Query 013265
Match_columns 446
No_of_seqs 170 out of 1886
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.6 2.2E-16 4.7E-21 141.2 1.6 275 8-340 98-396 (419)
2 KOG4341 F-box protein containi 99.5 1E-15 2.2E-20 142.9 -2.1 346 7-407 70-438 (483)
3 PF08387 FBD: FBD; InterPro: 99.1 1.4E-10 3E-15 78.3 3.7 46 352-403 5-50 (51)
4 smart00579 FBD domain in FBox 98.8 1.3E-09 2.8E-14 79.9 1.3 64 367-432 5-68 (72)
5 PF12937 F-box-like: F-box-lik 98.7 1.4E-08 3E-13 67.6 3.5 36 8-43 1-36 (47)
6 PLN00113 leucine-rich repeat r 98.4 2.3E-07 5E-12 102.8 6.2 220 153-406 116-343 (968)
7 cd00116 LRR_RI Leucine-rich re 98.4 6.4E-07 1.4E-11 86.0 7.3 61 153-215 49-119 (319)
8 cd00116 LRR_RI Leucine-rich re 98.3 3.7E-07 8.1E-12 87.6 4.4 219 153-403 79-315 (319)
9 PLN03210 Resistant to P. syrin 98.3 1E-06 2.2E-11 98.7 7.1 81 152-235 631-714 (1153)
10 PF00646 F-box: F-box domain; 98.3 2.8E-07 6E-12 61.6 1.3 37 7-43 2-38 (48)
11 PLN00113 leucine-rich repeat r 98.2 1.3E-06 2.9E-11 96.8 6.5 223 152-406 90-319 (968)
12 KOG4341 F-box protein containi 98.2 1.4E-07 3.1E-12 89.0 -1.5 157 151-315 212-383 (483)
13 smart00256 FBOX A Receptor for 98.1 2.1E-06 4.5E-11 55.1 2.9 33 11-43 1-33 (41)
14 KOG2120 SCF ubiquitin ligase, 98.1 2.4E-07 5.1E-12 84.0 -3.2 159 155-339 185-346 (419)
15 KOG1909 Ran GTPase-activating 98.0 1E-06 2.2E-11 81.6 0.4 269 81-378 20-309 (382)
16 KOG4194 Membrane glycoprotein 98.0 3.3E-06 7.2E-11 83.2 2.3 191 120-341 102-327 (873)
17 PLN03210 Resistant to P. syrin 97.8 4.1E-05 8.8E-10 86.0 8.5 120 153-282 609-735 (1153)
18 KOG3207 Beta-tubulin folding c 97.6 6.7E-06 1.5E-10 78.4 -2.7 182 151-339 142-334 (505)
19 PF14580 LRR_9: Leucine-rich r 97.3 0.00011 2.4E-09 63.4 2.2 90 242-341 61-150 (175)
20 KOG4194 Membrane glycoprotein 97.3 3E-05 6.5E-10 76.7 -1.5 123 204-338 293-423 (873)
21 KOG1909 Ran GTPase-activating 97.3 0.00011 2.3E-09 68.6 1.9 230 153-407 28-282 (382)
22 KOG1947 Leucine rich repeat pr 97.3 2.1E-05 4.6E-10 79.9 -3.1 127 153-281 186-330 (482)
23 KOG1947 Leucine rich repeat pr 97.2 4.9E-05 1.1E-09 77.3 -1.2 167 154-342 160-332 (482)
24 KOG3207 Beta-tubulin folding c 97.0 0.00021 4.6E-09 68.5 1.0 103 151-255 193-311 (505)
25 KOG3665 ZYG-1-like serine/thre 96.8 0.00051 1.1E-08 72.2 1.8 214 156-403 61-283 (699)
26 KOG2982 Uncharacterized conser 96.8 0.0025 5.4E-08 58.4 5.7 219 153-392 69-307 (418)
27 PF07723 LRR_2: Leucine Rich R 96.7 0.002 4.3E-08 36.4 2.9 25 156-181 1-26 (26)
28 PRK15387 E3 ubiquitin-protein 96.6 0.003 6.6E-08 67.0 5.8 30 156-191 223-252 (788)
29 PRK15387 E3 ubiquitin-protein 96.6 0.0016 3.6E-08 68.9 3.5 14 365-378 443-456 (788)
30 KOG3665 ZYG-1-like serine/thre 96.6 0.0017 3.7E-08 68.3 3.4 39 153-192 146-184 (699)
