Query 013264
Match_columns 446
No_of_seqs 399 out of 3477
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 3.4E-41 7.3E-46 344.3 28.2 255 130-438 300-563 (571)
2 PHA02713 hypothetical protein; 100.0 2.9E-39 6.3E-44 331.5 28.2 244 132-430 273-542 (557)
3 PLN02153 epithiospecifier prot 100.0 5.1E-34 1.1E-38 277.9 30.1 253 139-428 5-291 (341)
4 PHA03098 kelch-like protein; P 100.0 2.4E-34 5.1E-39 297.1 27.9 253 132-439 265-529 (534)
5 KOG4441 Proteins containing BT 100.0 1.4E-34 3E-39 295.8 24.2 223 164-437 283-516 (571)
6 PLN02193 nitrile-specifier pro 100.0 3.9E-33 8.6E-38 281.6 33.2 259 133-428 139-417 (470)
7 PHA02790 Kelch-like protein; P 100.0 1.9E-33 4.2E-38 284.6 25.8 226 136-428 251-477 (480)
8 PHA02713 hypothetical protein; 100.0 9.3E-33 2E-37 283.5 23.4 199 131-350 320-542 (557)
9 PLN02153 epithiospecifier prot 100.0 1.2E-31 2.5E-36 261.4 29.5 237 131-391 50-327 (341)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 4.9E-32 1.1E-36 264.8 27.0 258 146-437 1-315 (346)
11 TIGR03548 mutarot_permut cycli 100.0 2.1E-31 4.5E-36 257.7 27.6 229 132-391 40-316 (323)
12 PLN02193 nitrile-specifier pro 100.0 1.1E-30 2.4E-35 263.8 31.1 236 131-391 193-456 (470)
13 TIGR03547 muta_rot_YjhT mutatr 100.0 3.7E-31 8.1E-36 258.6 25.6 228 132-391 30-334 (346)
14 PRK14131 N-acetylneuraminic ac 100.0 2E-30 4.2E-35 255.6 27.1 262 142-437 18-337 (376)
15 TIGR03548 mutarot_permut cycli 100.0 3.4E-30 7.5E-35 249.2 27.4 208 155-389 4-234 (323)
16 PHA02790 Kelch-like protein; P 100.0 7.6E-31 1.7E-35 265.7 23.5 183 131-349 287-478 (480)
17 PRK14131 N-acetylneuraminic ac 100.0 2.9E-30 6.3E-35 254.4 26.7 228 132-391 51-356 (376)
18 KOG4693 Uncharacterized conser 100.0 9.2E-31 2E-35 229.3 17.6 233 155-428 14-283 (392)
19 PHA03098 kelch-like protein; P 100.0 1.2E-29 2.6E-34 262.1 24.5 200 131-349 311-519 (534)
20 KOG4693 Uncharacterized conser 100.0 9.3E-29 2E-33 216.8 19.4 236 131-390 44-314 (392)
21 KOG0379 Kelch repeat-containin 99.9 2.8E-25 6.1E-30 224.0 25.5 235 152-428 58-308 (482)
22 KOG1230 Protein containing rep 99.9 3.5E-25 7.5E-30 205.2 19.4 246 153-427 65-346 (521)
23 KOG4152 Host cell transcriptio 99.9 6.1E-24 1.3E-28 201.3 16.2 251 132-414 58-360 (830)
24 KOG0379 Kelch repeat-containin 99.9 2E-22 4.2E-27 203.4 25.7 238 132-390 89-344 (482)
25 KOG4152 Host cell transcriptio 99.9 2.8E-22 6.2E-27 190.1 16.8 274 141-441 17-330 (830)
26 KOG1230 Protein containing rep 99.9 2.7E-21 5.9E-26 179.5 18.4 198 130-337 97-318 (521)
27 COG3055 Uncharacterized protei 99.6 1.2E-13 2.5E-18 127.5 17.8 238 133-391 60-362 (381)
28 COG3055 Uncharacterized protei 99.5 4E-13 8.7E-18 124.0 17.3 174 145-338 29-240 (381)
29 KOG2437 Muskelin [Signal trans 99.3 2.5E-12 5.5E-17 122.8 6.2 191 140-338 238-459 (723)
30 PF13964 Kelch_6: Kelch motif 99.3 1E-11 2.3E-16 84.6 6.6 50 206-256 1-50 (50)
31 PF13964 Kelch_6: Kelch motif 99.1 1.2E-10 2.6E-15 79.3 6.5 50 154-207 1-50 (50)
32 PF01344 Kelch_1: Kelch motif; 99.1 1.5E-10 3.2E-15 77.8 4.8 47 206-253 1-47 (47)
33 KOG2437 Muskelin [Signal trans 99.0 1.6E-10 3.5E-15 110.7 2.5 188 193-390 237-459 (723)
34 PF13418 Kelch_4: Galactose ox 98.9 8.4E-10 1.8E-14 74.8 4.2 49 206-254 1-49 (49)
35 PF13415 Kelch_3: Galactose ox 98.9 3.5E-09 7.5E-14 71.7 6.1 49 165-215 1-49 (49)
36 PF07646 Kelch_2: Kelch motif; 98.9 5.1E-09 1.1E-13 70.9 6.5 47 206-253 1-49 (49)
37 PF01344 Kelch_1: Kelch motif; 98.8 5E-09 1.1E-13 70.3 4.6 47 154-204 1-47 (47)
38 PF12937 F-box-like: F-box-lik 98.8 2.1E-09 4.6E-14 72.0 2.1 43 17-59 1-43 (47)
39 PF13415 Kelch_3: Galactose ox 98.8 1.5E-08 3.3E-13 68.5 6.1 46 218-264 2-48 (49)
40 TIGR01640 F_box_assoc_1 F-box 98.8 2.6E-06 5.7E-11 78.2 21.8 140 183-335 14-162 (230)
41 PF07646 Kelch_2: Kelch motif; 98.7 3.7E-08 8E-13 66.6 6.4 46 255-301 1-46 (49)
42 smart00612 Kelch Kelch domain. 98.7 2.7E-08 5.9E-13 66.5 5.1 47 219-267 1-47 (47)
43 PF13418 Kelch_4: Galactose ox 98.7 3E-08 6.6E-13 67.1 4.3 49 154-205 1-49 (49)
44 PF07250 Glyoxal_oxid_N: Glyox 98.6 2.4E-06 5.1E-11 77.8 15.5 145 133-302 48-207 (243)
45 smart00612 Kelch Kelch domain. 98.6 1.1E-07 2.5E-12 63.4 5.2 46 167-216 1-46 (47)
46 smart00256 FBOX A Receptor for 98.6 3E-08 6.5E-13 64.3 2.0 39 20-58 1-39 (41)
47 PF00646 F-box: F-box domain; 98.6 1.7E-08 3.7E-13 68.0 0.8 44 17-60 3-46 (48)
48 PLN02772 guanylate kinase 98.4 2.9E-06 6.2E-11 82.0 11.0 84 154-244 24-110 (398)
49 PF07250 Glyoxal_oxid_N: Glyox 98.4 2.2E-05 4.7E-10 71.6 15.9 166 234-446 46-224 (243)
50 PLN02772 guanylate kinase 98.3 4.3E-06 9.4E-11 80.8 11.0 84 205-295 23-110 (398)
51 PF13854 Kelch_5: Kelch motif 98.3 1.9E-06 4.1E-11 56.0 5.4 40 203-243 1-41 (42)
52 PF13854 Kelch_5: Kelch motif 98.2 6.4E-06 1.4E-10 53.4 5.7 42 252-295 1-42 (42)
53 TIGR01640 F_box_assoc_1 F-box 97.9 0.003 6.6E-08 57.8 19.9 160 132-302 15-186 (230)
54 PF07893 DUF1668: Protein of u 97.5 0.0074 1.6E-07 58.7 17.1 120 164-302 75-216 (342)
55 PF03089 RAG2: Recombination a 97.2 0.013 2.9E-07 53.4 14.3 110 220-338 41-176 (337)
56 KOG2120 SCF ubiquitin ligase, 97.0 0.00024 5.2E-09 65.3 1.4 41 17-57 98-138 (419)
57 PF03089 RAG2: Recombination a 97.0 0.041 8.9E-07 50.4 15.2 109 167-277 39-175 (337)
58 PF07893 DUF1668: Protein of u 97.0 0.065 1.4E-06 52.1 17.8 115 133-256 88-221 (342)
59 PLN03215 ascorbic acid mannose 96.8 0.00049 1.1E-08 66.5 1.7 38 16-53 3-41 (373)
60 KOG2997 F-box protein FBX9 [Ge 96.4 0.0017 3.7E-08 60.1 1.7 46 17-62 107-157 (366)
61 PF12768 Rax2: Cortical protei 96.3 0.083 1.8E-06 49.6 12.5 109 181-302 14-130 (281)
62 PF12768 Rax2: Cortical protei 95.8 0.15 3.4E-06 47.8 12.1 109 220-336 1-111 (281)
63 PRK13684 Ycf48-like protein; P 95.5 2 4.3E-05 41.7 19.1 196 141-387 119-322 (334)
64 KOG0281 Beta-TrCP (transducin 95.3 0.0092 2E-07 55.8 1.7 44 16-59 74-121 (499)
65 PLN00033 photosystem II stabil 95.0 4.1 8.9E-05 40.5 20.7 199 140-387 165-390 (398)
66 PRK11138 outer membrane biogen 94.5 5.6 0.00012 39.5 22.1 136 132-299 171-320 (394)
67 PRK11138 outer membrane biogen 94.5 2.6 5.6E-05 41.9 17.1 111 162-301 66-188 (394)
68 PRK13684 Ycf48-like protein; P 94.4 5.4 0.00012 38.7 18.7 135 164-335 98-234 (334)
69 PF14870 PSII_BNR: Photosynthe 94.1 5.6 0.00012 37.9 18.6 200 139-387 89-295 (302)
70 PF14870 PSII_BNR: Photosynthe 94.0 5.9 0.00013 37.7 20.8 156 141-333 47-204 (302)
71 PF13360 PQQ_2: PQQ-like domai 92.6 7.5 0.00016 35.1 22.9 137 132-301 4-150 (238)
72 PRK04792 tolB translocation pr 92.4 11 0.00023 38.3 17.7 146 132-301 243-390 (448)
73 PF08450 SGL: SMP-30/Gluconola 92.3 9 0.0002 35.1 18.3 135 132-296 23-167 (246)
74 KOG0310 Conserved WD40 repeat- 91.7 8.5 0.00018 38.2 15.0 137 131-298 48-190 (487)
75 TIGR03300 assembly_YfgL outer 91.5 15 0.00033 36.1 21.2 136 132-299 156-305 (377)
76 PF03178 CPSF_A: CPSF A subuni 91.4 9.5 0.00021 36.6 15.5 131 166-320 42-181 (321)
77 PRK00178 tolB translocation pr 91.2 18 0.00038 36.4 19.8 146 132-301 224-371 (430)
78 TIGR03866 PQQ_ABC_repeats PQQ- 90.9 13 0.00029 34.4 18.7 102 167-296 2-106 (300)
79 PF08450 SGL: SMP-30/Gluconola 90.8 13 0.00028 34.0 18.4 114 165-301 11-130 (246)
80 PF05096 Glu_cyclase_2: Glutam 90.8 7.1 0.00015 36.2 12.9 112 158-295 48-159 (264)
81 PRK04922 tolB translocation pr 90.2 22 0.00048 35.8 17.9 145 132-301 229-376 (433)
82 TIGR02800 propeller_TolB tol-p 90.1 21 0.00046 35.4 18.0 146 132-301 215-362 (417)
83 PF13360 PQQ_2: PQQ-like domai 90.0 14 0.00031 33.2 20.6 140 130-300 45-200 (238)
84 KOG2055 WD40 repeat protein [G 89.7 4.6 0.0001 39.8 11.1 134 132-294 281-418 (514)
85 PF05096 Glu_cyclase_2: Glutam 89.4 6.4 0.00014 36.5 11.4 101 212-337 50-150 (264)
86 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.0 12 0.00026 38.8 14.6 118 164-300 68-198 (527)
87 PRK03629 tolB translocation pr 88.8 28 0.00061 35.0 20.0 145 132-301 224-371 (429)
88 KOG2055 WD40 repeat protein [G 88.3 12 0.00027 36.9 12.9 108 164-296 267-377 (514)
89 TIGR03300 assembly_YfgL outer 88.2 28 0.0006 34.2 19.2 132 132-296 201-341 (377)
90 KOG0310 Conserved WD40 repeat- 87.4 17 0.00037 36.1 13.4 138 163-338 163-302 (487)
91 PRK11028 6-phosphogluconolacto 87.4 28 0.00061 33.4 23.3 138 132-295 13-158 (330)
92 TIGR02800 propeller_TolB tol-p 86.5 36 0.00078 33.8 16.2 104 183-301 214-318 (417)
93 PF08268 FBA_3: F-box associat 85.7 17 0.00036 29.6 11.1 83 215-302 4-89 (129)
94 PF13088 BNR_2: BNR repeat-lik 85.0 32 0.0007 31.8 14.4 222 139-383 28-275 (275)
95 PRK05137 tolB translocation pr 84.8 46 0.001 33.5 17.5 146 132-301 227-374 (435)
96 smart00284 OLF Olfactomedin-li 83.9 36 0.00078 31.5 16.1 69 218-298 35-107 (255)
97 PRK04792 tolB translocation pr 83.6 53 0.0012 33.2 20.2 105 182-301 241-346 (448)
98 PRK04043 tolB translocation pr 82.6 57 0.0012 32.8 18.2 151 132-302 214-366 (419)
99 PF12217 End_beta_propel: Cata 81.2 33 0.00072 31.6 11.4 169 162-337 142-335 (367)
100 PF02191 OLF: Olfactomedin-lik 80.7 48 0.001 30.7 15.6 145 164-333 77-237 (250)
101 PLN03215 ascorbic acid mannose 80.6 61 0.0013 31.9 15.5 135 140-301 189-354 (373)
102 PF02191 OLF: Olfactomedin-lik 80.2 50 0.0011 30.6 14.9 67 218-298 31-102 (250)
103 PF08268 FBA_3: F-box associat 79.0 25 0.00055 28.5 9.7 80 164-249 4-87 (129)
104 cd00094 HX Hemopexin-like repe 78.9 45 0.00098 29.3 13.8 108 158-296 54-178 (194)
105 smart00284 OLF Olfactomedin-li 78.0 58 0.0013 30.1 15.5 147 161-332 79-241 (255)
106 KOG0274 Cdc4 and related F-box 76.5 0.99 2.2E-05 46.6 0.6 45 14-58 105-149 (537)
107 cd00216 PQQ_DH Dehydrogenases 74.9 81 0.0017 32.4 14.1 121 163-299 59-191 (488)
108 PRK02889 tolB translocation pr 74.8 97 0.0021 31.1 19.1 146 132-301 221-368 (427)
109 TIGR03866 PQQ_ABC_repeats PQQ- 74.7 70 0.0015 29.4 23.9 136 132-297 54-191 (300)
110 PF10282 Lactonase: Lactonase, 74.5 87 0.0019 30.4 14.5 124 158-302 196-333 (345)
111 cd00094 HX Hemopexin-like repe 74.4 61 0.0013 28.5 16.5 135 164-336 15-168 (194)
112 PRK04043 tolB translocation pr 72.6 59 0.0013 32.7 12.1 104 183-301 213-317 (419)
113 PLN00033 photosystem II stabil 71.9 1.1E+02 0.0024 30.5 20.8 69 164-249 145-214 (398)
114 KOG2321 WD40 repeat protein [G 71.8 47 0.001 34.1 10.7 120 152-296 131-261 (703)
115 KOG0316 Conserved WD40 repeat- 69.0 93 0.002 28.4 12.6 108 164-297 69-177 (307)
116 PF10282 Lactonase: Lactonase, 68.3 1.2E+02 0.0026 29.4 20.8 203 130-357 14-240 (345)
117 PRK00178 tolB translocation pr 68.1 1.3E+02 0.0029 29.9 20.5 104 183-301 223-327 (430)
118 PLN00181 protein SPA1-RELATED; 67.2 2E+02 0.0043 31.6 17.6 102 165-295 587-692 (793)
119 PF02897 Peptidase_S9_N: Proly 67.0 1.4E+02 0.003 29.7 14.6 148 131-301 252-412 (414)
120 cd00216 PQQ_DH Dehydrogenases 66.9 1.6E+02 0.0034 30.2 18.2 99 184-299 312-432 (488)
121 TIGR03075 PQQ_enz_alc_DH PQQ-d 65.9 82 0.0018 32.7 11.8 71 213-300 66-147 (527)
122 PF13013 F-box-like_2: F-box-l 63.0 5.4 0.00012 31.6 2.0 29 17-45 22-50 (109)
123 PTZ00421 coronin; Provisional 62.6 1.9E+02 0.0042 29.7 20.8 62 219-296 139-201 (493)
124 PRK01742 tolB translocation pr 60.6 1.9E+02 0.0041 29.0 17.9 139 132-301 229-369 (429)
125 KOG0318 WD40 repeat stress pro 60.0 61 0.0013 32.9 8.9 112 158-294 447-561 (603)
126 PRK04922 tolB translocation pr 56.3 2.2E+02 0.0048 28.5 19.8 104 182-301 227-332 (433)
127 PRK05137 tolB translocation pr 55.8 2.3E+02 0.0049 28.5 23.7 104 183-301 226-330 (435)
128 PTZ00420 coronin; Provisional 55.4 2.7E+02 0.0059 29.2 14.5 105 167-294 139-249 (568)
129 PLN02919 haloacid dehalogenase 54.8 3.1E+02 0.0066 31.4 14.6 72 211-296 808-891 (1057)
130 COG5184 ATS1 Alpha-tubulin sup 53.2 2.6E+02 0.0056 28.3 12.6 37 187-225 90-130 (476)
131 TIGR02658 TTQ_MADH_Hv methylam 53.0 2.3E+02 0.005 27.7 14.7 120 166-299 13-142 (352)
132 KOG0289 mRNA splicing factor [ 52.4 2.5E+02 0.0055 28.0 12.6 118 209-351 350-472 (506)
133 PF03178 CPSF_A: CPSF A subuni 51.9 2.2E+02 0.0048 27.1 14.2 73 234-322 62-140 (321)
134 PF13570 PQQ_3: PQQ-like domai 50.8 29 0.00063 21.5 3.5 26 260-294 15-40 (40)
135 KOG0289 mRNA splicing factor [ 50.5 2.7E+02 0.0059 27.8 16.8 119 158-302 351-471 (506)
136 PTZ00421 coronin; Provisional 47.0 3.4E+02 0.0074 27.9 18.6 116 163-300 177-297 (493)
137 PLN00181 protein SPA1-RELATED; 46.9 4.3E+02 0.0093 29.0 14.7 60 218-295 588-650 (793)
138 TIGR03074 PQQ_membr_DH membran 46.7 4.3E+02 0.0093 29.0 14.0 39 261-300 311-353 (764)
139 PF06433 Me-amine-dh_H: Methyl 45.7 58 0.0012 31.5 6.1 70 218-298 250-325 (342)
140 KOG0266 WD40 repeat-containing 44.7 3.5E+02 0.0076 27.4 18.7 94 184-297 226-322 (456)
141 KOG4341 F-box protein containi 44.6 13 0.00027 36.7 1.6 40 15-54 70-109 (483)
142 cd00200 WD40 WD40 domain, foun 44.4 2.2E+02 0.0049 25.0 17.6 92 184-295 158-251 (289)
143 PF13088 BNR_2: BNR repeat-lik 44.2 1.5E+02 0.0031 27.4 8.8 130 135-271 138-275 (275)
144 cd00200 WD40 WD40 domain, foun 43.4 2.3E+02 0.005 24.9 21.5 106 165-297 104-211 (289)
145 PLN02919 haloacid dehalogenase 42.7 5.7E+02 0.012 29.3 19.3 115 165-302 694-842 (1057)
146 PTZ00420 coronin; Provisional 42.2 4.3E+02 0.0094 27.8 17.2 119 160-301 173-301 (568)
147 PRK11028 6-phosphogluconolacto 41.4 3.2E+02 0.0069 26.0 23.8 143 132-300 58-214 (330)
148 PF12217 End_beta_propel: Cata 40.8 3E+02 0.0066 25.6 17.7 158 164-337 83-260 (367)
149 KOG4378 Nuclear protein COP1 [ 39.9 2.7E+02 0.0058 28.4 9.7 69 209-294 213-281 (673)
150 KOG1332 Vesicle coat complex C 39.7 2.2E+02 0.0047 26.3 8.4 51 241-301 242-295 (299)
151 KOG0299 U3 snoRNP-associated p 38.7 4.2E+02 0.0092 26.6 12.2 150 157-349 205-357 (479)
152 PRK02889 tolB translocation pr 38.4 4.2E+02 0.0091 26.5 20.2 103 183-301 220-324 (427)
153 KOG0266 WD40 repeat-containing 37.8 4.5E+02 0.0097 26.6 17.2 113 158-295 250-366 (456)
154 KOG0291 WD40-repeat-containing 34.7 6.2E+02 0.013 27.4 12.5 59 132-200 415-473 (893)
155 PF06433 Me-amine-dh_H: Methyl 33.7 1.1E+02 0.0024 29.6 6.1 74 164-247 248-325 (342)
156 COG1520 FOG: WD40-like repeat 33.5 4.6E+02 0.01 25.5 16.4 140 132-299 79-225 (370)
157 KOG3669 Uncharacterized conser 33.2 5.9E+02 0.013 26.6 12.3 172 217-445 201-385 (705)
158 KOG2502 Tub family proteins [G 31.4 26 0.00056 33.6 1.4 39 15-53 43-89 (355)
159 KOG0272 U4/U6 small nuclear ri 31.0 5.5E+02 0.012 25.6 12.4 117 157-302 306-425 (459)
160 COG4946 Uncharacterized protei 28.6 6.4E+02 0.014 25.7 10.8 98 182-302 205-304 (668)
161 PF13540 RCC1_2: Regulator of 28.4 95 0.0021 17.9 3.0 18 208-225 8-25 (30)
162 KOG2321 WD40 repeat protein [G 28.4 3.3E+02 0.0072 28.3 8.5 98 131-245 155-261 (703)
163 PRK01029 tolB translocation pr 28.1 6.2E+02 0.014 25.4 14.7 60 234-301 351-411 (428)
164 PF15525 DUF4652: Domain of un 28.0 4.2E+02 0.0091 23.3 12.3 89 179-269 84-175 (200)
165 KOG4328 WD40 protein [Function 27.6 6.2E+02 0.013 25.6 9.9 10 164-173 389-398 (498)
166 KOG0281 Beta-TrCP (transducin 27.6 3.4E+02 0.0074 26.3 7.9 80 184-277 341-420 (499)
167 KOG0646 WD40 repeat protein [G 27.0 6.7E+02 0.014 25.3 13.9 63 156-228 83-145 (476)
168 PRK10115 protease 2; Provision 26.9 8.3E+02 0.018 26.4 16.3 120 164-302 278-403 (686)
169 PF08950 DUF1861: Protein of u 26.8 2.8E+02 0.0061 26.0 7.1 59 214-275 34-95 (298)
170 COG3823 Glutamine cyclotransfe 25.4 5.1E+02 0.011 23.4 8.5 99 212-335 51-149 (262)
171 COG4257 Vgb Streptogramin lyas 25.0 5.9E+02 0.013 24.1 19.7 229 132-436 84-320 (353)
172 PRK03629 tolB translocation pr 24.8 7.1E+02 0.015 24.9 20.5 103 183-301 223-327 (429)
173 COG4257 Vgb Streptogramin lyas 24.7 6E+02 0.013 24.0 16.8 182 132-348 125-312 (353)
174 TIGR03074 PQQ_membr_DH membran 23.6 1E+03 0.022 26.2 14.2 32 213-252 191-224 (764)
175 PF09372 PRANC: PRANC domain; 23.6 45 0.00099 25.6 1.3 25 15-39 70-94 (97)
176 KOG0282 mRNA splicing factor [ 23.2 3.5E+02 0.0076 27.3 7.4 104 165-296 226-333 (503)
177 smart00564 PQQ beta-propeller 23.0 1.6E+02 0.0035 16.8 4.3 26 264-298 4-31 (33)
178 KOG1445 Tumor-specific antigen 22.2 3.3E+02 0.0072 28.7 7.2 57 183-244 742-800 (1012)
179 PF05262 Borrelia_P83: Borreli 21.5 6.5E+02 0.014 25.9 9.2 61 231-297 372-432 (489)
180 KOG0308 Conserved WD40 repeat- 21.1 4.2E+02 0.0092 28.0 7.7 73 158-245 121-204 (735)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.4e-41 Score=344.34 Aligned_cols=255 Identities=25% Similarity=0.450 Sum_probs=219.8
Q ss_pred ceeEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccc
Q 013264 130 QYGLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSF 209 (446)
Q Consensus 130 ~~~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~ 209 (446)
...+.+|||.++.|..+++|+ .+|..+++++ ++|+||++||.+. ....++++++||| .+++|..+|+|+.+|..
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~--~~r~~~~~~~-~~~~lYv~GG~~~-~~~~l~~ve~YD~--~~~~W~~~a~M~~~R~~ 373 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMP--SPRCRVGVAV-LNGKLYVVGGYDS-GSDRLSSVERYDP--RTNQWTPVAPMNTKRSD 373 (571)
T ss_pred cceeEEecCCcCcEeecCCCC--cccccccEEE-ECCEEEEEccccC-CCcccceEEEecC--CCCceeccCCccCcccc
Confidence 456899999999999999999 5777666665 8999999999984 2236899999999 89999999999999999
Q ss_pred eEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEE
Q 013264 210 FACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAEC 289 (446)
Q Consensus 210 ~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~ 289 (446)
+++++++ |+||++||.++.. .++++|+|||.+++|+.+++|+.+|++ +++++.+++||++||.++.. ..++++++
T Consensus 374 ~~v~~l~-g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~m~~~r~~-~gv~~~~g~iYi~GG~~~~~--~~l~sve~ 448 (571)
T KOG4441|consen 374 FGVAVLD-GKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAPMLTRRSG-HGVAVLGGKLYIIGGGDGSS--NCLNSVEC 448 (571)
T ss_pred ceeEEEC-CEEEEEecccccc-ccccEEEecCCCCcccccCCCCcceee-eEEEEECCEEEEEcCcCCCc--cccceEEE
Confidence 9999999 8999999999664 789999999999999999999998887 89999999999999987653 27899999
Q ss_pred EeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC---------CceeEeceEEeeccCCCCcCCC
Q 013264 290 YDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ---------NGEVVKGKIVSSIVPLPKSVTE 360 (446)
Q Consensus 290 yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~---------~~~~~~W~~~~~~~~~p~~~~~ 360 (446)
|||.+++|+.++ +|+.+|.+++++++++ +||++||+++. ++++++|+.+..+ ..
T Consensus 449 YDP~t~~W~~~~-----~M~~~R~~~g~a~~~~-----~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m-------~~ 511 (571)
T KOG4441|consen 449 YDPETNTWTLIA-----PMNTRRSGFGVAVLNG-----KIYVVGGFDGTSALSSVERYDPETNQWTMVAPM-------TS 511 (571)
T ss_pred EcCCCCceeecC-----CcccccccceEEEECC-----EEEEECCccCCCccceEEEEcCCCCceeEcccC-------cc
Confidence 999999999999 8999999999999998 99999999874 6678889988644 56
Q ss_pred CCCCCeEEEeeccccCCCceEEEEeccCCCCCCCCCccccccccccCCcceEEEEEeccCCCcCeeeecCCCCccccc
Q 013264 361 GSSSPCVSVTTLHNSQQQQKVFVMTGNGGRGCSSSSALSSFICNECEGEGAFIMERDMSNGNIKWDHVHLPVGFSGFP 438 (446)
Q Consensus 361 ~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W~~~~~p~~~~~~~ 438 (446)
+|.++++++++ ++||++||..+.. +++ .++.| ||++++|+....|...++.+
T Consensus 512 ~rs~~g~~~~~-------~~ly~vGG~~~~~-----~l~-------------~ve~y-dp~~d~W~~~~~~~~~~~~~ 563 (571)
T KOG4441|consen 512 PRSAVGVVVLG-------GKLYAVGGFDGNN-----NLN-------------TVECY-DPETDTWTEVTEPESGRGGA 563 (571)
T ss_pred ccccccEEEEC-------CEEEEEecccCcc-----ccc-------------eeEEc-CCCCCceeeCCCccccccCc
Confidence 78888999998 9999999976553 333 35669 99999999765554444433
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-39 Score=331.52 Aligned_cols=244 Identities=14% Similarity=0.302 Sum_probs=204.5
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceE
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFA 211 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~ 211 (446)
.+++|||.+++|..++++| .++..+++++ .+++|||+||.... ....+++++||| .+++|..+++|+.+|..++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp--~~r~~~~~a~-l~~~IYviGG~~~~-~~~~~~v~~Yd~--~~n~W~~~~~m~~~R~~~~ 346 (557)
T PHA02713 273 CILVYNINTMEYSVISTIP--NHIINYASAI-VDNEIIIAGGYNFN-NPSLNKVYKINI--ENKIHVELPPMIKNRCRFS 346 (557)
T ss_pred CEEEEeCCCCeEEECCCCC--ccccceEEEE-ECCEEEEEcCCCCC-CCccceEEEEEC--CCCeEeeCCCCcchhhcee
Confidence 4789999999999999999 5777776665 89999999997532 224789999999 8999999999999999999
Q ss_pred EEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCC-----------
Q 013264 212 CAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQ----------- 280 (446)
Q Consensus 212 ~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~----------- 280 (446)
+++++ ++||++||.++.. .++++|+||+.+++|+.+++||.+|.. +++++++++||++||.++...
T Consensus 347 ~~~~~-g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~~r~~-~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 347 LAVID-DTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPIALSS-YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred EEEEC-CEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCccccc-ccEEEECCEEEEEeCCCccccccccccccccc
Confidence 99999 8999999986543 578999999999999999999999987 788899999999999864210
Q ss_pred ----CcccCcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC----------Ccee-Eec
Q 013264 281 ----GRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ----------NGEV-VKG 345 (446)
Q Consensus 281 ----~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~----------~~~~-~~W 345 (446)
....+.+++|||++++|+.++ +|+.+|..++++++++ +|||+||.++. ++++ ++|
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~-----~m~~~r~~~~~~~~~~-----~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLP-----NFWTGTIRPGVVSHKD-----DIYVVCDIKDEKNVKTCIFRYNTNTYNGW 493 (557)
T ss_pred ccccccccceEEEECCCCCeEeecC-----CCCcccccCcEEEECC-----EEEEEeCCCCCCccceeEEEecCCCCCCe
Confidence 112578999999999999999 7899999999999998 99999997532 5566 577
Q ss_pred eEEeeccCCCCcCCCCCCCCeEEEeeccccCCCceEEEEeccCCCCCCCCCccccccccccCCcceEEEEEeccCCCcCe
Q 013264 346 KIVSSIVPLPKSVTEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGRGCSSSSALSSFICNECEGEGAFIMERDMSNGNIKW 425 (446)
Q Consensus 346 ~~~~~~~~~p~~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W 425 (446)
+.+. +| +.+|..+++++++ ++|||+||.++.. .+|+| |+.+++|
T Consensus 494 ~~~~---~m----~~~r~~~~~~~~~-------~~iyv~Gg~~~~~---------------------~~e~y-d~~~~~W 537 (557)
T PHA02713 494 ELIT---TT----ESRLSALHTILHD-------NTIMMLHCYESYM---------------------LQDTF-NVYTYEW 537 (557)
T ss_pred eEcc---cc----CcccccceeEEEC-------CEEEEEeeeccee---------------------ehhhc-Ccccccc
Confidence 7665 44 4577889999998 9999999985532 24669 9999999
Q ss_pred eeecC
Q 013264 426 DHVHL 430 (446)
Q Consensus 426 ~~~~~ 430 (446)
+.+..
T Consensus 538 ~~~~~ 542 (557)
T PHA02713 538 NHICH 542 (557)
T ss_pred cchhh
Confidence 96543
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5.1e-34 Score=277.91 Aligned_cols=253 Identities=18% Similarity=0.269 Sum_probs=189.0
Q ss_pred CCCcEEecCCCCC--CCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCc-cCcc---ceEE
Q 013264 139 SNGTWERIRPHVG--RIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMS-VARS---FFAC 212 (446)
Q Consensus 139 ~~~~W~~l~~~~~--~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p-~~r~---~~~~ 212 (446)
...+|.++..... +.||..|++++ ++++|||+||.........+++++||+ .+++|.++++++ .+|. .|++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~p~~~~~~~~~ 81 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAV-VGDKLYSFGGELKPNEHIDKDLYVFDF--NTHTWSIAPANGDVPRISCLGVRM 81 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEE-ECCEEEEECCccCCCCceeCcEEEEEC--CCCEEEEcCccCCCCCCccCceEE
Confidence 5577999987321 26888887766 799999999985433334679999999 889999998764 3443 6788
Q ss_pred EEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCC-----CccCCcceEEEEECCEEEEEeCCCCCCC---Cccc
Q 013264 213 AVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEM-----DEERDECQGVCLEGDRFFVVSGYGTESQ---GRFK 284 (446)
Q Consensus 213 ~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~~lyv~GG~~~~~~---~~~~ 284 (446)
++++ ++|||+||..... .++++++||+.+++|+.+++| |.+|.. |++++.+++|||+||...... ....
T Consensus 82 ~~~~-~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 82 VAVG-TKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF-HSMASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EEEC-CEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCcee-eEEEEECCEEEEECCccCCCccCCCccc
Confidence 8888 8999999987554 568999999999999999877 778886 888999999999999863211 1235
Q ss_pred CcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCC------------C-----CceeEeceE
Q 013264 285 PDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQ------------Q-----NGEVVKGKI 347 (446)
Q Consensus 285 ~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~------------~-----~~~~~~W~~ 347 (446)
+++++||+++++|+.++.. ...+.+|.+++++++++ +|||+||... . ++++++|+.
T Consensus 159 ~~v~~yd~~~~~W~~l~~~--~~~~~~r~~~~~~~~~~-----~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 159 RTIEAYNIADGKWVQLPDP--GENFEKRGGAGFAVVQG-----KIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTE 231 (341)
T ss_pred ceEEEEECCCCeEeeCCCC--CCCCCCCCcceEEEECC-----eEEEEeccccccccCCccceecCceEEEEcCCCcEEe
Confidence 6899999999999998842 12347899999998888 9999998631 1 446677888
Q ss_pred EeeccCCCCcCCCCCCCCeEEEeeccccCCCceEEEEeccCCCC---CCCCCccccccccccCCcceEEEEEeccCCCcC
Q 013264 348 VSSIVPLPKSVTEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGRG---CSSSSALSSFICNECEGEGAFIMERDMSNGNIK 424 (446)
Q Consensus 348 ~~~~~~~p~~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~ 424 (446)
++..+.+ +.+|..+++++++ ++||||||..... +... ....+ .+++| |+++++
T Consensus 232 ~~~~g~~----P~~r~~~~~~~~~-------~~iyv~GG~~~~~~~~~~~~---------~~~~n---~v~~~-d~~~~~ 287 (341)
T PLN02153 232 VETTGAK----PSARSVFAHAVVG-------KYIIIFGGEVWPDLKGHLGP---------GTLSN---EGYAL-DTETLV 287 (341)
T ss_pred ccccCCC----CCCcceeeeEEEC-------CEEEEECcccCCcccccccc---------ccccc---cEEEE-EcCccE
Confidence 7654333 3467788888888 9999999974321 1000 11112 34557 999999
Q ss_pred eeee
Q 013264 425 WDHV 428 (446)
Q Consensus 425 W~~~ 428 (446)
|+.+
T Consensus 288 W~~~ 291 (341)
T PLN02153 288 WEKL 291 (341)
T ss_pred EEec
Confidence 9955
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.4e-34 Score=297.14 Aligned_cols=253 Identities=17% Similarity=0.215 Sum_probs=204.2
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceE
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFA 211 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~ 211 (446)
....|++..++|..++..+ .+.++++++ .++.||++||..... ...++++.||+ .+++|..+++|+.+|..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~lyv~GG~~~~~-~~~~~v~~yd~--~~~~W~~~~~~~~~R~~~~ 337 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIH---YVYCFGSVV-LNNVIYFIGGMNKNN-LSVNSVVSYDT--KTKSWNKVPELIYPRKNPG 337 (534)
T ss_pred eeeecchhhhhcccccCcc---ccccceEEE-ECCEEEEECCCcCCC-CeeccEEEEeC--CCCeeeECCCCCcccccce
Confidence 3457889999999987665 233444444 899999999986543 25678999999 8999999999999999999
Q ss_pred EEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEe
Q 013264 212 CAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYD 291 (446)
Q Consensus 212 ~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd 291 (446)
+++++ ++||++||.+... ..+++++||+.+++|+.+++||.+|.. +++++++++||++||..... ...+++++||
T Consensus 338 ~~~~~-~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~~~~iYv~GG~~~~~--~~~~~v~~yd 412 (534)
T PHA03098 338 VTVFN-NRIYVIGGIYNSI-SLNTVESWKPGESKWREEPPLIFPRYN-PCVVNVNNLIYVIGGISKND--ELLKTVECFS 412 (534)
T ss_pred EEEEC-CEEEEEeCCCCCE-ecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEECCEEEEECCcCCCC--cccceEEEEe
Confidence 99998 8999999987433 578999999999999999999999987 78888999999999975432 2467899999
Q ss_pred CCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC------------CceeEeceEEeeccCCCCcCC
Q 013264 292 PKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ------------NGEVVKGKIVSSIVPLPKSVT 359 (446)
Q Consensus 292 ~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~------------~~~~~~W~~~~~~~~~p~~~~ 359 (446)
+.+++|+.++ ++|.+|.++++++.++ +|||+||.... ++++++|+.+. ++|
T Consensus 413 ~~t~~W~~~~-----~~p~~r~~~~~~~~~~-----~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~---- 475 (534)
T PHA03098 413 LNTNKWSKGS-----PLPISHYGGCAIYHDG-----KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS---SLN---- 475 (534)
T ss_pred CCCCeeeecC-----CCCccccCceEEEECC-----EEEEECCccCCCCCcccceEEEecCCCCceeeCC---CCC----
Confidence 9999999998 6889999999988887 99999997542 45667787665 333
Q ss_pred CCCCCCeEEEeeccccCCCceEEEEeccCCCCCCCCCccccccccccCCcceEEEEEeccCCCcCeeeecCCCCcccccc
Q 013264 360 EGSSSPCVSVTTLHNSQQQQKVFVMTGNGGRGCSSSSALSSFICNECEGEGAFIMERDMSNGNIKWDHVHLPVGFSGFPC 439 (446)
Q Consensus 360 ~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W~~~~~p~~~~~~~~ 439 (446)
.+|.++++++++ ++|||+||...... ...+++| |+++++|+.++.++++.+.+.
T Consensus 476 ~~r~~~~~~~~~-------~~iyv~GG~~~~~~------------------~~~v~~y-d~~~~~W~~~~~~p~~~~~~~ 529 (534)
T PHA03098 476 FPRINASLCIFN-------NKIYVVGGDKYEYY------------------INEIEVY-DDKTNTWTLFCKFPKVIGSLE 529 (534)
T ss_pred cccccceEEEEC-------CEEEEEcCCcCCcc------------------cceeEEE-eCCCCEEEecCCCccccccee
Confidence 457778888887 99999999875431 1235669 999999998776666666553
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=295.77 Aligned_cols=223 Identities=25% Similarity=0.453 Sum_probs=192.8
Q ss_pred eCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCC
Q 013264 164 ASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEA 243 (446)
Q Consensus 164 ~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t 243 (446)
..+.||++||... .....+.+..||| .++.|..+++||.+|..+++++++ ++|||+||++.....++++|+||+.+
T Consensus 283 ~~~~l~~vGG~~~-~~~~~~~ve~yd~--~~~~w~~~a~m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 283 VSGKLVAVGGYNR-QGQSLRSVECYDP--KTNEWSSLAPMPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCeEEEECCCCC-CCcccceeEEecC--CcCcEeecCCCCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCC
Confidence 5689999999875 2346889999999 889999999999999999999999 89999999995334789999999999
Q ss_pred CcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEecCC
Q 013264 244 DEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRL 323 (446)
Q Consensus 244 ~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~ 323 (446)
++|+.+++|+.+|.. +++++++|+||++||.++.. ..+++++|||.+++|+.++ +|+.+|.+++++++++
T Consensus 359 ~~W~~~a~M~~~R~~-~~v~~l~g~iYavGG~dg~~---~l~svE~YDp~~~~W~~va-----~m~~~r~~~gv~~~~g- 428 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSD-FGVAVLDGKLYAVGGFDGEK---SLNSVECYDPVTNKWTPVA-----PMLTRRSGHGVAVLGG- 428 (571)
T ss_pred CceeccCCccCcccc-ceeEEECCEEEEEecccccc---ccccEEEecCCCCcccccC-----CCCcceeeeEEEEECC-
Confidence 999999999999998 89999999999999998653 7889999999999999999 7888999999999998
Q ss_pred CcccEEEEEcCCCCC----------CceeEeceEEeeccCCCCcCCCCCCCCeEEEeeccccCCCceEEEEeccCCCCCC
Q 013264 324 QQHQWLWFLGKEQQQ----------NGEVVKGKIVSSIVPLPKSVTEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGRGCS 393 (446)
Q Consensus 324 ~~~~~lyv~GG~~~~----------~~~~~~W~~~~~~~~~p~~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~ 393 (446)
+||++||.++. ++.++.|+.+..+ ..+|.++++++++ ++||++||.++..
T Consensus 429 ----~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M-------~~~R~~~g~a~~~-------~~iYvvGG~~~~~-- 488 (571)
T KOG4441|consen 429 ----KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM-------NTRRSGFGVAVLN-------GKIYVVGGFDGTS-- 488 (571)
T ss_pred ----EEEEEcCcCCCccccceEEEEcCCCCceeecCCc-------ccccccceEEEEC-------CEEEEECCccCCC--
Confidence 99999998776 5677888887754 5788899999998 9999999998732
Q ss_pred CCCccccccccccCCcceEEEEEeccCCCcCeeeec-CCCCcccc
Q 013264 394 SSSALSSFICNECEGEGAFIMERDMSNGNIKWDHVH-LPVGFSGF 437 (446)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W~~~~-~p~~~~~~ 437 (446)
..-.+|+| |+++++|+.+. ++.++...
T Consensus 489 ----------------~~~~VE~y-dp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 489 ----------------ALSSVERY-DPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred ----------------ccceEEEE-cCCCCceeEcccCccccccc
Confidence 12236789 99999999654 55555543
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.9e-33 Score=281.63 Aligned_cols=259 Identities=15% Similarity=0.220 Sum_probs=196.5
Q ss_pred EEEEECCC----CcEEecCCCCC-CCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCC---c
Q 013264 133 LTIFNASN----GTWERIRPHVG-RIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPM---S 204 (446)
Q Consensus 133 ~~~ydp~~----~~W~~l~~~~~-~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~---p 204 (446)
++.++|.+ ++|..++++.. +.||..|++++ +++.|||+||.........+++++||+ .+++|..++++ |
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~-~~~~iyv~GG~~~~~~~~~~~v~~yD~--~~~~W~~~~~~g~~P 215 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQ-VGNKIYSFGGEFTPNQPIDKHLYVFDL--ETRTWSISPATGDVP 215 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccEEEE-ECCEEEEECCcCCCCCCeeCcEEEEEC--CCCEEEeCCCCCCCC
Confidence 44457655 89999987532 36898888876 799999999975433324578999999 89999988653 3
Q ss_pred c-CccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCC---CccCCcceEEEEECCEEEEEeCCCCCCC
Q 013264 205 V-ARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEM---DEERDECQGVCLEGDRFFVVSGYGTESQ 280 (446)
Q Consensus 205 ~-~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~~lyv~GG~~~~~~ 280 (446)
. +|..|++++++ ++|||+||.+... .++++++||+.+++|++++++ |.+|.. |++++.+++|||+||.+...
