++|+.+.+.+.+
T Consensus 451 -~--~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 451 -T--DLGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGCCFSE-RAIAAA-VTKLPSLRYLWVQGYR 524 (592)
T ss_dssp -C--HHHHHHHHHSCTTCCEEEECSCCS-SHHHHHHHHTCCTTCCEEEEESCCCBH-HHHHHH-HHHCSSCCEEEEESCB
T ss_pred -c--HHHHHHHHHhCccceEeeccCCCC-CHHHHHHHHhcCcccCeeeccCCCCcH-HHHHHH-HHhcCccCeeECcCCc
Confidence 0 000000012467788888886653 566777788888888888888743100 000000 0123678888887654
Q ss_pred CchhHHHHHHHHHhhccccCeEEEEc
Q 013263 390 GEENEMKLIKYLLKNGEVLNAMIIGG 415 (446)
Q Consensus 390 g~~~~~~~~~~ll~~a~~L~~l~i~~ 415 (446)
-... -++.+.+..+.|....|..
T Consensus 525 it~~---~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 525 ASMT---GQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp CCTT---CTTGGGGCCTTEEEEEECC
T ss_pred CCHH---HHHHHHHhCCCcEEEEecC
Confidence 2211 1244555556665555443
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.19 E-value=9.1e-12 Score=119.73 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=27.0
Q ss_pred cccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeE
Q 013263 138 YTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI 199 (446)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 199 (446)
..+++|++|++.++.+...|. +..+++|++|+|+++.+.. .....+.++++|+.|.+.+|.
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCc
Confidence 334555555555554444322 2344555555555554431 111123445555555555443
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.19 E-value=2e-12 Score=127.88 Aligned_cols=91 Identities=9% Similarity=0.111 Sum_probs=55.4
Q ss_pred HHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccCCCCCC
Q 013263 289 DMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVDFEWPE 368 (446)
Q Consensus 289 ~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~ 368 (446)
..+..+++|+.|.|+.+.+..+. ...+..+++|+.|+|..+.... ..+..+..+++|+.|+++.+.
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~------ 307 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIE------GSMLHELLRLQEIQLVGGQLAV--VEPYAFRGLNYLRVLNVSGNQ------ 307 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEEC------TTSCTTCTTCCEEECCSSCCSE--ECTTTBTTCTTCCEEECCSSC------
T ss_pred HHhcCccccCeeECCCCcCCccC------hhhccccccCCEEECCCCccce--ECHHHhcCcccCCEEECCCCc------
Confidence 34677888888888887765443 2345567788888887654211 112345678889999887732
Q ss_pred Cccccc---ccccceeEEEEEE--eeCchh
Q 013263 369 PSLALG---CLLSHVKIIVIGE--FEGEEN 393 (446)
Q Consensus 369 ~~~~~~---~~~~~L~~v~i~~--~~g~~~ 393 (446)
+...+. ...++|+.+.+.+ +.+...
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 221211 1236788888773 445443
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.16 E-value=9.1e-11 Score=111.10 Aligned_cols=188 Identities=13% Similarity=0.048 Sum_probs=109.5
Q ss_pred cccCCCcccccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceE
Q 013263 130 CIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL 207 (446)
Q Consensus 130 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~ 207 (446)
...+|..+. ++|++|++.++.+...+ .+..+++|++|+|+++.+.. .....+.++++|++|++.+|...++ ..-
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~ 118 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNL-SSS 118 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSC-CHH
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcC-CHh
Confidence 456666544 58899999988776643 35678889999998887762 1123356788888888888765443 111
Q ss_pred EE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHH
Q 013263 208 NI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQA 286 (446)
Q Consensus 208 ~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~ 286 (446)
.+ ..++|++|++.+|..... .. ...+.++++|+.+++..+.......
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l----~~-------------------~~~~~~l~~L~~L~l~~n~~~~~~~--------- 166 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTL----GE-------------------TSLFSHLTKLQILRVGNMDTFTKIQ--------- 166 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSS----CS-------------------SCSCTTCTTCCEEEEEESSSCCEEC---------
T ss_pred HhCCCccCCEEECCCCCCccc----Cc-------------------hhhhccCCCCcEEECCCCccccccC---------
Confidence 11 236677777766644321 00 0012334444444444331100000
Q ss_pred HHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEeccc
Q 013263 287 VVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 287 ~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 362 (446)
...+..+++++.|.++.+.+.... ...+..+++|++|+++.+.... .-..++..+++|+.|++..+.
T Consensus 167 -~~~~~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 167 -RKDFAGLTFLEELEIDASDLQSYE------PKSLKSIQNVSHLILHMKQHIL--LLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp -TTTTTTCCEEEEEEEEETTCCEEC------TTTTTTCSEEEEEEEECSCSTT--HHHHHHHHTTTEEEEEEESCB
T ss_pred -HHHccCCCCCCEEECCCCCcCccC------HHHHhccccCCeecCCCCcccc--chhhhhhhcccccEEECCCCc
Confidence 022456778888888777654332 2344566778888887765321 123355668888888887754
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.15 E-value=2.7e-11 Score=113.39 Aligned_cols=230 Identities=12% Similarity=0.091 Sum_probs=143.9
Q ss_pred cCcccEEEecceecccCCC-ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-eccCcceE
Q 013263 140 CKTLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRL 217 (446)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~L~~L 217 (446)
..++++|+|.++.+...|. ...+++|++|+|+++.+. .+...+.++++|+.|+|.+|.+..+ .. .+ ..++|+.|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~l-p~-~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRAL-PA-SIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCC-CG-GGGGCTTCCEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccC-cH-HHhcCcCCCEE
Confidence 3789999999999887654 567999999999999887 2334467899999999999875533 11 12 24789999
Q ss_pred EEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCe
Q 013263 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNI 297 (446)
Q Consensus 218 ~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 297 (446)
+++.|...+... ..+....+. ..+.++++|+.+++..+.-. .+...+..++++
T Consensus 156 ~L~~n~~~~~~p---------~~~~~~~~~------~~~~~l~~L~~L~L~~n~l~------------~lp~~l~~l~~L 208 (328)
T 4fcg_A 156 SIRACPELTELP---------EPLASTDAS------GEHQGLVNLQSLRLEWTGIR------------SLPASIANLQNL 208 (328)
T ss_dssp EEEEETTCCCCC---------SCSEEEC-C------CCEEESTTCCEEEEEEECCC------------CCCGGGGGCTTC
T ss_pred ECCCCCCccccC---------hhHhhccch------hhhccCCCCCEEECcCCCcC------------cchHhhcCCCCC
Confidence 999875432100 111111111 11344666666666554210 011236789999
Q ss_pred eEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccCCCCCCCcccccccc
Q 013263 298 KSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVDFEWPEPSLALGCLL 377 (446)
Q Consensus 298 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~ 377 (446)
+.|.++.+.+..+. ..+..+++|+.|+++.+.... .++..+..+++|+.|++..+.... .....-...
T Consensus 209 ~~L~L~~N~l~~l~-------~~l~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~---~~p~~~~~l 276 (328)
T 4fcg_A 209 KSLKIRNSPLSALG-------PAIHHLPKLEELDLRGCTALR--NYPPIFGGRAPLKRLILKDCSNLL---TLPLDIHRL 276 (328)
T ss_dssp CEEEEESSCCCCCC-------GGGGGCTTCCEEECTTCTTCC--BCCCCTTCCCCCCEEECTTCTTCC---BCCTTGGGC
T ss_pred CEEEccCCCCCcCc-------hhhccCCCCCEEECcCCcchh--hhHHHhcCCCCCCEEECCCCCchh---hcchhhhcC
Confidence 99999998776443 234567899999998764311 123346789999999998854111 000011234
Q ss_pred cceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEEcc
Q 013263 378 SHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIGGE 416 (446)
Q Consensus 378 ~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~~~ 416 (446)
++|+.+.+.+..-.. .+..-+.+.++|+.+.+...
T Consensus 277 ~~L~~L~L~~n~~~~----~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLS----RLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCCEEECTTCTTCC----CCCGGGGGSCTTCEEECCGG
T ss_pred CCCCEEeCCCCCchh----hccHHHhhccCceEEeCCHH
Confidence 788888887532211 11122467788888877644
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.15 E-value=1.5e-11 Score=124.99 Aligned_cols=217 Identities=14% Similarity=0.129 Sum_probs=99.9
Q ss_pred CceEEEEEecCCccccCCCc-ccccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013263 117 NVREIEISLNDDECIELPHC-IYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
++++|+|+.+.. ..+|.. +..+++|++|+|.+|.+...|. +..+++|++|+|+++.+.. .....+.++++|+.|
T Consensus 100 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 100 TIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNL 176 (597)
T ss_dssp TCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEE
Confidence 455555544431 223322 3345566666666555544332 2355566666666555541 111224455566666
Q ss_pred EEEeeEeCCCCceEEEe-ccCcceEEEeeccCcccc------------cCceEE-EEecccceeEEeeccCCcce-EEeC
Q 013263 194 SIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDY------------ITKYKV-IIRAPNLEQLYIRDHGPGLY-VVHE 258 (446)
Q Consensus 194 ~L~~~~~~~~~~~~~i~-~~~L~~L~i~~~~~~~~~------------~~~~~~-~~~~p~L~~L~l~~~~~~~~-~~~~ 258 (446)
.+.+|.+.+. .+. .++|+.|.+..|...+.. +....+ ....++|+.|.+.++..... .+..
T Consensus 177 ~L~~N~l~~~----~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~ 252 (597)
T 3oja_B 177 QLSSNRLTHV----DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN 252 (597)
T ss_dssp ECTTSCCSBC----CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGG
T ss_pred ECcCCCCCCc----ChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhcc
Confidence 6555543221 111 133444443333221100 000000 00123455555555433221 2445
Q ss_pred CCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccc
Q 013263 259 LHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGAC 338 (446)
Q Consensus 259 ~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 338 (446)
+++|+.+++..+.-.. .....+..+++|+.|.|+++.+..++ .....+++|+.|+|+.+...
T Consensus 253 l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~l~-------~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 253 YPGLVEVDLSYNELEK-----------IMYHPFVKMQRLERLYISNNRLVALN-------LYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp CTTCSEEECCSSCCCE-----------EESGGGTTCSSCCEEECTTSCCCEEE-------CSSSCCTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCccCC-----------CCHHHhcCccCCCEEECCCCCCCCCC-------cccccCCCCcEEECCCCCCC
Confidence 6666666665432110 00123456677777777766555432 12234677888888766432
Q ss_pred cHHHHHHHHhhCCCCceEEEecc
Q 013263 339 GWLSLAHIFSRMPKLESIVFEEG 361 (446)
Q Consensus 339 ~~~~l~~ll~~~p~L~~L~i~~~ 361 (446)
.++..+..+|+|+.|++..+
T Consensus 315 ---~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 315 ---HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp ---CCGGGHHHHTTCSEEECCSS
T ss_pred ---ccCcccccCCCCCEEECCCC
Confidence 12223456777888887764
No 18
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.14 E-value=5.4e-12 Score=118.68 Aligned_cols=239 Identities=13% Similarity=0.104 Sum_probs=133.1
Q ss_pred HHHHHHHHhC-CceEEEEEecCCccccCCCccccc--CcccEEEecceecccC-CCccCCCCccEEEeeeEEeccchHHH
Q 013263 107 KLWVSFATMR-NVREIEISLNDDECIELPHCIYTC--KTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILNTIDNNFSDW 182 (446)
Q Consensus 107 ~~wi~~~~~~-~l~~L~l~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ 182 (446)
.+|-..+... ..+.++++.+... |..+... +++++|++.++.+... +....+++|++|+|+++.+.+..+..
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 112 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred HHHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence 3566555432 3777877543211 2333444 8999999999987664 45567899999999999988777888
Q ss_pred HhccCCCcceEEEEeeEeCCCCceEEE-eccCcceEEEeecc-CcccccCceEEEEecccceeEEeeccCCcceEEeCCC
Q 013263 183 LFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEA-PEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELH 260 (446)
Q Consensus 183 ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~-~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~ 260 (446)
++.+||+|++|.+.+|...+. ..-.+ ..++|++|++.+|. ..+. ... ..+.+++
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~--~l~---------------------~~~~~~~ 168 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEF--ALQ---------------------TLLSSCS 168 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHH--HHH---------------------HHHHHCT
T ss_pred HHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHH--HHH---------------------HHHhcCC
Confidence 999999999999999864321 11111 13566666666552 2100 000 0122344
Q ss_pred CceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCC-CeeEEEEeCCccccccccccccCCCCCCCCccceEEEEeccccc
Q 013263 261 SLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIK-NIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACG 339 (446)
Q Consensus 261 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 339 (446)
+|+.+++..+..+ ....+...+..++ ++++|.++++...... ......+..+++|++|+++.+...+
T Consensus 169 ~L~~L~l~~~~~l---------~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~---~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 169 RLDELNLSWCFDF---------TEKHVQVAVAHVSETITQLNLSGYRKNLQK---SDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp TCCEEECCCCTTC---------CHHHHHHHHHHSCTTCCEEECCSCGGGSCH---HHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred CCCEEcCCCCCCc---------ChHHHHHHHHhcccCCCEEEeCCCcccCCH---HHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 4555444433110 1112445667778 8888888776421100 0000112246677777777665322
Q ss_pred HHHHHHHHhhCCCCceEEEecccCCCCCCCcccccccccceeEEEEEEe
Q 013263 340 WLSLAHIFSRMPKLESIVFEEGVDFEWPEPSLALGCLLSHVKIIVIGEF 388 (446)
Q Consensus 340 ~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~ 388 (446)
...+. .+..+|+|+.|++..+........... ...++|+.+.+.+.
T Consensus 237 ~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 237 NDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLEL--GEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTS
T ss_pred HHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHH--hcCCCCCEEeccCc
Confidence 22222 345667888888776430000000011 12466777777654
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.14 E-value=3.2e-12 Score=125.48 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=32.8
Q ss_pred HhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecc
Q 013263 291 LRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEG 361 (446)
Q Consensus 291 l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 361 (446)
+..+++++.|.++.+.+.... ...+..+++|+.|+++.+.-.. ..+..+..+++|+.|+++.+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKID------DNAFWGLTHLLKLNLSQNFLGS--IDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEEC------TTTTTTCTTCCEEECCSSCCCE--ECGGGGTTCTTCCEEECCSS
T ss_pred cccCCCCCEEECCCCcccccC------hhHhcCcccCCEEECCCCccCC--cChhHhcCcccCCEEECCCC
Confidence 455666777777666554322 2233455666666666543211 01223455666666666653
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.11 E-value=6.1e-12 Score=124.31 Aligned_cols=202 Identities=15% Similarity=0.127 Sum_probs=111.0
Q ss_pred ccccCcccEEEecceecccC--CCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-eccC
Q 013263 137 IYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLT 213 (446)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~ 213 (446)
+..+++|++|++.++.+... ..+.++++|++|+|+++.+.. .....+.++++|+.|.+.+|...+. ....+ ..++
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~ 201 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYR 201 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTT
T ss_pred ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcc
Confidence 34455555555555544322 123455666666666665551 1123355666666666666543222 11111 2356
Q ss_pred cceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceE---EeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHH
Q 013263 214 LKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDM 290 (446)
Q Consensus 214 L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 290 (446)
|+.|++..|...... .......++|++|++.++...... +.++++|+.+++....-.. .. ...
T Consensus 202 L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~----------~~~ 267 (477)
T 2id5_A 202 LKVLEISHWPYLDTM---TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IE----------GSM 267 (477)
T ss_dssp CCEEEEECCTTCCEE---CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-EC----------TTS
T ss_pred cceeeCCCCcccccc---CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc-cC----------hhh
Confidence 777777665432110 000011237888888776654433 5677888888876543111 00 123
Q ss_pred HhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEeccc
Q 013263 291 LRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 291 l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 362 (446)
+..+++++.|.|+++.+..+. ...+..+++|+.|+|+.+.-.. .-...+..+++|+.|++...+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVE------PYAFRGLNYLRVLNVSGNQLTT--LEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEEC------TTTBTTCTTCCEEECCSSCCSC--CCGGGBSCGGGCCEEECCSSC
T ss_pred ccccccCCEEECCCCccceEC------HHHhcCcccCCEEECCCCcCce--eCHhHcCCCcccCEEEccCCC
Confidence 567888999999888766443 3345667888888888764211 111345677888888887765
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.10 E-value=9.2e-11 Score=114.90 Aligned_cols=96 Identities=11% Similarity=-0.035 Sum_probs=46.5
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEE
Q 013263 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (446)
++++|+++.+.. ..+| .+..+++|++|++++|.+...+ ...+++|++|+|+++.+..-. +.++++|+.|.+.
T Consensus 43 ~L~~L~Ls~n~l--~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 43 TLTSLDCHNSSI--TDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCD 114 (457)
T ss_dssp TCCEEECCSSCC--CCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECC
T ss_pred CCCEEEccCCCc--ccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee----cCCCCcCCEEECC
Confidence 555555544432 1223 3444555555555555555432 445555555555555554211 3455555555555
Q ss_pred eeEeCCCCceEEEe-ccCcceEEEeeccC
Q 013263 197 GYIYGTDSVTLNIP-SLTLKRLRLELEAP 224 (446)
Q Consensus 197 ~~~~~~~~~~~~i~-~~~L~~L~i~~~~~ 224 (446)
+|.+.++ . +. .++|+.|.+..|..
T Consensus 115 ~N~l~~l-~---~~~l~~L~~L~l~~N~l 139 (457)
T 3bz5_A 115 TNKLTKL-D---VSQNPLLTYLNCARNTL 139 (457)
T ss_dssp SSCCSCC-C---CTTCTTCCEEECTTSCC
T ss_pred CCcCCee-c---CCCCCcCCEEECCCCcc
Confidence 5543332 1 22 24555555555543
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.10 E-value=5.8e-12 Score=117.25 Aligned_cols=219 Identities=11% Similarity=0.034 Sum_probs=118.3
Q ss_pred CceEEEEEecCCc-cccCCCcccccCcccEEEecc-eeccc-CC-CccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 117 NVREIEISLNDDE-CIELPHCIYTCKTLEVLKLDM-NFFIK-TP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 117 ~l~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~-~~~~~-~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
++++|++..+... ...+|..+..+++|++|++.+ +.+.. .| .+..+++|++|+|+++.+. +.+...+.++++|+.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC-CcCCHHHhCCCCCCE
Confidence 5777777765431 126777777788888888874 54442 23 3557788888888888775 122234567788888
Q ss_pred EEEEeeEeCCCCceEEEe-ccCcceEEEeeccCcccccCceEEEEecc-cceeEEeeccCCcce---EEeCCCCceEEEE
Q 013263 193 LSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAP-NLEQLYIRDHGPGLY---VVHELHSLTKAVV 267 (446)
Q Consensus 193 L~L~~~~~~~~~~~~~i~-~~~L~~L~i~~~~~~~~~~~~~~~~~~~p-~L~~L~l~~~~~~~~---~~~~~~~L~~~~l 267 (446)
|.+.+|.+.+. ..-.+. .++|++|++..|...+.. +..+ ...+ +|++|++.++..... .+..+. |+.+++
T Consensus 130 L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 130 LDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAI--PDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp EECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEEC--CGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred EeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcC--CHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 88887765432 111222 377888888777543110 0000 1123 677777766543211 122233 555555
Q ss_pred EEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHH
Q 013263 268 DYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIF 347 (446)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll 347 (446)
....-.. .....+..+++++.|.++.+.+.... ..+..+++|+.|+++.+.-. ..++..+
T Consensus 205 s~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~l~~L~~L~Ls~N~l~--~~~p~~l 264 (313)
T 1ogq_A 205 SRNMLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDL-------GKVGLSKNLNGLDLRNNRIY--GTLPQGL 264 (313)
T ss_dssp CSSEEEE-----------CCGGGCCTTSCCSEEECCSSEECCBG-------GGCCCCTTCCEEECCSSCCE--ECCCGGG
T ss_pred cCCcccC-----------cCCHHHhcCCCCCEEECCCCceeeec-------CcccccCCCCEEECcCCccc--CcCChHH
Confidence 4432111 01123456667777777666554221 11234566777776655321 0122334
Q ss_pred hhCCCCceEEEecc
Q 013263 348 SRMPKLESIVFEEG 361 (446)
Q Consensus 348 ~~~p~L~~L~i~~~ 361 (446)
..+|+|+.|+++.+
T Consensus 265 ~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 265 TQLKFLHSLNVSFN 278 (313)
T ss_dssp GGCTTCCEEECCSS
T ss_pred hcCcCCCEEECcCC
Confidence 56677777777663
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.10 E-value=4.5e-10 Score=112.93 Aligned_cols=228 Identities=14% Similarity=0.145 Sum_probs=154.2
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
..+++|+++.+.. ....|..+..+++|++|++++|.+...+ .+..+++|++|+|+++.+.. .....+.++++|+.|
T Consensus 26 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCC-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCcc-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEE
Confidence 4799999987653 2333556778999999999999887643 36689999999999998872 223446889999999
Q ss_pred EEEeeEeCCCCce-EEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceE---EeCCCCceEEEEE
Q 013263 194 SIKGYIYGTDSVT-LNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVD 268 (446)
Q Consensus 194 ~L~~~~~~~~~~~-~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~ 268 (446)
.+.+|.+.++ .. -.+ ..++|++|++..|...+.. ........++|++|++.++...... +..+++|+.+++.
T Consensus 104 ~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 104 NLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEI--RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp ECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEE--CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred ECCCCccccc-chhhhhhccCCccEEECCCCcccccc--CHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9999875543 11 112 2489999999998632110 0001123588999999987765432 4557778888876
Q ss_pred EeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEeccc--ccHHHHHHH
Q 013263 269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA--CGWLSLAHI 346 (446)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~--~~~~~l~~l 346 (446)
.... ......++..+++++.|.++.+.+.... .........+++|+.|++..+.. .....+...
T Consensus 181 ~n~~-----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 181 LSES-----------AFLLEIFADILSSVRYLELRDTNLARFQ---FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp CSBS-----------TTHHHHHHHSTTTBSEEEEESCBCTTCC---CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred cCcc-----------cccchhhHhhcccccEEEccCCcccccc---ccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 5532 1122234567999999999998765431 00111223567899999987643 122345556
Q ss_pred HhhCCCCceEEEeccc
Q 013263 347 FSRMPKLESIVFEEGV 362 (446)
Q Consensus 347 l~~~p~L~~L~i~~~~ 362 (446)
+..+++|+.|++..+.
T Consensus 247 ~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 247 LRYILELSEVEFDDCT 262 (549)
T ss_dssp GGGCTTCCEEEEESCE
T ss_pred hhhhcccccccccccc
Confidence 6788999999998865
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.10 E-value=2.1e-12 Score=131.63 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=58.0
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.+++.|++..+.. ..+| .+..+++|++|++.+|.+...|.. .+++|++|+++++...... -+..+|+|+.|.+
T Consensus 285 ~~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l 357 (606)
T 3vq2_A 285 ANVSAMSLAGVSI--KYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDL 357 (606)
T ss_dssp TTCSEEEEESCCC--CCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEEC
T ss_pred CCCCEEEecCccc--hhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch---hhccCCCCCEEEC
Confidence 4788888876553 3455 566677888888888777665655 7777777777776433111 2345666666666
Q ss_pred EeeEeCCCCceE--EE-eccCcceEEEeecc
Q 013263 196 KGYIYGTDSVTL--NI-PSLTLKRLRLELEA 223 (446)
Q Consensus 196 ~~~~~~~~~~~~--~i-~~~~L~~L~i~~~~ 223 (446)
.+|...+. ... .+ ..++|+.|++..|.
T Consensus 358 s~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 358 SRNALSFS-GCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp CSSCEEEE-EECCHHHHCCSCCCEEECCSCS
T ss_pred cCCccCCC-cchhhhhccCCcccEeECCCCc
Confidence 66542211 100 00 12566666666554
No 25
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.09 E-value=8.5e-13 Score=129.85 Aligned_cols=237 Identities=11% Similarity=0.099 Sum_probs=113.3
Q ss_pred hCCceEEEEEecCCcc---ccCCCcccccCcccEEEecceecccC--CC-ccCCC----CccEEEeeeEEeccc---hHH
Q 013263 115 MRNVREIEISLNDDEC---IELPHCIYTCKTLEVLKLDMNFFIKT--PP-TIFFP----SAKILHVILNTIDNN---FSD 181 (446)
Q Consensus 115 ~~~l~~L~l~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~~~~~--~~-~~~l~----~L~~L~L~~~~~~~~---~l~ 181 (446)
.+++++|+++.+.-.. ..++..+..+++|++|+|+++.+.+. .. ...++ +|++|+|+++.+.+. .+.
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 3467777776554211 13444455567777777777665431 01 11233 577777777766632 344
Q ss_pred HHhccCCCcceEEEEeeEeCCCCceEEE------eccCcceEEEeeccCccccc-CceEEEEecccceeEEeeccCCcce
Q 013263 182 WLFSKCPALEDLSIKGYIYGTDSVTLNI------PSLTLKRLRLELEAPEEDYI-TKYKVIIRAPNLEQLYIRDHGPGLY 254 (446)
Q Consensus 182 ~ll~~cp~Le~L~L~~~~~~~~~~~~~i------~~~~L~~L~i~~~~~~~~~~-~~~~~~~~~p~L~~L~l~~~~~~~~ 254 (446)
..+..|++|++|++.+|...+. ....+ ..++|++|++..|....... .........|+|++|++.++.....
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDA-GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHccCCceeEEECCCCcCchH-HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 5556677777777776642211 00000 12357777776665432100 0000111236677777666544221
Q ss_pred E---E-----eCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCc
Q 013263 255 V---V-----HELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPF 326 (446)
Q Consensus 255 ~---~-----~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 326 (446)
. + ...++|+.+++..+.-- ......+...+..++++++|.++.+.+..... ..........+++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~-------~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~-~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVT-------SDNCRDLCGIVASKASLRELALGSNKLGDVGM-AELCPGLLHPSSR 257 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCB-------TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH-HHHHHHHTSTTCC
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCc-------HHHHHHHHHHHHhCCCccEEeccCCcCChHHH-HHHHHHHhcCCCC
Confidence 1 0 12446666665544210 11122344555566677777766654432110 0000000113456
Q ss_pred cceEEEEecccccHH---HHHHHHhhCCCCceEEEecc
Q 013263 327 LNRLEVEGVGACGWL---SLAHIFSRMPKLESIVFEEG 361 (446)
Q Consensus 327 L~~L~L~~~~~~~~~---~l~~ll~~~p~L~~L~i~~~ 361 (446)
|++|+++.+.- ... .+...+..+|+|+.|+++.+
T Consensus 258 L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 258 LRTLWIWECGI-TAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp CCEEECTTSCC-CHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred ceEEECcCCCC-CHHHHHHHHHHHhhCCCcceEECCCC
Confidence 66666665532 222 24455556666666666553
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.09 E-value=6.9e-13 Score=130.28 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=34.6
Q ss_pred HhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEec
Q 013263 291 LRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEE 360 (446)
Q Consensus 291 l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 360 (446)
+..+++++.|.++.+.+..+. ...+..+++|+.|+++.+.-... .+..+..+|+|+.|++..
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSID------SRMFENLDKLEVLDLSYNHIRAL--GDQSFLGLPNLKELALDT 380 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEEC------GGGGTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCS
T ss_pred hcCcccCCEEECCCCccCCcC------hhHhcCcccCCEEECCCCccccc--ChhhccccccccEEECCC
Confidence 455677777777766554332 12234566777777766532110 122345667777777766
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.08 E-value=5.4e-12 Score=132.02 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=91.6
Q ss_pred CCceEEEEEecCCccccCCC--cccccCcccEEEecceecccC-CC--ccCCCCccEEEeeeEEeccchHH--HHhccCC
Q 013263 116 RNVREIEISLNDDECIELPH--CIYTCKTLEVLKLDMNFFIKT-PP--TIFFPSAKILHVILNTIDNNFSD--WLFSKCP 188 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~-~~--~~~l~~L~~L~L~~~~~~~~~l~--~ll~~cp 188 (446)
+++++|+|+.+.. ...+|. .+.++++|++|+|++|.+... +. ...+++|++|+|+++.+...... ..+.+|+
T Consensus 100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 3677787765432 234555 677788888888888776542 22 14678888888888877632222 2367788
Q ss_pred CcceEEEEeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcc---eEEeCCCCceEE
Q 013263 189 ALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL---YVVHELHSLTKA 265 (446)
Q Consensus 189 ~Le~L~L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~~ 265 (446)
+|+.|.+.+|.+.+. ... -..++|++|++..|...+. ... .-..++|++|++.++.... ..+.++++|+.+
T Consensus 179 ~L~~L~Ls~n~l~~~-~~~-~~l~~L~~L~Ls~n~l~~~---~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 179 ELKHLAISGNKISGD-VDV-SRCVNLEFLDVSSNNFSTG---IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TCCEEECCSSEEESC-CBC-TTCTTCCEEECCSSCCCSC---CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred CCCEEECCCCccccc-CCc-ccCCcCCEEECcCCcCCCC---Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 888888888765443 222 2347788888887765431 111 2345777777777765432 124556677776
Q ss_pred EEEEe
Q 013263 266 VVDYG 270 (446)
Q Consensus 266 ~l~~~ 270 (446)
++..+
T Consensus 253 ~Ls~n 257 (768)
T 3rgz_A 253 NISSN 257 (768)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 66554
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.07 E-value=6.6e-12 Score=123.17 Aligned_cols=60 Identities=20% Similarity=0.146 Sum_probs=24.6
Q ss_pred cccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEee
Q 013263 138 YTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGY 198 (446)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 198 (446)
.++++|++|+|.+|.+...+ .+.++++|++|+|+++.+.. .-...+.++++|+.|.|.+|
T Consensus 96 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSC
T ss_pred CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCC
Confidence 33444555555444433321 22344444455444444431 01112334444444444443
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.07 E-value=4.7e-12 Score=129.05 Aligned_cols=224 Identities=18% Similarity=0.184 Sum_probs=131.4
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccC--CCccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
.++++|+++.+. ...+|..+..+++|++|++.+|.+... ..+..+++|++|+++++.+....-...+.++++|+.|
T Consensus 278 ~~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 467888876655 347788888888999999988877653 2456788888888888866522222336678999999
Q ss_pred EEEeeEeCCCCc--eEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce----EEeCCCCceEEE
Q 013263 194 SIKGYIYGTDSV--TLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY----VVHELHSLTKAV 266 (446)
Q Consensus 194 ~L~~~~~~~~~~--~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~~~~L~~~~ 266 (446)
.+.+|...+. . ...+ ..++|+.|++..|...+... ......++|++|++.++..... .+.++++|+.++
T Consensus 356 ~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 356 DLSHDDIETS-DCCNLQLRNLSHLQSLNLSYNEPLSLKT---EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp ECCSSCCCEE-EESTTTTTTCTTCCEEECCSCSCEEECT---TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred ECCCCccccc-cCcchhcccCCCCCEEECCCCcCCcCCH---HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 9988754322 1 0011 24788999998886432100 0111357788888877543221 245677777777
Q ss_pred EEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHH
Q 013263 267 VDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHI 346 (446)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l 346 (446)
+..+.-.. .....+..+++++.|.++++.+.... ......+..+++|+.|+++.+.-.. ..+..
T Consensus 432 l~~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~ 495 (606)
T 3t6q_A 432 LSHSLLDI-----------SSEQLFDGLPALQHLNLQGNHFPKGN---IQKTNSLQTLGRLEILVLSFCDLSS--IDQHA 495 (606)
T ss_dssp CTTCCCBT-----------TCTTTTTTCTTCCEEECTTCBCGGGE---ECSSCGGGGCTTCCEEECTTSCCCE--ECTTT
T ss_pred CCCCccCC-----------cCHHHHhCCCCCCEEECCCCCCCccc---cccchhhccCCCccEEECCCCccCc--cChhh
Confidence 76543210 01123456777777777776553211 0011223455667777666553211 01123
Q ss_pred HhhCCCCceEEEecc
Q 013263 347 FSRMPKLESIVFEEG 361 (446)
Q Consensus 347 l~~~p~L~~L~i~~~ 361 (446)
+..+|+|+.|+++.+
T Consensus 496 ~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHN 510 (606)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hccccCCCEEECCCC
Confidence 455667777777664
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.06 E-value=2.3e-11 Score=116.89 Aligned_cols=253 Identities=13% Similarity=0.109 Sum_probs=143.1
Q ss_pred CCceEEEEEecCCccccCCC-cccccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
+++++|++..+.. ..++. .+..+++|++|+|.++.+...++ +..+++|++|+|+++.+. .--..++.++++|++
T Consensus 69 ~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 69 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred ccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcE
Confidence 4677777765442 23333 45567778888887777665422 346777888888777766 111223466777888
Q ss_pred EEEEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEee
Q 013263 193 LSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGI 271 (446)
Q Consensus 193 L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~ 271 (446)
|.+.+|.+.+. ..-.+ ..++|+.|++..|...... ....|+|+.+.+.++..... ...+.|+.+++....
