BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013264
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 13/149 (8%)
Query: 154 PMFCQCVAVPAS---RKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210
PM + + V + R L +GG+D + Y + + WR + M+ RS
Sbjct: 155 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE----RNEWRMITAMNTIRSGA 210
Query: 211 ACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFF 270
V+ + + AGG+DGQ + L S E YDVE + W + M R G+ + R +
Sbjct: 211 GVCVL-HNCIYAAGGYDGQ-DQLNSVERYDVETETWTFVAPMKHRR-SALGITVHQGRIY 267
Query: 271 VVSGYGTESQGRFKPDAECYDPKTGSWSK 299
V+ GY + F ECYDP T +WS+
Sbjct: 268 VLGGYDGHT---FLDSVECYDPDTDTWSE 293
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 197 WRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEER 256
W V PM R AV+ V GG DG N L SAE Y E +EWRM+ M+ R
Sbjct: 150 WHLVAPMLTRRIGVGVAVLNRLLYAV-GGFDG-TNRLNSAECYYPERNEWRMITAMNTIR 207
Query: 257 DECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWS 298
GVC+ + + GY + Q E YD +T +W+
Sbjct: 208 SGA-GVCVLHNCIYAAGGYDGQDQ---LNSVERYDVETETWT 245
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 126 RTPLQYGLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDV 185
R L Y L +N S+GTW R+ CV L +GG + + + D
Sbjct: 36 RQSLSY-LEAYNPSDGTWLRLADLQVPRSGLAGCVV---GGLLYAVGGRNN-SPDGNTDS 90
Query: 186 YVLDMVN-NSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEAD 244
LD N +++W PMSV R+ V+ V G H + S E Y+ E D
Sbjct: 91 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH--NSVERYEPERD 148
Query: 245 EWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSW 297
EW ++ M R GV + + V G+ + R AECY P+ W
Sbjct: 149 EWHLVAPMLTRRIGV-GVAVLNRLLYAVGGF--DGTNRLN-SAECYYPERNEW 197
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 220 VCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTES 279
+ AGG+ + +L E Y+ W L ++ R G C+ G + V G
Sbjct: 28 IYTAGGY--FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAG-CVVGGLLYAVGGRNNSP 84
Query: 280 QGRFKPDA-ECYDPKTGSWS 298
G A +CY+P T WS
Sbjct: 85 DGNTDSSALDCYNPMTNQWS 104
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 197 WRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEER 256
W V PM RS V + V GG+DG L S E YD + D W + M R
Sbjct: 244 WTFVAPMKHRRSALGI-TVHQGRIYVLGGYDGHT-FLDSVECYDPDTDTWSEVTRMTSGR 301
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 13/149 (8%)
Query: 154 PMFCQCVAVPAS---RKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210
PM + + V + R L +GG+D + Y + + WR + M+ RS
Sbjct: 154 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE----RNEWRMITAMNTIRSGA 209
Query: 211 ACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFF 270
V+ + + AGG+DGQ + L S E YDVE + W + M R G+ + R +
Sbjct: 210 GVCVL-HNCIYAAGGYDGQ-DQLNSVERYDVETETWTFVAPMKHRRSAL-GITVHQGRIY 266
Query: 271 VVSGYGTESQGRFKPDAECYDPKTGSWSK 299
V+ GY + F ECYDP T +WS+
Sbjct: 267 VLGGYDGHT---FLDSVECYDPDTDTWSE 292
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 197 WRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEER 256
W V PM R AV+ V GG DG N L SAE Y E +EWRM+ M+ R
Sbjct: 149 WHLVAPMLTRRIGVGVAVLNRLLYAV-GGFDG-TNRLNSAECYYPERNEWRMITAMNTIR 206
Query: 257 DECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWS 298
GVC+ + + GY + Q E YD +T +W+
Sbjct: 207 SGA-GVCVLHNCIYAAGGYDGQDQ---LNSVERYDVETETWT 244
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 126 RTPLQYGLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDV 185