T Consensus 216 ~~~~~~~~~v~~~-~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~-h~~~~~~~~iYv~GG~~~~~- 291 (470)
T PLN02193 216 HLSCLGVRMVSIG-STLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSF-HSMAADEENVYVFGGVSATA- 291 (470)
T ss_pred CCcccceEEEEEC-CEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccc-eEEEEECCEEEEECCCCCCC-
Confidence 3 35678888888 8999999987543 578999999999999999888 788987 78888999999999986532
Q ss_pred CcccCcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC--------CceeEeceEEeecc
Q 013264 281 GRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ--------NGEVVKGKIVSSIV 352 (446)
Q Consensus 281 ~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~--------~~~~~~W~~~~~~~ 352 (446)
..+++++||+.+++|+.++. +..++.+|..++++++++ +|||+||.++. ++++++|+.+..++
T Consensus 292 --~~~~~~~yd~~t~~W~~~~~--~~~~~~~R~~~~~~~~~g-----kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g 362 (470)
T PLN02193 292 --RLKTLDSYNIVDKKWFHCST--PGDSFSIRGGAGLEVVQG-----KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFG 362 (470)
T ss_pred --CcceEEEEECCCCEEEeCCC--CCCCCCCCCCcEEEEECC-----cEEEEECCCCCccCceEEEECCCCEEEEeccCC
Confidence 56789999999999999874 234678899999998887 99999997653 45677888876543
Q ss_pred CCCCcCCCCCCCCeEEEeeccccCCCceEEEEeccCCCCCCCCCccccccccccCCcceEEEEEeccCCCcCeeee
Q 013264 353 PLPKSVTEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGRGCSSSSALSSFICNECEGEGAFIMERDMSNGNIKWDHV 428 (446)
Q Consensus 353 ~~p~~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W~~~ 428 (446)
.. +.+|..+++++++ ++|||+||......... .. .....++ +++| |+++++|+.+
T Consensus 363 ~~----P~~R~~~~~~~~~-------~~iyv~GG~~~~~~~~~--~~----~~~~~nd---v~~~-D~~t~~W~~~ 417 (470)
T PLN02193 363 VR----PSERSVFASAAVG-------KHIVIFGGEIAMDPLAH--VG----PGQLTDG---TFAL-DTETLQWERL 417 (470)
T ss_pred CC----CCCcceeEEEEEC-------CEEEEECCccCCccccc--cC----ccceecc---EEEE-EcCcCEEEEc
Confidence 33 3567888888888 99999999864220000 00 0011122 3457 9999999954
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=284.64 Aligned_cols=226 Identities=16% Similarity=0.272 Sum_probs=184.2
Q ss_pred EECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEE
Q 013264 136 FNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVV 215 (446)
Q Consensus 136 ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~ 215 (446)
|.+..++|..+. .+++++..++.||++||.+.. ...++++.||| .+++|..+++|+.+|..++++++
T Consensus 251 ~~~~~~~~~~~~---------~~~~~~~~~~~lyviGG~~~~--~~~~~v~~Ydp--~~~~W~~~~~m~~~r~~~~~v~~ 317 (480)
T PHA02790 251 YPMNMDQIIDIF---------HMCTSTHVGEVVYLIGGWMNN--EIHNNAIAVNY--ISNNWIPIPPMNSPRLYASGVPA 317 (480)
T ss_pred cCCcccceeecc---------CCcceEEECCEEEEEcCCCCC--CcCCeEEEEEC--CCCEEEECCCCCchhhcceEEEE
Confidence 345556665432 133333478999999998543 35778999999 88999999999999999999999
Q ss_pred CCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCC
Q 013264 216 GASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTG 295 (446)
Q Consensus 216 ~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~ 295 (446)
+ ++||++||.+.. +++++||+.+++|+.+++|+.+|.. +++++++|+||++||.... .+.+++|||+++
T Consensus 318 ~-~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~~g~IYviGG~~~~-----~~~ve~ydp~~~ 386 (480)
T PHA02790 318 N-NKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLKPRCN-PAVASINNVIYVIGGHSET-----DTTTEYLLPNHD 386 (480)
T ss_pred C-CEEEEECCcCCC----CceEEEECCCCeEEECCCCCCCCcc-cEEEEECCEEEEecCcCCC-----CccEEEEeCCCC
Confidence 8 899999997532 6799999999999999999999987 7889999999999997532 357999999999
Q ss_pred ceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCC-CCceeEeceEEeeccCCCCcCCCCCCCCeEEEeeccc
Q 013264 296 SWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQ-QNGEVVKGKIVSSIVPLPKSVTEGSSSPCVSVTTLHN 374 (446)
Q Consensus 296 ~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~W~~~~~~~~~p~~~~~~R~~~~~~~~~~~~ 374 (446)
+|+.++ +|+.+|..++++++++ +|||+||... .++++++|+.+.. | ..+|.++++++++
T Consensus 387 ~W~~~~-----~m~~~r~~~~~~~~~~-----~IYv~GG~~e~ydp~~~~W~~~~~---m----~~~r~~~~~~v~~--- 446 (480)
T PHA02790 387 QWQFGP-----STYYPHYKSCALVFGR-----RLFLVGRNAEFYCESSNTWTLIDD---P----IYPRDNPELIIVD--- 446 (480)
T ss_pred EEEeCC-----CCCCccccceEEEECC-----EEEEECCceEEecCCCCcEeEcCC---C----CCCccccEEEEEC---
Confidence 999998 7889999999999998 9999999533 2778889997763 3 3577888999998
Q ss_pred cCCCceEEEEeccCCCCCCCCCccccccccccCCcceEEEEEeccCCCcCeeee
Q 013264 375 SQQQQKVFVMTGNGGRGCSSSSALSSFICNECEGEGAFIMERDMSNGNIKWDHV 428 (446)
Q Consensus 375 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W~~~ 428 (446)
++|||+||.+... ....+|+| |+++++|+.-
T Consensus 447 ----~~IYviGG~~~~~------------------~~~~ve~Y-d~~~~~W~~~ 477 (480)
T PHA02790 447 ----NKLLLIGGFYRGS------------------YIDTIEVY-NNRTYSWNIW 477 (480)
T ss_pred ----CEEEEECCcCCCc------------------ccceEEEE-ECCCCeEEec
Confidence 9999999986332 01236779 9999999843
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=9.3e-33 Score=283.52 Aligned_cols=199 Identities=18% Similarity=0.239 Sum_probs=173.3
Q ss_pred eeEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce
Q 013264 131 YGLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210 (446)
Q Consensus 131 ~~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~ 210 (446)
..+++|||.+++|..+++|+ .+|..+++++ ++++||++||.++.. ..+++++||| .+++|..+++||.+|..+
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~--~~R~~~~~~~-~~g~IYviGG~~~~~--~~~sve~Ydp--~~~~W~~~~~mp~~r~~~ 392 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMI--KNRCRFSLAV-IDDTIYAIGGQNGTN--VERTIECYTM--GDDKWKMLPDMPIALSSY 392 (557)
T ss_pred ceEEEEECCCCeEeeCCCCc--chhhceeEEE-ECCEEEEECCcCCCC--CCceEEEEEC--CCCeEEECCCCCcccccc
Confidence 46899999999999999999 6888777665 899999999986542 4778999999 899999999999999999
Q ss_pred EEEEECCcEEEEEeccCCCC-----------------CCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEe
Q 013264 211 ACAVVGASTVCVAGGHDGQK-----------------NALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVS 273 (446)
Q Consensus 211 ~~~~~~d~~iyv~GG~~~~~-----------------~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~G 273 (446)
++++++ ++|||+||.+... ..++++++|||.+++|+.+++|+.+|.. +++++++++|||+|
T Consensus 393 ~~~~~~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~~~~IYv~G 470 (557)
T PHA02713 393 GMCVLD-QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVSHKDDIYVVC 470 (557)
T ss_pred cEEEEC-CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-CcEEEECCEEEEEe
Confidence 999998 8999999976421 1257899999999999999999999987 78999999999999
Q ss_pred CCCCCCCCcccCcEEEEeCCC-CceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC------CceeEece
Q 013264 274 GYGTESQGRFKPDAECYDPKT-GSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ------NGEVVKGK 346 (446)
Q Consensus 274 G~~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~------~~~~~~W~ 346 (446)
|.++.. ...+.+++|||++ ++|+.++ +||.+|..++++++++ +||++||.++. ++++++|+
T Consensus 471 G~~~~~--~~~~~ve~Ydp~~~~~W~~~~-----~m~~~r~~~~~~~~~~-----~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 471 DIKDEK--NVKTCIFRYNTNTYNGWELIT-----TTESRLSALHTILHDN-----TIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred CCCCCC--ccceeEEEecCCCCCCeeEcc-----ccCcccccceeEEECC-----EEEEEeeecceeehhhcCccccccc
Confidence 986432 2345689999999 8999999 7999999999999998 99999998873 78899998
Q ss_pred EEee
Q 013264 347 IVSS 350 (446)
Q Consensus 347 ~~~~ 350 (446)
.+..
T Consensus 539 ~~~~ 542 (557)
T PHA02713 539 HICH 542 (557)
T ss_pred chhh
Confidence 7764
No 9
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.2e-31 Score=261.37 Aligned_cols=237 Identities=21% Similarity=0.382 Sum_probs=178.9
Q ss_pred eeEEEEECCCCcEEecCCCCCCCCcc--ceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCC-----
Q 013264 131 YGLTIFNASNGTWERIRPHVGRIPMF--CQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPM----- 203 (446)
Q Consensus 131 ~~~~~ydp~~~~W~~l~~~~~~~p~~--~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~----- 203 (446)
..+++||+.+++|..++++.. .|+. ..+++++++++||||||..... ..+++++||+ .+++|+.+++|
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~-~p~~~~~~~~~~~~~~~iyv~GG~~~~~--~~~~v~~yd~--~t~~W~~~~~~~~~~~ 124 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGD-VPRISCLGVRMVAVGTKLYIFGGRDEKR--EFSDFYSYDT--VKNEWTFLTKLDEEGG 124 (341)
T ss_pred CcEEEEECCCCEEEEcCccCC-CCCCccCceEEEEECCEEEEECCCCCCC--ccCcEEEEEC--CCCEEEEeccCCCCCC
Confidence 358999999999999988753 2432 2333444899999999986543 4679999999 89999999887
Q ss_pred ccCccceEEEEECCcEEEEEeccCCCC-----CCCCeEEEEECCCCcEEecCCCC---ccCCcceEEEEECCEEEEEeCC
Q 013264 204 SVARSFFACAVVGASTVCVAGGHDGQK-----NALKSAEVYDVEADEWRMLPEMD---EERDECQGVCLEGDRFFVVSGY 275 (446)
Q Consensus 204 p~~r~~~~~~~~~d~~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~~~~~~lyv~GG~ 275 (446)
|.+|..|++++++ ++|||+||..... ..++++++||+.+++|+.++++. .+|.+ +++++++++|||+||.
T Consensus 125 p~~R~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~-~~~~~~~~~iyv~GG~ 202 (341)
T PLN02153 125 PEARTFHSMASDE-NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGG-AGFAVVQGKIWVVYGF 202 (341)
T ss_pred CCCceeeEEEEEC-CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCc-ceEEEECCeEEEEecc
Confidence 8899999999988 8999999986431 13578999999999999998764 66776 7888899999999997
Q ss_pred CCC-----CCCcccCcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCC-------------
Q 013264 276 GTE-----SQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQ------------- 337 (446)
Q Consensus 276 ~~~-----~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~------------- 337 (446)
... ......+++++||+++++|++++.. ..+|.+|..++++++++ +||||||...
T Consensus 203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~--g~~P~~r~~~~~~~~~~-----~iyv~GG~~~~~~~~~~~~~~~~ 275 (341)
T PLN02153 203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETT--GAKPSARSVFAHAVVGK-----YIIIFGGEVWPDLKGHLGPGTLS 275 (341)
T ss_pred ccccccCCccceecCceEEEEcCCCcEEecccc--CCCCCCcceeeeEEECC-----EEEEECcccCCcccccccccccc
Confidence 421 1112357899999999999999742 13678999999999988 9999999731
Q ss_pred -C----CceeEeceEEeec--cCCCCcCCCCCCCCe-EEEeeccccCCCceEEEEeccCCCC
Q 013264 338 -Q----NGEVVKGKIVSSI--VPLPKSVTEGSSSPC-VSVTTLHNSQQQQKVFVMTGNGGRG 391 (446)
Q Consensus 338 -~----~~~~~~W~~~~~~--~~~p~~~~~~R~~~~-~~~~~~~~~~~~~~l~v~GG~~~~~ 391 (446)
. ++++++|+.+... .++|+ +|.+++ +++.+ +++|||+||.....
T Consensus 276 n~v~~~d~~~~~W~~~~~~~~~~~pr----~~~~~~~~~v~~------~~~~~~~gG~~~~~ 327 (341)
T PLN02153 276 NEGYALDTETLVWEKLGECGEPAMPR----GWTAYTTATVYG------KNGLLMHGGKLPTN 327 (341)
T ss_pred ccEEEEEcCccEEEeccCCCCCCCCC----ccccccccccCC------cceEEEEcCcCCCC
Confidence 0 4567788877532 13332 233333 33333 36899999997654
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=4.9e-32 Score=264.77 Aligned_cols=258 Identities=17% Similarity=0.238 Sum_probs=177.9
Q ss_pred cCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCc-cCccceEEEEECCcEEEEEe
Q 013264 146 IRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMS-VARSFFACAVVGASTVCVAG 224 (446)
Q Consensus 146 l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p-~~r~~~~~~~~~d~~iyv~G 224 (446)
+|+|| .++..+++++ ++++|||+||.. .+++++||+...+++|.++++|| .+|..+++++++ ++|||+|
T Consensus 1 ~~~lp--~~~~~~~~~~-~~~~vyv~GG~~------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~-~~iYv~G 70 (346)
T TIGR03547 1 LPDLP--VGFKNGTGAI-IGDKVYVGLGSA------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID-GKLYVFG 70 (346)
T ss_pred CCCCC--ccccCceEEE-ECCEEEEEcccc------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEEC-CEEEEEe
Confidence 35566 5777666544 799999999963 25789999522568999999999 589999999998 8999999
Q ss_pred ccCCCC-----CCCCeEEEEECCCCcEEecC-CCCccCCcceEEE-EECCEEEEEeCCCCCCC-----------------
Q 013264 225 GHDGQK-----NALKSAEVYDVEADEWRMLP-EMDEERDECQGVC-LEGDRFFVVSGYGTESQ----------------- 280 (446)
Q Consensus 225 G~~~~~-----~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~-~~~~~lyv~GG~~~~~~----------------- 280 (446)
|..... ..++++|+||+.+++|+.++ ++|..|.+ ++++ +.+++||++||.+....
T Consensus 71 G~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 149 (346)
T TIGR03547 71 GIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLG-ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPK 149 (346)
T ss_pred CCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccc-eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhh
Confidence 985422 14689999999999999997 45666665 4444 78999999999853200
Q ss_pred --------------CcccCcEEEEeCCCCceEEcccCCCCCCCC-CCCceEEEEecCCCcccEEEEEcCCCCC-------
Q 013264 281 --------------GRFKPDAECYDPKTGSWSKFDHVWPFPSLS-PRGSTATITSYRLQQHQWLWFLGKEQQQ------- 338 (446)
Q Consensus 281 --------------~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~-~r~~~~~~~~~~~~~~~~lyv~GG~~~~------- 338 (446)
....+.+++||+.+++|+.++ +||. +|..++++++++ +|||+||....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~-----~~p~~~r~~~~~~~~~~-----~iyv~GG~~~~~~~~~~~ 219 (346)
T TIGR03547 150 DKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG-----ENPFLGTAGSAIVHKGN-----KLLLINGEIKPGLRTAEV 219 (346)
T ss_pred hhhHHHHhCCChhHcCccceEEEEECCCCceeECc-----cCCCCcCCCceEEEECC-----EEEEEeeeeCCCccchhe
Confidence 001378999999999999998 6775 688888888887 99999997532
Q ss_pred -----CceeEeceEEeeccCCCCcC---CCCCCCCeEEEeeccccCCCceEEEEeccCCCCCCCCCcc-ccccccccCCc
Q 013264 339 -----NGEVVKGKIVSSIVPLPKSV---TEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGRGCSSSSAL-SSFICNECEGE 409 (446)
Q Consensus 339 -----~~~~~~W~~~~~~~~~p~~~---~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~-~~~~~~~~~~~ 409 (446)
+++.++|..+. +||... ...|..+++++++ ++|||+||....+... .+. +.... .....
T Consensus 220 ~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~-------~~Iyv~GG~~~~~~~~-~~~~~~~~~-~~~~~ 287 (346)
T TIGR03547 220 KQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISN-------GVLLVAGGANFPGAQE-NYKNGKLYA-HEGLI 287 (346)
T ss_pred EEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEEC-------CEEEEeecCCCCCchh-hhhcCCccc-cCCCC
Confidence 12344676665 454322 2233455567777 9999999986432100 000 00000 00001
Q ss_pred ceEEEEEeccCCCcCeeee-cCCCCcccc
Q 013264 410 GAFIMERDMSNGNIKWDHV-HLPVGFSGF 437 (446)
Q Consensus 410 ~~~~~~~y~d~~~~~W~~~-~~p~~~~~~ 437 (446)
....+|+| |+++++|+.+ ++|..+..+
T Consensus 288 ~~~~~e~y-d~~~~~W~~~~~lp~~~~~~ 315 (346)
T TIGR03547 288 KAWSSEVY-ALDNGKWSKVGKLPQGLAYG 315 (346)
T ss_pred ceeEeeEE-EecCCcccccCCCCCCceee
Confidence 12356789 9999999943 566555443
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.1e-31 Score=257.75 Aligned_cols=229 Identities=17% Similarity=0.247 Sum_probs=175.9
Q ss_pred eEEEEE-CCCC-cEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcE----EEccCCcc
Q 013264 132 GLTIFN-ASNG-TWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRW----RRVKPMSV 205 (446)
Q Consensus 132 ~~~~yd-p~~~-~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W----~~~~~~p~ 205 (446)
.+++|+ +..+ +|..+++|| .+|..+++++ ++++||++||.++.. ..+++++||+ .+++| ..+++||.
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp--~~r~~~~~~~-~~~~lyviGG~~~~~--~~~~v~~~d~--~~~~w~~~~~~~~~lp~ 112 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLP--YEAAYGASVS-VENGIYYIGGSNSSE--RFSSVYRITL--DESKEELICETIGNLPF 112 (323)
T ss_pred eeEEEecCCCceeEEEcccCC--ccccceEEEE-ECCEEEEEcCCCCCC--CceeEEEEEE--cCCceeeeeeEcCCCCc
Confidence 456664 4333 799999999 5787666655 799999999986533 4789999999 77887 78899999
Q ss_pred CccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCc-cCCcceEEEEECCEEEEEeCCCCCCCCccc
Q 013264 206 ARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDE-ERDECQGVCLEGDRFFVVSGYGTESQGRFK 284 (446)
Q Consensus 206 ~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~ 284 (446)
+|..|++++++ ++|||+||..... .++++++||+.+++|+++++||. +|.. +++++.+++|||+||.+.. ..
T Consensus 113 ~~~~~~~~~~~-~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~~r~~-~~~~~~~~~iYv~GG~~~~----~~ 185 (323)
T TIGR03548 113 TFENGSACYKD-GTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGEPRVQ-PVCVKLQNELYVFGGGSNI----AY 185 (323)
T ss_pred CccCceEEEEC-CEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCCCCCc-ceEEEECCEEEEEcCCCCc----cc
Confidence 99999999998 8999999975433 57899999999999999999885 6765 7778899999999998543 23
Q ss_pred CcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC--------------------------
Q 013264 285 PDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ-------------------------- 338 (446)
Q Consensus 285 ~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~-------------------------- 338 (446)
.++++||+++++|+.++.+...+.|..+..++++++.+ ++|||+||.+..
T Consensus 186 ~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (323)
T TIGR03548 186 TDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINE----SLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFL 261 (323)
T ss_pred cceEEEecCCCeeEECCCCCCCCCceeccceeEEEECC----CEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhC
Confidence 56899999999999998532112344444555555543 499999998631
Q ss_pred ---------------CceeEeceEEeeccCCCCcCCCCCCCCeEEEeeccccCCCceEEEEeccCCCC
Q 013264 339 ---------------NGEVVKGKIVSSIVPLPKSVTEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGRG 391 (446)
Q Consensus 339 ---------------~~~~~~W~~~~~~~~~p~~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~~ 391 (446)
++++++|+.+. ++| ..+|..+++++++ ++|||+||....+
T Consensus 262 ~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p---~~~r~~~~~~~~~-------~~iyv~GG~~~pg 316 (323)
T TIGR03548 262 KPPEWYNWNRKILIYNVRTGKWKSIG---NSP---FFARCGAALLLTG-------NNIFSINGELKPG 316 (323)
T ss_pred CCccccCcCceEEEEECCCCeeeEcc---ccc---ccccCchheEEEC-------CEEEEEeccccCC
Confidence 33556676665 343 2467888899998 9999999987665
No 12
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.1e-30 Score=263.79 Aligned_cols=236 Identities=17% Similarity=0.281 Sum_probs=180.0
Q ss_pred eeEEEEECCCCcEEecCCCCC-CCC-ccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCC---cc
Q 013264 131 YGLTIFNASNGTWERIRPHVG-RIP-MFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPM---SV 205 (446)
Q Consensus 131 ~~~~~ydp~~~~W~~l~~~~~-~~p-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~---p~ 205 (446)
..+++||+.+++|..++.+.. +.+ |..|+++ .++++||||||.+... ..+++++||+ .+++|+++++| |.
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v-~~~~~lYvfGG~~~~~--~~ndv~~yD~--~t~~W~~l~~~~~~P~ 267 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMV-SIGSTLYVFGGRDASR--QYNGFYSFDT--TTNEWKLLTPVEEGPT 267 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEE-EECCEEEEECCCCCCC--CCccEEEEEC--CCCEEEEcCcCCCCCC
Confidence 358999999999998876532 112 2344444 4899999999986542 4789999999 89999999888 88
Q ss_pred CccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCC---CCccCCcceEEEEECCEEEEEeCCCCCCCCc
Q 013264 206 ARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPE---MDEERDECQGVCLEGDRFFVVSGYGTESQGR 282 (446)
Q Consensus 206 ~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~ 282 (446)
+|..|++++++ ++|||+||.+... .++++++||+.+++|+.++. ++.+|.. +++++++++||++||.++.
T Consensus 268 ~R~~h~~~~~~-~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~~~gkiyviGG~~g~---- 340 (470)
T PLN02193 268 PRSFHSMAADE-ENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEVVQGKVWVVYGFNGC---- 340 (470)
T ss_pred CccceEEEEEC-CEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEEECCcEEEEECCCCC----
Confidence 99999999998 8999999987643 57899999999999999864 5677876 7888899999999997643
Q ss_pred ccCcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC------------------CceeEe
Q 013264 283 FKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ------------------NGEVVK 344 (446)
Q Consensus 283 ~~~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~------------------~~~~~~ 344 (446)
..+++++||+.+++|++++.. ...|.+|..|+++++++ +|||+||.... ++++++
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~--g~~P~~R~~~~~~~~~~-----~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETF--GVRPSERSVFASAAVGK-----HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred ccCceEEEECCCCEEEEeccC--CCCCCCcceeEEEEECC-----EEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 368999999999999999742 13578999999999988 99999997531 345667
Q ss_pred ceEEeeccCCCCcCCCCCCCCeEE--EeeccccCCCceEEEEeccCCCC
Q 013264 345 GKIVSSIVPLPKSVTEGSSSPCVS--VTTLHNSQQQQKVFVMTGNGGRG 391 (446)
Q Consensus 345 W~~~~~~~~~p~~~~~~R~~~~~~--~~~~~~~~~~~~l~v~GG~~~~~ 391 (446)
|+.+...+ .....+.+|..++++ .+. +++.|+++||.....
T Consensus 414 W~~~~~~~-~~~~~P~~R~~~~~~~~~~~-----~~~~~~~fGG~~~~~ 456 (470)
T PLN02193 414 WERLDKFG-EEEETPSSRGWTASTTGTID-----GKKGLVMHGGKAPTN 456 (470)
T ss_pred EEEcccCC-CCCCCCCCCccccceeeEEc-----CCceEEEEcCCCCcc
Confidence 87775431 111234556555432 232 124599999997653
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.7e-31 Score=258.59 Aligned_cols=228 Identities=18% Similarity=0.248 Sum_probs=168.6
Q ss_pred eEEEEEC--CCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCC----CCccCeEEEEeCcCCCCcEEEcc-CCc
Q 013264 132 GLTIFNA--SNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPIT----LEPVPDVYVLDMVNNSSRWRRVK-PMS 204 (446)
Q Consensus 132 ~~~~ydp--~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~----~~~~~~v~~~d~~~~t~~W~~~~-~~p 204 (446)
.++.||+ .+++|..+++|+. .+|..+++++ ++++|||+||..... ...++++++||| .+++|++++ ++|
T Consensus 30 ~~~~~d~~~~~~~W~~l~~~p~-~~R~~~~~~~-~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~--~~~~W~~~~~~~p 105 (346)
T TIGR03547 30 SWYKLDLKKPSKGWQKIADFPG-GPRNQAVAAA-IDGKLYVFGGIGKANSEGSPQVFDDVYRYDP--KKNSWQKLDTRSP 105 (346)
T ss_pred eeEEEECCCCCCCceECCCCCC-CCcccceEEE-ECCEEEEEeCCCCCCCCCcceecccEEEEEC--CCCEEecCCCCCC
Confidence 4778885 6789999999983 3676666555 899999999985321 124678999999 899999997 466
Q ss_pred cCccceEEE-EECCcEEEEEeccCCCC---------------------------------CCCCeEEEEECCCCcEEecC
Q 013264 205 VARSFFACA-VVGASTVCVAGGHDGQK---------------------------------NALKSAEVYDVEADEWRMLP 250 (446)
Q Consensus 205 ~~r~~~~~~-~~~d~~iyv~GG~~~~~---------------------------------~~~~~~~~yd~~t~~W~~~~ 250 (446)
.+|..++++ +++ ++|||+||.+... ..++++|+||+.+++|+.++
T Consensus 106 ~~~~~~~~~~~~~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~ 184 (346)
T TIGR03547 106 VGLLGASGFSLHN-GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG 184 (346)
T ss_pred CcccceeEEEEeC-CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc
Confidence 777777666 566 8999999986320 01378999999999999999
Q ss_pred CCCc-cCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEe--CCCCceEEcccCCCCCCCCCC-------CceEEEEe
Q 013264 251 EMDE-ERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYD--PKTGSWSKFDHVWPFPSLSPR-------GSTATITS 320 (446)
Q Consensus 251 ~~~~-~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd--~~~~~W~~~~~~~p~~~~~~r-------~~~~~~~~ 320 (446)
+||. +|.. +++++++++|||+||..... .....++.|| +++++|++++ +|+.+| ..+.++++
T Consensus 185 ~~p~~~r~~-~~~~~~~~~iyv~GG~~~~~--~~~~~~~~y~~~~~~~~W~~~~-----~m~~~r~~~~~~~~~~~a~~~ 256 (346)
T TIGR03547 185 ENPFLGTAG-SAIVHKGNKLLLINGEIKPG--LRTAEVKQYLFTGGKLEWNKLP-----PLPPPKSSSQEGLAGAFAGIS 256 (346)
T ss_pred cCCCCcCCC-ceEEEECCEEEEEeeeeCCC--ccchheEEEEecCCCceeeecC-----CCCCCCCCccccccEEeeeEE
Confidence 9996 5665 78889999999999975332 1234566565 5778999998 555554 34556777
Q ss_pred cCCCcccEEEEEcCCCCC--------------------------CceeEeceEEeeccCCCCcCCCCCCCCeEEEeeccc
Q 013264 321 YRLQQHQWLWFLGKEQQQ--------------------------NGEVVKGKIVSSIVPLPKSVTEGSSSPCVSVTTLHN 374 (446)
Q Consensus 321 ~~~~~~~~lyv~GG~~~~--------------------------~~~~~~W~~~~~~~~~p~~~~~~R~~~~~~~~~~~~ 374 (446)
++ +|||+||.+.. ++++++|+.+. +|| .+|..+++++++
T Consensus 257 ~~-----~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp----~~~~~~~~~~~~--- 321 (346)
T TIGR03547 257 NG-----VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG---KLP----QGLAYGVSVSWN--- 321 (346)
T ss_pred CC-----EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC---CCC----CCceeeEEEEcC---
Confidence 77 99999997521 23445566554 554 356667777777
Q ss_pred cCCCceEEEEeccCCCC
Q 013264 375 SQQQQKVFVMTGNGGRG 391 (446)
Q Consensus 375 ~~~~~~l~v~GG~~~~~ 391 (446)
++|||+||....+
T Consensus 322 ----~~iyv~GG~~~~~ 334 (346)
T TIGR03547 322 ----NGVLLIGGENSGG 334 (346)
T ss_pred ----CEEEEEeccCCCC
Confidence 9999999987654
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=2e-30 Score=255.57 Aligned_cols=262 Identities=17% Similarity=0.253 Sum_probs=178.3
Q ss_pred cEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCc-cCccceEEEEECCcEE
Q 013264 142 TWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMS-VARSFFACAVVGASTV 220 (446)
Q Consensus 142 ~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p-~~r~~~~~~~~~d~~i 220 (446)
.+..+++|| .|+..+++++ ++++|||+||... +.+++||+...+++|.++++|| .+|..+++++++ ++|
T Consensus 18 ~~~~l~~lP--~~~~~~~~~~-~~~~iyv~gG~~~------~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~-~~I 87 (376)
T PRK14131 18 NAEQLPDLP--VPFKNGTGAI-DNNTVYVGLGSAG------TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFID-GKL 87 (376)
T ss_pred ecccCCCCC--cCccCCeEEE-ECCEEEEEeCCCC------CeEEEEECCCCCCCeEECCcCCCCCcccceEEEEC-CEE
Confidence 356788888 5777665554 7999999999632 3588999822257899999998 589999999998 899
Q ss_pred EEEeccCC-C----CCCCCeEEEEECCCCcEEecCC-CCccCCcceEEEE-ECCEEEEEeCCCCCC--------------
Q 013264 221 CVAGGHDG-Q----KNALKSAEVYDVEADEWRMLPE-MDEERDECQGVCL-EGDRFFVVSGYGTES-------------- 279 (446)
Q Consensus 221 yv~GG~~~-~----~~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~~-~~~~lyv~GG~~~~~-------------- 279 (446)
||+||... . ...++++++||+.+++|+.+++ +|.++.+ +++++ .+++||++||.....
T Consensus 88 YV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~-~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~ 166 (376)
T PRK14131 88 YVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAG-HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKD 166 (376)
T ss_pred EEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccc-eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccc
Confidence 99999864 1 1236899999999999999985 4566665 55554 899999999975310
Q ss_pred -----------------CCcccCcEEEEeCCCCceEEcccCCCCCCCC-CCCceEEEEecCCCcccEEEEEcCCCCC---
Q 013264 280 -----------------QGRFKPDAECYDPKTGSWSKFDHVWPFPSLS-PRGSTATITSYRLQQHQWLWFLGKEQQQ--- 338 (446)
Q Consensus 280 -----------------~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~-~r~~~~~~~~~~~~~~~~lyv~GG~~~~--- 338 (446)
.....+.+++||+.+++|+.++ ++|. +|..++++.+++ +|||+||....
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~-----~~p~~~~~~~a~v~~~~-----~iYv~GG~~~~~~~ 236 (376)
T PRK14131 167 KTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG-----ESPFLGTAGSAVVIKGN-----KLWLINGEIKPGLR 236 (376)
T ss_pred hhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC-----cCCCCCCCcceEEEECC-----EEEEEeeeECCCcC
Confidence 0012468999999999999988 5665 677888888887 99999996432
Q ss_pred ---------CceeEeceEEeeccCCCCcC--CCCC--CCCeEEEeeccccCCCceEEEEeccCCCCCCCCCccc-ccccc
Q 013264 339 ---------NGEVVKGKIVSSIVPLPKSV--TEGS--SSPCVSVTTLHNSQQQQKVFVMTGNGGRGCSSSSALS-SFICN 404 (446)
Q Consensus 339 ---------~~~~~~W~~~~~~~~~p~~~--~~~R--~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~-~~~~~ 404 (446)
+++.++|..+. +||... ..++ .++.+++++ ++|||+||........ +..+ .+ ..
T Consensus 237 ~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~-------~~iyv~GG~~~~~~~~-~~~~~~~-~~ 304 (376)
T PRK14131 237 TDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSN-------GVLLVAGGANFPGARE-NYQNGKL-YA 304 (376)
T ss_pred ChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeEC-------CEEEEeeccCCCCChh-hhhcCCc-cc
Confidence 23446777665 444322 2122 223345566 8999999986432100 0000 00 00
Q ss_pred ccCCcceEEEEEeccCCCcCeeee-cCCCCcccc
Q 013264 405 ECEGEGAFIMERDMSNGNIKWDHV-HLPVGFSGF 437 (446)
Q Consensus 405 ~~~~~~~~~~~~y~d~~~~~W~~~-~~p~~~~~~ 437 (446)
.......+.+|+| |+++++|+.+ ++|..+..+
T Consensus 305 ~~~~~~~~~~e~y-d~~~~~W~~~~~lp~~r~~~ 337 (376)
T PRK14131 305 HEGLKKSWSDEIY-ALVNGKWQKVGELPQGLAYG 337 (376)
T ss_pred ccCCcceeehheE-EecCCcccccCcCCCCccce
Confidence 0001223557789 9999999944 466555443
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=3.4e-30 Score=249.21 Aligned_cols=208 Identities=10% Similarity=0.164 Sum_probs=156.7
Q ss_pred ccceEEEEeeCCEEEEEeCcCCCC--------CCccCeEEEEe-CcCCCCcEEEccCCccCccceEEEEECCcEEEEEec
Q 013264 155 MFCQCVAVPASRKLLLIGGWDPIT--------LEPVPDVYVLD-MVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGG 225 (446)
Q Consensus 155 ~~~~~~~~~~~~~lyv~GG~~~~~--------~~~~~~v~~~d-~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG 225 (446)
+..+.+++ +++.|||+||.+... ....+++++|+ +. .+.+|..+++||.+|..+++++++ ++||++||
T Consensus 4 ~~g~~~~~-~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~-~~~~W~~~~~lp~~r~~~~~~~~~-~~lyviGG 80 (323)
T TIGR03548 4 VAGCYAGI-IGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDEN-SNLKWVKDGQLPYEAAYGASVSVE-NGIYYIGG 80 (323)
T ss_pred eeeEeeeE-ECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCC-CceeEEEcccCCccccceEEEEEC-CEEEEEcC
Confidence 33444554 799999999985432 12356788885 41 133799999999999988888888 89999999
Q ss_pred cCCCCCCCCeEEEEECCCCcE----EecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 226 HDGQKNALKSAEVYDVEADEW----RMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 226 ~~~~~~~~~~~~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
.+... .++++++||+.+++| +.+++||.+|.. +++++++++|||+||.... ...+++++||+.+++|++++
T Consensus 81 ~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~~~~~~~~iYv~GG~~~~---~~~~~v~~yd~~~~~W~~~~ 155 (323)
T TIGR03548 81 SNSSE-RFSSVYRITLDESKEELICETIGNLPFTFEN-GSACYKDGTLYVGGGNRNG---KPSNKSYLFNLETQEWFELP 155 (323)
T ss_pred CCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCccC-ceEEEECCEEEEEeCcCCC---ccCceEEEEcCCCCCeeECC
Confidence 87544 578999999999998 788999999986 7888999999999997432 24689999999999999998
Q ss_pred cCCCCCCC-CCCCceEEEEecCCCcccEEEEEcCCCCC--------CceeEeceEEeeccCCCCc-CCCCCCCCeEEEee
Q 013264 302 HVWPFPSL-SPRGSTATITSYRLQQHQWLWFLGKEQQQ--------NGEVVKGKIVSSIVPLPKS-VTEGSSSPCVSVTT 371 (446)
Q Consensus 302 ~~~p~~~~-~~r~~~~~~~~~~~~~~~~lyv~GG~~~~--------~~~~~~W~~~~~~~~~p~~-~~~~R~~~~~~~~~ 371 (446)
++| .+|..++++++++ +|||+||.++. ++++++|+.+..+ +.. .+..+..++.+++.
T Consensus 156 -----~~p~~~r~~~~~~~~~~-----~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~---~~~~~p~~~~~~~~~~~~ 222 (323)
T TIGR03548 156 -----DFPGEPRVQPVCVKLQN-----ELYVFGGGSNIAYTDGYKYSPKKNQWQKVADP---TTDSEPISLLGAASIKIN 222 (323)
T ss_pred -----CCCCCCCCcceEEEECC-----EEEEEcCCCCccccceEEEecCCCeeEECCCC---CCCCCceeccceeEEEEC
Confidence 455 4788888888887 99999998643 4566778776543 211 12222233333333
Q ss_pred ccccCCCceEEEEeccCC
Q 013264 372 LHNSQQQQKVFVMTGNGG 389 (446)
Q Consensus 372 ~~~~~~~~~l~v~GG~~~ 389 (446)
+++|||+||.+.
T Consensus 223 ------~~~iyv~GG~~~ 234 (323)
T TIGR03548 223 ------ESLLLCIGGFNK 234 (323)
T ss_pred ------CCEEEEECCcCH
Confidence 389999999864
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=7.6e-31 Score=265.69 Aligned_cols=183 Identities=21% Similarity=0.299 Sum_probs=161.0
Q ss_pred eeEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce
Q 013264 131 YGLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210 (446)
Q Consensus 131 ~~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~ 210 (446)
..++.|||.+++|..+++|+ .+|..+++++ .+++||++||.+. .+++++||| .+++|..+++||.+|..+
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~--~~r~~~~~v~-~~~~iYviGG~~~-----~~sve~ydp--~~n~W~~~~~l~~~r~~~ 356 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMN--SPRLYASGVP-ANNKLYVVGGLPN-----PTSVERWFH--GDAAWVNMPSLLKPRCNP 356 (480)
T ss_pred CeEEEEECCCCEEEECCCCC--chhhcceEEE-ECCEEEEECCcCC-----CCceEEEEC--CCCeEEECCCCCCCCccc
Confidence 46889999999999999999 5887777665 8999999999753 256899999 899999999999999999
Q ss_pred EEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEE
Q 013264 211 ACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECY 290 (446)
Q Consensus 211 ~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~y 290 (446)
++++++ ++|||+||.... .+.+++|||.+++|+.+++|+.+|.. +++++++++|||+||. +++|
T Consensus 357 ~~~~~~-g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~~~~~IYv~GG~-----------~e~y 420 (480)
T PHA02790 357 AVASIN-NVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYK-SCALVFGRRLFLVGRN-----------AEFY 420 (480)
T ss_pred EEEEEC-CEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCcccc-ceEEEECCEEEEECCc-----------eEEe
Confidence 999998 899999998643 36899999999999999999999997 7888999999999982 6899
Q ss_pred eCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC---------CceeEeceEEe
Q 013264 291 DPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ---------NGEVVKGKIVS 349 (446)
Q Consensus 291 d~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~---------~~~~~~W~~~~ 349 (446)
|+++++|+.++ +|+.+|..++++++++ +|||+||.++. ++++++|+.|.
T Consensus 421 dp~~~~W~~~~-----~m~~~r~~~~~~v~~~-----~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 421 CESSNTWTLID-----DPIYPRDNPELIIVDN-----KLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred cCCCCcEeEcC-----CCCCCccccEEEEECC-----EEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 99999999998 7889999999999998 99999997633 55677787664
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=2.9e-30 Score=254.36 Aligned_cols=228 Identities=17% Similarity=0.237 Sum_probs=167.1
Q ss_pred eEEEEECC--CCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCC-C---CCccCeEEEEeCcCCCCcEEEccC-Cc
Q 013264 132 GLTIFNAS--NGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPI-T---LEPVPDVYVLDMVNNSSRWRRVKP-MS 204 (446)
Q Consensus 132 ~~~~ydp~--~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~-~---~~~~~~v~~~d~~~~t~~W~~~~~-~p 204 (446)
.++.||+. +++|..+++++. .+|..+++++ .+++|||+||.... . ....+++++||+ .+++|+++++ +|
T Consensus 51 ~~~~~d~~~~~~~W~~l~~~p~-~~r~~~~~v~-~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~--~~n~W~~~~~~~p 126 (376)
T PRK14131 51 SWYKLDLNAPSKGWTKIAAFPG-GPREQAVAAF-IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDP--KTNSWQKLDTRSP 126 (376)
T ss_pred eEEEEECCCCCCCeEECCcCCC-CCcccceEEE-ECCEEEEEcCCCCCCCCCceeEcccEEEEeC--CCCEEEeCCCCCC
Confidence 36788886 478999999874 3676665554 89999999998541 1 124688999999 8999999986 46
Q ss_pred cCccceEEEE-ECCcEEEEEeccCCCC---------------------------------CCCCeEEEEECCCCcEEecC
Q 013264 205 VARSFFACAV-VGASTVCVAGGHDGQK---------------------------------NALKSAEVYDVEADEWRMLP 250 (446)
Q Consensus 205 ~~r~~~~~~~-~~d~~iyv~GG~~~~~---------------------------------~~~~~~~~yd~~t~~W~~~~ 250 (446)
.++..|++++ .+ ++|||+||..... ...+++++||+.+++|+.++
T Consensus 127 ~~~~~~~~~~~~~-~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~ 205 (376)
T PRK14131 127 VGLAGHVAVSLHN-GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG 205 (376)
T ss_pred CcccceEEEEeeC-CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC
Confidence 7777777776 56 8999999975310 01478999999999999999
Q ss_pred CCCc-cCCcceEEEEECCEEEEEeCCCCCCCCcccCcEE--EEeCCCCceEEcccCCCCCCCCCCC--------ceEEEE
Q 013264 251 EMDE-ERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAE--CYDPKTGSWSKFDHVWPFPSLSPRG--------STATIT 319 (446)
Q Consensus 251 ~~~~-~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~--~yd~~~~~W~~~~~~~p~~~~~~r~--------~~~~~~ 319 (446)
++|. +|.. +++++++++|||+||..... .....++ .||+++++|++++ +||.+|. .+.+++
T Consensus 206 ~~p~~~~~~-~a~v~~~~~iYv~GG~~~~~--~~~~~~~~~~~~~~~~~W~~~~-----~~p~~~~~~~~~~~~~~~a~~ 277 (376)
T PRK14131 206 ESPFLGTAG-SAVVIKGNKLWLINGEIKPG--LRTDAVKQGKFTGNNLKWQKLP-----DLPPAPGGSSQEGVAGAFAGY 277 (376)
T ss_pred cCCCCCCCc-ceEEEECCEEEEEeeeECCC--cCChhheEEEecCCCcceeecC-----CCCCCCcCCcCCccceEecee
Confidence 9996 5654 78888999999999974322 1223343 5678999999998 5655553 223456
Q ss_pred ecCCCcccEEEEEcCCCCC--------------------------CceeEeceEEeeccCCCCcCCCCCCCCeEEEeecc
Q 013264 320 SYRLQQHQWLWFLGKEQQQ--------------------------NGEVVKGKIVSSIVPLPKSVTEGSSSPCVSVTTLH 373 (446)
Q Consensus 320 ~~~~~~~~~lyv~GG~~~~--------------------------~~~~~~W~~~~~~~~~p~~~~~~R~~~~~~~~~~~ 373 (446)
+++ +|||+||.+.. ++++++|+.+. +|| .+|.++++++++
T Consensus 278 ~~~-----~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp----~~r~~~~av~~~-- 343 (376)
T PRK14131 278 SNG-----VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG---ELP----QGLAYGVSVSWN-- 343 (376)
T ss_pred ECC-----EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC---cCC----CCccceEEEEeC--
Confidence 676 99999997521 33455676554 444 456677788888
Q ss_pred ccCCCceEEEEeccCCCC
Q 013264 374 NSQQQQKVFVMTGNGGRG 391 (446)
Q Consensus 374 ~~~~~~~l~v~GG~~~~~ 391 (446)
++|||+||....+
T Consensus 344 -----~~iyv~GG~~~~~ 356 (376)
T PRK14131 344 -----NGVLLIGGETAGG 356 (376)
T ss_pred -----CEEEEEcCCCCCC
Confidence 9999999986543
No 18
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=9.2e-31 Score=229.31 Aligned_cols=233 Identities=16% Similarity=0.270 Sum_probs=181.9
Q ss_pred ccceEEEEeeCCEEEEEeCcCCC-CCC--ccCeEEEEeCcCCCCcEEEccC-------------CccCccceEEEEECCc
Q 013264 155 MFCQCVAVPASRKLLLIGGWDPI-TLE--PVPDVYVLDMVNNSSRWRRVKP-------------MSVARSFFACAVVGAS 218 (446)
Q Consensus 155 ~~~~~~~~~~~~~lyv~GG~~~~-~~~--~~~~v~~~d~~~~t~~W~~~~~-------------~p~~r~~~~~~~~~d~ 218 (446)
|..|+++ +++..||-|||+... ... ..-+|.++|. .+-+|.++|+ .|..|.+|+++.++ +
T Consensus 14 RVNHAav-aVG~riYSFGGYCsGedy~~~~piDVH~lNa--~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-d 89 (392)
T KOG4693|consen 14 RVNHAAV-AVGSRIYSFGGYCSGEDYDAKDPIDVHVLNA--ENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-D 89 (392)
T ss_pred cccceee-eecceEEecCCcccccccccCCcceeEEeec--cceeEEecCcccccccccCCCCccchhhcCceEEEEc-c
Confidence 4455554 589999999998432 221 2347999999 8899999976 35679999999999 7
Q ss_pred EEEEEeccCCCCCCCCeEEEEECCCCcEEec---CCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCC
Q 013264 219 TVCVAGGHDGQKNALKSAEVYDVEADEWRML---PEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTG 295 (446)
Q Consensus 219 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~ 295 (446)
++||.||.+++....+.++.||+++++|.+. .-+|.+|.+ |++++.++.+|||||+.... ..++++++++|..|.
T Consensus 90 ~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDG-HsAcV~gn~MyiFGGye~~a-~~FS~d~h~ld~~Tm 167 (392)
T KOG4693|consen 90 KAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDG-HSACVWGNQMYIFGGYEEDA-QRFSQDTHVLDFATM 167 (392)
T ss_pred eEEEEcCccCcccccceeeeeccccccccccceeeecCCccCC-ceeeEECcEEEEecChHHHH-HhhhccceeEeccce
Confidence 9999999998777889999999999999976 467889998 89999999999999996543 357899999999999
Q ss_pred ceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC------------------CceeEeceEEeeccCCCCc
Q 013264 296 SWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ------------------NGEVVKGKIVSSIVPLPKS 357 (446)
Q Consensus 296 ~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~------------------~~~~~~W~~~~~~~~~p~~ 357 (446)
+|+.+... +..|.-|.+|+++++++ +||||||.... +..+..|..-... ..
T Consensus 168 tWr~~~Tk--g~PprwRDFH~a~~~~~-----~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~----~~ 236 (392)
T KOG4693|consen 168 TWREMHTK--GDPPRWRDFHTASVIDG-----MMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN----TM 236 (392)
T ss_pred eeeehhcc--CCCchhhhhhhhhhccc-----eEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCC----Cc
Confidence 99999863 24457788999999998 99999998765 1233445443222 12
Q ss_pred CCCCCCCCeEEEeeccccCCCceEEEEeccCCCCCCCCCccccccccccCCcceEEEEEeccCCCcCeeee
Q 013264 358 VTEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGRGCSSSSALSSFICNECEGEGAFIMERDMSNGNIKWDHV 428 (446)
Q Consensus 358 ~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W~~~ 428 (446)
.+.+|..|++.+++ ++||+|||+++.- ....++++. | ||.+..|+.+
T Consensus 237 ~P~GRRSHS~fvYn-------g~~Y~FGGYng~l-------------n~HfndLy~---F-dP~t~~W~~I 283 (392)
T KOG4693|consen 237 KPGGRRSHSTFVYN-------GKMYMFGGYNGTL-------------NVHFNDLYC---F-DPKTSMWSVI 283 (392)
T ss_pred CCCcccccceEEEc-------ceEEEecccchhh-------------hhhhcceee---c-ccccchheee
Confidence 35567788999998 9999999997764 233455554 4 9999999943
No 19
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=262.11 Aligned_cols=200 Identities=16% Similarity=0.303 Sum_probs=170.7
Q ss_pred eeEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce
Q 013264 131 YGLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210 (446)
Q Consensus 131 ~~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~ 210 (446)
..++.||+.+++|..+++++ .+|..+++++ .+++||++||.... ...+++++||+ .+++|+.+++||.+|..+
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~--~~R~~~~~~~-~~~~lyv~GG~~~~--~~~~~v~~yd~--~~~~W~~~~~lp~~r~~~ 383 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELI--YPRKNPGVTV-FNNRIYVIGGIYNS--ISLNTVESWKP--GESKWREEPPLIFPRYNP 383 (534)
T ss_pred ccEEEEeCCCCeeeECCCCC--cccccceEEE-ECCEEEEEeCCCCC--EecceEEEEcC--CCCceeeCCCcCcCCccc
Confidence 36889999999999999998 5888777665 89999999998643 35788999999 899999999999999999
Q ss_pred EEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEE
Q 013264 211 ACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECY 290 (446)
Q Consensus 211 ~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~y 290 (446)
++++++ ++|||+||.......++++++||+.+++|+.++++|.+|.. +++++.+++||++||..........+.+++|
T Consensus 384 ~~~~~~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 461 (534)
T PHA03098 384 CVVNVN-NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYHDGKIYVIGGISYIDNIKVYNIVESY 461 (534)
T ss_pred eEEEEC-CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEECCEEEEECCccCCCCCcccceEEEe
Confidence 999998 89999999765544578999999999999999999999987 7888899999999998644322234669999
Q ss_pred eCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC---------CceeEeceEEe
Q 013264 291 DPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ---------NGEVVKGKIVS 349 (446)
Q Consensus 291 d~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~---------~~~~~~W~~~~ 349 (446)
|+++++|+.++ +++.+|..++++++++ +|||+||.... ++++++|+.+.