31 KOG0444 Cytoskeletal regulator 96.5 6.3E-05 1.4E-09 75.1 -7.1 13 45-57 8-20 (1255)
32 PF14580 LRR_9: Leucine-rich r 96.4 0.0039 8.5E-08 53.9 4.4 133 243-404 17-149 (175)
33 PRK15370 E3 ubiquitin-protein 96.4 0.0018 3.9E-08 68.8 2.4 31 304-340 346-376 (754)
34 PRK15386 type III secretion pr 95.1 0.043 9.3E-07 53.7 6.0 13 181-193 94-106 (426)
35 PF13855 LRR_8: Leucine rich r 94.8 0.034 7.4E-07 38.7 3.3 13 300-312 45-57 (61)
36 KOG0444 Cytoskeletal regulator 94.6 0.0011 2.4E-08 66.5 -6.3 37 152-190 170-206 (1255)
37 PRK15370 E3 ubiquitin-protein 94.5 0.019 4.2E-07 61.1 2.1 54 155-215 241-294 (754)
38 KOG1259 Nischarin, modulator o 94.4 0.032 6.9E-07 51.4 3.0 57 245-315 284-340 (490)
39 PF13855 LRR_8: Leucine rich r 94.0 0.041 8.8E-07 38.3 2.2 54 225-281 1-58 (61)
40 PRK15386 type III secretion pr 93.6 0.13 2.9E-06 50.3 5.7 134 154-314 51-187 (426)
41 KOG2982 Uncharacterized conser 92.8 0.013 2.9E-07 53.8 -2.3 102 153-255 43-156 (418)
42 KOG4658 Apoptotic ATPase [Sign 92.5 0.09 2E-06 57.2 3.0 99 180-281 544-651 (889)
43 KOG3864 Uncharacterized conser 92.4 0.016 3.5E-07 50.3 -2.3 62 159-222 105-169 (221)
44 KOG2997 F-box protein FBX9 [Ge 92.3 0.082 1.8E-06 49.0 2.1 38 4-41 103-145 (366)
45 PLN03215 ascorbic acid mannose 92.2 0.1 2.2E-06 50.4 2.7 36 8-43 4-40 (373)
46 KOG0281 Beta-TrCP (transducin 92.2 0.064 1.4E-06 50.0 1.3 37 5-41 72-112 (499)
47 COG5238 RNA1 Ran GTPase-activa 91.8 0.12 2.6E-06 47.2 2.5 173 152-340 89-281 (388)
48 KOG0617 Ras suppressor protein 91.1 0.0084 1.8E-07 50.6 -5.2 18 297-314 166-183 (264)
49 KOG2123 Uncharacterized conser 90.6 0.018 3.8E-07 52.6 -4.0 49 204-253 19-71 (388)
50 PF12799 LRR_4: Leucine Rich r 90.2 0.12 2.7E-06 33.3 0.7 35 155-192 1-35 (44)
51 KOG1644 U2-associated snRNP A' 89.7 0.42 9.1E-06 41.8 3.8 103 266-389 58-162 (233)
52 KOG3864 Uncharacterized conser 88.7 0.088 1.9E-06 45.9 -1.0 63 152-215 122-187 (221)
53 KOG4658 Apoptotic ATPase [Sign 87.6 0.66 1.4E-05 50.7 4.5 63 266-340 565-627 (889)
54 KOG2123 Uncharacterized conser 87.5 0.021 4.6E-07 52.0 -5.7 30 223-252 61-95 (388)
55 KOG0618 Serine/threonine phosp 86.6 0.063 1.4E-06 56.8 -3.7 37 153-191 357-393 (1081)
56 KOG4237 Extracellular matrix p 86.2 1 2.3E-05 43.4 4.4 95 224-329 273-373 (498)
57 COG5238 RNA1 Ran GTPase-activa 86.1 0.57 1.2E-05 42.9 2.5 178 154-341 57-252 (388)
58 KOG1644 U2-associated snRNP A' 86.0 0.44 9.5E-06 41.7 1.7 91 241-341 60-150 (233)
59 smart00367 LRR_CC Leucine-rich 85.9 0.41 8.9E-06 26.8 1.0 17 180-196 1-17 (26)
60 KOG0617 Ras suppressor protein 85.6 0.019 4.1E-07 48.6 -6.6 38 299-340 145-182 (264)
61 KOG0618 Serine/threonine phosp 83.5 0.2 4.3E-06 53.3 -1.8 79 153-236 405-487 (1081)