T Consensus 146 L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~------~~~l~~L~~L~l~~n~l~~~--~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 146 LSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVD------LSLIPSLFHANVSYNLLSTL--AIPIAVEELDASHNS 216 (390)
T ss_dssp EECCSSCCCBC-CTTTTSSCTTCCEEECCSSCCSBCC------GGGCTTCSEEECCSSCCSEE--ECCSSCSEEECCSSC
T ss_pred EECCCCccCcc-ChhhccCCCCCCEEECCCCcCCccc------cccccccceeeccccccccc--CCCCcceEEECCCCe
Confidence 87777654333 11112 2367777777777654210 11246777777776654432 334566666665432
Q ss_pred eeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCC
Q 013263 272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMP 351 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p 351 (446)
-..-+ ....++++.|.++.+.+... ..+..+++|+.|+++.+.-... .+..+..+|
T Consensus 217 l~~~~--------------~~~~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~ 272 (390)
T 3o6n_A 217 INVVR--------------GPVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKI--MYHPFVKMQ 272 (390)
T ss_dssp CCEEE--------------CCCCSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEE--ESGGGTTCS
T ss_pred eeecc--------------ccccccccEEECCCCCCccc--------HHHcCCCCccEEECCCCcCCCc--ChhHccccc
Confidence 11000 01346788888887765421 2234667888888887642111 123456788
Q ss_pred CCceEEEecccCCCCCCCcccc--cccccceeEEEEEEee--CchhHHHHHHHHHhhccccCeEEEEccc
Q 013263 352 KLESIVFEEGVDFEWPEPSLAL--GCLLSHVKIIVIGEFE--GEENEMKLIKYLLKNGEVLNAMIIGGEQ 417 (446)
Q Consensus 352 ~L~~L~i~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~~~--g~~~~~~~~~~ll~~a~~L~~l~i~~~~ 417 (446)
+|+.|++..+. ....+ ....++|+.+.+.+.. +.+.. +...++|+++.+....
T Consensus 273 ~L~~L~L~~n~------l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 273 RLERLYISNNR------LVALNLYGQPIPTLKVLDLSHNHLLHVERN-------QPQFDRLENLYLDHNS 329 (390)
T ss_dssp SCCEEECCSSC------CCEEECSSSCCTTCCEEECCSSCCCCCGGG-------HHHHTTCSEEECCSSC
T ss_pred cCCEEECCCCc------CcccCcccCCCCCCCEEECCCCcceecCcc-------ccccCcCCEEECCCCc
Confidence 89999987743 11111 1234689988887432 22211 1344677777766544
No 31
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.06 E-value=6.7e-11 Score=119.69 Aligned_cols=130 Identities=16% Similarity=0.088 Sum_probs=73.8
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++++|+++.+.. ..+|. .+++|++|+|++|.+...|. .+++|++|+|+++.+.. +. ..+++|+.|.+
T Consensus 61 ~~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l~---~~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--LP---ALPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--CC---CCCTTCCEEEC
T ss_pred CCCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--CC---CCCCCcCEEEC
Confidence 4677777766542 34555 45677777777777766554 66777777777776651 11 14566777777
Q ss_pred EeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEE
Q 013263 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDY 269 (446)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~ 269 (446)
.+|.+..+ . ...++|++|++++|...+. ....++|+.|.+.++....+. ..+++|+.+++..
T Consensus 129 ~~N~l~~l-p---~~l~~L~~L~Ls~N~l~~l-------~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 129 FGNQLTSL-P---VLPPGLQELSVSDNQLASL-------PALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSD 190 (622)
T ss_dssp CSSCCSCC-C---CCCTTCCEEECCSSCCSCC-------CCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCS
T ss_pred CCCCCCcC-C---CCCCCCCEEECcCCcCCCc-------CCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCC
Confidence 76654333 1 1236777777777654421 012345555555555444333 3345555555543
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.06 E-value=2.3e-11 Score=111.59 Aligned_cols=196 Identities=15% Similarity=0.109 Sum_probs=94.7
Q ss_pred CcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeE-eCCCCceEEE-eccCcce
Q 013263 141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI-YGTDSVTLNI-PSLTLKR 216 (446)
Q Consensus 141 ~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~-~~~~~~~~~i-~~~~L~~ 216 (446)
++|++|++.++.+...+ .+..+++|++|+|+++.+..- ....+.++++|+.|.+.+|. ...+ ..-.+ ..++|+.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCE
Confidence 46666777666655432 244566677777766655511 11234556667777666653 2222 11111 1256666
Q ss_pred EEEeeccCcccccCceEEEEecccceeEEeeccCCcceE---EeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhc
Q 013263 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD 293 (446)
Q Consensus 217 L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (446)
|++..|...... .......++|++|++.++...... +.++++|+.+++....-.. .. ...+..
T Consensus 110 L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~----------~~~~~~ 175 (285)
T 1ozn_A 110 LHLDRCGLQELG---PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VP----------ERAFRG 175 (285)
T ss_dssp EECTTSCCCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-EC----------TTTTTT
T ss_pred EECCCCcCCEEC---HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cC----------HHHhcC
Confidence 666665443210 000112456666666655433222 3344555555544321100 00 012345
Q ss_pred CCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEec
Q 013263 294 IKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEE 360 (446)
Q Consensus 294 l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 360 (446)
+++++.|.++++.+.... ...+..+++|+.|+++.+.-.. .....+..+|+|+.|++..
T Consensus 176 l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVH------PHAFRDLGRLMTLYLFANNLSA--LPTEALAPLRALQYLRLND 234 (285)
T ss_dssp CTTCCEEECCSSCCCEEC------TTTTTTCTTCCEEECCSSCCSC--CCHHHHTTCTTCCEEECCS
T ss_pred ccccCEEECCCCcccccC------HhHccCcccccEeeCCCCcCCc--CCHHHcccCcccCEEeccC
Confidence 666677776666554332 2334455666666666553211 1123455666666666655
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.05 E-value=3.1e-10 Score=113.31 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=48.6
Q ss_pred hcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEeccc
Q 013263 292 RDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 292 ~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 362 (446)
..++++++|.++.+.+.... ...+..+++|+.|+++.+.-.....++..+..+++|+.|+++.+.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTV------FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTT------TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred hhCCcccEEEeECCccChhh------hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 46778888888877654311 234457789999999888765556677888999999999998865
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.05 E-value=5.5e-12 Score=123.29 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=15.5
Q ss_pred cCcccEEEecceecccCCC--ccCCCCccEEEeeeEEec
Q 013263 140 CKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTID 176 (446)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~ 176 (446)
+++|++|+|.+|.+...+. +..+++|++|+|+++.+.
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 4444444444444433221 234444444444444433
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.05 E-value=9.4e-10 Score=110.92 Aligned_cols=104 Identities=19% Similarity=0.100 Sum_probs=65.3
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++++|+++.+.. ....|..+..+++|++|+|++|.+...|.. .+++|++|+|+++.+..-.....+.++++|+.|.+
T Consensus 76 ~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 76 SELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp TTCCEEECCSCCC-CEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred CCccEEECCCCCC-CcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEec
Confidence 4678888766542 122244556678888888888877665554 78888888888887763222234667788888888
Q ss_pred EeeEeCCCCceEEEeccCc--ceEEEeeccC
Q 013263 196 KGYIYGTDSVTLNIPSLTL--KRLRLELEAP 224 (446)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~L--~~L~i~~~~~ 224 (446)
.++..... ... ..++| +.|.+..|..
T Consensus 154 ~~n~l~~~-~~~--~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 154 SAAKFRQL-DLL--PVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ECSBCCTT-TTG--GGTTSCEEEEEEEESSC
T ss_pred CCCccccC-chh--hhhhceeeEEEeecccc
Confidence 87754332 111 11344 7777777654
No 36
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.04 E-value=1.4e-10 Score=111.19 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=38.3
Q ss_pred HHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHH---HHHHHHhh--CCCCceEEEec
Q 013263 290 MLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWL---SLAHIFSR--MPKLESIVFEE 360 (446)
Q Consensus 290 ~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~---~l~~ll~~--~p~L~~L~i~~ 360 (446)
.+..+++|+.|.|+.+.+..... ......+..+++|++|+|+.+.- ... .++..+.. +|+|+.|.+..
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~--~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGS--SALAIALKSWPNLRELGLNDCLL-SARGAAAVVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHH--HHHHHHGGGCTTCCEEECTTCCC-CHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred HhhcCCCccEEECcCCCCCcHHH--HHHHHHHccCCCcCEEECCCCCC-chhhHHHHHHHHhhccCCCeEEEECcC
Confidence 55677788888887776521000 00012234566777777776653 222 23445544 77788888766
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.04 E-value=4.9e-11 Score=111.83 Aligned_cols=243 Identities=12% Similarity=0.106 Sum_probs=154.4
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++++|+++.+.. ....|..+..+++|++|++.++.+...|.. .+++|++|+++++.+.. .....+.++++|+.|.+
T Consensus 76 ~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELRVHENEITK-VRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCSBCCSS-CCTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEEC
T ss_pred CCCCEEECCCCcC-CeeCHHHhcCCCCCCEEECCCCcCCccChh-hcccccEEECCCCcccc-cCHhHhcCCccccEEEC
Confidence 5799999986653 223366777899999999999988775433 34899999999998872 22345788999999999
Q ss_pred EeeEeCCCC-ceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce---EEeCCCCceEEEEEEe
Q 013263 196 KGYIYGTDS-VTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYG 270 (446)
Q Consensus 196 ~~~~~~~~~-~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~ 270 (446)
.+|...... ....+ ..++|+.|++..|........ ..++|++|++.++..... .+..+++|+.+++...
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 987643210 11112 248899999998876532111 128999999998766544 3567889999888765
Q ss_pred eeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccH--HHHH--HH
Q 013263 271 IECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGW--LSLA--HI 346 (446)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~l~--~l 346 (446)
.-.. . ....+..+++++.|.++++.+..++ ..+..+++|+.|+++.+.-... ..+. ..
T Consensus 227 ~l~~-~----------~~~~~~~l~~L~~L~L~~N~l~~lp-------~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 227 SISA-V----------DNGSLANTPHLRELHLNNNKLVKVP-------GGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp CCCE-E----------CTTTGGGSTTCCEEECCSSCCSSCC-------TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred cCce-e----------ChhhccCCCCCCEEECCCCcCccCC-------hhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 3211 0 0123567899999999998776443 3345678899999986542111 0000 01
Q ss_pred HhhCCCCceEEEecccCCCCCCCcccccccccceeEEEEE
Q 013263 347 FSRMPKLESIVFEEGVDFEWPEPSLALGCLLSHVKIIVIG 386 (446)
Q Consensus 347 l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~L~~v~i~ 386 (446)
....+.|+.|++.+.+...|........| ..+++.+.+.
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~-~~~l~~l~L~ 327 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRC-VYVRAAVQLG 327 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTT-CCCGGGEEC-
T ss_pred ccccccccceEeecCcccccccCcccccc-ccceeEEEec
Confidence 12357888888877542222211111222 3556666544
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.04 E-value=3.2e-12 Score=133.72 Aligned_cols=216 Identities=15% Similarity=0.039 Sum_probs=139.6
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceeccc-CC---CccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIK-TP---PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-~~---~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
.++.++++.+. ...+|..+..+++|++|+|++|.+.. .| ....+++|++|+|+++.+....-..++.++++|++
T Consensus 78 ~L~~l~~~~~~--~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 78 GLESLFLSNSH--INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp TCCEEECTTSC--EEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred cccccCCcCCC--cCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 34444444333 45677888889999999999998753 12 45689999999999998873322333468999999
Q ss_pred EEEEeeEeCCCCceEE---E-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcc--eEEeCCCCceEEE
Q 013263 193 LSIKGYIYGTDSVTLN---I-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL--YVVHELHSLTKAV 266 (446)
Q Consensus 193 L~L~~~~~~~~~~~~~---i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~L~~~~ 266 (446)
|++.+|.+.+. .... + ..++|++|++..|...+. .. ....++|++|++.++.... ..+.++++|+.++
T Consensus 156 L~Ls~n~l~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~ 229 (768)
T 3rgz_A 156 LDLSANSISGA-NVVGWVLSDGCGELKHLAISGNKISGD----VD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLD 229 (768)
T ss_dssp EECCSSCCEEE-THHHHHHTTCCTTCCEEECCSSEEESC----CB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEE
T ss_pred EECCCCccCCc-CChhhhhhccCCCCCEEECCCCccccc----CC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEE
Confidence 99998764332 1111 2 348999999998865432 11 1457899999999876533 2267889999998
Q ss_pred EEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHH-H
Q 013263 267 VDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLA-H 345 (446)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~-~ 345 (446)
+..+.- .......+..+++++.|.++.+.+.... . ...+++|++|++..+... . .++ .
T Consensus 230 Ls~n~l-----------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-------~-~~~l~~L~~L~L~~n~l~-~-~ip~~ 288 (768)
T 3rgz_A 230 ISGNKL-----------SGDFSRAISTCTELKLLNISSNQFVGPI-------P-PLPLKSLQYLSLAENKFT-G-EIPDF 288 (768)
T ss_dssp CCSSCC-----------CSCHHHHTTTCSSCCEEECCSSCCEESC-------C-CCCCTTCCEEECCSSEEE-E-SCCCC
T ss_pred CcCCcC-----------CCcccHHHhcCCCCCEEECCCCcccCcc-------C-ccccCCCCEEECcCCccC-C-ccCHH
Confidence 876532 1124456788999999999988654211 0 014566777777654310 0 011 1
Q ss_pred HHhhCCCCceEEEecc
Q 013263 346 IFSRMPKLESIVFEEG 361 (446)
Q Consensus 346 ll~~~p~L~~L~i~~~ 361 (446)
+...|++|+.|++..+
T Consensus 289 ~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGN 304 (768)
T ss_dssp SCTTCTTCSEEECCSS
T ss_pred HHhhcCcCCEEECcCC
Confidence 1223566777776653
No 39
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.04 E-value=6.2e-13 Score=130.80 Aligned_cols=235 Identities=13% Similarity=0.059 Sum_probs=138.8
Q ss_pred CceEEEEEecCCcc---ccCCCcccccCcccEEEecceecccC-C-C-----ccCCCCccEEEeeeEEeccc---hHHHH
Q 013263 117 NVREIEISLNDDEC---IELPHCIYTCKTLEVLKLDMNFFIKT-P-P-----TIFFPSAKILHVILNTIDNN---FSDWL 183 (446)
Q Consensus 117 ~l~~L~l~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~~~~~-~-~-----~~~l~~L~~L~L~~~~~~~~---~l~~l 183 (446)
++++|+++.+.... ..++..+..+++|++|++++|.+... + . ....++|++|+|+++.+.+. .+...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 58888887654211 24566666788899999888876531 0 0 11356788899888887743 34556
Q ss_pred hccCCCcceEEEEeeEeCCCCceEEE------eccCcceEEEeeccCccccc-CceEEEEecccceeEEeeccCCcce--
Q 013263 184 FSKCPALEDLSIKGYIYGTDSVTLNI------PSLTLKRLRLELEAPEEDYI-TKYKVIIRAPNLEQLYIRDHGPGLY-- 254 (446)
Q Consensus 184 l~~cp~Le~L~L~~~~~~~~~~~~~i------~~~~L~~L~i~~~~~~~~~~-~~~~~~~~~p~L~~L~l~~~~~~~~-- 254 (446)
+..|++|++|.+.+|.+.+. ....+ ..++|++|++.+|....... .........++|++|++.++.....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEA-GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHH-HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCCcchH-HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 67788999998888753221 11111 13488888888886542100 0011112458888888887754321
Q ss_pred ------EEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCC-CCCCcc
Q 013263 255 ------VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSF-PTFPFL 327 (446)
Q Consensus 255 ------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~-~~~~~L 327 (446)
....+++|+.+++..+.- . ......+...+..++++++|.++++.+..... ... ...+ ...++|
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l-~------~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~l-~~~l~~~~~~L 315 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGI-T------AKGCGDLCRVLRAKESLKELSLAGNELGDEGA-RLL-CETLLEPGCQL 315 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCC-C------HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-HHH-HHHHTSTTCCC
T ss_pred HHHHHHHhcCCCCceEEECcCCCC-C------HHHHHHHHHHHhhCCCcceEECCCCCCchHHH-HHH-HHHhccCCccc
Confidence 122467888887765521 0 12223355667778888888888776532110 000 0000 123477
Q ss_pred ceEEEEeccc--ccHHHHHHHHhhCCCCceEEEecc
Q 013263 328 NRLEVEGVGA--CGWLSLAHIFSRMPKLESIVFEEG 361 (446)
Q Consensus 328 ~~L~L~~~~~--~~~~~l~~ll~~~p~L~~L~i~~~ 361 (446)
+.|+++.+.- .....+...+..+|+|+.|+++.+
T Consensus 316 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 8887776643 123446667777888888888764
No 40
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.04 E-value=5.9e-11 Score=110.09 Aligned_cols=187 Identities=12% Similarity=0.119 Sum_probs=112.2
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++++|++..+.. ..+| .+..+++|++|++++|.+...+....+++|++|+|+++.+..- . .+..+++|+.|.+
T Consensus 41 ~~L~~L~l~~~~i--~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCc--cCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEEC
Confidence 3788888865542 3344 4667888999999888887765577888899999988887732 1 3667888888888
Q ss_pred EeeEeCCCCceEEEe-ccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeee
Q 013263 196 KGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECI 274 (446)
Q Consensus 196 ~~~~~~~~~~~~~i~-~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~ 274 (446)
.+|...++ .. +. .++|+.|.+..|...+.. . ....++|+.|++.++......
T Consensus 115 ~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~~----~-l~~l~~L~~L~l~~n~l~~~~------------------- 167 (308)
T 1h6u_A 115 TSTQITDV-TP--LAGLSNLQVLYLDLNQITNIS----P-LAGLTNLQYLSIGNAQVSDLT------------------- 167 (308)
T ss_dssp TTSCCCCC-GG--GTTCTTCCEEECCSSCCCCCG----G-GGGCTTCCEEECCSSCCCCCG-------------------
T ss_pred CCCCCCCc-hh--hcCCCCCCEEECCCCccCcCc----c-ccCCCCccEEEccCCcCCCCh-------------------
Confidence 88775554 32 22 377888888777654220 0 113456666666554332211
Q ss_pred cCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCc
Q 013263 275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLE 354 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~ 354 (446)
. +..+++++.|.++.+.+..+. .+..+++|++|+++.+.-..... +..+|+|+
T Consensus 168 --------------~-l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~ 220 (308)
T 1h6u_A 168 --------------P-LANLSKLTTLKADDNKISDIS--------PLASLPNLIEVHLKNNQISDVSP----LANTSNLF 220 (308)
T ss_dssp --------------G-GTTCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECTTSCCCBCGG----GTTCTTCC
T ss_pred --------------h-hcCCCCCCEEECCCCccCcCh--------hhcCCCCCCEEEccCCccCcccc----ccCCCCCC
Confidence 0 345556666666655443222 13345556666665543212111 45666666
Q ss_pred eEEEeccc
Q 013263 355 SIVFEEGV 362 (446)
Q Consensus 355 ~L~i~~~~ 362 (446)
.|+++.++
T Consensus 221 ~L~l~~N~ 228 (308)
T 1h6u_A 221 IVTLTNQT 228 (308)
T ss_dssp EEEEEEEE
T ss_pred EEEccCCe
Confidence 66666643
No 41
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.03 E-value=5.1e-11 Score=121.85 Aligned_cols=221 Identities=11% Similarity=0.022 Sum_probs=142.7
Q ss_pred CCceEEEEEecCCcccc-----------------CCCccc--ccCcccEEEecceeccc-CC-CccCCCCccEEEeeeEE
Q 013263 116 RNVREIEISLNDDECIE-----------------LPHCIY--TCKTLEVLKLDMNFFIK-TP-PTIFFPSAKILHVILNT 174 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~-----------------lp~~l~--~~~~L~~L~L~~~~~~~-~~-~~~~l~~L~~L~L~~~~ 174 (446)
.++++|+++.+.. ... +|..+. ++++|++|+|.+|.+.. .| .+..+++|++|+|+++.
T Consensus 206 ~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 206 TKLRQFYMGNSPF-VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp TTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred cCCCEEECcCCcc-ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 5899999987763 222 899998 99999999999997654 23 45689999999999998
Q ss_pred -eccchHHHHh------ccCCCcceEEEEeeEeCCCCceE-EE-eccCcceEEEeeccCcccccCceEEEEecccceeEE
Q 013263 175 -IDNNFSDWLF------SKCPALEDLSIKGYIYGTDSVTL-NI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLY 245 (446)
Q Consensus 175 -~~~~~l~~ll------~~cp~Le~L~L~~~~~~~~~~~~-~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~ 245 (446)
+....+..-+ ..+++|+.|.+.+|.+..+ ... .+ ..++|+.|++..|...+. .. .....++|++|+
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~---ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLEGK---LP-AFGSEIKLASLN 359 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC-CCHHHHTTCTTCCEEECCSCCCEEE---CC-CCEEEEEESEEE
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCcc-CchhhhccCCCCCEEeCcCCcCccc---hh-hhCCCCCCCEEE
Confidence 6531333333 3469999999999865533 110 12 247899999999876522 11 223567899999
Q ss_pred eeccCCcce--EEeCCCC-ceEEEEEEeeeeecCCCCchhhHHHHHHHHhc--CCCeeEEEEeCCccccccccccccCCC
Q 013263 246 IRDHGPGLY--VVHELHS-LTKAVVDYGIECILDYDSPEDVAQAVVDMLRD--IKNIKSLSLSSGTMFALDRLDYANDHS 320 (446)
Q Consensus 246 l~~~~~~~~--~~~~~~~-L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~l~~L~L~~~~~~~~~~~~~~~~~~ 320 (446)
+.++..... .+.++++ |+.+++....-.. +...+.. +++++.|.++.+.+.... +..
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~------------lp~~~~~~~l~~L~~L~Ls~N~l~~~~------p~~ 421 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKY------------IPNIFDAKSVSVMSAIDFSYNEIGSVD------GKN 421 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCSS------------CCSCCCTTCSSCEEEEECCSSCTTTTT------TCS
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCcc------------cchhhhhcccCccCEEECcCCcCCCcc------hhh
Confidence 887654322 1455677 8888776543110 1111222 347888888887664321 122
Q ss_pred CC-------CCCccceEEEEecccccHHHHHHHHhhCCCCceEEEeccc
Q 013263 321 FP-------TFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 321 ~~-------~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 362 (446)
++ .+.+|+.|+++.+.-.. .-..++..+++|+.|+++.+.
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSC
T ss_pred hcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCCC
Confidence 22 44578888887765321 112456678888888887754
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.03 E-value=1.8e-11 Score=114.14 Aligned_cols=231 Identities=9% Similarity=0.061 Sum_probs=109.4
Q ss_pred cCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCcceE
Q 013263 140 CKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRL 217 (446)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~L 217 (446)
+++|++|+|+++.+...+ .+..+++|++|+|+++.+.... . +..+++|+.|.+.+|.+.++ . ..++|+.|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~l~~l----~-~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYVQEL----L-VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSEEEEE----E-ECTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCccccc----c-CCCCcCEE
Confidence 344555555554444322 1234455555555554443100 0 34455555555554432221 1 12455555
Q ss_pred EEeeccCcccccCceEEEEecccceeEEeeccCCcce---EEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcC
Q 013263 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDI 294 (446)
Q Consensus 218 ~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 294 (446)
.+..|..... .....++|++|.+.++..... .+..+++|+.+++....-.. . ....+...+
T Consensus 105 ~l~~n~l~~~------~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~----~~~~~~~~l 168 (317)
T 3o53_A 105 HAANNNISRV------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------V----NFAELAASS 168 (317)
T ss_dssp ECCSSCCSEE------EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE------E----EGGGGGGGT
T ss_pred ECCCCccCCc------CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc------c----cHHHHhhcc
Confidence 5555443311 111235555555555443322 23344555555554321100 0 011233467
Q ss_pred CCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccCCCCCCCccccc
Q 013263 295 KNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVDFEWPEPSLALG 374 (446)
Q Consensus 295 ~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~ 374 (446)
++++.|.++.+.+..+. ....+++|+.|+++.+.-.. +..-+..+++|+.|+++.+. +...+.
T Consensus 169 ~~L~~L~L~~N~l~~~~--------~~~~l~~L~~L~Ls~N~l~~---l~~~~~~l~~L~~L~L~~N~------l~~l~~ 231 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVK--------GQVVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNK------LVLIEK 231 (317)
T ss_dssp TTCCEEECTTSCCCEEE--------CCCCCTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSC------CCEECT
T ss_pred CcCCEEECCCCcCcccc--------cccccccCCEEECCCCcCCc---chhhhcccCcccEEECcCCc------ccchhh
Confidence 88888888888765443 11246788888888765321 11125678899999997743 111111
Q ss_pred --ccccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEE
Q 013263 375 --CLLSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIG 414 (446)
Q Consensus 375 --~~~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~ 414 (446)
...++|+.+.+.+-.-.. ......+...+.|+.+.+.
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~---~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHC---GTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBH---HHHHHHHHTCHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccC---cCHHHHHhccccceEEECC
Confidence 223578887776432221 1222333445555554443
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.02 E-value=7.4e-11 Score=115.27 Aligned_cols=240 Identities=18% Similarity=0.098 Sum_probs=123.7
Q ss_pred cccCCCcccccCcccEEEecceecccC--CCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceE
Q 013263 130 CIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL 207 (446)
Q Consensus 130 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~ 207 (446)
...+|..+. +++++|+|.++.+... ..+..+++|++|+|+++.+..-. ...+.++++|+.|.|.+|.+..+ ..-
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~-~~~ 130 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTI-PNG 130 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSC-CTT
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCee-CHh
Confidence 344555443 4666666666665443 23446666666766666655111 12345666677776666653332 111
Q ss_pred EE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce----EEeCCCCceEEEEEEeeeeecCCCCchh
Q 013263 208 NI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY----VVHELHSLTKAVVDYGIECILDYDSPED 282 (446)
Q Consensus 208 ~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~~~~~ 282 (446)
.+ ..++|+.|++.+|....... ......++|++|++.++..... .+.++++|+.+++..+.-. . .
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----~--~- 200 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPS---YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----E--I- 200 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECT---TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----S--C-
T ss_pred HhhccccCceeeCCCCcccccCH---HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----c--c-
Confidence 11 23566666666664431100 0011346666666665322111 2345666666666544210 0 0
Q ss_pred hHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEeccc
Q 013263 283 VAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 283 ~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 362 (446)
.-+..+++|+.|.|+.+.+..+. ...+..+++|+.|++..+..... ....+..+++|+.|+|+.+.
T Consensus 201 ------~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 201 ------PNLTPLIKLDELDLSGNHLSAIR------PGSFQGLMHLQKLWMIQSQIQVI--ERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp ------CCCTTCSSCCEEECTTSCCCEEC------TTTTTTCTTCCEEECTTCCCCEE--CTTSSTTCTTCCEEECTTSC
T ss_pred ------cccCCCcccCEEECCCCccCccC------hhhhccCccCCEEECCCCceeEE--ChhhhcCCCCCCEEECCCCC
Confidence 01456778888888877665443 34455677788887765532111 11234567888888887732
Q ss_pred CCCCCCCccccc---ccccceeEEEEE--EeeCchhHHHHHHHHHh
Q 013263 363 DFEWPEPSLALG---CLLSHVKIIVIG--EFEGEENEMKLIKYLLK 403 (446)
Q Consensus 363 ~~~~~~~~~~~~---~~~~~L~~v~i~--~~~g~~~~~~~~~~ll~ 403 (446)
+...+. ...++|+.+.+. .+.+......+..++-+
T Consensus 267 ------l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~ 306 (440)
T 3zyj_A 267 ------LTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKD 306 (440)
T ss_dssp ------CCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHT
T ss_pred ------CCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHh
Confidence 111111 123677777776 35555444455555543
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.02 E-value=1.8e-10 Score=121.74 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=56.8
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccC-C-C--ccCCCCccEEEeeeEEeccchHHHHhccCCCcc
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT-P-P--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALE 191 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~-~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 191 (446)
.+++.|+|+.+.. ....|..+.++++|++|+|.+|.+... + . +..+++|++|+|+++.+........+.++++|+
T Consensus 73 ~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 73 PNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp TTCCEEECTTCCC-CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCEEECCCCcC-cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 3677787765542 233466667788888888888877541 2 2 557788888888888776333334467788888
Q ss_pred eEEEEeeEe
Q 013263 192 DLSIKGYIY 200 (446)
Q Consensus 192 ~L~L~~~~~ 200 (446)
.|.|.+|.+
T Consensus 152 ~L~Ls~N~i 160 (844)
T 3j0a_A 152 SIDFSSNQI 160 (844)
T ss_dssp EEEEESSCC
T ss_pred EEECCCCcC
Confidence 888887754
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.01 E-value=1e-10 Score=114.59 Aligned_cols=146 Identities=14% Similarity=0.003 Sum_probs=109.9
Q ss_pred cccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEe-ccCc
Q 013263 136 CIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTL 214 (446)
Q Consensus 136 ~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~-~~~L 214 (446)
.+..+++|++|++.++.+...|....+++|++|+|+++.+..- . +..+++|+.|.+.+|.+.++ . +. .++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL-D---VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC-C---CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee-e---cCCCCcC
Confidence 4567899999999999988877788999999999999998842 2 67899999999999876655 2 43 4899
Q ss_pred ceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcC
Q 013263 215 KRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDI 294 (446)
Q Consensus 215 ~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 294 (446)
++|+++.|...+. . ....++|++|++.++......+.++++|+.+++..+...... -+..+
T Consensus 109 ~~L~L~~N~l~~l-----~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~-------------~~~~l 169 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-----D-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL-------------DVTPQ 169 (457)
T ss_dssp CEEECCSSCCSCC-----C-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC-------------CCTTC
T ss_pred CEEECCCCcCCee-----c-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc-------------ccccC
Confidence 9999999976532 1 235688999999888776666777888888877655321100 13456
Q ss_pred CCeeEEEEeCCccc
Q 013263 295 KNIKSLSLSSGTMF 308 (446)
Q Consensus 295 ~~l~~L~L~~~~~~ 308 (446)
++++.|.++.+.+.
T Consensus 170 ~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 170 TQLTTLDCSFNKIT 183 (457)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CcCCEEECCCCccc
Confidence 67777777766544
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.01 E-value=6.6e-11 Score=110.95 Aligned_cols=269 Identities=13% Similarity=0.038 Sum_probs=167.6
Q ss_pred CCceEEEEEecCCccccCCC-cccccCcccEEEecceecccC-C-CccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
..++.|+++.+.. ..++. .+..+++|++|+|.+|.+... | .+..+++|++|+|+++.+.. +.. ..+++|++
T Consensus 52 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTCCE
T ss_pred CCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccccE
Confidence 4788898876653 34554 566799999999999988764 3 45689999999999998771 111 12489999
Q ss_pred EEEEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEee
Q 013263 193 LSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGI 271 (446)
Q Consensus 193 L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~ 271 (446)
|.+.+|...+. ..-.+ ..++|+.|++..|......... ......++|++|.+.++.....+..-.++|+.+++....
T Consensus 126 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~ 203 (330)
T 1xku_A 126 LRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203 (330)
T ss_dssp EECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSC
T ss_pred EECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCccccCCccccccCCEEECCCCc
Confidence 99999865443 21112 2489999999998764210000 111246899999999877655443344789988876542
Q ss_pred eeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCC
Q 013263 272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMP 351 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p 351 (446)
-.. .....+..+++++.|.++++.+.... ...+..+++|+.|+++.+.-. .++..+..+|
T Consensus 204 l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~ 263 (330)
T 1xku_A 204 ITK-----------VDAASLKGLNNLAKLGLSFNSISAVD------NGSLANTPHLRELHLNNNKLV---KVPGGLADHK 263 (330)
T ss_dssp CCE-----------ECTGGGTTCTTCCEEECCSSCCCEEC------TTTGGGSTTCCEEECCSSCCS---SCCTTTTTCS
T ss_pred CCc-----------cCHHHhcCCCCCCEEECCCCcCceeC------hhhccCCCCCCEEECCCCcCc---cCChhhccCC
Confidence 110 01134678899999999998776443 234556789999999887532 2333467899
Q ss_pred CCceEEEecccCCCC--CCCcc-cccccccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEE
Q 013263 352 KLESIVFEEGVDFEW--PEPSL-ALGCLLSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIG 414 (446)
Q Consensus 352 ~L~~L~i~~~~~~~~--~~~~~-~~~~~~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~ 414 (446)
+|+.|++..+.-... ..... ........|+.+.+.+-.-... .....-+.....|+.+.+.