T Consensus 462 d~~~~~W~~~~-----~~~~~r~~~~~~~~~~-----~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 462 NPVTNKWTELS-----SLNFPRINASLCIFNN-----KIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred cCCCCceeeCC-----CCCcccccceEEEECC-----EEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 99999999998 6778899999998887 99999998743 45667787665
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.96 E-value=9.3e-29 Score=216.75 Aligned_cols=236 Identities=18% Similarity=0.280 Sum_probs=189.8
Q ss_pred eeEEEEECCCCcEEecCCC------CC-----CCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEE
Q 013264 131 YGLTIFNASNGTWERIRPH------VG-----RIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRR 199 (446)
Q Consensus 131 ~~~~~ydp~~~~W~~l~~~------~~-----~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~ 199 (446)
..+++++..+-+|.++++- +. +..|+.|.++. +++++||.||.+.... ..+.++.||| .++.|.+
T Consensus 44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~-y~d~~yvWGGRND~eg-aCN~Ly~fDp--~t~~W~~ 119 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVE-YQDKAYVWGGRNDDEG-ACNLLYEFDP--ETNVWKK 119 (392)
T ss_pred ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEE-EcceEEEEcCccCccc-ccceeeeecc--ccccccc
Confidence 4689999999999999881 11 34577777765 8999999999976433 6889999999 9999987
Q ss_pred c---cCCccCccceEEEEECCcEEEEEeccCCCC-CCCCeEEEEECCCCcEEecCC---CCccCCcceEEEEECCEEEEE
Q 013264 200 V---KPMSVARSFFACAVVGASTVCVAGGHDGQK-NALKSAEVYDVEADEWRMLPE---MDEERDECQGVCLEGDRFFVV 272 (446)
Q Consensus 200 ~---~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~-~~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~~~~~lyv~ 272 (446)
. .-.|.+|.+|++++++ +.+|+|||+..+. ...++++++|..|.+|+.+.. .|.=|.. |+++++++.+|||
T Consensus 120 p~v~G~vPgaRDGHsAcV~g-n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDF-H~a~~~~~~MYiF 197 (392)
T KOG4693|consen 120 PEVEGFVPGARDGHSACVWG-NQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDF-HTASVIDGMMYIF 197 (392)
T ss_pred cceeeecCCccCCceeeEEC-cEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhh-hhhhhccceEEEe
Confidence 6 4578999999999999 8999999987553 346899999999999998853 3344555 8888899999999
Q ss_pred eCCCCCCC------CcccCcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC--------
Q 013264 273 SGYGTESQ------GRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ-------- 338 (446)
Q Consensus 273 GG~~~~~~------~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~-------- 338 (446)
||...... ..+.+.+.++|+.|+.|...+.. .-.|..|..|++-+.++ +||+|||+++.
T Consensus 198 GGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~--~~~P~GRRSHS~fvYng-----~~Y~FGGYng~ln~HfndL 270 (392)
T KOG4693|consen 198 GGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN--TMKPGGRRSHSTFVYNG-----KMYMFGGYNGTLNVHFNDL 270 (392)
T ss_pred ccccccCCCccchhhhhcceeEEEeccccccccCCCC--CcCCCcccccceEEEcc-----eEEEecccchhhhhhhcce
Confidence 99864321 24567899999999999987642 13578899999999998 99999999886
Q ss_pred ---CceeEeceEEeeccCCCCcCCCCCCCCeEEEeeccccCCCceEEEEeccCCC
Q 013264 339 ---NGEVVKGKIVSSIVPLPKSVTEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGR 390 (446)
Q Consensus 339 ---~~~~~~W~~~~~~~~~p~~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~ 390 (446)
++.+..|+.++..+.-| .+|...|.++.+ +|+|+|||..-.
T Consensus 271 y~FdP~t~~W~~I~~~Gk~P----~aRRRqC~~v~g-------~kv~LFGGTsP~ 314 (392)
T KOG4693|consen 271 YCFDPKTSMWSVISVRGKYP----SARRRQCSVVSG-------GKVYLFGGTSPL 314 (392)
T ss_pred eecccccchheeeeccCCCC----CcccceeEEEEC-------CEEEEecCCCCC
Confidence 67888999998765654 345567777777 999999998653
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.94 E-value=2.8e-25 Score=224.00 Aligned_cols=235 Identities=20% Similarity=0.311 Sum_probs=186.0
Q ss_pred CCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEcc---CCccCccceEEEEECCcEEEEEeccCC
Q 013264 152 RIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVK---PMSVARSFFACAVVGASTVCVAGGHDG 228 (446)
Q Consensus 152 ~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~---~~p~~r~~~~~~~~~d~~iyv~GG~~~ 228 (446)
+.+|..|+++. +++++|||||..........++|++|. .+..|.... ..|.+|.+|.+++++ .+||++||.+.
T Consensus 58 p~~R~~hs~~~-~~~~~~vfGG~~~~~~~~~~dl~~~d~--~~~~w~~~~~~g~~p~~r~g~~~~~~~-~~l~lfGG~~~ 133 (482)
T KOG0379|consen 58 PIPRAGHSAVL-IGNKLYVFGGYGSGDRLTDLDLYVLDL--ESQLWTKPAATGDEPSPRYGHSLSAVG-DKLYLFGGTDK 133 (482)
T ss_pred cchhhccceeE-ECCEEEEECCCCCCCccccceeEEeec--CCcccccccccCCCCCcccceeEEEEC-CeEEEEccccC
Confidence 36788888887 699999999986544322226999999 889998873 467899999999999 79999999986
Q ss_pred CCCCCCeEEEEECCCCcEEecC---CCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcccCCC
Q 013264 229 QKNALKSAEVYDVEADEWRMLP---EMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDHVWP 305 (446)
Q Consensus 229 ~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p 305 (446)
....+++++.||+.|++|+.+. .+|.+|.+ |++++.+++||||||.+... ...+++++||+++.+|.++...
T Consensus 134 ~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~-Hs~~~~g~~l~vfGG~~~~~--~~~ndl~i~d~~~~~W~~~~~~-- 208 (482)
T KOG0379|consen 134 KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAG-HSATVVGTKLVVFGGIGGTG--DSLNDLHIYDLETSTWSELDTQ-- 208 (482)
T ss_pred CCCChhheEeccCCCCcEEEecCcCCCCCCccc-ceEEEECCEEEEECCccCcc--cceeeeeeeccccccceecccC--
Confidence 5456899999999999999874 56788987 89999999999999987654 2789999999999999999864
Q ss_pred CCCCCCCCceEEEEecCCCcccEEEEEcCCCC-C---------CceeEeceEEeeccCCCCcCCCCCCCCeEEEeecccc
Q 013264 306 FPSLSPRGSTATITSYRLQQHQWLWFLGKEQQ-Q---------NGEVVKGKIVSSIVPLPKSVTEGSSSPCVSVTTLHNS 375 (446)
Q Consensus 306 ~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~-~---------~~~~~~W~~~~~~~~~p~~~~~~R~~~~~~~~~~~~~ 375 (446)
.+.|.||.+|+++++++ +++|+||.+. . +..+..|......+. .+.+|..|.++..+
T Consensus 209 g~~P~pR~gH~~~~~~~-----~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~----~p~~R~~h~~~~~~---- 275 (482)
T KOG0379|consen 209 GEAPSPRYGHAMVVVGN-----KLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGD----LPSPRSGHSLTVSG---- 275 (482)
T ss_pred CCCCCCCCCceEEEECC-----eEEEEeccccCCceecceEeeecccceeeeccccCC----CCCCcceeeeEEEC----
Confidence 35678999999999998 9999999883 3 334455554433333 45688999999777
Q ss_pred CCCceEEEEeccCCCCCCCCCccccccccccCCcceEEEEEeccCCCcCeeee
Q 013264 376 QQQQKVFVMTGNGGRGCSSSSALSSFICNECEGEGAFIMERDMSNGNIKWDHV 428 (446)
Q Consensus 376 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W~~~ 428 (446)
++++|+||..... ...+.+.+. | |.++..|..+
T Consensus 276 ---~~~~l~gG~~~~~-------------~~~l~~~~~---l-~~~~~~w~~~ 308 (482)
T KOG0379|consen 276 ---DHLLLFGGGTDPK-------------QEPLGDLYG---L-DLETLVWSKV 308 (482)
T ss_pred ---CEEEEEcCCcccc-------------ccccccccc---c-cccccceeee
Confidence 9999999997652 001233443 4 9999999944
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.94 E-value=3.5e-25 Score=205.17 Aligned_cols=246 Identities=17% Similarity=0.222 Sum_probs=183.5
Q ss_pred CCccceEEEE-eeCCEEEEEeCc--CCCCCCccCeEEEEeCcCCCCcEEEc--cCCccCccceEEEEECCcEEEEEeccC
Q 013264 153 IPMFCQCVAV-PASRKLLLIGGW--DPITLEPVPDVYVLDMVNNSSRWRRV--KPMSVARSFFACAVVGASTVCVAGGHD 227 (446)
Q Consensus 153 ~p~~~~~~~~-~~~~~lyv~GG~--~~~~~~~~~~v~~~d~~~~t~~W~~~--~~~p~~r~~~~~~~~~d~~iyv~GG~~ 227 (446)
.||......+ ...+.|++|||. ++......+++|.||. .+++|+++ |+-|.||+.|.++++..|.+|++||.-
T Consensus 65 spRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~--k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEf 142 (521)
T KOG1230|consen 65 SPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNT--KKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEF 142 (521)
T ss_pred CCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEec--cccceeEeccCCCcCCCccceeEEeccCeEEEecccc
Confidence 4666544443 235689999996 4444456799999999 99999998 667899999999998878999999964
Q ss_pred CCCC-----CCCeEEEEECCCCcEEec--CCCCccCCcceEEEEECCEEEEEeCCCCC-CCCcccCcEEEEeCCCCceEE
Q 013264 228 GQKN-----ALKSAEVYDVEADEWRML--PEMDEERDECQGVCLEGDRFFVVSGYGTE-SQGRFKPDAECYDPKTGSWSK 299 (446)
Q Consensus 228 ~~~~-----~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~v~~yd~~~~~W~~ 299 (446)
...+ -..++|.||..+++|+++ +.-|.+|++ |-+++...+|++|||+... ....+.|+|++||+++-+|++
T Consensus 143 aSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSG-HRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~K 221 (521)
T KOG1230|consen 143 ASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSG-HRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSK 221 (521)
T ss_pred CCcchhhhhhhhheeeeeeccchheeeccCCCCCCCcc-ceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeee
Confidence 3211 258999999999999988 467899998 8999999999999998543 334578999999999999999
Q ss_pred cccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC------------------Ccee-----EeceEEeeccCCCC
Q 013264 300 FDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ------------------NGEV-----VKGKIVSSIVPLPK 356 (446)
Q Consensus 300 ~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~------------------~~~~-----~~W~~~~~~~~~p~ 356 (446)
+.+ +...|.||+++...+... +.|||.||+... +++. ..|+.+... .+
T Consensus 222 lep--sga~PtpRSGcq~~vtpq----g~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~-g~-- 292 (521)
T KOG1230|consen 222 LEP--SGAGPTPRSGCQFSVTPQ----GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPS-GV-- 292 (521)
T ss_pred ccC--CCCCCCCCCcceEEecCC----CcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCC-CC--
Confidence 986 334689999999888844 489999998764 1122 445555544 22
Q ss_pred cCCCCCCCCeEEEeeccccCCCceEEEEeccCCCCCCCCCccccccccccCCcceEEEEEeccCCCcCeee
Q 013264 357 SVTEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGRGCSSSSALSSFICNECEGEGAFIMERDMSNGNIKWDH 427 (446)
Q Consensus 357 ~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W~~ 427 (446)
.+.+|+++++++.. +++-+.|||.-..... .+.|+++ +.+-.++ | |...++|+.
T Consensus 293 -kPspRsgfsv~va~------n~kal~FGGV~D~eee-eEsl~g~------F~NDLy~--f-dlt~nrW~~ 346 (521)
T KOG1230|consen 293 -KPSPRSGFSVAVAK------NHKALFFGGVCDLEEE-EESLSGE------FFNDLYF--F-DLTRNRWSE 346 (521)
T ss_pred -CCCCCCceeEEEec------CCceEEecceeccccc-chhhhhh------hhhhhhh--e-ecccchhhH
Confidence 26789999999887 5799999998652100 0222221 1222233 6 999999993
No 23
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=6.1e-24 Score=201.34 Aligned_cols=251 Identities=16% Similarity=0.229 Sum_probs=184.2
Q ss_pred eEEEEECCCCcEEecCCCCC-CCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEcc-------CC
Q 013264 132 GLTIFNASNGTWERIRPHVG-RIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVK-------PM 203 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~-~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~-------~~ 203 (446)
.+++|+..+++|..-+--.. +.+...|.. +..+.+||+|||+.+- .+++|++|.+-- ....|+++. ..
T Consensus 58 ELHvYNTatnqWf~PavrGDiPpgcAA~Gf-vcdGtrilvFGGMvEY-GkYsNdLYELQa--sRWeWkrlkp~~p~nG~p 133 (830)
T KOG4152|consen 58 ELHVYNTATNQWFAPAVRGDIPPGCAAFGF-VCDGTRILVFGGMVEY-GKYSNDLYELQA--SRWEWKRLKPKTPKNGPP 133 (830)
T ss_pred hhhhhccccceeecchhcCCCCCchhhcce-EecCceEEEEccEeee-ccccchHHHhhh--hhhhHhhcCCCCCCCCCC
Confidence 57899999999976443222 122333443 4479999999998653 236888877766 567788873 35
Q ss_pred ccCccceEEEEECCcEEEEEeccCCCC--------CCCCeEEEEECCCC----cEEec---CCCCccCCcceEEEEE---
Q 013264 204 SVARSFFACAVVGASTVCVAGGHDGQK--------NALKSAEVYDVEAD----EWRML---PEMDEERDECQGVCLE--- 265 (446)
Q Consensus 204 p~~r~~~~~~~~~d~~iyv~GG~~~~~--------~~~~~~~~yd~~t~----~W~~~---~~~~~~r~~~~~~~~~--- 265 (446)
|.||.+|+...++ +|-|+|||..++. .+++++++.+..-+ .|... ..+|.+|.. |.++++
T Consensus 134 PCPRlGHSFsl~g-nKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES-HTAViY~eK 211 (830)
T KOG4152|consen 134 PCPRLGHSFSLVG-NKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES-HTAVIYTEK 211 (830)
T ss_pred CCCccCceeEEec-cEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccc-ceeEEEEec
Confidence 7899999999999 8999999975332 35899999987744 58865 578889998 666655
Q ss_pred ---CCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC----
Q 013264 266 ---GDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ---- 338 (446)
Q Consensus 266 ---~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~---- 338 (446)
..++||+||+.+- .+.+++.+|++|-+|.+.... +-.|.||+.|++..+++ +||||||+-..
T Consensus 212 Ds~~skmvvyGGM~G~----RLgDLW~Ldl~Tl~W~kp~~~--G~~PlPRSLHsa~~IGn-----KMyvfGGWVPl~~~~ 280 (830)
T KOG4152|consen 212 DSKKSKMVVYGGMSGC----RLGDLWTLDLDTLTWNKPSLS--GVAPLPRSLHSATTIGN-----KMYVFGGWVPLVMDD 280 (830)
T ss_pred cCCcceEEEEcccccc----cccceeEEecceeeccccccc--CCCCCCcccccceeecc-----eeEEecceeeeeccc
Confidence 2389999999763 588999999999999988643 24568999999999998 99999997543
Q ss_pred -------------------CceeEeceEEeeccCCCCcCCCCCCCCeEEEeeccccCCCceEEEEeccCCCCCCCCCccc
Q 013264 339 -------------------NGEVVKGKIVSSIVPLPKSVTEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGRGCSSSSALS 399 (446)
Q Consensus 339 -------------------~~~~~~W~~~~~~~~~p~~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 399 (446)
+.++..|+.+-....-....+.+|.+||+++++ .+|||..|+++-. .+.+
T Consensus 281 ~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAig-------tRlYiWSGRDGYr----KAwn 349 (830)
T KOG4152|consen 281 VKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIG-------TRLYIWSGRDGYR----KAWN 349 (830)
T ss_pred cccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEec-------cEEEEEeccchhh----Hhhc
Confidence 124455655432211112246689999999999 9999999997654 2333
Q ss_pred cccccccCCcceEEE
Q 013264 400 SFICNECEGEGAFIM 414 (446)
Q Consensus 400 ~~~~~~~~~~~~~~~ 414 (446)
||..+.|+|++
T Consensus 350 ----nQVCCkDlWyL 360 (830)
T KOG4152|consen 350 ----NQVCCKDLWYL 360 (830)
T ss_pred ----cccchhhhhhh
Confidence 36677899977
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.91 E-value=2e-22 Score=203.39 Aligned_cols=238 Identities=19% Similarity=0.296 Sum_probs=188.1
Q ss_pred eEEEEECCCCcEEecCCCCC-CCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEcc---CCccCc
Q 013264 132 GLTIFNASNGTWERIRPHVG-RIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVK---PMSVAR 207 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~-~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~---~~p~~r 207 (446)
.+++||..+..|........ +.+|..|+.++ ++++||+|||.+.. ....++++.||+ .|++|..+. .+|.+|
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~-~~~~l~lfGG~~~~-~~~~~~l~~~d~--~t~~W~~l~~~~~~P~~r 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSA-VGDKLYLFGGTDKK-YRNLNELHSLDL--STRTWSLLSPTGDPPPPR 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEE-ECCeEEEEccccCC-CCChhheEeccC--CCCcEEEecCcCCCCCCc
Confidence 48999999999988765443 46788888777 79999999998752 335789999999 999999884 468899
Q ss_pred cceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEec---CCCCccCCcceEEEEECCEEEEEeCCCCCCCCccc
Q 013264 208 SFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRML---PEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFK 284 (446)
Q Consensus 208 ~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~ 284 (446)
.+|++++++ .+|||+||.+.....++++++||+++.+|.++ ...|.||.+ |++++.+++++++||.... ..++
T Consensus 165 ~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g-H~~~~~~~~~~v~gG~~~~--~~~l 240 (482)
T KOG0379|consen 165 AGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYG-HAMVVVGNKLLVFGGGDDG--DVYL 240 (482)
T ss_pred ccceEEEEC-CEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCC-ceEEEECCeEEEEeccccC--Ccee
Confidence 999999999 79999999987776889999999999999988 467789998 8999999999999998722 3589
Q ss_pred CcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC-----------CceeEeceEEeeccC
Q 013264 285 PDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ-----------NGEVVKGKIVSSIVP 353 (446)
Q Consensus 285 ~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~-----------~~~~~~W~~~~~~~~ 353 (446)
++++.+|+.+.+|.++.. ....|.+|..|..++.+. +++++||.... +.++..|.++...+
T Consensus 241 ~D~~~ldl~~~~W~~~~~--~g~~p~~R~~h~~~~~~~-----~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~- 312 (482)
T KOG0379|consen 241 NDVHILDLSTWEWKLLPT--GGDLPSPRSGHSLTVSGD-----HLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG- 312 (482)
T ss_pred cceEeeecccceeeeccc--cCCCCCCcceeeeEEECC-----EEEEEcCCcccccccccccccccccccceeeeeccc-
Confidence 999999999999997664 236789999999997777 99999998762 33677898887663
Q ss_pred CCCcCCCCCCCCeEEEeeccccCCCceEEEEeccCCC
Q 013264 354 LPKSVTEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGR 390 (446)
Q Consensus 354 ~p~~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~ 390 (446)
.....+|..++.+.....+. ..+.++||....
T Consensus 313 --~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 344 (482)
T KOG0379|consen 313 --VVRPSPRLGHAAELIDELGK---DGLGILGGNQIL 344 (482)
T ss_pred --cccccccccccceeeccCCc---cceeeecCcccc
Confidence 12244556666666553222 335566664443
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=2.8e-22 Score=190.10 Aligned_cols=274 Identities=14% Similarity=0.172 Sum_probs=191.3
Q ss_pred CcEEecCCCCC--CCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEc---cCCccCccceEEEEE
Q 013264 141 GTWERIRPHVG--RIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRV---KPMSVARSFFACAVV 215 (446)
Q Consensus 141 ~~W~~l~~~~~--~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~---~~~p~~r~~~~~~~~ 215 (446)
-+|+++....+ +.||..|.+++ +...|.||||.++. ..+++++||. .+++|..- .+.|.+-..|+.+..
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVa-ikELiviFGGGNEG---iiDELHvYNT--atnqWf~PavrGDiPpgcAA~Gfvcd 90 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVA-IKELIVIFGGGNEG---IIDELHVYNT--ATNQWFAPAVRGDIPPGCAAFGFVCD 90 (830)
T ss_pred cceEEEecccCCCCCccccchhee-eeeeEEEecCCccc---chhhhhhhcc--ccceeecchhcCCCCCchhhcceEec
Confidence 36877766544 35677787776 78999999997643 5788999999 89999754 457777777887777
Q ss_pred CCcEEEEEeccCCCCCCCCeEEEEECCCCcEEec-------CCCCccCCcceEEEEECCEEEEEeCCCCCC------CCc
Q 013264 216 GASTVCVAGGHDGQKNALKSAEVYDVEADEWRML-------PEMDEERDECQGVCLEGDRFFVVSGYGTES------QGR 282 (446)
Q Consensus 216 ~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-------~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~------~~~ 282 (446)
+ .+||||||..+.+.+.++++..-...-.|.++ .+.|.+|.+ |+..+.+++-|+|||..++. ...
T Consensus 91 G-trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlG-HSFsl~gnKcYlFGGLaNdseDpknNvPr 168 (830)
T KOG4152|consen 91 G-TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLG-HSFSLVGNKCYLFGGLANDSEDPKNNVPR 168 (830)
T ss_pred C-ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccC-ceeEEeccEeEEeccccccccCcccccch
Confidence 7 89999999988777778766555555567776 346788988 89999999999999974432 235
Q ss_pred ccCcEEEEeCCCC----ceEEcccCCCCCCCCCCCceEEEEecCCCc-ccEEEEEcCCCCC--------CceeEeceEEe
Q 013264 283 FKPDAECYDPKTG----SWSKFDHVWPFPSLSPRGSTATITSYRLQQ-HQWLWFLGKEQQQ--------NGEVVKGKIVS 349 (446)
Q Consensus 283 ~~~~v~~yd~~~~----~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~-~~~lyv~GG~~~~--------~~~~~~W~~~~ 349 (446)
++++++..++.-+ .|...-.. +..|.+|..|.+++...-|. ..+|||+||..+. +.++..|.+.+
T Consensus 169 YLnDlY~leL~~Gsgvv~W~ip~t~--Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~ 246 (830)
T KOG4152|consen 169 YLNDLYILELRPGSGVVAWDIPITY--GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPS 246 (830)
T ss_pred hhcceEEEEeccCCceEEEeccccc--CCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeeccccc
Confidence 7899999988755 48776542 35778999999998832122 4689999999886 56888897765
Q ss_pred eccCCCCcCCCCCCCCeEEEeeccccCCCceEEEEeccCCC-CCCCCCccccccccccCCcceEEEEEeccCCCcCeeee
Q 013264 350 SIVPLPKSVTEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGR-GCSSSSALSSFICNECEGEGAFIMERDMSNGNIKWDHV 428 (446)
Q Consensus 350 ~~~~~p~~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W~~~ 428 (446)
..+-. +.+|+-|.+++++ +++|||||.--. .+... ...-+| +.++-. .+.+. |.++..|..+
T Consensus 247 ~~G~~----PlPRSLHsa~~IG-------nKMyvfGGWVPl~~~~~~--~~~hek-EWkCTs--sl~cl-Nldt~~W~tl 309 (830)
T KOG4152|consen 247 LSGVA----PLPRSLHSATTIG-------NKMYVFGGWVPLVMDDVK--VATHEK-EWKCTS--SLACL-NLDTMAWETL 309 (830)
T ss_pred ccCCC----CCCcccccceeec-------ceeEEecceeeeeccccc--cccccc-eeeecc--ceeee-eecchheeee
Confidence 43221 3355666789998 999999997321 00000 000000 111111 22224 9999999922
Q ss_pred --------cCCCCcccccccc
Q 013264 429 --------HLPVGFSGFPCSA 441 (446)
Q Consensus 429 --------~~p~~~~~~~~~~ 441 (446)
..|+.++||...+
T Consensus 310 ~~d~~ed~tiPR~RAGHCAvA 330 (830)
T KOG4152|consen 310 LMDTLEDNTIPRARAGHCAVA 330 (830)
T ss_pred eeccccccccccccccceeEE
Confidence 2678888876544
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.88 E-value=2.7e-21 Score=179.47 Aligned_cols=198 Identities=17% Similarity=0.257 Sum_probs=161.9
Q ss_pred ceeEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCC----CCCCccCeEEEEeCcCCCCcEEEc--cCC
Q 013264 130 QYGLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDP----ITLEPVPDVYVLDMVNNSSRWRRV--KPM 203 (446)
Q Consensus 130 ~~~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~----~~~~~~~~v~~~d~~~~t~~W~~~--~~~ 203 (446)
...++.||..++.|..+.....+.||..|.+++...|.||+|||.-. ......+++|.||. .+++|.++ +.-
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~--~trkweql~~~g~ 174 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDL--KTRKWEQLEFGGG 174 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeee--ccchheeeccCCC
Confidence 34678999999999998777666899999988877799999999622 22334689999999 89999998 457
Q ss_pred ccCccceEEEEECCcEEEEEeccCCC---CCCCCeEEEEECCCCcEEecCC---CCccCCcceEEEEE-CCEEEEEeCCC
Q 013264 204 SVARSFFACAVVGASTVCVAGGHDGQ---KNALKSAEVYDVEADEWRMLPE---MDEERDECQGVCLE-GDRFFVVSGYG 276 (446)
Q Consensus 204 p~~r~~~~~~~~~d~~iyv~GG~~~~---~~~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~~-~~~lyv~GG~~ 276 (446)
|.+|++|-+++.. .+|++|||+-.. ..+++++++||+.|=+|+++.+ -|.+|++ +.+++. +|.|||.|||.
T Consensus 175 PS~RSGHRMvawK-~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSG-cq~~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 175 PSPRSGHRMVAWK-RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG-CQFSVTPQGGIVVYGGYS 252 (521)
T ss_pred CCCCccceeEEee-eeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCc-ceEEecCCCcEEEEcchh
Confidence 8999999999999 899999997543 2368999999999999999954 4789998 566655 99999999985
Q ss_pred C------CCCCcccCcEEEEeCCC-----CceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCC
Q 013264 277 T------ESQGRFKPDAECYDPKT-----GSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQ 337 (446)
Q Consensus 277 ~------~~~~~~~~~v~~yd~~~-----~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~ 337 (446)
. .+.+...++++.+++++ -.|+++... .-.|.||.+.++++..+ ++-|.|||...
T Consensus 253 K~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~--g~kPspRsgfsv~va~n----~kal~FGGV~D 318 (521)
T KOG1230|consen 253 KQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPS--GVKPSPRSGFSVAVAKN----HKALFFGGVCD 318 (521)
T ss_pred HhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCC--CCCCCCCCceeEEEecC----CceEEecceec
Confidence 2 23355678999999998 578888743 23578999999998887 79999999876
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.58 E-value=1.2e-13 Score=127.49 Aligned_cols=238 Identities=19% Similarity=0.249 Sum_probs=154.5
Q ss_pred EEEEECC--CCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCC---CCccCeEEEEeCcCCCCcEEEccC-CccC
Q 013264 133 LTIFNAS--NGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPIT---LEPVPDVYVLDMVNNSSRWRRVKP-MSVA 206 (446)
Q Consensus 133 ~~~ydp~--~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~---~~~~~~v~~~d~~~~t~~W~~~~~-~p~~ 206 (446)
++..|.. ...|++++..|. .+|- ..+.+.++++||||||..... .+..+++|+||| .+++|.++.. .|..
T Consensus 60 fy~ldL~~~~k~W~~~a~FpG-~~rn-qa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p--~~nsW~kl~t~sP~g 135 (381)
T COG3055 60 FYVLDLKKPGKGWTKIADFPG-GARN-QAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDP--STNSWHKLDTRSPTG 135 (381)
T ss_pred ceehhhhcCCCCceEcccCCC-cccc-cchheeeCCeEEEeeccccCCCCCceEeeeeEEecC--CCChhheeccccccc
Confidence 4444544 358999999996 4454 444455899999999974322 335789999999 8899999965 4555
Q ss_pred ccceEEEEECCcEEEEEeccCCCC---------------------------------CCCCeEEEEECCCCcEEecCCCC
Q 013264 207 RSFFACAVVGASTVCVAGGHDGQK---------------------------------NALKSAEVYDVEADEWRMLPEMD 253 (446)
Q Consensus 207 r~~~~~~~~~d~~iyv~GG~~~~~---------------------------------~~~~~~~~yd~~t~~W~~~~~~~ 253 (446)
-..+.++.+.+.+||++||.+... .....+..|||.+++|+.+...|
T Consensus 136 l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p 215 (381)
T COG3055 136 LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP 215 (381)
T ss_pred cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc
Confidence 667778888845999999975210 12467899999999999998777
Q ss_pred c-cCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCC--CceEEcccCCCCCCCCCCCceEEEEecCCCcccEEE
Q 013264 254 E-ERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKT--GSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLW 330 (446)
Q Consensus 254 ~-~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~ly 330 (446)
. ++.+ ++++.-++++.++-|.-... .....+..+|... -+|..++.+ |.+......+.+.+..+ -.++.+.
T Consensus 216 f~~~aG-sa~~~~~n~~~lInGEiKpG--LRt~~~k~~~~~~~~~~w~~l~~l-p~~~~~~~eGvAGaf~G--~s~~~~l 289 (381)
T COG3055 216 FYGNAG-SAVVIKGNKLTLINGEIKPG--LRTAEVKQADFGGDNLKWLKLSDL-PAPIGSNKEGVAGAFSG--KSNGEVL 289 (381)
T ss_pred ccCccC-cceeecCCeEEEEcceecCC--ccccceeEEEeccCceeeeeccCC-CCCCCCCccccceeccc--eeCCeEE
Confidence 5 5554 56666677788888864332 3445667777654 489999854 11221222233322222 1235888
Q ss_pred EEcCCCCC---------------------CceeEec--eEEeeccCCCCcCCCCCCCCeEEEeeccccCCCceEEEEecc
Q 013264 331 FLGKEQQQ---------------------NGEVVKG--KIVSSIVPLPKSVTEGSSSPCVSVTTLHNSQQQQKVFVMTGN 387 (446)
Q Consensus 331 v~GG~~~~---------------------~~~~~~W--~~~~~~~~~p~~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~ 387 (446)
|.||.... ..+...| ..|..++.+|. +..+...+..+ +.||++||.
T Consensus 290 v~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~----~l~YG~s~~~n-------n~vl~IGGE 358 (381)
T COG3055 290 VAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQ----GLAYGVSLSYN-------NKVLLIGGE 358 (381)
T ss_pred EecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCC----CccceEEEecC-------CcEEEEccc
Confidence 88886654 0111111 33455556765 23334445555 999999999
Q ss_pred CCCC
Q 013264 388 GGRG 391 (446)
Q Consensus 388 ~~~~ 391 (446)
...+
T Consensus 359 ~~~G 362 (381)
T COG3055 359 TSGG 362 (381)
T ss_pred cCCC
Confidence 8887
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.53 E-value=4e-13 Score=123.96 Aligned_cols=174 Identities=17% Similarity=0.279 Sum_probs=121.1
Q ss_pred ecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCc-cCccceEEEEECCcEEEEE
Q 013264 145 RIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMS-VARSFFACAVVGASTVCVA 223 (446)
Q Consensus 145 ~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p-~~r~~~~~~~~~d~~iyv~ 223 (446)
.+|.+| .+.... +.+..++.+||-=|.. -...+..|+......|++++..| .+|.....++++ ++|||+
T Consensus 29 ~lPdlP--vg~KnG-~Ga~ig~~~YVGLGs~------G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~-~kLyvF 98 (381)
T COG3055 29 QLPDLP--VGFKNG-AGALIGDTVYVGLGSA------GTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIG-GKLYVF 98 (381)
T ss_pred cCCCCC--cccccc-ccceecceEEEEeccC------CccceehhhhcCCCCceEcccCCCcccccchheeeC-CeEEEe
Confidence 345555 344433 3344788999976643 33578888844567899999988 557777778888 899999
Q ss_pred eccCCCC----CCCCeEEEEECCCCcEEecCC-CCccCCcceEEEEECC-EEEEEeCCCCC-------------------
Q 013264 224 GGHDGQK----NALKSAEVYDVEADEWRMLPE-MDEERDECQGVCLEGD-RFFVVSGYGTE------------------- 278 (446)
Q Consensus 224 GG~~~~~----~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~~~~~-~lyv~GG~~~~------------------- 278 (446)
||..... ...+++++|||.+|+|+++.. .|....+ +.++..++ +||++||++..
T Consensus 99 gG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G-~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~ 177 (381)
T COG3055 99 GGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVG-ASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAV 177 (381)
T ss_pred eccccCCCCCceEeeeeEEecCCCChhheecccccccccc-ceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHH
Confidence 9976433 247899999999999999863 3444444 66666666 99999997532
Q ss_pred ------------CCCcccCcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC
Q 013264 279 ------------SQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ 338 (446)
Q Consensus 279 ------------~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~ 338 (446)
.+..+...+..|||.+++|+.+... | -.++++++ ++..+ +++.++-|.-..
T Consensus 178 ~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~---p-f~~~aGsa-~~~~~----n~~~lInGEiKp 240 (381)
T COG3055 178 DKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN---P-FYGNAGSA-VVIKG----NKLTLINGEIKP 240 (381)
T ss_pred HHHHHHHhCCCHHHhcccccccccccccchhhhcCcC---c-ccCccCcc-eeecC----CeEEEEcceecC
Confidence 0011344788999999999988742 1 24566644 44444 489999887654
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.30 E-value=2.5e-12 Score=122.82 Aligned_cols=191 Identities=13% Similarity=0.251 Sum_probs=133.6
Q ss_pred CCcEEecCCCC-------C-CCCccceEEEEee-CCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEc---cCCccCc
Q 013264 140 NGTWERIRPHV-------G-RIPMFCQCVAVPA-SRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRV---KPMSVAR 207 (446)
Q Consensus 140 ~~~W~~l~~~~-------~-~~p~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~---~~~p~~r 207 (446)
+-+|.++++-. . +.-|..|-.+... .+.||+.||+++.. .+.++|.|+. ..+.|..+ ...|..|
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~--~l~DFW~Y~v--~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ--DLADFWAYSV--KENQWTCINRDTEGPGAR 313 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch--hHHHHHhhcC--CcceeEEeecCCCCCcch
Confidence 44677665543 1 2345566666422 34899999998854 5889999999 88999987 4478899
Q ss_pred cceEEEEECC-cEEEEEeccCCCC-----CCCCeEEEEECCCCcEEecC------CCCccCCcceEEEEECCE--EEEEe
Q 013264 208 SFFACAVVGA-STVCVAGGHDGQK-----NALKSAEVYDVEADEWRMLP------EMDEERDECQGVCLEGDR--FFVVS 273 (446)
Q Consensus 208 ~~~~~~~~~d-~~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~------~~~~~r~~~~~~~~~~~~--lyv~G 273 (446)
..|-++.... .|+|+.|-+-+.. ..-.++|+||..++.|..+. .-|...+. |.++|.+++ +||+|
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfD-HqM~Vd~~k~~iyVfG 392 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFD-HQMCVDSEKHMIYVFG 392 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeec-ceeeEecCcceEEEec
Confidence 9998887651 3999999865322 23478999999999999874 22444555 788888887 99999
Q ss_pred CCCCCCCCcccCcEEEEeCCCCceEEcccCCCC-----CCCCCCCceEEEEecCCCcccEEEEEcCCCCC
Q 013264 274 GYGTESQGRFKPDAECYDPKTGSWSKFDHVWPF-----PSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ 338 (446)
Q Consensus 274 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~-----~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~ 338 (446)
|....-+......+++||.....|..+...... .....|.+|.+-.+.+ ++.+|++||....
T Consensus 393 Gr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~---n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 393 GRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSK---NRCLYVFGGQRSK 459 (723)
T ss_pred CeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCC---CCeEEeccCcccc
Confidence 986543333567899999999999877531100 1113344555444433 4689999998765
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.28 E-value=1e-11 Score=84.61 Aligned_cols=50 Identities=34% Similarity=0.542 Sum_probs=45.7
Q ss_pred CccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccC
Q 013264 206 ARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEER 256 (446)
Q Consensus 206 ~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 256 (446)
||..|++++++ ++|||+||.......++++++||++|++|+++++||.+|
T Consensus 1 pR~~~s~v~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVG-GKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEEC-CEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 68899999999 899999999875557899999999999999999999887
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.15 E-value=1.2e-10 Score=79.31 Aligned_cols=50 Identities=26% Similarity=0.512 Sum_probs=42.5
Q ss_pred CccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCc
Q 013264 154 PMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVAR 207 (446)
Q Consensus 154 p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r 207 (446)
||..|++++ ++++|||+||.... ....+++++||+ .+++|+++++||.+|
T Consensus 1 pR~~~s~v~-~~~~iyv~GG~~~~-~~~~~~v~~yd~--~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVV-VGGKIYVFGGYDNS-GKYSNDVERYDP--ETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEE-ECCEEEEECCCCCC-CCccccEEEEcC--CCCcEEECCCCCCCC
Confidence 456666655 89999999998764 446899999999 999999999999987
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.09 E-value=1.5e-10 Score=77.81 Aligned_cols=47 Identities=45% Similarity=0.726 Sum_probs=42.6
Q ss_pred CccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCC
Q 013264 206 ARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMD 253 (446)
Q Consensus 206 ~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 253 (446)
||..|++++++ ++|||+||.+.....++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVG-NKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEET-TEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEEC-CEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 68999999999 899999999886668999999999999999999886
No 33
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.99 E-value=1.6e-10 Score=110.71 Aligned_cols=188 Identities=15% Similarity=0.280 Sum_probs=127.4
Q ss_pred CCCcEEEccC----------CccCccceEEEEEC-CcEEEEEeccCCCCCCCCeEEEEECCCCcEEecC---CCCccCCc
Q 013264 193 NSSRWRRVKP----------MSVARSFFACAVVG-ASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLP---EMDEERDE 258 (446)
Q Consensus 193 ~t~~W~~~~~----------~p~~r~~~~~~~~~-d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~ 258 (446)
-+-.|.++++ -|..|.+|.++... ++.||+.||+++.. .+.+.|.|+...+.|+.+. ..|..|.
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs- 314 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARS- 314 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchh-
Confidence 4567887754 25679999988766 25999999999876 6789999999999999874 4666776
Q ss_pred ceEEEEECC--EEEEEeCCCCCC---CCcccCcEEEEeCCCCceEEcccC-CCCCCCCCCCceEEEEecCCCcccEEEEE
Q 013264 259 CQGVCLEGD--RFFVVSGYGTES---QGRFKPDAECYDPKTGSWSKFDHV-WPFPSLSPRGSTATITSYRLQQHQWLWFL 332 (446)
Q Consensus 259 ~~~~~~~~~--~lyv~GG~~~~~---~~~~~~~v~~yd~~~~~W~~~~~~-~p~~~~~~r~~~~~~~~~~~~~~~~lyv~ 332 (446)
||-++..-. +||+.|-+-+.. .-...++++.||..+++|..+... -.+..|..-..|.+++..+ .+.|||+
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~---k~~iyVf 391 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSE---KHMIYVF 391 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecC---cceEEEe
Confidence 588877655 999999874321 112356899999999999988632 1123455667788887776 2349999
Q ss_pred cCCCCC------------CceeEeceEEeeccCC--C-CcCCCCCCCCeEEEeeccccCCCceEEEEeccCCC
Q 013264 333 GKEQQQ------------NGEVVKGKIVSSIVPL--P-KSVTEGSSSPCVSVTTLHNSQQQQKVFVMTGNGGR 390 (446)
Q Consensus 333 GG~~~~------------~~~~~~W~~~~~~~~~--p-~~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~~~~ 390 (446)
||..-. +.....|+.....-.. | ......|.++|+-.+. .++++|++||....
T Consensus 392 GGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~-----~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 392 GGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHS-----KNRCLYVFGGQRSK 459 (723)
T ss_pred cCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcC-----CCCeEEeccCcccc
Confidence 997544 2233456443221000 0 1112246677776655 24889999998655
No 34
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.95 E-value=8.4e-10 Score=74.81 Aligned_cols=49 Identities=27% Similarity=0.567 Sum_probs=32.1
Q ss_pred CccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCc
Q 013264 206 ARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDE 254 (446)
Q Consensus 206 ~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 254 (446)
||..|+++.+.+++|||+||.+.....++++++||+.+++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6899999999658999999998775678999999999999999988873
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.91 E-value=3.5e-09 Score=71.68 Aligned_cols=49 Identities=29% Similarity=0.569 Sum_probs=43.1
Q ss_pred CCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEE
Q 013264 165 SRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVV 215 (446)
Q Consensus 165 ~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~ 215 (446)
+++|||+||.+.......+++|+||+ .+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~--~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDL--DTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEEC--CCCEEEECCCCCCCccceEEEEC
Confidence 57999999998444557899999999 89999999999999999998864
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.90 E-value=5.1e-09 Score=70.85 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=40.8
Q ss_pred CccceEEEEECCcEEEEEecc--CCCCCCCCeEEEEECCCCcEEecCCCC
Q 013264 206 ARSFFACAVVGASTVCVAGGH--DGQKNALKSAEVYDVEADEWRMLPEMD 253 (446)
Q Consensus 206 ~r~~~~~~~~~d~~iyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~~~~ 253 (446)
+|..|++++++ ++|||+||. .......+++++||+++++|+++++|+
T Consensus 1 ~r~~hs~~~~~-~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLD-GKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEEC-CEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68899999998 899999999 333446899999999999999998875
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.83 E-value=5e-09 Score=70.30 Aligned_cols=47 Identities=30% Similarity=0.595 Sum_probs=39.1
Q ss_pred CccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCc
Q 013264 154 PMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMS 204 (446)
Q Consensus 154 p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p 204 (446)
||..+++++ .+++|||+||... ....++++++||+ .+++|+++++||
T Consensus 1 pR~~~~~~~-~~~~iyv~GG~~~-~~~~~~~v~~yd~--~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVV-VGNKIYVIGGYDG-NNQPTNSVEVYDP--ETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEE-ETTEEEEEEEBES-TSSBEEEEEEEET--TTTEEEEEEEES
T ss_pred CCccCEEEE-ECCEEEEEeeecc-cCceeeeEEEEeC--CCCEEEEcCCCC
Confidence 456666665 8999999999976 3447899999999 999999999986
No 38
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.81 E-value=2.1e-09 Score=72.03 Aligned_cols=43 Identities=33% Similarity=0.587 Sum_probs=37.8
Q ss_pred CCCChHHHHHHHhcccCccchhhHHhcccchhhhcCChHHHHH
Q 013264 17 IPGLPDEIAMECLIRVPYKFHNDLKSVCQRWLNLISSHSFYRE 59 (446)
Q Consensus 17 ~~~LPddl~~~iLarlP~~~~~~~r~VcK~w~~li~s~~f~~~ 59 (446)
|..||+||+.+||.+||..++.+++.|||+|+.++.++.+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 6789999999999999999999999999999999998877654
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.79 E-value=1.5e-08 Score=68.50 Aligned_cols=46 Identities=20% Similarity=0.448 Sum_probs=40.5
Q ss_pred cEEEEEeccC-CCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEE
Q 013264 218 STVCVAGGHD-GQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCL 264 (446)
Q Consensus 218 ~~iyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 264 (446)
++|||+||.+ .....++++++||+.+++|++++++|.+|.+ |++++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~-h~~~~ 48 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSG-HTATV 48 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccc-eEEEE
Confidence 6999999998 3455789999999999999999999999997 77665
No 40
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.76 E-value=2.6e-06 Score=78.20 Aligned_cols=140 Identities=11% Similarity=0.072 Sum_probs=84.3
Q ss_pred CeEEEEeCcCCCCcEEEccCCccCcc---c--eEEEE---ECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCc
Q 013264 183 PDVYVLDMVNNSSRWRRVKPMSVARS---F--FACAV---VGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDE 254 (446)
Q Consensus 183 ~~v~~~d~~~~t~~W~~~~~~p~~r~---~--~~~~~---~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 254 (446)
..+.++|| .|++|+.+|+.+.++. . .+.+. .++.||..+....... ....+++|++.+++|+.+...+.
T Consensus 14 ~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 14 KRLVVWNP--STGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPP 90 (230)
T ss_pred CcEEEECC--CCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCC
Confidence 36899999 8999999987554211 1 11111 1135777775532211 23688999999999999874332
Q ss_pred cCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEE-cccCCCCCCCCCCCceEEEEecCCCcccEEEEEc
Q 013264 255 ERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSK-FDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLG 333 (446)
Q Consensus 255 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~G 333 (446)
........+..+|.||-+....... ....+.+||+.+++|.+ ++. |............+.++| +|.++.
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~~--P~~~~~~~~~~~L~~~~G-----~L~~v~ 160 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIPL--PCGNSDSVDYLSLINYKG-----KLAVLK 160 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeeec--CccccccccceEEEEECC-----EEEEEE
Confidence 2111122567899999987532211 11269999999999995 542 111111122345566666 888776
Q ss_pred CC
Q 013264 334 KE 335 (446)
Q Consensus 334 G~ 335 (446)
..
T Consensus 161 ~~ 162 (230)
T TIGR01640 161 QK 162 (230)
T ss_pred ec
Confidence 53
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.73 E-value=3.7e-08 Score=66.59 Aligned_cols=46 Identities=24% Similarity=0.560 Sum_probs=38.3
Q ss_pred cCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 255 ERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 255 ~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
+|.. |++++.+++|||+||+.........+++++||+++++|++++
T Consensus 1 ~r~~-hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYG-HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred Cccc-eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 4555 899999999999999933333457899999999999999998
No 42
>smart00612 Kelch Kelch domain.
Probab=98.70 E-value=2.7e-08 Score=66.49 Aligned_cols=47 Identities=43% Similarity=0.756 Sum_probs=39.7
Q ss_pred EEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECC
Q 013264 219 TVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGD 267 (446)
Q Consensus 219 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~ 267 (446)
+||++||.... ..++++++||+.+++|+.+++|+.+|.. ++++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSG-HGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCcccc-ceEEEeCC
Confidence 48999998753 3578999999999999999999999987 67766653
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.66 E-value=3e-08 Score=67.08 Aligned_cols=49 Identities=20% Similarity=0.588 Sum_probs=30.0
Q ss_pred CccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCcc
Q 013264 154 PMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSV 205 (446)
Q Consensus 154 p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~ 205 (446)
||..|+++...++.|||+||.+... ...+++++||+ .+++|+++++||.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~-~~~~d~~~~d~--~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG-SPLNDLWIFDI--ETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T-EE---EEEEET--TTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC-cccCCEEEEEC--CCCEEEECCCCCC
Confidence 5788888874469999999986543 47899999999 8999999988873
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.58 E-value=2.4e-06 Score=77.79 Aligned_cols=145 Identities=15% Similarity=0.252 Sum_probs=101.5
Q ss_pred EEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCC----CcEEEcc-CCccCc
Q 013264 133 LTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNS----SRWRRVK-PMSVAR 207 (446)
Q Consensus 133 ~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t----~~W~~~~-~~p~~r 207 (446)
...||+.+++++.+.... ..+|.+.+...+|.+.++||.... .+.+-.|+| .+ ..|.+.+ .|..+|
T Consensus 48 s~~yD~~tn~~rpl~v~t---d~FCSgg~~L~dG~ll~tGG~~~G----~~~ir~~~p--~~~~~~~~w~e~~~~m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQT---DTFCSGGAFLPDGRLLQTGGDNDG----NKAIRIFTP--CTSDGTCDWTESPNDMQSGR 118 (243)
T ss_pred EEEEecCCCcEEeccCCC---CCcccCcCCCCCCCEEEeCCCCcc----ccceEEEec--CCCCCCCCceECcccccCCC
Confidence 457999999999987654 455655556679999999997542 345667887 43 6798876 589999
Q ss_pred cceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCC-----cEEecCC----CCccCCcceEEEEECCEEEEEeCCCCC
Q 013264 208 SFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEAD-----EWRMLPE----MDEERDECQGVCLEGDRFFVVSGYGTE 278 (446)
Q Consensus 208 ~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~-----~W~~~~~----~~~~r~~~~~~~~~~~~lyv~GG~~~~ 278 (446)
.+.++..+.||+++|+||... ...|.|..... .|..+.. .+..-+- +....-+|+||+++..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP-~~~llPdG~lFi~an~--- 189 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYP-FVHLLPDGNLFIFANR--- 189 (243)
T ss_pred ccccceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCc-eEEEcCCCCEEEEEcC---
Confidence 999999999999999999863 34455554221 2322322 1222221 3445668999999874
Q ss_pred CCCcccCcEEEEeCCCCce-EEccc
Q 013264 279 SQGRFKPDAECYDPKTGSW-SKFDH 302 (446)
Q Consensus 279 ~~~~~~~~v~~yd~~~~~W-~~~~~ 302 (446)
....||+.++++ ..++.