62 PF13013 F-box-like_2: F-box-l 81.6 1.1 2.4E-05 35.2 2.1 37 7-43 21-61 (109)
63 KOG1259 Nischarin, modulator o 81.6 0.86 1.9E-05 42.3 1.8 215 171-405 173-409 (490)
64 KOG2739 Leucine-rich acidic nu 81.5 0.26 5.7E-06 44.7 -1.5 14 223-236 89-102 (260)
65 PF12799 LRR_4: Leucine Rich r 81.3 1.6 3.4E-05 28.1 2.5 35 181-215 1-35 (44)
66 KOG0472 Leucine-rich repeat pr 80.4 0.36 7.7E-06 46.6 -1.1 38 300-341 501-538 (565)
67 KOG0472 Leucine-rich repeat pr 78.4 0.033 7.1E-07 53.4 -8.6 63 240-314 223-285 (565)
68 COG4886 Leucine-rich repeat (L 78.3 0.73 1.6E-05 45.6 0.2 141 156-314 141-287 (394)
69 KOG2739 Leucine-rich acidic nu 77.3 1.4 3E-05 40.1 1.7 89 243-341 63-153 (260)
70 PLN03150 hypothetical protein; 77.0 2.3 5E-05 44.9 3.5 78 227-315 420-501 (623)
71 KOG1859 Leucine-rich repeat pr 75.1 0.43 9.3E-06 49.6 -2.4 67 91-169 53-123 (1096)
72 KOG0274 Cdc4 and related F-box 74.6 1.4 3.1E-05 45.3 1.2 37 5-41 105-141 (537)
73 PF08387 FBD: FBD; InterPro: 72.4 4.4 9.5E-05 26.9 2.8 36 304-339 14-50 (51)
74 KOG1859 Leucine-rich repeat pr 70.2 0.26 5.6E-06 51.1 -5.2 35 154-192 186-220 (1096)
75 PF13516 LRR_6: Leucine Rich r 69.8 1.5 3.3E-05 23.8 0.0 20 155-174 2-21 (24)
76 PLN03150 hypothetical protein; 69.3 4.4 9.6E-05 42.8 3.4 81 247-341 420-500 (623)
77 PF13504 LRR_7: Leucine rich r 62.7 6 0.00013 19.6 1.4 11 182-192 2-12 (17)
78 PF13306 LRR_5: Leucine rich r 57.4 12 0.00025 30.0 3.2 10 180-189 11-20 (129)
79 COG4886 Leucine-rich repeat (L 51.8 2.6 5.7E-05 41.6 -1.9 165 153-340 114-286 (394)
80 smart00579 FBD domain in FBox 51.2 22 0.00048 25.3 3.5 39 304-342 5-44 (72)
81 PF09372 PRANC: PRANC domain; 40.4 24 0.00051 27.0 2.3 25 6-30 70-94 (97)
82 KOG3926 F-box proteins [Amino 38.0 22 0.00048 32.6 1.9 50 6-56 200-256 (332)
83 PF08187 Tetradecapep: Myoacti 34.7 14 0.0003 16.9 0.1 9 2-10 4-12 (14)
84 smart00368 LRR_RI Leucine rich 34.7 21 0.00046 20.2 0.9 21 155-175 2-22 (28)
85 KOG4408 Putative Mg2+ and Co2+ 33.0 13 0.00029 35.1 -0.2 36 8-43 8-43 (386)
86 KOG3763 mRNA export factor TAP 31.4 1.2E+02 0.0025 31.2 5.9 89 243-338 216-308 (585)
87 KOG4579 Leucine-rich repeat (L 30.0 9.7 0.00021 31.5 -1.4 55 142-201 66-120 (177)
88 KOG0531 Protein phosphatase 1, 26.2 15 0.00032 36.7 -1.3 99 152-255 92-196 (414)
89 cd03527 RuBisCO_small Ribulose 23.1 3.5E+02 0.0077 20.9 6.0 70 20-100 6-83 (99)
90 KOG0531 Protein phosphatase 1, 22.5 20 0.00043 35.7 -1.2 77 152-235 115-196 (414)
91 COG0864 NikR Predicted transcr 22.4 38 0.00081 27.9 0.7 39 4-42 3-52 (136)
92 KOG4237 Extracellular matrix p 20.9 35 0.00076 33.4 0.2 14 268-281 270-283 (498)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.2e-16 Score=141.25 Aligned_cols=275 Identities=21% Similarity=0.245 Sum_probs=175.6