R L Y L +N S+GTW R+ CV L +GG + + + D
Sbjct: 35 RQSLSY-LEAYNPSDGTWLRLADLQVPRSGLAGCVV---GGLLYAVGGRNN-SPDGNTDS 89
Query: 186 YVLDMVN-NSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEAD 244
LD N +++W PMSV R+ V+ V G H + S E Y+ E D
Sbjct: 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH--NSVERYEPERD 147
Query: 245 EWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSW 297
EW ++ M R GV + + V G+ + R AECY P+ W
Sbjct: 148 EWHLVAPMLTRRIGV-GVAVLNRLLYAVGGF--DGTNRLN-SAECYYPERNEW 196
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 220 VCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTES 279
+ AGG+ + +L E Y+ W L ++ R G C+ G + V G
Sbjct: 27 IYTAGGY--FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAG-CVVGGLLYAVGGRNNSP 83
Query: 280 QGRFKPDA-ECYDPKTGSWS 298
G A +CY+P T WS
Sbjct: 84 DGNTDSSALDCYNPMTNQWS 103
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 197 WRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEER 256
W V PM RS V + V GG+DG L S E YD + D W + M R
Sbjct: 243 WTFVAPMKHRRSALGI-TVHQGRIYVLGGYDGHT-FLDSVECYDPDTDTWSEVTRMTSGR 300
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 13/149 (8%)
Query: 154 PMFCQCVAVPAS---RKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210
PM + + V + R L +GG+D + Y + + WR + PM+ RS
Sbjct: 148 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE----RNEWRMITPMNTIRSGA 203
Query: 211 ACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFF 270
V+ + + AGG+DGQ + L S E YDVE + W + M R G+ + + +
Sbjct: 204 GVCVL-HNCIYAAGGYDGQ-DQLNSVERYDVETETWTFVAPMRHHRSAL-GITVHQGKIY 260
Query: 271 VVSGYGTESQGRFKPDAECYDPKTGSWSK 299
V+ GY + F ECYDP + +WS+
Sbjct: 261 VLGGYDGHT---FLDSVECYDPDSDTWSE 286
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 197 WRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEER 256
W V PM R AV+ V GG DG N L SAE Y E +EWRM+ M+ R
Sbjct: 143 WHLVAPMLTRRIGVGVAVLNRLLYAV-GGFDG-TNRLNSAECYYPERNEWRMITPMNTIR 200
Query: 257 DECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWS 298
GVC+ + + GY + Q E YD +T +W+
Sbjct: 201 SG-AGVCVLHNCIYAAGGYDGQDQ---LNSVERYDVETETWT 238
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 126 RTPLQYGLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDV 185
R L Y L +N SNG+W R+ CV L +GG + + + D
Sbjct: 29 RQSLSY-LEAYNPSNGSWLRLADLQVPRSGLAGCV---VGGLLYAVGGRNN-SPDGNTDS 83
Query: 186 YVLDMVN-NSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEAD 244
LD N +++W MSV R+ V+ V G H ++ S E Y+ E D
Sbjct: 84 SALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHS--SVERYEPERD 141
Query: 245 EWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSW 297
EW ++ M R GV + + V G+ + R AECY P+ W
Sbjct: 142 EWHLVAPMLTRRIGV-GVAVLNRLLYAVGGF--DGTNRLN-SAECYYPERNEW 190
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 220 VCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTES 279
+ AGG+ + +L E Y+ W L ++ R G C+ G + V G
Sbjct: 21 IYTAGGY--FRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAG-CVVGGLLYAVGGRNNSP 77
Query: 280 QGRFKPDA-ECYDPKTGSWS 298
G A +CY+P T WS
Sbjct: 78 DGNTDSSALDCYNPMTNQWS 97
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 197 WRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEER 256
W V PM RS V + V GG+DG L S E YD ++D W + M R
Sbjct: 237 WTFVAPMRHHRSALG-ITVHQGKIYVLGGYDGHT-FLDSVECYDPDSDTWSEVTRMTSGR 294
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 13/142 (9%)