T Consensus 190 -------~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 190 -------GSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred -------CcEEEeCCCCeEEeeCCC
Confidence 457899999987 66774
No 45
>smart00612 Kelch Kelch domain.
Probab=98.57 E-value=1.1e-07 Score=63.42 Aligned_cols=46 Identities=28% Similarity=0.525 Sum_probs=40.4
Q ss_pred EEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEEC
Q 013264 167 KLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVG 216 (446)
Q Consensus 167 ~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~ 216 (446)
+||++||.... ...+++++||| .+++|+.+++|+.+|..+++++++
T Consensus 1 ~iyv~GG~~~~--~~~~~v~~yd~--~~~~W~~~~~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGG--QRLKSVEVYDP--ETNKWTPLPSMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCCC--ceeeeEEEECC--CCCeEccCCCCCCccccceEEEeC
Confidence 48999998652 35789999999 999999999999999999988876
No 46
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.56 E-value=3e-08 Score=64.26 Aligned_cols=39 Identities=46% Similarity=0.704 Sum_probs=37.1
Q ss_pred ChHHHHHHHhcccCccchhhHHhcccchhhhcCChHHHH
Q 013264 20 LPDEIAMECLIRVPYKFHNDLKSVCQRWLNLISSHSFYR 58 (446)
Q Consensus 20 LPddl~~~iLarlP~~~~~~~r~VcK~w~~li~s~~f~~ 58 (446)
||+|++.+||++|+..++.++++|||+|+.++.++.|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988865
No 47
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.56 E-value=1.7e-08 Score=68.02 Aligned_cols=44 Identities=32% Similarity=0.456 Sum_probs=37.7
Q ss_pred CCCChHHHHHHHhcccCccchhhHHhcccchhhhcCChHHHHHH
Q 013264 17 IPGLPDEIAMECLIRVPYKFHNDLKSVCQRWLNLISSHSFYRER 60 (446)
Q Consensus 17 ~~~LPddl~~~iLarlP~~~~~~~r~VcK~w~~li~s~~f~~~r 60 (446)
|..||+|++.+||.+|+..++.+++.|||+|++++.++.++..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 56799999999999999999999999999999999999887654
No 48
>PLN02772 guanylate kinase
Probab=98.37 E-value=2.9e-06 Score=82.04 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=67.0
Q ss_pred CccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEc---cCCccCccceEEEEECCcEEEEEeccCCCC
Q 013264 154 PMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRV---KPMSVARSFFACAVVGASTVCVAGGHDGQK 230 (446)
Q Consensus 154 p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~---~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~ 230 (446)
|+.++.+++ +++++||+||.+.. ...++.+++||+ .+++|... ...|.+|.+|+++++++++|+|+++.....
T Consensus 24 ~~~~~tav~-igdk~yv~GG~~d~-~~~~~~v~i~D~--~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~ 99 (398)
T PLN02772 24 PKNRETSVT-IGDKTYVIGGNHEG-NTLSIGVQILDK--ITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD 99 (398)
T ss_pred CCCcceeEE-ECCEEEEEcccCCC-ccccceEEEEEC--CCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc
Confidence 666777766 89999999997653 225789999999 89999876 457899999999999878999998866543
Q ss_pred CCCCeEEEEECCCC
Q 013264 231 NALKSAEVYDVEAD 244 (446)
Q Consensus 231 ~~~~~~~~yd~~t~ 244 (446)
.++|.....|.
T Consensus 100 ---~~~w~l~~~t~ 110 (398)
T PLN02772 100 ---DSIWFLEVDTP 110 (398)
T ss_pred ---cceEEEEcCCH
Confidence 56777766553
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.36 E-value=2.2e-05 Score=71.59 Aligned_cols=166 Identities=16% Similarity=0.204 Sum_probs=105.2
Q ss_pred CeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCC----CceEEcccCCCCCCC
Q 013264 234 KSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKT----GSWSKFDHVWPFPSL 309 (446)
Q Consensus 234 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~----~~W~~~~~~~p~~~~ 309 (446)
....+||+.|++++.+.-..-.-.. .++..-+|++.+.||.... ...+..|++.+ ..|.+... .|.
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCS-gg~~L~dG~ll~tGG~~~G-----~~~ir~~~p~~~~~~~~w~e~~~----~m~ 115 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCS-GGAFLPDGRLLQTGGDNDG-----NKAIRIFTPCTSDGTCDWTESPN----DMQ 115 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCccc-CcCCCCCCCEEEeCCCCcc-----ccceEEEecCCCCCCCCceECcc----ccc
Confidence 4567899999999987643322222 2344568899999998542 24677888865 57988875 488
Q ss_pred CCCCceEEEEecCCCcccEEEEEcCCCCCCceeE-------eceEEeeccCCCCcCCCCCCCCeEEEeeccccCCCceEE
Q 013264 310 SPRGSTATITSYRLQQHQWLWFLGKEQQQNGEVV-------KGKIVSSIVPLPKSVTEGSSSPCVSVTTLHNSQQQQKVF 382 (446)
Q Consensus 310 ~~r~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~-------~W~~~~~~~~~p~~~~~~R~~~~~~~~~~~~~~~~~~l~ 382 (446)
.+|-+.+++.+.+ |+++|+||......|.. ....+..+...... ...-.++-+..+. +++||
T Consensus 116 ~~RWYpT~~~L~D----G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~-~~~nlYP~~~llP------dG~lF 184 (243)
T PF07250_consen 116 SGRWYPTATTLPD----GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDT-LPNNLYPFVHLLP------DGNLF 184 (243)
T ss_pred CCCccccceECCC----CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhcc-CccccCceEEEcC------CCCEE
Confidence 9999999999988 79999999985432210 01111111000000 0111233455555 58999
Q ss_pred EEeccCCCCCCCCCccccccccccCCcceEEEEEeccCCCcCe-ee-ecCCCCcccccccceeEeC
Q 013264 383 VMTGNGGRGCSSSSALSSFICNECEGEGAFIMERDMSNGNIKW-DH-VHLPVGFSGFPCSASFLLI 446 (446)
Q Consensus 383 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W-~~-~~~p~~~~~~~~~~~~~~~ 446 (446)
+++..... +| |.+++++ +. ..+|.+.+....+++.|.+
T Consensus 185 i~an~~s~-------------------------i~-d~~~n~v~~~lP~lPg~~R~YP~sgssvmL 224 (243)
T PF07250_consen 185 IFANRGSI-------------------------IY-DYKTNTVVRTLPDLPGGPRNYPASGSSVML 224 (243)
T ss_pred EEEcCCcE-------------------------EE-eCCCCeEEeeCCCCCCCceecCCCcceEEe
Confidence 99876322 26 9999988 34 3577776666666766653
No 50
>PLN02772 guanylate kinase
Probab=98.32 E-value=4.3e-06 Score=80.83 Aligned_cols=84 Identities=12% Similarity=0.141 Sum_probs=65.4
Q ss_pred cCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEec---CCCCccCCcceEEEEE-CCEEEEEeCCCCCCC
Q 013264 205 VARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRML---PEMDEERDECQGVCLE-GDRFFVVSGYGTESQ 280 (446)
Q Consensus 205 ~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~-~~~lyv~GG~~~~~~ 280 (446)
.++..+++++++ +++||+||.++.....+.+++||..|++|... ...|.+|.+ |+++++ +++|+|+++....
T Consensus 23 ~~~~~~tav~ig-dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G-hSa~v~~~~rilv~~~~~~~-- 98 (398)
T PLN02772 23 KPKNRETSVTIG-DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG-YSAVVLNKDRILVIKKGSAP-- 98 (398)
T ss_pred CCCCcceeEEEC-CEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCc-ceEEEECCceEEEEeCCCCC--
Confidence 478889999999 79999999877544678999999999999966 477889998 555555 7799999875442
Q ss_pred CcccCcEEEEeCCCC
Q 013264 281 GRFKPDAECYDPKTG 295 (446)
Q Consensus 281 ~~~~~~v~~yd~~~~ 295 (446)
-.++|.....|-
T Consensus 99 ---~~~~w~l~~~t~ 110 (398)
T PLN02772 99 ---DDSIWFLEVDTP 110 (398)
T ss_pred ---ccceEEEEcCCH
Confidence 246666666553
No 51
>PF13854 Kelch_5: Kelch motif
Probab=98.29 E-value=1.9e-06 Score=55.97 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=35.2
Q ss_pred CccCccceEEEEECCcEEEEEeccCC-CCCCCCeEEEEECCC
Q 013264 203 MSVARSFFACAVVGASTVCVAGGHDG-QKNALKSAEVYDVEA 243 (446)
Q Consensus 203 ~p~~r~~~~~~~~~d~~iyv~GG~~~-~~~~~~~~~~yd~~t 243 (446)
+|.+|..|++++++ ++||++||... ....++++++||..+
T Consensus 1 ~P~~R~~hs~~~~~-~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVG-NNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEEC-CEEEEEcCccCCCCCEECcEEEEECCC
Confidence 47899999999999 89999999984 555789999999876
No 52
>PF13854 Kelch_5: Kelch motif
Probab=98.15 E-value=6.4e-06 Score=53.45 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=34.6
Q ss_pred CCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCC
Q 013264 252 MDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTG 295 (446)
Q Consensus 252 ~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~ 295 (446)
+|.+|.. |++++.+++||++||... ......+++++||+.+.
T Consensus 1 ~P~~R~~-hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYG-HSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccc-eEEEEECCEEEEEcCccC-CCCCEECcEEEEECCCC
Confidence 4778987 888999999999999985 23357899999998763
No 53
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.86 E-value=0.003 Score=57.83 Aligned_cols=160 Identities=12% Similarity=0.111 Sum_probs=92.9
Q ss_pred eEEEEECCCCcEEecCCCCCCCC-ccceEEEEeeCC-----EEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCcc
Q 013264 132 GLTIFNASNGTWERIRPHVGRIP-MFCQCVAVPASR-----KLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSV 205 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p-~~~~~~~~~~~~-----~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~ 205 (446)
.+.++||.+++|..||+.+.+.. ...+......+. +|..+...... .....+.+|+. .+++|+.+...+.
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~Vys~--~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQVYTL--GSNSWRTIECSPP 90 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC--CCCccEEEEEe--CCCCccccccCCC
Confidence 47899999999999987652100 001111111222 45555432111 12347899999 8899999874332
Q ss_pred C-ccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEe-cCCCCccCC---cceEEEEECCEEEEEeCCCCCCC
Q 013264 206 A-RSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRM-LPEMDEERD---ECQGVCLEGDRFFVVSGYGTESQ 280 (446)
Q Consensus 206 ~-r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r~---~~~~~~~~~~~lyv~GG~~~~~~ 280 (446)
. ......+.++ |.||-+....... ....+..||..+++|+. ++ +|.... ....++..+|+|.++.......
T Consensus 91 ~~~~~~~~v~~~-G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~- 166 (230)
T TIGR01640 91 HHPLKSRGVCIN-GVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDTN- 166 (230)
T ss_pred CccccCCeEEEC-CEEEEEEEECCCC-CcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCCC-
Confidence 1 1112245566 8999987543211 11378999999999995 53 343221 1245677789999887643211
Q ss_pred CcccCcEEEEe-CCCCceEEccc
Q 013264 281 GRFKPDAECYD-PKTGSWSKFDH 302 (446)
Q Consensus 281 ~~~~~~v~~yd-~~~~~W~~~~~ 302 (446)
.-++++.+ -.+.+|++.-.
T Consensus 167 ---~~~IWvl~d~~~~~W~k~~~ 186 (230)
T TIGR01640 167 ---NFDLWVLNDAGKQEWSKLFT 186 (230)
T ss_pred ---cEEEEEECCCCCCceeEEEE
Confidence 12566664 34567997643
No 54
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.48 E-value=0.0074 Score=58.73 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=82.8
Q ss_pred eCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEEEeccCCCCCC----CCeEEEE
Q 013264 164 ASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNA----LKSAEVY 239 (446)
Q Consensus 164 ~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~----~~~~~~y 239 (446)
.+++|+.++.. ....+||+ .+..-..+|.|+.+.....++.++ ++||++......... ....|++
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt--~t~av~~~P~l~~pk~~pisv~VG-~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDT--DTRAVATGPRLHSPKRCPISVSVG-DKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEEC--CCCeEeccCCCCCCCcceEEEEeC-CeEEEeeccCccccccCccceeEEEe
Confidence 58999998653 24789999 889888889988887777778888 689999876533211 0155555
Q ss_pred --E--------CCCCcEEecCCCCccCCc------ceEEEEE-CCEEEEE-eCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 240 --D--------VEADEWRMLPEMDEERDE------CQGVCLE-GDRFFVV-SGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 240 --d--------~~t~~W~~~~~~~~~r~~------~~~~~~~-~~~lyv~-GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
+ ..+-.|+.+++.|..+.. ..+-+++ +..|+|. -+.. ...++||+++.+|+++.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeecc
Confidence 4 223378898877755443 2334555 6688883 3221 24799999999999996
Q ss_pred c
Q 013264 302 H 302 (446)
Q Consensus 302 ~ 302 (446)
.
T Consensus 216 d 216 (342)
T PF07893_consen 216 D 216 (342)
T ss_pred c
Confidence 4
No 55
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.23 E-value=0.013 Score=53.45 Aligned_cols=110 Identities=13% Similarity=0.175 Sum_probs=67.9
Q ss_pred EEEEeccCCCCCCCCeEEEEECCCCc--------E---EecCCCCccCCcceEEEEE--CC--EEEEEeCCCCC------
Q 013264 220 VCVAGGHDGQKNALKSAEVYDVEADE--------W---RMLPEMDEERDECQGVCLE--GD--RFFVVSGYGTE------ 278 (446)
Q Consensus 220 iyv~GG~~~~~~~~~~~~~yd~~t~~--------W---~~~~~~~~~r~~~~~~~~~--~~--~lyv~GG~~~~------ 278 (446)
-.+.||...+.+...++++....+.. . ..+.+.|.+|++ |++.++ .| ...+|||...-
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYG-Ht~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYG-HTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCccccc-ceEEEEEECCcEEEEEECCcccCCccccc
Confidence 33557777655556666666544322 1 133789999998 665443 22 46678886321
Q ss_pred -----CCCcccCcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC
Q 013264 279 -----SQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ 338 (446)
Q Consensus 279 -----~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~ 338 (446)
..-.....|+..|++-+..+.-.- | .+....++|.+.+-++ .+|++||+.-.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~l--p-El~dG~SFHvslar~D-----~VYilGGHsl~ 176 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTL--P-ELQDGQSFHVSLARND-----CVYILGGHSLE 176 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccc--h-hhcCCeEEEEEEecCc-----eEEEEccEEcc
Confidence 111234467888988887764431 1 3556677887777776 99999998654
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00024 Score=65.34 Aligned_cols=41 Identities=29% Similarity=0.431 Sum_probs=38.0
Q ss_pred CCCChHHHHHHHhcccCccchhhHHhcccchhhhcCChHHH
Q 013264 17 IPGLPDEIAMECLIRVPYKFHNDLKSVCQRWLNLISSHSFY 57 (446)
Q Consensus 17 ~~~LPddl~~~iLarlP~~~~~~~r~VcK~w~~li~s~~f~ 57 (446)
|-.|||||++.||+.||.+.+.++..|||||+++-+...++
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 77899999999999999999999999999999998776655
No 57
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.01 E-value=0.041 Score=50.38 Aligned_cols=109 Identities=20% Similarity=0.284 Sum_probs=69.1
Q ss_pred EEEEE-eCcCCCCCCccCeEEEEeCcCCC-Cc-----EE---EccCCccCccceEEEEECC---cEEEEEeccCCC----
Q 013264 167 KLLLI-GGWDPITLEPVPDVYVLDMVNNS-SR-----WR---RVKPMSVARSFFACAVVGA---STVCVAGGHDGQ---- 229 (446)
Q Consensus 167 ~lyv~-GG~~~~~~~~~~~v~~~d~~~~t-~~-----W~---~~~~~p~~r~~~~~~~~~d---~~iyv~GG~~~~---- 229 (446)
..|++ ||...++ +.++.+|+....+.. |+ .. .+...|.+|++|++.++.. .-..+|||..-.
T Consensus 39 ~~YlIHGGrTPNN-ElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q 117 (337)
T PF03089_consen 39 EQYLIHGGRTPNN-ELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ 117 (337)
T ss_pred eeEEecCCcCCCc-ccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc
Confidence 34544 6665543 356777776652111 11 11 1367899999999887762 347788886421
Q ss_pred ---------CCCCCeEEEEECCCCcEE--ecCCCCccCCcceEEEEECCEEEEEeCCCC
Q 013264 230 ---------KNALKSAEVYDVEADEWR--MLPEMDEERDECQGVCLEGDRFFVVSGYGT 277 (446)
Q Consensus 230 ---------~~~~~~~~~yd~~t~~W~--~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~ 277 (446)
-+....|+..|++.+-.+ .++.+.....+ |.+..-++.+|++||..-
T Consensus 118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SF-Hvslar~D~VYilGGHsl 175 (337)
T PF03089_consen 118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSF-HVSLARNDCVYILGGHSL 175 (337)
T ss_pred cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEE-EEEEecCceEEEEccEEc
Confidence 123466777788777665 44566666665 677777999999999743
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.98 E-value=0.065 Score=52.14 Aligned_cols=115 Identities=20% Similarity=0.261 Sum_probs=70.9
Q ss_pred EEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCC-----ccCeEEEEeC------cCCCCcEEEcc
Q 013264 133 LTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLE-----PVPDVYVLDM------VNNSSRWRRVK 201 (446)
Q Consensus 133 ~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~-----~~~~v~~~d~------~~~t~~W~~~~ 201 (446)
..+||..+..=..+|.+.. |...- +++.++++||++......... ..-++..|++ ....-.|+.+|
T Consensus 88 t~vyDt~t~av~~~P~l~~--pk~~p-isv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP 164 (342)
T PF07893_consen 88 TLVYDTDTRAVATGPRLHS--PKRCP-ISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLP 164 (342)
T ss_pred eEEEECCCCeEeccCCCCC--CCcce-EEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCC
Confidence 6789999998888888763 44433 444579999999876322110 0112334442 11445789998
Q ss_pred CCccCccc-------eEEEEECCcEEEE-EeccCCCCCCCCeEEEEECCCCcEEecCCCCccC
Q 013264 202 PMSVARSF-------FACAVVGASTVCV-AGGHDGQKNALKSAEVYDVEADEWRMLPEMDEER 256 (446)
Q Consensus 202 ~~p~~r~~-------~~~~~~~d~~iyv-~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 256 (446)
+.|..+.. .+-+++++..|+| +-|.. .-++.||..+.+|+++.+-..|-
T Consensus 165 ~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 165 PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred CCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeeccceecCc
Confidence 87755432 2334443367887 33321 35899999999999998644443
No 59
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.84 E-value=0.00049 Score=66.52 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=34.7
Q ss_pred CCCCChHHHHHHHhcccC-ccchhhHHhcccchhhhcCC
Q 013264 16 LIPGLPDEIAMECLIRVP-YKFHNDLKSVCQRWLNLISS 53 (446)
Q Consensus 16 ~~~~LPddl~~~iLarlP-~~~~~~~r~VcK~w~~li~s 53 (446)
.|..||+||++.|..||| ..++.++|+|||.||+.+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 489999999999999994 67999999999999998863
No 60
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.35 E-value=0.0017 Score=60.09 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=40.0
Q ss_pred CCCChHHHHHHHhcccC-----ccchhhHHhcccchhhhcCChHHHHHHHH
Q 013264 17 IPGLPDEIAMECLIRVP-----YKFHNDLKSVCQRWLNLISSHSFYRERIR 62 (446)
Q Consensus 17 ~~~LPddl~~~iLarlP-----~~~~~~~r~VcK~w~~li~s~~f~~~r~~ 62 (446)
|.-|||||+.+||.++= ..++-++.+|||.|+-.++.|+|+++-..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 35799999999999763 58999999999999999999999877444
No 61
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.25 E-value=0.083 Score=49.59 Aligned_cols=109 Identities=17% Similarity=0.294 Sum_probs=70.0
Q ss_pred ccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCC-----Ccc
Q 013264 181 PVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEM-----DEE 255 (446)
Q Consensus 181 ~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~ 255 (446)
....+..||+ .+.+|..+..--..- -.++....++++|+.|-..........+-.||..+++|+.++.. |.+
T Consensus 14 ~C~~lC~yd~--~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 14 PCPGLCLYDT--DNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP 90 (281)
T ss_pred CCCEEEEEEC--CCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc
Confidence 4678999999 889999886542221 12333344478988886554432457789999999999988662 333
Q ss_pred CCcceEEEE---ECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEccc
Q 013264 256 RDECQGVCL---EGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDH 302 (446)
Q Consensus 256 r~~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 302 (446)
. .+.++ ....+++.|..... ...+..| +..+|..+..
T Consensus 91 v---~a~~~~~~d~~~~~~aG~~~~g-----~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 91 V---TALTFISNDGSNFWVAGRSANG-----STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred E---EEEEeeccCCceEEEeceecCC-----CceEEEE--cCCceEeccc
Confidence 2 22222 23478877775221 3356777 5568999874
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.81 E-value=0.15 Score=47.80 Aligned_cols=109 Identities=15% Similarity=0.252 Sum_probs=63.8
Q ss_pred EEEEeccCCCCC-CCCeEEEEECCCCcEEecCCCCccCCcceEEEEE-CCEEEEEeCCCCCCCCcccCcEEEEeCCCCce
Q 013264 220 VCVAGGHDGQKN-ALKSAEVYDVEADEWRMLPEMDEERDECQGVCLE-GDRFFVVSGYGTESQGRFKPDAECYDPKTGSW 297 (446)
Q Consensus 220 iyv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W 297 (446)
|||-|-+...+. ....+..||+.+.+|..+..--... ..++... +++||+.|-..-.. .....+-.||.++.+|
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~--V~~l~~~~~~~Llv~G~ft~~~--~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT--VTDLQWASNNQLLVGGNFTLNG--TNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE--EEEEEEecCCEEEEEEeeEECC--CCceeEEEEecCCCee
Confidence 355555544332 3678999999999999886532111 1344443 77888887653322 1245789999999999
Q ss_pred EEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCC
Q 013264 298 SKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQ 336 (446)
Q Consensus 298 ~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~ 336 (446)
+.+........|.+-........+. ..+++.|...
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~----~~~~~aG~~~ 111 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDG----SNFWVAGRSA 111 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCC----ceEEEeceec
Confidence 9887421111233321222111122 4788888763
No 63
>PRK13684 Ycf48-like protein; Provisional
Probab=95.52 E-value=2 Score=41.70 Aligned_cols=196 Identities=14% Similarity=0.144 Sum_probs=93.2
Q ss_pred CcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEE
Q 013264 141 GTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTV 220 (446)
Q Consensus 141 ~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~i 220 (446)
.+|+.+..... .+.......+.-++.+|+.|.. ..+++-+- .-.+|+.+.... .-..+.+....++.
T Consensus 119 ~tW~~~~~~~~-~~~~~~~i~~~~~~~~~~~g~~--------G~i~~S~D--gG~tW~~~~~~~-~g~~~~i~~~~~g~- 185 (334)
T PRK13684 119 KNWTRIPLSEK-LPGSPYLITALGPGTAEMATNV--------GAIYRTTD--GGKNWEALVEDA-AGVVRNLRRSPDGK- 185 (334)
T ss_pred CCCeEccCCcC-CCCCceEEEEECCCcceeeecc--------ceEEEECC--CCCCceeCcCCC-cceEEEEEECCCCe-
Confidence 48988753211 1222222333234446655432 23555554 568999886533 22344555555444
Q ss_pred EEEeccCCCCCCCCeEEE-EECCCCcEEecCCCCccCCcceEEEE-ECCEEEEEeCCCCCCCCcccCcEEEEe-C-CCCc
Q 013264 221 CVAGGHDGQKNALKSAEV-YDVEADEWRMLPEMDEERDECQGVCL-EGDRFFVVSGYGTESQGRFKPDAECYD-P-KTGS 296 (446)
Q Consensus 221 yv~GG~~~~~~~~~~~~~-yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~v~~yd-~-~~~~ 296 (446)
|++.|..+ .++. .|....+|+.+.. +..+.- .+++. .++.++++|... ...+. . .-.+
T Consensus 186 ~v~~g~~G------~i~~s~~~gg~tW~~~~~-~~~~~l-~~i~~~~~g~~~~vg~~G----------~~~~~s~d~G~s 247 (334)
T PRK13684 186 YVAVSSRG------NFYSTWEPGQTAWTPHQR-NSSRRL-QSMGFQPDGNLWMLARGG----------QIRFNDPDDLES 247 (334)
T ss_pred EEEEeCCc------eEEEEcCCCCCeEEEeeC-CCcccc-eeeeEcCCCCEEEEecCC----------EEEEccCCCCCc
Confidence 44444322 2222 2444568998854 333332 34433 467888886531 23342 2 2348
Q ss_pred eEEcccCCCCCCCCC-CCceEEEEecCCCcccEEEEEcCCCCC---CceeEeceEEeeccCCCCcCCCCCCCCeEEEeec
Q 013264 297 WSKFDHVWPFPSLSP-RGSTATITSYRLQQHQWLWFLGKEQQQ---NGEVVKGKIVSSIVPLPKSVTEGSSSPCVSVTTL 372 (446)
Q Consensus 297 W~~~~~~~p~~~~~~-r~~~~~~~~~~~~~~~~lyv~GG~~~~---~~~~~~W~~~~~~~~~p~~~~~~R~~~~~~~~~~ 372 (446)
|+.+.. +.... ...++.+...+ +.+|++|..... ...-.+|+.......+|. ....++..+
T Consensus 248 W~~~~~----~~~~~~~~l~~v~~~~~----~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~------~~~~~~~~~- 312 (334)
T PRK13684 248 WSKPII----PEITNGYGYLDLAYRTP----GEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPS------NFYKIVFLD- 312 (334)
T ss_pred cccccC----CccccccceeeEEEcCC----CCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCc------ceEEEEEeC-
Confidence 997652 21111 22333333333 478888764322 223346776542112221 223344444
Q ss_pred cccCCCceEEEEecc
Q 013264 373 HNSQQQQKVFVMTGN 387 (446)
Q Consensus 373 ~~~~~~~~l~v~GG~ 387 (446)
++++|++|..
T Consensus 313 -----~~~~~~~G~~ 322 (334)
T PRK13684 313 -----PEKGFVLGQR 322 (334)
T ss_pred -----CCceEEECCC
Confidence 3788887765
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.25 E-value=0.0092 Score=55.80 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=39.5
Q ss_pred CCCCCh----HHHHHHHhcccCccchhhHHhcccchhhhcCChHHHHH
Q 013264 16 LIPGLP----DEIAMECLIRVPYKFHNDLKSVCQRWLNLISSHSFYRE 59 (446)
Q Consensus 16 ~~~~LP----ddl~~~iLarlP~~~~~~~r~VcK~w~~li~s~~f~~~ 59 (446)
.+..|| |+|+++||+.|--.++..+.+|||+|+++++.+-+++.
T Consensus 74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 356789 99999999999999999999999999999999876644
No 65
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.05 E-value=4.1 Score=40.49 Aligned_cols=199 Identities=11% Similarity=0.081 Sum_probs=93.6
Q ss_pred CCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCc------c--------
Q 013264 140 NGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMS------V-------- 205 (446)
Q Consensus 140 ~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p------~-------- 205 (446)
-++|+.++..+. .|.......+.-++.++++|.. ..+++-+- .-.+|+.+...+ .
T Consensus 165 G~tW~~~~~~~~-~p~~~~~i~~~~~~~~~ivg~~--------G~v~~S~D--~G~tW~~~~~~t~~~~l~~~~~s~~~g 233 (398)
T PLN00033 165 GETWERIPLSPK-LPGEPVLIKATGPKSAEMVTDE--------GAIYVTSN--AGRNWKAAVEETVSATLNRTVSSGISG 233 (398)
T ss_pred CCCceECccccC-CCCCceEEEEECCCceEEEecc--------ceEEEECC--CCCCceEcccccccccccccccccccc
Confidence 368988765432 2222222333234557777632 23555555 567898872111 0
Q ss_pred ----CccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCC
Q 013264 206 ----ARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQG 281 (446)
Q Consensus 206 ----~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~ 281 (446)
.-..+++....|+.++++|-.. +-....|.....|+.+......+.. ......++.++++|...
T Consensus 234 ~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~~~~~~~~l~-~v~~~~dg~l~l~g~~G----- 301 (398)
T PLN00033 234 ASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPHNRASARRIQ-NMGWRADGGLWLLTRGG----- 301 (398)
T ss_pred cceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEecCCCcccee-eeeEcCCCCEEEEeCCc-----
Confidence 0112233334445666665432 1122234334458977643333321 22234567888876532
Q ss_pred cccCcEEEEeCCCC-----ceEEcccCCCCCCCCCCC-ceEEEEecCCCcccEEEEEcCCCCC---CceeEeceEEeecc
Q 013264 282 RFKPDAECYDPKTG-----SWSKFDHVWPFPSLSPRG-STATITSYRLQQHQWLWFLGKEQQQ---NGEVVKGKIVSSIV 352 (446)
Q Consensus 282 ~~~~~v~~yd~~~~-----~W~~~~~~~p~~~~~~r~-~~~~~~~~~~~~~~~lyv~GG~~~~---~~~~~~W~~~~~~~ 352 (446)
.+..-+-.-. +|.++. .+..+. ..+++..++ +.+++.|..... ...-.+|+......
T Consensus 302 ----~l~~S~d~G~~~~~~~f~~~~------~~~~~~~l~~v~~~~d----~~~~a~G~~G~v~~s~D~G~tW~~~~~~~ 367 (398)
T PLN00033 302 ----GLYVSKGTGLTEEDFDFEEAD------IKSRGFGILDVGYRSK----KEAWAAGGSGILLRSTDGGKSWKRDKGAD 367 (398)
T ss_pred ----eEEEecCCCCcccccceeecc------cCCCCcceEEEEEcCC----CcEEEEECCCcEEEeCCCCcceeEccccC
Confidence 2333333333 455544 222333 333334444 578888765322 23445677764322
Q ss_pred CCCCcCCCCCCCCeEEEeeccccCCCceEEEEecc
Q 013264 353 PLPKSVTEGSSSPCVSVTTLHNSQQQQKVFVMTGN 387 (446)
Q Consensus 353 ~~p~~~~~~R~~~~~~~~~~~~~~~~~~l~v~GG~ 387 (446)
.++..+. .+...+ +++.||+|-.
T Consensus 368 ~~~~~ly------~v~f~~------~~~g~~~G~~ 390 (398)
T PLN00033 368 NIAANLY------SVKFFD------DKKGFVLGND 390 (398)
T ss_pred CCCccee------EEEEcC------CCceEEEeCC
Confidence 3332222 233333 4788888743
No 66
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.49 E-value=5.6 Score=39.48 Aligned_cols=136 Identities=18% Similarity=0.271 Sum_probs=75.2
Q ss_pred eEEEEECCCCc--EEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccC---
Q 013264 132 GLTIFNASNGT--WERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVA--- 206 (446)
Q Consensus 132 ~~~~ydp~~~~--W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~--- 206 (446)
.+.++|+.+.+ |+.-...+. ......++.+..++.+|+..+ ...++.+|+.+....|+.--..+..
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~-~~~~~~~sP~v~~~~v~~~~~--------~g~v~a~d~~~G~~~W~~~~~~~~~~~~ 241 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPS-LTLRGESAPATAFGGAIVGGD--------NGRVSAVLMEQGQLIWQQRISQPTGATE 241 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCc-ccccCCCCCEEECCEEEEEcC--------CCEEEEEEccCChhhheeccccCCCccc
Confidence 47888987775 776433221 000111122224667666433 2357888883333458653221211
Q ss_pred --c---cceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCc--EEecCCCCccCCcceEEEEECCEEEEEeCCCCCC
Q 013264 207 --R---SFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADE--WRMLPEMDEERDECQGVCLEGDRFFVVSGYGTES 279 (446)
Q Consensus 207 --r---~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~ 279 (446)
| ...+-++.+ +.+|+.+.. ..+..+|..+++ |+.-- ... ...++.+++||+....
T Consensus 242 ~~~~~~~~~sP~v~~-~~vy~~~~~-------g~l~ald~~tG~~~W~~~~--~~~----~~~~~~~~~vy~~~~~---- 303 (394)
T PRK11138 242 IDRLVDVDTTPVVVG-GVVYALAYN-------GNLVALDLRSGQIVWKREY--GSV----NDFAVDGGRIYLVDQN---- 303 (394)
T ss_pred hhcccccCCCcEEEC-CEEEEEEcC-------CeEEEEECCCCCEEEeecC--CCc----cCcEEECCEEEEEcCC----
Confidence 1 112223455 789986531 467899998764 87531 111 2346678999997532
Q ss_pred CCcccCcEEEEeCCCCc--eEE
Q 013264 280 QGRFKPDAECYDPKTGS--WSK 299 (446)
Q Consensus 280 ~~~~~~~v~~yd~~~~~--W~~ 299 (446)
..++++|+++++ |+.
T Consensus 304 -----g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 304 -----DRVYALDTRGGVELWSQ 320 (394)
T ss_pred -----CeEEEEECCCCcEEEcc
Confidence 369999998874 864
No 67
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.47 E-value=2.6 Score=41.92 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=66.6
Q ss_pred EeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCc--------cCccceEEEEECCcEEEEEeccCCCCCCC
Q 013264 162 VPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMS--------VARSFFACAVVGASTVCVAGGHDGQKNAL 233 (446)
Q Consensus 162 ~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p--------~~r~~~~~~~~~d~~iyv~GG~~~~~~~~ 233 (446)
+..++.||+.+. ...++.+|..+.+..|+.-..-. .++...+.++.+ ++||+.+. .
T Consensus 66 vv~~~~vy~~~~--------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~v~v~~~-------~ 129 (394)
T PRK11138 66 AVAYNKVYAADR--------AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAG-GKVYIGSE-------K 129 (394)
T ss_pred EEECCEEEEECC--------CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEEC-CEEEEEcC-------C
Confidence 346899999754 23588899833455687532110 112222334555 79987532 1
Q ss_pred CeEEEEECCCC--cEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCc--eEEcc
Q 013264 234 KSAEVYDVEAD--EWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGS--WSKFD 301 (446)
Q Consensus 234 ~~~~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~ 301 (446)
..+..+|.+|+ .|+.-.+ .... .+-++.++.+|+..+. ..+++||+++++ |+.-.
T Consensus 130 g~l~ald~~tG~~~W~~~~~--~~~~--ssP~v~~~~v~v~~~~---------g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVA--GEAL--SRPVVSDGLVLVHTSN---------GMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CEEEEEECCCCCCcccccCC--Ccee--cCCEEECCEEEEECCC---------CEEEEEEccCCCEeeeecC
Confidence 47899998776 5875432 1111 2335668888885431 369999998885 87643
No 68
>PRK13684 Ycf48-like protein; Provisional
Probab=94.36 E-value=5.4 Score=38.72 Aligned_cols=135 Identities=14% Similarity=0.176 Sum_probs=68.3
Q ss_pred eCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCC-ccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECC
Q 013264 164 ASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPM-SVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVE 242 (446)
Q Consensus 164 ~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~-p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~ 242 (446)
.++..|+.|.. ..++.=+- .-.+|+++... ..+...+.+..++++.+|+.|.. ..+++=+=.
T Consensus 98 ~~~~~~~~G~~--------g~i~~S~D--gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~Dg 160 (334)
T PRK13684 98 KGDEGWIVGQP--------SLLLHTTD--GGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDG 160 (334)
T ss_pred cCCcEEEeCCC--------ceEEEECC--CCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCC
Confidence 35556666421 22444333 45799988532 22223344555554567766542 223333334
Q ss_pred CCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEE-EeCCCCceEEcccCCCCCCCCCCCceEEEEec
Q 013264 243 ADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAEC-YDPKTGSWSKFDHVWPFPSLSPRGSTATITSY 321 (446)
Q Consensus 243 t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~-yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~ 321 (446)
-.+|+.+...... .. ..+....+..|+..|..+ .++. .|....+|+.+.. +..+...+++...
T Consensus 161 G~tW~~~~~~~~g-~~-~~i~~~~~g~~v~~g~~G--------~i~~s~~~gg~tW~~~~~------~~~~~l~~i~~~~ 224 (334)
T PRK13684 161 GKNWEALVEDAAG-VV-RNLRRSPDGKYVAVSSRG--------NFYSTWEPGQTAWTPHQR------NSSRRLQSMGFQP 224 (334)
T ss_pred CCCceeCcCCCcc-eE-EEEEECCCCeEEEEeCCc--------eEEEEcCCCCCeEEEeeC------CCcccceeeeEcC
Confidence 5699988643322 11 344444444455444322 2232 3455568998862 3444555555544
Q ss_pred CCCcccEEEEEcCC
Q 013264 322 RLQQHQWLWFLGKE 335 (446)
Q Consensus 322 ~~~~~~~lyv~GG~ 335 (446)
+ ++++++|..
T Consensus 225 ~----g~~~~vg~~ 234 (334)
T PRK13684 225 D----GNLWMLARG 234 (334)
T ss_pred C----CCEEEEecC
Confidence 4 478887653
No 69
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.10 E-value=5.6 Score=37.89 Aligned_cols=200 Identities=13% Similarity=0.146 Sum_probs=88.8
Q ss_pred CCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCc
Q 013264 139 SNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGAS 218 (446)
Q Consensus 139 ~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~ 218 (446)
.-.+|++++.... +|.......+.-++.++++|.. ..+++-.- .-.+|+.+..-.. -.........|+
T Consensus 89 gG~tW~~v~l~~~-lpgs~~~i~~l~~~~~~l~~~~--------G~iy~T~D--gG~tW~~~~~~~~-gs~~~~~r~~dG 156 (302)
T PF14870_consen 89 GGKTWERVPLSSK-LPGSPFGITALGDGSAELAGDR--------GAIYRTTD--GGKTWQAVVSETS-GSINDITRSSDG 156 (302)
T ss_dssp TTSS-EE----TT--SS-EEEEEEEETTEEEEEETT----------EEEESS--TTSSEEEEE-S-----EEEEEE-TTS
T ss_pred CCCCcEEeecCCC-CCCCeeEEEEcCCCcEEEEcCC--------CcEEEeCC--CCCCeeEcccCCc-ceeEeEEECCCC
Confidence 3457999764321 3433344444456777777642 23665555 6789998754222 222333444567
Q ss_pred EEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEE-EECCEEEEEeCCCCCCCCcccCcEEEEe--CCCC
Q 013264 219 TVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVC-LEGDRFFVVSGYGTESQGRFKPDAECYD--PKTG 295 (446)
Q Consensus 219 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~v~~yd--~~~~ 295 (446)
++++++... +-....|+....|+........|- .++. .-++.|++.. ..+ .+..=| -...
T Consensus 157 ~~vavs~~G------~~~~s~~~G~~~w~~~~r~~~~ri--q~~gf~~~~~lw~~~-~Gg--------~~~~s~~~~~~~ 219 (302)
T PF14870_consen 157 RYVAVSSRG------NFYSSWDPGQTTWQPHNRNSSRRI--QSMGFSPDGNLWMLA-RGG--------QIQFSDDPDDGE 219 (302)
T ss_dssp -EEEEETTS------SEEEEE-TT-SS-EEEE--SSS-E--EEEEE-TTS-EEEEE-TTT--------EEEEEE-TTEEE
T ss_pred cEEEEECcc------cEEEEecCCCccceEEccCcccee--hhceecCCCCEEEEe-CCc--------EEEEccCCCCcc
Confidence 766665432 233466888888997765444443 3443 3456787764 221 233333 3455
Q ss_pred ceEEcccCCCCCCCCCCCc-eEEEEecCCCcccEEEEEcCCCCC---CceeEeceEEeeccCCCCcCCCCCCCCeEEEee
Q 013264 296 SWSKFDHVWPFPSLSPRGS-TATITSYRLQQHQWLWFLGKEQQQ---NGEVVKGKIVSSIVPLPKSVTEGSSSPCVSVTT 371 (446)
Q Consensus 296 ~W~~~~~~~p~~~~~~r~~-~~~~~~~~~~~~~~lyv~GG~~~~---~~~~~~W~~~~~~~~~p~~~~~~R~~~~~~~~~ 371 (446)
+|.+... +......+ ..++...+ +.+++.||.... ...-.+|++.....++|..+. .++.++
T Consensus 220 ~w~~~~~----~~~~~~~~~ld~a~~~~----~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~------~i~f~~ 285 (302)
T PF14870_consen 220 TWSEPII----PIKTNGYGILDLAYRPP----NEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLY------RIVFVN 285 (302)
T ss_dssp EE---B-----TTSS--S-EEEEEESSS----S-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---------EEEEEE
T ss_pred ccccccC----CcccCceeeEEEEecCC----CCEEEEeCCccEEEeCCCCccceECccccCCCCceE------EEEEcC
Confidence 7887432 22223333 33344433 689999887543 234456877755434443222 245545
Q ss_pred ccccCCCceEEEEecc
Q 013264 372 LHNSQQQQKVFVMTGN 387 (446)
Q Consensus 372 ~~~~~~~~~l~v~GG~ 387 (446)
.++-||+|-.
T Consensus 286 ------~~~gf~lG~~ 295 (302)
T PF14870_consen 286 ------PDKGFVLGQD 295 (302)
T ss_dssp ------TTEEEEE-ST
T ss_pred ------CCceEEECCC
Confidence 4789999855
No 70
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.98 E-value=5.9 Score=37.73 Aligned_cols=156 Identities=16% Similarity=0.215 Sum_probs=70.4
Q ss_pred CcEEecCCCCCCCC-ccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEcc-CCccCccceEEEEECCc
Q 013264 141 GTWERIRPHVGRIP-MFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVK-PMSVARSFFACAVVGAS 218 (446)
Q Consensus 141 ~~W~~l~~~~~~~p-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~-~~p~~r~~~~~~~~~d~ 218 (446)
.+|..+..-.. .+ .....++...++..|++|.. .-++.-.- .-.+|++++ +.+.+-..+.+..++++
T Consensus 47 ~tW~~~~~~~~-~~~~~~l~~I~f~~~~g~ivG~~--------g~ll~T~D--gG~tW~~v~l~~~lpgs~~~i~~l~~~ 115 (302)
T PF14870_consen 47 KTWQPVSLDLD-NPFDYHLNSISFDGNEGWIVGEP--------GLLLHTTD--GGKTWERVPLSSKLPGSPFGITALGDG 115 (302)
T ss_dssp SS-EE-----S------EEEEEEEETTEEEEEEET--------TEEEEESS--TTSS-EE----TT-SS-EEEEEEEETT
T ss_pred ccccccccCCC-ccceeeEEEEEecCCceEEEcCC--------ceEEEecC--CCCCcEEeecCCCCCCCeeEEEEcCCC
Confidence 46887653321 12 12222233357889988742 12444444 568999986 23444555666676767
Q ss_pred EEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceE
Q 013264 219 TVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWS 298 (446)
Q Consensus 219 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 298 (446)
.++++|.. ..+++=.=.-.+|+.+..-...-.. .....-++++++++.. +. -....|+....|+
T Consensus 116 ~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~gs~~-~~~r~~dG~~vavs~~-G~-------~~~s~~~G~~~w~ 179 (302)
T PF14870_consen 116 SAELAGDR-------GAIYRTTDGGKTWQAVVSETSGSIN-DITRSSDGRYVAVSSR-GN-------FYSSWDPGQTTWQ 179 (302)
T ss_dssp EEEEEETT---------EEEESSTTSSEEEEE-S----EE-EEEE-TTS-EEEEETT-SS-------EEEEE-TT-SS-E
T ss_pred cEEEEcCC-------CcEEEeCCCCCCeeEcccCCcceeE-eEEECCCCcEEEEECc-cc-------EEEEecCCCccce
Confidence 88887643 2333333345589987542222111 2223345565555543 21 3457899999999
Q ss_pred EcccCCCCCCCCCCCceEEEEecCCCcccEEEEEc
Q 013264 299 KFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLG 333 (446)
Q Consensus 299 ~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~G 333 (446)
... .+..|.--++....+ +.|+++.
T Consensus 180 ~~~------r~~~~riq~~gf~~~----~~lw~~~ 204 (302)
T PF14870_consen 180 PHN------RNSSRRIQSMGFSPD----GNLWMLA 204 (302)
T ss_dssp EEE--------SSS-EEEEEE-TT----S-EEEEE
T ss_pred EEc------cCccceehhceecCC----CCEEEEe
Confidence 887 334555555554444 5788775
No 71
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.64 E-value=7.5 Score=35.07 Aligned_cols=137 Identities=24% Similarity=0.341 Sum_probs=79.3
Q ss_pred eEEEEECCCCc--EEecCCCCCCCCccceEE--EEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCc
Q 013264 132 GLTIFNASNGT--WERIRPHVGRIPMFCQCV--AVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVAR 207 (446)
Q Consensus 132 ~~~~ydp~~~~--W~~l~~~~~~~p~~~~~~--~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r 207 (446)
.+.++|+.+++ |+.-. . +...+.. .+..++.+|+..+ ...++.+|+.+.+..|+.-. +.+-
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~---~~~~~~~~~~~~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~--~~~~ 68 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--G---PGIGGPVATAVPDGGRVYVASG--------DGNLYALDAKTGKVLWRFDL--PGPI 68 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--S---SSCSSEEETEEEETTEEEEEET--------TSEEEEEETTTSEEEEEEEC--SSCG
T ss_pred EEEEEECCCCCEEEEEEC--C---CCCCCccceEEEeCCEEEEEcC--------CCEEEEEECCCCCEEEEeec--cccc
Confidence 36788886664 76622 1 1111222 3336889998843 44799999833344576554 2221
Q ss_pred cceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCC--cEE-ecCCCCccC-CcceEEEEECCEEEEEeCCCCCCCCcc
Q 013264 208 SFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEAD--EWR-MLPEMDEER-DECQGVCLEGDRFFVVSGYGTESQGRF 283 (446)
Q Consensus 208 ~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~-~~~~~~~~r-~~~~~~~~~~~~lyv~GG~~~~~~~~~ 283 (446)
... ....+ +.||+..+. +.+..+|..+. .|+ .....+... ......++.++.+|+...