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~--~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW--EIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG--GSCGGGGTTCCCGGGEEC-
T ss_pred CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc--ccCccccccccceeEEEec
Confidence 999999988541110 00000 0111235677777653211110 1111234556677776654
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=7e-11 Score=123.72 Aligned_cols=227 Identities=10% Similarity=0.040 Sum_probs=141.7
Q ss_pred CCceEEEEEecCCccccCCC--cccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCC-cce
Q 013263 116 RNVREIEISLNDDECIELPH--CIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPA-LED 192 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le~ 192 (446)
+++++|+++.+.. ..+|. .+..+++|++|+|++|.+...|.+..+++|++|+|+++.+. .+..-+.++++ |+.
T Consensus 548 ~~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 548 PKIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TTCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred CCccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence 3788888887764 37888 78889999999999988877677778899999999998877 33334677888 999
Q ss_pred EEEEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCce--EEEEecccceeEEeeccCCcceE---EeCCCCceEEE
Q 013263 193 LSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKY--KVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAV 266 (446)
Q Consensus 193 L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~--~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~ 266 (446)
|.|.+|.+..+...+.. ..++|+.|+++.|...+...... ......++|+.|++.++.....+ +..+++|+.++
T Consensus 624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703 (876)
T ss_dssp EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEE
T ss_pred EECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEE
Confidence 99998875543111111 12458899998887643200000 00113457888888887665433 34678888888
Q ss_pred EEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCC--CCCccceEEEEecccccHHHHH
Q 013263 267 VDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFP--TFPFLNRLEVEGVGACGWLSLA 344 (446)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~l~ 344 (446)
+..+.-.. ... .........+..+++|+.|.|+.+.+..++ ..+. .+++|+.|+|+.+.-.. ++
T Consensus 704 Ls~N~L~~-ip~---~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-------~~l~~~~l~~L~~L~Ls~N~L~~---lp 769 (876)
T 4ecn_A 704 LSNNLMTS-IPE---NSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-------DDFRATTLPYLSNMDVSYNCFSS---FP 769 (876)
T ss_dssp CCSCCCSC-CCT---TSSSCTTSCCTTGGGCCEEECCSSCCCCCC-------GGGSTTTCTTCCEEECCSSCCSS---CC
T ss_pred CCCCcCCc-cCh---HHhccccccccccCCccEEECCCCCCccch-------HHhhhccCCCcCEEEeCCCCCCc---cc
Confidence 76543110 000 000000000123348888888887665433 2222 56788888887765322 34
Q ss_pred HHHhhCCCCceEEEec
Q 013263 345 HIFSRMPKLESIVFEE 360 (446)
Q Consensus 345 ~ll~~~p~L~~L~i~~ 360 (446)
.-+..+++|+.|+++.
T Consensus 770 ~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CGGGGCTTCCEEECCC
T ss_pred hhhhcCCCCCEEECCC
Confidence 4455788888888865
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.00 E-value=3.1e-11 Score=119.27 Aligned_cols=206 Identities=9% Similarity=0.057 Sum_probs=110.8
Q ss_pred cCcccEEEecceecccCC--CccCCCCccEEEeeeEEec-cchHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCcce
Q 013263 140 CKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTID-NNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (446)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~ 216 (446)
+++|++|+|+++.+...+ .+..+++|++|+|+++.+. ... +.++++|+.|+|.+|.+.++ . ..++|+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l----~-~~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQEL----L-VGPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEEEEE----E-ECTTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcCCCC----C-CCCCcCE
Confidence 346666666666555432 2345666666666666554 111 45566666666666543322 1 2256666
Q ss_pred EEEeeccCcccccCceEEEEecccceeEEeeccCCcce---EEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhc
Q 013263 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD 293 (446)
Q Consensus 217 L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (446)
|++++|...+. .....|+|+.|.+.++..... .+.++++|+.++++...-.. .....+...
T Consensus 104 L~L~~N~l~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------~~~~~l~~~ 167 (487)
T 3oja_A 104 LHAANNNISRV------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----------VNFAELAAS 167 (487)
T ss_dssp EECCSSCCCCE------EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE----------EEGGGGGGG
T ss_pred EECcCCcCCCC------CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC----------cChHHHhhh
Confidence 66666654421 112346666666666544322 23456666666664432100 001122346
Q ss_pred CCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccCCCCCCCcccc
Q 013263 294 IKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVDFEWPEPSLAL 373 (446)
Q Consensus 294 l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~ 373 (446)
+++++.|.|+++.+..+. ....+++|+.|+|+.+.-.. ++.-+..+|+|+.|+++.+. +...+
T Consensus 168 l~~L~~L~Ls~N~l~~~~--------~~~~l~~L~~L~Ls~N~l~~---~~~~~~~l~~L~~L~Ls~N~------l~~lp 230 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVK--------GQVVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNK------LVLIE 230 (487)
T ss_dssp TTTCCEEECTTSCCCEEE--------CCCCCTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSC------CCEEC
T ss_pred CCcccEEecCCCcccccc--------ccccCCCCCEEECCCCCCCC---CCHhHcCCCCccEEEecCCc------Ccccc
Confidence 788888888888765432 11246788888888765321 11125677888888887733 21122
Q ss_pred cc--cccceeEEEEEE
Q 013263 374 GC--LLSHVKIIVIGE 387 (446)
Q Consensus 374 ~~--~~~~L~~v~i~~ 387 (446)
.. ..++|+.+.+.+
T Consensus 231 ~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 231 KALRFSQNLEHFDLRG 246 (487)
T ss_dssp TTCCCCTTCCEEECTT
T ss_pred hhhccCCCCCEEEcCC
Confidence 11 235677777664
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.00 E-value=1.9e-11 Score=123.47 Aligned_cols=258 Identities=15% Similarity=0.114 Sum_probs=172.6
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++++|++..+. ...+|..+..+ +|++|++.+|.+...|. ..+++|++|++.++.+.... . ...+|+|+.|.+
T Consensus 282 ~~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~-~--~~~~~~L~~L~l 354 (570)
T 2z63_A 282 TNVSSFSLVSVT--IERVKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAF-S--EVDLPSLEFLDL 354 (570)
T ss_dssp TTCSEEEEESCE--ECSCCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBC-C--CCBCTTCCEEEC
T ss_pred CcccEEEecCcc--chhhhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCcccccc-c--cccCCCCCEEeC
Confidence 589999998765 34688888888 99999999999886444 68999999999999876221 1 168999999999
Q ss_pred EeeEeCCCCceEE--E-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcc----eEEeCCCCceEEEEE
Q 013263 196 KGYIYGTDSVTLN--I-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL----YVVHELHSLTKAVVD 268 (446)
Q Consensus 196 ~~~~~~~~~~~~~--i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~~~l~ 268 (446)
.+|...+. .... + ..++|+.|++..|...+. .......++|++|++.++.... ..+.++++|+.+++.
T Consensus 355 ~~n~l~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 355 SRNGLSFK-GCCSQSDFGTTSLKYLDLSFNGVITM----SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp CSSCCBEE-EEEEHHHHTCSCCCEEECCSCSEEEE----EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred cCCccCcc-ccccccccccCccCEEECCCCccccc----cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 98754322 1111 1 248999999999865421 1224567999999998864432 235678999999887
Q ss_pred EeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHh
Q 013263 269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS 348 (446)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~ 348 (446)
.+.-.. .....+..+++++.|.++++.+... .....+..+++|+.|+++.+.-.. ..+..+.
T Consensus 430 ~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~-----~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~ 491 (570)
T 2z63_A 430 HTHTRV-----------AFNGIFNGLSSLEVLKMAGNSFQEN-----FLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFN 491 (570)
T ss_dssp TSCCEE-----------CCTTTTTTCTTCCEEECTTCEEGGG-----EECSCCTTCTTCCEEECTTSCCCE--ECTTTTT
T ss_pred CCcccc-----------cchhhhhcCCcCcEEECcCCcCccc-----cchhhhhcccCCCEEECCCCcccc--CChhhhh
Confidence 653211 0113467899999999998876411 012445678899999998765311 1133457
Q ss_pred hCCCCceEEEecccCCCCCCCcccccccccceeEEEEEE--eeCchhHHHHH-HHHHhhcc
Q 013263 349 RMPKLESIVFEEGVDFEWPEPSLALGCLLSHVKIIVIGE--FEGEENEMKLI-KYLLKNGE 406 (446)
Q Consensus 349 ~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~L~~v~i~~--~~g~~~~~~~~-~~ll~~a~ 406 (446)
.+|+|+.|+++.+.-. ......-...++|+.+.+.+ +.|......+. .++-++..
T Consensus 492 ~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~ 549 (570)
T 2z63_A 492 SLSSLQVLNMASNQLK---SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 549 (570)
T ss_dssp TCTTCCEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGG
T ss_pred cccCCCEEeCCCCcCC---CCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccc
Confidence 8999999999884311 11000012246899998884 55655555666 66554433
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.00 E-value=4.2e-11 Score=120.96 Aligned_cols=250 Identities=12% Similarity=0.047 Sum_probs=165.1
Q ss_pred cCCCcccccCcccEEEecceecccCCC-ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEe
Q 013263 132 ELPHCIYTCKTLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP 210 (446)
Q Consensus 132 ~lp~~l~~~~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~ 210 (446)
..|..+..+++|++|++.++.+...|. ...+ +|++|++.++.+. .+. ...+++|+.|.+.+|...+. ... ..
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~--~l~--~~~l~~L~~L~l~~n~~~~~-~~~-~~ 345 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG--QFP--TLKLKSLKRLTFTSNKGGNA-FSE-VD 345 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS--SCC--BCBCSSCCEEEEESCBSCCB-CCC-CB
T ss_pred hchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc--ccC--cccccccCEEeCcCCccccc-ccc-cc
Confidence 455666678999999999998776553 3455 9999999999887 111 14789999999999864433 221 34
Q ss_pred ccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceE--EeCCCCceEEEEEEeeeeecCCCCchhhHHHHH
Q 013263 211 SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV--VHELHSLTKAVVDYGIECILDYDSPEDVAQAVV 288 (446)
Q Consensus 211 ~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (446)
.++|+.|+++.|....... ........++|++|++.++...... +.++++|+.+++..+.-..... .
T Consensus 346 ~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~ 414 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGC-CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE----------F 414 (570)
T ss_dssp CTTCCEEECCSSCCBEEEE-EEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT----------S
T ss_pred CCCCCEEeCcCCccCcccc-ccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc----------h
Confidence 6899999999886542100 0001124689999999987654332 6789999999887643211000 0
Q ss_pred HHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccCCCCCC
Q 013263 289 DMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVDFEWPE 368 (446)
Q Consensus 289 ~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~ 368 (446)
..+..+++++.|.++.+.+.... ...+..+++|+.|++..+.. ....++..+..+|+|+.|++..+.
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l-~~~~~p~~~~~l~~L~~L~l~~n~------ 481 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAF------NGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQ------ 481 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECC------TTTTTTCTTCCEEECTTCEE-GGGEECSCCTTCTTCCEEECTTSC------
T ss_pred hhhhcCCCCCEEeCcCCcccccc------hhhhhcCCcCcEEECcCCcC-ccccchhhhhcccCCCEEECCCCc------
Confidence 23567899999999988765432 34456788999999987642 111233556789999999998843
Q ss_pred Cccc-cc--ccccceeEEEEEEe--eCchhHHHHHHHHHhhccccCeEEEEcccc
Q 013263 369 PSLA-LG--CLLSHVKIIVIGEF--EGEENEMKLIKYLLKNGEVLNAMIIGGEQF 418 (446)
Q Consensus 369 ~~~~-~~--~~~~~L~~v~i~~~--~g~~~~~~~~~~ll~~a~~L~~l~i~~~~~ 418 (446)
.... +. ...++|+.+.+.+. .+.. ...+.+.++|+.+.+...+-
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVP------DGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSSCB
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCC------HHHhhcccCCcEEEecCCcc
Confidence 1111 11 23468999988743 2221 22347789999999987664
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.99 E-value=1e-09 Score=110.28 Aligned_cols=243 Identities=11% Similarity=0.032 Sum_probs=140.8
Q ss_pred cccCCCcccccCcccEEEecceecccC--CCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceE
Q 013263 130 CIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL 207 (446)
Q Consensus 130 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~ 207 (446)
...+|..++ ++|++|+|+++.+... ..+..+++|++|+|+++.+.. .....+.++++|+.|++.+|.+.+. ..-
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~ 92 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSL-SSS 92 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSC-CHH
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCcc-CHH
Confidence 456676554 7899999999987654 245688999999999988772 1123467889999999998865544 211
Q ss_pred EEe-ccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHH
Q 013263 208 NIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQA 286 (446)
Q Consensus 208 ~i~-~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~ 286 (446)
.+. .++|++|++++|..... ... ..+.++++|+.+++..........
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~--~~~---------------------~~~~~l~~L~~L~L~~n~~~~~~~--------- 140 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTL--GVT---------------------SLFPNLTNLQTLRIGNVETFSEIR--------- 140 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSS--CSS---------------------CSCTTCTTCCEEEEEESSSCCEEC---------
T ss_pred HhccCCCCcEEECCCCccccc--chh---------------------hhhhccCCccEEECCCCccccccC---------
Confidence 122 36777777776654311 000 113344555555554432110000
Q ss_pred HHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccCCCC
Q 013263 287 VVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVDFEW 366 (446)
Q Consensus 287 ~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~ 366 (446)
...+..+++++.|.++.+.+.... ...+..+++|++|++..+..... -..++..+++|+.|++..+.-...
T Consensus 141 -~~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 141 -RIDFAGLTSLNELEIKALSLRNYQ------SQSLKSIRDIHHLTLHLSESAFL--LEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp -TTTTTTCCEEEEEEEEETTCCEEC------TTTTTTCSEEEEEEEECSBSTTH--HHHHHHSTTTBSEEEEESCBCTTC
T ss_pred -HhhhhcccccCeeeccCCcccccC------hhhhhccccCceEecccCccccc--chhhHhhcccccEEEccCCccccc
Confidence 012567888999999887665322 34456678889999887654222 223456789999999988541111
Q ss_pred CCCcccccccccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEEccc
Q 013263 367 PEPSLALGCLLSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIGGEQ 417 (446)
Q Consensus 367 ~~~~~~~~~~~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~~~~ 417 (446)
............+|+.+.+.+..-......-+...+...+.|+.+.+....
T Consensus 212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 000000112346788888774332222222222334566777777776544
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.99 E-value=4.4e-11 Score=121.80 Aligned_cols=154 Identities=12% Similarity=-0.006 Sum_probs=98.4
Q ss_pred ccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-eccCcc
Q 013263 137 IYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLK 215 (446)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~L~ 215 (446)
+..+++|++|++.++.+...+....+++|++|+++++.+. .+..+ .+++|+.|.+.+|. .. ....+ ..++|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~--~~-~~~~~~~l~~L~ 353 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNK--GS-ISFKKVALPSLS 353 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCS--SC-EECCCCCCTTCC
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCc--Cc-cchhhccCCCCC
Confidence 5568999999999998887777778899999999999885 23333 89999999999974 22 22222 358999
Q ss_pred eEEEeeccCcccccCceEEEEecccceeEEeeccCCcce--EEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhc
Q 013263 216 RLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY--VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD 293 (446)
Q Consensus 216 ~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (446)
.|++++|...+... ........++|++|++.++..... .+.++++|+.+++..+.-..... ...+..
T Consensus 354 ~L~ls~n~l~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~~ 422 (606)
T 3vq2_A 354 YLDLSRNALSFSGC-CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE----------FSAFLS 422 (606)
T ss_dssp EEECCSSCEEEEEE-CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT----------TTTTTT
T ss_pred EEECcCCccCCCcc-hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC----------hhhhhc
Confidence 99999886432100 000112457888888877654332 24566777777776543211000 012445
Q ss_pred CCCeeEEEEeCCccc
Q 013263 294 IKNIKSLSLSSGTMF 308 (446)
Q Consensus 294 l~~l~~L~L~~~~~~ 308 (446)
+++++.|.++.+.+.
T Consensus 423 l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 423 LEKLLYLDISYTNTK 437 (606)
T ss_dssp CTTCCEEECTTSCCE
T ss_pred cccCCEEECcCCCCC
Confidence 666666666665443
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.99 E-value=8.2e-11 Score=109.66 Aligned_cols=226 Identities=15% Similarity=0.097 Sum_probs=112.4
Q ss_pred ccHHHHHHHHHh--CCceEEEEEecCCccccCC-CcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchH
Q 013263 104 SRLKLWVSFATM--RNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFS 180 (446)
Q Consensus 104 ~~~~~wi~~~~~--~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l 180 (446)
..+...+..... .++++|+++.+.. ..++ ..+..+++|++|+|++|.+...+.+..+++|++|+|+++.+..-
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l-- 95 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL-- 95 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE--
T ss_pred cchhhhHHHHhccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccc--
Confidence 334444433322 3577777765542 2233 34555777777777777665444466777777777777776621
Q ss_pred HHHhccCCCcceEEEEeeEeCCCCceEEEeccCcceEEEeeccCcccccCc-----------------eEEE-----Eec
Q 013263 181 DWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITK-----------------YKVI-----IRA 238 (446)
Q Consensus 181 ~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~-----------------~~~~-----~~~ 238 (446)
..+++|+.|.+.+|.+.+. ..-..++|+.|.++.|......... ..+. -..
T Consensus 96 ----~~~~~L~~L~l~~n~l~~~---~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 168 (317)
T 3o53_A 96 ----LVGPSIETLHAANNNISRV---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (317)
T ss_dssp ----EECTTCCEEECCSSCCSEE---EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred ----cCCCCcCEEECCCCccCCc---CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence 1346666666666543221 1111345555555555433210000 0000 012
Q ss_pred ccceeEEeeccCCcceE-EeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCcccccccccccc
Q 013263 239 PNLEQLYIRDHGPGLYV-VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYAN 317 (446)
Q Consensus 239 p~L~~L~l~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~ 317 (446)
++|++|++.++...... ...+++|+.+++....-.. +...+..+++++.|.++.+.+..++
T Consensus 169 ~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~------------l~~~~~~l~~L~~L~L~~N~l~~l~------ 230 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF------------MGPEFQSAAGVTWISLRNNKLVLIE------ 230 (317)
T ss_dssp TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE------------ECGGGGGGTTCSEEECTTSCCCEEC------
T ss_pred CcCCEEECCCCcCcccccccccccCCEEECCCCcCCc------------chhhhcccCcccEEECcCCcccchh------
Confidence 44555555544433221 1224555555544332100 0011445666666666666555332
Q ss_pred CCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEec
Q 013263 318 DHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEE 360 (446)
Q Consensus 318 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 360 (446)
..+..+++|+.|+++.+.. ....++.++..+|+|+.|.+..
T Consensus 231 -~~~~~l~~L~~L~l~~N~~-~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 231 -KALRFSQNLEHFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp -TTCCCCTTCCEEECTTCCC-BHHHHHHHHHTCHHHHHHHHHH
T ss_pred -hHhhcCCCCCEEEccCCCc-cCcCHHHHHhccccceEEECCC
Confidence 2234556667776665543 3235566666777777776654
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.98 E-value=6.7e-11 Score=116.89 Aligned_cols=212 Identities=14% Similarity=0.107 Sum_probs=103.4
Q ss_pred CceEEEEEecCCccccCC-CcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 117 NVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
++++|+|+.+.. ..++ ..+..+++|++|+|++|.+...+++..+++|++|+|+++.+..- ...|+|+.|.+
T Consensus 35 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l------~~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEE------EECTTCCEEEC
T ss_pred CccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCC------CCCCCcCEEEC
Confidence 566666665542 2232 34555677777777776665433455667777777776666511 12355666666
Q ss_pred EeeEeCCCCceEEEeccCcceEEEeeccCcccccC-c----------------eE-----EEEecccceeEEeeccCCcc
Q 013263 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYIT-K----------------YK-----VIIRAPNLEQLYIRDHGPGL 253 (446)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~-~----------------~~-----~~~~~p~L~~L~l~~~~~~~ 253 (446)
.+|.+.+. . .-..++|+.|.+++|...+.... . .. +.-..++|+.|++.++....
T Consensus 107 ~~N~l~~~-~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRV-S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCE-E--ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCC-C--ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 55543322 1 11224555555555543321000 0 00 00023455555555444332
Q ss_pred eE-EeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEE
Q 013263 254 YV-VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEV 332 (446)
Q Consensus 254 ~~-~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 332 (446)
.. ...+++|+.++++.+.-.. +..-+..+++++.|.++++.+..++ ..+..+++|+.|++
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~l~~------------~~~~~~~l~~L~~L~Ls~N~l~~lp-------~~l~~l~~L~~L~l 244 (487)
T 3oja_A 184 VKGQVVFAKLKTLDLSSNKLAF------------MGPEFQSAAGVTWISLRNNKLVLIE-------KALRFSQNLEHFDL 244 (487)
T ss_dssp EECCCCCTTCCEEECCSSCCCE------------ECGGGGGGTTCSEEECTTSCCCEEC-------TTCCCCTTCCEEEC
T ss_pred ccccccCCCCCEEECCCCCCCC------------CCHhHcCCCCccEEEecCCcCcccc-------hhhccCCCCCEEEc
Confidence 21 2234555555554332100 0011445666666666666554332 22344566777766
Q ss_pred EecccccHHHHHHHHhhCCCCceEEEe
Q 013263 333 EGVGACGWLSLAHIFSRMPKLESIVFE 359 (446)
Q Consensus 333 ~~~~~~~~~~l~~ll~~~p~L~~L~i~ 359 (446)
+.+.. ....++.++..+|.|+.|.+.
T Consensus 245 ~~N~l-~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 245 RGNGF-HCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCB-CHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCC-cCcchHHHHHhCCCCcEEecc
Confidence 65543 333556666677777766664
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.98 E-value=7.9e-11 Score=110.51 Aligned_cols=219 Identities=12% Similarity=0.080 Sum_probs=133.7
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++++|++..+.- ....|..+..+++|++|++.++.+...|... +++|++|+++++.+.. .-...+.++++|+.|.+
T Consensus 78 ~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 78 QHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp TTCCEEECCSSCC-CEECGGGSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSSCCCC-CCSGGGSSCSSCCEEEC
T ss_pred CCCcEEECCCCcc-CccCHhHhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCCccCc-cCHhHhCCCccCCEEEC
Confidence 4789998876653 2233556677899999999999887654433 3899999999988772 11234678899999999
Q ss_pred EeeEeCC--CCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceE---EeCCCCceEEEEEEe
Q 013263 196 KGYIYGT--DSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYG 270 (446)
Q Consensus 196 ~~~~~~~--~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~ 270 (446)
.+|.... . ....+...+|+.|+++.|........ ..++|++|++.++...... +.++++|+.+++...
T Consensus 155 ~~n~l~~~~~-~~~~~~~l~L~~L~l~~n~l~~l~~~------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 155 GGNPLENSGF-EPGAFDGLKLNYLRISEAKLTGIPKD------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp CSCCCBGGGS-CTTSSCSCCCSCCBCCSSBCSSCCSS------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred CCCccccCCC-CcccccCCccCEEECcCCCCCccCcc------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 8876431 1 11112223788888888865532111 1267888888876554432 556777777777654
Q ss_pred eeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEeccccc--HHHHHH--H
Q 013263 271 IECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACG--WLSLAH--I 346 (446)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~l~~--l 346 (446)
.-.. . ....+..+++++.|.++.+.+..++ ..+..+++|+.|+++.+.-.. ...+.. +
T Consensus 228 ~l~~-~----------~~~~~~~l~~L~~L~L~~N~l~~lp-------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 228 QIRM-I----------ENGSLSFLPTLRELHLDNNKLSRVP-------AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp CCCC-C----------CTTGGGGCTTCCEEECCSSCCCBCC-------TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred cCCc-C----------ChhHhhCCCCCCEEECCCCcCeecC-------hhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 2110 0 0123567788888888887766443 224566778888887653211 000000 0
Q ss_pred HhhCCCCceEEEeccc
Q 013263 347 FSRMPKLESIVFEEGV 362 (446)
Q Consensus 347 l~~~p~L~~L~i~~~~ 362 (446)
....+.|+.|.+.+.+
T Consensus 290 ~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNP 305 (332)
T ss_dssp CSSSCCBSEEECCSSS
T ss_pred ccccccccceEeecCc
Confidence 0124677888887743
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.98 E-value=5e-11 Score=121.11 Aligned_cols=253 Identities=13% Similarity=0.109 Sum_probs=146.5
Q ss_pred CCceEEEEEecCCccccCC-CcccccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 116 RNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
++++.|+++.+.. ..++ ..+..+++|++|+|++|.+...++ +..+++|++|+|+++.+. ..-..++.++++|+.
T Consensus 75 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 75 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCE
Confidence 4777887765542 2333 355667888888888877765432 357788888888887766 111233567788888
Q ss_pred EEEEeeEeCCCCceEEEe-ccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEee
Q 013263 193 LSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGI 271 (446)
Q Consensus 193 L~L~~~~~~~~~~~~~i~-~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~ 271 (446)
|.|.+|.+.+. ..-.+. .++|+.|++++|...+.. ....|+|+.|.+.++.... +...++|+.+++....
T Consensus 152 L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~------~~~l~~L~~L~l~~n~l~~--l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 152 LSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVD------LSLIPSLFHANVSYNLLST--LAIPIAVEELDASHNS 222 (597)
T ss_dssp EECCSSCCCBC-CTTTTTTCTTCCEEECTTSCCSBCC------GGGCTTCSEEECCSSCCSE--EECCTTCSEEECCSSC
T ss_pred EEeeCCcCCCC-ChhhhhcCCcCcEEECcCCCCCCcC------hhhhhhhhhhhcccCcccc--ccCCchhheeeccCCc
Confidence 88887754433 211122 367888888777654320 1134777777777765543 2345567776665432
Q ss_pred eeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCC
Q 013263 272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMP 351 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p 351 (446)
-..-+. ...++++.|.++++.+... ..+..+++|+.|+|+.+..... .+..+..++
T Consensus 223 l~~~~~--------------~~~~~L~~L~L~~n~l~~~--------~~l~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~ 278 (597)
T 3oja_B 223 INVVRG--------------PVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKI--MYHPFVKMQ 278 (597)
T ss_dssp CCEEEC--------------SCCSCCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEE--ESGGGTTCS
T ss_pred cccccc--------------ccCCCCCEEECCCCCCCCC--------hhhccCCCCCEEECCCCccCCC--CHHHhcCcc
Confidence 110000 1235788888887765421 2234677888888887643111 223456788
Q ss_pred CCceEEEecccCCCCCCCcccc--cccccceeEEEEEEee--CchhHHHHHHHHHhhccccCeEEEEccc
Q 013263 352 KLESIVFEEGVDFEWPEPSLAL--GCLLSHVKIIVIGEFE--GEENEMKLIKYLLKNGEVLNAMIIGGEQ 417 (446)
Q Consensus 352 ~L~~L~i~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~~~--g~~~~~~~~~~ll~~a~~L~~l~i~~~~ 417 (446)
+|+.|+++.+. ....+ ....++|+.+.+.+.. +.+.. +...++|+.+.+....
T Consensus 279 ~L~~L~Ls~N~------l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~-------~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 279 RLERLYISNNR------LVALNLYGQPIPTLKVLDLSHNHLLHVERN-------QPQFDRLENLYLDHNS 335 (597)
T ss_dssp SCCEEECTTSC------CCEEECSSSCCTTCCEEECCSSCCCCCGGG-------HHHHTTCSEEECCSSC
T ss_pred CCCEEECCCCC------CCCCCcccccCCCCcEEECCCCCCCccCcc-------cccCCCCCEEECCCCC
Confidence 99999997743 11111 1235689999887432 22211 1344666666665443
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.98 E-value=2.6e-10 Score=105.74 Aligned_cols=160 Identities=14% Similarity=0.094 Sum_probs=110.6
Q ss_pred CcceEEEEecccCCcccHHHHHHHHHhCCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEE
Q 013263 89 NINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKIL 168 (446)
Q Consensus 89 ~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L 168 (446)
.++.+.+....-.. +.. .....++++|+++.+.. ..++. +..+++|++|++++|.+...+....+++|++|
T Consensus 42 ~L~~L~l~~~~i~~---l~~---~~~l~~L~~L~L~~n~i--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 42 GITTLSAFGTGVTT---IEG---VQYLNNLIGLELKDNQI--TDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTL 112 (308)
T ss_dssp TCCEEECTTSCCCC---CTT---GGGCTTCCEEECCSSCC--CCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEE
T ss_pred CcCEEEeeCCCccC---chh---hhccCCCCEEEccCCcC--CCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEE
Confidence 46777665443111 111 12345899999987753 34444 67799999999999998887777889999999
Q ss_pred EeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEee
Q 013263 169 HVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIR 247 (446)
Q Consensus 169 ~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 247 (446)
+|+++.+.+- .. +..+++|+.|.+.+|...++ .. + ..++|+.|+++.|...... . ....++|+.|++.
T Consensus 113 ~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~~----~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 113 DLTSTQITDV--TP-LAGLSNLQVLYLDLNQITNI-SP--LAGLTNLQYLSIGNAQVSDLT----P-LANLSKLTTLKAD 181 (308)
T ss_dssp ECTTSCCCCC--GG-GTTCTTCCEEECCSSCCCCC-GG--GGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECC
T ss_pred ECCCCCCCCc--hh-hcCCCCCCEEECCCCccCcC-cc--ccCCCCccEEEccCCcCCCCh----h-hcCCCCCCEEECC
Confidence 9999998832 22 78899999999999876665 33 3 2489999999999765321 1 2345788888888
Q ss_pred ccCCcceE-EeCCCCceEEEEE
Q 013263 248 DHGPGLYV-VHELHSLTKAVVD 268 (446)
Q Consensus 248 ~~~~~~~~-~~~~~~L~~~~l~ 268 (446)
++...... +..+++|+.+++.
T Consensus 182 ~n~l~~~~~l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 182 DNKISDISPLASLPNLIEVHLK 203 (308)
T ss_dssp SSCCCCCGGGGGCTTCCEEECT
T ss_pred CCccCcChhhcCCCCCCEEEcc
Confidence 76553321 3444455554443
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.97 E-value=1.9e-10 Score=121.54 Aligned_cols=106 Identities=18% Similarity=0.120 Sum_probs=49.9
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccC--CCccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
.++++|+++.+.. ....|..+..+++|++|+|.+|.+... ..+.++++|++|+|+++.+.. .....+.++|+|+.|
T Consensus 266 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCC-CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC-CCSCSCSSCTTCCEE
T ss_pred CCccEEECCCCcc-cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc-cCHHHhcCCCCCCEE
Confidence 3566666644332 112233334456666666666655432 123455666666666665541 111224455566666
Q ss_pred EEEeeEeCCCCceEEEe-ccCcceEEEeeccC
Q 013263 194 SIKGYIYGTDSVTLNIP-SLTLKRLRLELEAP 224 (446)
Q Consensus 194 ~L~~~~~~~~~~~~~i~-~~~L~~L~i~~~~~ 224 (446)
.+.+|.+..+ ..-.+. .++|+.|++++|..
T Consensus 344 ~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 344 DLQKNHIAII-QDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp ECCSCCCCCC-CSSCSCSCCCCCEEEEETCCS
T ss_pred ECCCCCCCcc-ChhhhcCCCCCCEEECCCCCC
Confidence 6655543332 111111 35555555555543
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.96 E-value=8.6e-12 Score=116.07 Aligned_cols=244 Identities=12% Similarity=0.098 Sum_probs=155.3
Q ss_pred CCcceEEEEecccCCcccHHHHHHHHHhCCceEEEEEe-cCCccccCCCcccccCcccEEEecceecc-cCC-CccCCCC
Q 013263 88 GNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISL-NDDECIELPHCIYTCKTLEVLKLDMNFFI-KTP-PTIFFPS 164 (446)
Q Consensus 88 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~-~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~-~~~~l~~ 164 (446)
+.|+.+.+....-.....+...+ .....+++|+++. +.. ...+|..+..+++|++|+|.++.+. ..| .+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l--~~l~~L~~L~L~~~n~l-~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNL-VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG--GGCTTCSEEEEEEETTE-ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhH--hCCCCCCeeeCCCCCcc-cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 45777777755422100111111 1235899999984 442 4477888889999999999999886 334 3568999
Q ss_pred ccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEe-c-cCcceEEEeeccCcccccCceEEEEecccce
Q 013263 165 AKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-S-LTLKRLRLELEAPEEDYITKYKVIIRAPNLE 242 (446)
Q Consensus 165 L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~-~-~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~ 242 (446)
|++|+|+++.+.. .+...+..+++|++|.+.+|.+.+. ....+. . ++|+.|++..|...+... ..+...+|+
T Consensus 127 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~~~----~~~~~l~L~ 200 (313)
T 1ogq_A 127 LVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIP----PTFANLNLA 200 (313)
T ss_dssp CCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEEEECC----GGGGGCCCS
T ss_pred CCEEeCCCCccCC-cCChHHhcCCCCCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCeeeccCC----hHHhCCccc
Confidence 9999999998872 2233467899999999998764321 111111 2 389999999886532100 001112389
Q ss_pred eEEeeccCCcc---eEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCC
Q 013263 243 QLYIRDHGPGL---YVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDH 319 (446)
Q Consensus 243 ~L~l~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~ 319 (446)
.|++.++.... ..+..+++|+.+++....-... . ..+..+++++.|.++.+.+.... ..