Query: 159 CVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGAS 218
C A R + GG+ +L Y+ ++ W R+ + V RS A VVG
Sbjct: 12 CRAPKVGRLIYTAGGYFRQSLS-----YLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGL 66
Query: 219 TVCVAGGH---DGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGY 275
V G + DG ++ + + Y+ ++W M R+ ++G + V +
Sbjct: 67 LYAVGGRNNSPDGNTDS-SALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSH 125
Query: 276 GTESQGRFKPDAECYDPKTGSW 297
G E Y+P+ W
Sbjct: 126 GCIHH----SSVERYEPERDEW 143
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 13/149 (8%)
Query: 154 PMFCQCVAVPAS---RKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210
PM + + V + R L +GG+D + Y + + WR + PM+ RS
Sbjct: 147 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE----RNEWRMITPMNTIRSGA 202
Query: 211 ACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFF 270
V+ + + AGG+DGQ + L S E YDVE + W + M R G+ + + +
Sbjct: 203 GVCVL-HNCIYAAGGYDGQ-DQLNSVERYDVETETWTFVAPMRHHRSAL-GITVHQGKIY 259
Query: 271 VVSGYGTESQGRFKPDAECYDPKTGSWSK 299
V+ GY + F ECYDP + +WS+
Sbjct: 260 VLGGYDGHT---FLDSVECYDPDSDTWSE 285
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 197 WRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEER 256
W V PM R AV+ V GG DG N L SAE Y E +EWRM+ M+ R
Sbjct: 142 WHLVAPMLTRRIGVGVAVLNRLLYAV-GGFDG-TNRLNSAECYYPERNEWRMITPMNTIR 199
Query: 257 DECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWS 298
GVC+ + + GY + Q E YD +T +W+
Sbjct: 200 SG-AGVCVLHNCIYAAGGYDGQDQ---LNSVERYDVETETWT 237
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 126 RTPLQYGLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDV 185
R L Y L +N SNG+W R+ CV L +GG + + + D
Sbjct: 28 RQSLSY-LEAYNPSNGSWLRLADLQVPRSGLAGCV---VGGLLYAVGGRNN-SPDGNTDS 82
Query: 186 YVLDMVN-NSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEAD 244
LD N +++W MSV R+ V+ V G H ++ S E Y+ E D
Sbjct: 83 SALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHS--SVERYEPERD 140
Query: 245 EWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSW 297
EW ++ M R GV + + V G+ + R AECY P+ W
Sbjct: 141 EWHLVAPMLTRRIGV-GVAVLNRLLYAVGGF--DGTNRLN-SAECYYPERNEW 189
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 220 VCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTES 279
+ AGG+ + +L E Y+ W L ++ R G C+ G + V G
Sbjct: 20 IYTAGGY--FRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAG-CVVGGLLYAVGGRNNSP 76
Query: 280 QGRFKPDA-ECYDPKTGSWS 298
G A +CY+P T WS
Sbjct: 77 DGNTDSSALDCYNPMTNQWS 96
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 197 WRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEER 256
W V PM RS V + V GG+DG L S E YD ++D W + M R
Sbjct: 236 WTFVAPMRHHRSALG-ITVHQGKIYVLGGYDGH-TFLDSVECYDPDSDTWSEVTRMTSGR 293
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 13/142 (9%)
Query: 159 CVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGAS 218
C A R + GG+ +L Y+ ++ W R+ + V RS A VVG
Sbjct: 11 CRAPKVGRLIYTAGGYFRQSLS-----YLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGL 65
Query: 219 TVCVAGGH---DGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGY 275
V G + DG ++ + + Y+ ++W M R+ ++G + V +
Sbjct: 66 LYAVGGRNNSPDGNTDS-SALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSH 124
Query: 276 GTESQGRFKPDAECYDPKTGSW 297
G E Y+P+ W
Sbjct: 125 GCIHH----SSVERYEPERDEW 142
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 165 SRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAG 224