T Consensus 69 ~~~-~~~~~-~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 130 (238)
T PF13360_consen 69 SGA-PVVDG-GRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--------- 130 (238)
T ss_dssp GSG-EEEET-TEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET---------
T ss_pred cce-eeecc-cccccccce-------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec---------
Confidence 111 35555 799888621 38899997776 598 443322221 112345566778887653
Q ss_pred cCcEEEEeCCCCc--eEEcc
Q 013264 284 KPDAECYDPKTGS--WSKFD 301 (446)
Q Consensus 284 ~~~v~~yd~~~~~--W~~~~ 301 (446)
...+.++|+++++ |+.-.
T Consensus 131 ~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 131 SGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp CSEEEEEETTTTEEEEEEES
T ss_pred cCcEEEEecCCCcEEEEeec
Confidence 2379999999884 76643
No 72
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.36 E-value=11 Score=38.29 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=78.2
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEe-eCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVP-ASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~ 210 (446)
.++.+|..+++-..+...+. ........ .+..|++....++ ..+++++|. .+.+.+++..-...-..
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g----~~~~~~wSPDG~~La~~~~~~g-----~~~Iy~~dl--~tg~~~~lt~~~~~~~~- 310 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPG----INGAPRFSPDGKKLALVLSKDG-----QPEIYVVDI--ATKALTRITRHRAIDTE- 310 (448)
T ss_pred EEEEEECCCCCeEEecCCCC----CcCCeeECCCCCEEEEEEeCCC-----CeEEEEEEC--CCCCeEECccCCCCccc-
Confidence 46777887777666655442 11112222 3444655543322 347999999 78888877543211111
Q ss_pred EEEEECC-cEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEE
Q 013264 211 ACAVVGA-STVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAEC 289 (446)
Q Consensus 211 ~~~~~~d-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~ 289 (446)
.....| .+|++.....+ ...++++|..+++++.+..-. .........-.++.||+.+...+ ...++.
T Consensus 311 -p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g------~~~I~~ 378 (448)
T PRK04792 311 -PSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNG------KFNIAR 378 (448)
T ss_pred -eEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCC------ceEEEE
Confidence 122223 35555443222 258899999999998874211 11111122222345555443221 236889
Q ss_pred EeCCCCceEEcc
Q 013264 290 YDPKTGSWSKFD 301 (446)
Q Consensus 290 yd~~~~~W~~~~ 301 (446)
+|+.++..+.+.
T Consensus 379 ~dl~~g~~~~lt 390 (448)
T PRK04792 379 QDLETGAMQVLT 390 (448)
T ss_pred EECCCCCeEEcc
Confidence 999998887765
No 73
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.26 E-value=9 Score=35.07 Aligned_cols=135 Identities=13% Similarity=0.158 Sum_probs=77.0
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEe-eCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCcc---Cc
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVP-ASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSV---AR 207 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~---~r 207 (446)
.++.+|+.+++-..+.... ...+++. .++.+|+.... .+.++|+ .+.+++.+...+. +.
T Consensus 23 ~i~~~~~~~~~~~~~~~~~------~~G~~~~~~~g~l~v~~~~---------~~~~~d~--~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDLPG------PNGMAFDRPDGRLYVADSG---------GIAVVDP--DTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp EEEEEETTTTEEEEEESSS------EEEEEEECTTSEEEEEETT---------CEEEEET--TTTEEEEEEEEETTCSCT
T ss_pred EEEEEECCCCeEEEEecCC------CceEEEEccCCEEEEEEcC---------ceEEEec--CCCcEEEEeeccCCCccc
Confidence 5788999888765433222 1334443 47888887542 3466799 8899988866531 22
Q ss_pred cce-EEEEECCcEEEEEeccCCCCCCC--CeEEEEECCCCcEEecC-CCCccCCcceEEEEE--CCEEEEEeCCCCCCCC
Q 013264 208 SFF-ACAVVGASTVCVAGGHDGQKNAL--KSAEVYDVEADEWRMLP-EMDEERDECQGVCLE--GDRFFVVSGYGTESQG 281 (446)
Q Consensus 208 ~~~-~~~~~~d~~iyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~~~--~~~lyv~GG~~~~~~~ 281 (446)
... -+++-.+|.||+.--........ ..++++++. .+.+.+. .+..+ .++++. +..||+.--.
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p----NGi~~s~dg~~lyv~ds~------ 154 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP----NGIAFSPDGKTLYVADSF------ 154 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE----EEEEEETTSSEEEEEETT------
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc----cceEECCcchheeecccc------
Confidence 222 23444458898864332221112 578999998 6665553 22222 344444 3468886432
Q ss_pred cccCcEEEEeCCCCc
Q 013264 282 RFKPDAECYDPKTGS 296 (446)
Q Consensus 282 ~~~~~v~~yd~~~~~ 296 (446)
...+++||+....
T Consensus 155 --~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 155 --NGRIWRFDLDADG 167 (246)
T ss_dssp --TTEEEEEEEETTT
T ss_pred --cceeEEEeccccc
Confidence 3469999986443
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.73 E-value=8.5 Score=38.18 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=73.0
Q ss_pred eeEEEEECCCCcEEe-cCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcE-EEccCCccCcc
Q 013264 131 YGLTIFNASNGTWER-IRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRW-RRVKPMSVARS 208 (446)
Q Consensus 131 ~~~~~ydp~~~~W~~-l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W-~~~~~~p~~r~ 208 (446)
..+..|+..+..=.+ +..+. ....++..-.+|+|+++|+..+ .|.+||. .++.- +.+-. .+++.
T Consensus 48 ~rvqly~~~~~~~~k~~srFk----~~v~s~~fR~DG~LlaaGD~sG-------~V~vfD~--k~r~iLR~~~a-h~apv 113 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFK----DVVYSVDFRSDGRLLAAGDESG-------HVKVFDM--KSRVILRQLYA-HQAPV 113 (487)
T ss_pred cEEEEEecchhhhhhhHHhhc----cceeEEEeecCCeEEEccCCcC-------cEEEecc--ccHHHHHHHhh-ccCce
Confidence 356788877654333 22222 1112233346899999998644 5889997 44221 11111 11111
Q ss_pred ceE-EEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEE-ec-CCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccC
Q 013264 209 FFA-CAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWR-ML-PEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKP 285 (446)
Q Consensus 209 ~~~-~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~-~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 285 (446)
... ....+ +++++.|+-+ ..+..+|..+..=. .+ ..--.-|. .++.-.++.|.+.|||++
T Consensus 114 ~~~~f~~~d-~t~l~s~sDd------~v~k~~d~s~a~v~~~l~~htDYVR~--g~~~~~~~hivvtGsYDg-------- 176 (487)
T KOG0310|consen 114 HVTKFSPQD-NTMLVSGSDD------KVVKYWDLSTAYVQAELSGHTDYVRC--GDISPANDHIVVTGSYDG-------- 176 (487)
T ss_pred eEEEecccC-CeEEEecCCC------ceEEEEEcCCcEEEEEecCCcceeEe--eccccCCCeEEEecCCCc--------
Confidence 111 12334 7888888643 33445555554411 11 11112332 244455778999999876
Q ss_pred cEEEEeCCCC-ceE
Q 013264 286 DAECYDPKTG-SWS 298 (446)
Q Consensus 286 ~v~~yd~~~~-~W~ 298 (446)
.+-.||..+. .|.
T Consensus 177 ~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRV 190 (487)
T ss_pred eEEEEEeccCCcee
Confidence 5888999877 453
No 75
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.49 E-value=15 Score=36.06 Aligned_cols=136 Identities=19% Similarity=0.309 Sum_probs=72.0
Q ss_pred eEEEEECCCC--cEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCc--
Q 013264 132 GLTIFNASNG--TWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVAR-- 207 (446)
Q Consensus 132 ~~~~ydp~~~--~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r-- 207 (446)
.+.++|+.+. .|+.-...+. ......+..+..++.+| +|.. ...++.+|+.+.+..|+.--..+...
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~-~~~~~~~sp~~~~~~v~-~~~~-------~g~v~ald~~tG~~~W~~~~~~~~g~~~ 226 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPA-LTLRGSASPVIADGGVL-VGFA-------GGKLVALDLQTGQPLWEQRVALPKGRTE 226 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCc-eeecCCCCCEEECCEEE-EECC-------CCEEEEEEccCCCEeeeeccccCCCCCc
Confidence 4678888765 4764332221 00011112222456554 4432 23588899832334576432212111
Q ss_pred ------cceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCC--cEEecCCCCccCCcceEEEEECCEEEEEeCCCCCC
Q 013264 208 ------SFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEAD--EWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTES 279 (446)
Q Consensus 208 ------~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~ 279 (446)
......+.+ +.||+.... ..+..||..++ .|+.-. . .. ...++.++++|+...
T Consensus 227 ~~~~~~~~~~p~~~~-~~vy~~~~~-------g~l~a~d~~tG~~~W~~~~--~---~~-~~p~~~~~~vyv~~~----- 287 (377)
T TIGR03300 227 LERLVDVDGDPVVDG-GQVYAVSYQ-------GRVAALDLRSGRVLWKRDA--S---SY-QGPAVDDNRLYVTDA----- 287 (377)
T ss_pred hhhhhccCCccEEEC-CEEEEEEcC-------CEEEEEECCCCcEEEeecc--C---Cc-cCceEeCCEEEEECC-----
Confidence 111223344 788886431 46889998876 487531 1 11 344567889998743
Q ss_pred CCcccCcEEEEeCCCC--ceEE
Q 013264 280 QGRFKPDAECYDPKTG--SWSK 299 (446)
Q Consensus 280 ~~~~~~~v~~yd~~~~--~W~~ 299 (446)
...++++|..++ .|+.
T Consensus 288 ----~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 288 ----DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ----CCeEEEEECCCCcEEEcc
Confidence 126999999877 4865
No 76
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=91.42 E-value=9.5 Score=36.63 Aligned_cols=131 Identities=16% Similarity=0.181 Sum_probs=80.2
Q ss_pred CEEEEEeCc-C-CCCCCcc-CeEEEEeCcCCCC-----cEEEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEE
Q 013264 166 RKLLLIGGW-D-PITLEPV-PDVYVLDMVNNSS-----RWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAE 237 (446)
Q Consensus 166 ~~lyv~GG~-~-~~~~~~~-~~v~~~d~~~~t~-----~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~ 237 (446)
...+++|.. . +....+. ..+++|+. .+. +.+.+......-.-.+++.++ ++|.+..| +.+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i--~~~~~~~~~l~~i~~~~~~g~V~ai~~~~-~~lv~~~g--------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEI--SESPENNFKLKLIHSTEVKGPVTAICSFN-GRLVVAVG--------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEE--CSS-----EEEEEEEEEESS-EEEEEEET-TEEEEEET--------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEE--EcccccceEEEEEEEEeecCcceEhhhhC-CEEEEeec--------CEEE
Confidence 466666643 1 1111123 67999999 553 566665555554556777787 78666655 5788
Q ss_pred EEECCCCc-EEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcccCCCCCCCCCCCceE
Q 013264 238 VYDVEADE-WRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTA 316 (446)
Q Consensus 238 ~yd~~t~~-W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~ 316 (446)
+|+...++ +...+.+..+-.. .++.+.++.|++---+.+ -.+..|+.+..+-..++. -..++...+
T Consensus 111 v~~l~~~~~l~~~~~~~~~~~i-~sl~~~~~~I~vgD~~~s-------v~~~~~~~~~~~l~~va~-----d~~~~~v~~ 177 (321)
T PF03178_consen 111 VYDLDNSKTLLKKAFYDSPFYI-TSLSVFKNYILVGDAMKS-------VSLLRYDEENNKLILVAR-----DYQPRWVTA 177 (321)
T ss_dssp EEEEETTSSEEEEEEE-BSSSE-EEEEEETTEEEEEESSSS-------EEEEEEETTTE-EEEEEE-----ESS-BEEEE
T ss_pred EEEccCcccchhhheecceEEE-EEEeccccEEEEEEcccC-------EEEEEEEccCCEEEEEEe-----cCCCccEEE
Confidence 89888888 8888776665543 677888887776433221 145577887777887773 334566666
Q ss_pred EEEe
Q 013264 317 TITS 320 (446)
Q Consensus 317 ~~~~ 320 (446)
+..+
T Consensus 178 ~~~l 181 (321)
T PF03178_consen 178 AEFL 181 (321)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6666
No 77
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.22 E-value=18 Score=36.35 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=78.8
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeC-CEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPAS-RKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~-~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~ 210 (446)
.++.+|..+++-+.+...+. ........-+ .+|++....++ ..+++++|. .+...+++..-...-..
T Consensus 224 ~l~~~~l~~g~~~~l~~~~g----~~~~~~~SpDG~~la~~~~~~g-----~~~Iy~~d~--~~~~~~~lt~~~~~~~~- 291 (430)
T PRK00178 224 RIFVQNLDTGRREQITNFEG----LNGAPAWSPDGSKLAFVLSKDG-----NPEIYVMDL--ASRQLSRVTNHPAIDTE- 291 (430)
T ss_pred EEEEEECCCCCEEEccCCCC----CcCCeEECCCCCEEEEEEccCC-----CceEEEEEC--CCCCeEEcccCCCCcCC-
Confidence 46777888777777665442 1111222233 44554432222 247999999 78888877543221111
Q ss_pred EEEEECC-cEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEE
Q 013264 211 ACAVVGA-STVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAEC 289 (446)
Q Consensus 211 ~~~~~~d-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~ 289 (446)
.....| .+||......+ ...++.+|..+++++++.... .........-.++.|++.....+ ...++.
T Consensus 292 -~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~------~~~l~~ 359 (430)
T PRK00178 292 -PFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG------NFHVAA 359 (430)
T ss_pred -eEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC------ceEEEE
Confidence 122223 45655533222 257899999999888775221 11110111223446665543222 236899
Q ss_pred EeCCCCceEEcc
Q 013264 290 YDPKTGSWSKFD 301 (446)
Q Consensus 290 yd~~~~~W~~~~ 301 (446)
+|+.++..+.+.
T Consensus 360 ~dl~tg~~~~lt 371 (430)
T PRK00178 360 QDLQRGSVRILT 371 (430)
T ss_pred EECCCCCEEEcc
Confidence 999999888776
No 78
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.86 E-value=13 Score=34.37 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=53.3
Q ss_pred EEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECC-cEEEEEeccCCCCCCCCeEEEEECCCCc
Q 013264 167 KLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGA-STVCVAGGHDGQKNALKSAEVYDVEADE 245 (446)
Q Consensus 167 ~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d-~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 245 (446)
.+|+.++.+ ..+.+||+ .+.+-...-.... + ..+++...+ ..+|+.++.+ ..+.+||..+.+
T Consensus 2 ~~~~s~~~d-------~~v~~~d~--~t~~~~~~~~~~~-~-~~~l~~~~dg~~l~~~~~~~------~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNEKD-------NTISVIDT--ATLEVTRTFPVGQ-R-PRGITLSKDGKLLYVCASDS------DTIQVIDLATGE 64 (300)
T ss_pred cEEEEecCC-------CEEEEEEC--CCCceEEEEECCC-C-CCceEECCCCCEEEEEECCC------CeEEEEECCCCc
Confidence 566766643 36888998 6665333211111 1 122333333 3577776532 578899998877
Q ss_pred EEecCCCCccCCcceEEEEE--CCEEEEEeCCCCCCCCcccCcEEEEeCCCCc
Q 013264 246 WRMLPEMDEERDECQGVCLE--GDRFFVVSGYGTESQGRFKPDAECYDPKTGS 296 (446)
Q Consensus 246 W~~~~~~~~~r~~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~ 296 (446)
....-..... . ..+++. ++.+|+.++.+ ..+..||+.+.+
T Consensus 65 ~~~~~~~~~~--~-~~~~~~~~g~~l~~~~~~~--------~~l~~~d~~~~~ 106 (300)
T TIGR03866 65 VIGTLPSGPD--P-ELFALHPNGKILYIANEDD--------NLVTVIDIETRK 106 (300)
T ss_pred EEEeccCCCC--c-cEEEECCCCCEEEEEcCCC--------CeEEEEECCCCe
Confidence 6542111111 1 122222 33566665422 368999998764
No 79
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.81 E-value=13 Score=34.04 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=66.7
Q ss_pred CCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEE-CCcEEEEEeccCCCCCCCCeEEEEECCC
Q 013264 165 SRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVV-GASTVCVAGGHDGQKNALKSAEVYDVEA 243 (446)
Q Consensus 165 ~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~-~d~~iyv~GG~~~~~~~~~~~~~yd~~t 243 (446)
++.||+..- ....++++|+ .+.+-..+.. +. ..++++. .++++|+... ....++|+.+
T Consensus 11 ~g~l~~~D~-------~~~~i~~~~~--~~~~~~~~~~-~~---~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~ 69 (246)
T PF08450_consen 11 DGRLYWVDI-------PGGRIYRVDP--DTGEVEVIDL-PG---PNGMAFDRPDGRLYVADS--------GGIAVVDPDT 69 (246)
T ss_dssp TTEEEEEET-------TTTEEEEEET--TTTEEEEEES-SS---EEEEEEECTTSEEEEEET--------TCEEEEETTT
T ss_pred CCEEEEEEc-------CCCEEEEEEC--CCCeEEEEec-CC---CceEEEEccCCEEEEEEc--------CceEEEecCC
Confidence 688888843 2457999999 6666554322 22 3444554 4589998864 2346679999
Q ss_pred CcEEecCCCC-----ccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 244 DEWRMLPEMD-----EERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 244 ~~W~~~~~~~-----~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
++++.+...+ ..+.. -.++--+|.||+..-............++++++. ++.+.+.
T Consensus 70 g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred CcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 9999886553 12221 2233446789886332211100111469999999 6666654
No 80
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.81 E-value=7.1 Score=36.18 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=75.0
Q ss_pred eEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEE
Q 013264 158 QCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAE 237 (446)
Q Consensus 158 ~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~ 237 (446)
.+.....++.||.--|.-+ .+.+..+|+ .+.+-.+..++|..-.+=+++.++ ++||..-= ....+.
T Consensus 48 QGL~~~~~g~LyESTG~yG-----~S~l~~~d~--~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTW------k~~~~f 113 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYG-----QSSLRKVDL--ETGKVLQSVPLPPRYFGEGITILG-DKLYQLTW------KEGTGF 113 (264)
T ss_dssp EEEEEEETTEEEEEECSTT-----EEEEEEEET--TTSSEEEEEE-TTT--EEEEEEET-TEEEEEES------SSSEEE
T ss_pred ccEEecCCCEEEEeCCCCC-----cEEEEEEEC--CCCcEEEEEECCccccceeEEEEC-CEEEEEEe------cCCeEE
Confidence 4444436889999888754 457899999 888876666677665566788888 79999842 236789
Q ss_pred EEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCC
Q 013264 238 VYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTG 295 (446)
Q Consensus 238 ~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~ 295 (446)
+||..+ .+.+...+.+..+ =+++..+..||+.-|. +.++..||++-
T Consensus 114 ~yd~~t--l~~~~~~~y~~EG-WGLt~dg~~Li~SDGS---------~~L~~~dP~~f 159 (264)
T PF05096_consen 114 VYDPNT--LKKIGTFPYPGEG-WGLTSDGKRLIMSDGS---------SRLYFLDPETF 159 (264)
T ss_dssp EEETTT--TEEEEEEE-SSS---EEEECSSCEEEE-SS---------SEEEEE-TTT-
T ss_pred EEcccc--ceEEEEEecCCcc-eEEEcCCCEEEEECCc---------cceEEECCccc
Confidence 999875 4555555555555 5777778888888773 47899999864
No 81
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.23 E-value=22 Score=35.79 Aligned_cols=145 Identities=16% Similarity=0.185 Sum_probs=77.9
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCC-EEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASR-KLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~ 210 (446)
.++.+|..+++-..+...+. ...+....-++ +|++....++ ..+++++|+ .+..-+++..-...- .
T Consensus 229 ~l~~~dl~~g~~~~l~~~~g----~~~~~~~SpDG~~l~~~~s~~g-----~~~Iy~~d~--~~g~~~~lt~~~~~~--~ 295 (433)
T PRK04922 229 AIYVQDLATGQRELVASFRG----INGAPSFSPDGRRLALTLSRDG-----NPEIYVMDL--GSRQLTRLTNHFGID--T 295 (433)
T ss_pred EEEEEECCCCCEEEeccCCC----CccCceECCCCCEEEEEEeCCC-----CceEEEEEC--CCCCeEECccCCCCc--c
Confidence 46778888877777665542 11112222334 5555433222 247999999 777776664432111 1
Q ss_pred EEEEECCc-EEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCc-ceEEEEECCEEEEEeCCCCCCCCcccCcEE
Q 013264 211 ACAVVGAS-TVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDE-CQGVCLEGDRFFVVSGYGTESQGRFKPDAE 288 (446)
Q Consensus 211 ~~~~~~d~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~ 288 (446)
......|+ +|+......+ ...++++|..+++.+.+..-. ... ..+..-.+..|++..+.++ ...++
T Consensus 296 ~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~------~~~I~ 363 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGSGG------QYRIA 363 (433)
T ss_pred ceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECCCC------ceeEE
Confidence 12222234 4554433222 257889999888887765211 111 1122223446666544221 12789
Q ss_pred EEeCCCCceEEcc
Q 013264 289 CYDPKTGSWSKFD 301 (446)
Q Consensus 289 ~yd~~~~~W~~~~ 301 (446)
.+|+.++....+.
T Consensus 364 v~d~~~g~~~~Lt 376 (433)
T PRK04922 364 VMDLSTGSVRTLT 376 (433)
T ss_pred EEECCCCCeEECC
Confidence 9999988887665
No 82
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=90.08 E-value=21 Score=35.42 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=77.9
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCC-EEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASR-KLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~ 210 (446)
.++.+|..+++-..+..... .. .+....-++ .|++.....+ ..+++.+|. .+...+.+..........
T Consensus 215 ~i~v~d~~~g~~~~~~~~~~--~~--~~~~~spDg~~l~~~~~~~~-----~~~i~~~d~--~~~~~~~l~~~~~~~~~~ 283 (417)
T TIGR02800 215 EIYVQDLATGQREKVASFPG--MN--GAPAFSPDGSKLAVSLSKDG-----NPDIYVMDL--DGKQLTRLTNGPGIDTEP 283 (417)
T ss_pred EEEEEECCCCCEEEeecCCC--Cc--cceEECCCCCEEEEEECCCC-----CccEEEEEC--CCCCEEECCCCCCCCCCE
Confidence 57788888877666654432 11 112222344 4655543222 346999999 777777775433221111
Q ss_pred EEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEE-EECCEEEEEeCCCCCCCCcccCcEEE
Q 013264 211 ACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVC-LEGDRFFVVSGYGTESQGRFKPDAEC 289 (446)
Q Consensus 211 ~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~v~~ 289 (446)
... -++.+|++.....+ ...++++|..+..++.+..-.. .. .... .-+++.+++...... ...++.
T Consensus 284 ~~s-~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~~--~~-~~~~~spdg~~i~~~~~~~~-----~~~i~~ 350 (417)
T TIGR02800 284 SWS-PDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRGG--YN-ASPSWSPDGDLIAFVHREGG-----GFNIAV 350 (417)
T ss_pred EEC-CCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCC--Cc-cCeEECCCCCEEEEEEccCC-----ceEEEE
Confidence 111 12235555443322 2478999999888877653221 11 1222 234555555443221 236899
Q ss_pred EeCCCCceEEcc
Q 013264 290 YDPKTGSWSKFD 301 (446)
Q Consensus 290 yd~~~~~W~~~~ 301 (446)
+|+.++.++.+.
T Consensus 351 ~d~~~~~~~~l~ 362 (417)
T TIGR02800 351 MDLDGGGERVLT 362 (417)
T ss_pred EeCCCCCeEEcc
Confidence 999987777665
No 83
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.01 E-value=14 Score=33.25 Aligned_cols=140 Identities=21% Similarity=0.268 Sum_probs=80.4
Q ss_pred ceeEEEEECCCCc--EEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEE-EccCCccC
Q 013264 130 QYGLTIFNASNGT--WERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWR-RVKPMSVA 206 (446)
Q Consensus 130 ~~~~~~ydp~~~~--W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~-~~~~~p~~ 206 (446)
...+.++|..+.+ |+.-.+-+ .... . +..++.||+..+ .+.++.+|..+.+-.|+ .....+..
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~~----~~~~-~-~~~~~~v~v~~~--------~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPGP----ISGA-P-VVDGGRVYVGTS--------DGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSSC----GGSG-E-EEETTEEEEEET--------TSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred CCEEEEEECCCCCEEEEeecccc----ccce-e-eecccccccccc--------eeeeEecccCCcceeeeecccccccc
Confidence 3468899987775 66543221 1111 2 336899988863 23699999733455698 44332322
Q ss_pred --ccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCc--EEecCCCCccCC-------cceEEEEECCEEEEEeCC
Q 013264 207 --RSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADE--WRMLPEMDEERD-------ECQGVCLEGDRFFVVSGY 275 (446)
Q Consensus 207 --r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~-------~~~~~~~~~~~lyv~GG~ 275 (446)
.......+.+ +.+|+... ...+..+|+.+++ |+.-...+.... .....++.++.+|+..+.
T Consensus 111 ~~~~~~~~~~~~-~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (238)
T PF13360_consen 111 GVRSSSSPAVDG-DRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD 182 (238)
T ss_dssp STB--SEEEEET-TEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT
T ss_pred ccccccCceEec-CEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC
Confidence 2333444445 67777654 2678999998774 876444432111 112344456788887653
Q ss_pred CCCCCCcccCcEEEEeCCCCc--eEEc
Q 013264 276 GTESQGRFKPDAECYDPKTGS--WSKF 300 (446)
Q Consensus 276 ~~~~~~~~~~~v~~yd~~~~~--W~~~ 300 (446)
. .+..+|..+++ |+..
T Consensus 183 g---------~~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 183 G---------RVVAVDLATGEKLWSKP 200 (238)
T ss_dssp S---------SEEEEETTTTEEEEEEC
T ss_pred C---------eEEEEECCCCCEEEEec
Confidence 2 25667999997 8443
No 84
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=89.72 E-value=4.6 Score=39.78 Aligned_cols=134 Identities=11% Similarity=0.148 Sum_probs=75.9
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceE
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFA 211 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~ 211 (446)
-++.||..+.+-.++.++-+.-.+..+.-.++.++...++-|..+ .++.... .|+.|..--.++..-..++
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-------~I~lLha--kT~eli~s~KieG~v~~~~ 351 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-------HIHLLHA--KTKELITSFKIEGVVSDFT 351 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc-------eEEeehh--hhhhhhheeeeccEEeeEE
Confidence 478899999999998887651112222222335666777777543 4666666 6777754434443333343
Q ss_pred EEEECCcEEEEEeccCCCCCCCCeEEEEECCCCc----EEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcE
Q 013264 212 CAVVGASTVCVAGGHDGQKNALKSAEVYDVEADE----WRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDA 287 (446)
Q Consensus 212 ~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~----W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v 287 (446)
...-+ ..||+.||. ..|+++|..++. |..-... .+.+-+...++. |+..|.+. ..|
T Consensus 352 fsSds-k~l~~~~~~-------GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~-ylA~GS~~-------GiV 411 (514)
T KOG2055|consen 352 FSSDS-KELLASGGT-------GEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGS-YLATGSDS-------GIV 411 (514)
T ss_pred EecCC-cEEEEEcCC-------ceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCc-eEEeccCc-------ceE
Confidence 33333 578888775 478999998873 3332222 221122234556 55545432 257
Q ss_pred EEEeCCC
Q 013264 288 ECYDPKT 294 (446)
Q Consensus 288 ~~yd~~~ 294 (446)
-.||-++
T Consensus 412 NIYd~~s 418 (514)
T KOG2055|consen 412 NIYDGNS 418 (514)
T ss_pred EEeccch
Confidence 7787644
No 85
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.40 E-value=6.4 Score=36.48 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=67.9
Q ss_pred EEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEe
Q 013264 212 CAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYD 291 (446)
Q Consensus 212 ~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd 291 (446)
....+++.+|.--|.-+. +.+..||+.|++=....++|..-.+ -++++.+++||...=. ...+.+||
T Consensus 50 L~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~~l~~~~Fg-EGit~~~d~l~qLTWk--------~~~~f~yd 116 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSVPLPPRYFG-EGITILGDKLYQLTWK--------EGTGFVYD 116 (264)
T ss_dssp EEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEEE-TTT--E-EEEEEETTEEEEEESS--------SSEEEEEE
T ss_pred EEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEEECCccccc-eeEEEECCEEEEEEec--------CCeEEEEc
Confidence 334345899998887554 6899999999987777777765554 7899999999998543 34789999
Q ss_pred CCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCC
Q 013264 292 PKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQ 337 (446)
Q Consensus 292 ~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~ 337 (446)
+.+ .+.+.. .+.+..+-+.+..+. .|++--|.+.
T Consensus 117 ~~t--l~~~~~-----~~y~~EGWGLt~dg~-----~Li~SDGS~~ 150 (264)
T PF05096_consen 117 PNT--LKKIGT-----FPYPGEGWGLTSDGK-----RLIMSDGSSR 150 (264)
T ss_dssp TTT--TEEEEE-----EE-SSS--EEEECSS-----CEEEE-SSSE
T ss_pred ccc--ceEEEE-----EecCCcceEEEcCCC-----EEEEECCccc
Confidence 975 555552 234456777775554 7888888554
No 86
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.98 E-value=12 Score=38.79 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=66.3
Q ss_pred eCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCc--------cceEEEEECCcEEEEEeccCCCCCCCCe
Q 013264 164 ASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVAR--------SFFACAVVGASTVCVAGGHDGQKNALKS 235 (446)
Q Consensus 164 ~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r--------~~~~~~~~~d~~iyv~GG~~~~~~~~~~ 235 (446)
.++.||+... ...++.+|..+....|+.-...+... ...+.++.+ ++||+... -..
T Consensus 68 ~~g~vyv~s~--------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~-~~v~v~t~-------dg~ 131 (527)
T TIGR03075 68 VDGVMYVTTS--------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD-GKVFFGTL-------DAR 131 (527)
T ss_pred ECCEEEEECC--------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC-CEEEEEcC-------CCE
Confidence 6899998643 23588888833345687654332111 112234555 78887432 146
Q ss_pred EEEEECCCCc--EEecC-CCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCc--eEEc
Q 013264 236 AEVYDVEADE--WRMLP-EMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGS--WSKF 300 (446)
Q Consensus 236 ~~~yd~~t~~--W~~~~-~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~ 300 (446)
+..+|..|.+ |+.-. ..........+-++.++++|+-...... .....+.+||.++++ |+.-
T Consensus 132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~---~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEF---GVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeeccccc---CCCcEEEEEECCCCceeEecc
Confidence 8999998774 87532 2221111112345678888775321110 123479999999984 7643
No 87
>PRK03629 tolB translocation protein TolB; Provisional
Probab=88.83 E-value=28 Score=35.04 Aligned_cols=145 Identities=14% Similarity=0.125 Sum_probs=74.7
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCC-EEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASR-KLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~ 210 (446)
.++.+|..+++-+.+...+. ........-++ .|++.....+ ..+++++|. .+.+.+++..-...- .
T Consensus 224 ~i~i~dl~~G~~~~l~~~~~----~~~~~~~SPDG~~La~~~~~~g-----~~~I~~~d~--~tg~~~~lt~~~~~~--~ 290 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFPR----HNGAPAFSPDGSKLAFALSKTG-----SLNLYVMDL--ASGQIRQVTDGRSNN--T 290 (429)
T ss_pred EEEEEECCCCCeEEccCCCC----CcCCeEECCCCCEEEEEEcCCC-----CcEEEEEEC--CCCCEEEccCCCCCc--C
Confidence 45666776666555554442 11112222344 4555433222 236999999 778777775433211 1
Q ss_pred EEEEECCcE-EEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECC-EEEEEeCCCCCCCCcccCcEE
Q 013264 211 ACAVVGAST-VCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGD-RFFVVSGYGTESQGRFKPDAE 288 (446)
Q Consensus 211 ~~~~~~d~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~v~ 288 (446)
......|++ |+......+ ...++.+|..+..-+.+...... .. .....-++ .|++.+...+ ...++
T Consensus 291 ~~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~~~-~~-~~~~SpDG~~Ia~~~~~~g------~~~I~ 358 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEGSQ-NQ-DADVSSDGKFMVMVSSNGG------QQHIA 358 (429)
T ss_pred ceEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCCCC-cc-CEEECCCCCEEEEEEccCC------CceEE
Confidence 122222344 444332211 25788889988776666432211 11 11222244 5544443322 23689
Q ss_pred EEeCCCCceEEcc
Q 013264 289 CYDPKTGSWSKFD 301 (446)
Q Consensus 289 ~yd~~~~~W~~~~ 301 (446)
.+|++++.++.+.
T Consensus 359 ~~dl~~g~~~~Lt 371 (429)
T PRK03629 359 KQDLATGGVQVLT 371 (429)
T ss_pred EEECCCCCeEEeC
Confidence 9999999988776
No 88
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=88.26 E-value=12 Score=36.92 Aligned_cols=108 Identities=13% Similarity=0.247 Sum_probs=65.1
Q ss_pred eCCE-EEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCcc--CccceEEEEECCcEEEEEeccCCCCCCCCeEEEEE
Q 013264 164 ASRK-LLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSV--ARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYD 240 (446)
Q Consensus 164 ~~~~-lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~--~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd 240 (446)
-+|. ..+++|. ..-++.||. .+.+-.++.++-. .+...-..+-.++.++++-|..+ .+....
T Consensus 267 p~G~~~i~~s~r-------rky~ysyDl--e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLh 331 (514)
T KOG2055|consen 267 PNGHSVIFTSGR-------RKYLYSYDL--ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLH 331 (514)
T ss_pred CCCceEEEeccc-------ceEEEEeec--cccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeeh
Confidence 3555 6777764 335899999 8888888866431 22322232333356777777543 456667
Q ss_pred CCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCc
Q 013264 241 VEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGS 296 (446)
Q Consensus 241 ~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~ 296 (446)
..|+.|..--.++..... .+....+..||+.||++ .|+++|+.++.
T Consensus 332 akT~eli~s~KieG~v~~-~~fsSdsk~l~~~~~~G---------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 332 AKTKELITSFKIEGVVSD-FTFSSDSKELLASGGTG---------EVYVWNLRQNS 377 (514)
T ss_pred hhhhhhhheeeeccEEee-EEEecCCcEEEEEcCCc---------eEEEEecCCcc
Confidence 777777643333332222 23333345788888853 69999999884
No 89
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=88.16 E-value=28 Score=34.17 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=71.3
Q ss_pred eEEEEECCCC--cEEecCCCCC---CCCcc--ceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCc
Q 013264 132 GLTIFNASNG--TWERIRPHVG---RIPMF--CQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMS 204 (446)
Q Consensus 132 ~~~~ydp~~~--~W~~l~~~~~---~~p~~--~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p 204 (446)
.+.++|+.+. .|+.-...+. ...+. ..+..+..++.||+... ...++.||+.+.+..|+.-. .
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~--------~g~l~a~d~~tG~~~W~~~~--~ 270 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY--------QGRVAALDLRSGRVLWKRDA--S 270 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc--------CCEEEEEECCCCcEEEeecc--C
Confidence 5678888776 4754221110 00000 01122235788888643 23588999833334576531 1
Q ss_pred cCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCC--cEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCc
Q 013264 205 VARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEAD--EWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGR 282 (446)
Q Consensus 205 ~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~ 282 (446)
.....++.+ ++||+... ...+.++|..++ .|+.-. +.. +.. .+.++.++.||+... +
T Consensus 271 ---~~~~p~~~~-~~vyv~~~-------~G~l~~~d~~tG~~~W~~~~-~~~-~~~-ssp~i~g~~l~~~~~-~------ 329 (377)
T TIGR03300 271 ---SYQGPAVDD-NRLYVTDA-------DGVVVALDRRSGSELWKNDE-LKY-RQL-TAPAVVGGYLVVGDF-E------ 329 (377)
T ss_pred ---CccCceEeC-CEEEEECC-------CCeEEEEECCCCcEEEcccc-ccC-Ccc-ccCEEECCEEEEEeC-C------
Confidence 112233445 79998742 157889998776 487521 211 111 334557888887532 1
Q ss_pred ccCcEEEEeCCCCc
Q 013264 283 FKPDAECYDPKTGS 296 (446)
Q Consensus 283 ~~~~v~~yd~~~~~ 296 (446)
..++++|..+++
T Consensus 330 --G~l~~~d~~tG~ 341 (377)
T TIGR03300 330 --GYLHWLSREDGS 341 (377)
T ss_pred --CEEEEEECCCCC
Confidence 268999998774
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.42 E-value=17 Score=36.14 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=70.7
Q ss_pred eeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEE-EeccCCCCCCCCeEEEEEC
Q 013264 163 PASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCV-AGGHDGQKNALKSAEVYDV 241 (446)
Q Consensus 163 ~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv-~GG~~~~~~~~~~~~~yd~ 241 (446)
..++.|++.||+++ .+-.||. .+.. ..+-.+...----.++.+..|.+++ +|| +.+-++|.
T Consensus 163 ~~~~hivvtGsYDg-------~vrl~Dt--R~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG--------n~vkVWDl 224 (487)
T KOG0310|consen 163 PANDHIVVTGSYDG-------KVRLWDT--RSLT-SRVVELNHGCPVESVLALPSGSLIASAGG--------NSVKVWDL 224 (487)
T ss_pred cCCCeEEEecCCCc-------eEEEEEe--ccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC--------CeEEEEEe
Confidence 35788999999976 3677888 5552 2222222111111234444334444 444 67788887
Q ss_pred CCCcEEecCCCCccCCcceEEEEE-CCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcccCCCCCCCCCCCceEEEEe
Q 013264 242 EADEWRMLPEMDEERDECQGVCLE-GDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRGSTATITS 320 (446)
Q Consensus 242 ~t~~W~~~~~~~~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~ 320 (446)
.++.=. +..|..-...-.++.+. ++.-.+.||.++ .|-+|| +..|..+.. +..+-.-.++++.
T Consensus 225 ~~G~ql-l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~--------~VKVfd--~t~~Kvv~s-----~~~~~pvLsiavs 288 (487)
T KOG0310|consen 225 TTGGQL-LTSMFNHNKTVTCLRLASDSTRLLSGSLDR--------HVKVFD--TTNYKVVHS-----WKYPGPVLSIAVS 288 (487)
T ss_pred cCCcee-hhhhhcccceEEEEEeecCCceEeeccccc--------ceEEEE--ccceEEEEe-----eecccceeeEEec
Confidence 654221 11111100011122222 334445566543 588998 566777763 3333334444555
Q ss_pred cCCCcccEEEEEcCCCCC
Q 013264 321 YRLQQHQWLWFLGKEQQQ 338 (446)
Q Consensus 321 ~~~~~~~~lyv~GG~~~~ 338 (446)
.+ +.-.++|..++.
T Consensus 289 ~d----d~t~viGmsnGl 302 (487)
T KOG0310|consen 289 PD----DQTVVIGMSNGL 302 (487)
T ss_pred CC----CceEEEecccce
Confidence 54 477888887765
No 91
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=87.37 E-value=28 Score=33.37 Aligned_cols=138 Identities=9% Similarity=0.055 Sum_probs=66.0
Q ss_pred eEEEEECCC-CcEEecCCCCCCCCccceEEEEee-CCEEEEEeCcCCCCCCccCeEEEEeCcCC-CCcEEEccCCccCcc
Q 013264 132 GLTIFNASN-GTWERIRPHVGRIPMFCQCVAVPA-SRKLLLIGGWDPITLEPVPDVYVLDMVNN-SSRWRRVKPMSVARS 208 (446)
Q Consensus 132 ~~~~ydp~~-~~W~~l~~~~~~~p~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~v~~~d~~~~-t~~W~~~~~~p~~r~ 208 (446)
.+..||..+ .++..+...+. ....+..+..- +..||+.+.. ...+..|+. . +.++..+...+.+..
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~-------~~~i~~~~~--~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRP-------EFRVLSYRI--ADDGALTFAAESPLPGS 81 (330)
T ss_pred CEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECC-------CCcEEEEEE--CCCCceEEeeeecCCCC
Confidence 466777653 56666555442 12223333322 3456775431 245777777 4 345655443332222
Q ss_pred ceEEEEECC-cEEEEEeccCCCCCCCCeEEEEECCCCc--EEecCCCCccCCcceEEEEE-C-CEEEEEeCCCCCCCCcc
Q 013264 209 FFACAVVGA-STVCVAGGHDGQKNALKSAEVYDVEADE--WRMLPEMDEERDECQGVCLE-G-DRFFVVSGYGTESQGRF 283 (446)
Q Consensus 209 ~~~~~~~~d-~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~-~-~~lyv~GG~~~~~~~~~ 283 (446)
...++...+ ..||+..- . .+.+.+||..++. .+.+...+... ..+++++. + ..+|+..-.
T Consensus 82 p~~i~~~~~g~~l~v~~~-~-----~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~p~g~~l~v~~~~-------- 146 (330)
T PRK11028 82 PTHISTDHQGRFLFSASY-N-----ANCVSVSPLDKDGIPVAPIQIIEGLE-GCHSANIDPDNRTLWVPCLK-------- 146 (330)
T ss_pred ceEEEECCCCCEEEEEEc-C-----CCeEEEEEECCCCCCCCceeeccCCC-cccEeEeCCCCCEEEEeeCC--------
Confidence 223333333 45766642 1 2577788876431 11222222111 12444444 3 366665431
Q ss_pred cCcEEEEeCCCC
Q 013264 284 KPDAECYDPKTG 295 (446)
Q Consensus 284 ~~~v~~yd~~~~ 295 (446)
.+.+.+||+.++
T Consensus 147 ~~~v~v~d~~~~ 158 (330)
T PRK11028 147 EDRIRLFTLSDD 158 (330)
T ss_pred CCEEEEEEECCC
Confidence 247999999763
No 92
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=86.51 E-value=36 Score=33.77 Aligned_cols=104 Identities=18% Similarity=0.258 Sum_probs=58.7
Q ss_pred CeEEEEeCcCCCCcEEEccCCccCccceEEEEECCc-EEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceE
Q 013264 183 PDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGAS-TVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQG 261 (446)
Q Consensus 183 ~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 261 (446)
..++++|. .+..-..+......... .+...|+ +|++.....+ ...++.+|..++..+.+......... ..
T Consensus 214 ~~i~v~d~--~~g~~~~~~~~~~~~~~--~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~~-~~ 284 (417)
T TIGR02800 214 PEIYVQDL--ATGQREKVASFPGMNGA--PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDTE-PS 284 (417)
T ss_pred cEEEEEEC--CCCCEEEeecCCCCccc--eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCCC-EE
Confidence 57899999 77766665544322222 2222233 5665543322 25789999999888777543322111 11
Q ss_pred EEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 262 VCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 262 ~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
....+.+|++.....+ ...++.+|..++.+..+.
T Consensus 285 ~s~dg~~l~~~s~~~g------~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 285 WSPDGKSIAFTSDRGG------SPQIYMMDADGGEVRRLT 318 (417)
T ss_pred ECCCCCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence 1122335555443322 237899999988887765
No 93
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=85.73 E-value=17 Score=29.65 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=53.3
Q ss_pred ECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCC--CccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEE-e
Q 013264 215 VGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEM--DEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECY-D 291 (446)
Q Consensus 215 ~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~--~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~y-d 291 (446)
++ |-+|-..-... .....+..||..+.+|+.+... +.........+-++|+|-++.-..... ...-++++. |
T Consensus 4 in-Gvly~~a~~~~--~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLeD 78 (129)
T PF08268_consen 4 IN-GVLYWLAWSED--SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLED 78 (129)
T ss_pred EC-cEEEeEEEECC--CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEeec
Confidence 44 78888776521 2347899999999999987542 222222367778899998876543221 012356666 4
Q ss_pred CCCCceEEccc
Q 013264 292 PKTGSWSKFDH 302 (446)
Q Consensus 292 ~~~~~W~~~~~ 302 (446)
.++.+|++...
T Consensus 79 ~~k~~Wsk~~~ 89 (129)
T PF08268_consen 79 YEKQEWSKKHI 89 (129)
T ss_pred cccceEEEEEE
Confidence 66789998754
No 94
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=84.98 E-value=32 Score=31.85 Aligned_cols=222 Identities=11% Similarity=0.076 Sum_probs=102.8
Q ss_pred CCCcEEecCCCCCC---CCccceEEEE-eeCCEEEEEe--CcCCCCCCccCeEEEEeCcCCCCcEEEccCCccC------
Q 013264 139 SNGTWERIRPHVGR---IPMFCQCVAV-PASRKLLLIG--GWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVA------ 206 (446)
Q Consensus 139 ~~~~W~~l~~~~~~---~p~~~~~~~~-~~~~~lyv~G--G~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~------ 206 (446)
.-++|.....+... .......+.+ ..+++|+++- +..........-.+..... .-.+|.....++..
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D-~G~TWs~~~~l~~~~~~~~~ 106 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTD-GGKTWSEPTDLPPGWFGNFS 106 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESS-TTSS-EEEEEEHHHCCCSCE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECC-CCCCCCCcccccccccccee
Confidence 34568774443220 1122233333 2489999886 2221111111111234331 25689887544322
Q ss_pred ccceE-EEEECCcEEEEEeccCCCCCCCCeEEEEECC-CCcEEecCCCCcc-CCcceEEE-EECCEEEEEeCCCCCCCCc
Q 013264 207 RSFFA-CAVVGASTVCVAGGHDGQKNALKSAEVYDVE-ADEWRMLPEMDEE-RDECQGVC-LEGDRFFVVSGYGTESQGR 282 (446)
Q Consensus 207 r~~~~-~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~-r~~~~~~~-~~~~~lyv~GG~~~~~~~~ 282 (446)
..... ...+.++++++.. +............|... -.+|+.....+.. .....+.+ .-++.|+++-... ..
T Consensus 107 ~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~--- 181 (275)
T PF13088_consen 107 GPGRGPPIQLPDGRLIAPY-YHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GN--- 181 (275)
T ss_dssp ECSEEEEEEECTTEEEEEE-EEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SS---
T ss_pred ccceeeeeEecCCCEEEEE-eeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CC---
Confidence 11111 2344458888872 21111122344445554 4469988665322 22212232 2467888886542 11
Q ss_pred ccCcEEEEeCCC-CceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC---------CceeEeceEEeecc
Q 013264 283 FKPDAECYDPKT-GSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ---------NGEVVKGKIVSSIV 352 (446)
Q Consensus 283 ~~~~v~~yd~~~-~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~---------~~~~~~W~~~~~~~ 352 (446)
......+.... .+|+..... ..|.+......+...+ ++++++...... ..+..+|.....+.
T Consensus 182 -~~~~~~~S~D~G~TWs~~~~~---~~~~~~~~~~~~~~~~----g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~ 253 (275)
T PF13088_consen 182 -DDIYISRSTDGGRTWSPPQPT---NLPNPNSSISLVRLSD----GRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTID 253 (275)
T ss_dssp -TEEEEEEESSTTSS-EEEEEE---ECSSCCEEEEEEECTT----SEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEE
T ss_pred -CcEEEEEECCCCCcCCCceec---ccCcccCCceEEEcCC----CCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEe
Confidence 02344444443 379986532 4555555555555554 577777663211 12356776544331
Q ss_pred CCCCcCCCCCCCCeEEEeeccccCCCceEEE
Q 013264 353 PLPKSVTEGSSSPCVSVTTLHNSQQQQKVFV 383 (446)
Q Consensus 353 ~~p~~~~~~R~~~~~~~~~~~~~~~~~~l~v 383 (446)
+-+ ...-.+.+++..+ +++|||
T Consensus 254 ~~~---~~~~~Y~~~~~~~------dg~l~i 275 (275)
T PF13088_consen 254 DGP---NGDSGYPSLTQLP------DGKLYI 275 (275)
T ss_dssp EEE----CCEEEEEEEEEE------TTEEEE
T ss_pred CCC---CCcEECCeeEEeC------CCcCCC
Confidence 211 1112356667766 578886
No 95
>PRK05137 tolB translocation protein TolB; Provisional
Probab=84.84 E-value=46 Score=33.48 Aligned_cols=146 Identities=12% Similarity=0.095 Sum_probs=75.9
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCC-EEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASR-KLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~ 210 (446)
.++.+|+.+++...+...+. . .......-++ .|++....++ ..++|++|. .+..-+++..-+..-..