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~-~~~~~l~~L~~L~Ls~N~l~~~~------p~ 262 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-----------L-GKVGLSKNLNGLDLRNNRIYGTL------PQ 262 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-----------G-GGCCCCTTCCEEECCSSCCEECC------CG
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee-----------c-CcccccCCCCEEECcCCcccCcC------Ch
Confidence 99998765432 2356789999998876543110 0 11467899999999988775221 23
Q ss_pred CCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecc
Q 013263 320 SFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEG 361 (446)
Q Consensus 320 ~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 361 (446)
.+..+++|+.|+++.+.-.. .++.. ..+++|+.|++.+.
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~--~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCG--EIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEE--ECCCS-TTGGGSCGGGTCSS
T ss_pred HHhcCcCCCEEECcCCcccc--cCCCC-ccccccChHHhcCC
Confidence 34567899999998764210 01112 56778888877663
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.96 E-value=2.2e-11 Score=114.34 Aligned_cols=269 Identities=12% Similarity=-0.002 Sum_probs=167.0
Q ss_pred CCceEEEEEecCCccccC-CCcccccCcccEEEecceecccC-C-CccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 116 RNVREIEISLNDDECIEL-PHCIYTCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
.+++.|+++.+.. ..+ |..+..+++|++|++.+|.+... + .+..+++|++|+|+++.+.. +.. ..+++|++
T Consensus 54 ~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVE 127 (332)
T ss_dssp TTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCE
T ss_pred CCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCE
Confidence 4789999977653 344 44677799999999999987664 2 35679999999999998771 111 12389999
Q ss_pred EEEEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEee
Q 013263 193 LSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGI 271 (446)
Q Consensus 193 L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~ 271 (446)
|.+.+|....+ ..-.+ ..++|+.|++..|......... ..+...+|++|++.++.....+..-.++|+.+++....
T Consensus 128 L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 128 LRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEP--GAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK 204 (332)
T ss_dssp EECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCT--TSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC
T ss_pred EECCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCc--ccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc
Confidence 99999875544 22112 2589999999998764210000 01112289999998876655443334677777765542
Q ss_pred eeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCC
Q 013263 272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMP 351 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p 351 (446)
-.. . ....+..+++++.|.++++.+..+. ...+..+++|+.|+++.+.-. .++.-+..+|
T Consensus 205 i~~-~----------~~~~l~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~ 264 (332)
T 2ft3_A 205 IQA-I----------ELEDLLRYSKLYRLGLGHNQIRMIE------NGSLSFLPTLRELHLDNNKLS---RVPAGLPDLK 264 (332)
T ss_dssp CCC-C----------CTTSSTTCTTCSCCBCCSSCCCCCC------TTGGGGCTTCCEEECCSSCCC---BCCTTGGGCT
T ss_pred CCc-c----------CHHHhcCCCCCCEEECCCCcCCcCC------hhHhhCCCCCCEEECCCCcCe---ecChhhhcCc
Confidence 110 0 0123567899999999988776433 223456789999999877532 2333467899
Q ss_pred CCceEEEecccCCCC--CCCcc-cccccccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEEc
Q 013263 352 KLESIVFEEGVDFEW--PEPSL-ALGCLLSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIGG 415 (446)
Q Consensus 352 ~L~~L~i~~~~~~~~--~~~~~-~~~~~~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~~ 415 (446)
+|+.|+++.+.-... ..... ........|+.+.+.+-..... ......+...+.|+.+.+..
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~--~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW--EVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG--GSCGGGGTTBCCSTTEEC--
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc--ccCcccccccchhhhhhccc
Confidence 999999988541111 11100 0112245688888774322211 12223356778888887654
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.96 E-value=1.6e-12 Score=120.59 Aligned_cols=219 Identities=16% Similarity=0.120 Sum_probs=110.0
Q ss_pred CceEEEEEecCCccccCCCcc-cccCcccEEEecceecccC----CCccCCCCccEEEeeeEEeccchHHHHhccCCCcc
Q 013263 117 NVREIEISLNDDECIELPHCI-YTCKTLEVLKLDMNFFIKT----PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALE 191 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 191 (446)
++++|++..+.. ..+|..+ ..+++|++|+|.++.+... .....+++|++|+|+++.+.. +...+.++++|+
T Consensus 29 ~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~ 104 (306)
T 2z66_A 29 SATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLE 104 (306)
T ss_dssp TCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTCC
T ss_pred CCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCCC
Confidence 566676665542 3555543 3567777777776655421 223356777777777666551 111245567777
Q ss_pred eEEEEeeEeCCCCce-EEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcc----eEEeCCCCceEE
Q 013263 192 DLSIKGYIYGTDSVT-LNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL----YVVHELHSLTKA 265 (446)
Q Consensus 192 ~L~L~~~~~~~~~~~-~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~~ 265 (446)
.|.+.+|...+. .. -.+ ..++|+.|+++.|....... ......++|++|.+.++.... ..+..+++|+.+
T Consensus 105 ~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 105 HLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp EEECTTSEEESS-TTTTTTTTCTTCCEEECTTSCCEECST---TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred EEECCCCccccc-ccchhhhhccCCCEEECCCCcCCccch---hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 777766654333 11 011 23667777776664331100 001124666777666654332 124456666666
Q ss_pred EEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHH
Q 013263 266 VVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAH 345 (446)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ 345 (446)
++..+.-.. .....+..+++++.|.++++.+..+. ...+..+++|+.|+++.+.-.. ..+.
T Consensus 181 ~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~N~l~~--~~~~ 241 (306)
T 2z66_A 181 DLSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNFFSLD------TFPYKCLNSLQVLDYSLNHIMT--SKKQ 241 (306)
T ss_dssp ECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCSBCC------SGGGTTCTTCCEEECTTSCCCB--CSSS
T ss_pred ECCCCCcCC-----------cCHHHhcCCCCCCEEECCCCccCccC------hhhccCcccCCEeECCCCCCcc--cCHH
Confidence 665432100 00122455667777777766554322 1123445667777776553211 0111
Q ss_pred HHhhCC-CCceEEEeccc
Q 013263 346 IFSRMP-KLESIVFEEGV 362 (446)
Q Consensus 346 ll~~~p-~L~~L~i~~~~ 362 (446)
.+..+| +|+.|++.+++
T Consensus 242 ~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SCCCCCTTCCEEECTTCC
T ss_pred HHHhhhccCCEEEccCCC
Confidence 233443 67777776643
No 62
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.95 E-value=2.4e-10 Score=114.10 Aligned_cols=105 Identities=11% Similarity=0.124 Sum_probs=61.5
Q ss_pred ecccceeEEeeccCCcc---eEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCcccc-ccc
Q 013263 237 RAPNLEQLYIRDHGPGL---YVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFA-LDR 312 (446)
Q Consensus 237 ~~p~L~~L~l~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~-~~~ 312 (446)
..++|++|++.++.... ..+.++++|+.+++..+. ......+...+..+++++.|.++.+.+.. ++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~---------l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~- 391 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ---------LKELSKIAEMTTQMKSLQQLDISQNSVSYDEK- 391 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC---------CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG-
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc---------cCccccchHHHhhCCCCCEEECCCCcCCcccc-
Confidence 45677777777765433 224567777777775542 11222445667889999999999887764 32
Q ss_pred cccccCCCCCCCCccceEEEEecccccHHHHHHHHhhC-CCCceEEEecc
Q 013263 313 LDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRM-PKLESIVFEEG 361 (446)
Q Consensus 313 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~-p~L~~L~i~~~ 361 (446)
...+..+++|+.|+++.+.-.. .+.... ++|+.|+++.+
T Consensus 392 -----~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~~L~~L~Ls~N 431 (520)
T 2z7x_B 392 -----KGDCSWTKSLLSLNMSSNILTD-----TIFRCLPPRIKVLDLHSN 431 (520)
T ss_dssp -----GCSCCCCTTCCEEECCSSCCCG-----GGGGSCCTTCCEEECCSS
T ss_pred -----cchhccCccCCEEECcCCCCCc-----chhhhhcccCCEEECCCC
Confidence 1223455677777776654211 111222 46677666663
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.95 E-value=1.1e-10 Score=119.36 Aligned_cols=225 Identities=12% Similarity=0.054 Sum_probs=137.3
Q ss_pred CCceEEEEEecCCccccCCC--cccccCcccEEEecceecc-cCCCccCCCCccEEEeeeEEeccchHHHHhccCCC-cc
Q 013263 116 RNVREIEISLNDDECIELPH--CIYTCKTLEVLKLDMNFFI-KTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPA-LE 191 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le 191 (446)
.++++|++..+.. ..+|. .+..+++|++|++.+|.+. ..|.+..+++|++|+|+++.+. .+..-+.++++ |+
T Consensus 305 ~~L~~L~L~~n~l--~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYNNL--KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSSCC--SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCC
T ss_pred CCCCEEECCCCcC--CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCc
Confidence 5788888877764 37887 7888899999999988877 5566667888999999988877 23333677888 99
Q ss_pred eEEEEeeEeCCCCceEEEe---ccCcceEEEeeccCcccccC-c---eEEEEecccceeEEeeccCCcceE---EeCCCC
Q 013263 192 DLSIKGYIYGTDSVTLNIP---SLTLKRLRLELEAPEEDYIT-K---YKVIIRAPNLEQLYIRDHGPGLYV---VHELHS 261 (446)
Q Consensus 192 ~L~L~~~~~~~~~~~~~i~---~~~L~~L~i~~~~~~~~~~~-~---~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~ 261 (446)
.|.+.+|.+..+ .. .+. .++|+.|+++.|...+.... . .......++|++|++.++.....+ +..+++
T Consensus 381 ~L~Ls~N~l~~l-p~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 381 NLSFAHNKLKYI-PN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458 (636)
T ss_dssp EEECCSSCCSSC-CS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred EEEccCCcCccc-ch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC
Confidence 999988875543 11 111 24788888888876431000 0 001113468888888887655432 345778
Q ss_pred ceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCC--CCCccceEEEEeccccc
Q 013263 262 LTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFP--TFPFLNRLEVEGVGACG 339 (446)
Q Consensus 262 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~~~ 339 (446)
|+.+++....-.. ... .........++.+++++.|.++.+.+..++ ..+. .+++|+.|+|+.+.-..
T Consensus 459 L~~L~Ls~N~l~~-i~~---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-------~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 459 LSSINLMGNMLTE-IPK---NSLKDENENFKNTYLLTSIDLRFNKLTKLS-------DDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp CSEEECCSSCCSB-CCS---SSSEETTEECTTGGGCCEEECCSSCCCBCC-------GGGSTTTCTTCCEEECCSSCCSS
T ss_pred CCEEECCCCCCCC-cCH---HHhccccccccccCCccEEECcCCcCCccC-------hhhhhccCCCcCEEECCCCCCCC
Confidence 8888776543210 000 000000000112237888888877665333 1222 56677777777664311
Q ss_pred HHHHHHHHhhCCCCceEEEec
Q 013263 340 WLSLAHIFSRMPKLESIVFEE 360 (446)
Q Consensus 340 ~~~l~~ll~~~p~L~~L~i~~ 360 (446)
++.-+..+++|+.|+++.
T Consensus 528 ---ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 528 ---FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp ---CCCGGGGCSSCCEEECCS
T ss_pred ---cChhhhcCCCCCEEECCC
Confidence 344455677888888754
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=1.6e-10 Score=121.05 Aligned_cols=224 Identities=9% Similarity=-0.049 Sum_probs=141.6
Q ss_pred CCceEEEEEecCCccc----------------cCCCccc--ccCcccEEEecceeccc-CC-CccCCCCccEEEeeeEE-
Q 013263 116 RNVREIEISLNDDECI----------------ELPHCIY--TCKTLEVLKLDMNFFIK-TP-PTIFFPSAKILHVILNT- 174 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~~~~-~~-~~~~l~~L~~L~L~~~~- 174 (446)
.++++|+|+.+..... .+|..+. ++++|++|+|.+|.+.. .| .+..+++|++|+|+++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 5899999987763210 2898887 89999999999997543 24 45689999999999997
Q ss_pred ecc----chHHHH---hccCCCcceEEEEeeEeCCCCce-EEE-eccCcceEEEeeccCcccccCceEEEEecccceeEE
Q 013263 175 IDN----NFSDWL---FSKCPALEDLSIKGYIYGTDSVT-LNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLY 245 (446)
Q Consensus 175 ~~~----~~l~~l---l~~cp~Le~L~L~~~~~~~~~~~-~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~ 245 (446)
+.. ..+..+ +..+|+|+.|.|.+|.+..+ .. -.+ ..++|+.|.++.|..... . .....++|+.|+
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-p~~~~l~~L~~L~~L~Ls~N~l~~l----p-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-PASASLQKMVKLGLLDCVHNKVRHL----E-AFGTNVKLTDLK 601 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-CCHHHHTTCTTCCEEECTTSCCCBC----C-CCCTTSEESEEE
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-CChhhhhcCCCCCEEECCCCCcccc----h-hhcCCCcceEEE
Confidence 553 223332 24667999999999865533 11 012 247899999998876521 1 223568899999
Q ss_pred eeccCCcceE--EeCCCC-ceEEEEEEeeeeecCCCCchhhHHHHHHHHhcC--CCeeEEEEeCCccccccccccccCCC
Q 013263 246 IRDHGPGLYV--VHELHS-LTKAVVDYGIECILDYDSPEDVAQAVVDMLRDI--KNIKSLSLSSGTMFALDRLDYANDHS 320 (446)
Q Consensus 246 l~~~~~~~~~--~~~~~~-L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~l~~L~L~~~~~~~~~~~~~~~~~~ 320 (446)
+.++....++ +.++++ |+.+++..+.-. .+...+..+ ++++.|.++.+.+.... +.. ...
T Consensus 602 Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~------------~lp~~~~~~~~~~L~~L~Ls~N~l~g~i--p~l-~~~ 666 (876)
T 4ecn_A 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK------------YIPNIFNAKSVYVMGSVDFSYNKIGSEG--RNI-SCS 666 (876)
T ss_dssp CCSSCCSCCCTTSCEECTTCCEEECCSSCCC------------SCCSCCCTTCSSCEEEEECCSSCTTTTS--SSC-SSC
T ss_pred CcCCccccchHHHhhccccCCEEECcCCCCC------------cCchhhhccccCCCCEEECcCCcCCCcc--ccc-hhh
Confidence 9887655332 455677 888887665311 011122333 34888888887654211 000 001
Q ss_pred CC--CCCccceEEEEecccccHHHHHHHHhhCCCCceEEEeccc
Q 013263 321 FP--TFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 321 ~~--~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 362 (446)
.. ..++|+.|+++.+.-.. .-..++..+|+|+.|+++.+.
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSCC
T ss_pred hccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCCc
Confidence 11 23478888887765321 122455678888888887754
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.93 E-value=8.6e-10 Score=111.61 Aligned_cols=246 Identities=17% Similarity=0.104 Sum_probs=158.2
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEE
Q 013263 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (446)
+++.|+++.+. ...+|..+. ++|++|+|.+|.+...|. .+++|++|+|+++.+.. +. ..+++|+.|.+.
T Consensus 41 ~l~~L~ls~n~--L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSC--CSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--CC---CCCTTCCEEEEC
T ss_pred CCcEEEecCCC--cCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEECc
Confidence 68888887665 347787665 899999999999887666 78999999999998872 21 168999999999
Q ss_pred eeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecC
Q 013263 197 GYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILD 276 (446)
Q Consensus 197 ~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~ 276 (446)
+|.+.++ .. ..++|+.|.+.+|..... ....++|++|++.++...... ...++|+.+++..+.-.
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~l-------p~~l~~L~~L~Ls~N~l~~l~-~~~~~L~~L~L~~N~l~--- 174 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTSL-------PVLPPGLQELSVSDNQLASLP-ALPSELCKLWAYNNQLT--- 174 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSCC-------CCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCS---
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCcC-------CCCCCCCCEEECcCCcCCCcC-CccCCCCEEECCCCCCC---
Confidence 9876655 22 568999999999976532 123499999999988765432 24577888877654210
Q ss_pred CCCchhhHHHHHHHHhcCCCeeEEEEeCCcccccccc---------ccccCCCCC-CCCccceEEEEecccccHHHHHHH
Q 013263 277 YDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRL---------DYANDHSFP-TFPFLNRLEVEGVGACGWLSLAHI 346 (446)
Q Consensus 277 ~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~---------~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~l~~l 346 (446)
.+...+++++.|.++.+.+..++.. .......+| .+++|+.|+++.+.-.. ++
T Consensus 175 ------------~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~---lp-- 237 (622)
T 3g06_A 175 ------------SLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS---LP-- 237 (622)
T ss_dssp ------------CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC---CC--
T ss_pred ------------CCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc---CC--
Confidence 0114567888888887765533200 000001111 23566666666553211 11
Q ss_pred HhhCCCCceEEEecccCCCCCCCcccccccccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEEcccc
Q 013263 347 FSRMPKLESIVFEEGVDFEWPEPSLALGCLLSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIGGEQF 418 (446)
Q Consensus 347 l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~~~~~ 418 (446)
..+++|+.|+++.+ .+...+. ..++|+.+.+.+..-. .+.. -+.+.++|+.+.+...+.
T Consensus 238 -~~l~~L~~L~Ls~N------~L~~lp~-~~~~L~~L~Ls~N~L~----~lp~-~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 238 -VLPSELKELMVSGN------RLTSLPM-LPSGLLSLSVYRNQLT----RLPE-SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -CCCTTCCEEECCSS------CCSCCCC-CCTTCCEEECCSSCCC----SCCG-GGGGSCTTCEEECCSCCC
T ss_pred -CCCCcCcEEECCCC------CCCcCCc-ccccCcEEeCCCCCCC----cCCH-HHhhccccCEEEecCCCC
Confidence 45567777777663 2222333 4577888877642211 1112 246788999998876654
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.90 E-value=8.3e-11 Score=107.84 Aligned_cols=211 Identities=16% Similarity=0.133 Sum_probs=129.1
Q ss_pred CCceEEEEEecCCccccCC-CcccccCcccEEEecceecccC--CCccCCCCccEEEeeeEE-eccchHHHHhccCCCcc
Q 013263 116 RNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNT-IDNNFSDWLFSKCPALE 191 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le 191 (446)
.++++|+++.+.. ..++ ..+..+++|++|++.++.+... ..+..+++|++|+|+++. +. ......+.++++|+
T Consensus 32 ~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCC
Confidence 4677887765542 3344 3455688888888888876543 235577888888888876 44 11123356788888
Q ss_pred eEEEEeeEeCCCCceEEEe-ccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceE---EeCCCCceEEEE
Q 013263 192 DLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVV 267 (446)
Q Consensus 192 ~L~L~~~~~~~~~~~~~i~-~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l 267 (446)
+|.+.+|...+. ..-.+. .++|+.|++..|....... ...-..++|++|++.++...... +.++++|+.+++
T Consensus 109 ~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 109 TLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPD---DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp EEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCEE-CHhHhhCCcCCCEEECCCCcccccCH---hHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 888888764433 111122 4788888888876542210 01123578888888887655433 456788888887
Q ss_pred EEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEeccc---ccHHHHH
Q 013263 268 DYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA---CGWLSLA 344 (446)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~---~~~~~l~ 344 (446)
....-.. .....+..+++++.|.++++.+..+. ...+..+++|+.|+++.+.. +...++.
T Consensus 185 ~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~ 247 (285)
T 1ozn_A 185 HQNRVAH-----------VHPHAFRDLGRLMTLYLFANNLSALP------TEALAPLRALQYLRLNDNPWVCDCRARPLW 247 (285)
T ss_dssp CSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCC------HHHHTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred CCCcccc-----------cCHhHccCcccccEeeCCCCcCCcCC------HHHcccCcccCEEeccCCCccCCCCcHHHH
Confidence 6543211 00133567899999999988765433 12234678899999986542 2344444
Q ss_pred HHHhhC
Q 013263 345 HIFSRM 350 (446)
Q Consensus 345 ~ll~~~ 350 (446)
..++..
T Consensus 248 ~~l~~~ 253 (285)
T 1ozn_A 248 AWLQKF 253 (285)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 454443
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.89 E-value=6.4e-10 Score=108.97 Aligned_cols=207 Identities=17% Similarity=0.198 Sum_probs=143.7
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
.++++|+|+.+.. ....|..+.++++|++|+|.+|.+...+. +..+++|++|+|+++.+.. .-...+.++++|+.|
T Consensus 99 ~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcc-CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEE
Confidence 4799999977653 22233556679999999999998877543 5579999999999998872 112346789999999
Q ss_pred EEEeeEeCCCCceEEE----eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce---EEeCCCCceEEE
Q 013263 194 SIKGYIYGTDSVTLNI----PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAV 266 (446)
Q Consensus 194 ~L~~~~~~~~~~~~~i----~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~ 266 (446)
.+.+|. .+ ..+.. ..++|+.|+++.|..... ......++|++|++.++..... .+.++++|+.++
T Consensus 177 ~l~~~~--~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 177 DLGELK--KL-EYISEGAFEGLFNLKYLNLGMCNIKDM-----PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp ECCCCT--TC-CEECTTTTTTCTTCCEEECTTSCCSSC-----CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred eCCCCC--Cc-cccChhhccCCCCCCEEECCCCccccc-----ccccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 998853 22 22221 237899999999976532 1123568999999998876544 356788999988
Q ss_pred EEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecc---cccHHHH
Q 013263 267 VDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG---ACGWLSL 343 (446)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~---~~~~~~l 343 (446)
+....-.. .....+..+++|+.|.|+++.+..+. ...+..+++|+.|+|+.+. .+...++
T Consensus 249 L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 249 VMNSQVSL-----------IERNAFDGLASLVELNLAHNNLSSLP------HDLFTPLRYLVELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp CTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCC------TTSSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred eCCCcCce-----------ECHHHhcCCCCCCEEECCCCcCCccC------hHHhccccCCCEEEccCCCcCCCCCchHH
Confidence 86543211 00123567899999999998776544 3345567899999998653 2455566
Q ss_pred HHHHhh
Q 013263 344 AHIFSR 349 (446)
Q Consensus 344 ~~ll~~ 349 (446)
...++.
T Consensus 312 ~~~l~~ 317 (452)
T 3zyi_A 312 AWWLRE 317 (452)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 68
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.88 E-value=8.1e-10 Score=72.74 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=33.9
Q ss_pred CCCcCCCCchHHHHHHhcCCChhhhhhccccchhHHHHhc
Q 013263 7 TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWT 46 (446)
Q Consensus 7 ~~d~is~LPdelL~~Ils~L~~~~~~r~s~vsrrWr~lw~ 46 (446)
..+.++.||+|++.+||++||.+|+++++.|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4567999999999999999999999999999999997643
No 69
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.88 E-value=3e-11 Score=123.09 Aligned_cols=265 Identities=12% Similarity=0.075 Sum_probs=173.6
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceeccc-CC--CccCCCCccEEEeeeEEeccc-hHHHHhccCCCcc
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIK-TP--PTIFFPSAKILHVILNTIDNN-FSDWLFSKCPALE 191 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-~~--~~~~l~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le 191 (446)
.++++|++..+.. ....|..+..+++|++|++.+|.+.. .+ .+..+++|++|+++++.+... .....+.++++|+
T Consensus 301 ~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 379 (606)
T 3t6q_A 301 STLKKLVLSANKF-ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379 (606)
T ss_dssp TTCCEEECTTCCC-SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred ccCCEEECccCCc-CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCC
Confidence 4799999976653 22334567789999999999997652 22 356899999999999988722 1233467899999
Q ss_pred eEEEEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce---EEeCCCCceEEEE
Q 013263 192 DLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVV 267 (446)
Q Consensus 192 ~L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l 267 (446)
.|.+.+|...+. ..-.+ ..++|+.|++..|...+.. ........++|+.|++.++..... .+..+++|+.+++
T Consensus 380 ~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 380 SLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLKVKD--AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp EEECCSCSCEEE-CTTTTTTCTTCSEEECTTCCEECCT--TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCcC-CHHHhcCCccCCeEECCCCcCCCcc--cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 999998753221 11111 2488999999988654210 011122468999999998765432 3567899999988
Q ss_pred EEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHH
Q 013263 268 DYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIF 347 (446)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll 347 (446)
..+.-.. ........+..+++++.|.++++.+..+. ...+..+++|+.|+++.+.-.. ..+..+
T Consensus 457 ~~n~l~~--------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l 520 (606)
T 3t6q_A 457 QGNHFPK--------GNIQKTNSLQTLGRLEILVLSFCDLSSID------QHAFTSLKMMNHVDLSHNRLTS--SSIEAL 520 (606)
T ss_dssp TTCBCGG--------GEECSSCGGGGCTTCCEEECTTSCCCEEC------TTTTTTCTTCCEEECCSSCCCG--GGGGGG
T ss_pred CCCCCCc--------cccccchhhccCCCccEEECCCCccCccC------hhhhccccCCCEEECCCCccCc--CChhHh
Confidence 7653210 00000123678999999999998776443 3455678899999998875311 223455
Q ss_pred hhCCCCceEEEecccCCCCCCCccc-cc--ccccceeEEEEEE--eeCchhHHHHHHHHHhhccc
Q 013263 348 SRMPKLESIVFEEGVDFEWPEPSLA-LG--CLLSHVKIIVIGE--FEGEENEMKLIKYLLKNGEV 407 (446)
Q Consensus 348 ~~~p~L~~L~i~~~~~~~~~~~~~~-~~--~~~~~L~~v~i~~--~~g~~~~~~~~~~ll~~a~~ 407 (446)
..+++| .|++..+. .... +. ...++|+.+.+.+ +.+......++.++-++...
T Consensus 521 ~~l~~L-~L~L~~N~------l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~ 578 (606)
T 3t6q_A 521 SHLKGI-YLNLASNH------ISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQK 578 (606)
T ss_dssp TTCCSC-EEECCSSC------CCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGG
T ss_pred Cccccc-EEECcCCc------ccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCccc
Confidence 677888 77777632 2222 11 2346889998883 66666667888888665443
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.86 E-value=3.6e-10 Score=102.84 Aligned_cols=191 Identities=14% Similarity=0.071 Sum_probs=103.7
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
..+++|++..+.. ..+ ..+..+++|++|++.+|.+...+....+++|++|+|+++.+. +.....+.++++|+.|.+
T Consensus 41 ~~L~~L~l~~~~i--~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDI--KSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCC--CCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCc--ccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEEC
Confidence 3677777654431 122 235567777777777777666555567777777777777666 111233556777777777
Q ss_pred EeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeee
Q 013263 196 KGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECI 274 (446)
Q Consensus 196 ~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~ 274 (446)
.+|.+.+. ..-.+ ..++|+.|++.+|...+... ...-..++|+.|++.++......
T Consensus 117 ~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~------------------- 173 (272)
T 3rfs_A 117 VENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPK---GVFDKLTNLTELDLSYNQLQSLP------------------- 173 (272)
T ss_dssp TTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCCCC-------------------
T ss_pred CCCcCCcc-CHHHhccCCCCCEEECCCCccCccCH---HHhccCccCCEEECCCCCcCccC-------------------
Confidence 77654433 11111 12556666666554331100 00012344444444443221100
Q ss_pred cCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCc
Q 013263 275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLE 354 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~ 354 (446)
...+..+++++.|.++.+.+..+. ...+..+++|+.|++..+... ..||+|+
T Consensus 174 -------------~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~ 225 (272)
T 3rfs_A 174 -------------EGVFDKLTQLKDLRLYQNQLKSVP------DGVFDRLTSLQYIWLHDNPWD---------CTCPGIR 225 (272)
T ss_dssp -------------TTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSSCBC---------CCTTTTH
T ss_pred -------------HHHhcCCccCCEEECCCCcCCccC------HHHHhCCcCCCEEEccCCCcc---------ccCcHHH
Confidence 022456778888888877665433 233456778888888766431 2466777
Q ss_pred eEEEecc
Q 013263 355 SIVFEEG 361 (446)
Q Consensus 355 ~L~i~~~ 361 (446)
.|.+...
T Consensus 226 ~l~~~~n 232 (272)
T 3rfs_A 226 YLSEWIN 232 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.85 E-value=8.7e-10 Score=101.21 Aligned_cols=216 Identities=14% Similarity=0.087 Sum_probs=116.1
Q ss_pred ccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCcce
Q 013263 137 IYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (446)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~ 216 (446)
+.++++|+++++.++.+...|... .+++++|+|+++.+..- ....+.++++|+.|.+.+|.+.++ ... -..++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCE
Confidence 445677888888887777654322 36788888888877621 123456788888888887654332 111 12467777
Q ss_pred EEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCC
Q 013263 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKN 296 (446)
Q Consensus 217 L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 296 (446)
|+++.|..... .......++|++|.+.++....... ..+..+++
T Consensus 82 L~Ls~N~l~~l----~~~~~~l~~L~~L~l~~N~l~~l~~--------------------------------~~~~~l~~ 125 (290)
T 1p9a_G 82 LDLSHNQLQSL----PLLGQTLPALTVLDVSFNRLTSLPL--------------------------------GALRGLGE 125 (290)
T ss_dssp EECCSSCCSSC----CCCTTTCTTCCEEECCSSCCCCCCS--------------------------------STTTTCTT
T ss_pred EECCCCcCCcC----chhhccCCCCCEEECCCCcCcccCH--------------------------------HHHcCCCC
Confidence 77777755321 1111234566666666554332210 11345666
Q ss_pred eeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccCCCCCCCcccccc-
Q 013263 297 IKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVDFEWPEPSLALGC- 375 (446)
Q Consensus 297 l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~- 375 (446)
|+.|.++.+.+..+. ...+..+++|+.|+|+.+.-.. ....++..+++|+.|+++.+. +...+..
T Consensus 126 L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~------l~~ip~~~ 191 (290)
T 1p9a_G 126 LQELYLKGNELKTLP------PGLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENS------LYTIPKGF 191 (290)
T ss_dssp CCEEECTTSCCCCCC------TTTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSC------CCCCCTTT
T ss_pred CCEEECCCCCCCccC------hhhcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCCc------CCccChhh
Confidence 666666666554332 2233455666666665543211 011234556777777776632 1111111
Q ss_pred -cccceeEEEEEE--eeCchhHHHHHHHHHhhcc
Q 013263 376 -LLSHVKIIVIGE--FEGEENEMKLIKYLLKNGE 406 (446)
Q Consensus 376 -~~~~L~~v~i~~--~~g~~~~~~~~~~ll~~a~ 406 (446)
...+|+.+.+.+ +.+......+..++-++..
T Consensus 192 ~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~ 225 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225 (290)
T ss_dssp TTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGG
T ss_pred cccccCCeEEeCCCCccCcCccHHHHHHHHhCcc
Confidence 123577776663 4444444566677666543
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.84 E-value=4.7e-10 Score=115.87 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=40.9
Q ss_pred CCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccC-CCCCCCc-ccc---cccccceeEEEEEEeeCchhHHH
Q 013263 322 PTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVD-FEWPEPS-LAL---GCLLSHVKIIVIGEFEGEENEMK 396 (446)
Q Consensus 322 ~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~-~~~~~~~-~~~---~~~~~~L~~v~i~~~~g~~~~~~ 396 (446)
..+++|+.|+++.+.-.. .....+..+++|+.|+++.+.- .-+.... ..+ -...++|+.+.+.+-.-. .
T Consensus 477 ~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~----~ 550 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIAN--INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD----E 550 (680)
T ss_dssp TTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC----C
T ss_pred ccCCCCCEEECCCCCCCc--CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC----C
Confidence 345566666665543210 0112345566666666665430 0000000 000 112356777766532111 1
Q ss_pred HHHHHHhhccccCeEEEEccc
Q 013263 397 LIKYLLKNGEVLNAMIIGGEQ 417 (446)
Q Consensus 397 ~~~~ll~~a~~L~~l~i~~~~ 417 (446)
+....+.+.++|+.+.+....
T Consensus 551 i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred CCHHHcccccCcceeECCCCC
Confidence 112235777888888886543
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.84 E-value=5.1e-10 Score=101.68 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=46.4
Q ss_pred cCCCcccccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE
Q 013263 132 ELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI 209 (446)
Q Consensus 132 ~lp~~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i 209 (446)
.+|..+. ++|++|+|.++.+...+ .+..+++|++|+|+++.+. ..-..++.++++|+.|.+.+|....+ ..-.+
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~ 105 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL-PIGVF 105 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCC-CTTTT
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcC-CHhHc
Confidence 4444332 45667777766665543 2445667777777666655 11122345566677777666543332 11011
Q ss_pred -eccCcceEEEeeccC
Q 013263 210 -PSLTLKRLRLELEAP 224 (446)
Q Consensus 210 -~~~~L~~L~i~~~~~ 224 (446)
..++|+.|.+..|..