Q ss_pred CCCCChHHHHHHHhCCChhHHHHHhhccchhhhh------cccccceEEecCCCCCCCCCCccccCCCCCchhhHhHHHH
Q 013265 8 INELPDDILVNILSRLTMKEAVRTSIISSRWRYL------WRGFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVN 81 (446)
Q Consensus 8 is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~l------w~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (446)
+..|||||+..||+.|+.||..+.+.|||||.++ |. .+++....+.+ ....+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~----~lDl~~r~i~p------------------~~l~~ 155 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ----TLDLTGRNIHP------------------DVLGR 155 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee----eeccCCCccCh------------------hHHHH
Confidence 6789999999999999999999999999999865 65 56665554432 22222
Q ss_pred HHHHHHHhccCCCcceEEEEEecCCcchHHHHHHH--HHHcCCcEEEEeeeccccccccccccccccccCC-cccccccc
Q 013265 82 WVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKF--ALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDF-YSSFRHLT 158 (446)
Q Consensus 82 ~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wi~~--~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~L~ 158 (446)
.+ + +| |.-|++.-..... .+.... .++..++.+++..... ... .+.. ...|..||
T Consensus 156 l~-----~-rg--V~v~Rlar~~~~~---prlae~~~~frsRlq~lDLS~s~i----------t~s-tl~~iLs~C~kLk 213 (419)
T KOG2120|consen 156 LL-----S-RG--VIVFRLARSFMDQ---PRLAEHFSPFRSRLQHLDLSNSVI----------TVS-TLHGILSQCSKLK 213 (419)
T ss_pred HH-----h-CC--eEEEEcchhhhcC---chhhhhhhhhhhhhHHhhcchhhe----------eHH-HHHHHHHHHHhhh
Confidence 22 1 23 4445443111111 112222 2333577777644321 000 0000 23578999
Q ss_pred ceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee---EeCCcCccceEEeeccCCCCeEEE-----ECCceeEE
Q 013265 159 DLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK---VSGPSLKLKHLKLNKLDNLKDLQL-----HAPNLLSF 230 (446)
Q Consensus 159 ~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~---i~~~~~~L~~L~i~~~~~l~~~~i-----~~p~L~~l 230 (446)
.|.|.+..++|. +..-++. -.+|++|+|..|.|++... +..+|++|.+|.++.|......+. ..++|+.|
T Consensus 214 ~lSlEg~~LdD~-I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 214 NLSLEGLRLDDP-IVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred hccccccccCcH-HHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 999999998876 3344667 7899999999999987653 334668999999999985544321 24889999
Q ss_pred EEcccccc-------cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCC
Q 013265 231 EYSGPILP-------FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEM 303 (446)
Q Consensus 231 ~~~~~~~~-------~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 303 (446)
++.|+.-. .-...+|+|.+++++++ .... .+....+..++.|++|.++.|+..... . .-.+...