T Consensus 227 ~i~~~dl~~g~~~~l~~~~g--~--~~~~~~SPDG~~la~~~~~~g-----~~~Iy~~d~--~~~~~~~Lt~~~~~~~~- 294 (435)
T PRK05137 227 RVYLLDLETGQRELVGNFPG--M--TFAPRFSPDGRKVVMSLSQGG-----NTDIYTMDL--RSGTTTRLTDSPAIDTS- 294 (435)
T ss_pred EEEEEECCCCcEEEeecCCC--c--ccCcEECCCCCEEEEEEecCC-----CceEEEEEC--CCCceEEccCCCCccCc-
Confidence 57788888888777765542 1 1112222344 4544433222 347999999 77877777543321111
Q ss_pred EEEEECCc-EEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEE
Q 013264 211 ACAVVGAS-TVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAEC 289 (446)
Q Consensus 211 ~~~~~~d~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~ 289 (446)
...-.|+ +|+......+ ...++++|..+.+.+.+.... .........-.++.|++.....+ ...++.
T Consensus 295 -~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~------~~~i~~ 362 (435)
T PRK05137 295 -PSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGG------QFSIGV 362 (435)
T ss_pred -eeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCC------ceEEEE
Confidence 1222233 4544332221 257899998888777765321 11111122222345555432111 136888
Q ss_pred EeCCCCceEEcc
Q 013264 290 YDPKTGSWSKFD 301 (446)
Q Consensus 290 yd~~~~~W~~~~ 301 (446)
+|+.++....+.
T Consensus 363 ~d~~~~~~~~lt 374 (435)
T PRK05137 363 MKPDGSGERILT 374 (435)
T ss_pred EECCCCceEecc
Confidence 998777665554
No 96
>smart00284 OLF Olfactomedin-like domains.
Probab=83.91 E-value=36 Score=31.49 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=45.7
Q ss_pred cEEEEEeccCCCCCCCCeEEEEEC----CCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCC
Q 013264 218 STVCVAGGHDGQKNALKSAEVYDV----EADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPK 293 (446)
Q Consensus 218 ~~iyv~GG~~~~~~~~~~~~~yd~----~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~ 293 (446)
+++|++.+... ..+.+..|.. ....+.+.-.+|.+-.+ .+.++.+|.||.--.. ...|.+||+.
T Consensus 35 ~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~G-tG~VVYngslYY~~~~--------s~~iiKydL~ 102 (255)
T smart00284 35 SLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDHPLPHAGQG-TGVVVYNGSLYFNKFN--------SHDICRFDLT 102 (255)
T ss_pred ceEEEEccccC---CCcEEEEecCHHHHhccCCceEEECCCcccc-ccEEEECceEEEEecC--------CccEEEEECC
Confidence 68999876542 2256666654 23344433345665555 7889999999986432 3579999999
Q ss_pred CCceE
Q 013264 294 TGSWS 298 (446)
Q Consensus 294 ~~~W~ 298 (446)
+.+=.
T Consensus 103 t~~v~ 107 (255)
T smart00284 103 TETYQ 107 (255)
T ss_pred CCcEE
Confidence 98654
No 97
>PRK04792 tolB translocation protein TolB; Provisional
Probab=83.61 E-value=53 Score=33.25 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=60.7
Q ss_pred cCeEEEEeCcCCCCcEEEccCCccCccceEEEEECC-cEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcce
Q 013264 182 VPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGA-STVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQ 260 (446)
Q Consensus 182 ~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~ 260 (446)
...++++|+ .+.+-+.+...+..-. ......| .+|++....++ ...++++|..+++.+.+..-...... .
T Consensus 241 ~~~L~~~dl--~tg~~~~lt~~~g~~~--~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~~~-p 311 (448)
T PRK04792 241 KAEIFVQDI--YTQVREKVTSFPGING--APRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAIDTE-P 311 (448)
T ss_pred CcEEEEEEC--CCCCeEEecCCCCCcC--CeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCccc-e
Confidence 347999999 7777666655443222 2222223 45665543332 25789999999998887653221111 1
Q ss_pred EEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 261 GVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 261 ~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
...-.+..|++.....+ ...++.+|+.+++++.+.
T Consensus 312 ~wSpDG~~I~f~s~~~g------~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 312 SWHPDGKSLIFTSERGG------KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred EECCCCCEEEEEECCCC------CceEEEEECCCCCEEEEe
Confidence 21222335655543222 247999999999988875
No 98
>PRK04043 tolB translocation protein TolB; Provisional
Probab=82.58 E-value=57 Score=32.78 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=83.3
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCC-EEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASR-KLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~ 210 (446)
.++++|..+++=+.+...+. ........-++ +|++.-...+ ..++|++|. .+..++++...+.. ..
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g----~~~~~~~SPDG~~la~~~~~~g-----~~~Iy~~dl--~~g~~~~LT~~~~~--d~ 280 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQG----MLVVSDVSKDGSKLLLTMAPKG-----QPDIYLYDT--NTKTLTQITNYPGI--DV 280 (419)
T ss_pred EEEEEECCCCcEEEEecCCC----cEEeeEECCCCCEEEEEEccCC-----CcEEEEEEC--CCCcEEEcccCCCc--cC
Confidence 56777877776666654332 11112222344 5655443322 358999999 78889888654431 11
Q ss_pred EEEEECC-cEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEE
Q 013264 211 ACAVVGA-STVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAEC 289 (446)
Q Consensus 211 ~~~~~~d-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~ 289 (446)
......| .+||......+ ...++++|..+++.+++..-. ... ....-.++.|.+...............++.
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g--~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v 353 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHG--KNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYL 353 (419)
T ss_pred ccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCC--CcC-ceECCCCCEEEEEEcCCCcccCCCCcEEEE
Confidence 1122223 46777654432 268999999999887765321 122 222223334444433221110011357999
Q ss_pred EeCCCCceEEccc
Q 013264 290 YDPKTGSWSKFDH 302 (446)
Q Consensus 290 yd~~~~~W~~~~~ 302 (446)
+|++++.++.+..
T Consensus 354 ~d~~~g~~~~LT~ 366 (419)
T PRK04043 354 ISTNSDYIRRLTA 366 (419)
T ss_pred EECCCCCeEECCC
Confidence 9999999988873
No 99
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=81.16 E-value=33 Score=31.57 Aligned_cols=169 Identities=10% Similarity=0.088 Sum_probs=70.6
Q ss_pred EeeCCEEEEEeCcCCCCCCccCeE--EEEeCcC---CCCcEEEccCC-ccCccceEEEEECCcEEEEEeccCCCCCCCCe
Q 013264 162 VPASRKLLLIGGWDPITLEPVPDV--YVLDMVN---NSSRWRRVKPM-SVARSFFACAVVGASTVCVAGGHDGQKNALKS 235 (446)
Q Consensus 162 ~~~~~~lyv~GG~~~~~~~~~~~v--~~~d~~~---~t~~W~~~~~~-p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~ 235 (446)
+.+++.-|.+|=.+++.. -..+ ..|...- ..-.=+.++.- ....+..++-.++ +++|+.--.....+.-+.
T Consensus 142 a~i~~~~fA~GyHnGD~s--PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~-g~LyLtTRgt~~~~~GS~ 218 (367)
T PF12217_consen 142 ATIDDNQFAVGYHNGDVS--PRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYD-GVLYLTTRGTLPTNPGSS 218 (367)
T ss_dssp EE-SSS-EEEEEEE-SSS--S-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEET-TEEEEEEEES-TTS---E
T ss_pred eEecCCceeEEeccCCCC--cceeeEEEecccccCCcceeeeechhhhccccccchhhhhC-CEEEEEEcCcCCCCCcce
Confidence 346777778875544321 2222 2222100 11122333332 2223344555666 899998644333334466
Q ss_pred EEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCC---CCc--------ccCc-EEE-----EeCCCCceE
Q 013264 236 AEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTES---QGR--------FKPD-AEC-----YDPKTGSWS 298 (446)
Q Consensus 236 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~---~~~--------~~~~-v~~-----yd~~~~~W~ 298 (446)
+.+-+..-..|+.+.-.........-.+..++.||+||...... .++ +... +.. +.++.-+|.
T Consensus 219 L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~ 298 (367)
T PF12217_consen 219 LHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWV 298 (367)
T ss_dssp EEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---E
T ss_pred eeeecccCCchhhccccccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEE
Confidence 77777778889977422222222234567899999998752111 011 1111 111 345555677
Q ss_pred EcccCC-CCCCCCCCCceEEEEecCCCcccEEE-EEcCCCC
Q 013264 299 KFDHVW-PFPSLSPRGSTATITSYRLQQHQWLW-FLGKEQQ 337 (446)
Q Consensus 299 ~~~~~~-p~~~~~~r~~~~~~~~~~~~~~~~ly-v~GG~~~ 337 (446)
.+...+ .+..-..-.+.+.+++.+ +.|| +|||.+.
T Consensus 299 nitdqIYqG~ivNSavGVGSv~~KD----~~lyy~FGgED~ 335 (367)
T PF12217_consen 299 NITDQIYQGGIVNSAVGVGSVVVKD----GWLYYIFGGEDF 335 (367)
T ss_dssp EEEE-BB--SSS---SEEEEEEEET----TEEEEEEEEB-S
T ss_pred EeecceeccccccccccceeEEEEC----CEEEEEecCccc
Confidence 665321 112223345666677766 5664 7898764
No 100
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=80.69 E-value=48 Score=30.68 Aligned_cols=145 Identities=12% Similarity=0.144 Sum_probs=81.7
Q ss_pred eCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCc---EEEccCCcc---------CccceEEEEECCcEEEEEeccCCCCC
Q 013264 164 ASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSR---WRRVKPMSV---------ARSFFACAVVGASTVCVAGGHDGQKN 231 (446)
Q Consensus 164 ~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~---W~~~~~~p~---------~r~~~~~~~~~d~~iyv~GG~~~~~~ 231 (446)
.+|.+|---. .++.+.+||+ .+++ +..+|..-. +-...-.++-. +-|+|+=.......
T Consensus 77 YngslYY~~~-------~s~~IvkydL--~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~~~~g 146 (250)
T PF02191_consen 77 YNGSLYYNKY-------NSRNIVKYDL--TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATEDNNG 146 (250)
T ss_pred ECCcEEEEec-------CCceEEEEEC--cCCcEEEEEECCccccccccceecCCCceEEEEEcC-CCEEEEEecCCCCC
Confidence 6777776532 3678999999 5555 444433211 11112334443 66888865543321
Q ss_pred CCCeEEEEECCC----CcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcccCCCCC
Q 013264 232 ALKSAEVYDVEA----DEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDHVWPFP 307 (446)
Q Consensus 232 ~~~~~~~yd~~t----~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~ 307 (446)
.-.+-..|+.+ .+|.. ..+....+ .+..+| |.||++....... ..-.++||+.+++=..+.. +
T Consensus 147 -~ivvskld~~tL~v~~tw~T--~~~k~~~~-naFmvC-GvLY~~~s~~~~~----~~I~yafDt~t~~~~~~~i----~ 213 (250)
T PF02191_consen 147 -NIVVSKLDPETLSVEQTWNT--SYPKRSAG-NAFMVC-GVLYATDSYDTRD----TEIFYAFDTYTGKEEDVSI----P 213 (250)
T ss_pred -cEEEEeeCcccCceEEEEEe--ccCchhhc-ceeeEe-eEEEEEEECCCCC----cEEEEEEECCCCceeceee----e
Confidence 13344556654 46774 34444433 344444 5999997765331 3467899999887665543 3
Q ss_pred CCCCCCceEEEEecCCCcccEEEEEc
Q 013264 308 SLSPRGSTATITSYRLQQHQWLWFLG 333 (446)
Q Consensus 308 ~~~~r~~~~~~~~~~~~~~~~lyv~G 333 (446)
.+.+...++++..+- .+.+||+.-
T Consensus 214 f~~~~~~~~~l~YNP--~dk~LY~wd 237 (250)
T PF02191_consen 214 FPNPYGNISMLSYNP--RDKKLYAWD 237 (250)
T ss_pred eccccCceEeeeECC--CCCeEEEEE
Confidence 444545666665553 335888874
No 101
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=80.61 E-value=61 Score=31.86 Aligned_cols=135 Identities=10% Similarity=0.172 Sum_probs=71.6
Q ss_pred CCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccC-----CccC--ccceEE
Q 013264 140 NGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKP-----MSVA--RSFFAC 212 (446)
Q Consensus 140 ~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~-----~p~~--r~~~~~ 212 (446)
.+.|..+..+. .++. -.+ ..+|++|++.- ...++.+|. .- +-.++.+ +... ....-.
T Consensus 189 ~~~Wt~l~~~~---~~~~-DIi-~~kGkfYAvD~--------~G~l~~i~~--~l-~i~~v~~~i~~~~~~g~~~~~~yL 252 (373)
T PLN03215 189 GNVLKALKQMG---YHFS-DII-VHKGQTYALDS--------IGIVYWINS--DL-EFSRFGTSLDENITDGCWTGDRRF 252 (373)
T ss_pred CCeeeEccCCC---ceee-EEE-EECCEEEEEcC--------CCeEEEEec--CC-ceeeecceecccccCCcccCceeE
Confidence 48999997533 2332 233 47999999832 234666664 21 1112221 1111 122335
Q ss_pred EEECCcEEEEEeccCCCC-----------CCCCeEEEE--ECCCCcEEecCCCCccC-----CcceEEE------EECCE
Q 013264 213 AVVGASTVCVAGGHDGQK-----------NALKSAEVY--DVEADEWRMLPEMDEER-----DECQGVC------LEGDR 268 (446)
Q Consensus 213 ~~~~d~~iyv~GG~~~~~-----------~~~~~~~~y--d~~t~~W~~~~~~~~~r-----~~~~~~~------~~~~~ 268 (446)
+... |.++++....... .....+++| |.+..+|.++..+.... ..+.++. ..++.
T Consensus 253 VEs~-GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~Nc 331 (373)
T PLN03215 253 VECC-GELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNS 331 (373)
T ss_pred EEEC-CEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCE
Confidence 5566 7899888753211 012344555 77888999998875211 1111111 22467
Q ss_pred EEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 269 FFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 269 lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
||+.... ...+||.+.++=+.+.
T Consensus 332 IYFtdd~----------~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 332 IYFTEDT----------MPKVFKLDNGNGSSIE 354 (373)
T ss_pred EEEECCC----------cceEEECCCCCccceE
Confidence 7776332 4568888888754443
No 102
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=80.20 E-value=50 Score=30.57 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=44.5
Q ss_pred cEEEEEeccCCCCCCCCeEEEEECC-----CCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeC
Q 013264 218 STVCVAGGHDGQKNALKSAEVYDVE-----ADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDP 292 (446)
Q Consensus 218 ~~iyv~GG~~~~~~~~~~~~~yd~~-----t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~ 292 (446)
++||++.+..+. .++.|... .+...+.-.+|.+-.+ .+.++.+|.||.--. .++.|..||+
T Consensus 31 ~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~G-tG~vVYngslYY~~~--------~s~~IvkydL 96 (250)
T PF02191_consen 31 EKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPYPWQG-TGHVVYNGSLYYNKY--------NSRNIVKYDL 96 (250)
T ss_pred CCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEeceecc-CCeEEECCcEEEEec--------CCceEEEEEC
Confidence 689999886543 55555432 3334444455555555 678889999998644 2468999999
Q ss_pred CCCceE
Q 013264 293 KTGSWS 298 (446)
Q Consensus 293 ~~~~W~ 298 (446)
.+++=.
T Consensus 97 ~t~~v~ 102 (250)
T PF02191_consen 97 TTRSVV 102 (250)
T ss_pred cCCcEE
Confidence 998643
No 103
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=79.04 E-value=25 Score=28.54 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=53.7
Q ss_pred eCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccC---CccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEE-
Q 013264 164 ASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKP---MSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVY- 239 (446)
Q Consensus 164 ~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~---~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~y- 239 (446)
++|-||-+.-... ...+.+..||. .+.+|+.++. ..........+.++ |+|-++.-........-++|+.
T Consensus 4 inGvly~~a~~~~---~~~~~IvsFDv--~~E~f~~i~~P~~~~~~~~~~~L~~~~-G~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 4 INGVLYWLAWSED---SDNNVIVSFDV--RSEKFRFIKLPEDPYSSDCSSTLIEYK-GKLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred ECcEEEeEEEECC---CCCcEEEEEEc--CCceEEEEEeeeeeccccCccEEEEeC-CeEEEEEecCCCCcceEEEEEee
Confidence 5788888766511 13567899999 8899988754 23445566777888 8888876543321123567777
Q ss_pred ECCCCcEEec
Q 013264 240 DVEADEWRML 249 (446)
Q Consensus 240 d~~t~~W~~~ 249 (446)
|..+++|++.
T Consensus 78 D~~k~~Wsk~ 87 (129)
T PF08268_consen 78 DYEKQEWSKK 87 (129)
T ss_pred ccccceEEEE
Confidence 5667899966
No 104
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=78.89 E-value=45 Score=29.35 Aligned_cols=108 Identities=11% Similarity=0.112 Sum_probs=58.0
Q ss_pred eEEEEeeC-CEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEE---EccCCccCc--c-ceEEEEEC-CcEEEEEeccCCC
Q 013264 158 QCVAVPAS-RKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWR---RVKPMSVAR--S-FFACAVVG-ASTVCVAGGHDGQ 229 (446)
Q Consensus 158 ~~~~~~~~-~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~---~~~~~p~~r--~-~~~~~~~~-d~~iyv~GG~~~~ 229 (446)
.++..... +++|+|-|. ..|+||. .+.... .+.....+. . --++.... ++++|++.|
T Consensus 54 DAa~~~~~~~~~yfFkg~---------~yw~~~~--~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg---- 118 (194)
T cd00094 54 DAAFERPDTGKIYFFKGD---------KYWVYTG--KNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG---- 118 (194)
T ss_pred cEEEEECCCCEEEEECCC---------EEEEEcC--cccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC----
Confidence 44444223 899999652 5788877 331211 111111111 1 12233332 379999977
Q ss_pred CCCCCeEEEEECCCCcEEec---------CCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCc
Q 013264 230 KNALKSAEVYDVEADEWRML---------PEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGS 296 (446)
Q Consensus 230 ~~~~~~~~~yd~~t~~W~~~---------~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~ 296 (446)
+..++||..+++-..- +.+|.... ++....++++|++-|. ..+.||..+.+
T Consensus 119 ----~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~id--aa~~~~~~~~yfF~g~----------~y~~~d~~~~~ 178 (194)
T cd00094 119 ----DKYWRYDEKTQKMDPGYPKLIETDFPGVPDKVD--AAFRWLDGYYYFFKGD----------QYWRFDPRSKE 178 (194)
T ss_pred ----CEEEEEeCCCccccCCCCcchhhcCCCcCCCcc--eeEEeCCCcEEEEECC----------EEEEEeCccce
Confidence 4667888765543211 12232221 2333434899999773 68999998776
No 105
>smart00284 OLF Olfactomedin-like domains.
Probab=78.04 E-value=58 Score=30.14 Aligned_cols=147 Identities=13% Similarity=0.128 Sum_probs=77.9
Q ss_pred EEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccC----cc--------ceEEEEECCcEEEEEeccCC
Q 013264 161 AVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVA----RS--------FFACAVVGASTVCVAGGHDG 228 (446)
Q Consensus 161 ~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~----r~--------~~~~~~~~d~~iyv~GG~~~ 228 (446)
.++.+|.||.--. .+..+.+||+ .+++-.....+|.+ +. ..-.++-. +-|+|+=....
T Consensus 79 ~VVYngslYY~~~-------~s~~iiKydL--~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE-~GLWvIYat~~ 148 (255)
T smart00284 79 VVVYNGSLYFNKF-------NSHDICRFDL--TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDE-NGLWVIYATEQ 148 (255)
T ss_pred EEEECceEEEEec-------CCccEEEEEC--CCCcEEEEEecCccccccccccccCCCccEEEEEcC-CceEEEEeccC
Confidence 3447899988532 2467999999 66665433333322 11 12233433 56777744322
Q ss_pred CCCCCCeEEEEECCC----CcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcccCC
Q 013264 229 QKNALKSAEVYDVEA----DEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDHVW 304 (446)
Q Consensus 229 ~~~~~~~~~~yd~~t----~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 304 (446)
.. ..-.+-..|+.| ++|.. +.+....+ .+..+| |.||++-..... .....++||+.+++=..+..
T Consensus 149 ~~-g~ivvSkLnp~tL~ve~tW~T--~~~k~sa~-naFmvC-GvLY~~~s~~~~----~~~I~yayDt~t~~~~~~~i-- 217 (255)
T smart00284 149 NA-GKIVISKLNPATLTIENTWIT--TYNKRSAS-NAFMIC-GILYVTRSLGSK----GEKVFYAYDTNTGKEGHLDI-- 217 (255)
T ss_pred CC-CCEEEEeeCcccceEEEEEEc--CCCccccc-ccEEEe-eEEEEEccCCCC----CcEEEEEEECCCCccceeee--
Confidence 21 112334556654 46775 44443332 344444 599999542221 23457899999876433332
Q ss_pred CCCCCCCCCceEEEEecCCCcccEEEEE
Q 013264 305 PFPSLSPRGSTATITSYRLQQHQWLWFL 332 (446)
Q Consensus 305 p~~~~~~r~~~~~~~~~~~~~~~~lyv~ 332 (446)
+.+.+...++++-.+- .+++||+.
T Consensus 218 --~f~n~y~~~s~l~YNP--~d~~LY~w 241 (255)
T smart00284 218 --PFENMYEYISMLDYNP--NDRKLYAW 241 (255)
T ss_pred --eeccccccceeceeCC--CCCeEEEE
Confidence 3444445555554443 33578875
No 106
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=76.52 E-value=0.99 Score=46.64 Aligned_cols=45 Identities=18% Similarity=0.442 Sum_probs=40.4
Q ss_pred cCCCCCChHHHHHHHhcccCccchhhHHhcccchhhhcCChHHHH
Q 013264 14 QNLIPGLPDEIAMECLIRVPYKFHNDLKSVCQRWLNLISSHSFYR 58 (446)
Q Consensus 14 ~~~~~~LPddl~~~iLarlP~~~~~~~r~VcK~w~~li~s~~f~~ 58 (446)
...+..||-|+...||..|+...+..+++||+.|+.++.....+.
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 356789999999999999999999999999999999998776554
No 107
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=74.93 E-value=81 Score=32.37 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=63.4
Q ss_pred eeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCcc-----ceEEEEECCcEEEEEeccCCCCCCCCeEE
Q 013264 163 PASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARS-----FFACAVVGASTVCVAGGHDGQKNALKSAE 237 (446)
Q Consensus 163 ~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~-----~~~~~~~~d~~iyv~GG~~~~~~~~~~~~ 237 (446)
..++.||+.... ..++.+|..+.+..|+.-...+..+. ...+++.++++||+... ...+.
T Consensus 59 v~~g~vy~~~~~--------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~ 123 (488)
T cd00216 59 VVDGDMYFTTSH--------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLV 123 (488)
T ss_pred EECCEEEEeCCC--------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEE
Confidence 368999986431 35888898333456876433221111 11122322158877432 15788
Q ss_pred EEECCCC--cEEecCCCCc-cCC-cceEEEEECCEEEEEeCCCCCC-CCcccCcEEEEeCCCC--ceEE
Q 013264 238 VYDVEAD--EWRMLPEMDE-ERD-ECQGVCLEGDRFFVVSGYGTES-QGRFKPDAECYDPKTG--SWSK 299 (446)
Q Consensus 238 ~yd~~t~--~W~~~~~~~~-~r~-~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~v~~yd~~~~--~W~~ 299 (446)
.+|..|. .|+.-...+. ... ...+.++.++.+|+ |...... .......+++||.+++ .|+.
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 8998866 5886533221 000 01234566777665 3221110 0012347999999887 4865
No 108
>PRK02889 tolB translocation protein TolB; Provisional
Probab=74.85 E-value=97 Score=31.10 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=73.0
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCC-EEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASR-KLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~ 210 (446)
.++.+|..+++=..+...+. ...+....-++ .|++....++ ..++|.+|. .+...+++..-......
T Consensus 221 ~I~~~dl~~g~~~~l~~~~g----~~~~~~~SPDG~~la~~~~~~g-----~~~Iy~~d~--~~~~~~~lt~~~~~~~~- 288 (427)
T PRK02889 221 VVYVHDLATGRRRVVANFKG----SNSAPAWSPDGRTLAVALSRDG-----NSQIYTVNA--DGSGLRRLTQSSGIDTE- 288 (427)
T ss_pred EEEEEECCCCCEEEeecCCC----CccceEECCCCCEEEEEEccCC-----CceEEEEEC--CCCCcEECCCCCCCCcC-
Confidence 46777877766555544332 11122222344 4554443332 357999998 66666666432211111
Q ss_pred EEEEECCc-EEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEE
Q 013264 211 ACAVVGAS-TVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAEC 289 (446)
Q Consensus 211 ~~~~~~d~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~ 289 (446)
.....|+ +|+......+ ...++.+|..+++.+.+..-. .........-.+..|+......+ ...++.
T Consensus 289 -~~wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g------~~~I~v 356 (427)
T PRK02889 289 -PFFSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGG------AFKLYV 356 (427)
T ss_pred -eEEcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCC------cEEEEE
Confidence 2222234 4554432221 257888888887777664211 11111122222345554443222 126899
Q ss_pred EeCCCCceEEcc
Q 013264 290 YDPKTGSWSKFD 301 (446)
Q Consensus 290 yd~~~~~W~~~~ 301 (446)
+|+.+++...+.
T Consensus 357 ~d~~~g~~~~lt 368 (427)
T PRK02889 357 QDLATGQVTALT 368 (427)
T ss_pred EECCCCCeEEcc
Confidence 999988877665
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=74.71 E-value=70 Score=29.42 Aligned_cols=136 Identities=15% Similarity=0.071 Sum_probs=63.7
Q ss_pred eEEEEECCCCcEEe-cCCCCCCCCccceEEEEe-eCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccc
Q 013264 132 GLTIFNASNGTWER-IRPHVGRIPMFCQCVAVP-ASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSF 209 (446)
Q Consensus 132 ~~~~ydp~~~~W~~-l~~~~~~~p~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~ 209 (446)
.+..||..+.+... ++... .+ ...+.. .++.+|+.++. ...+.+||+ .+.+- +..++.....
T Consensus 54 ~v~~~d~~~~~~~~~~~~~~--~~---~~~~~~~~g~~l~~~~~~-------~~~l~~~d~--~~~~~--~~~~~~~~~~ 117 (300)
T TIGR03866 54 TIQVIDLATGEVIGTLPSGP--DP---ELFALHPNGKILYIANED-------DNLVTVIDI--ETRKV--LAEIPVGVEP 117 (300)
T ss_pred eEEEEECCCCcEEEeccCCC--Cc---cEEEECCCCCEEEEEcCC-------CCeEEEEEC--CCCeE--EeEeeCCCCc
Confidence 47788988876644 22211 11 122222 23456666542 236889999 55432 2222211112
Q ss_pred eEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEE
Q 013264 210 FACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAEC 289 (446)
Q Consensus 210 ~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~ 289 (446)
.+++...++++++++..+. ..+..||..+.+-....... .+.. ......+++.+++++.. ...+..
T Consensus 118 ~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~-------~~~v~i 183 (300)
T TIGR03866 118 EGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVD-QRPR-FAEFTADGKELWVSSEI-------GGTVSV 183 (300)
T ss_pred ceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcC-CCcc-EEEECCCCCEEEEEcCC-------CCEEEE
Confidence 3344444467776665321 34566787765432211111 1111 12222244433333321 236889
Q ss_pred EeCCCCce
Q 013264 290 YDPKTGSW 297 (446)
Q Consensus 290 yd~~~~~W 297 (446)
||+++.+.
T Consensus 184 ~d~~~~~~ 191 (300)
T TIGR03866 184 IDVATRKV 191 (300)
T ss_pred EEcCccee
Confidence 99988754
No 110
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=74.51 E-value=87 Score=30.37 Aligned_cols=124 Identities=12% Similarity=0.200 Sum_probs=64.7
Q ss_pred eEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEc---cCCccC---c-cceEEEEECC-cEEEEEeccCCC
Q 013264 158 QCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRV---KPMSVA---R-SFFACAVVGA-STVCVAGGHDGQ 229 (446)
Q Consensus 158 ~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~---~~~p~~---r-~~~~~~~~~d-~~iyv~GG~~~~ 229 (446)
|.+....+..+||+.-. .+.+.+|+....+..++.+ +.+|.. . ....+++-.| ..|||.-..
T Consensus 196 h~~f~pdg~~~Yv~~e~-------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~--- 265 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNEL-------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG--- 265 (345)
T ss_dssp EEEE-TTSSEEEEEETT-------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT---
T ss_pred EEEEcCCcCEEEEecCC-------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc---
Confidence 33333345679998653 4456666551135555554 344322 1 2233334323 578886432
Q ss_pred CCCCCeEEEEEC--CCCcEEecCCCCccCCcceEEEE--ECCEEEEEeCCCCCCCCcccCcEEEE--eCCCCceEEccc
Q 013264 230 KNALKSAEVYDV--EADEWRMLPEMDEERDECQGVCL--EGDRFFVVSGYGTESQGRFKPDAECY--DPKTGSWSKFDH 302 (446)
Q Consensus 230 ~~~~~~~~~yd~--~t~~W~~~~~~~~~r~~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~v~~y--d~~~~~W~~~~~ 302 (446)
.+++-+|+. .+++-+.+...+..-..-..+++ .++.|||.... .+.|.+| |.+++.+..+..
T Consensus 266 ---~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~--------s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 266 ---SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD--------SNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp ---TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT--------TTEEEEEEEETTTTEEEEEEE
T ss_pred ---CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC--------CCeEEEEEEeCCCCcEEEecc
Confidence 367788876 45666666544431111122333 45577776543 2356665 667888888763
No 111
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=74.39 E-value=61 Score=28.53 Aligned_cols=135 Identities=13% Similarity=0.115 Sum_probs=66.6
Q ss_pred eCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCc--EEEc----cCCccCccceEEEEECC-cEEEEEeccCCCCCCCCeE
Q 013264 164 ASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSR--WRRV----KPMSVARSFFACAVVGA-STVCVAGGHDGQKNALKSA 236 (446)
Q Consensus 164 ~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~--W~~~----~~~p~~r~~~~~~~~~d-~~iyv~GG~~~~~~~~~~~ 236 (446)
..+++|+|-|. .+|+++. .... -+.+ +.+|. .--++....+ +++|++-| +..
T Consensus 15 ~~g~~y~FkG~---------~~w~~~~--~~~~~~p~~I~~~w~~~p~--~IDAa~~~~~~~~~yfFkg--------~~y 73 (194)
T cd00094 15 LRGELYFFKGR---------YFWRLSP--GKPPGSPFLISSFWPSLPS--PVDAAFERPDTGKIYFFKG--------DKY 73 (194)
T ss_pred eCCEEEEEeCC---------EEEEEeC--CCCCCCCeEhhhhCCCCCC--CccEEEEECCCCEEEEECC--------CEE
Confidence 46999999663 4677776 3111 1111 11221 1223333333 78999966 466
Q ss_pred EEEECCCCcEEe---cCCCCccC--CcceEEEEE--CCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEE-----cccCC
Q 013264 237 EVYDVEADEWRM---LPEMDEER--DECQGVCLE--GDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSK-----FDHVW 304 (446)
Q Consensus 237 ~~yd~~t~~W~~---~~~~~~~r--~~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~-----~~~~~ 304 (446)
++||..+..+.. +.....+. ....++... ++++|++.|. ..+.||..+++-.. +...+
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~----------~y~ry~~~~~~v~~~yP~~i~~~w 143 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD----------KYWRYDEKTQKMDPGYPKLIETDF 143 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC----------EEEEEeCCCccccCCCCcchhhcC
Confidence 777765422211 11111111 111233333 5799999873 57888876655421 11111
Q ss_pred CCCCCCCCCceEEEEecCCCcccEEEEEcCCC
Q 013264 305 PFPSLSPRGSTATITSYRLQQHQWLWFLGKEQ 336 (446)
Q Consensus 305 p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~ 336 (446)
+. .+..-.++....+ +++|+|-|..
T Consensus 144 ~g---~p~~idaa~~~~~----~~~yfF~g~~ 168 (194)
T cd00094 144 PG---VPDKVDAAFRWLD----GYYYFFKGDQ 168 (194)
T ss_pred CC---cCCCcceeEEeCC----CcEEEEECCE
Confidence 11 2222233344442 4899998864
No 112
>PRK04043 tolB translocation protein TolB; Provisional
Probab=72.64 E-value=59 Score=32.66 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=62.8
Q ss_pred CeEEEEeCcCCCCcEEEccCCccCccceEEEEECC-cEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceE
Q 013264 183 PDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGA-STVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQG 261 (446)
Q Consensus 183 ~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 261 (446)
.++|++|+ .+.+=+.+...+.. ......-.| .+|.+.-...+ ..+++++|..++.++.+...+..-.. ..
T Consensus 213 ~~Iyv~dl--~tg~~~~lt~~~g~--~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~~d~~-p~ 283 (419)
T PRK04043 213 PTLYKYNL--YTGKKEKIASSQGM--LVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPGIDVN-GN 283 (419)
T ss_pred CEEEEEEC--CCCcEEEEecCCCc--EEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCCccCc-cE
Confidence 37999999 77777776543221 111112223 45655543322 26899999999999988765431111 22
Q ss_pred EEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 262 VCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 262 ~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
..-.+.+||+.....+ ...++.+|+.+++.+++.
T Consensus 284 ~SPDG~~I~F~Sdr~g------~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 284 FVEDDKRIVFVSDRLG------YPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred ECCCCCEEEEEECCCC------CceEEEEECCCCCeEeCc
Confidence 2223447877754432 247999999999887775
No 113
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.93 E-value=1.1e+02 Score=30.47 Aligned_cols=69 Identities=10% Similarity=0.157 Sum_probs=36.8
Q ss_pred eCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCc-cCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECC
Q 013264 164 ASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMS-VARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVE 242 (446)
Q Consensus 164 ~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p-~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~ 242 (446)
.++.+|++|-. ..++.=+- .-++|++++..+ .+-......+++++.++++|.. ..+++=+-.
T Consensus 145 ~~~~g~~vG~~--------G~il~T~D--gG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~-------G~v~~S~D~ 207 (398)
T PLN00033 145 KGKEGWIIGKP--------AILLHTSD--GGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE-------GAIYVTSNA 207 (398)
T ss_pred ECCEEEEEcCc--------eEEEEEcC--CCCCceECccccCCCCCceEEEEECCCceEEEecc-------ceEEEECCC
Confidence 57788888532 12333333 468999885422 1212233444554568887732 233333334
Q ss_pred CCcEEec
Q 013264 243 ADEWRML 249 (446)
Q Consensus 243 t~~W~~~ 249 (446)
-.+|+.+
T Consensus 208 G~tW~~~ 214 (398)
T PLN00033 208 GRNWKAA 214 (398)
T ss_pred CCCceEc
Confidence 5689976
No 114
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=71.76 E-value=47 Score=34.08 Aligned_cols=120 Identities=18% Similarity=0.271 Sum_probs=63.6
Q ss_pred CCCccceEEEE-eeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEEC-CcEEEEEeccCCC
Q 013264 152 RIPMFCQCVAV-PASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVG-ASTVCVAGGHDGQ 229 (446)
Q Consensus 152 ~~p~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~-d~~iyv~GG~~~~ 229 (446)
++|+++.-.+. -..-.||+.|- .++||++|+ ...+|..- +..--...-++.++ -+.++++||.+
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs--------g~evYRlNL--EqGrfL~P--~~~~~~~lN~v~in~~hgLla~Gt~~-- 196 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS--------GSEVYRLNL--EQGRFLNP--FETDSGELNVVSINEEHGLLACGTED-- 196 (703)
T ss_pred ecCcCCccccccCCCccEEEeec--------CcceEEEEc--cccccccc--cccccccceeeeecCccceEEecccC--
Confidence 34555443332 12445777653 457999999 88887532 22111112222222 15688888854
Q ss_pred CCCCCeEEEEECCCCcEEe-------cCCCCccCC--cceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCc
Q 013264 230 KNALKSAEVYDVEADEWRM-------LPEMDEERD--ECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGS 296 (446)
Q Consensus 230 ~~~~~~~~~yd~~t~~W~~-------~~~~~~~r~--~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~ 296 (446)
..||.+|+.+.+=.. +.+.|..-. ...++.+-++-|-+--|.. ...++.||+.+.+
T Consensus 197 ----g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-------~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 197 ----GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-------TGSVLIYDLRASK 261 (703)
T ss_pred ----ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc-------CCcEEEEEcccCC
Confidence 578999988764321 122222111 1123344454666654543 2368999997754
No 115
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=68.99 E-value=93 Score=28.39 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=65.9
Q ss_pred eCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECC-cEEEEEeccCCCCCCCCeEEEEECC
Q 013264 164 ASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGA-STVCVAGGHDGQKNALKSAEVYDVE 242 (446)
Q Consensus 164 ~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d-~~iyv~GG~~~~~~~~~~~~~yd~~ 242 (446)
.++.-++.||.+ +.+++||. .|.+-.+. +...-...-++.+++ ..+.+-|+++ .++..+|..
T Consensus 69 ~Dnskf~s~GgD-------k~v~vwDV--~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD------~s~r~wDCR 131 (307)
T KOG0316|consen 69 SDNSKFASCGGD-------KAVQVWDV--NTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD------SSVRLWDCR 131 (307)
T ss_pred ccccccccCCCC-------ceEEEEEc--ccCeeeee--cccccceeeEEEecCcceEEEecccc------ceeEEEEcc
Confidence 455555555533 35889999 55542211 111111122344443 4555555554 578899999
Q ss_pred CCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCce
Q 013264 243 ADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSW 297 (446)
Q Consensus 243 t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W 297 (446)
+++-+.+.-+...+.+ ...+.+.+...|.|..++ .+-.||+..++-
T Consensus 132 S~s~ePiQildea~D~-V~Si~v~~heIvaGS~DG--------tvRtydiR~G~l 177 (307)
T KOG0316|consen 132 SRSFEPIQILDEAKDG-VSSIDVAEHEIVAGSVDG--------TVRTYDIRKGTL 177 (307)
T ss_pred cCCCCccchhhhhcCc-eeEEEecccEEEeeccCC--------cEEEEEeeccee
Confidence 9999988888888887 444555666666665443 588999987754
No 116
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=68.33 E-value=1.2e+02 Score=29.40 Aligned_cols=203 Identities=13% Similarity=0.107 Sum_probs=99.6
Q ss_pred ceeEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccc
Q 013264 130 QYGLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSF 209 (446)
Q Consensus 130 ~~~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~ 209 (446)
......||..+.++..+..... ......-+....++.||+...... ....+..|.....+.+.+.+...+.....
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~-~~~Ps~l~~~~~~~~LY~~~e~~~----~~g~v~~~~i~~~~g~L~~~~~~~~~g~~ 88 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAE-GENPSWLAVSPDGRRLYVVNEGSG----DSGGVSSYRIDPDTGTLTLLNSVPSGGSS 88 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEE-SSSECCEEE-TTSSEEEEEETTSS----TTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred cEEEEEEcCCCCCceEeeeecC-CCCCceEEEEeCCCEEEEEEcccc----CCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence 3456778889999987765321 111111222235788999865421 13355555552144678877666633333
Q ss_pred eEEEEE-CC-cEEEEEeccCCCCCCCCeEEEEECCCC-cEEec---------CCC--CccCCcceEEEEE--CCEEEEEe
Q 013264 210 FACAVV-GA-STVCVAGGHDGQKNALKSAEVYDVEAD-EWRML---------PEM--DEERDECQGVCLE--GDRFFVVS 273 (446)
Q Consensus 210 ~~~~~~-~d-~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~---------~~~--~~~r~~~~~~~~~--~~~lyv~G 273 (446)
.+-..+ .+ ..||+.- +. ...+.+|+...+ +=... .+- .......|.+.+. ++.+|+..
T Consensus 89 p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp EEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred cEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 333333 22 5666653 21 257788887764 21111 011 1122223555555 33677753
Q ss_pred CCCCCCCCcccCcEEEEeCCCCc--eEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC----Cc--eeEec
Q 013264 274 GYGTESQGRFKPDAECYDPKTGS--WSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ----NG--EVVKG 345 (446)
Q Consensus 274 G~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~----~~--~~~~W 345 (446)
- . .+.|+.|+...+. ....... ..+..-.-..++...+ ...+||....... +. +...+
T Consensus 163 l-G-------~D~v~~~~~~~~~~~l~~~~~~---~~~~G~GPRh~~f~pd---g~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 163 L-G-------ADRVYVYDIDDDTGKLTPVDSI---KVPPGSGPRHLAFSPD---GKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp T-T-------TTEEEEEEE-TTS-TEEEEEEE---ECSTTSSEEEEEE-TT---SSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred c-C-------CCEEEEEEEeCCCceEEEeecc---ccccCCCCcEEEEcCC---cCEEEEecCCCCcEEEEeecccCCce
Confidence 2 1 3478888887765 6553321 1222222222232222 1489999876654 11 12245
Q ss_pred eEEeeccCCCCc
Q 013264 346 KIVSSIVPLPKS 357 (446)
Q Consensus 346 ~~~~~~~~~p~~ 357 (446)
+.+.....+|..
T Consensus 229 ~~~~~~~~~~~~ 240 (345)
T PF10282_consen 229 TEIQTISTLPEG 240 (345)
T ss_dssp EEEEEEESCETT
T ss_pred eEEEEeeecccc
Confidence 566555456543
No 117
>PRK00178 tolB translocation protein TolB; Provisional
Probab=68.14 E-value=1.3e+02 Score=29.95 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=59.6
Q ss_pred CeEEEEeCcCCCCcEEEccCCccCccceEEEEECC-cEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceE
Q 013264 183 PDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGA-STVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQG 261 (446)
Q Consensus 183 ~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 261 (446)
..++++|+ .+.+-+.+...+..- .......| .+|++....++ ..++++||..+++.+.+..-...-.. ..
T Consensus 223 ~~l~~~~l--~~g~~~~l~~~~g~~--~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~ 293 (430)
T PRK00178 223 PRIFVQNL--DTGRREQITNFEGLN--GAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAIDTE-PF 293 (430)
T ss_pred CEEEEEEC--CCCCEEEccCCCCCc--CCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCCcCC-eE
Confidence 47999999 778777775543211 11222223 35554432222 15889999999998887653321111 11
Q ss_pred EEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 262 VCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 262 ~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
..-.+.+|++.....+ ...++.+|..+++++.+.
T Consensus 294 ~spDg~~i~f~s~~~g------~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 294 WGKDGRTLYFTSDRGG------KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred ECCCCCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence 1122345666543222 237899999999888775
No 118
>PLN00181 protein SPA1-RELATED; Provisional
Probab=67.25 E-value=2e+02 Score=31.58 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=52.2
Q ss_pred CCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEE--CCcEEEEEeccCCCCCCCCeEEEEECC
Q 013264 165 SRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVV--GASTVCVAGGHDGQKNALKSAEVYDVE 242 (446)
Q Consensus 165 ~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~--~d~~iyv~GG~~~~~~~~~~~~~yd~~ 242 (446)
++.+++.||.++ .+.+||. .+..- +..+... ....++.+ .++..++.|+.+ ..+.+||..
T Consensus 587 ~~~~L~Sgs~Dg-------~v~iWd~--~~~~~--~~~~~~~-~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDDG-------SVKLWSI--NQGVS--IGTIKTK-ANICCVQFPSESGRSLAFGSAD------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCCC-------EEEEEEC--CCCcE--EEEEecC-CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence 466777777543 5888888 44332 1111111 11222222 236677777643 478899987
Q ss_pred CCc--EEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCC
Q 013264 243 ADE--WRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTG 295 (446)
Q Consensus 243 t~~--W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~ 295 (446)
+.. ...+..- ......+...++..++.|+.++ .+..||+.+.
T Consensus 649 ~~~~~~~~~~~h---~~~V~~v~f~~~~~lvs~s~D~--------~ikiWd~~~~ 692 (793)
T PLN00181 649 NPKLPLCTMIGH---SKTVSYVRFVDSSTLVSSSTDN--------TLKLWDLSMS 692 (793)
T ss_pred CCCccceEecCC---CCCEEEEEEeCCCEEEEEECCC--------EEEEEeCCCC
Confidence 542 2221111 1111233344666666666432 5788888643
No 119
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=66.99 E-value=1.4e+02 Score=29.65 Aligned_cols=148 Identities=17% Similarity=0.295 Sum_probs=79.2
Q ss_pred eeEEEEECCCC-----cEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCc---EE-Ecc
Q 013264 131 YGLTIFNASNG-----TWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSR---WR-RVK 201 (446)
Q Consensus 131 ~~~~~ydp~~~-----~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~---W~-~~~ 201 (446)
..++..|.... .|..+.+-. +- ....+...++.+|+....+. ....+..++. .+.. |. .+.
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~---~~-~~~~v~~~~~~~yi~Tn~~a----~~~~l~~~~l--~~~~~~~~~~~l~ 321 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPRE---DG-VEYYVDHHGDRLYILTNDDA----PNGRLVAVDL--ADPSPAEWWTVLI 321 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESS---SS--EEEEEEETTEEEEEE-TT-----TT-EEEEEET--TSTSGGGEEEEEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCC---Cc-eEEEEEccCCEEEEeeCCCC----CCcEEEEecc--cccccccceeEEc
Confidence 45677777764 777765422 11 12223235889999876432 3457888888 4443 66 444
Q ss_pred CCccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECC-CCcEEecCCCCccCCcceEEE--EECCEEEE-EeCCCC
Q 013264 202 PMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVE-ADEWRMLPEMDEERDECQGVC--LEGDRFFV-VSGYGT 277 (446)
Q Consensus 202 ~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~r~~~~~~~--~~~~~lyv-~GG~~~ 277 (446)
+-......-.+.+.+ ++|++.--.+ ....+.+||.. +..-..++ +|.. ....+.. ...+.+++ +.+..