T Consensus 106 ~~l~~L~~L~l~~n~l 121 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQL 121 (270)
T ss_dssp TTCSSCCEEECCSSCC
T ss_pred ccccCCCEEECCCCcc
Confidence 125566666665543
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.84 E-value=1.4e-09 Score=109.72 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=44.5
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCC---CccCCCCccEEEeeeEEeccchHHHHhccCCCc--
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP---PTIFFPSAKILHVILNTIDNNFSDWLFSKCPAL-- 190 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~L-- 190 (446)
.++++|+++.+.- ..+|.. .+++|++|+|++|.+...+ .+..+++|++|+|+++.+....+ .++++|
T Consensus 100 ~~L~~L~Ls~N~l--~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L 171 (562)
T 3a79_B 100 QDLEYLDVSHNRL--QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHL 171 (562)
T ss_dssp TTCCEEECTTSCC--CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCE
T ss_pred CCCCEEECCCCcC--CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhcee
Confidence 3677777765542 355554 5677777777777665432 34466777777777766653222 233444
Q ss_pred ceEEEEeeE
Q 013263 191 EDLSIKGYI 199 (446)
Q Consensus 191 e~L~L~~~~ 199 (446)
+.|.+.+|.
T Consensus 172 ~~L~L~~n~ 180 (562)
T 3a79_B 172 SCILLDLVS 180 (562)
T ss_dssp EEEEEEESS
T ss_pred eEEEeeccc
Confidence 666666553
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.83 E-value=4.3e-11 Score=111.28 Aligned_cols=84 Identities=20% Similarity=0.074 Sum_probs=44.2
Q ss_pred ccCcccEEEecceeccc-CCC-c--cCCCCccEEEeeeEEecc--chHHHHhc-cCCCcceEEEEeeEeCCCCceEEE-e
Q 013263 139 TCKTLEVLKLDMNFFIK-TPP-T--IFFPSAKILHVILNTIDN--NFSDWLFS-KCPALEDLSIKGYIYGTDSVTLNI-P 210 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~-~~~-~--~~l~~L~~L~L~~~~~~~--~~l~~ll~-~cp~Le~L~L~~~~~~~~~~~~~i-~ 210 (446)
.+++|++|+|.+|.+.. .|. . ..+++|++|+|+++.+.. ..+..+.. .+++|+.|.+.+|.+.+. ..-.+ .
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhcc
Confidence 46667777777776653 222 2 456777777777776652 12222211 126777777777654433 11111 2
Q ss_pred ccCcceEEEeecc
Q 013263 211 SLTLKRLRLELEA 223 (446)
Q Consensus 211 ~~~L~~L~i~~~~ 223 (446)
.++|+.|++++|.
T Consensus 172 l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 172 FPALSTLDLSDNP 184 (312)
T ss_dssp CSSCCEEECCSCT
T ss_pred CCCCCEEECCCCC
Confidence 3556666665554
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.83 E-value=1.6e-10 Score=107.44 Aligned_cols=205 Identities=14% Similarity=0.037 Sum_probs=114.9
Q ss_pred cCCCcccccCcccEEEecceeccc--CCCcc--------CCCCccEEEeeeEEeccchHHHH-hccCCCcceEEEEeeEe
Q 013263 132 ELPHCIYTCKTLEVLKLDMNFFIK--TPPTI--------FFPSAKILHVILNTIDNNFSDWL-FSKCPALEDLSIKGYIY 200 (446)
Q Consensus 132 ~lp~~l~~~~~L~~L~L~~~~~~~--~~~~~--------~l~~L~~L~L~~~~~~~~~l~~l-l~~cp~Le~L~L~~~~~ 200 (446)
.+|..+... |++|+|.++.+.. .+... .+++|++|+|+++.+....-..+ +.++++|+.|++.+|.+
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 345544443 7778887776643 12222 47888888888888762211222 36788888888888765
Q ss_pred CCCCceEEEe-----ccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcc-------eEEeCCCCceEEEEE
Q 013263 201 GTDSVTLNIP-----SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL-------YVVHELHSLTKAVVD 268 (446)
Q Consensus 201 ~~~~~~~~i~-----~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~-------~~~~~~~~L~~~~l~ 268 (446)
.+. ...--. .++|++|++++|...+... ...-..++|++|+++++.... ..+.++++|+.+++.
T Consensus 134 ~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~ 209 (312)
T 1wwl_A 134 ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC---EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209 (312)
T ss_dssp SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT---TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT
T ss_pred cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH---HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC
Confidence 443 110001 1788888888886643210 111246788888888775322 122567788877775
Q ss_pred EeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHh
Q 013263 269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS 348 (446)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~ 348 (446)
...- .........++..+++++.|.++.+.+.... ....+..+++|+.|+++.+.-. .++.-+
T Consensus 210 ~N~l--------~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~~l~~L~~L~Ls~N~l~---~ip~~~- 272 (312)
T 1wwl_A 210 NAGM--------ETPSGVCSALAAARVQLQGLDLSHNSLRDAA-----GAPSCDWPSQLNSLNLSFTGLK---QVPKGL- 272 (312)
T ss_dssp TSCC--------CCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-----CCSCCCCCTTCCEEECTTSCCS---SCCSSC-
T ss_pred CCcC--------cchHHHHHHHHhcCCCCCEEECCCCcCCccc-----chhhhhhcCCCCEEECCCCccC---hhhhhc-
Confidence 5421 1111233455567788888888877654321 0112233567777777665421 111111
Q ss_pred hCCCCceEEEec
Q 013263 349 RMPKLESIVFEE 360 (446)
Q Consensus 349 ~~p~L~~L~i~~ 360 (446)
.++|+.|+++.
T Consensus 273 -~~~L~~L~Ls~ 283 (312)
T 1wwl_A 273 -PAKLSVLDLSY 283 (312)
T ss_dssp -CSEEEEEECCS
T ss_pred -cCCceEEECCC
Confidence 15677777766
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.80 E-value=3.2e-10 Score=103.35 Aligned_cols=61 Identities=18% Similarity=0.082 Sum_probs=26.6
Q ss_pred cccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeE
Q 013263 138 YTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI 199 (446)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 199 (446)
..+++|++|++.+|.+...+ .+..+++|++|+|+++.+..- ....+.++++|+.|.+.+|.
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETN 111 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSC
T ss_pred ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCC
Confidence 34455555555555443322 233445555555555544311 01123444555555554443
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.79 E-value=1.7e-09 Score=99.34 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=40.9
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEE
Q 013263 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (446)
++++|++..+.. ..++ .+..+++|++|++++|.+...+....+++|++|+|+++.+.+ +.. +..+++|+.|++.
T Consensus 47 ~L~~L~l~~~~i--~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECT
T ss_pred cccEEEccCCCc--ccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECC
Confidence 556665544331 2222 244456666666666655554445556666666666665552 111 4556666666665
Q ss_pred eeEe
Q 013263 197 GYIY 200 (446)
Q Consensus 197 ~~~~ 200 (446)
+|..
T Consensus 121 ~n~i 124 (291)
T 1h6t_A 121 HNGI 124 (291)
T ss_dssp TSCC
T ss_pred CCcC
Confidence 5543
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.78 E-value=4.1e-10 Score=104.54 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=56.1
Q ss_pred CcceEEEEecccCCcccHHHHHHHHHhCCceEEEEEecCCccccCCCcc--cccCcccEEEecceecccCCC------cc
Q 013263 89 NINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCI--YTCKTLEVLKLDMNFFIKTPP------TI 160 (446)
Q Consensus 89 ~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~~~------~~ 160 (446)
.++.+.+.... .....+..........++++|+++.+.. ....|..+ ..+++|++|+|++|.+..... ..
T Consensus 65 ~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 35555544321 2233344445544445677777765542 23344444 456677777777766554211 12
Q ss_pred CCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeE
Q 013263 161 FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI 199 (446)
Q Consensus 161 ~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 199 (446)
.+++|++|+|+++.+. ......+.++++|+.|+|.+|.
T Consensus 143 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp BCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCT
T ss_pred hccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCC
Confidence 4666666666666654 1112234556666666666653
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.78 E-value=5.5e-09 Score=92.95 Aligned_cols=101 Identities=6% Similarity=0.009 Sum_probs=52.4
Q ss_pred CceEEEEEecCCccccCCC-cccccCcccEEEeccee-cccCC--CccCCCCccEEEeee-EEeccchHHHHhccCCCcc
Q 013263 117 NVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNF-FIKTP--PTIFFPSAKILHVIL-NTIDNNFSDWLFSKCPALE 191 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-~~~~~--~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le 191 (446)
++++|+++.+.- ..+|. .+..+++|++|++.++. +...+ .+.++++|++|+|++ +.+..- -...+.++++|+
T Consensus 32 ~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCC
T ss_pred cccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCC
Confidence 566666665542 33443 34456677777777664 44332 334666777777766 444410 012345566677
Q ss_pred eEEEEeeEeCCCCceEEEeccCcc---eEEEeec
Q 013263 192 DLSIKGYIYGTDSVTLNIPSLTLK---RLRLELE 222 (446)
Q Consensus 192 ~L~L~~~~~~~~~~~~~i~~~~L~---~L~i~~~ 222 (446)
.|.+.+|.+.++ .. --..++|+ .|++.+|
T Consensus 109 ~L~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 109 FLGIFNTGLKMF-PD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEEEECCCSC-CC-CTTCCBCCSEEEEEEESC
T ss_pred EEeCCCCCCccc-cc-cccccccccccEEECCCC
Confidence 777766654443 21 00124444 6666655
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.77 E-value=5.1e-10 Score=101.67 Aligned_cols=106 Identities=15% Similarity=0.051 Sum_probs=69.4
Q ss_pred CcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEE-EeccCcceEEE
Q 013263 141 KTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN-IPSLTLKRLRL 219 (446)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~-i~~~~L~~L~i 219 (446)
.+.+++++.++.+...|... .++|++|+|+++.+..- -...+.++++|+.|.+.+|.+..+ ..-. -..++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEEC
Confidence 35889999998887755422 36899999999988721 122467899999999999865443 1111 12478889988
Q ss_pred eeccCcccccCceEEEEecccceeEEeeccCCc
Q 013263 220 ELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG 252 (446)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~ 252 (446)
..|....... ......++|++|.+.++...
T Consensus 93 ~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 93 TDNKLQALPI---GVFDQLVNLAELRLDRNQLK 122 (270)
T ss_dssp CSSCCCCCCT---TTTTTCSSCCEEECCSSCCC
T ss_pred CCCcCCcCCH---hHcccccCCCEEECCCCccC
Confidence 8886542110 01123467777777766543
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.76 E-value=1e-09 Score=99.97 Aligned_cols=208 Identities=15% Similarity=0.094 Sum_probs=131.1
Q ss_pred cccCCCcccccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceE
Q 013263 130 CIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL 207 (446)
Q Consensus 130 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~ 207 (446)
...+|..+. ++|++|+++++.+...+ .+..+++|++|+|+++.+..- ....+.++++|+.|.+.+|...+. ..-
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~ 94 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSL-ALG 94 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEE-CTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCcc-Chh
Confidence 455666543 57999999999877643 456889999999999987621 122467889999999988754322 111
Q ss_pred EE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce----EEeCCCCceEEEEEEeeeeecCCCCchh
Q 013263 208 NI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY----VVHELHSLTKAVVDYGIECILDYDSPED 282 (446)
Q Consensus 208 ~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~~~~~ 282 (446)
.+ ..++|+.|.+..|....... ......++|++|.+.++..... .+.++++|+.+++....-..
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-------- 163 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-------- 163 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTT---CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE--------
T ss_pred hhcCCccccEEECCCCCccccCc---hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc--------
Confidence 11 24789999998886543211 1123468999999988765432 35678899998887653211
Q ss_pred hHHHHHHHHhcCCCee-EEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecc
Q 013263 283 VAQAVVDMLRDIKNIK-SLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEG 361 (446)
Q Consensus 283 ~~~~~~~~l~~l~~l~-~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 361 (446)
........+..++.+. .|.++.+.+..+. ... ....+|+.|+++.+.-... ...++..+++|+.|++...
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~------~~~-~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ------PGA-FKEIRLKELALDTNQLKSV--PDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEEC------TTS-SCSCCEEEEECCSSCCSCC--CTTTTTTCCSCCEEECCSS
T ss_pred CCHHHhhhhhhccccceeeecCCCcccccC------ccc-cCCCcccEEECCCCceeec--CHhHhcccccccEEEccCC
Confidence 0001112233444444 7888888776443 111 1223788888887653111 1235678999999999874
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.75 E-value=1e-09 Score=104.18 Aligned_cols=211 Identities=12% Similarity=0.113 Sum_probs=105.7
Q ss_pred cCcccEEEecceecccCCC------ccCCC-CccEEEeeeEEeccc---hHHHHhccC-CCcceEEEEeeEeCCCCceEE
Q 013263 140 CKTLEVLKLDMNFFIKTPP------TIFFP-SAKILHVILNTIDNN---FSDWLFSKC-PALEDLSIKGYIYGTDSVTLN 208 (446)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~------~~~l~-~L~~L~L~~~~~~~~---~l~~ll~~c-p~Le~L~L~~~~~~~~~~~~~ 208 (446)
.++|++|+|++|.+...+. +..++ +|++|+|+++.+.+. .+..++..+ ++|++|+|.+|...+. ....
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK-SSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH-HHHH
Confidence 4446666666666655321 22455 666777766666532 233333333 6677777766653322 1110
Q ss_pred E----e-c-cCcceEEEeeccCcccccCceEEE--E-e-cccceeEEeeccCCcceE-------EeCCC-CceEEEEEEe
Q 013263 209 I----P-S-LTLKRLRLELEAPEEDYITKYKVI--I-R-APNLEQLYIRDHGPGLYV-------VHELH-SLTKAVVDYG 270 (446)
Q Consensus 209 i----~-~-~~L~~L~i~~~~~~~~~~~~~~~~--~-~-~p~L~~L~l~~~~~~~~~-------~~~~~-~L~~~~l~~~ 270 (446)
+ . . ++|+.|+++.|..... ....+. + . .++|++|++.++...... +...+ +|+.+++..+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSK--SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGS--CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHhCCCCccEEECcCCcCCcH--HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 1 1 1 5666666666654321 000000 0 0 136666666665433111 12233 5666655543
Q ss_pred eeeecCCCCchhhHHHHHHHHhcCC-CeeEEEEeCCccccccccccccCCCCCC-CCccceEEEEeccc--ccHHHHHHH
Q 013263 271 IECILDYDSPEDVAQAVVDMLRDIK-NIKSLSLSSGTMFALDRLDYANDHSFPT-FPFLNRLEVEGVGA--CGWLSLAHI 346 (446)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~L~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~--~~~~~l~~l 346 (446)
.- . ......+...+..++ +++.|.|+.+.+..... ... ...+.. .++|+.|+|+.+.- .....+..+
T Consensus 178 ~l-~------~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 178 NL-A------SKNCAELAKFLASIPASVTSLDLSANLLGLKSY-AEL-AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248 (362)
T ss_dssp CG-G------GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-HHH-HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred CC-c------hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-HHH-HHHHhcCCCCceEEECcCCCCCcHHHHHHHHH
Confidence 21 0 122234555666664 88888888776553110 000 011111 24788888877643 233455666
Q ss_pred HhhCCCCceEEEeccc
Q 013263 347 FSRMPKLESIVFEEGV 362 (446)
Q Consensus 347 l~~~p~L~~L~i~~~~ 362 (446)
+..+++|+.|+++.+.
T Consensus 249 ~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTTTTTCSEEEEEHHH
T ss_pred HhcCCCccEEEeccCC
Confidence 6777888888887753
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.75 E-value=2.4e-10 Score=117.99 Aligned_cols=225 Identities=16% Similarity=0.087 Sum_probs=113.9
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceeccc--CC--Ccc--CCCCccEEEeeeEEeccchHHHHhccCCC
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIK--TP--PTI--FFPSAKILHVILNTIDNNFSDWLFSKCPA 189 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~--~~--~~~--~l~~L~~L~L~~~~~~~~~l~~ll~~cp~ 189 (446)
.++++|++..+.. ....|..+..+++|++|++++|.+.. .+ .+. ..++|++|+|+++.+..- ....+.++++
T Consensus 329 ~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~ 406 (680)
T 1ziw_A 329 KCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI-ESDAFSWLGH 406 (680)
T ss_dssp TTCCEEECCSCCB-CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE-CTTTTTTCTT
T ss_pred CCCCEEECCCCcc-CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE-ChhhhhCCCC
Confidence 5789999876542 12233445668889999988775321 11 111 235777777777766511 1233556777
Q ss_pred cceEEEEeeEeCC-CCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCc-----ceEEeCCCCc
Q 013263 190 LEDLSIKGYIYGT-DSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG-----LYVVHELHSL 262 (446)
Q Consensus 190 Le~L~L~~~~~~~-~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~-----~~~~~~~~~L 262 (446)
|+.|.+.+|...+ + ....+ ..++|+.|+++.|........ .....|+|++|.+.++... ...+.++++|
T Consensus 407 L~~L~L~~N~l~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 407 LEVLDLGLNEIGQEL-TGQEWRGLENIFEIYLSYNKYLQLTRN---SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp CCEEECCSSCCEEEC-CSGGGTTCTTCCEEECCSCSEEECCTT---TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCEEeCCCCcCcccc-CcccccCcccccEEecCCCCcceeChh---hhhcCcccccchhccccccccccCCcccccCCCC
Confidence 7777777764221 0 00011 236677777777643211000 0113466777777654332 1124456667
Q ss_pred eEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccc--cCCCCCCCCccceEEEEecccccH
Q 013263 263 TKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYA--NDHSFPTFPFLNRLEVEGVGACGW 340 (446)
Q Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~ 340 (446)
+.+++....-.. . ....+..+++++.|.++++.+..+...... ....+..+++|+.|+++.+.-.
T Consensus 483 ~~L~Ls~N~l~~-i----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-- 549 (680)
T 1ziw_A 483 TILDLSNNNIAN-I----------NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-- 549 (680)
T ss_dssp CEEECCSSCCCC-C----------CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--
T ss_pred CEEECCCCCCCc-C----------ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC--
Confidence 766665432100 0 012245666777777776655443210000 0011334556666666654321
Q ss_pred HHHH-HHHhhCCCCceEEEec
Q 013263 341 LSLA-HIFSRMPKLESIVFEE 360 (446)
Q Consensus 341 ~~l~-~ll~~~p~L~~L~i~~ 360 (446)
.++ ..+..+++|+.|+++.
T Consensus 550 -~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 550 -EIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp -CCCTTTTTTCTTCCEEECCS
T ss_pred -CCCHHHcccccCcceeECCC
Confidence 111 2345666677776655
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.74 E-value=2.8e-09 Score=94.88 Aligned_cols=90 Identities=13% Similarity=0.100 Sum_probs=58.7
Q ss_pred ccCCCcccccCcccEEEecceecccCC--CccCCCCccEEEeeeEE-eccchHHHHhccCCCcceEEEEe-eEeCCCCce
Q 013263 131 IELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNT-IDNNFSDWLFSKCPALEDLSIKG-YIYGTDSVT 206 (446)
Q Consensus 131 ~~lp~~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~-~~~~~~~~~ 206 (446)
..+|. + .++|++|++.++.+...+ .+.++++|++|+|+++. +.. --...+.++++|+.|.+.+ +....+ ..
T Consensus 24 ~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i-~~ 98 (239)
T 2xwt_C 24 QRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYI-DP 98 (239)
T ss_dssp SSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEE-CT
T ss_pred cccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEc-CH
Confidence 44555 2 348899999998877643 35578999999999886 541 1112357889999999987 433322 11
Q ss_pred -EEEeccCcceEEEeeccCc
Q 013263 207 -LNIPSLTLKRLRLELEAPE 225 (446)
Q Consensus 207 -~~i~~~~L~~L~i~~~~~~ 225 (446)
.--..++|+.|++.+|...
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp TSEECCTTCCEEEEEEECCC
T ss_pred HHhCCCCCCCEEeCCCCCCc
Confidence 1113478888888887654
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.72 E-value=1.7e-09 Score=93.25 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=58.2
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEE
Q 013263 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (446)
++++|++..+.. ..+| .+..+++|++|++.+|.+...+.+..+++|++|+|+++.+.+... ..+..+|+|+.|.+.
T Consensus 45 ~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEECC
T ss_pred CccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEEec
Confidence 567777765542 2444 455667777777777766554555567777777777766652222 224566777777777
Q ss_pred eeEeCCCCceEEE-eccCcceEEEeecc
Q 013263 197 GYIYGTDSVTLNI-PSLTLKRLRLELEA 223 (446)
Q Consensus 197 ~~~~~~~~~~~~i-~~~~L~~L~i~~~~ 223 (446)
+|.+.+. ..-.+ ..++|+.|+++.|.
T Consensus 121 ~n~i~~~-~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 121 HSAHDDS-ILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp SSBCBGG-GHHHHTTCSSCCEEECCSCT
T ss_pred CCccCcH-hHHHHhhCCCCCEEEccCCC
Confidence 6654321 11111 13566666666664
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.71 E-value=1.2e-08 Score=87.87 Aligned_cols=61 Identities=18% Similarity=0.046 Sum_probs=48.6
Q ss_pred cccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeC
Q 013263 138 YTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYG 201 (446)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~ 201 (446)
..+++|++|++.++.+...+....+++|++|+++++.+..- . .+..+++|+.|.+.+|.+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCB
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccC
Confidence 45789999999999888777778899999999999866522 1 3667899999999887543
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.70 E-value=6e-10 Score=101.32 Aligned_cols=151 Identities=16% Similarity=0.120 Sum_probs=101.0
Q ss_pred CCcceEEEEecccCCcccHHHHHHHHHhCCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCC--ccCCCCc
Q 013263 88 GNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSA 165 (446)
Q Consensus 88 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L 165 (446)
..++.+.+....-..... .....++++|+++.+.. ..+ ..+..+++|++|++.+|.+...+. +..+++|
T Consensus 41 ~~L~~L~l~~~~i~~~~~------l~~l~~L~~L~l~~n~l--~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG------IQYLPNVRYLALGGNKL--HDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp TTCCEEECTTSCCCCCTT------GGGCTTCCEEECTTSCC--CCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cceeeeeeCCCCcccccc------cccCCCCcEEECCCCCC--CCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 446666665433111111 12345899999976653 223 356779999999999998887544 5689999
Q ss_pred cEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeE
Q 013263 166 KILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQL 244 (446)
Q Consensus 166 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L 244 (446)
++|+|+++.+. +.....+.++++|+.|.+.+|.+.++ ..-.+ ..++|+.|++..|...+... ...-..++|+.|
T Consensus 112 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L 186 (272)
T 3rfs_A 112 KELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSL-PKGVFDKLTNLTELDLSYNQLQSLPE---GVFDKLTQLKDL 186 (272)
T ss_dssp CEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEE
T ss_pred CEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCcc-CHHHhccCccCCEEECCCCCcCccCH---HHhcCCccCCEE
Confidence 99999999887 22223467899999999999875544 22112 35899999999997653211 111235788888
Q ss_pred EeeccCCc
Q 013263 245 YIRDHGPG 252 (446)
Q Consensus 245 ~l~~~~~~ 252 (446)
++.++...
T Consensus 187 ~L~~N~l~ 194 (272)
T 3rfs_A 187 RLYQNQLK 194 (272)
T ss_dssp ECCSSCCS
T ss_pred ECCCCcCC
Confidence 88876543
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.69 E-value=4e-10 Score=108.01 Aligned_cols=234 Identities=18% Similarity=0.104 Sum_probs=139.0
Q ss_pred CCceEEEEEecCC---ccccCCCcccccCcccEEEecceecccC----C-C-------ccCCCCccEEEeeeEEeccc--
Q 013263 116 RNVREIEISLNDD---ECIELPHCIYTCKTLEVLKLDMNFFIKT----P-P-------TIFFPSAKILHVILNTIDNN-- 178 (446)
Q Consensus 116 ~~l~~L~l~~~~~---~~~~lp~~l~~~~~L~~L~L~~~~~~~~----~-~-------~~~l~~L~~L~L~~~~~~~~-- 178 (446)
+++++|+|+.+.. ....++..+..+++|++|+|++|.+... | . +..+++|++|+|+++.+.+.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 4677777754421 1112333455677888888877644321 1 1 13678888888888877743
Q ss_pred -hHHHHhccCCCcceEEEEeeEeCCCCceEEEe-----c---------cCcceEEEeeccCcccccCce---EEEEeccc
Q 013263 179 -FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-----S---------LTLKRLRLELEAPEEDYITKY---KVIIRAPN 240 (446)
Q Consensus 179 -~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~-----~---------~~L~~L~i~~~~~~~~~~~~~---~~~~~~p~ 240 (446)
.+...+..|++|+.|.|.+|.+... ....+. . ++|++|.+++|..... +.. ......++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG--SMKEWAKTFQSHRL 188 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHH-HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG--GHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHH-HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH--HHHHHHHHHHhCCC
Confidence 3445567788888888887753211 111111 1 6888888887765411 001 11124568
Q ss_pred ceeEEeeccCCcce--------EEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccc
Q 013263 241 LEQLYIRDHGPGLY--------VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDR 312 (446)
Q Consensus 241 L~~L~l~~~~~~~~--------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~ 312 (446)
|++|.+.++..... .+..+++|+.+++..+.- . ......+...+..+++|+.|.|+++.+.....
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l-~------~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-T------HLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-H------HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC-C------cHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 88888887765411 345678888888765421 0 11124556678889999999999887643210
Q ss_pred cccccCCCCC--CCCccceEEEEecccccHH---HHHHHH-hhCCCCceEEEeccc
Q 013263 313 LDYANDHSFP--TFPFLNRLEVEGVGACGWL---SLAHIF-SRMPKLESIVFEEGV 362 (446)
Q Consensus 313 ~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~---~l~~ll-~~~p~L~~L~i~~~~ 362 (446)
......+. .+++|++|+|+.+.- ... .++..+ .++|+|+.|++..+.
T Consensus 262 --~~l~~~l~~~~~~~L~~L~L~~n~i-~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 262 --AAVVDAFSKLENIGLQTLRLQYNEI-ELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp --HHHHHHHHTCSSCCCCEEECCSSCC-BHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred --HHHHHHHhhccCCCeEEEECcCCcC-CHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 00011121 267899999988764 332 344444 668999999998743
No 90
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.67 E-value=2.7e-09 Score=89.33 Aligned_cols=134 Identities=22% Similarity=0.088 Sum_probs=92.5
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++++|+++.+......+|..+..+++|++|++.+|.+.....+..+++|++|+|+++.+... +..++.++++|+.|.+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence 468899887765322477877778999999999999887766666889999999999988732 5566777999999999
Q ss_pred EeeEeCCCCce-EEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCC
Q 013263 196 KGYIYGTDSVT-LNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (446)
Q Consensus 196 ~~~~~~~~~~~-~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (446)
.+|.+.++ .. -.+ ..++|+.|++..|................|+|++|++.++..
T Consensus 103 s~N~l~~~-~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDI-STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSS-GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcc-hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 99876554 21 112 247888888888765432100001122456777777766544
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.66 E-value=3.6e-09 Score=106.85 Aligned_cols=166 Identities=18% Similarity=0.126 Sum_probs=88.1
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++++|++..+.. ..+| .+..+++|++|+|++|.+...+.+..+++|+.|+|+++.+..- . .+..+++|+.|.|
T Consensus 43 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCC--CCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCC--CCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEe
Confidence 3566666654431 2233 3555677777777777666555556677777777777666521 1 2456667777776
Q ss_pred EeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeec
Q 013263 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECIL 275 (446)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~ 275 (446)
.+|.+.++ ..+ ...++|+.|.++.|..... ..+..+++|+.+++..+.-
T Consensus 117 s~N~l~~l-~~l-~~l~~L~~L~Ls~N~l~~l--------------------------~~l~~l~~L~~L~Ls~N~l--- 165 (605)
T 1m9s_A 117 EHNGISDI-NGL-VHLPQLESLYLGNNKITDI--------------------------TVLSRLTKLDTLSLEDNQI--- 165 (605)
T ss_dssp TTSCCCCC-GGG-GGCTTCSEEECCSSCCCCC--------------------------GGGGSCTTCSEEECCSSCC---
T ss_pred cCCCCCCC-ccc-cCCCccCEEECCCCccCCc--------------------------hhhcccCCCCEEECcCCcC---
Confidence 66654433 110 0124555555555533211 1123344555544433311
Q ss_pred CCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecc
Q 013263 276 DYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG 336 (446)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 336 (446)
.. . .. +..+++|+.|.|+.+.+..+. .+..+++|+.|+|..+.
T Consensus 166 -~~--~------~~-l~~l~~L~~L~Ls~N~i~~l~--------~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 166 -SD--I------VP-LAGLTKLQNLYLSKNHISDLR--------ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -CC--C------GG-GTTCTTCCEEECCSSCCCBCG--------GGTTCTTCSEEECCSEE
T ss_pred -CC--c------hh-hccCCCCCEEECcCCCCCCCh--------HHccCCCCCEEEccCCc
Confidence 00 0 01 567778888888777654321 23456777888777653
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.64 E-value=1.5e-09 Score=103.04 Aligned_cols=232 Identities=9% Similarity=0.026 Sum_probs=121.4
Q ss_pred CceEEEEEecCCccccCC-----CcccccC-cccEEEecceecccCC--CccC-----CCCccEEEeeeEEecc---chH
Q 013263 117 NVREIEISLNDDECIELP-----HCIYTCK-TLEVLKLDMNFFIKTP--PTIF-----FPSAKILHVILNTIDN---NFS 180 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp-----~~l~~~~-~L~~L~L~~~~~~~~~--~~~~-----l~~L~~L~L~~~~~~~---~~l 180 (446)
++++|+++.+.- ...+ ..+..++ +|++|+|++|.+.... .+.. +++|++|+|+++.+.+ ..+
T Consensus 23 ~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 466666655431 2222 2233455 6777777777665521 1112 2677777777777652 233
Q ss_pred HHHhccC-CCcceEEEEeeEeCCCCceEEE----e--ccCcceEEEeeccCcccccC-ceEEEEec-ccceeEEeeccCC
Q 013263 181 DWLFSKC-PALEDLSIKGYIYGTDSVTLNI----P--SLTLKRLRLELEAPEEDYIT-KYKVIIRA-PNLEQLYIRDHGP 251 (446)
Q Consensus 181 ~~ll~~c-p~Le~L~L~~~~~~~~~~~~~i----~--~~~L~~L~i~~~~~~~~~~~-~~~~~~~~-p~L~~L~l~~~~~ 251 (446)
...+..+ ++|+.|++.+|.+.+. ....+ . .++|++|++++|........ ........ ++|++|++.++..
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSK-SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCcCCcH-HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 4444555 6777777777654332 11111 1 24677777777654321000 00000112 3777777777654
Q ss_pred cceE-------EeCC-CCceEEEEEEeeeeecCCCCchhhHHHHHHHHhc-CCCeeEEEEeCCccccccccccccCCCCC
Q 013263 252 GLYV-------VHEL-HSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD-IKNIKSLSLSSGTMFALDRLDYANDHSFP 322 (446)
Q Consensus 252 ~~~~-------~~~~-~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~L~~~~~~~~~~~~~~~~~~~~ 322 (446)
.... +... ++|+.++++.+.- . ......+...+.. .++++.|.|+++.+..... ......+.
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i-~------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l~~~~~ 250 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLL-G------LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL--ENLKLLKD 250 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCG-G------GSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH--HHHHHTTT
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCC-C------hhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH--HHHHHHHh
Confidence 3221 2334 3777777765431 0 1112234555555 4599999999987654321 00012335
Q ss_pred CCCccceEEEEecc--cccHHHHHHHHhhCCC---CceEEEec
Q 013263 323 TFPFLNRLEVEGVG--ACGWLSLAHIFSRMPK---LESIVFEE 360 (446)
Q Consensus 323 ~~~~L~~L~L~~~~--~~~~~~l~~ll~~~p~---L~~L~i~~ 360 (446)
.+++|+.|+++.+. ......+..+...+++ |+.|++++
T Consensus 251 ~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 67789999999875 2355556666655555 44555544
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.62 E-value=1.6e-08 Score=92.77 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=73.5
Q ss_pred ccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEe-ccCcceE
Q 013263 139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKRL 217 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~-~~~L~~L 217 (446)
.+++|++|++.++.+...+....+++|++|+|+++.+.+- .. +.++++|+.|.+.+|...++ .. +. .++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDL-SS--LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCG-GG--GTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCC-hh--hccCCCCCEE
Confidence 4788899999988887777777888999999998888722 12 67888999999988875554 22 22 4788889
Q ss_pred EEeeccCcccccCceEEEEecccceeEEeeccCCc
Q 013263 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG 252 (446)
Q Consensus 218 ~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~ 252 (446)
+++.|..... ......++|+.|++.++...