+R L +GG+D + Y + + WR + + RS V+ + + AG
Sbjct: 168 NRLLYAVGGFDGTNRLNSAECYYPER----NEWRXITAXNTIRSGAGVCVL-HNCIYAAG 222
Query: 225 GHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFK 284
G+DGQ + L S E YDVE + W + R G+ + R +V+ GY + F
Sbjct: 223 GYDGQ-DQLNSVERYDVETETWTFVAPXKHRR-SALGITVHQGRIYVLGGYDGHT---FL 277
Query: 285 PDAECYDPKTGSWSK 299
ECYDP T +WS+
Sbjct: 278 DSVECYDPDTDTWSE 292
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 12/173 (6%)
Query: 126 RTPLQYGLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDV 185
R L Y L +N SNGTW R+ CV L +GG + + + D
Sbjct: 35 RQSLSY-LEAYNPSNGTWLRLADLQVPRSGLAGCV---VGGLLYAVGGRNN-SPDGNTDS 89
Query: 186 YVLDMVN-NSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEAD 244
LD N +++W P SV R+ V+ V G H + S E Y+ E D
Sbjct: 90 SALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHH--NSVERYEPERD 147
Query: 245 EWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSW 297
EW ++ R GV + + V G+ + R AECY P+ W
Sbjct: 148 EWHLVAPXLTRRIGV-GVAVLNRLLYAVGGF--DGTNRLN-SAECYYPERNEW 196
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 220 VCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTES 279
+ AGG+ + +L E Y+ W L ++ R G C+ G + V G
Sbjct: 27 IYTAGGY--FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAG-CVVGGLLYAVGGRNNSP 83
Query: 280 QGRFKPDA-ECYDPKTGSWS 298
G A +CY+P T WS
Sbjct: 84 DGNTDSSALDCYNPXTNQWS 103
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 161 AVPASRKLLLIGGWDPITLEPVPDVYVLDMV-NNSSRWRRVKPMSVARSFFACAVVGAST 219
+V ++ +IGG+D + + V LD + W V PM+V R +G
Sbjct: 58 SVSLHDRIYVIGGYDGRS--RLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLG-DM 114
Query: 220 VCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTES 279
+ V+GG DG + S E YD D+W ML +M R E G+ + + + GY +
Sbjct: 115 IYVSGGFDGSRRH-TSMERYDPNIDQWSMLGDMQTAR-EGAGLVVASGVIYCLGGYDGLN 172
Query: 280 QGRFKPDAECYDPKTGSWSKF----------------DHVWPFPSLSPRGSTATITSYRL 323
E YDP TG W+ DH++ +++ +Y +
Sbjct: 173 ---ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNI 229
Query: 324 QQHQW 328
+ W
Sbjct: 230 RTDSW 234
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 162 VPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVC 221
V AS + +GG+D + + + Y ++ W V PM+ RS A++ +
Sbjct: 156 VVASGVIYCLGGYDGLNILNSVEKYD----PHTGHWTNVTPMATKRSGAGVALLN-DHIY 210
Query: 222 VAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQG 281
V GG DG + L S E Y++ D W + M R L G R + ++GY S
Sbjct: 211 VVGGFDGTAH-LSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRG-RLYAIAGYDGNS-- 266
Query: 282 RFKPDAECYDPKTGSW 297
ECYDP SW
Sbjct: 267 -LLSSIECYDPIIDSW 281
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 213 AVVGASTVC-VAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFV 271
A +GA+ V V GG Q++ + E YD + EW LP + +R V L DR +V
Sbjct: 9 ARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLH-DRIYV 67
Query: 272 VSGYGTESQGRFKPDAECYD 291
+ GY S+ EC D
Sbjct: 68 IGGYDGRSR---LSSVECLD 84
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 18/140 (12%)
Query: 132 GLTIFNASNGTWERIRPHVGR----IPMFCQCVAVPAS---RKLLLIGGWDPITLEPVPD 184
GL I N+ E+ PH G PM + + + ++GG+D +
Sbjct: 170 GLNILNSV----EKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVE 225
Query: 185 VYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEAD 244
Y + + W V M+ R + V+ +AG +DG + L S E YD D
Sbjct: 226 AYNI----RTDSWTTVTSMTTPRCYVGATVLRGRLYAIAG-YDGN-SLLSSIECYDPIID 279
Query: 245 EWRMLPEMDEERDECQGVCL 264