T Consensus 322 ~~~~~~~l~~~~~~~-~~Lvl~~~~~----~~~~l~v~~~~~~~~~~~~~-~p~~-g~v~~~~~~~~~~~~~~~~ss~~- 393 (414)
T PF02897_consen 322 PEDEDVSLEDVSLFK-DYLVLSYREN----GSSRLRVYDLDDGKESREIP-LPEA-GSVSGVSGDFDSDELRFSYSSFT- 393 (414)
T ss_dssp --SSSEEEEEEEEET-TEEEEEEEET----TEEEEEEEETT-TEEEEEEE-SSSS-SEEEEEES-TT-SEEEEEEEETT-
T ss_pred CCCCceeEEEEEEEC-CEEEEEEEEC----CccEEEEEECCCCcEEeeec-CCcc-eEEeccCCCCCCCEEEEEEeCCC-
Confidence 322223344455566 6887765443 34789999998 33333333 3321 1101111 11234444 45543
Q ss_pred CCCCcccCcEEEEeCCCCceEEcc
Q 013264 278 ESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 278 ~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
....++.||+.+++-+.+.
T Consensus 394 -----~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 394 -----TPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp -----EEEEEEEEETTTTCEEEEE
T ss_pred -----CCCEEEEEECCCCCEEEEE
Confidence 3568999999999877654
No 120
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=66.86 E-value=1.6e+02 Score=30.25 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=51.8
Q ss_pred eEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEEEeccCC-----------CCCCCCeEEEEECCCC--cEEecC
Q 013264 184 DVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDG-----------QKNALKSAEVYDVEAD--EWRMLP 250 (446)
Q Consensus 184 ~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~-----------~~~~~~~~~~yd~~t~--~W~~~~ 250 (446)
.++.+|..+-+..|+.-.. ....+... +.+|+...... .......+..+|..+. .|+.-.
T Consensus 312 ~l~ald~~tG~~~W~~~~~------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~ 384 (488)
T cd00216 312 FFYVLDRTTGKLISARPEV------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKRE 384 (488)
T ss_pred eEEEEECCCCcEeeEeEee------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeC
Confidence 5889999333344864321 11112222 56777432110 0112356788888776 488643
Q ss_pred CC-------CccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCc--eEE
Q 013264 251 EM-------DEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGS--WSK 299 (446)
Q Consensus 251 ~~-------~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~ 299 (446)
.. ..+... ...++.++.||+- ..+ ..++++|.++++ |+.
T Consensus 385 ~~~~~~~~~g~~~~~-~~~~~~g~~v~~g-~~d--------G~l~ald~~tG~~lW~~ 432 (488)
T cd00216 385 GTIRDSWNIGFPHWG-GSLATAGNLVFAG-AAD--------GYFRAFDATTGKELWKF 432 (488)
T ss_pred CccccccccCCcccC-cceEecCCeEEEE-CCC--------CeEEEEECCCCceeeEE
Confidence 20 012222 3445666666664 332 269999999885 764
No 121
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=65.89 E-value=82 Score=32.74 Aligned_cols=71 Identities=24% Similarity=0.367 Sum_probs=44.0
Q ss_pred EEECCcEEEEEeccCCCCCCCCeEEEEECCCC--cEEecCCCCccCC-------cceEEEEECCEEEEEeCCCCCCCCcc
Q 013264 213 AVVGASTVCVAGGHDGQKNALKSAEVYDVEAD--EWRMLPEMDEERD-------ECQGVCLEGDRFFVVSGYGTESQGRF 283 (446)
Q Consensus 213 ~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~r~-------~~~~~~~~~~~lyv~GG~~~~~~~~~ 283 (446)
++.+ ++||+.... ..++.+|..|. .|+.-...+.... ...++++.++++|+...
T Consensus 66 vv~~-g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--------- 128 (527)
T TIGR03075 66 LVVD-GVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--------- 128 (527)
T ss_pred EEEC-CEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---------
Confidence 4456 799986432 36788898875 5885443221110 01245677889887432
Q ss_pred cCcEEEEeCCCCc--eEEc
Q 013264 284 KPDAECYDPKTGS--WSKF 300 (446)
Q Consensus 284 ~~~v~~yd~~~~~--W~~~ 300 (446)
...++++|.++++ |+.-
T Consensus 129 dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEEEECCCCCEEeecc
Confidence 1369999998885 8653
No 122
>PF13013 F-box-like_2: F-box-like domain
Probab=63.02 E-value=5.4 Score=31.58 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=25.3
Q ss_pred CCCChHHHHHHHhcccCccchhhHHhccc
Q 013264 17 IPGLPDEIAMECLIRVPYKFHNDLKSVCQ 45 (446)
Q Consensus 17 ~~~LPddl~~~iLarlP~~~~~~~r~VcK 45 (446)
+..||+||++.|+-.-....+..+-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 78899999999999998888877777776
No 123
>PTZ00421 coronin; Provisional
Probab=62.55 E-value=1.9e+02 Score=29.74 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=35.3
Q ss_pred EEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEE-ECCEEEEEeCCCCCCCCcccCcEEEEeCCCCc
Q 013264 219 TVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCL-EGDRFFVVSGYGTESQGRFKPDAECYDPKTGS 296 (446)
Q Consensus 219 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~ 296 (446)
.+++.||.+ ..+.+||..+.+-.. .+........+++. .++.+.+.|+.++ .+..||+.+++
T Consensus 139 ~iLaSgs~D------gtVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~Dg--------~IrIwD~rsg~ 201 (493)
T PTZ00421 139 NVLASAGAD------MVVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKDK--------KLNIIDPRDGT 201 (493)
T ss_pred CEEEEEeCC------CEEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCCC--------EEEEEECCCCc
Confidence 466666653 468899988764321 11111111123333 2567777777543 68899998875
No 124
>PRK01742 tolB translocation protein TolB; Provisional
Probab=60.60 E-value=1.9e+02 Score=29.01 Aligned_cols=139 Identities=12% Similarity=0.142 Sum_probs=67.1
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCE-EEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRK-LLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF 210 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~ 210 (446)
.++.+|..+++-..+...+. ........-+++ |++....++ ..++|.+|. .+...+++..-... ..
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g----~~~~~~wSPDG~~La~~~~~~g-----~~~Iy~~d~--~~~~~~~lt~~~~~--~~ 295 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRG----HNGAPAFSPDGSRLAFASSKDG-----VLNIYVMGA--NGGTPSQLTSGAGN--NT 295 (429)
T ss_pred EEEEEeCCCCceEEEecCCC----ccCceeECCCCCEEEEEEecCC-----cEEEEEEEC--CCCCeEeeccCCCC--cC
Confidence 35667776665555544432 111222223554 444332222 235889998 77777666442211 11
Q ss_pred EEEEECCc-EEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEE
Q 013264 211 ACAVVGAS-TVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAEC 289 (446)
Q Consensus 211 ~~~~~~d~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~ 289 (446)
......|+ +|+......+. ..++.+|..+..=+.+... ... ....-.+..|++.++ +.+..
T Consensus 296 ~~~wSpDG~~i~f~s~~~g~----~~I~~~~~~~~~~~~l~~~---~~~-~~~SpDG~~ia~~~~----------~~i~~ 357 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSGS----PQVYRMSASGGGASLVGGR---GYS-AQISADGKTLVMING----------DNVVK 357 (429)
T ss_pred CEEECCCCCEEEEEECCCCC----ceEEEEECCCCCeEEecCC---CCC-ccCCCCCCEEEEEcC----------CCEEE
Confidence 22222234 45554332222 4667777665543333211 111 111122335555433 24777
Q ss_pred EeCCCCceEEcc
Q 013264 290 YDPKTGSWSKFD 301 (446)
Q Consensus 290 yd~~~~~W~~~~ 301 (446)
+|+.++++..+.
T Consensus 358 ~Dl~~g~~~~lt 369 (429)
T PRK01742 358 QDLTSGSTEVLS 369 (429)
T ss_pred EECCCCCeEEec
Confidence 999999888765
No 125
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=59.99 E-value=61 Score=32.90 Aligned_cols=112 Identities=17% Similarity=0.246 Sum_probs=61.4
Q ss_pred eEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEE
Q 013264 158 QCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAE 237 (446)
Q Consensus 158 ~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~ 237 (446)
.++++..++...++||.++ .+++|.+ ....-....-+...|...+.+.+..+--|++.|- ....+.
T Consensus 447 s~vAv~~~~~~vaVGG~Dg-------kvhvysl--~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D-----a~rkvv 512 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDG-------KVHVYSL--SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD-----ASRKVV 512 (603)
T ss_pred ceEEEcCCCCEEEEecccc-------eEEEEEe--cCCcccceeeeecccCCceEEEECCCCcEEEEec-----cCCcEE
Confidence 3444556777888888764 3788887 4444344444445555566666553333444332 335777
Q ss_pred EEECCCCcEEecCC--CCccCCcceEEEE-ECCEEEEEeCCCCCCCCcccCcEEEEeCCC
Q 013264 238 VYDVEADEWRMLPE--MDEERDECQGVCL-EGDRFFVVSGYGTESQGRFKPDAECYDPKT 294 (446)
Q Consensus 238 ~yd~~t~~W~~~~~--~~~~r~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~ 294 (446)
.||..++.= .... ...+|-. +++. -++++...|+.+ ..+++|+.+.
T Consensus 513 ~yd~~s~~~-~~~~w~FHtakI~--~~aWsP~n~~vATGSlD--------t~Viiysv~k 561 (603)
T KOG0318|consen 513 LYDVASREV-KTNRWAFHTAKIN--CVAWSPNNKLVATGSLD--------TNVIIYSVKK 561 (603)
T ss_pred EEEcccCce-ecceeeeeeeeEE--EEEeCCCceEEEecccc--------ceEEEEEccC
Confidence 888766532 1111 1233332 2332 256777777654 3688887754
No 126
>PRK04922 tolB translocation protein TolB; Provisional
Probab=56.30 E-value=2.2e+02 Score=28.51 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=58.6
Q ss_pred cCeEEEEeCcCCCCcEEEccCCccCccceEEEEECC-cEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcce
Q 013264 182 VPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGA-STVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQ 260 (446)
Q Consensus 182 ~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~ 260 (446)
...++++|. .+.+-+.+...+..-. +...-.| .+|++....++. .+++++|..+++-+.+..-...... .
T Consensus 227 ~~~l~~~dl--~~g~~~~l~~~~g~~~--~~~~SpDG~~l~~~~s~~g~----~~Iy~~d~~~g~~~~lt~~~~~~~~-~ 297 (433)
T PRK04922 227 RSAIYVQDL--ATGQRELVASFRGING--APSFSPDGRRLALTLSRDGN----PEIYVMDLGSRQLTRLTNHFGIDTE-P 297 (433)
T ss_pred CcEEEEEEC--CCCCEEEeccCCCCcc--CceECCCCCEEEEEEeCCCC----ceEEEEECCCCCeEECccCCCCccc-e
Confidence 346999999 7787777765543211 1222223 456554433222 5799999999887766543221111 1
Q ss_pred EEEEECC-EEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 261 GVCLEGD-RFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 261 ~~~~~~~-~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
...-++ +|++.....+ ...++.+|..+++.+.+.
T Consensus 298 -~~spDG~~l~f~sd~~g------~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 298 -TWAPDGKSIYFTSDRGG------RPQIYRVAASGGSAERLT 332 (433)
T ss_pred -EECCCCCEEEEEECCCC------CceEEEEECCCCCeEEee
Confidence 222234 4555433222 136899999888887765
No 127
>PRK05137 tolB translocation protein TolB; Provisional
Probab=55.85 E-value=2.3e+02 Score=28.46 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=59.0
Q ss_pred CeEEEEeCcCCCCcEEEccCCccCccceEEEEECCc-EEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceE
Q 013264 183 PDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGAS-TVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQG 261 (446)
Q Consensus 183 ~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 261 (446)
..++++|+ .+.+.+.+...+..-... ..-.|+ +|++....++ ..+++++|..++.-+.+...+..... ..
T Consensus 226 ~~i~~~dl--~~g~~~~l~~~~g~~~~~--~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~~~-~~ 296 (435)
T PRK05137 226 PRVYLLDL--ETGQRELVGNFPGMTFAP--RFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAIDTS-PS 296 (435)
T ss_pred CEEEEEEC--CCCcEEEeecCCCcccCc--EECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCccCc-ee
Confidence 57999999 778887776554322222 222234 5554443322 26789999999888777653322111 12
Q ss_pred EEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 262 VCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 262 ~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
..-.+.+|++.....+ ...++.+|..++..+.+.
T Consensus 297 ~spDG~~i~f~s~~~g------~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 297 YSPDGSQIVFESDRSG------SPQLYVMNADGSNPRRIS 330 (435)
T ss_pred EcCCCCEEEEEECCCC------CCeEEEEECCCCCeEEee
Confidence 2222334554432221 236899999888777765
No 128
>PTZ00420 coronin; Provisional
Probab=55.44 E-value=2.7e+02 Score=29.24 Aligned_cols=105 Identities=10% Similarity=0.201 Sum_probs=50.6
Q ss_pred EEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcE
Q 013264 167 KLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEW 246 (446)
Q Consensus 167 ~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 246 (446)
.+++.||.++ .+.+||. .+.+= +..+.....-.++....++.+++.++.+ ..+.+||+.+.+=
T Consensus 139 ~iLaSgS~Dg-------tIrIWDl--~tg~~--~~~i~~~~~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 139 YIMCSSGFDS-------FVNIWDI--ENEKR--AFQINMPKKLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEI 201 (568)
T ss_pred eEEEEEeCCC-------eEEEEEC--CCCcE--EEEEecCCcEEEEEECCCCCEEEEEecC------CEEEEEECCCCcE
Confidence 4555666543 5788998 54431 1111111122233333346777776543 4689999987642
Q ss_pred EecCCCCc--cCCcceEEEE----ECCEEEEEeCCCCCCCCcccCcEEEEeCCC
Q 013264 247 RMLPEMDE--ERDECQGVCL----EGDRFFVVSGYGTESQGRFKPDAECYDPKT 294 (446)
Q Consensus 247 ~~~~~~~~--~r~~~~~~~~----~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~ 294 (446)
+..+.. .......+.. .++...+.+|.+.. ....+..||+.+
T Consensus 202 --i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~----~~R~VkLWDlr~ 249 (568)
T PTZ00420 202 --ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN----NMREMKLWDLKN 249 (568)
T ss_pred --EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC----CccEEEEEECCC
Confidence 211111 1000011111 24455566665432 123688999874
No 129
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=54.81 E-value=3.1e+02 Score=31.41 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=45.2
Q ss_pred EEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCc----------c-CCcceEEEE-ECCEEEEEeCCCCC
Q 013264 211 ACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDE----------E-RDECQGVCL-EGDRFFVVSGYGTE 278 (446)
Q Consensus 211 ~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~----------~-r~~~~~~~~-~~~~lyv~GG~~~~ 278 (446)
++++..++.|||.-.. ...+.+||+.++....+..... . .....++++ -+|++||.-..+
T Consensus 808 Gvavd~dG~LYVADs~------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-- 879 (1057)
T PLN02919 808 GVLCAKDGQIYVADSY------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-- 879 (1057)
T ss_pred eeeEeCCCcEEEEECC------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC--
Confidence 4444445789998643 2678999999888776543211 0 011134444 367899986532
Q ss_pred CCCcccCcEEEEeCCCCc
Q 013264 279 SQGRFKPDAECYDPKTGS 296 (446)
Q Consensus 279 ~~~~~~~~v~~yd~~~~~ 296 (446)
+.|.++|+.+++
T Consensus 880 ------n~Irvid~~~~~ 891 (1057)
T PLN02919 880 ------SLIRYLDLNKGE 891 (1057)
T ss_pred ------CEEEEEECCCCc
Confidence 478999998875
No 130
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=53.22 E-value=2.6e+02 Score=28.30 Aligned_cols=37 Identities=11% Similarity=0.025 Sum_probs=23.0
Q ss_pred EEeCcCCCCcEEEccCCc--cCcc--ceEEEEECCcEEEEEec
Q 013264 187 VLDMVNNSSRWRRVKPMS--VARS--FFACAVVGASTVCVAGG 225 (446)
Q Consensus 187 ~~d~~~~t~~W~~~~~~p--~~r~--~~~~~~~~d~~iyv~GG 225 (446)
++.| .-+.|..+..+. .-.+ .|.++.-.|+.||..|=
T Consensus 90 ~~~P--~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~ 130 (476)
T COG5184 90 VDRP--QLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGD 130 (476)
T ss_pred ccCc--eecCcccccceeeEEeecCCceEEeecCCCCEEEecc
Confidence 6777 666666432221 2223 37777777789999983
No 131
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=52.99 E-value=2.3e+02 Score=27.70 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=66.1
Q ss_pred CEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEEEeccC---CCCCCCCeEEEEECC
Q 013264 166 RKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHD---GQKNALKSAEVYDVE 242 (446)
Q Consensus 166 ~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~---~~~~~~~~~~~yd~~ 242 (446)
..+||.-... ....+.+.++|. .+ ++.+...+.....+....-++..|||.-.+- ..+...+.+.+||..
T Consensus 13 ~~v~V~d~~~---~~~~~~v~ViD~--~~--~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 13 RRVYVLDPGH---FAATTQVYTIDG--EA--GRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CEEEEECCcc---cccCceEEEEEC--CC--CEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 4567764321 112378999999 44 4444444444433443333336899987732 222345889999999
Q ss_pred CCcEEe-cCCCCccCC-----c-ceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEE
Q 013264 243 ADEWRM-LPEMDEERD-----E-CQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSK 299 (446)
Q Consensus 243 t~~W~~-~~~~~~~r~-----~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 299 (446)
|.+=.. ++--+.||. . ..++.-.+..|||.-= + ..+.+-+.|.++++-..
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-~------p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-S------PSPAVGVVDLEGKAFVR 142 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-C------CCCEEEEEECCCCcEEE
Confidence 887552 222223331 1 1222223346787521 1 24689999999987544
No 132
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=52.39 E-value=2.5e+02 Score=27.98 Aligned_cols=118 Identities=5% Similarity=0.132 Sum_probs=62.7
Q ss_pred ceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEE
Q 013264 209 FFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAE 288 (446)
Q Consensus 209 ~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~ 288 (446)
..++++..||-|+..|-.+ ..+-+||..+.. .++.+|..-....+..+.++--|+.-+.+. .+|.
T Consensus 350 ~ts~~fHpDgLifgtgt~d------~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add-------~~V~ 414 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD------GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD-------GSVK 414 (506)
T ss_pred eEEeeEcCCceEEeccCCC------ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC-------CeEE
Confidence 3444455567776665433 467889988876 566665422211233333333344433322 2489
Q ss_pred EEeCCCCc-eEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCCC----CceeEeceEEeec
Q 013264 289 CYDPKTGS-WSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQQ----NGEVVKGKIVSSI 351 (446)
Q Consensus 289 ~yd~~~~~-W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~~----~~~~~~W~~~~~~ 351 (446)
.+|+...+ ...++ .+... ......++. .+..++++|.+-. .-.+..|+.+...
T Consensus 415 lwDLRKl~n~kt~~------l~~~~-~v~s~~fD~---SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 415 LWDLRKLKNFKTIQ------LDEKK-EVNSLSFDQ---SGTYLGIAGSDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred EEEehhhcccceee------ccccc-cceeEEEcC---CCCeEEeecceeEEEEEecccccceeeehh
Confidence 99998765 22222 22222 233344443 4678888876543 2234578887754
No 133
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=51.86 E-value=2.2e+02 Score=27.11 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=47.3
Q ss_pred CeEEEEECCCC-----cEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCc-eEEcccCCCCC
Q 013264 234 KSAEVYDVEAD-----EWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGS-WSKFDHVWPFP 307 (446)
Q Consensus 234 ~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~p~~ 307 (446)
..+.+|+..+. +.+.+......- ...+++.++++|.+.-| +.+..|+...++ +...+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g-~V~ai~~~~~~lv~~~g----------~~l~v~~l~~~~~l~~~~~----- 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKG-PVTAICSFNGRLVVAVG----------NKLYVYDLDNSKTLLKKAF----- 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS--EEEEEEETTEEEEEET----------TEEEEEEEETTSSEEEEEE-----
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecC-cceEhhhhCCEEEEeec----------CEEEEEEccCcccchhhhe-----
Confidence 67899998885 566554433322 23677778999777655 268899998888 888774
Q ss_pred CCCCCCceEEEEecC
Q 013264 308 SLSPRGSTATITSYR 322 (446)
Q Consensus 308 ~~~~r~~~~~~~~~~ 322 (446)
...+-...+..+.++
T Consensus 126 ~~~~~~i~sl~~~~~ 140 (321)
T PF03178_consen 126 YDSPFYITSLSVFKN 140 (321)
T ss_dssp E-BSSSEEEEEEETT
T ss_pred ecceEEEEEEecccc
Confidence 323335555555565
No 134
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=50.75 E-value=29 Score=21.48 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=16.7
Q ss_pred eEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCC
Q 013264 260 QGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKT 294 (446)
Q Consensus 260 ~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~ 294 (446)
.+.++.++.+|+.+.. ..++++|+++
T Consensus 15 ~~~~v~~g~vyv~~~d---------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD---------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT---------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC---------CEEEEEeCCC
Confidence 3457778899887652 2799999875
No 135
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=50.48 E-value=2.7e+02 Score=27.78 Aligned_cols=119 Identities=14% Similarity=0.211 Sum_probs=62.5
Q ss_pred eEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEE
Q 013264 158 QCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAE 237 (446)
Q Consensus 158 ~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~ 237 (446)
++++.--+|.||..|-.+ ..+-+||. .... .++..|..-.-.....+.+|--|++-+.++ .+|.
T Consensus 351 ts~~fHpDgLifgtgt~d-------~~vkiwdl--ks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add-----~~V~ 414 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPD-------GVVKIWDL--KSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD-----GSVK 414 (506)
T ss_pred EEeeEcCCceEEeccCCC-------ceEEEEEc--CCcc--ccccCCCCCCceeEEEeccCceEEEEEecC-----CeEE
Confidence 444443466666665433 35788999 4444 555555433333344444344455544432 3488
Q ss_pred EEECCCCcEEecCCCCccCC-cceEEEEE-CCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEccc
Q 013264 238 VYDVEADEWRMLPEMDEERD-ECQGVCLE-GDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDH 302 (446)
Q Consensus 238 ~yd~~t~~W~~~~~~~~~r~-~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 302 (446)
.+|.+..+ ..+..+.+-. ...+..+. -|+..+++|.+ -.|+.|+-.+.+|+++..
T Consensus 415 lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~--------l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 415 LWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD--------LQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEEehhhc--ccceeeccccccceeEEEcCCCCeEEeecce--------eEEEEEecccccceeeeh
Confidence 99987665 2222222211 11122221 23555555532 257778888999999974
No 136
>PTZ00421 coronin; Provisional
Probab=46.95 E-value=3.4e+02 Score=27.92 Aligned_cols=116 Identities=11% Similarity=0.204 Sum_probs=54.4
Q ss_pred eeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcE-EEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEEC
Q 013264 163 PASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRW-RRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDV 241 (446)
Q Consensus 163 ~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W-~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~ 241 (446)
..++.+++.|+.++ .+.+||+ .+.+- ..+..-...+. ..+....++..++..|.+... -..+.+||.
T Consensus 177 spdG~lLatgs~Dg-------~IrIwD~--rsg~~v~tl~~H~~~~~-~~~~w~~~~~~ivt~G~s~s~--Dr~VklWDl 244 (493)
T PTZ00421 177 NLDGSLLCTTSKDK-------KLNIIDP--RDGTIVSSVEAHASAKS-QRCLWAKRKDLIITLGCSKSQ--QRQIMLWDT 244 (493)
T ss_pred ECCCCEEEEecCCC-------EEEEEEC--CCCcEEEEEecCCCCcc-eEEEEcCCCCeEEEEecCCCC--CCeEEEEeC
Confidence 34677778877543 5889999 65542 12211111111 112222223344444543221 267899998
Q ss_pred CCCc--EEecCCCCccCCcceEEEEE--CCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEc
Q 013264 242 EADE--WRMLPEMDEERDECQGVCLE--GDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKF 300 (446)
Q Consensus 242 ~t~~--W~~~~~~~~~r~~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~ 300 (446)
.+.. .... ..... .. ..+..+ ++.+++.||.+. ..|..||..+++....
T Consensus 245 r~~~~p~~~~-~~d~~-~~-~~~~~~d~d~~~L~lggkgD-------g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 245 RKMASPYSTV-DLDQS-SA-LFIPFFDEDTNLLYIGSKGE-------GNIRCFELMNERLTFC 297 (493)
T ss_pred CCCCCceeEe-ccCCC-Cc-eEEEEEcCCCCEEEEEEeCC-------CeEEEEEeeCCceEEE
Confidence 6533 1111 01110 01 112222 345555555322 2588899988776543
No 137
>PLN00181 protein SPA1-RELATED; Provisional
Probab=46.87 E-value=4.3e+02 Score=29.01 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=33.7
Q ss_pred cEEEEEeccCCCCCCCCeEEEEECCCCcEE-ecCCCCccCCcceEEEE--ECCEEEEEeCCCCCCCCcccCcEEEEeCCC
Q 013264 218 STVCVAGGHDGQKNALKSAEVYDVEADEWR-MLPEMDEERDECQGVCL--EGDRFFVVSGYGTESQGRFKPDAECYDPKT 294 (446)
Q Consensus 218 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~r~~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~ 294 (446)
+.+++.||.+ ..+.+||..+..-. .+. . .....++.. .++.++++|+.++ .+..||+.+
T Consensus 588 ~~~L~Sgs~D------g~v~iWd~~~~~~~~~~~---~-~~~v~~v~~~~~~g~~latgs~dg--------~I~iwD~~~ 649 (793)
T PLN00181 588 PTLLASGSDD------GSVKLWSINQGVSIGTIK---T-KANICCVQFPSESGRSLAFGSADH--------KVYYYDLRN 649 (793)
T ss_pred CCEEEEEcCC------CEEEEEECCCCcEEEEEe---c-CCCeEEEEEeCCCCCEEEEEeCCC--------eEEEEECCC
Confidence 5677777654 46788998765321 111 1 111122222 2467777777542 689999876
Q ss_pred C
Q 013264 295 G 295 (446)
Q Consensus 295 ~ 295 (446)
.
T Consensus 650 ~ 650 (793)
T PLN00181 650 P 650 (793)
T ss_pred C
Confidence 4
No 138
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=46.71 E-value=4.3e+02 Score=28.97 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=23.2
Q ss_pred EEEEECCEEEEEeCCCCCC--CCcccCcEEEEeCCCCc--eEEc
Q 013264 261 GVCLEGDRFFVVSGYGTES--QGRFKPDAECYDPKTGS--WSKF 300 (446)
Q Consensus 261 ~~~~~~~~lyv~GG~~~~~--~~~~~~~v~~yd~~~~~--W~~~ 300 (446)
+-++.++.+|+ |+...+. .......+..||.+|++ |+.-
T Consensus 311 ~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 311 PPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred CCEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 34667887776 5432211 11234579999999984 7643
No 139
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=45.73 E-value=58 Score=31.49 Aligned_cols=70 Identities=17% Similarity=0.272 Sum_probs=39.4
Q ss_pred cEEEEEe---ccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECC---EEEEEeCCCCCCCCcccCcEEEEe
Q 013264 218 STVCVAG---GHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGD---RFFVVSGYGTESQGRFKPDAECYD 291 (446)
Q Consensus 218 ~~iyv~G---G~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~---~lyv~GG~~~~~~~~~~~~v~~yd 291 (446)
+++||.- +....+..-..+|+||+.|++=-.--++..+- .++.+..+ .||..-+.+ ..+++||
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~---~Si~Vsqd~~P~L~~~~~~~--------~~l~v~D 318 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPI---DSIAVSQDDKPLLYALSAGD--------GTLDVYD 318 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEE---SEEEEESSSS-EEEEEETTT--------TEEEEEE
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCcc---ceEEEccCCCcEEEEEcCCC--------CeEEEEe
Confidence 7999873 22233445688999999998644332332221 23444433 577654321 3799999
Q ss_pred CCCCceE
Q 013264 292 PKTGSWS 298 (446)
Q Consensus 292 ~~~~~W~ 298 (446)
..+++=.
T Consensus 319 ~~tGk~~ 325 (342)
T PF06433_consen 319 AATGKLV 325 (342)
T ss_dssp TTT--EE
T ss_pred CcCCcEE
Confidence 9998643
No 140
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=44.69 E-value=3.5e+02 Score=27.40 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=52.8
Q ss_pred eEEEEeCcCCCC--cEEEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceE
Q 013264 184 DVYVLDMVNNSS--RWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQG 261 (446)
Q Consensus 184 ~v~~~d~~~~t~--~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 261 (446)
.+.+||. ..+ .-+.+..+.... ++++...++.+++.|+.+ ..+.++|..+.+=...-....... .+
T Consensus 226 tiriwd~--~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D------~tvriWd~~~~~~~~~l~~hs~~i--s~ 293 (456)
T KOG0266|consen 226 TLRIWDL--KDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD------GTVRIWDVRTGECVRKLKGHSDGI--SG 293 (456)
T ss_pred eEEEeec--cCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC------CcEEEEeccCCeEEEeeeccCCce--EE
Confidence 5777777 333 233344333333 455555556788888765 577899988854333222112111 22
Q ss_pred EE-EECCEEEEEeCCCCCCCCcccCcEEEEeCCCCce
Q 013264 262 VC-LEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSW 297 (446)
Q Consensus 262 ~~-~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W 297 (446)
++ --++.+++.+.++ ..+.+||..++.-
T Consensus 294 ~~f~~d~~~l~s~s~d--------~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYD--------GTIRVWDLETGSK 322 (456)
T ss_pred EEECCCCCEEEEcCCC--------ccEEEEECCCCce
Confidence 22 2345666666543 3689999998874
No 141
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=44.64 E-value=13 Score=36.75 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=35.1
Q ss_pred CCCCCChHHHHHHHhcccCccchhhHHhcccchhhhcCCh
Q 013264 15 NLIPGLPDEIAMECLIRVPYKFHNDLKSVCQRWLNLISSH 54 (446)
Q Consensus 15 ~~~~~LPddl~~~iLarlP~~~~~~~r~VcK~w~~li~s~ 54 (446)
.+.-.||.|++.++++.|-..++.+.+.||+.|+-+..+.
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 3445699999999999999999999999999999887543
No 142
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=44.35 E-value=2.2e+02 Score=25.05 Aligned_cols=92 Identities=10% Similarity=0.188 Sum_probs=43.8
Q ss_pred eEEEEeCcCCCCcEEEccCCccCc-cceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEE
Q 013264 184 DVYVLDMVNNSSRWRRVKPMSVAR-SFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGV 262 (446)
Q Consensus 184 ~v~~~d~~~~t~~W~~~~~~p~~r-~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 262 (446)
.+.+||. .+.+ .+..+.... .-.++....+++.+++++.+ ..+.+||..+.+-... +........++
T Consensus 158 ~i~i~d~--~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~--~~~~~~~i~~~ 225 (289)
T cd00200 158 TIKLWDL--RTGK--CVATLTGHTGEVNSVAFSPDGEKLLSSSSD------GTIKLWDLSTGKCLGT--LRGHENGVNSV 225 (289)
T ss_pred cEEEEEc--cccc--cceeEecCccccceEEECCCcCEEEEecCC------CcEEEEECCCCceecc--hhhcCCceEEE
Confidence 5888998 4332 221221111 12233333334345555542 4688999876543322 21111111334
Q ss_pred EEEC-CEEEEEeCCCCCCCCcccCcEEEEeCCCC
Q 013264 263 CLEG-DRFFVVSGYGTESQGRFKPDAECYDPKTG 295 (446)
Q Consensus 263 ~~~~-~~lyv~GG~~~~~~~~~~~~v~~yd~~~~ 295 (446)
.... +.+++.++.+ ..+..||..+.
T Consensus 226 ~~~~~~~~~~~~~~~--------~~i~i~~~~~~ 251 (289)
T cd00200 226 AFSPDGYLLASGSED--------GTIRVWDLRTG 251 (289)
T ss_pred EEcCCCcEEEEEcCC--------CcEEEEEcCCc
Confidence 4444 4555555422 26889998764
No 143
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=44.24 E-value=1.5e+02 Score=27.39 Aligned_cols=130 Identities=10% Similarity=0.108 Sum_probs=67.6
Q ss_pred EEECC-CCcEEecCCCCCCCCccceEEEE-eeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEcc--CCccCccce
Q 013264 135 IFNAS-NGTWERIRPHVGRIPMFCQCVAV-PASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVK--PMSVARSFF 210 (446)
Q Consensus 135 ~ydp~-~~~W~~l~~~~~~~p~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~--~~p~~r~~~ 210 (446)
.|... -.+|+.....+. .....+.+.+ ..++.|+++-... .. ....+.+... .-.+|.... .+|.+....
T Consensus 138 ~~S~D~G~tW~~~~~~~~-~~~~~e~~~~~~~dG~l~~~~R~~-~~---~~~~~~~S~D-~G~TWs~~~~~~~~~~~~~~ 211 (275)
T PF13088_consen 138 YYSDDGGKTWSSGSPIPD-GQGECEPSIVELPDGRLLAVFRTE-GN---DDIYISRSTD-GGRTWSPPQPTNLPNPNSSI 211 (275)
T ss_dssp EEESSTTSSEEEEEECEC-SEEEEEEEEEEETTSEEEEEEEEC-SS---TEEEEEEESS-TTSS-EEEEEEECSSCCEEE
T ss_pred EEeCCCCceeeccccccc-cCCcceeEEEECCCCcEEEEEEcc-CC---CcEEEEEECC-CCCcCCCceecccCcccCCc
Confidence 34444 446988766631 2234444443 3577888886542 11 1223333331 356898754 455556566
Q ss_pred EEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccC---CcceEEEEE-CCEEEE
Q 013264 211 ACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEER---DECQGVCLE-GDRFFV 271 (446)
Q Consensus 211 ~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r---~~~~~~~~~-~~~lyv 271 (446)
....+.+++++++....... ..-.+.+-.-...+|.....+.... ....+++.. +++|||
T Consensus 212 ~~~~~~~g~~~~~~~~~~~r-~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 212 SLVRLSDGRLLLVYNNPDGR-SNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEECTTSEEEEEEECSSTS-EEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred eEEEcCCCCEEEEEECCCCC-CceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 66666668898888732221 1122222223367898765443322 233455554 569886
No 144
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=43.37 E-value=2.3e+02 Score=24.94 Aligned_cols=106 Identities=13% Similarity=0.233 Sum_probs=48.7
Q ss_pred CCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccce-EEEEECCcEEEEEeccCCCCCCCCeEEEEECCC
Q 013264 165 SRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFF-ACAVVGASTVCVAGGHDGQKNALKSAEVYDVEA 243 (446)
Q Consensus 165 ~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~-~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t 243 (446)
++.+++.++.+ ..+.+||. .+.+-.. .+....... ++....++++++.|..+ ..+.+||..+
T Consensus 104 ~~~~~~~~~~~-------~~i~~~~~--~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~ 166 (289)
T cd00200 104 DGRILSSSSRD-------KTIKVWDV--ETGKCLT--TLRGHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRT 166 (289)
T ss_pred CCCEEEEecCC-------CeEEEEEC--CCcEEEE--EeccCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccc
Confidence 34666666532 35889998 5333221 111111122 22333324454444312 4678899865
Q ss_pred CcEEecCCCCccCCcceEEEEE-CCEEEEEeCCCCCCCCcccCcEEEEeCCCCce
Q 013264 244 DEWRMLPEMDEERDECQGVCLE-GDRFFVVSGYGTESQGRFKPDAECYDPKTGSW 297 (446)
Q Consensus 244 ~~W~~~~~~~~~r~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W 297 (446)
.+=. ..+........++... +++.+++++.+ ..+..||..+.+-
T Consensus 167 ~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------~~i~i~d~~~~~~ 211 (289)
T cd00200 167 GKCV--ATLTGHTGEVNSVAFSPDGEKLLSSSSD--------GTIKLWDLSTGKC 211 (289)
T ss_pred cccc--eeEecCccccceEEECCCcCEEEEecCC--------CcEEEEECCCCce
Confidence 4311 1111111111233333 33345555532 2688999987543
No 145
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=42.74 E-value=5.7e+02 Score=29.28 Aligned_cols=115 Identities=12% Similarity=0.148 Sum_probs=63.3
Q ss_pred CCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCC----------c---cCccceEEEEECC-cEEEEEeccCCCC
Q 013264 165 SRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPM----------S---VARSFFACAVVGA-STVCVAGGHDGQK 230 (446)
Q Consensus 165 ~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~----------p---~~r~~~~~~~~~d-~~iyv~GG~~~~~ 230 (446)
++.|||.... .+.+++||+ .+.....+..- . .-..-.++++..+ +.|||.-..
T Consensus 694 ~g~LyVad~~-------~~~I~v~d~--~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~---- 760 (1057)
T PLN02919 694 NEKVYIAMAG-------QHQIWEYNI--SDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE---- 760 (1057)
T ss_pred CCeEEEEECC-------CCeEEEEEC--CCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC----
Confidence 6788887532 346888998 55554432110 0 0011223444433 459988543
Q ss_pred CCCCeEEEEECCCCcEEecC--C--CCc--------------cCC-cceEEEE-ECCEEEEEeCCCCCCCCcccCcEEEE
Q 013264 231 NALKSAEVYDVEADEWRMLP--E--MDE--------------ERD-ECQGVCL-EGDRFFVVSGYGTESQGRFKPDAECY 290 (446)
Q Consensus 231 ~~~~~~~~yd~~t~~W~~~~--~--~~~--------------~r~-~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~v~~y 290 (446)
.+.+.+||+.++.-+.+. . .+. ... .-.++++ -+|.|||....+ +.|.+|
T Consensus 761 --n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N--------~rIrvi 830 (1057)
T PLN02919 761 --SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN--------HKIKKL 830 (1057)
T ss_pred --CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC--------CEEEEE
Confidence 268899998876543221 0 000 000 0123333 356899986532 479999
Q ss_pred eCCCCceEEccc
Q 013264 291 DPKTGSWSKFDH 302 (446)
Q Consensus 291 d~~~~~W~~~~~ 302 (446)
|+.++....+..
T Consensus 831 D~~tg~v~tiaG 842 (1057)
T PLN02919 831 DPATKRVTTLAG 842 (1057)
T ss_pred ECCCCeEEEEec
Confidence 999988876653
No 146
>PTZ00420 coronin; Provisional
Probab=42.22 E-value=4.3e+02 Score=27.76 Aligned_cols=119 Identities=9% Similarity=0.122 Sum_probs=56.8
Q ss_pred EEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCcc--ceEEEEE----CCcEEEEEeccCCCCCCC
Q 013264 160 VAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARS--FFACAVV----GASTVCVAGGHDGQKNAL 233 (446)
Q Consensus 160 ~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~--~~~~~~~----~d~~iyv~GG~~~~~~~~ 233 (446)
+....++.+++.++.+ ..+.+||+ .+.+ .+..+..... ...+... .++..++.+|.+.. ..
T Consensus 173 lswspdG~lLat~s~D-------~~IrIwD~--Rsg~--~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~ 239 (568)
T PTZ00420 173 LKWNIKGNLLSGTCVG-------KHMHIIDP--RKQE--IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN--NM 239 (568)
T ss_pred EEECCCCCEEEEEecC-------CEEEEEEC--CCCc--EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC--Cc
Confidence 3333467777776643 35889999 5543 2222221110 0011111 23455666666543 22
Q ss_pred CeEEEEECCC-CcEEecCCCCccCCcceEEEEE---CCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 234 KSAEVYDVEA-DEWRMLPEMDEERDECQGVCLE---GDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 234 ~~~~~yd~~t-~~W~~~~~~~~~r~~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
..+.+||..+ .+-...-.+... .+ .-+... .+.+|+.|.-+ ..+..|+...+.-..+.
T Consensus 240 R~VkLWDlr~~~~pl~~~~ld~~-~~-~L~p~~D~~tg~l~lsGkGD--------~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 240 REMKLWDLKNTTSALVTMSIDNA-SA-PLIPHYDESTGLIYLIGKGD--------GNCRYYQHSLGSIRKVN 301 (568)
T ss_pred cEEEEEECCCCCCceEEEEecCC-cc-ceEEeeeCCCCCEEEEEECC--------CeEEEEEccCCcEEeec
Confidence 5789999874 211111011110 00 001122 36788877533 26888888777544444
No 147
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=41.36 E-value=3.2e+02 Score=25.95 Aligned_cols=143 Identities=9% Similarity=0.057 Sum_probs=65.2
Q ss_pred eEEEEECC-CCcEEecCCCCCCCCccceEEEEee-CCEEEEEeCcCCCCCCccCeEEEEeCcCCCCc--EEEccCCccCc
Q 013264 132 GLTIFNAS-NGTWERIRPHVGRIPMFCQCVAVPA-SRKLLLIGGWDPITLEPVPDVYVLDMVNNSSR--WRRVKPMSVAR 207 (446)
Q Consensus 132 ~~~~ydp~-~~~W~~l~~~~~~~p~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~--W~~~~~~p~~r 207 (446)
.+..|+.. .+++..+...+ .+...+..+... +..||+..-. .+.+.+||. .++. ...+...+...
T Consensus 58 ~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~-------~~~v~v~~~--~~~g~~~~~~~~~~~~~ 126 (330)
T PRK11028 58 RVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYN-------ANCVSVSPL--DKDGIPVAPIQIIEGLE 126 (330)
T ss_pred cEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcC-------CCeEEEEEE--CCCCCCCCceeeccCCC
Confidence 35556664 44565444333 111122333323 4456665421 346777877 4221 11222222222
Q ss_pred cceEEEEECC-cEEEEEeccCCCCCCCCeEEEEECCCCc-EEecC----CCCccCCcceEEEEEC--CEEEEEeCCCCCC
Q 013264 208 SFFACAVVGA-STVCVAGGHDGQKNALKSAEVYDVEADE-WRMLP----EMDEERDECQGVCLEG--DRFFVVSGYGTES 279 (446)
Q Consensus 208 ~~~~~~~~~d-~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~----~~~~~r~~~~~~~~~~--~~lyv~GG~~~~~ 279 (446)
..|.+++..+ ..+||..- ..+.+.+||..++. -.... ..+.... ...+++.. ..+|+....
T Consensus 127 ~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~-p~~~~~~pdg~~lyv~~~~---- 195 (330)
T PRK11028 127 GCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG-PRHMVFHPNQQYAYCVNEL---- 195 (330)
T ss_pred cccEeEeCCCCCEEEEeeC------CCCEEEEEEECCCCcccccCCCceecCCCCC-CceEEECCCCCEEEEEecC----
Confidence 3355444433 46666542 12688999987632 21100 1111111 12333333 378886432
Q ss_pred CCcccCcEEEEeCC--CCceEEc
Q 013264 280 QGRFKPDAECYDPK--TGSWSKF 300 (446)
Q Consensus 280 ~~~~~~~v~~yd~~--~~~W~~~ 300 (446)
.+.+.+||.. +++.+.+
T Consensus 196 ----~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 196 ----NSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred ----CCEEEEEEEeCCCCCEEEE
Confidence 3477888776 4555444
No 148
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=40.78 E-value=3e+02 Score=25.55 Aligned_cols=158 Identities=13% Similarity=0.197 Sum_probs=73.2
Q ss_pred eCCEEEEEeCc-CCCCCCccCeEEEEe-CcCCCCcEEEc--cCCcc-------CccceEEEEECCcEEEEEeccCCCCCC
Q 013264 164 ASRKLLLIGGW-DPITLEPVPDVYVLD-MVNNSSRWRRV--KPMSV-------ARSFFACAVVGASTVCVAGGHDGQKNA 232 (446)
Q Consensus 164 ~~~~lyv~GG~-~~~~~~~~~~v~~~d-~~~~t~~W~~~--~~~p~-------~r~~~~~~~~~d~~iyv~GG~~~~~~~ 232 (446)
++++||.+=-. .-.+. .+.....|| |+...+.|++. +..+. .-.-|+.+.++ +.-|.+|=.+++-..
T Consensus 83 ~~NRLfa~iEtR~~a~~-km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~-~~~fA~GyHnGD~sP 160 (367)
T PF12217_consen 83 VGNRLFAVIETRTVASN-KMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATID-DNQFAVGYHNGDVSP 160 (367)
T ss_dssp ETTEEEEEEEEEETTT---EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-S-SS-EEEEEEE-SSSS
T ss_pred ecceeeEEEeehhhhhh-hhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEec-CCceeEEeccCCCCc
Confidence 78999976322 11111 122334444 22256788764 33333 23457788888 455678766554322
Q ss_pred CCeEEEEECCCCcE--------EecC-CCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcccC
Q 013264 233 LKSAEVYDVEADEW--------RMLP-EMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDHV 303 (446)
Q Consensus 233 ~~~~~~yd~~t~~W--------~~~~-~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 303 (446)
-.--..|-+ +.| +.++ .....-. -.++-.++++||+...-.... ..-+.+..-+..-.+|+.+..
T Consensus 161 Re~G~~yfs--~~~~sp~~~vrr~i~sey~~~As-EPCvkyY~g~LyLtTRgt~~~--~~GS~L~rs~d~G~~w~slrf- 234 (367)
T PF12217_consen 161 RELGFLYFS--DAFASPGVFVRRIIPSEYERNAS-EPCVKYYDGVLYLTTRGTLPT--NPGSSLHRSDDNGQNWSSLRF- 234 (367)
T ss_dssp -EEEEEEET--TTTT-TT--EEEE--GGG-TTEE-EEEEEEETTEEEEEEEES-TT--S---EEEEESSTTSS-EEEE--
T ss_pred ceeeEEEec--ccccCCcceeeeechhhhccccc-cchhhhhCCEEEEEEcCcCCC--CCcceeeeecccCCchhhccc-
Confidence 122223322 222 1222 1111112 256678899999985432211 234567888888889998864
Q ss_pred CCCCCCCCCCceEEEEecCCCcccEEEEEcCCCC
Q 013264 304 WPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQ 337 (446)
Q Consensus 304 ~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~ 337 (446)
|-........-+.+++ .||+||-...
T Consensus 235 ---p~nvHhtnlPFakvgD-----~l~mFgsERA 260 (367)
T PF12217_consen 235 ---PNNVHHTNLPFAKVGD-----VLYMFGSERA 260 (367)
T ss_dssp ---TT---SS---EEEETT-----EEEEEEE-SS
T ss_pred ---cccccccCCCceeeCC-----EEEEEecccc
Confidence 3334445556677777 9999986543
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=39.95 E-value=2.7e+02 Score=28.39 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=36.9
Q ss_pred ceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEE
Q 013264 209 FFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAE 288 (446)
Q Consensus 209 ~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~ 288 (446)
+.+.+..+ .+|+|--|++ ..+..||+.+++=+..-....|. .++++.++--|++.|... ..++
T Consensus 213 gicfspsn-e~l~vsVG~D------kki~~yD~~s~~s~~~l~y~~Pl---stvaf~~~G~~L~aG~s~-------G~~i 275 (673)
T KOG4378|consen 213 GICFSPSN-EALLVSVGYD------KKINIYDIRSQASTDRLTYSHPL---STVAFSECGTYLCAGNSK-------GELI 275 (673)
T ss_pred cceecCCc-cceEEEeccc------ceEEEeecccccccceeeecCCc---ceeeecCCceEEEeecCC-------ceEE
Confidence 33444445 6888888875 57889998866544321111222 233333333344444322 2688
Q ss_pred EEeCCC
Q 013264 289 CYDPKT 294 (446)
Q Consensus 289 ~yd~~~ 294 (446)
.||+..
T Consensus 276 ~YD~R~ 281 (673)
T KOG4378|consen 276 AYDMRS 281 (673)
T ss_pred EEeccc
Confidence 888854
No 150
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.75 E-value=2.2e+02 Score=26.25 Aligned_cols=51 Identities=16% Similarity=0.304 Sum_probs=30.4
Q ss_pred CCCCcEEec--CCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCC-ceEEcc
Q 013264 241 VEADEWRML--PEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTG-SWSKFD 301 (446)
Q Consensus 241 ~~t~~W~~~--~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~-~W~~~~ 301 (446)
-+.++|+.. .++|.+... .+-...++-|=|.||. +.+.++-...+ +|.++.