T Consensus 118 ~L~~n~i~~~-----~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 118 SLEHNGISDI-----NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp ECTTSCCCCC-----GGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC-----hhhcCCCCCCEEEccCCcCC
Confidence 8888866532 11124577888888776543
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.61 E-value=6e-09 Score=95.59 Aligned_cols=206 Identities=14% Similarity=0.136 Sum_probs=110.9
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccC--CCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEE
Q 013263 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (446)
.++++++.... ...+|..+. +++++|+|.++.+... ..+..+++|++|+|+++.+..-.. ...+++|+.|.
T Consensus 11 ~l~~l~~~~~~--l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~ 83 (290)
T 1p9a_G 11 SHLEVNCDKRN--LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD 83 (290)
T ss_dssp TCCEEECTTSC--CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEE
T ss_pred CccEEECCCCC--CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEE
Confidence 34555443332 334554443 5667777776665443 134456677777777666651110 14566777777
Q ss_pred EEeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceE---EeCCCCceEEEEEEee
Q 013263 195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGI 271 (446)
Q Consensus 195 L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~ 271 (446)
+.+|.+..+ ....-..++|+.|.++.|....... ...-..++|++|.+.++...... +..+++|+.+++....
T Consensus 84 Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 84 LSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPL---GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp CCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCS---STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCcCCcC-chhhccCCCCCEEECCCCcCcccCH---HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 766654433 1111123567777776665432100 01113467777777766544332 3456667776665432
Q ss_pred eeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecc---cccHHHHHHHHh
Q 013263 272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG---ACGWLSLAHIFS 348 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~---~~~~~~l~~ll~ 348 (446)
-.. . ....+..+++++.|.++.+.+..++ ..+....+|+.|.|..+. .+...++...++
T Consensus 160 l~~-l----------~~~~~~~l~~L~~L~L~~N~l~~ip-------~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~ 221 (290)
T 1p9a_G 160 LTE-L----------PAGLLNGLENLDTLLLQENSLYTIP-------KGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221 (290)
T ss_dssp CSC-C----------CTTTTTTCTTCCEEECCSSCCCCCC-------TTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred CCc-c----------CHHHhcCcCCCCEEECCCCcCCccC-------hhhcccccCCeEEeCCCCccCcCccHHHHHHHH
Confidence 100 0 0133567889999999988777544 222345578888888643 235556666666
Q ss_pred hCC
Q 013263 349 RMP 351 (446)
Q Consensus 349 ~~p 351 (446)
.-+
T Consensus 222 ~~~ 224 (290)
T 1p9a_G 222 DNA 224 (290)
T ss_dssp HTG
T ss_pred hCc
Confidence 544
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.59 E-value=2.6e-08 Score=89.94 Aligned_cols=103 Identities=23% Similarity=0.206 Sum_probs=69.7
Q ss_pred ccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCcce
Q 013263 137 IYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (446)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~ 216 (446)
+..+++|++|++.++.+...+....+++|++|+|+++.+.+- .. +.++++|+.|.+.+|...++ ..+. .++|+.
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~l-~~~~--~~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKNL-NGIP--SACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSCC-TTCC--CSSCCE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCCc-Cccc--cCcccE
Confidence 456788899999988887777777888999999998888722 11 67889999999988876554 2222 177888
Q ss_pred EEEeeccCcccccCceEEEEecccceeEEeeccC
Q 013263 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG 250 (446)
Q Consensus 217 L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 250 (446)
|.+++|...+. . .....++|+.|++.++.
T Consensus 111 L~L~~N~l~~~----~-~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 111 LFLDNNELRDT----D-SLIHLKNLEILSIRNNK 139 (263)
T ss_dssp EECCSSCCSBS----G-GGTTCTTCCEEECTTSC
T ss_pred EEccCCccCCC----h-hhcCcccccEEECCCCc
Confidence 88877765421 0 01134556666655543
No 96
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.58 E-value=2.4e-08 Score=97.65 Aligned_cols=135 Identities=18% Similarity=0.136 Sum_probs=73.6
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEE
Q 013263 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (446)
++++|+++.+.- ..+| .+..+++|++|++++|.+...|. ..++|++|+++++.+.. +. -+.++++|+.|.+.
T Consensus 132 ~L~~L~L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Cc-cccCCCCCCEEECC
Confidence 566666655442 2355 35566777777777776655333 23577777777766652 11 14567777777777
Q ss_pred eeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEE
Q 013263 197 GYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDY 269 (446)
Q Consensus 197 ~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~ 269 (446)
+|.+.++ .. ..++|+.|++.+|..... .. ....++|++|++.++...... ...++|+.+++..
T Consensus 204 ~N~l~~l-~~---~~~~L~~L~l~~n~l~~l----p~-~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l~~ 266 (454)
T 1jl5_A 204 NNSLKKL-PD---LPLSLESIVAGNNILEEL----PE-LQNLPFLTTIYADNNLLKTLP-DLPPSLEALNVRD 266 (454)
T ss_dssp SSCCSSC-CC---CCTTCCEEECCSSCCSSC----CC-CTTCTTCCEEECCSSCCSSCC-SCCTTCCEEECCS
T ss_pred CCcCCcC-CC---CcCcccEEECcCCcCCcc----cc-cCCCCCCCEEECCCCcCCccc-ccccccCEEECCC
Confidence 7654433 11 124677777776654321 11 124566677766665443321 1235566655543
No 97
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.56 E-value=2.9e-08 Score=97.01 Aligned_cols=197 Identities=15% Similarity=0.068 Sum_probs=94.7
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEecc--c---------------
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDN--N--------------- 178 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~--------------- 178 (446)
.++++|+++.+.. ..+|..+ .+|++|++++|.+...|.+..+++|++|+++++.+.. .
T Consensus 153 ~~L~~L~l~~N~l--~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 153 SFLKIIDVDNNSL--KKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 227 (454)
T ss_dssp TTCCEEECCSSCC--SCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCcC--cccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcC
Confidence 3566666655432 2233322 3555666655555544444455555555555554431 0
Q ss_pred -hHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEe
Q 013263 179 -FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVH 257 (446)
Q Consensus 179 -~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~ 257 (446)
.+.. +.++++|+.|.+.+|.+.++ .. ..++|+.|++..|...+. ....++|++|++.++...... .
T Consensus 228 ~~lp~-~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l-------~~~~~~L~~L~ls~N~l~~l~-~ 294 (454)
T 1jl5_A 228 EELPE-LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDL-------PELPQSLTFLDVSENIFSGLS-E 294 (454)
T ss_dssp SSCCC-CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCC-------CCCCTTCCEEECCSSCCSEES-C
T ss_pred Ccccc-cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccccc-------CcccCcCCEEECcCCccCccc-C
Confidence 1111 33455555555555443322 11 124555555555543321 011255666666555443311 1
Q ss_pred CCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcC-CCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecc
Q 013263 258 ELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDI-KNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG 336 (446)
Q Consensus 258 ~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 336 (446)
-.++|+.+++....-. . +..+ ++++.|.++.+.+..++ ..+++|+.|+++.+.
T Consensus 295 ~~~~L~~L~l~~N~l~---------------~-i~~~~~~L~~L~Ls~N~l~~lp----------~~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIR---------------S-LCDLPPSLEELNVSNNKLIELP----------ALPPRLERLIASFNH 348 (454)
T ss_dssp CCTTCCEEECCSSCCS---------------E-ECCCCTTCCEEECCSSCCSCCC----------CCCTTCCEEECCSSC
T ss_pred cCCcCCEEECcCCcCC---------------c-ccCCcCcCCEEECCCCcccccc----------ccCCcCCEEECCCCc
Confidence 1245555555433110 0 1122 46777777766554322 235788888887764
Q ss_pred cccHHHHHHHHhhCCCCceEEEeccc
Q 013263 337 ACGWLSLAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 337 ~~~~~~l~~ll~~~p~L~~L~i~~~~ 362 (446)
-.. ++. .+++|+.|++..+.
T Consensus 349 l~~---lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 349 LAE---VPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CSC---CCC---CCTTCCEEECCSSC
T ss_pred ccc---ccc---hhhhccEEECCCCC
Confidence 321 222 46788888887744
No 98
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.55 E-value=2.6e-09 Score=87.53 Aligned_cols=108 Identities=19% Similarity=0.112 Sum_probs=79.2
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++++|+++.+.-....+|..+..+++|++|++.+|.+.....+..+++|++|+|+++.+... +...+.++++|+.|.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence 368888887665322467777778999999999999887766667889999999999988832 5666778999999999
Q ss_pred EeeEeCCCCce-EEE-eccCcceEEEeeccCc
Q 013263 196 KGYIYGTDSVT-LNI-PSLTLKRLRLELEAPE 225 (446)
Q Consensus 196 ~~~~~~~~~~~-~~i-~~~~L~~L~i~~~~~~ 225 (446)
.+|.+.++ .. -.+ ..++|++|++++|...
T Consensus 96 s~N~i~~~-~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 96 SGNKIKDL-STIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TTSCCCSH-HHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCcCCCh-HHHHHHhhCCCCCEEeCcCCccc
Confidence 98875543 11 111 2367777777777554
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.55 E-value=2.1e-08 Score=89.88 Aligned_cols=184 Identities=16% Similarity=0.144 Sum_probs=96.2
Q ss_pred ceEEEEEecCCccccCCCcccccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 118 VREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 118 l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.+++++.... ...+|..+. ++|++|+|.++.+...+ .+..+++|++|+|+++.+.. .....+.++++|+.|.|
T Consensus 16 ~~~l~~~~~~--l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQGKS--LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GTEEECTTCC--CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred CeEEecCCCC--ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEEC
Confidence 4445443332 345665443 57888888887776543 34567888888888877762 11233566778888888
Q ss_pred EeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeee
Q 013263 196 KGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECI 274 (446)
Q Consensus 196 ~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~ 274 (446)
.+|.+..+ ..-.+ ..++|+.|+++.|........ .....++|+.|++.++......
T Consensus 91 ~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~------------------- 147 (251)
T 3m19_A 91 ANNQLASL-PLGVFDHLTQLDKLYLGGNQLKSLPSG---VFDRLTKLKELRLNTNQLQSIP------------------- 147 (251)
T ss_dssp TTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCC-------------------
T ss_pred CCCccccc-ChhHhcccCCCCEEEcCCCcCCCcChh---HhccCCcccEEECcCCcCCccC-------------------
Confidence 77654433 11011 125566666665543311000 0011344444444443221110
Q ss_pred cCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEeccc----ccHHHHHHHHh
Q 013263 275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA----CGWLSLAHIFS 348 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~----~~~~~l~~ll~ 348 (446)
...+..+++++.|.|+.+.+..+. ...+..+++|+.|++..+.. +....+...++
T Consensus 148 -------------~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~ 206 (251)
T 3m19_A 148 -------------AGAFDKLTNLQTLSLSTNQLQSVP------HGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIR 206 (251)
T ss_dssp -------------TTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred -------------HHHcCcCcCCCEEECCCCcCCccC------HHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHH
Confidence 012456677778887777665433 23344566777777765432 23444444444
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.50 E-value=1.3e-07 Score=94.65 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=106.9
Q ss_pred hCCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEE
Q 013263 115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (446)
Q Consensus 115 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (446)
..+++.|+++.+.- ..+|..++ ++|++|+|++|.+...| ..+++|++|+|+++.+.. +.. +. .+|+.|.
T Consensus 58 ~~~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~ 126 (571)
T 3cvr_A 58 INQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLD 126 (571)
T ss_dssp HTTCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEE
T ss_pred cCCccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEE
Confidence 34677777765542 34666553 67888888877777655 556778888888777662 222 22 2777887
Q ss_pred EEeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeee
Q 013263 195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECI 274 (446)
Q Consensus 195 L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~ 274 (446)
|.+|.+.++ .. ..++|+.|++++|...+. .. ..++|++|.+.++....++.- .++|+.+++..+.- .
T Consensus 127 Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l----p~---~l~~L~~L~Ls~N~L~~lp~l-~~~L~~L~Ls~N~L-~ 193 (571)
T 3cvr_A 127 VDNNQLTML-PE---LPALLEYINADNNQLTML----PE---LPTSLEVLSVRNNQLTFLPEL-PESLEALDVSTNLL-E 193 (571)
T ss_dssp CCSSCCSCC-CC---CCTTCCEEECCSSCCSCC----CC---CCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCC-S
T ss_pred CCCCcCCCC-CC---cCccccEEeCCCCccCcC----CC---cCCCcCEEECCCCCCCCcchh-hCCCCEEECcCCCC-C
Confidence 777765554 22 457777777777765431 11 356777777777654432221 16677666654421 0
Q ss_pred cCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEeccc
Q 013263 275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA 337 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 337 (446)
. ...... .+....+.++.|.|+++.+..++ ..+..+++|+.|+|+.+..
T Consensus 194 ---~--lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp-------~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 194 ---S--LPAVPV--RNHHSEETEIFFRCRENRITHIP-------ENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ---S--CCCCC----------CCEEEECCSSCCCCCC-------GGGGGSCTTEEEECCSSSC
T ss_pred ---c--hhhHHH--hhhcccccceEEecCCCcceecC-------HHHhcCCCCCEEEeeCCcC
Confidence 0 000000 12223344499999988776544 2223477899999887753
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.48 E-value=5.7e-08 Score=89.94 Aligned_cols=202 Identities=11% Similarity=0.014 Sum_probs=116.4
Q ss_pred CCcceEEEEeccc--CCcccHHHHHHHHHhCCceEEEEEecCCccccCC----CcccccCcccEEEecceecccCC--Cc
Q 013263 88 GNINKFSLRCCGL--VDSSRLKLWVSFATMRNVREIEISLNDDECIELP----HCIYTCKTLEVLKLDMNFFIKTP--PT 159 (446)
Q Consensus 88 ~~v~~l~l~~~~~--~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp----~~l~~~~~L~~L~L~~~~~~~~~--~~ 159 (446)
..++.+.+....- ..+..+.. ....++++|+++.+... ...+ ..+..+++|++|+|++|.+...+ .+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~----~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 165 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLE----ATGLALSSLRLRNVSWA-TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV 165 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSS----CCCBCCSSCEEESCCCS-STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred CceeEEEeeCCEeccchhhhhhh----ccCCCCCEEEeeccccc-chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence 3488888875541 11111000 12346888888766531 1112 12345788888888888776543 34
Q ss_pred cCCCCccEEEeeeEEec-cchHH--HHhccCCCcceEEEEeeEeCCCCceE----EEeccCcceEEEeeccCcccccCce
Q 013263 160 IFFPSAKILHVILNTID-NNFSD--WLFSKCPALEDLSIKGYIYGTDSVTL----NIPSLTLKRLRLELEAPEEDYITKY 232 (446)
Q Consensus 160 ~~l~~L~~L~L~~~~~~-~~~l~--~ll~~cp~Le~L~L~~~~~~~~~~~~----~i~~~~L~~L~i~~~~~~~~~~~~~ 232 (446)
..+++|++|+|+++.+. ...+. ..+..+|+|++|.+.+|....+ ... .-..++|++|+++.|...+......
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 47888888888888765 22222 1135678888888888765433 211 0123788888888886653200000
Q ss_pred EEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccc
Q 013263 233 KVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMF 308 (446)
Q Consensus 233 ~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~ 308 (446)
......|+|++|++.++.....+..-.++|+.+++....-.. . ..+..+++++.|.++++.+.
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~------~-------~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR------A-------PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS------C-------CCTTSCCCCSCEECSSTTTS
T ss_pred HhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC------C-------chhhhCCCccEEECcCCCCC
Confidence 001112688888888876654433334678877776553210 0 11467899999999988654
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.44 E-value=1.3e-08 Score=91.89 Aligned_cols=164 Identities=10% Similarity=0.042 Sum_probs=105.7
Q ss_pred ccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEe-ccCcceE
Q 013263 139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKRL 217 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~-~~~L~~L 217 (446)
...+++.+++.++.+...+....+++|++|+++++.+..- . -+..+++|+.|.+.+|.+.++ .. +. .++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~-~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDL-SP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCC-GG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCC-hh--hccCCCCCEE
Confidence 3567788888888887766677899999999999988722 2 367899999999999987766 44 33 4899999
Q ss_pred EEeeccCcccccCceEEEEecccceeEEeeccCCcce-EEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCC
Q 013263 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKN 296 (446)
Q Consensus 218 ~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 296 (446)
+++.|...... ... .++|+.|++.++..... .+..+++|+.+++....- .+ . ..+..+++
T Consensus 91 ~L~~N~l~~l~----~~~--~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i----~~--~-------~~l~~l~~ 151 (263)
T 1xeu_A 91 SVNRNRLKNLN----GIP--SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKL----KS--I-------VMLGFLSK 151 (263)
T ss_dssp ECCSSCCSCCT----TCC--CSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCC----CB--C-------GGGGGCTT
T ss_pred ECCCCccCCcC----ccc--cCcccEEEccCCccCCChhhcCcccccEEECCCCcC----CC--C-------hHHccCCC
Confidence 99999765421 111 18899999988765432 244556666655544321 00 0 12445566
Q ss_pred eeEEEEeCCccccccccccccCCCCCCCCccceEEEEec
Q 013263 297 IKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV 335 (446)
Q Consensus 297 l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 335 (446)
++.|.++.+.+..+ ..+..+++|+.|+++.+
T Consensus 152 L~~L~L~~N~i~~~--------~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 152 LEVLDLHGNEITNT--------GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCEEECTTSCCCBC--------TTSTTCCCCCEEEEEEE
T ss_pred CCEEECCCCcCcch--------HHhccCCCCCEEeCCCC
Confidence 66666665544321 22334555555555543
No 103
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.43 E-value=3.5e-07 Score=93.28 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=63.5
Q ss_pred CceEEEEEecCCccccCCC-cccccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013263 117 NVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
.+++|+|+.+. ...+|. .+.++++|++|+|++|.+...+ .+.++++|++|+|+++.+..- -...+.++++|++|
T Consensus 53 ~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCC--CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEE
Confidence 67777776654 234554 4556777888888777665532 245677778888877766511 11235677777777
Q ss_pred EEEeeEeCCCCceEEEe-ccCcceEEEeeccC
Q 013263 194 SIKGYIYGTDSVTLNIP-SLTLKRLRLELEAP 224 (446)
Q Consensus 194 ~L~~~~~~~~~~~~~i~-~~~L~~L~i~~~~~ 224 (446)
.+.+|...++ ....+. .++|+.|++..|..
T Consensus 130 ~Ls~N~l~~l-~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 130 VAVETNLASL-ENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp ECTTSCCCCS-TTCCCTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCCC-ChhhhhcCcccCeeccccCcc
Confidence 7777665444 222222 36677777766654
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.41 E-value=8.6e-08 Score=95.82 Aligned_cols=177 Identities=15% Similarity=0.105 Sum_probs=125.6
Q ss_pred cCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCcceEEE
Q 013263 140 CKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRL 219 (446)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~L~i 219 (446)
+.+|++|+|.++.+...|... +++|++|+|+++.+.. +. ..+++|+.|.+.+|.+.++ .. +. .+|+.|++
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~i-p~--l~-~~L~~L~L 127 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLSTL-PE--LP-ASLKHLDV 127 (571)
T ss_dssp HTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCC-CC--CC-TTCCEEEC
T ss_pred cCCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCCc-ch--hh-cCCCEEEC
Confidence 358999999999888755433 5899999999999882 22 4589999999999987666 33 33 39999999
Q ss_pred eeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeE
Q 013263 220 ELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKS 299 (446)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 299 (446)
++|...+. .. ..++|+.|++.++....++. .+++|+.+++..+.-. . +.. +. ++|+.
T Consensus 128 s~N~l~~l----p~---~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~----~--------lp~-l~--~~L~~ 184 (571)
T 3cvr_A 128 DNNQLTML----PE---LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQLT----F--------LPE-LP--ESLEA 184 (571)
T ss_dssp CSSCCSCC----CC---CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCS----C--------CCC-CC--TTCCE
T ss_pred CCCcCCCC----CC---cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCCC----C--------cch-hh--CCCCE
Confidence 99987642 11 57999999999987765443 5788999888765310 0 001 12 79999
Q ss_pred EEEeCCccccccccccccCCCCCCCCcc-------ceEEEEecccccHHHHHHHHhhCCCCceEEEeccc
Q 013263 300 LSLSSGTMFALDRLDYANDHSFPTFPFL-------NRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 300 L~L~~~~~~~~~~~~~~~~~~~~~~~~L-------~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 362 (446)
|.|+++.+..++ . ++. +| +.|+|+.+.-. .++.-+..+|+|+.|+++.++
T Consensus 185 L~Ls~N~L~~lp--~------~~~--~L~~~~~~L~~L~Ls~N~l~---~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 185 LDVSTNLLESLP--A------VPV--RNHHSEETEIFFRCRENRIT---HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp EECCSSCCSSCC--C------CC----------CCEEEECCSSCCC---CCCGGGGGSCTTEEEECCSSS
T ss_pred EECcCCCCCchh--h------HHH--hhhcccccceEEecCCCcce---ecCHHHhcCCCCCEEEeeCCc
Confidence 999998776544 1 222 56 88888876432 233334458999999998865
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.40 E-value=2.9e-08 Score=88.92 Aligned_cols=147 Identities=15% Similarity=0.089 Sum_probs=96.6
Q ss_pred CceEEEEEecCCccccCC-CcccccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013263 117 NVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
+++.|++..+.. ..++ ..+..+++|++|+|.++.+...+. +..+++|++|+|+++.+.. .....+.++++|+.|
T Consensus 36 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 36 DTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKL 112 (251)
T ss_dssp TCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEE
T ss_pred CCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEE
Confidence 688888866542 2333 345678999999999998876533 4678999999999988872 122346788999999
Q ss_pred EEEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceE---EeCCCCceEEEEEE
Q 013263 194 SIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDY 269 (446)
Q Consensus 194 ~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~ 269 (446)
.|.+|.+.++ ..-.+ ..++|+.|++++|........ ..-..++|+.|++.++...... +..+++|+.+++..
T Consensus 113 ~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 113 YLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp ECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EcCCCcCCCc-ChhHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 9998865544 21112 247899999998876532110 1113578888888887654332 34455666655544
Q ss_pred e
Q 013263 270 G 270 (446)
Q Consensus 270 ~ 270 (446)
.
T Consensus 189 N 189 (251)
T 3m19_A 189 N 189 (251)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.37 E-value=1e-07 Score=96.29 Aligned_cols=141 Identities=19% Similarity=0.129 Sum_probs=84.0
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.+++.|+|+.+.. ..++. +..+++|++|+|.+|.+..++.+..+++|++|+|+++.+..- . -+..||+|+.|.|
T Consensus 65 ~~L~~L~Ls~N~l--~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKL--TDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCC--CCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--G-GGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCC--CCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--c-cccCCCccCEEEC
Confidence 4677777765542 22333 566788888888888777766667788888888888777621 1 2567788888888
Q ss_pred EeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce-EEeCCCCceEEEEEE
Q 013263 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDY 269 (446)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~ 269 (446)
.+|.+.++ ..+. ..++|+.|+++.|...+.. . ....++|+.|++.++..... .+..+++|+.+++..
T Consensus 139 s~N~l~~l-~~l~-~l~~L~~L~Ls~N~l~~~~----~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 139 GNNKITDI-TVLS-RLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 206 (605)
T ss_dssp CSSCCCCC-GGGG-SCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCS
T ss_pred CCCccCCc-hhhc-ccCCCCEEECcCCcCCCch----h-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccC
Confidence 77765443 1111 2367777777777654320 0 22356666666666544322 133344444444443
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.33 E-value=1.4e-07 Score=89.03 Aligned_cols=219 Identities=14% Similarity=0.055 Sum_probs=121.9
Q ss_pred CCceEEEEEecCCccccCCCc-ccccCcccEEEecceeccc-CC--CccCCCCccEE-EeeeEEeccchHHHHhccCCCc
Q 013263 116 RNVREIEISLNDDECIELPHC-IYTCKTLEVLKLDMNFFIK-TP--PTIFFPSAKIL-HVILNTIDNNFSDWLFSKCPAL 190 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~-~~--~~~~l~~L~~L-~L~~~~~~~~~l~~ll~~cp~L 190 (446)
+++++|+|+.+. ...+|.. +.++++|++|+|++|.+.. .+ .+.++++|+++ .+.++.+. .--...+.++++|
T Consensus 30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTC
T ss_pred CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhcccc
Confidence 478889988765 3567765 4568999999999887533 22 24467777654 44444444 1112346778999
Q ss_pred ceEEEEeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEe--CCCCceEEEEE
Q 013263 191 EDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVH--ELHSLTKAVVD 268 (446)
Q Consensus 191 e~L~L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~--~~~~L~~~~l~ 268 (446)
+.|.+.+|..............++..|.+.++..... .....+.-....++.|.+.++....+... ..++|+++.+.
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred ccccccccccccCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhc
Confidence 9999998875544111122345677777765421100 00000000124577788887765543221 23445555543
Q ss_pred EeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHh
Q 013263 269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS 348 (446)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~ 348 (446)
....+.... ...++.+++++.|.++.+.+..++ . ..|.+|++|.+..+.. ...++. +.
T Consensus 186 ~~n~l~~i~----------~~~f~~l~~L~~LdLs~N~l~~lp------~---~~~~~L~~L~~l~~~~--l~~lP~-l~ 243 (350)
T 4ay9_X 186 DNNNLEELP----------NDVFHGASGPVILDISRTRIHSLP------S---YGLENLKKLRARSTYN--LKKLPT-LE 243 (350)
T ss_dssp TCTTCCCCC----------TTTTTTEECCSEEECTTSCCCCCC------S---SSCTTCCEEECTTCTT--CCCCCC-TT
T ss_pred cCCcccCCC----------HHHhccCcccchhhcCCCCcCccC------h---hhhccchHhhhccCCC--cCcCCC-ch
Confidence 322211111 134678889999999988776554 1 2366777776544332 111111 45
Q ss_pred hCCCCceEEEec
Q 013263 349 RMPKLESIVFEE 360 (446)
Q Consensus 349 ~~p~L~~L~i~~ 360 (446)
.+++|+.+++..
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 677888888754
No 108
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.32 E-value=7.2e-08 Score=98.36 Aligned_cols=145 Identities=14% Similarity=0.157 Sum_probs=88.3
Q ss_pred cccceeEEeeccCCcce---EEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccc
Q 013263 238 APNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLD 314 (446)
Q Consensus 238 ~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~ 314 (446)
.++++.+++..+..... .+..++.++.+++....... ......+..+++++.|.|+.+.+..+.
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~----------~~~~~~~~~l~~L~~L~Ls~N~L~~l~--- 510 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----------NFLPDIFTELRNLTFLDLSQCQLEQLS--- 510 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----------GEECSCCTTCTTCCEEECTTSCCCEEC---
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhccccc----------ccCchhhhhccccCEEECCCCccCCcC---
Confidence 35556666555433221 23456777777775443211 001123567889999999988776544
Q ss_pred cccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccCCCCCCCccc----ccccccceeEEEEE--Ee
Q 013263 315 YANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVDFEWPEPSLA----LGCLLSHVKIIVIG--EF 388 (446)
Q Consensus 315 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~----~~~~~~~L~~v~i~--~~ 388 (446)
...+..+++|+.|+|+.+.-... ....+..+++|+.|+++.+. +... ...+.++|+.+.+. .|
T Consensus 511 ---~~~f~~l~~L~~L~Ls~N~l~~l--~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 511 ---PTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLNSLQVLDYSLNH------IMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp ---TTTTTTCTTCCEEECTTSCCCBC--CCGGGTTCTTCCEEECTTSC------CCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred ---hHHHcCCCCCCEEECCCCcCCCC--ChhHHhCCCCCCEEECCCCc------CCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 34566788899999987642111 12346788999999998743 2111 11223689999988 47
Q ss_pred eCchhHHHHHHHHHhhcc
Q 013263 389 EGEENEMKLIKYLLKNGE 406 (446)
Q Consensus 389 ~g~~~~~~~~~~ll~~a~ 406 (446)
.+.+....|..++-++..
T Consensus 580 ~C~C~~~~~~~wl~~~~~ 597 (635)
T 4g8a_A 580 ACTCEHQSFLQWIKDQRQ 597 (635)
T ss_dssp CCSGGGHHHHHHHHHTTT
T ss_pred cccCCcHHHHHHHHhCCC
Confidence 777777788888755443
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.31 E-value=4.8e-07 Score=79.18 Aligned_cols=154 Identities=17% Similarity=0.227 Sum_probs=84.7
Q ss_pred cccCCCcccccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceE
Q 013263 130 CIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL 207 (446)
Q Consensus 130 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~ 207 (446)
...+|..+. ++|++|++.++.+...+ .+..+++|++|+|+++.+.. .....+.++++|+.|.|.+|.+..+ ..-
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~ 98 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITEL-PKS 98 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-ECTTTTTTCSSCCEEECCSSCCCCC-CTT
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-cCHHHhhCCcCCCEEECCCCcCCcc-CHh
Confidence 345555443 56777777777665533 34567777777777776651 1122345667777777776643332 000
Q ss_pred EEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHH
Q 013263 208 NIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAV 287 (446)
Q Consensus 208 ~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (446)
.....++|+.|++.++......
T Consensus 99 --------------------------~f~~l~~L~~L~L~~N~l~~~~-------------------------------- 120 (220)
T 2v9t_B 99 --------------------------LFEGLFSLQLLLLNANKINCLR-------------------------------- 120 (220)
T ss_dssp --------------------------TTTTCTTCCEEECCSSCCCCCC--------------------------------
T ss_pred --------------------------HccCCCCCCEEECCCCCCCEeC--------------------------------
Confidence 0011344555555444322110
Q ss_pred HHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecc---cccHHHHHHHHhhCC
Q 013263 288 VDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG---ACGWLSLAHIFSRMP 351 (446)
Q Consensus 288 ~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~---~~~~~~l~~ll~~~p 351 (446)
...+..+++|+.|.|+++.+..+. ...+..+++|+.|++..+. .+...++...+..-+
T Consensus 121 ~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~ 181 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNKLQTIA------KGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNP 181 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred HHHcCCCCCCCEEECCCCcCCEEC------HHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCC
Confidence 012446777888888877766443 2334566778888887543 235666666666543
No 110
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.25 E-value=8e-08 Score=82.66 Aligned_cols=89 Identities=20% Similarity=0.092 Sum_probs=64.7
Q ss_pred ccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-
Q 013263 131 IELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI- 209 (446)
Q Consensus 131 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i- 209 (446)
..+|..+..+++|++|++++|.+...|....+++|++|+|+++.+. .+...+..+|+|+.|++.+|.+.++ . .+
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l-~--~~~ 112 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASL-S--GIE 112 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCH-H--HHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcC-C--ccc
Confidence 3444467778999999999998887776668899999999999887 2334556678899999999876654 2 12
Q ss_pred eccCcceEEEeeccC
Q 013263 210 PSLTLKRLRLELEAP 224 (446)
Q Consensus 210 ~~~~L~~L~i~~~~~ 224 (446)
..++|+.|++.+|..
T Consensus 113 ~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKI 127 (198)
T ss_dssp HHHHSSEEEESEEEC
T ss_pred cCCCCCEEECCCCcC
Confidence 236677777776644
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.23 E-value=2.4e-07 Score=77.32 Aligned_cols=82 Identities=17% Similarity=0.038 Sum_probs=56.2
Q ss_pred cCcccEEEecceecc--cCCCc-cCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-eccCcc
Q 013263 140 CKTLEVLKLDMNFFI--KTPPT-IFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLK 215 (446)
Q Consensus 140 ~~~L~~L~L~~~~~~--~~~~~-~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~L~ 215 (446)
.++|++|++.+|.+. ..|.. ..+++|++|+|+++.+..- ..+..+++|+.|.+.+|.+.+. -...+ ..++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCC
Confidence 477899999998876 44444 6788999999998887732 4567788899999988865542 11111 246666
Q ss_pred eEEEeeccCc
Q 013263 216 RLRLELEAPE 225 (446)
Q Consensus 216 ~L~i~~~~~~ 225 (446)
.|++.+|...
T Consensus 99 ~L~Ls~N~l~ 108 (168)
T 2ell_A 99 HLNLSGNKLK 108 (168)
T ss_dssp EEECBSSSCC
T ss_pred EEeccCCccC
Confidence 6666666543
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.19 E-value=2.1e-07 Score=81.99 Aligned_cols=124 Identities=19% Similarity=0.043 Sum_probs=56.9
Q ss_pred CcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-eccCcceE
Q 013263 141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRL 217 (446)
Q Consensus 141 ~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~L~~L 217 (446)
++|++|+|.++.+...+ .+..+++|++|+|+++.+.. .-...+.++++|+.|.|.+|.+..+ ..-.+ ..++|+.|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeE
Confidence 45555555555554431 13345555555555555441 0112234455555555555543322 11111 12455555
Q ss_pred EEeeccCcccccCceEEEEecccceeEEeeccCCcceE---EeCCCCceEEEEEEe
Q 013263 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYG 270 (446)
Q Consensus 218 ~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~ 270 (446)
.+.+|........ ....++|+.|++.++...... +..+++|+.+++...