W ++ M +R + GVC+
Sbjct: 280 SWEVVTSMGTQRCDA-GVCV 298
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 216 GASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGY 275
G + V GG+D +K +L YD +D W P+M R + R F + G
Sbjct: 235 GNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGS 289
Query: 276 GTESQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLW 330
G S G F+ + E Y P + +W+ P ++P + YR H WL+
Sbjct: 290 G--SGGVFEKNGEVYSPSSKTWTSL----PNAKVNPMLTADKQGLYRSDNHAWLF 338
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 155 MFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAV 214
MFC +++ + ++++ GG D + D ++S W M VAR + + A
Sbjct: 226 MFCPGISMDGNGQIVVTGGND------AKKTSLYD--SSSDSWIPGPDMQVARGYQSSAT 277
Query: 215 VGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPE 251
+ V GG K+ EVY + W LP
Sbjct: 278 MSDGRVFTIGGSGSGGVFEKNGEVYSPSSKTWTSLPN 314
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 216 GASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGY 275
G + V GG+D +K +L YD +D W P+M R + R F +
Sbjct: 235 GNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIG-- 287
Query: 276 GTESQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLW 330
G+ S G F+ + E Y P + +W+ P ++P + YR H WL+
Sbjct: 288 GSHSGGVFEKNGEVYSPSSKTWTSL----PNAKVNPMLTADKQGLYRSDNHAWLF 338
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 155 MFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAV 214
MFC +++ + ++++ GG D + D ++S W M VAR + + A
Sbjct: 226 MFCPGISMDGNGQIVVTGGND------AKKTSLYD--SSSDSWIPGPDMQVARGYQSSAT 277
Query: 215 VGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPE 251
+ V GG K+ EVY + W LP
Sbjct: 278 MSDGRVFTIGGSHSGGVFEKNGEVYSPSSKTWTSLPN 314
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 216 GASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGY 275
G + V GG+D +K +L YD +D W P+M R + R F +
Sbjct: 235 GNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIG-- 287
Query: 276 GTESQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLW 330
G+ S G F+ + E Y P + +W+ P ++P + YR H WL+
Sbjct: 288 GSFSGGVFEKNGEVYSPSSKTWTSL----PNAKVNPMLTADKQGLYRSDNHAWLF 338
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 216 GASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGY 275
G + V GG+D +K +L YD +D W P+M R + R F +
Sbjct: 252 GNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIG-- 304
Query: 276 GTESQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLW 330
G+ S G F+ + E Y P + +W+ P ++P + YR H WL+
Sbjct: 305 GSWSGGVFEKNGEVYSPSSKTWTSL----PNAKVNPMLTADKQGLYRSDNHAWLF 355
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 216 GASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGY 275
G + V GG+D +K +L YD +D W P+M R + R F +
Sbjct: 235 GNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIG-- 287
Query: 276 GTESQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLW 330
G+ S G F+ + E Y P + +W+ P ++P + YR H WL+
Sbjct: 288 GSWSGGVFEKNGEVYSPSSKTWTSL----PNAKVNPMLTADKQGLYRSDNHAWLF 338
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 216 GASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGY 275
G + V GG+D +K +L YD +D W P+M R + R F +
Sbjct: 235 GNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIG-- 287
Query: 276 GTESQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLW 330
G+ S G F+ + E Y P + +W+ P ++P + YR H WL+
Sbjct: 288 GSWSGGVFEKNGEVYSPSSKTWTSL----PNAKVNPMLTADKQGLYRSDNHAWLF 338