T Consensus 242 ~e~e~wk~tll~~f~~~~w~-vSWS~sGn~LaVs~Gd---------Nkvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 242 EEYEPWKKTLLEEFPDVVWR-VSWSLSGNILAVSGGD---------NKVTLWKENVDGKWEEVG 295 (299)
T ss_pred CccCcccccccccCCcceEE-EEEeccccEEEEecCC---------cEEEEEEeCCCCcEEEcc
Confidence 345677633 455555543 4445556566666663 35777777654 999886
No 151
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=38.67 E-value=4.2e+02 Score=26.61 Aligned_cols=150 Identities=16% Similarity=0.182 Sum_probs=74.7
Q ss_pred ceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECC--cEEEEEeccCCCCCCCC
Q 013264 157 CQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGA--STVCVAGGHDGQKNALK 234 (446)
Q Consensus 157 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d--~~iyv~GG~~~~~~~~~ 234 (446)
..+.++..+++.+++||.+. .+.++|+ .+.+= +..+...|.......+.. +.+|..+- -.
T Consensus 205 il~~avS~Dgkylatgg~d~-------~v~Iw~~--~t~eh--v~~~~ghr~~V~~L~fr~gt~~lys~s~-------Dr 266 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGGRDR-------HVQIWDC--DTLEH--VKVFKGHRGAVSSLAFRKGTSELYSASA-------DR 266 (479)
T ss_pred eEEEEEcCCCcEEEecCCCc-------eEEEecC--cccch--hhcccccccceeeeeeecCccceeeeec-------CC
Confidence 34566778999999999643 5778888 44443 333444443333222221 45666542 13
Q ss_pred eEEEEECCCCcEEecCCCCccCCcceEE-EEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcccCCCCCCCCCCC
Q 013264 235 SAEVYDVEADEWRMLPEMDEERDECQGV-CLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDHVWPFPSLSPRG 313 (446)
Q Consensus 235 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~~~r~ 313 (446)
++-+|+....+.. ..+-.......+. +....+...+||.+. ++..|++...+ +.+- .+..-+
T Consensus 267 svkvw~~~~~s~v--etlyGHqd~v~~IdaL~reR~vtVGgrDr--------T~rlwKi~ees-qlif------rg~~~s 329 (479)
T KOG0299|consen 267 SVKVWSIDQLSYV--ETLYGHQDGVLGIDALSRERCVTVGGRDR--------TVRLWKIPEES-QLIF------RGGEGS 329 (479)
T ss_pred ceEEEehhHhHHH--HHHhCCccceeeechhcccceEEeccccc--------eeEEEeccccc-eeee------eCCCCC
Confidence 4455554332221 1111111110111 223457777888653 45666653321 1111 111223
Q ss_pred ceEEEEecCCCcccEEEEEcCCCCCCceeEeceEEe
Q 013264 314 STATITSYRLQQHQWLWFLGKEQQQNGEVVKGKIVS 349 (446)
Q Consensus 314 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~W~~~~ 349 (446)
.-+++.+++ .=||.|..++ ...-|..+.
T Consensus 330 idcv~~In~-----~HfvsGSdnG---~IaLWs~~K 357 (479)
T KOG0299|consen 330 IDCVAFIND-----EHFVSGSDNG---SIALWSLLK 357 (479)
T ss_pred eeeEEEecc-----cceeeccCCc---eEEEeeecc
Confidence 345566666 6788888776 566675543
No 152
>PRK02889 tolB translocation protein TolB; Provisional
Probab=38.38 E-value=4.2e+02 Score=26.49 Aligned_cols=103 Identities=21% Similarity=0.217 Sum_probs=55.2
Q ss_pred CeEEEEeCcCCCCcEEEccCCccCccceEEEEECCc-EEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceE
Q 013264 183 PDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGAS-TVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQG 261 (446)
Q Consensus 183 ~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 261 (446)
..++++|. .+.+=..+...+.. ..+...-.|+ +|++....++ ..+++.+|..+...+.+..-.. ... ..
T Consensus 220 ~~I~~~dl--~~g~~~~l~~~~g~--~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~-~~~-~~ 289 (427)
T PRK02889 220 PVVYVHDL--ATGRRRVVANFKGS--NSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSG-IDT-EP 289 (427)
T ss_pred cEEEEEEC--CCCCEEEeecCCCC--ccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCC-CCc-Ce
Confidence 46999999 66765555543321 1122222233 5655443332 2678899988877766644221 111 11
Q ss_pred EEEECC-EEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 262 VCLEGD-RFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 262 ~~~~~~-~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
...-++ +|++.....+ ...++.+|..++..+.+.
T Consensus 290 ~wSpDG~~l~f~s~~~g------~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 290 FFSPDGRSIYFTSDRGG------APQIYRMPASGGAAQRVT 324 (427)
T ss_pred EEcCCCCEEEEEecCCC------CcEEEEEECCCCceEEEe
Confidence 222244 5555433221 236888888887777665
No 153
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=37.77 E-value=4.5e+02 Score=26.63 Aligned_cols=113 Identities=17% Similarity=0.220 Sum_probs=59.8
Q ss_pred eEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEE-CCcEEEEEeccCCCCCCCCeE
Q 013264 158 QCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVV-GASTVCVAGGHDGQKNALKSA 236 (446)
Q Consensus 158 ~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~-~d~~iyv~GG~~~~~~~~~~~ 236 (446)
.+++....+.+++.|+.++ .+.++|. .+.+-.+. +........++.+ .|+.+++.+.++ ..+
T Consensus 250 ~~~~f~p~g~~i~Sgs~D~-------tvriWd~--~~~~~~~~--l~~hs~~is~~~f~~d~~~l~s~s~d------~~i 312 (456)
T KOG0266|consen 250 TSVAFSPDGNLLVSGSDDG-------TVRIWDV--RTGECVRK--LKGHSDGISGLAFSPDGNLLVSASYD------GTI 312 (456)
T ss_pred EEEEecCCCCEEEEecCCC-------cEEEEec--cCCeEEEe--eeccCCceEEEEECCCCCEEEEcCCC------ccE
Confidence 4455445668888888654 5889999 66443322 2222222222222 246777776542 578
Q ss_pred EEEECCCCcEE---ecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCC
Q 013264 237 EVYDVEADEWR---MLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTG 295 (446)
Q Consensus 237 ~~yd~~t~~W~---~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~ 295 (446)
.+||..+..=. .+.....+. -...+....+-.|++.+..+ +.+-.||+...
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d-------~~~~~w~l~~~ 366 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLD-------RTLKLWDLRSG 366 (456)
T ss_pred EEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCC-------CeEEEEEccCC
Confidence 89998887732 333222221 11233343444555555432 25666777654
No 154
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=34.65 E-value=6.2e+02 Score=27.37 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=35.4
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEc
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRV 200 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~ 200 (446)
.+.++|...-+=.+--..| .|....|+++...|.|.+.|+.+ .-++++++. .|.+-..+
T Consensus 415 tVRAwDlkRYrNfRTft~P--~p~QfscvavD~sGelV~AG~~d------~F~IfvWS~--qTGqllDi 473 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSP--EPIQFSCVAVDPSGELVCAGAQD------SFEIFVWSV--QTGQLLDI 473 (893)
T ss_pred eEEeeeecccceeeeecCC--CceeeeEEEEcCCCCEEEeeccc------eEEEEEEEe--ecCeeeeh
Confidence 4456666554433322233 35656666665559999999865 336788888 66665443
No 155
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=33.71 E-value=1.1e+02 Score=29.56 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=39.9
Q ss_pred eCCEEEEEe--CcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCc--EEEEEeccCCCCCCCCeEEEE
Q 013264 164 ASRKLLLIG--GWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGAS--TVCVAGGHDGQKNALKSAEVY 239 (446)
Q Consensus 164 ~~~~lyv~G--G~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~--~iyv~GG~~~~~~~~~~~~~y 239 (446)
..+.|||+- |..+....+...+|+||+ .+++- +...+.....-++.+-.|. .+|.+-+.+ ..+.+|
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~--~t~kr--v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~------~~l~v~ 317 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDL--KTHKR--VARIPLEHPIDSIAVSQDDKPLLYALSAGD------GTLDVY 317 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEET--TTTEE--EEEEEEEEEESEEEEESSSS-EEEEEETTT------TEEEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEEC--CCCeE--EEEEeCCCccceEEEccCCCcEEEEEcCCC------CeEEEE
Confidence 478999873 223333346778999999 66653 3333322222244444443 466553311 578999
Q ss_pred ECCCCcEE
Q 013264 240 DVEADEWR 247 (446)
Q Consensus 240 d~~t~~W~ 247 (446)
|..|++=.
T Consensus 318 D~~tGk~~ 325 (342)
T PF06433_consen 318 DAATGKLV 325 (342)
T ss_dssp ETTT--EE
T ss_pred eCcCCcEE
Confidence 99987543
No 156
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=33.48 E-value=4.6e+02 Score=25.50 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=76.8
Q ss_pred eEEEEECCCCc--EEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccc
Q 013264 132 GLTIFNASNGT--WERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSF 209 (446)
Q Consensus 132 ~~~~ydp~~~~--W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~ 209 (446)
.+.++|+.+.+ |....... .....+.....+|+||+-.. ++ .+++||..+.+..|..-.... .+.
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~---~~~~~~~~~~~~G~i~~g~~-~g-------~~y~ld~~~G~~~W~~~~~~~-~~~- 145 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGA---VAQLSGPILGSDGKIYVGSW-DG-------KLYALDASTGTLVWSRNVGGS-PYY- 145 (370)
T ss_pred cEEEEeCCCCcEEecccCcCc---ceeccCceEEeCCeEEEecc-cc-------eEEEEECCCCcEEEEEecCCC-eEE-
Confidence 47899999987 86544320 00111122224678766432 22 688999843566787654441 222
Q ss_pred eEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCC--cEEecCCC-CccCCcceEEEEECCEEEEEeCCCCCCCCcccCc
Q 013264 210 FACAVVGASTVCVAGGHDGQKNALKSAEVYDVEAD--EWRMLPEM-DEERDECQGVCLEGDRFFVVSGYGTESQGRFKPD 286 (446)
Q Consensus 210 ~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~-~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 286 (446)
.+.+++.++.+|+.. . ...+..+|..+. .|+.-.+. ...+.. ...++.++.+|+-..- . ...
T Consensus 146 ~~~~v~~~~~v~~~s---~----~g~~~al~~~tG~~~W~~~~~~~~~~~~~-~~~~~~~~~vy~~~~~-~------~~~ 210 (370)
T COG1520 146 ASPPVVGDGTVYVGT---D----DGHLYALNADTGTLKWTYETPAPLSLSIY-GSPAIASGTVYVGSDG-Y------DGI 210 (370)
T ss_pred ecCcEEcCcEEEEec---C----CCeEEEEEccCCcEEEEEecCCccccccc-cCceeecceEEEecCC-C------cce
Confidence 222344447777753 1 156778887754 68844332 122221 2333667788775321 0 126
Q ss_pred EEEEeCCCC--ceEE
Q 013264 287 AECYDPKTG--SWSK 299 (446)
Q Consensus 287 v~~yd~~~~--~W~~ 299 (446)
++.+|++++ .|+.
T Consensus 211 ~~a~~~~~G~~~w~~ 225 (370)
T COG1520 211 LYALNAEDGTLKWSQ 225 (370)
T ss_pred EEEEEccCCcEeeee
Confidence 899999877 4874
No 157
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=33.19 E-value=5.9e+02 Score=26.62 Aligned_cols=172 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred CcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCC-------ccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEE
Q 013264 217 ASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMD-------EERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAEC 289 (446)
Q Consensus 217 d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-------~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~ 289 (446)
+|.+|+--|..... |.-+.|+.+.+.+ .+-.- .=++..||++++--| |-.
T Consensus 201 ~Gd~y~RtGvs~~~----------P~GraW~~i~~~t~L~qISagPtg~-VwAvt~nG~vf~R~G------------VsR 257 (705)
T KOG3669|consen 201 SGDLYLRTGVSVDR----------PCGRAWKVICPYTDLSQISAGPTGV-VWAVTENGAVFYREG------------VSR 257 (705)
T ss_pred CCcEEEeccccCCC----------CCCceeeecCCCCccceEeecCcce-EEEEeeCCcEEEEec------------ccc
Q ss_pred EeCCCCceEEcccCCCCCCCCCCCceEEEEecC-----CCcccEEEEEcCCCCCCceeEeceEEeeccCCCCcCCCCCCC
Q 013264 290 YDPKTGSWSKFDHVWPFPSLSPRGSTATITSYR-----LQQHQWLWFLGKEQQQNGEVVKGKIVSSIVPLPKSVTEGSSS 364 (446)
Q Consensus 290 yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~-----~~~~~~lyv~GG~~~~~~~~~~W~~~~~~~~~p~~~~~~R~~ 364 (446)
.++.-+.|..+. .|..-...-++.++. .+.++++++--|..+..++.+.|.++......+-...+.-..
T Consensus 258 qNp~GdsWkdI~------tP~~a~~~v~iSvGt~t~Waldndg~lwfrrgii~~kpeg~h~~e~~~s~~~~v~tdq~isf 331 (705)
T KOG3669|consen 258 QNPEGDSWKDIV------TPRQALEPVCISVGTQTLWALDNDGNLWFRRGIISKKPEGDHDHEWQVSITDYVVTDQCISF 331 (705)
T ss_pred cCCCCchhhhcc------CcccccceEEEEeccceEEEEecCCcEEEEecccccCcccccccccccccccceEEecceee
Q ss_pred CeEEEeecccc-CCCceEEEEeccCCCCCCCCCccccccccccCCcceEEEEEeccCCCcCeeeecCCCCccccccccee
Q 013264 365 PCVSVTTLHNS-QQQQKVFVMTGNGGRGCSSSSALSSFICNECEGEGAFIMERDMSNGNIKWDHVHLPVGFSGFPCSASF 443 (446)
Q Consensus 365 ~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W~~~~~p~~~~~~~~~~~~ 443 (446)
-.++.-+.+.- ..+++|++--|.... ++....|+.+..++..-+..-+.-.
T Consensus 332 ~SV~~ndqVfaisa~~~i~~R~GVt~~----------------------------~P~Gk~w~liqc~~~wisv~~sgv~ 383 (705)
T KOG3669|consen 332 QSVIHNDQVFAISAQAKIEVREGVTDK----------------------------LPMGKWWQLIQCQPSWISVNNSGVW 383 (705)
T ss_pred EEEEecceEEEEecccceeeecccccc----------------------------CccccceeeeecCceeEeeecceEE
Q ss_pred Ee
Q 013264 444 LL 445 (446)
Q Consensus 444 ~~ 445 (446)
+.
T Consensus 384 i~ 385 (705)
T KOG3669|consen 384 IS 385 (705)
T ss_pred EE
No 158
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=31.43 E-value=26 Score=33.61 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=33.8
Q ss_pred CCCCCChHHHHHHHhcccC--------ccchhhHHhcccchhhhcCC
Q 013264 15 NLIPGLPDEIAMECLIRVP--------YKFHNDLKSVCQRWLNLISS 53 (446)
Q Consensus 15 ~~~~~LPddl~~~iLarlP--------~~~~~~~r~VcK~w~~li~s 53 (446)
..|..||.+++..|+-|+- +.....+..|||.|+.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 5889999999999999884 55788999999999998643
No 159
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=31.01 E-value=5.5e+02 Score=25.61 Aligned_cols=117 Identities=18% Similarity=0.300 Sum_probs=61.3
Q ss_pred ceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEc-cCCccCccceEEEEECCcEEEEEeccCCCCCCCCe
Q 013264 157 CQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRV-KPMSVARSFFACAVVGASTVCVAGGHDGQKNALKS 235 (446)
Q Consensus 157 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~-~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~ 235 (446)
-++.+.-.+|.|.+.||.+.-. -++|. .+.+-.-. .. .-+.-+++...-+|+-.+.||.+ +.
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~-------RvWDl--Rtgr~im~L~g--H~k~I~~V~fsPNGy~lATgs~D------nt 368 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLG-------RVWDL--RTGRCIMFLAG--HIKEILSVAFSPNGYHLATGSSD------NT 368 (459)
T ss_pred cceeEecCCCceeeccCccchh-------heeec--ccCcEEEEecc--cccceeeEeECCCceEEeecCCC------Cc
Confidence 3445555789999999986432 25677 55543322 22 22333455444457777777654 45
Q ss_pred EEEEECCCCcEEecCCCCccCCcceEEEE--ECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEccc
Q 013264 236 AEVYDVEADEWRMLPEMDEERDECQGVCL--EGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDH 302 (446)
Q Consensus 236 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 302 (446)
+-++|....+= +-.||.-..-...+-+ ..|++.+.+++++ .+-.| .+.+|..+..
T Consensus 369 ~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~--------t~kiW--s~~~~~~~ks 425 (459)
T KOG0272|consen 369 CKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASYDN--------TVKIW--STRTWSPLKS 425 (459)
T ss_pred EEEeeeccccc--ceecccccchhhheEecccCCeEEEEcccCc--------ceeee--cCCCcccchh
Confidence 66777654432 3333432221111222 2467777777643 34444 3455766663
No 160
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=28.64 E-value=6.4e+02 Score=25.68 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=57.2
Q ss_pred cCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCC--ccCCcc
Q 013264 182 VPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMD--EERDEC 259 (446)
Q Consensus 182 ~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~--~~r~~~ 259 (446)
-..+|+-.- ..++.+++-+|+..-+.. +.++ ++||.+.-.++-+ .++.-|..-+--++..+.. .+|.
T Consensus 205 rGklWis~d--~g~tFeK~vdl~~~vS~P--mIV~-~RvYFlsD~eG~G----nlYSvdldGkDlrrHTnFtdYY~R~-- 273 (668)
T COG4946 205 RGKLWISSD--GGKTFEKFVDLDGNVSSP--MIVG-ERVYFLSDHEGVG----NLYSVDLDGKDLRRHTNFTDYYPRN-- 273 (668)
T ss_pred cceEEEEec--CCcceeeeeecCCCcCCc--eEEc-ceEEEEecccCcc----ceEEeccCCchhhhcCCchhccccc--
Confidence 345666555 455777777776543332 4556 7999998766553 4555565544444333332 2232
Q ss_pred eEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCceEEccc
Q 013264 260 QGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFDH 302 (446)
Q Consensus 260 ~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 302 (446)
+-.+|+-.||-- -.+++.|||++++-+++..
T Consensus 274 ---~nsDGkrIvFq~---------~GdIylydP~td~lekldI 304 (668)
T COG4946 274 ---ANSDGKRIVFQN---------AGDIYLYDPETDSLEKLDI 304 (668)
T ss_pred ---cCCCCcEEEEec---------CCcEEEeCCCcCcceeeec
Confidence 122454444411 1279999999999998875
No 161
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=28.44 E-value=95 Score=17.92 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=13.3
Q ss_pred cceEEEEECCcEEEEEec
Q 013264 208 SFFACAVVGASTVCVAGG 225 (446)
Q Consensus 208 ~~~~~~~~~d~~iyv~GG 225 (446)
..|+++...++++|..|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 467888887899999985
No 162
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=28.40 E-value=3.3e+02 Score=28.29 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=54.2
Q ss_pred eeEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEE-c------cCC
Q 013264 131 YGLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRR-V------KPM 203 (446)
Q Consensus 131 ~~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~-~------~~~ 203 (446)
..++.+|...++|..--... .+-..++.+. --+.|+++||.++ .|..+|| .+++-.. + ++.
T Consensus 155 ~evYRlNLEqGrfL~P~~~~--~~~lN~v~in-~~hgLla~Gt~~g-------~VEfwDp--R~ksrv~~l~~~~~v~s~ 222 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETD--SGELNVVSIN-EEHGLLACGTEDG-------VVEFWDP--RDKSRVGTLDAASSVNSH 222 (703)
T ss_pred cceEEEEccccccccccccc--cccceeeeec-CccceEEecccCc-------eEEEecc--hhhhhheeeecccccCCC
Confidence 36788999999985432222 1222233332 4567888888644 5888999 5554322 1 223
Q ss_pred ccCccc--eEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCc
Q 013264 204 SVARSF--FACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADE 245 (446)
Q Consensus 204 p~~r~~--~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 245 (446)
|..-.. .++..+.|+-|-+.-|.. ...+.+||+.+.+
T Consensus 223 pg~~~~~svTal~F~d~gL~~aVGts-----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 223 PGGDAAPSVTALKFRDDGLHVAVGTS-----TGSVLIYDLRASK 261 (703)
T ss_pred ccccccCcceEEEecCCceeEEeecc-----CCcEEEEEcccCC
Confidence 322222 233344433455554542 3578999997764
No 163
>PRK01029 tolB translocation protein TolB; Provisional
Probab=28.12 E-value=6.2e+02 Score=25.35 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=37.6
Q ss_pred CeEEEEECCCCcEEecCCCCccCCcceEEEEECC-EEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 234 KSAEVYDVEADEWRMLPEMDEERDECQGVCLEGD-RFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 234 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
..+++||+.+++.+.+...+..... .. ..-++ .|++.....+ ...++.+|+.+++.+.+.
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~~~~~~~-p~-wSpDG~~L~f~~~~~g------~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTSPENKES-PS-WAIDSLHLVYSAGNSN------ESELYLISLITKKTRKIV 411 (428)
T ss_pred cEEEEEECCCCCeEEccCCCCCccc-eE-ECCCCCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence 5799999999998888643321111 12 22244 5555543222 247899999998887775
No 164
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=28.03 E-value=4.2e+02 Score=23.33 Aligned_cols=89 Identities=12% Similarity=0.215 Sum_probs=48.1
Q ss_pred CCccCeEEEEeCcCCCCcEEEccCCccC-ccceEEE-EECC-cEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCcc
Q 013264 179 LEPVPDVYVLDMVNNSSRWRRVKPMSVA-RSFFACA-VVGA-STVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEE 255 (446)
Q Consensus 179 ~~~~~~v~~~d~~~~t~~W~~~~~~p~~-r~~~~~~-~~~d-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 255 (446)
.+....+|++|. .++.|..+.--+.. ...+--+ =++| .-++++|..-+.-..-..+++|++.|+.=+.+-+...-
T Consensus 84 eEgiGkIYIkn~--~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dk 161 (200)
T PF15525_consen 84 EEGIGKIYIKNL--NNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDK 161 (200)
T ss_pred cccceeEEEEec--CCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeecccc
Confidence 345778999999 77887655221111 1222122 2233 34455553222211236899999999998888766443
Q ss_pred CCcceEEEEECCEE
Q 013264 256 RDECQGVCLEGDRF 269 (446)
Q Consensus 256 r~~~~~~~~~~~~l 269 (446)
......+...++.|
T Consensus 162 kqQVis~e~~gd~L 175 (200)
T PF15525_consen 162 KQQVISAEKNGDNL 175 (200)
T ss_pred ceeEEEEEEeCCEE
Confidence 32223334445543
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=27.62 E-value=6.2e+02 Score=25.55 Aligned_cols=10 Identities=0% Similarity=0.192 Sum_probs=6.6
Q ss_pred eCCEEEEEeC
Q 013264 164 ASRKLLLIGG 173 (446)
Q Consensus 164 ~~~~lyv~GG 173 (446)
.++.|=|+-+
T Consensus 389 ~D~~IRv~ds 398 (498)
T KOG4328|consen 389 QDNEIRVFDS 398 (498)
T ss_pred cCCceEEeec
Confidence 5667777765
No 166
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=27.57 E-value=3.4e+02 Score=26.29 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=50.0
Q ss_pred eEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEE
Q 013264 184 DVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVC 263 (446)
Q Consensus 184 ~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 263 (446)
++-++|. .|.+ .+-.+...+.+.++..+. +++.|-|..+ +++-.||.+.+.--++-.-.... .-+.
T Consensus 341 TikvW~~--st~e--fvRtl~gHkRGIAClQYr-~rlvVSGSSD------ntIRlwdi~~G~cLRvLeGHEeL---vRci 406 (499)
T KOG0281|consen 341 TIKVWST--STCE--FVRTLNGHKRGIACLQYR-DRLVVSGSSD------NTIRLWDIECGACLRVLEGHEEL---VRCI 406 (499)
T ss_pred eEEEEec--ccee--eehhhhcccccceehhcc-CeEEEecCCC------ceEEEEeccccHHHHHHhchHHh---hhhe
Confidence 5677777 4443 344456667788888898 7987776543 67888998776544332111111 1124
Q ss_pred EECCEEEEEeCCCC
Q 013264 264 LEGDRFFVVSGYGT 277 (446)
Q Consensus 264 ~~~~~lyv~GG~~~ 277 (446)
-++++-.|.|+|++
T Consensus 407 RFd~krIVSGaYDG 420 (499)
T KOG0281|consen 407 RFDNKRIVSGAYDG 420 (499)
T ss_pred eecCceeeeccccc
Confidence 46778788999876
No 167
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=26.98 E-value=6.7e+02 Score=25.31 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=33.0
Q ss_pred cceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceEEEEECCcEEEEEeccCC
Q 013264 156 FCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDG 228 (446)
Q Consensus 156 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~ 228 (446)
..++.+. .+...|++||.. ...+|.+.. .+..-..+- +..-+.--.....+|+..++.||.++
T Consensus 83 ~v~al~s-~n~G~~l~ag~i------~g~lYlWel--ssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 83 PVHALAS-SNLGYFLLAGTI------SGNLYLWEL--SSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred ceeeeec-CCCceEEEeecc------cCcEEEEEe--ccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCc
Confidence 3455554 567777887732 235777777 444422111 11111122334455678888888764
No 168
>PRK10115 protease 2; Provisional
Probab=26.91 E-value=8.3e+02 Score=26.38 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=66.8
Q ss_pred eCCEEEEEeCcCCCCCCccCeEEEEeCcCC-CCcEEEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECC
Q 013264 164 ASRKLLLIGGWDPITLEPVPDVYVLDMVNN-SSRWRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVE 242 (446)
Q Consensus 164 ~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~-t~~W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~ 242 (446)
.++.+|+.--.+. ....+...+. . +.+|+.+-+....+.--.+.... +.|++..-.++ ...++++|..
T Consensus 278 ~~~~ly~~tn~~~----~~~~l~~~~~--~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g----~~~l~~~~~~ 346 (686)
T PRK10115 278 YQHRFYLRSNRHG----KNFGLYRTRV--RDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRG----LTSLRQINRK 346 (686)
T ss_pred CCCEEEEEEcCCC----CCceEEEecC--CCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCC----EEEEEEEcCC
Confidence 5678888764432 2334677777 4 57898875442222222444455 67777654433 3568888877
Q ss_pred CCcEEecCCCCccCCcceEEEE----ECCEEEE-EeCCCCCCCCcccCcEEEEeCCCCceEEccc
Q 013264 243 ADEWRMLPEMDEERDECQGVCL----EGDRFFV-VSGYGTESQGRFKPDAECYDPKTGSWSKFDH 302 (446)
Q Consensus 243 t~~W~~~~~~~~~r~~~~~~~~----~~~~lyv-~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 302 (446)
++....+. ++.+... ..+.. .++.+++ +.+.. ....++.||+.+++|+.+..
T Consensus 347 ~~~~~~l~-~~~~~~~-~~~~~~~~~~~~~~~~~~ss~~------~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 347 TREVIGIA-FDDPAYV-TWIAYNPEPETSRLRYGYSSMT------TPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred CCceEEec-CCCCceE-eeecccCCCCCceEEEEEecCC------CCCEEEEEECCCCcEEEEEe
Confidence 66666554 1112111 11111 1233443 33332 35689999999999887763
No 169
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=26.80 E-value=2.8e+02 Score=25.99 Aligned_cols=59 Identities=12% Similarity=0.224 Sum_probs=35.2
Q ss_pred EECCcEEEEEeccCCCCC-CCCeEEEEECC-CCcEEecCCCCc-cCCcceEEEEECCEEEEEeCC
Q 013264 214 VVGASTVCVAGGHDGQKN-ALKSAEVYDVE-ADEWRMLPEMDE-ERDECQGVCLEGDRFFVVSGY 275 (446)
Q Consensus 214 ~~~d~~iyv~GG~~~~~~-~~~~~~~yd~~-t~~W~~~~~~~~-~r~~~~~~~~~~~~lyv~GG~ 275 (446)
... |+.+++|-...... ..+.|.-|.-. .++|+.++..+. .... .-++-+++.| |+||.
T Consensus 34 ~~~-Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqD-PF~t~I~gel-ifGGv 95 (298)
T PF08950_consen 34 EYN-GKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQD-PFVTRIQGEL-IFGGV 95 (298)
T ss_dssp EET-TEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EE-EEEEEETTEE-EEEEE
T ss_pred eEC-CEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecC-cceeeECCEE-EEeeE
Confidence 345 89888887665443 45677777665 899999987554 3333 5567778887 56774
No 170
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.38 E-value=5.1e+02 Score=23.42 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=57.2
Q ss_pred EEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEe
Q 013264 212 CAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYD 291 (446)
Q Consensus 212 ~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd 291 (446)
....+ ++||.--|.-+. +.+.++|..+.+=..-.+++.++...-+.+..++.+|...=..+ ..+.||
T Consensus 51 L~~~~-g~i~esTG~yg~----S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~eg--------vaf~~d 117 (262)
T COG3823 51 LEYLD-GHILESTGLYGF----SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEG--------VAFKYD 117 (262)
T ss_pred eeeeC-CEEEEecccccc----ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccc--------eeEEEC
Confidence 33444 788888776544 68899999866532223333345544678889999999854322 356676
Q ss_pred CCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCC
Q 013264 292 PKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKE 335 (446)
Q Consensus 292 ~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~ 335 (446)
..+ .+.+. ..+..-.+-+.+.-+. .|.+--|.
T Consensus 118 ~~t--~~~lg-----~~~y~GeGWgLt~d~~-----~LimsdGs 149 (262)
T COG3823 118 ADT--LEELG-----RFSYEGEGWGLTSDDK-----NLIMSDGS 149 (262)
T ss_pred hHH--hhhhc-----ccccCCcceeeecCCc-----ceEeeCCc
Confidence 644 34444 2233444555554443 55555554
No 171
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=24.97 E-value=5.9e+02 Score=24.06 Aligned_cols=229 Identities=14% Similarity=0.095 Sum_probs=113.9
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccC-CccCccce
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKP-MSVARSFF 210 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~-~p~~r~~~ 210 (446)
.+-..||.+.+=...+.-.+ -.-|.+++.-++..++.-+ ...+-++|+ .+..-++.+- ...+-.+.
T Consensus 84 aiGhLdP~tGev~~ypLg~G---a~Phgiv~gpdg~~Witd~--------~~aI~R~dp--kt~evt~f~lp~~~a~~nl 150 (353)
T COG4257 84 AIGHLDPATGEVETYPLGSG---ASPHGIVVGPDGSAWITDT--------GLAIGRLDP--KTLEVTRFPLPLEHADANL 150 (353)
T ss_pred cceecCCCCCceEEEecCCC---CCCceEEECCCCCeeEecC--------cceeEEecC--cccceEEeecccccCCCcc
Confidence 34567888887766655442 2335666656777777633 225788999 6666655532 11222333
Q ss_pred EEEEEC-CcEEEEEeccCCCCCCCCeEEEEECCCCcEEecC-CCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEE
Q 013264 211 ACAVVG-ASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLP-EMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAE 288 (446)
Q Consensus 211 ~~~~~~-d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~ 288 (446)
-.++++ +|.++..|-....+ +.||.++.=+..+ +....-++ -++.-+|.+|+..-. -+.+-
T Consensus 151 et~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfpaPqG~gpyG--i~atpdGsvwyasla--------gnaia 213 (353)
T COG4257 151 ETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFPAPQGGGPYG--ICATPDGSVWYASLA--------GNAIA 213 (353)
T ss_pred cceeeCCCccEEEeeccccce-------ecCcccCceeeeccCCCCCCcc--eEECCCCcEEEEecc--------ccceE
Confidence 344454 37788776533221 3334333322221 21222222 234457788886332 23577
Q ss_pred EEeCCCCceEEcccCCCCCCCCC-CCceEEEEecCCCcccEEEEEcCCCCC----CceeEeceEEeeccCCCCcCCCCCC
Q 013264 289 CYDPKTGSWSKFDHVWPFPSLSP-RGSTATITSYRLQQHQWLWFLGKEQQQ----NGEVVKGKIVSSIVPLPKSVTEGSS 363 (446)
Q Consensus 289 ~yd~~~~~W~~~~~~~p~~~~~~-r~~~~~~~~~~~~~~~~lyv~GG~~~~----~~~~~~W~~~~~~~~~p~~~~~~R~ 363 (446)
..|+.+..=++++. |.+ ..+.-.+.. +..+++++.-=..+. ++....|.+| ++|.....
T Consensus 214 ridp~~~~aev~p~------P~~~~~gsRriws---dpig~~wittwg~g~l~rfdPs~~sW~ey----pLPgs~ar--- 277 (353)
T COG4257 214 RIDPFAGHAEVVPQ------PNALKAGSRRIWS---DPIGRAWITTWGTGSLHRFDPSVTSWIEY----PLPGSKAR--- 277 (353)
T ss_pred EcccccCCcceecC------CCccccccccccc---CccCcEEEeccCCceeeEeCcccccceee----eCCCCCCC---
Confidence 78887775444442 222 111111111 122466665211111 5666779888 44432222
Q ss_pred CCeEEEeeccccCCCceEEEEeccCCCCCCCCCccccccccccCCcceEEEEEeccCCCcCeeeecCCCCccc
Q 013264 364 SPCVSVTTLHNSQQQQKVFVMTGNGGRGCSSSSALSSFICNECEGEGAFIMERDMSNGNIKWDHVHLPVGFSG 436 (446)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~~W~~~~~p~~~~~ 436 (446)
...+.+ +- .+++++-- .+.-.+.+| |+++.+.+.++.|..-.+
T Consensus 278 pys~rV-D~-----~grVW~se-----------------------a~agai~rf-dpeta~ftv~p~pr~n~g 320 (353)
T COG4257 278 PYSMRV-DR-----HGRVWLSE-----------------------ADAGAIGRF-DPETARFTVLPIPRPNSG 320 (353)
T ss_pred cceeee-cc-----CCcEEeec-----------------------cccCceeec-CcccceEEEecCCCCCCC
Confidence 222222 31 24555411 111224457 999999998887765544
No 172
>PRK03629 tolB translocation protein TolB; Provisional
Probab=24.83 E-value=7.1e+02 Score=24.89 Aligned_cols=103 Identities=12% Similarity=0.139 Sum_probs=56.9
Q ss_pred CeEEEEeCcCCCCcEEEccCCccCccceEEEEECCc-EEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCccCCcceE
Q 013264 183 PDVYVLDMVNNSSRWRRVKPMSVARSFFACAVVGAS-TVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEERDECQG 261 (446)
Q Consensus 183 ~~v~~~d~~~~t~~W~~~~~~p~~r~~~~~~~~~d~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 261 (446)
..++++|. .+.+-+.+...+..-. ....-.|+ +|++.....+. ..++++|..+++.+.+..-..... ..
T Consensus 223 ~~i~i~dl--~~G~~~~l~~~~~~~~--~~~~SPDG~~La~~~~~~g~----~~I~~~d~~tg~~~~lt~~~~~~~--~~ 292 (429)
T PRK03629 223 SALVIQTL--ANGAVRQVASFPRHNG--APAFSPDGSKLAFALSKTGS----LNLYVMDLASGQIRQVTDGRSNNT--EP 292 (429)
T ss_pred cEEEEEEC--CCCCeEEccCCCCCcC--CeEECCCCCEEEEEEcCCCC----cEEEEEECCCCCEEEccCCCCCcC--ce
Confidence 46899999 7777666655443211 12222234 56655433222 468999999988887754332111 11
Q ss_pred EEEECC-EEEEEeCCCCCCCCcccCcEEEEeCCCCceEEcc
Q 013264 262 VCLEGD-RFFVVSGYGTESQGRFKPDAECYDPKTGSWSKFD 301 (446)
Q Consensus 262 ~~~~~~-~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 301 (446)
...-++ .|++.....+ ...++.+|+.++.-+.+.
T Consensus 293 ~wSPDG~~I~f~s~~~g------~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAG------RPQVYKVNINGGAPQRIT 327 (429)
T ss_pred EECCCCCEEEEEeCCCC------CceEEEEECCCCCeEEee
Confidence 222244 4544432221 236888899888766664
No 173
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=24.67 E-value=6e+02 Score=24.02 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=88.1
Q ss_pred eEEEEECCCCcEEecCCCCCCCCccceEEEEeeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccCCccCccceE
Q 013264 132 GLTIFNASNGTWERIRPHVGRIPMFCQCVAVPASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKPMSVARSFFA 211 (446)
Q Consensus 132 ~~~~ydp~~~~W~~l~~~~~~~p~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~~p~~r~~~~ 211 (446)
.+.++|+++..-++.+......+-....++..-.+.|+..|- .+. -=+.|| .++.-+..+. |..-.-++
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~-------yGrLdP--a~~~i~vfpa-PqG~gpyG 193 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGA-------YGRLDP--ARNVISVFPA-PQGGGPYG 193 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-ccc-------ceecCc--ccCceeeecc-CCCCCCcc
Confidence 445566655554444332210011112333334556666653 211 115677 5555444433 34444566
Q ss_pred EEEECCcEEEEEeccCCCCCCCCeEEEEECCCCcEEecCCCCcc-CCcce-EEEEECCEEEEEeCCCCCCCCcccCcEEE
Q 013264 212 CAVVGASTVCVAGGHDGQKNALKSAEVYDVEADEWRMLPEMDEE-RDECQ-GVCLEGDRFFVVSGYGTESQGRFKPDAEC 289 (446)
Q Consensus 212 ~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~v~~ 289 (446)
+|+.-||.+|+..=.. +-+-..|+.+..=+.++. |.+ ..+.- .-+--.+.+++.-- -...++.
T Consensus 194 i~atpdGsvwyaslag------naiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wittw--------g~g~l~r 258 (353)
T COG4257 194 ICATPDGSVWYASLAG------NAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWITTW--------GTGSLHR 258 (353)
T ss_pred eEECCCCcEEEEeccc------cceEEcccccCCcceecC-CCcccccccccccCccCcEEEecc--------CCceeeE
Confidence 6766668898873221 445566776664444432 222 11100 11122456777521 1237999
Q ss_pred EeCCCCceEEcccCCCCCCCCCCCceEEEEecCCCcccEEEEEcCCCC----CCceeEeceEE
Q 013264 290 YDPKTGSWSKFDHVWPFPSLSPRGSTATITSYRLQQHQWLWFLGKEQQ----QNGEVVKGKIV 348 (446)
Q Consensus 290 yd~~~~~W~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~lyv~GG~~~----~~~~~~~W~~~ 348 (446)
|||.+..|.+-+- |...+|.... .+++ .++++.---..+ -++++.+.+.+
T Consensus 259 fdPs~~sW~eypL----Pgs~arpys~--rVD~---~grVW~sea~agai~rfdpeta~ftv~ 312 (353)
T COG4257 259 FDPSVTSWIEYPL----PGSKARPYSM--RVDR---HGRVWLSEADAGAIGRFDPETARFTVL 312 (353)
T ss_pred eCcccccceeeeC----CCCCCCccee--eecc---CCcEEeeccccCceeecCcccceEEEe
Confidence 9999999998762 3334444433 2332 237776322111 16666666655
No 174
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=23.57 E-value=1e+03 Score=26.19 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=21.2
Q ss_pred EEECCcEEEEEeccCCCCCCCCeEEEEECCCC--cEEecCCC
Q 013264 213 AVVGASTVCVAGGHDGQKNALKSAEVYDVEAD--EWRMLPEM 252 (446)
Q Consensus 213 ~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~ 252 (446)
++++ ++||+.... +.+..+|..|. .|+.-+..
T Consensus 191 lvvg-g~lYv~t~~-------~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 191 LKVG-DTLYLCTPH-------NKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred EEEC-CEEEEECCC-------CeEEEEECCCCcEEEEEcCCC
Confidence 4566 799997432 56788887765 47765443
No 175
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=23.56 E-value=45 Score=25.57 Aligned_cols=25 Identities=28% Similarity=0.134 Sum_probs=21.9
Q ss_pred CCCCCChHHHHHHHhcccCccchhh
Q 013264 15 NLIPGLPDEIAMECLIRVPYKFHND 39 (446)
Q Consensus 15 ~~~~~LPddl~~~iLarlP~~~~~~ 39 (446)
..|..||.|+-..||..|+-.++-.
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 7899999999999999998776644
No 176
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=23.16 E-value=3.5e+02 Score=27.35 Aligned_cols=104 Identities=17% Similarity=0.257 Sum_probs=50.9
Q ss_pred CCEEEEEeCcCCCCCCccCeEEEEeCcCCCCcEEEccC-CccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCC
Q 013264 165 SRKLLLIGGWDPITLEPVPDVYVLDMVNNSSRWRRVKP-MSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEA 243 (446)
Q Consensus 165 ~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~W~~~~~-~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t 243 (446)
.+.|++-||.++ .+++||. -... +.+-. |-..+.--.++.-.++.-++-.|++ ..+-.+|.+|
T Consensus 226 ~~hLlLS~gmD~-------~vklW~v--y~~~-~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD------~~lKlwDtET 289 (503)
T KOG0282|consen 226 KGHLLLSGGMDG-------LVKLWNV--YDDR-RCLRTFKGHRKPVRDASFNNCGTSFLSASFD------RFLKLWDTET 289 (503)
T ss_pred eeeEEEecCCCc-------eEEEEEE--ecCc-ceehhhhcchhhhhhhhccccCCeeeeeecc------eeeeeecccc
Confidence 577888888764 3666666 2211 11111 1111100011111235566666664 3456778888
Q ss_pred CcEEec---CCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCc
Q 013264 244 DEWRML---PEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGS 296 (446)
Q Consensus 244 ~~W~~~---~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~ 296 (446)
++=..- ..++.-... -..+.+++++||.+. .|..||..++.
T Consensus 290 G~~~~~f~~~~~~~cvkf----~pd~~n~fl~G~sd~--------ki~~wDiRs~k 333 (503)
T KOG0282|consen 290 GQVLSRFHLDKVPTCVKF----HPDNQNIFLVGGSDK--------KIRQWDIRSGK 333 (503)
T ss_pred ceEEEEEecCCCceeeec----CCCCCcEEEEecCCC--------cEEEEeccchH
Confidence 765432 111211111 112348999999754 46667666654
No 177
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=23.03 E-value=1.6e+02 Score=16.77 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=16.6
Q ss_pred EECCEEEEEeCCCCCCCCcccCcEEEEeCCCCc--eE
Q 013264 264 LEGDRFFVVSGYGTESQGRFKPDAECYDPKTGS--WS 298 (446)
Q Consensus 264 ~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~ 298 (446)
..++.+|+... ...++++|.++++ |+
T Consensus 4 ~~~~~v~~~~~---------~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 4 LSDGTVYVGST---------DGTLYALDAKTGEILWT 31 (33)
T ss_pred EECCEEEEEcC---------CCEEEEEEcccCcEEEE
Confidence 44667776432 2378999998763 64
No 178
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=22.20 E-value=3.3e+02 Score=28.67 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=32.4
Q ss_pred CeEEEEeCcCCCCc--EEEccCCccCccceEEEEECCcEEEEEeccCCCCCCCCeEEEEECCCC
Q 013264 183 PDVYVLDMVNNSSR--WRRVKPMSVARSFFACAVVGASTVCVAGGHDGQKNALKSAEVYDVEAD 244 (446)
Q Consensus 183 ~~v~~~d~~~~t~~--W~~~~~~p~~r~~~~~~~~~d~~iyv~GG~~~~~~~~~~~~~yd~~t~ 244 (446)
..+.+|+| .... -.+-+..-..|..--.-+++ +++.++-|++... ...+.+||-.+-
T Consensus 742 g~~rVy~P--rs~e~pv~Eg~gpvgtRgARi~wacd-gr~viv~Gfdk~S--eRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 742 GTLRVYEP--RSREQPVYEGKGPVGTRGARILWACD-GRIVIVVGFDKSS--ERQVQMYDAQTL 800 (1012)
T ss_pred ceEEEeCC--CCCCCccccCCCCccCcceeEEEEec-CcEEEEecccccc--hhhhhhhhhhhc
Confidence 36889999 4333 11112212234333344556 7888888887553 367778886553
No 179
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=21.46 E-value=6.5e+02 Score=25.85 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=40.7
Q ss_pred CCCCeEEEEECCCCcEEecCCCCccCCcceEEEEECCEEEEEeCCCCCCCCcccCcEEEEeCCCCce
Q 013264 231 NALKSAEVYDVEADEWRMLPEMDEERDECQGVCLEGDRFFVVSGYGTESQGRFKPDAECYDPKTGSW 297 (446)
Q Consensus 231 ~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~v~~yd~~~~~W 297 (446)
..++.+..+|+.++.=-.-.++..-|. .++...++.+.+++|.++.. .-.+...|+.+-.-
T Consensus 372 ~~ls~LvllD~~tg~~l~~S~~~~Ir~--r~~~~~~~~~vaI~g~~G~~----~ikLvlid~~tLev 432 (489)
T PF05262_consen 372 HYLSELVLLDSDTGDTLKRSPVNGIRG--RTFYEREDDLVAIAGCSGNA----AIKLVLIDPETLEV 432 (489)
T ss_pred CcceeEEEEeCCCCceecccccceecc--ceeEEcCCCEEEEeccCCch----heEEEecCccccee
Confidence 367899999999987666666666665 35566778888888885543 12344446666543
No 180
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.06 E-value=4.2e+02 Score=27.96 Aligned_cols=73 Identities=22% Similarity=0.509 Sum_probs=43.0
Q ss_pred eEEEE-eeCCEEEEEeCcCCCCCCccCeEEEEeCcCCCCc------EEEc--cCCc-cCccc-eEEEEECCcEEEEEecc
Q 013264 158 QCVAV-PASRKLLLIGGWDPITLEPVPDVYVLDMVNNSSR------WRRV--KPMS-VARSF-FACAVVGASTVCVAGGH 226 (446)
Q Consensus 158 ~~~~~-~~~~~lyv~GG~~~~~~~~~~~v~~~d~~~~t~~------W~~~--~~~p-~~r~~-~~~~~~~d~~iyv~GG~ 226 (446)
.|.+. +-++.+++-||.+. .+++||. .+.. -..+ .+++ .++.. ++.++-..+.++|-||.
T Consensus 121 kcla~~ak~~~lvaSgGLD~-------~IflWDi--n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 121 KCLAYIAKNNELVASGGLDR-------KIFLWDI--NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred eeeeecccCceeEEecCCCc-------cEEEEEc--cCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 34443 46888999999764 3666666 2221 1111 2333 33332 44444444678888886
Q ss_pred CCCCCCCCeEEEEECCCCc
Q 013264 227 DGQKNALKSAEVYDVEADE 245 (446)
Q Consensus 227 ~~~~~~~~~~~~yd~~t~~ 245 (446)
. +.+.+||+.+.+
T Consensus 192 e------k~lr~wDprt~~ 204 (735)
T KOG0308|consen 192 E------KDLRLWDPRTCK 204 (735)
T ss_pred c------cceEEecccccc
Confidence 4 577899998874
Done!