T Consensus 118 ~Ls~N~l~~lp~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 118 FMCCNKLTELPRG----IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp ECCSSCCCSCCTT----GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eccCCcccccCcc----cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 5555544311000 123456666666665443332 445666776666543
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.18 E-value=7.8e-08 Score=81.04 Aligned_cols=102 Identities=16% Similarity=0.064 Sum_probs=50.2
Q ss_pred CceEEEEEecCCccccCCCccccc-CcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 117 NVREIEISLNDDECIELPHCIYTC-KTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~-~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
++++|+++.+.- ..+|. +..+ ++|++|++++|.+...+.+..+++|++|+|+++.+..- -..++.++|+|+.|++
T Consensus 20 ~L~~L~l~~n~l--~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCC--chhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEEC
Confidence 455555554432 22332 3333 36666666666655544455566666666666665511 0122345666666666
Q ss_pred EeeEeCCCCceE-EE-eccCcceEEEeecc
Q 013263 196 KGYIYGTDSVTL-NI-PSLTLKRLRLELEA 223 (446)
Q Consensus 196 ~~~~~~~~~~~~-~i-~~~~L~~L~i~~~~ 223 (446)
.+|.+..+ ..+ .+ ..++|+.|.+.+|.
T Consensus 96 ~~N~i~~~-~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 96 TNNSLVEL-GDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp CSCCCCCG-GGGGGGGGCTTCCEEECCSSG
T ss_pred CCCcCCcc-hhhHhhhcCCCCCEEEecCCC
Confidence 66554333 110 11 12455555555543
No 114
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.16 E-value=1.5e-06 Score=81.83 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=71.3
Q ss_pred cccCCCcccccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceE
Q 013263 130 CIELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL 207 (446)
Q Consensus 130 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~ 207 (446)
...+|..+ .+++++|+|.++.+...+. +.++++|++|+|+++.+.+.-=...+.++++|+++.+.++ ..+ ..+
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~--N~l-~~l 95 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA--NNL-LYI 95 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE--TTC-CEE
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC--Ccc-ccc
Confidence 45777765 3689999999998877543 5689999999999997641111124567888887655553 122 222
Q ss_pred E---E-eccCcceEEEeeccCcccccCceEEEEecccceeEEeecc
Q 013263 208 N---I-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH 249 (446)
Q Consensus 208 ~---i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 249 (446)
. + ..++|+.|.+.+|..... .........++..+.+.+.
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHL---PDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSC---CCCTTCCBSSCEEEEEESC
T ss_pred CchhhhhccccccccccccccccC---Cchhhcccchhhhhhhccc
Confidence 1 1 248899999999876532 1111123456666776653
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.16 E-value=9e-07 Score=77.93 Aligned_cols=129 Identities=15% Similarity=0.034 Sum_probs=69.7
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
.+++.|+++.+.. ....|..+..+++|++|+|.++.+...+. +..+++|++|+|+++.+. ......+.++++|+.|
T Consensus 40 ~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQI-TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCcc-CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE
Confidence 4667777765542 12223444556777777777776655432 346677777777777665 1112234566777777
Q ss_pred EEEeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccC
Q 013263 194 SIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG 250 (446)
Q Consensus 194 ~L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 250 (446)
.|.+|.+..+ ..---..++|+.|++.+|....... ......++|+.|.+.++.
T Consensus 118 ~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 118 FMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPH---GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECTTSC
T ss_pred eccCCccccc-CcccccCCCCCEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCC
Confidence 7776654332 1000123667777777765542110 011124667777776654
No 116
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=1.1e-06 Score=82.64 Aligned_cols=65 Identities=23% Similarity=0.226 Sum_probs=41.3
Q ss_pred chHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEE-EecccceeEEee
Q 013263 178 NFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVI-IRAPNLEQLYIR 247 (446)
Q Consensus 178 ~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~-~~~p~L~~L~l~ 247 (446)
.++..++..+|+|++|.|.+|. +. ....+..++|++|.+..|..... ....+. ...|+|++|.++
T Consensus 162 ~~L~~ll~~~P~L~~L~L~g~~--~l-~l~~~~~~~L~~L~L~~~~l~~~--~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 162 VDLSPVLDAMPLLNNLKIKGTN--NL-SIGKKPRPNLKSLEIISGGLPDS--VVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CBCHHHHHTCTTCCEEEEECCB--TC-BCCSCBCTTCSEEEEECSBCCHH--HHHHHHHSBCTTCCEEEEE
T ss_pred cCHHHHHhcCCCCcEEEEeCCC--Cc-eeccccCCCCcEEEEecCCCChH--HHHHHHHccCCCCcEEEEe
Confidence 3577888999999999999873 22 21124478999999987754321 000111 145777777764
No 117
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=1.9e-06 Score=81.12 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhcCC-CCcceEEEEecccCC--c--ccHHHHHHHH-HhCCceEEEEEecCCcc--------ccCCCccc
Q 013263 73 TRFENFVHRVLLSAS-GNINKFSLRCCGLVD--S--SRLKLWVSFA-TMRNVREIEISLNDDEC--------IELPHCIY 138 (446)
Q Consensus 73 ~~~~~~v~~~l~~~~-~~v~~l~l~~~~~~~--~--~~~~~wi~~~-~~~~l~~L~l~~~~~~~--------~~lp~~l~ 138 (446)
..+.+.+.++|.... ..|+.+.+.... .+ . ..+..+++.. ..++++.|.+....... ..+...+.
T Consensus 91 ~~~~~~~~~fl~~~~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~ 169 (362)
T 2ra8_A 91 EEGVNLMDKILKDKKLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD 169 (362)
T ss_dssp HTTCCHHHHHHHCTTGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH
T ss_pred ccHHHHHHHHhcCCCchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh
Confidence 344456667777777 558888777543 22 1 1233343311 23589999885322111 11223334
Q ss_pred ccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHh-ccCCCcceEEEEe
Q 013263 139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLF-SKCPALEDLSIKG 197 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll-~~cp~Le~L~L~~ 197 (446)
.+|+|+.|.|.++.-...+. ..+++|++|+|..+.+....+..+. ..+|+|+.|.|..
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred cCCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 57899999998773222233 3588999999998888866666654 3799999999864
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.12 E-value=7.2e-07 Score=78.04 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=57.9
Q ss_pred cccEEEecceecccCCC---ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-eccCcceE
Q 013263 142 TLEVLKLDMNFFIKTPP---TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRL 217 (446)
Q Consensus 142 ~L~~L~L~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~L~~L 217 (446)
.+++|+|.++.+...+. +..+++|++|+|+++.+..- ....+.++++|+.|.|.+|.+.++ ..-.+ ..++|++|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 110 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTL 110 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEE
Confidence 34555555555443311 33555555555555554410 011234555555555555543332 11111 12555555
Q ss_pred EEeeccCcccccCceEEEEecccceeEEeeccCCcce---EEeCCCCceEEEEEEe
Q 013263 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYG 270 (446)
Q Consensus 218 ~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~ 270 (446)
++++|...+... ......++|+.|++.++..... .+..+++|+.+++...
T Consensus 111 ~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 111 MLRSNRITCVGN---DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp ECTTSCCCCBCT---TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred ECCCCcCCeECH---hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 555554432100 0011345666666666544332 2445677777766554
No 119
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.11 E-value=1.1e-07 Score=90.12 Aligned_cols=74 Identities=20% Similarity=0.088 Sum_probs=40.1
Q ss_pred HHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccc--cHHHHHHHHhhCCCCceEEEeccc
Q 013263 287 VVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGAC--GWLSLAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 287 ~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~~l~~ll~~~p~L~~L~i~~~~ 362 (446)
+...+...+++++|.|+.+.+..... ......+...++|+.|+|+.+.-. ....+...+..+|+|+.|++..+.
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~--~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGL--ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHH--HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHH--HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 34445566666666666665432110 000111233446777777766431 223455667788889999887743
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.08 E-value=4.9e-07 Score=78.29 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=26.0
Q ss_pred ccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeE
Q 013263 139 TCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI 199 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 199 (446)
.+++|++|++.++.+...+. +..+++|++|+|+++.+.. .....+.++++|+.|.+.+|.
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCCCEEEcCCCc
Confidence 34555555555554443322 2344555555555544441 011123344555555554443
No 121
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=5.5e-07 Score=74.74 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=57.9
Q ss_pred ccCCCcccccCcccEEEecceecccC--CCccCCCCccEEEeeeEE-eccchHHHHhcc---CCCcceEEEEeeE-eC--
Q 013263 131 IELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNT-IDNNFSDWLFSK---CPALEDLSIKGYI-YG-- 201 (446)
Q Consensus 131 ~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~L~~~~-~~-- 201 (446)
..+|.......+|++|++++|.+.+. ....+|++|++|+|++|. +++.++..+-.. |++|++|+|.+|. ..
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 45565433455788888888876542 234578888888888885 567777776652 6788888888875 11
Q ss_pred CCCceEEEeccCcceEEEeecc
Q 013263 202 TDSVTLNIPSLTLKRLRLELEA 223 (446)
Q Consensus 202 ~~~~~~~i~~~~L~~L~i~~~~ 223 (446)
++ ..+. .+++|++|++.+|.
T Consensus 131 Gl-~~L~-~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GI-IALH-HFRNLKYLFLSDLP 150 (176)
T ss_dssp HH-HHGG-GCTTCCEEEEESCT
T ss_pred HH-HHHh-cCCCCCEEECCCCC
Confidence 12 2221 24666666666664
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.07 E-value=2.5e-06 Score=74.51 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=97.8
Q ss_pred cEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-eccCcceEEEeec
Q 013263 144 EVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLRLELE 222 (446)
Q Consensus 144 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~ 222 (446)
+++++.++.+...|. .-.+.+++|+|+++.+..-.-...+.++++|+.|.|.+|.+.++ ..-.+ ..++|+.|+++.|
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCC
Confidence 688999888877554 23467899999999887321223467899999999998764332 11011 1367788888777
Q ss_pred cCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEE
Q 013263 223 APEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSL 302 (446)
Q Consensus 223 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L 302 (446)
....... ......++|++|.+.++...... ...+..+++|+.|.|
T Consensus 92 ~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~--------------------------------~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 92 RLENVQH---KMFKGLESLKTLMLRSNRITCVG--------------------------------NDSFIGLSSVRLLSL 136 (220)
T ss_dssp CCCCCCG---GGGTTCSSCCEEECTTSCCCCBC--------------------------------TTSSTTCTTCSEEEC
T ss_pred ccCccCH---hHhcCCcCCCEEECCCCcCCeEC--------------------------------HhHcCCCccCCEEEC
Confidence 6542100 00112456666666555432211 012456778888888
Q ss_pred eCCccccccccccccCCCCCCCCccceEEEEecc---cccHHHHHHHHh
Q 013263 303 SSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG---ACGWLSLAHIFS 348 (446)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~---~~~~~~l~~ll~ 348 (446)
+.+.+..+. ...+..+++|+.|+++.+. .+...++...++
T Consensus 137 ~~N~l~~~~------~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 137 YDNQITTVA------PGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp TTSCCCCBC------TTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred CCCcCCEEC------HHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 887766443 2445567788888887643 234455555554
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.07 E-value=7.2e-07 Score=77.23 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=74.6
Q ss_pred cccCCCcccccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceE
Q 013263 130 CIELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL 207 (446)
Q Consensus 130 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~ 207 (446)
...+|..+ .++|++|++.++.+...+. +..+++|++|+|+++.+. ......+.++++|+.|.+.+|.+.++ ..-
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~ 94 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSL-PNG 94 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC-CTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCcc-CHh
Confidence 44566544 4689999999998876543 458999999999999887 22223467899999999998865543 111
Q ss_pred EE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCC
Q 013263 208 NI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (446)
Q Consensus 208 ~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (446)
.+ ..++|+.|++++|....... ......++|++|++.++..
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPD---GVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCC
T ss_pred HhcCccCCCEEEcCCCcCcccCH---hHhccCCcCCEEECCCCcc
Confidence 11 24778888888776542100 0011246666666665543
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.04 E-value=8.6e-07 Score=83.85 Aligned_cols=133 Identities=18% Similarity=0.112 Sum_probs=76.2
Q ss_pred CceEEEEEecCCccccCCCccc--ccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 117 NVREIEISLNDDECIELPHCIY--TCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~--~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
.++.|+|+.+. ...++...+ .+++|++|+|.++.+...+ .+..+++|++|+|+++.+.. .....+.++++|+.
T Consensus 40 ~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 40 YTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEV 116 (361)
T ss_dssp TCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCE
T ss_pred CCCEEECCCCC--CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcCCCE
Confidence 46777776554 234444433 6778888888887766543 35577888888888877661 11223567788888
Q ss_pred EEEEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcc
Q 013263 193 LSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL 253 (446)
Q Consensus 193 L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~ 253 (446)
|.|.+|.+..+ ..-.+ ..++|+.|++++|................++|+.|++.++....
T Consensus 117 L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 117 LLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp EECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred EECCCCcccEE-CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88877653322 11111 13677778877776543211111111245777777777665543
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.03 E-value=4.2e-07 Score=74.15 Aligned_cols=82 Identities=18% Similarity=0.038 Sum_probs=56.1
Q ss_pred cCcccEEEecceecc--cCCC-ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCcce
Q 013263 140 CKTLEVLKLDMNFFI--KTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (446)
Q Consensus 140 ~~~L~~L~L~~~~~~--~~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~ 216 (446)
.++|++|++.+|.+. ..|. ...+++|++|+|+++.+..- ..+..+++|+.|.+.+|...+.-....-..++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 478999999999887 4443 36789999999999988733 45678899999999887655420111112355666
Q ss_pred EEEeeccC
Q 013263 217 LRLELEAP 224 (446)
Q Consensus 217 L~i~~~~~ 224 (446)
|++++|..
T Consensus 93 L~ls~N~i 100 (149)
T 2je0_A 93 LNLSGNKI 100 (149)
T ss_dssp EECTTSCC
T ss_pred EECCCCcC
Confidence 66655543
No 126
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.03 E-value=2.5e-06 Score=76.65 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=34.4
Q ss_pred CcCCCCchHHHHHHhcCCChhhhh-hccccchhHHHHh
Q 013263 9 DRISCLPNAILCHILSFLPTKYAV-ATCVLSSTWKLVW 45 (446)
Q Consensus 9 d~is~LPdelL~~Ils~L~~~~~~-r~s~vsrrWr~lw 45 (446)
..+..||+|++.+||++||.++++ ++++|||+||.+-
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 478899999999999999999999 9999999999763
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.03 E-value=5.5e-07 Score=78.81 Aligned_cols=106 Identities=18% Similarity=0.088 Sum_probs=73.1
Q ss_pred CCceEEEEEecCCccccCCC-cccccCcccEEEecceecccC--CCccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
.++++|++..+.. ..+|. .+..+++|++|+|.++.+... ..+.++++|++|+|+++.+. ..-..++.++++|+.
T Consensus 32 ~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCE
Confidence 3688888876653 34454 455689999999999987654 34568899999999999887 111234577899999
Q ss_pred EEEEeeEeCCCCceEEE-eccCcceEEEeeccCc
Q 013263 193 LSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPE 225 (446)
Q Consensus 193 L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~ 225 (446)
|.|.+|.+.++ ..-.+ ..++|+.|++.+|...
T Consensus 109 L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 109 LLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp EECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCS
T ss_pred EECCCCCCCEe-CHHHcCCCCCCCEEECCCCcCC
Confidence 99998865544 21112 1367777777777544
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.02 E-value=3.8e-07 Score=76.74 Aligned_cols=84 Identities=12% Similarity=-0.168 Sum_probs=57.1
Q ss_pred ccccCcccEEEecceecccCCCccCCC-CccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEE-EeccCc
Q 013263 137 IYTCKTLEVLKLDMNFFIKTPPTIFFP-SAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN-IPSLTL 214 (446)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~-i~~~~L 214 (446)
...+.+|++|++.+|.+...+....+. +|++|+|+++.+..- ..+.++++|+.|.+.+|.+.++ ..-. -..++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccccc-CcchhhcCCCC
Confidence 456889999999999888766666555 999999999988732 3467788888888888754322 1000 123566
Q ss_pred ceEEEeeccC
Q 013263 215 KRLRLELEAP 224 (446)
Q Consensus 215 ~~L~i~~~~~ 224 (446)
+.|++++|..
T Consensus 91 ~~L~L~~N~i 100 (176)
T 1a9n_A 91 TELILTNNSL 100 (176)
T ss_dssp CEEECCSCCC
T ss_pred CEEECCCCcC
Confidence 6666666544
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.91 E-value=1.6e-06 Score=82.09 Aligned_cols=91 Identities=18% Similarity=0.084 Sum_probs=55.3
Q ss_pred cccCCCcccccCcccEEEecceecccCCC--cc-CCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCce
Q 013263 130 CIELPHCIYTCKTLEVLKLDMNFFIKTPP--TI-FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVT 206 (446)
Q Consensus 130 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~--~~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~ 206 (446)
...+|..+. +++++|+|+++.+...+. +. .+++|++|+|+++.+..- ....+.++++|+.|.|.+|.+..+ ..
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~-~~ 105 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHLHTL-DE 105 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEE-CT
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcCCcC-CH
Confidence 345666443 457888888887765432 33 788888888888877611 112356788888888888653322 10
Q ss_pred EEE-eccCcceEEEeeccC
Q 013263 207 LNI-PSLTLKRLRLELEAP 224 (446)
Q Consensus 207 ~~i-~~~~L~~L~i~~~~~ 224 (446)
-.+ ..++|+.|++.+|..
T Consensus 106 ~~~~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHI 124 (361)
T ss_dssp TTTTTCTTCCEEECCSSCC
T ss_pred HHhCCCcCCCEEECCCCcc
Confidence 001 125666666666644
No 130
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.91 E-value=2.1e-06 Score=76.25 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=32.2
Q ss_pred cCCCCchHHHHHHhcCCChhhhhhccccchhHHH
Q 013263 10 RISCLPNAILCHILSFLPTKYAVATCVLSSTWKL 43 (446)
Q Consensus 10 ~is~LPdelL~~Ils~L~~~~~~r~s~vsrrWr~ 43 (446)
.|+.||+||+.+||+||+.+|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999995
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.86 E-value=3e-06 Score=72.37 Aligned_cols=80 Identities=19% Similarity=0.144 Sum_probs=38.5
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEE
Q 013263 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (446)
++++|++..+.. ..+|..+..+++|++|+|+++.+...+ .+.++++|++|+|+++.+..- ....+.++++|+.|.
T Consensus 32 ~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i-~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 32 DVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI-PPRTFDGLKSLRLLS 108 (193)
T ss_dssp TCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe-CHHHhCCCCCCCEEE
Confidence 455555544432 244444445555555555555554432 134555555555555555411 011234455555555
Q ss_pred EEeeE
Q 013263 195 IKGYI 199 (446)
Q Consensus 195 L~~~~ 199 (446)
|.+|.
T Consensus 109 L~~N~ 113 (193)
T 2wfh_A 109 LHGND 113 (193)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 55543
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.84 E-value=2.4e-06 Score=72.96 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=62.3
Q ss_pred eEEEEEecCCccccCCCcccccCcccEEEecceecccCCC---ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 119 REIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP---TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 119 ~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
+.++++... ...+|..+.. +|++|++.++.+...+. +..+++|++|+|+++.+.. .....+.++++|+.|.|
T Consensus 11 ~~l~~s~~~--l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRG--LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSC--CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCC--cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC-cCHhHcCCcccCCEEEC
Confidence 344443332 3566665543 78888888887766543 5578888888888887772 11234567888888888
Q ss_pred EeeEeCCCCceEEE-eccCcceEEEeeccCc
Q 013263 196 KGYIYGTDSVTLNI-PSLTLKRLRLELEAPE 225 (446)
Q Consensus 196 ~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~ 225 (446)
.+|.+.++ ..-.+ ..++|+.|++++|...
T Consensus 86 s~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 86 GENKIKEI-SNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp CSCCCCEE-CSSSSTTCTTCCEEECCSSCCC
T ss_pred CCCcCCcc-CHHHhcCCCCCCEEECCCCcCC
Confidence 88754432 11111 1366777777666543
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.83 E-value=2.6e-06 Score=85.37 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=60.6
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCC-CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013263 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++.|+++.+. ...+|. +..+++|++|+|++|.+...| .+..+++|++|+|+++.+.. +. -+.++++|+.|.|
T Consensus 442 ~L~~L~Ls~n~--l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKD--LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSC--CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCC--CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence 46666665554 234555 666777777777777666544 34467777777777777662 22 3566777777777
Q ss_pred EeeEeCCCCc-eEEEe-ccCcceEEEeeccCc
Q 013263 196 KGYIYGTDSV-TLNIP-SLTLKRLRLELEAPE 225 (446)
Q Consensus 196 ~~~~~~~~~~-~~~i~-~~~L~~L~i~~~~~~ 225 (446)
.+|.+.++ . .-.+. .++|+.|++++|...
T Consensus 516 s~N~l~~~-~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 516 CNNRLQQS-AAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CSSCCCSS-STTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCC-CCcHHHhcCCCCCEEEecCCcCC
Confidence 77654443 1 11222 356666666665443
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.76 E-value=7.3e-06 Score=68.82 Aligned_cols=105 Identities=17% Similarity=0.142 Sum_probs=44.6
Q ss_pred CcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-eccCcceE
Q 013263 141 KTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRL 217 (446)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~L~~L 217 (446)
++|++|++.++.+...+. +..+++|++|+|+++.+. ......+.++++|+.|.+.+|.+.++ ..-.+ ..++|+.|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCEE
Confidence 355555555554443321 234555555555555444 11112234455555555555443322 11001 12455555
Q ss_pred EEeeccCcccccCceEEEEecccceeEEeeccC
Q 013263 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG 250 (446)
Q Consensus 218 ~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 250 (446)
++.+|....... ......++|++|++.++.
T Consensus 106 ~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 106 ALDTNQLKSVPD---GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ECCSSCCSCCCT---TTTTTCTTCCEEECCSSC
T ss_pred ECcCCcceEeCH---HHhcCCcccCEEEecCCC
Confidence 555554332100 001124566666666554
No 135
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=3.6e-05 Score=63.79 Aligned_cols=40 Identities=3% Similarity=-0.039 Sum_probs=21.9
Q ss_pred CCCCccceEEEEecccccHHHHHHHHhh---CCCCceEEEecc
Q 013263 322 PTFPFLNRLEVEGVGACGWLSLAHIFSR---MPKLESIVFEEG 361 (446)
Q Consensus 322 ~~~~~L~~L~L~~~~~~~~~~l~~ll~~---~p~L~~L~i~~~ 361 (446)
..+++|++|+|+.|...++.++..+-.. ||+|+.|+|+.|
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 3455566666666555555555555442 455555555553
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.70 E-value=7.1e-06 Score=68.90 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=49.7
Q ss_pred CceEEEEEecCCccccCCCcc-cccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013263 117 NVREIEISLNDDECIELPHCI-YTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
++++|+++.+.. ..+|... ..+++|++|++.++.+...+. +..+++|++|+|+++.+. ......+.++++|+.|
T Consensus 29 ~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 29 SATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEE
Confidence 555565554432 2333332 345666666666665554332 235566666666665554 1111223455666666
Q ss_pred EEEeeEeCCCCceEEE-eccCcceEEEeeccC
Q 013263 194 SIKGYIYGTDSVTLNI-PSLTLKRLRLELEAP 224 (446)
Q Consensus 194 ~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~ 224 (446)
.+.+|.+.++ ..-.+ ..++|+.|++.+|.+
T Consensus 106 ~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 106 ALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECCSSCCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcceEe-CHHHhcCCcccCEEEecCCCe
Confidence 6665543332 11011 125566666665543
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.65 E-value=7e-06 Score=70.06 Aligned_cols=91 Identities=21% Similarity=0.151 Sum_probs=53.5
Q ss_pred cccCCCcccccCcccEEEecceecccCC-CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEE
Q 013263 130 CIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN 208 (446)
Q Consensus 130 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~ 208 (446)
...+|..+. ++|++|+|.++.+...| .+..+++|++|+|+++.+.. .....+.++++|+.|.|.+|.+.++ ..-.
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~i-~~~~ 97 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRLRCI-PPRT 97 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBC-CTTT
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEECCCCccCEe-CHHH
Confidence 345565443 57888888887776554 34467788888888777761 1122356677788888877654433 1111
Q ss_pred Ee-ccCcceEEEeeccC
Q 013263 209 IP-SLTLKRLRLELEAP 224 (446)
Q Consensus 209 i~-~~~L~~L~i~~~~~ 224 (446)
+. .++|+.|++.+|..
T Consensus 98 f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp TTTCTTCCEEECCSSCC
T ss_pred hCCCCCCCEEECCCCCC
Confidence 11 25566666665543
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.59 E-value=1e-05 Score=69.00 Aligned_cols=104 Identities=16% Similarity=0.058 Sum_probs=71.4
Q ss_pred CceEEEEEecCCccccCCCc--ccccCcccEEEecceecccC-C-CccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 117 NVREIEISLNDDECIELPHC--IYTCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~--l~~~~~L~~L~L~~~~~~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
++++|+++.+.. ..++.. +..+++|++|+|+++.+... + .+.++++|++|+|+++.+..- ....+.+.++|+.
T Consensus 30 ~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCE
T ss_pred CCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc-CHHHhcCCCCCCE
Confidence 788888876653 445542 56799999999999988764 2 456899999999999988721 1233567899999
Q ss_pred EEEEeeEeCCCCceEEEe-ccCcceEEEeeccC
Q 013263 193 LSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAP 224 (446)
Q Consensus 193 L~L~~~~~~~~~~~~~i~-~~~L~~L~i~~~~~ 224 (446)
|.|.+|.+.+. ..-.+. .++|+.|++.+|.+
T Consensus 107 L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 107 LNLYDNQISCV-MPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EECCSSCCCEE-CTTSSTTCTTCCEEECTTCCB
T ss_pred EECCCCcCCee-CHHHhhcCCCCCEEEeCCCCc
Confidence 99999764432 111111 25666666666643
No 139
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.59 E-value=1.6e-05 Score=77.57 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=37.7
Q ss_pred CCCCcCCCCchHHHHHHhcCCChhhhhhccccchhHHHHhcc
Q 013263 6 STEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTS 47 (446)
Q Consensus 6 ~~~d~is~LPdelL~~Ils~L~~~~~~r~s~vsrrWr~lw~~ 47 (446)
-..|.|+.||+|++.+||+||+.+++++++.|||+|+++...
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 357899999999999999999999999999999999975443
No 140
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.48 E-value=4.6e-05 Score=73.84 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=37.4
Q ss_pred CCCCCCcCCCCchHHHHHHhcCCChhhhhhccccchhHHHH
Q 013263 4 GPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLV 44 (446)
Q Consensus 4 ~~~~~d~is~LPdelL~~Ils~L~~~~~~r~s~vsrrWr~l 44 (446)
.....|.++.||+|++.+||+||+.+++++++.|||+|+.+
T Consensus 12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 34567999999999999999999999999999999999963
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.48 E-value=2e-05 Score=78.99 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=72.3
Q ss_pred hCCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEE
Q 013263 115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (446)
Q Consensus 115 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (446)
..+++.|+++.+.- ..+|..+..+++|++|+|++|.+...|.+..+++|++|+|+++.+..-.....+.++++|+.|.
T Consensus 462 l~~L~~L~Ls~N~l--~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 462 LLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp GTTCCEEECCSSCC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred cccCcEeecCcccc--cccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 35899999988764 4889999999999999999999988787778999999999999987322134578899999999
Q ss_pred EEeeEeCCC
Q 013263 195 IKGYIYGTD 203 (446)
Q Consensus 195 L~~~~~~~~ 203 (446)
|.+|.+.+.
T Consensus 540 L~~N~l~~~ 548 (567)
T 1dce_A 540 LQGNSLCQE 548 (567)
T ss_dssp CTTSGGGGS
T ss_pred ecCCcCCCC
Confidence 999875443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.47 E-value=4e-05 Score=63.80 Aligned_cols=100 Identities=18% Similarity=0.064 Sum_probs=60.0
Q ss_pred eEEEEEecCCccccCCCcccccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEE
Q 013263 119 REIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (446)
Q Consensus 119 ~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (446)
+.++++... ...+|..+. ++|++|+|.++.+...+ .+..+++|++|+|+++.+. ..-...+.++++|+.|.|.
T Consensus 12 ~~l~~s~n~--l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKS--LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSC--CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCC--cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence 445544333 345666553 67888888888776652 2457788888888888776 1112335677888888888
Q ss_pred eeEeCCCCceEEE-eccCcceEEEeeccC
Q 013263 197 GYIYGTDSVTLNI-PSLTLKRLRLELEAP 224 (446)
Q Consensus 197 ~~~~~~~~~~~~i-~~~~L~~L~i~~~~~ 224 (446)
+|.+.++ ..-.+ ..++|+.|++.+|.+
T Consensus 87 ~N~l~~~-~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSI-PRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEe-CHHHhcCCCCCCEEEeCCCCC
Confidence 7765443 11111 125666666666543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.46 E-value=4.3e-05 Score=63.87 Aligned_cols=100 Identities=14% Similarity=0.019 Sum_probs=59.7
Q ss_pred eEEEEEecCCccccCCCcccccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEE
Q 013263 119 REIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (446)
Q Consensus 119 ~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (446)
+.++++... ...+|..+. ++|++|+|+++.+...+ .+..+++|++|+|+++.+.. .-..++.++++|+.|.|.
T Consensus 15 ~~l~~~~n~--l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIR--LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSC--CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCC--CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECC
Confidence 445544333 356666553 77888888888776653 24578888888888887761 111234667888888888
Q ss_pred eeEeCCCCceEEEe-ccCcceEEEeeccC
Q 013263 197 GYIYGTDSVTLNIP-SLTLKRLRLELEAP 224 (446)
Q Consensus 197 ~~~~~~~~~~~~i~-~~~L~~L~i~~~~~ 224 (446)
+|.+.++ ..-.+. .++|+.|.+.+|.+
T Consensus 90 ~N~l~~l-~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 90 DNHLKSI-PRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SSCCCCC-CTTTTTTCTTCSEEECCSSCB
T ss_pred CCcccee-CHHHhccccCCCEEEeCCCCc
Confidence 7764443 111111 25566666665543
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.44 E-value=2.7e-06 Score=80.63 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=33.0
Q ss_pred CcccEEEecceecccC---CCccCCCCccEEEeeeEEeccchHHHH---h-ccCCCcceEEEEeeE
Q 013263 141 KTLEVLKLDMNFFIKT---PPTIFFPSAKILHVILNTIDNNFSDWL---F-SKCPALEDLSIKGYI 199 (446)
Q Consensus 141 ~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~l---l-~~cp~Le~L~L~~~~ 199 (446)
++|++|+|++|.+.+. .-...+++|++|+|++|.+.+.+...+ + ..++.|++|+|.+|.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC
Confidence 5677777777665431 011235567777777776664333322 2 245667777776664
No 145
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.36 E-value=4.1e-05 Score=74.03 Aligned_cols=40 Identities=30% Similarity=0.364 Sum_probs=36.7
Q ss_pred CCCCCCcCCCCchH----HHHHHhcCCChhhhhhccccchhHHH
Q 013263 4 GPSTEDRISCLPNA----ILCHILSFLPTKYAVATCVLSSTWKL 43 (446)
Q Consensus 4 ~~~~~d~is~LPde----lL~~Ils~L~~~~~~r~s~vsrrWr~ 43 (446)
..-..|.|+.||+| ++.+||+||+.+++++++.|||+|+.
T Consensus 4 ~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 4 IMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 33467999999999 99999999999999999999999994
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.34 E-value=1.5e-05 Score=82.45 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=67.0
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCC-ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEE
Q 013263 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (446)
..++.|+|+.+. ...+|..++.+++|++|+|++|.+...|. +..+++|++|+|+++.+. .+..-+.++++|+.|.
T Consensus 224 ~~L~~L~Ls~n~--l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQ--IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSC--CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCC--CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEE
Confidence 356777776554 24677777777888888888777765443 456778888888877776 2222356677788888
Q ss_pred EEeeEeCCCCceEEEe-ccCcceEEEeeccCc
Q 013263 195 IKGYIYGTDSVTLNIP-SLTLKRLRLELEAPE 225 (446)
Q Consensus 195 L~~~~~~~~~~~~~i~-~~~L~~L~i~~~~~~ 225 (446)
|.+|.+..+ -. .+. .++|+.|++++|.+.
T Consensus 300 L~~N~l~~l-p~-~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 300 FFDNMVTTL-PW-EFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCSSCCCCC-CS-STTSCTTCCCEECTTSCCC
T ss_pred CCCCCCCcc-Ch-hhhcCCCccEEeCCCCccC
Confidence 877754433 11 122 367777777777654
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.33 E-value=9.6e-05 Score=61.73 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=64.7
Q ss_pred CCceEEEEEecCCccccC-CCcccccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 116 RNVREIEISLNDDECIEL-PHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
.++++|+++.+.. ..+ |..+..+++|++|+|+++.+...+. +..+++|++|+|+++.+.. .-...+.++++|+.