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 34/214 (15%)
Query: 133 LTIFNASNGTWERIRPHVGR------IPMFCQCVAV-PASRKLLLIGGWDPITLEPVPDV 185
+ +F AS ++ +P +GR +P+ A+ P S ++L+ + E P
Sbjct: 165 INVFQAS--SYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFEGSPGG 222
Query: 186 YVLDMVNNSSRWR------RVKPMSVARSFFAC---AVVGASTVCVAGGHDGQKNALKSA 236
L +S W + ++V + C ++ G + V GG+D +K +L
Sbjct: 223 ITL-----TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL--- 274
Query: 237 EVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGS 296
YD +D W P+M R + R F + G+ S G F+ + E Y P + +
Sbjct: 275 --YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIG--GSFSGGVFEKNGEVYSPSSKT 330
Query: 297 WSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLW 330
W+ P ++P + Y+ H WL+
Sbjct: 331 WTSL----PNAKVNPMLTADKQGLYKSDNHAWLF 360
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 168 LLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHD 227
L +GG+D + + + V + N W + MS RS V+ + + GGHD
Sbjct: 158 LYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVLN-NLLYAVGGHD 214
Query: 228 GQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDA 287
G KS EVYD + WR + +M+ R GVC +VV G +
Sbjct: 215 GPL-VRKSVEVYDPTTNAWRQVADMNMCRRNA-GVCAVNGLLYVVGG---DDGSCNLASV 269
Query: 288 ECYDPKTGSWS 298
E Y+P T W+
Sbjct: 270 EYYNPTTDKWT 280
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
Query: 168 LLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHD 227
L +GG+D T + Y + S+ W V PM+ RS VVG V G
Sbjct: 111 LYAVGGFDGSTGLSSVEAYNI----KSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV 166
Query: 228 GQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDA 287
+ L + E Y+ +EW + EM R GV + + + V G+ +
Sbjct: 167 ASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVLNNLLYAVGGHDGP---LVRKSV 222
Query: 288 ECYDPKTGSWSK 299
E YDP T +W +
Sbjct: 223 EVYDPTTNAWRQ 234
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 168 LLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHD 227
++++GG P + + V D RW +V + +R A V A V GG +
Sbjct: 18 MVVVGGQAP---KAIRSVECYDF--KEERWHQVAELP-SRRCRAGMVYMAGLVFAVGGFN 71
Query: 228 GQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDA 287
G +++ + YD D+W + M + R L G + V G+ +
Sbjct: 72 GSLR-VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNG-LLYAVGGFDGSTG---LSSV 126
Query: 288 ECYDPKTGSWSKFDHVWPFPS 308
E Y+ K+ W HV P +
Sbjct: 127 EAYNIKSNEWF---HVAPMNT 144
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 15/168 (8%)
Query: 136 FNASNGTWERIR-PHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNS 194
FN + +W IR P R C V + ++GG L P+ + ++V +S
Sbjct: 29 FNPKDYSWTDIRCPFEKRRDAAC----VFWDNVVYILGG---SQLFPIKRMDCYNVVKDS 81
Query: 195 SRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDE 254
+ ++ P + S ACA G + +GG + +AL E YD + W P M
Sbjct: 82 -WYSKLGPPTPRDSLAACAAEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT 138
Query: 255 ERDECQGVCLEGDRFFVVSG--YGTESQGRFKPDAECYDPKTGSWSKF 300
+R C +E + V G G GR E YDP T +W++
Sbjct: 139 QR--CSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL 184
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 62/174 (35%), Gaps = 8/174 (4%)
Query: 185 VYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQK---NALKSAEVYDV 241
+Y+ + + + KP + + V + V GG G L S EVYD
Sbjct: 117 LYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDP 176
Query: 242 EADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301