T Consensus 33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCCCE
Confidence 4789999987653 344 4456679999999999999887654 3589999999999998871 11234678999999
Q ss_pred EEEEeeEeCC
Q 013263 193 LSIKGYIYGT 202 (446)
Q Consensus 193 L~L~~~~~~~ 202 (446)
|.|.+|.+..
T Consensus 110 L~L~~N~~~c 119 (174)
T 2r9u_A 110 IYLYNNPWDC 119 (174)
T ss_dssp EECCSSCBCT
T ss_pred EEeCCCCccc
Confidence 9999986543
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.30 E-value=4.5e-05 Score=65.20 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=79.6
Q ss_pred hCCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCcc-CCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013263 115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTI-FFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 115 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
..++++|+++.+. ...+| .+..+++|++|++.+|.+...|... .+++|++|+|+++.+.. +. -+..+++|+.|
T Consensus 47 l~~L~~L~ls~n~--l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 47 LKACKHLALSTNN--IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVL 120 (198)
T ss_dssp TTTCSEEECSEEE--ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEE
T ss_pred CCCCCEEECCCCC--Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEE
Confidence 4589999997664 23466 7778999999999999988766544 46899999999999883 33 36678999999
Q ss_pred EEEeeEeCCCCceE-EE-eccCcceEEEeeccCc
Q 013263 194 SIKGYIYGTDSVTL-NI-PSLTLKRLRLELEAPE 225 (446)
Q Consensus 194 ~L~~~~~~~~~~~~-~i-~~~~L~~L~i~~~~~~ 225 (446)
.+.+|.+.++ ..+ .+ ..++|+.|.+.+|...
T Consensus 121 ~l~~N~i~~~-~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 121 YMSNNKITNW-GEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EESEEECCCH-HHHHHHTTTTTCSEEEECSCHHH
T ss_pred ECCCCcCCch-hHHHHHhcCCCCCEEEecCCccc
Confidence 9999986654 221 12 3589999999998653
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.28 E-value=0.00012 Score=60.96 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=64.3
Q ss_pred CCceEEEEEecCCccccC-CCcccccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 116 RNVREIEISLNDDECIEL-PHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
..+++|+|+.+.. ..+ |..+..+++|++|+|+++.+...+. +..+++|++|+|+++.+.. .-...+.++++|+.
T Consensus 30 ~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCCCE
Confidence 4789999977653 344 4456679999999999999887653 4589999999999998871 11234678999999
Q ss_pred EEEEeeEeCC
Q 013263 193 LSIKGYIYGT 202 (446)
Q Consensus 193 L~L~~~~~~~ 202 (446)
|.|.+|.+..
T Consensus 107 L~L~~N~~~c 116 (170)
T 3g39_A 107 IWLLNNPWDC 116 (170)
T ss_dssp EECCSSCBCT
T ss_pred EEeCCCCCCC
Confidence 9999986543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.23 E-value=8.4e-05 Score=69.58 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=66.1
Q ss_pred cccCCCcccccCcccEEEecc-eecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCce
Q 013263 130 CIELPHCIYTCKTLEVLKLDM-NFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVT 206 (446)
Q Consensus 130 ~~~lp~~l~~~~~L~~L~L~~-~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~ 206 (446)
...+|. +..+.+|++|+|++ +.+...+ .+.++++|++|+|+++.+.. .....+.++++|+.|+|.+|.+.++ ..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~-~~ 97 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNALESL-SW 97 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCCSCC-CS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCcccee-CH
Confidence 456888 77788999999986 8776654 25688999999999998771 2223467889999999999875544 21
Q ss_pred EEEeccCcceEEEeeccCc
Q 013263 207 LNIPSLTLKRLRLELEAPE 225 (446)
Q Consensus 207 ~~i~~~~L~~L~i~~~~~~ 225 (446)
-.+...+|+.|.+.+|.+.
T Consensus 98 ~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTTCSCCCCEEECCSSCCC
T ss_pred HHcccCCceEEEeeCCCcc
Confidence 1122234888988887653
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.21 E-value=0.00025 Score=65.87 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=63.0
Q ss_pred cccceeEEeeccCCcce---EEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCee-EEEEeCCcccccccc
Q 013263 238 APNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIK-SLSLSSGTMFALDRL 313 (446)
Q Consensus 238 ~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~L~~~~~~~~~~~ 313 (446)
+++|+++++.++....+ .+.++++|+++.+...- ...+. ..+.+|.+|+ .+.+.. .+..+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni--~~I~~----------~aF~~~~~L~~~l~l~~-~l~~I~-- 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL--KTIGQ----------RVFSNCGRLAGTLELPA-SVTAIE-- 289 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTC--CEECT----------TTTTTCTTCCEEEEECT-TCCEEC--
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCccc--ceehH----------HHhhCChhccEEEEEcc-cceEEc--
Confidence 68899999887544332 36678889888775431 11111 3467889999 999977 444333
Q ss_pred ccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEE
Q 013263 314 DYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVF 358 (446)
Q Consensus 314 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i 358 (446)
...+..+.+|+.+++..+.-... -...+.+|++|+.++.
T Consensus 290 ----~~aF~~c~~L~~l~l~~n~i~~I--~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 290 ----FGAFMGCDNLRYVLATGDKITTL--GDELFGNGVPSKLIYK 328 (329)
T ss_dssp ----TTTTTTCTTEEEEEECSSCCCEE--CTTTTCTTCCCCEEEC
T ss_pred ----hhhhhCCccCCEEEeCCCccCcc--chhhhcCCcchhhhcc
Confidence 34566788899998854321000 0124678999998864
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.20 E-value=9.5e-05 Score=68.71 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=52.2
Q ss_pred CCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccc-eEEEEeccc
Q 013263 259 LHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLN-RLEVEGVGA 337 (446)
Q Consensus 259 ~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~ 337 (446)
+++|+.+++.... +...+. ..+..|.+|+.+.+..+ +..+. ...+..+.+|+ .+.+...-.
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~----------~aF~~~~~L~~l~l~~n-i~~I~------~~aF~~~~~L~~~l~l~~~l~ 286 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPD----------FTFAQKKYLLKIKLPHN-LKTIG------QRVFSNCGRLAGTLELPASVT 286 (329)
T ss_dssp CTTCCEEECTTBC-CCEECT----------TTTTTCTTCCEEECCTT-CCEEC------TTTTTTCTTCCEEEEECTTCC
T ss_pred cCCCeEEECCCCC-cceecH----------hhhhCCCCCCEEECCcc-cceeh------HHHhhCChhccEEEEEcccce
Confidence 7888888876421 100111 34678999999999876 44433 34566778888 888864211
Q ss_pred ccHHHHHHHHhhCCCCceEEEec
Q 013263 338 CGWLSLAHIFSRMPKLESIVFEE 360 (446)
Q Consensus 338 ~~~~~l~~ll~~~p~L~~L~i~~ 360 (446)
.. -...+.+|++|+.+.+..
T Consensus 287 -~I--~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 287 -AI--EFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp -EE--CTTTTTTCTTEEEEEECS
T ss_pred -EE--chhhhhCCccCCEEEeCC
Confidence 00 013467899999999965
No 153
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.06 E-value=3.1e-05 Score=80.01 Aligned_cols=112 Identities=11% Similarity=-0.017 Sum_probs=78.1
Q ss_pred CCCcccccCcccEEEecceecccCC-CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-e
Q 013263 133 LPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-P 210 (446)
Q Consensus 133 lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~ 210 (446)
.|..+..+++|++|+|++|.+...+ ....+++|++|+|+++.+. .+..-+.++++|+.|+|.+|.+..+ .-.+ .
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSL--PAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSC--CSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCcc--ChhhcC
Confidence 3455667899999999999887654 4558999999999999887 2333467899999999999875533 1112 2
Q ss_pred ccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCc
Q 013263 211 SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG 252 (446)
Q Consensus 211 ~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~ 252 (446)
.++|+.|.+.+|.+... +.. .-..++|+.|++.++...
T Consensus 292 l~~L~~L~L~~N~l~~l---p~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTL---PWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GTTCSEEECCSSCCCCC---CSS-TTSCTTCCCEECTTSCCC
T ss_pred CCCCCEEECCCCCCCcc---Chh-hhcCCCccEEeCCCCccC
Confidence 48899999999876422 111 234688999999887653
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.68 E-value=7.5e-05 Score=63.08 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=53.2
Q ss_pred CcccHHHHHHHHHh--CCceEEEEEec-CCc---cccCCCcccccCcccEEEecceecccC------CCccCCCCccEEE
Q 013263 102 DSSRLKLWVSFATM--RNVREIEISLN-DDE---CIELPHCIYTCKTLEVLKLDMNFFIKT------PPTIFFPSAKILH 169 (446)
Q Consensus 102 ~~~~~~~wi~~~~~--~~l~~L~l~~~-~~~---~~~lp~~l~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~ 169 (446)
....+..++..+.. +.+++|+|+.+ ..+ ...+...+..+++|++|+|++|.+.+. ......++|++|+
T Consensus 20 ~~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN 99 (185)
T ss_dssp CCCCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred CccHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEE
Confidence 34456666655544 24667766544 211 112223333456777777777766441 0112446677777
Q ss_pred eeeEEeccch---HHHHhccCCCcceEEE--EeeE
Q 013263 170 VILNTIDNNF---SDWLFSKCPALEDLSI--KGYI 199 (446)
Q Consensus 170 L~~~~~~~~~---l~~ll~~cp~Le~L~L--~~~~ 199 (446)
|+++.+.+.+ +...+..++.|++|+| .+|.
T Consensus 100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 7777776443 3333556667777777 5554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.64 E-value=0.00023 Score=60.02 Aligned_cols=62 Identities=10% Similarity=0.028 Sum_probs=39.6
Q ss_pred ccCcccEEEecce-ecccC------CCccCCCCccEEEeeeEEeccch---HHHHhccCCCcceEEEEeeEe
Q 013263 139 TCKTLEVLKLDMN-FFIKT------PPTIFFPSAKILHVILNTIDNNF---SDWLFSKCPALEDLSIKGYIY 200 (446)
Q Consensus 139 ~~~~L~~L~L~~~-~~~~~------~~~~~l~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~~~~ 200 (446)
.+++|++|+|.+| .+.+. ......++|++|+|+++.+.+.+ +...+..++.|++|+|.+|.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 4678888888877 65431 11224577778888877777443 344455667777777777653
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.06 E-value=0.00089 Score=63.87 Aligned_cols=61 Identities=8% Similarity=0.077 Sum_probs=34.1
Q ss_pred HHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecc
Q 013263 290 MLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEG 361 (446)
Q Consensus 290 ~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 361 (446)
.+.+|++|+.+.|... +..+. ...+..+.+|+.+.|...-. .. -...+..| +|+.+.+...
T Consensus 295 aF~~c~~L~~l~l~~~-i~~I~------~~aF~~c~~L~~l~lp~~l~-~I--~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 295 CLEGCPKLARFEIPES-IRILG------QGLLGGNRKVTQLTIPANVT-QI--NFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTTCTTCCEECCCTT-CCEEC------TTTTTTCCSCCEEEECTTCC-EE--CTTSSSSS-CCCEEEECCS
T ss_pred HhhCCccCCeEEeCCc-eEEEh------hhhhcCCCCccEEEECcccc-EE--cHHhCCCC-CCCEEEEcCC
Confidence 3567778888877632 33332 23455667777777743210 00 01234567 8888888764
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.80 E-value=0.0021 Score=57.22 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=51.1
Q ss_pred CCceEEEEEecCCc-cccCCCcccccCcccEEEecceecccCCCccCCC--CccEEEeeeEEecc------chHHHHhcc
Q 013263 116 RNVREIEISLNDDE-CIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFP--SAKILHVILNTIDN------NFSDWLFSK 186 (446)
Q Consensus 116 ~~l~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~--~L~~L~L~~~~~~~------~~l~~ll~~ 186 (446)
..++.|+|+.+... ...+|..+..+++|++|+|++|.+........++ +|++|+|.++.+.. .....++..
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence 47888888655421 2244555556888888888888776643333444 78888888887652 223456777
Q ss_pred CCCcceEE
Q 013263 187 CPALEDLS 194 (446)
Q Consensus 187 cp~Le~L~ 194 (446)
+|+|+.|+
T Consensus 250 ~P~L~~LD 257 (267)
T 3rw6_A 250 FPKLLRLD 257 (267)
T ss_dssp CTTCCEES
T ss_pred CcccCeEC
Confidence 88888774
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.22 E-value=0.0052 Score=57.21 Aligned_cols=81 Identities=17% Similarity=0.111 Sum_probs=55.4
Q ss_pred CceEEEEEe-cCCccccCCC-cccccCcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 117 NVREIEISL-NDDECIELPH-CIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 117 ~l~~L~l~~-~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
++++|+|+. +. ...+|. .+.++++|++|+|++|.+...+ .+..+++|++|+|+++.+..- -..++...+ |+.
T Consensus 32 ~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 32 NLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQE 107 (347)
T ss_dssp CCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CCE
T ss_pred CeeEEEccCCCC--CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ceE
Confidence 688888874 44 344553 4567899999999998877643 246789999999999888711 112233344 899
Q ss_pred EEEEeeEeC
Q 013263 193 LSIKGYIYG 201 (446)
Q Consensus 193 L~L~~~~~~ 201 (446)
|.|.+|.+.
T Consensus 108 l~l~~N~~~ 116 (347)
T 2ifg_A 108 LVLSGNPLH 116 (347)
T ss_dssp EECCSSCCC
T ss_pred EEeeCCCcc
Confidence 998887543
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.77 E-value=0.065 Score=50.90 Aligned_cols=210 Identities=13% Similarity=0.190 Sum_probs=124.1
Q ss_pred CCceEEEEEecCCccccCCCc-ccccCcccEEEecceecccC-CCccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013263 116 RNVREIEISLNDDECIELPHC-IYTCKTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
++++++.+... ...++.. +.+|++|+.+++..+.+... ..+..+.+|+++.|... +. .--...+.+|++|+.+
T Consensus 157 ~~L~~i~lp~~---l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 157 STVQEIVFPST---LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCCEEECCTT---CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCE
T ss_pred CCceEEEeCCC---ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEE
Confidence 36888777421 3345544 44599999999998766543 23335789999998643 22 0002346789999999
Q ss_pred EEEeeEeCCCCceEE---EeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCc--------ceEEeCCCCc
Q 013263 194 SIKGYIYGTDSVTLN---IPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG--------LYVVHELHSL 262 (446)
Q Consensus 194 ~L~~~~~~~~~~~~~---i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~--------~~~~~~~~~L 262 (446)
.+.++ + ..+. ....+|+.+.+..+ .... .......+++|+++.+.+.... ...+.++++|
T Consensus 232 ~l~~~----l-~~I~~~aF~~~~L~~i~lp~~-i~~I---~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L 302 (401)
T 4fdw_A 232 EIPEN----V-STIGQEAFRESGITTVKLPNG-VTNI---ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL 302 (401)
T ss_dssp ECCTT----C-CEECTTTTTTCCCSEEEEETT-CCEE---CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred ecCCC----c-cCccccccccCCccEEEeCCC-ccEE---ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence 98653 2 2221 12367888888543 1100 0011225788999998765432 2346678888
Q ss_pred eEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHH
Q 013263 263 TKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLS 342 (446)
Q Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 342 (446)
+.+.+... +...+. ..+.+|.+|+.+.|..+ +..+. ...+..+ +|+.+.+..+.....
T Consensus 303 ~~l~l~~~--i~~I~~----------~aF~~c~~L~~l~lp~~-l~~I~------~~aF~~~-~L~~l~l~~n~~~~l-- 360 (401)
T 4fdw_A 303 ARFEIPES--IRILGQ----------GLLGGNRKVTQLTIPAN-VTQIN------FSAFNNT-GIKEVKVEGTTPPQV-- 360 (401)
T ss_dssp CEECCCTT--CCEECT----------TTTTTCCSCCEEEECTT-CCEEC------TTSSSSS-CCCEEEECCSSCCBC--
T ss_pred CeEEeCCc--eEEEhh----------hhhcCCCCccEEEECcc-ccEEc------HHhCCCC-CCCEEEEcCCCCccc--
Confidence 88776521 111111 34678999999999544 33322 3445667 899999876532110
Q ss_pred HHHHHhhCC-CCceEEEecc
Q 013263 343 LAHIFSRMP-KLESIVFEEG 361 (446)
Q Consensus 343 l~~ll~~~p-~L~~L~i~~~ 361 (446)
....+.++| +++.|++-..
T Consensus 361 ~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 361 FEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCSSCCCSCTTCCEEEECGG
T ss_pred ccccccCCCCCccEEEeCHH
Confidence 012344565 6888888654
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.41 E-value=0.017 Score=51.40 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=30.3
Q ss_pred CCCCccEEEeeeEEec-cchHHHHhccCCCcceEEEEeeEeCCCCceEE-EeccCcceEEEeeccC
Q 013263 161 FFPSAKILHVILNTID-NNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN-IPSLTLKRLRLELEAP 224 (446)
Q Consensus 161 ~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~-i~~~~L~~L~i~~~~~ 224 (446)
.+++|++|+|+++.+. -..+..++..+|+|+.|+|.+|.+.++ ..+. +...+|+.|.+.+|..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcC
Confidence 3555555555555555 223334445566666666655544333 1111 1111566666665543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=83.12 E-value=0.14 Score=43.08 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=52.0
Q ss_pred CCcccHHHHHHHHHhC--CceEEEEEec-CCc---cccCCCcccccCcccEEEecceecccC--CC----ccCCCCccEE
Q 013263 101 VDSSRLKLWVSFATMR--NVREIEISLN-DDE---CIELPHCIYTCKTLEVLKLDMNFFIKT--PP----TIFFPSAKIL 168 (446)
Q Consensus 101 ~~~~~~~~wi~~~~~~--~l~~L~l~~~-~~~---~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~----~~~l~~L~~L 168 (446)
.+..+++..+..+... .+++|+|+.. ..+ ...+-..+..-.+|++|+|.+|.+.+. .. +..-+.|++|
T Consensus 24 ~N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L 103 (197)
T 1pgv_A 24 DNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVL 103 (197)
T ss_dssp ---CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEE
T ss_pred CCCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeE
Confidence 3455677777665543 4677766532 110 111222223346778888887777652 11 1134567777
Q ss_pred EeeeEEeccchHHHH---hccCCCcceEEEEee
Q 013263 169 HVILNTIDNNFSDWL---FSKCPALEDLSIKGY 198 (446)
Q Consensus 169 ~L~~~~~~~~~l~~l---l~~cp~Le~L~L~~~ 198 (446)
+|+++.+.+.+...+ +..-..|++|.|.++
T Consensus 104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 777777775544443 334455777777643
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.01 E-value=0.092 Score=44.12 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=40.2
Q ss_pred cCcccEEEecce-ecccC------CCccCCCCccEEEeeeEEecc---chHHHHhccCCCcceEEEEeeEeC
Q 013263 140 CKTLEVLKLDMN-FFIKT------PPTIFFPSAKILHVILNTIDN---NFSDWLFSKCPALEDLSIKGYIYG 201 (446)
Q Consensus 140 ~~~L~~L~L~~~-~~~~~------~~~~~l~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~~~~~ 201 (446)
-++|++|+|.++ .+.+. ..+..-..|++|+|+++.+.+ ..+..++..-..|++|+|.+|.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 467888888874 55431 011234678888888888773 345555666777888888777643
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=80.06 E-value=0.24 Score=46.67 Aligned_cols=206 Identities=11% Similarity=0.042 Sum_probs=96.3
Q ss_pred CCceEEEEEecCCccccCCCcc-cccCcccEEEeccee--cccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcce
Q 013263 116 RNVREIEISLNDDECIELPHCI-YTCKTLEVLKLDMNF--FIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED 192 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 192 (446)
.+++.+.+... ...++... .+|.+|+.+.+.... +.. ..+..+..|+.+.+....... ......|..|+.
T Consensus 162 ~~L~~i~l~~~---~~~I~~~~F~~c~~L~~i~l~~~~~~I~~-~~F~~~~~L~~i~~~~~~~~i---~~~~~~~~~l~~ 234 (394)
T 4fs7_A 162 ESLEYVSLPDS---METLHNGLFSGCGKLKSIKLPRNLKIIRD-YCFAECILLENMEFPNSLYYL---GDFALSKTGVKN 234 (394)
T ss_dssp TTCCEEECCTT---CCEECTTTTTTCTTCCBCCCCTTCCEECT-TTTTTCTTCCBCCCCTTCCEE---CTTTTTTCCCCE
T ss_pred CCCcEEecCCc---cceeccccccCCCCceEEEcCCCceEeCc-hhhccccccceeecCCCceEe---ehhhcccCCCce
Confidence 35666666321 23344433 358889888886541 111 344566777766654332221 111234566777
Q ss_pred EEEEeeEeCCCCceEE----EeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEE
Q 013263 193 LSIKGYIYGTDSVTLN----IPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVD 268 (446)
Q Consensus 193 L~L~~~~~~~~~~~~~----i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~ 268 (446)
+.+-.. . ..+. ..+..|+.+.+..+...-. ......++.++.+.+.........+..+.+|+.+.+.
T Consensus 235 i~ip~~----~-~~i~~~~f~~~~~l~~~~~~~~~~~i~----~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 235 IIIPDS----F-TELGKSVFYGCTDLESISIQNNKLRIG----GSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp EEECTT----C-CEECSSTTTTCSSCCEEEECCTTCEEC----SCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEEC
T ss_pred EEECCC----c-eecccccccccccceeEEcCCCcceee----ccccccccccceeccCceeeccccccccccccccccc
Confidence 766432 1 1111 1235566655544321100 0000123344444433222122223445666666553
Q ss_pred EeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEeccc-ccHHHHHHHH
Q 013263 269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA-CGWLSLAHIF 347 (446)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~~l~~ll 347 (446)
..-. ..++ ..+..|.+|+++.|... +..+. ...+..+.+|+.+.+...-. .. ..-+
T Consensus 306 ~~i~--~I~~----------~aF~~c~~L~~i~lp~~-v~~I~------~~aF~~c~~L~~i~lp~~l~~I~----~~aF 362 (394)
T 4fs7_A 306 DSVK--FIGE----------EAFESCTSLVSIDLPYL-VEEIG------KRSFRGCTSLSNINFPLSLRKIG----ANAF 362 (394)
T ss_dssp TTCC--EECT----------TTTTTCTTCCEECCCTT-CCEEC------TTTTTTCTTCCEECCCTTCCEEC----TTTB
T ss_pred cccc--eech----------hhhcCCCCCCEEEeCCc-ccEEh------HHhccCCCCCCEEEECccccEeh----HHHh
Confidence 2110 0011 23567788888887533 22222 23455667777776642210 01 1235
Q ss_pred hhCCCCceEEEec
Q 013263 348 SRMPKLESIVFEE 360 (446)
Q Consensus 348 ~~~p~L~~L~i~~ 360 (446)
.+|++|+++.|..
T Consensus 363 ~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 363 QGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEEEEEG
T ss_pred hCCCCCCEEEECC
Confidence 6889999888854
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.44 E-value=1.3 Score=34.20 Aligned_cols=50 Identities=22% Similarity=0.145 Sum_probs=35.5
Q ss_pred cCCCcccccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEec-cchHHHH
Q 013263 132 ELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTID-NNFSDWL 183 (446)
Q Consensus 132 ~lp~~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~-~~~l~~l 183 (446)
.+|..+ -++|++|+|++|.+..++. +..+++|++|+|.++.+. +-.+..+
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l 76 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPL 76 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHH
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHH
Confidence 566533 2468999999998877643 457889999999998887 5554443
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=55.45 E-value=9.9 Score=35.40 Aligned_cols=96 Identities=13% Similarity=0.175 Sum_probs=53.9
Q ss_pred CceEEEEEecCCccccCCCc-ccccCcccEEEeccee--cccCCCccCCCCccEEEeeeE-E-eccchHHHHhccCCCcc
Q 013263 117 NVREIEISLNDDECIELPHC-IYTCKTLEVLKLDMNF--FIKTPPTIFFPSAKILHVILN-T-IDNNFSDWLFSKCPALE 191 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~--~~~~~~~~~l~~L~~L~L~~~-~-~~~~~l~~ll~~cp~Le 191 (446)
.++.+.+... ...+... +.+|++|+.+.+.... +.. ..+.+|.+|++++|... . +.+. .+.+|.+|+
T Consensus 266 ~L~~i~lp~~---~~~I~~~aF~~c~~L~~i~l~~~i~~I~~-~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~ 337 (394)
T 4gt6_A 266 YLASVKMPDS---VVSIGTGAFMNCPALQDIEFSSRITELPE-SVFAGCISLKSIDIPEGITQILDD----AFAGCEQLE 337 (394)
T ss_dssp SCCEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCEECT-TTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCC
T ss_pred cccEEecccc---cceecCcccccccccccccCCCcccccCc-eeecCCCCcCEEEeCCcccEehHh----HhhCCCCCC
Confidence 5666655321 1233333 3458888888886431 222 34557888888888532 1 2222 356888888
Q ss_pred eEEEEeeEeCCCCceEEE-eccCcceEEEeec
Q 013263 192 DLSIKGYIYGTDSVTLNI-PSLTLKRLRLELE 222 (446)
Q Consensus 192 ~L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~ 222 (446)
++.|-.. ...+ ..-.. .|++|+.+.+..+
T Consensus 338 ~i~ip~s-v~~I-~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 338 RIAIPSS-VTKI-PESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEEECTT-CCBC-CGGGGTTCTTCCEEEESSC
T ss_pred EEEECcc-cCEE-hHhHhhCCCCCCEEEECCc
Confidence 8888442 1111 11112 3578888888765
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=55.36 E-value=2.4 Score=39.74 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=23.8
Q ss_pred cccceeEEeeccC--CcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCc
Q 013263 238 APNLEQLYIRDHG--PGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGT 306 (446)
Q Consensus 238 ~p~L~~L~l~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~ 306 (446)
+.+|+++.+-... .....+.++.+|+.+++.... ....-+..+.+|+.+.+..+.
T Consensus 333 C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~--------------~~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 333 CEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR--------------SQWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH--------------HHHHTCBCCCCC---------
T ss_pred CCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce--------------eehhhhhccCCCCEEEeCCCC
Confidence 4555555553221 123346677888877664321 111234567788888876543
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=50.57 E-value=15 Score=28.01 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=35.3
Q ss_pred CeeEEEEeCCccccccccccccCCCCCCCCccceEEEEeccc---ccHHHHHHHHhhCC
Q 013263 296 NIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA---CGWLSLAHIFSRMP 351 (446)
Q Consensus 296 ~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~---~~~~~l~~ll~~~p 351 (446)
+++.|.|+.+.+..+. .+.+..+++|+.|+|..+.. +...++...++..+
T Consensus 32 ~l~~L~Ls~N~l~~l~------~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~ 84 (130)
T 3rfe_A 32 DTTELVLTGNNLTALP------PGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRP 84 (130)
T ss_dssp TCSEEECTTSCCSSCC------TTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSS
T ss_pred CCCEEECCCCcCCccC------hhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCc
Confidence 6889999988887665 34455677888888886542 46667777766554
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=39.83 E-value=13 Score=34.25 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=53.7
Q ss_pred CCceEEEEEecCCccccCCCc-ccccCcccEEEecceecc-cCCCccCCCCccEEEeeeEEec-cchHHHHhccCCCcce
Q 013263 116 RNVREIEISLNDDECIELPHC-IYTCKTLEVLKLDMNFFI-KTPPTIFFPSAKILHVILNTID-NNFSDWLFSKCPALED 192 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~ 192 (446)
..++++.+... ...+... +.+|.+|+.+.+....-. ....+.+|++|+++.+....+. -+ ...+.+|.+|+.
T Consensus 240 ~~L~~i~lp~~---v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~--~~aF~~c~~L~~ 314 (379)
T 4h09_A 240 KALDEIAIPKN---VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLE--PRVFMDCVKLSS 314 (379)
T ss_dssp SSCCEEEECTT---CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEEC--TTTTTTCTTCCE
T ss_pred ccceEEEcCCC---ccEeCccccceeehhccccccccceeccccccccccccccccccccccceeh--hhhhcCCCCCCE
Confidence 35777766322 2233333 335888888888654211 1134567888998888654322 01 123578999998
Q ss_pred EEEEeeEeCCCCceEEE----eccCcceEEEe
Q 013263 193 LSIKGYIYGTDSVTLNI----PSLTLKRLRLE 220 (446)
Q Consensus 193 L~L~~~~~~~~~~~~~i----~~~~L~~L~i~ 220 (446)
+.|-. .+ ..+.- .|.+|+.+.+-
T Consensus 315 i~lp~----~l-~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 315 VTLPT----AL-KTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECCT----TC-CEECTTTTTTCTTCCCCCCC
T ss_pred EEcCc----cc-cEEHHHHhhCCCCCCEEEEC
Confidence 88743 22 22221 24677777664
No 169
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=39.64 E-value=25 Score=21.13 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=15.4
Q ss_pred CCCcCCCCchHHHHHHhcCCC
Q 013263 7 TEDRISCLPNAILCHILSFLP 27 (446)
Q Consensus 7 ~~d~is~LPdelL~~Ils~L~ 27 (446)
..+-|+.||.||-..|++--.
T Consensus 17 D~eVF~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSGKS 37 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTCCC
T ss_pred CHHHHHHCcHHHHHHHHhcch
Confidence 445788888888888887543
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=38.63 E-value=11 Score=34.96 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=49.6
Q ss_pred ccccCcccEEEeccee--cccCCCccCCCCccEEEeeeE-E-eccchHHHHhccCCCcceEEEEeeEeCCCCceEE---E
Q 013263 137 IYTCKTLEVLKLDMNF--FIKTPPTIFFPSAKILHVILN-T-IDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN---I 209 (446)
Q Consensus 137 l~~~~~L~~L~L~~~~--~~~~~~~~~l~~L~~L~L~~~-~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~---i 209 (446)
+..|.+|+.+.+.... +.. ..+.+|.+|++++|... . +.+ ..+.+|.+|+.+.+-.+ + ..+. .
T Consensus 293 F~~~~~L~~i~l~~~i~~I~~-~aF~~c~~L~~i~lp~~v~~I~~----~aF~~c~~L~~i~lp~~----l-~~I~~~aF 362 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSVKFIGE-EAFESCTSLVSIDLPYLVEEIGK----RSFRGCTSLSNINFPLS----L-RKIGANAF 362 (394)
T ss_dssp TTTCTTCCEEEECTTCCEECT-TTTTTCTTCCEECCCTTCCEECT----TTTTTCTTCCEECCCTT----C-CEECTTTB
T ss_pred ccccccccccccccccceech-hhhcCCCCCCEEEeCCcccEEhH----HhccCCCCCCEEEECcc----c-cEehHHHh
Confidence 3459999999986541 222 45568899999988532 1 222 23678999999988542 2 2221 1
Q ss_pred -eccCcceEEEeec
Q 013263 210 -PSLTLKRLRLELE 222 (446)
Q Consensus 210 -~~~~L~~L~i~~~ 222 (446)
.|++|+.+.+..+
T Consensus 363 ~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 363 QGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEEEEEGG
T ss_pred hCCCCCCEEEECCC
Confidence 3588999988754
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=23.23 E-value=42 Score=30.67 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=49.7
Q ss_pred ccccCcccEEEeccee--cccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEE----Ee
Q 013263 137 IYTCKTLEVLKLDMNF--FIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN----IP 210 (446)
Q Consensus 137 l~~~~~L~~L~L~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~----i~ 210 (446)
+++|.+|+.+.+-... +.. ..+.++.+|+.+.+...--.-+ ...+.+|++|+.+.+.++. + ..+. ..
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~-~aF~~~~~l~~i~l~~~i~~i~--~~aF~~c~~L~~i~l~~~~---i-~~I~~~aF~~ 308 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGS-FLLQNCTALKTLNFYAKVKTVP--YLLCSGCSNLTKVVMDNSA---I-ETLEPRVFMD 308 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECT-TTTTTCTTCCEEEECCCCSEEC--TTTTTTCTTCCEEEECCTT---C-CEECTTTTTT
T ss_pred ccCCccceEEEcCCCccEeCc-cccceeehhccccccccceecc--ccccccccccccccccccc---c-ceehhhhhcC
Confidence 3569999999986542 222 4455788999998864311111 1246789999999997532 2 2221 13
Q ss_pred ccCcceEEEee
Q 013263 211 SLTLKRLRLEL 221 (446)
Q Consensus 211 ~~~L~~L~i~~ 221 (446)
+.+|+.+.+..
T Consensus 309 c~~L~~i~lp~ 319 (379)
T 4h09_A 309 CVKLSSVTLPT 319 (379)
T ss_dssp CTTCCEEECCT
T ss_pred CCCCCEEEcCc
Confidence 57899888854
Done!