+ W L M E R G+ D+ F V G G + E YD K W K
Sbjct: 177 ATETWTELCPMIEARKN-HGLVFVKDKIFAVG--GQNGLGGLD-NVEYYDIKLNEW-KMV 231
Query: 302 HVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQNGEVVKGKIVSSIVPLP 355
P+ ++ + + Y L Q + LG + N E K S + P
Sbjct: 232 SPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFP 285
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 194 SSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMD 253
+ W + PM AR V + GG +G L + E YD++ +EW+M+ M
Sbjct: 178 TETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGL-GGLDNVEYYDIKLNEWKMVSPMP 235
Query: 254 EE--RDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDHVWPFPSLS 310
+ +C V G +V++G+ + GR E Y+ +T W V FP S
Sbjct: 236 WKGVTVKCAAV---GSIVYVLAGF--QGVGRLGHILE-YNTETDKWVANSKVRAFPVTS 288
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 196 RWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEE 255
W+ + PM ARS F V + AG D SAEVY + ++W +E
Sbjct: 176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTD--TGLTSSAEVYSITDNKWAPFEAFPQE 233
Query: 256 RDECQGVCLEGDRFFVVSGYGT 277
R V L G + + G+ T
Sbjct: 234 RSSLSLVSLVG-TLYAIGGFAT 254
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 220 VCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTES 279
V V GG + L VYD + EW+ L M R G + R V +G +
Sbjct: 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS-LFGATVHDGRIIVAAGV---T 206
Query: 280 QGRFKPDAECYDPKTGSWSKFD 301
AE Y W+ F+
Sbjct: 207 DTGLTSSAEVYSITDNKWAPFE 228
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 197 WRRVKPMSVARSFFACAVVGASTVCVAGG--HDGQKNALKSAEVYDVEADEWRMLPEMDE 254
W+ + PM RS F A+ + +AGG DG S E +D++ ++W ++ E +
Sbjct: 187 WKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLS---ASVEAFDLKTNKWEVMTEFPQ 242
Query: 255 ERDECQGVCLEGDRFFVVSGYG 276
ER V L G + + G+
Sbjct: 243 ERSSISLVSLAG-SLYAIGGFA 263
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 60/171 (35%), Gaps = 43/171 (25%)
Query: 186 YVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADE 245
Y + N SS W + P+ AR F V VAG + +L S YD A +
Sbjct: 79 YFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAK 138
Query: 246 WRMLPEMDEERDECQGVCLEGDRFFVVSGYG-TESQGRFKPDAEC------YDPKTGSWS 298
W E + + ++ V+S G G D +C Y+PK G W
Sbjct: 139 WS----------EVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188
Query: 299 KFDHVWPFPSLSPR---------------------GSTATITSYRLQQHQW 328
P +PR G +A++ ++ L+ ++W
Sbjct: 189 DLA-----PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 214 VVGASTVCVAGG-HDGQKNALKSAEVYDVEAD----EWRMLPEMDEERDECQGVCLEG-- 266
V + V V GG + ++N + + Y + D EW LP + R CL G
Sbjct: 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR------CLFGLG 106
Query: 267 ---DRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDHV 303
D+ +VV+G +++ CYDP WS+ ++
Sbjct: 107 EVDDKIYVVAGKDLQTEASLD-SVLCYDPVAAKWSEVKNL 145
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 256 RDECQGVCLEGDRFFVVSGYGTESQG--RFKPDAECYDPKTGSWSKFDHVWPFPSLSPRG 313
RD+ ++G+ +V G G S+G + D Y+PKT SW K S +P G
Sbjct: 56 RDQATSAFIDGN-LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVK------LXSHAPXG 108
Query: 314 STATIT 319
+T
Sbjct: 109 XAGHVT 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,184,644
Number of Sequences: 62578
Number of extensions: 522213
Number of successful extensions: 1105
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 53
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)