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~-v~l~-~~~~~~~~kf~~L~~lSlsRCY~i~p~------~-~~~l~s~ 362 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS-VMLK-NDCFQEFFKFNYLQHLSLSRCYDIIPE------T-LLELNSK 362 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccc-cccC-chHHHHHHhcchheeeehhhhcCCChH------H-eeeeccC
Confidence 99888422 22346888888888776 2221 134466677888999998887543321 1 1124456
Q ss_pred CcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265 304 CNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL 340 (446)
Q Consensus 304 ~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 340 (446)
|.|++|++.++..+. .+.-+.+.||+|+.-.-++
T Consensus 363 psl~yLdv~g~vsdt---~mel~~e~~~~lkin~q~~ 396 (419)
T KOG2120|consen 363 PSLVYLDVFGCVSDT---TMELLKEMLSHLKINCQHF 396 (419)
T ss_pred cceEEEEeccccCch---HHHHHHHhCccccccceee
Confidence 788899888886443 3455677888887665544
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.51 E-value=1e-15 Score=142.92 Aligned_cols=346 Identities=18% Similarity=0.148 Sum_probs=204.1
Q ss_pred cCC-CCChHHHHHHHhCCChhHHHHHhhccchhhhhcc--cccceEEecCCCCCCCCCCccccCCCCCchhhHhHHHHHH
Q 013265 7 HIN-ELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR--GFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNWV 83 (446)
Q Consensus 7 ~is-~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~--~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (446)
-++ .||.|++.+|||+|.++...|++++|+-|.-+-. .....+++... +. + ....|
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~--~r--------------D-----v~g~V 128 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTF--QR--------------D-----VDGGV 128 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcc--hh--------------c-----CCCcc
Confidence 344 5999999999999999999999999999986522 01113333222 11 0 01123
Q ss_pred HHHHHhccCCCcceEEEEEecCCcchHHHHHHHHH-HcCCcEEEEeeeccccccccccccccccccC-C-ccccccccce
Q 013265 84 NQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFAL-ERRVRRLELDFSRVVYNLRFVGQYTFPSHLD-F-YSSFRHLTDL 160 (446)
Q Consensus 84 ~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wi~~~~-~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~-~-~~~~~~L~~L 160 (446)
-..+.+|.|..+++++++...+... ...-.++. .+++++|.+... +++....+ + ...+++|+.|
T Consensus 129 V~~~~~Rcgg~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc-----------~~iTd~s~~sla~~C~~l~~l 195 (483)
T KOG4341|consen 129 VENMISRCGGFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGC-----------KKITDSSLLSLARYCRKLRHL 195 (483)
T ss_pred eehHhhhhccccccccccccccCCc--chhhHHhhhCCchhhhhhhcc-----------eeccHHHHHHHHHhcchhhhh
Confidence 3344455556688888876543222 11111222 236777754322 22221111 1 3467888888
Q ss_pred EEEEEE-eChHHHHHHHhcCCCCcceeeEeccCCCCceeE---eCCcCccceEEeeccCCCC-----eEEEECCceeEEE
Q 013265 161 SLTTVG-ITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV---SGPSLKLKHLKLNKLDNLK-----DLQLHAPNLLSFE 231 (446)
Q Consensus 161 ~L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i---~~~~~~L~~L~i~~~~~l~-----~~~i~~p~L~~l~ 231 (446)
.|..|. +++..+..+..+ ||+|+.|.++.|..+..-.+ ...++.++.+...+|..++ .+.-.++.+..++
T Consensus 196 ~L~~c~~iT~~~Lk~la~g-C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 196 NLHSCSSITDVSLKYLAEG-CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred hhcccchhHHHHHHHHHHh-hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence 888855 677777777778 88888888888876654222 2233556666666775422 1122233344444
Q ss_pred Eccccc------ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCc
Q 013265 232 YSGPIL------PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCN 305 (446)
Q Consensus 232 ~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (446)
+..+.. ...--.+..|+.+....+. +.....+..+.++.++|+.|.+..|-. +....+-..-.+++.
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t-~~~d~~l~aLg~~~~~L~~l~l~~c~~------fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCT-DITDEVLWALGQHCHNLQVLELSGCQQ------FSDRGFTMLGRNCPH 347 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCC-CCchHHHHHHhcCCCceEEEeccccch------hhhhhhhhhhcCChh
Confidence 323310 0111134455555554441 222233447889999999999998632 222222223357889
Q ss_pred ccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEeccccccccccccccc--CCCCccccccCCCcEEEEEeeecCcch
Q 013265 306 LKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIK--DQPYLSFTELRSIRVVELLGFVGHTAD 383 (446)
Q Consensus 306 L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p--~c~~~~~~~l~~L~~v~i~~~~g~~~e 383 (446)
|+.|.+..++...+. .+.++-.+||.|++|.++- +.-..+..+..+. .|-. .+|..+++.+..+...
T Consensus 348 Le~l~~e~~~~~~d~-tL~sls~~C~~lr~lslsh---ce~itD~gi~~l~~~~c~~------~~l~~lEL~n~p~i~d- 416 (483)
T KOG4341|consen 348 LERLDLEECGLITDG-TLASLSRNCPRLRVLSLSH---CELITDEGIRHLSSSSCSL------EGLEVLELDNCPLITD- 416 (483)
T ss_pred hhhhcccccceehhh-hHhhhccCCchhccCChhh---hhhhhhhhhhhhhhccccc------cccceeeecCCCCchH-
Confidence 999999999754443 6889999999999999963 2211122222222 3544 8899999998877644
Q ss_pred HHHHHHHHhcCccccceEEecCCC
Q 013265 384 FELVMYLIFSAKLLEKIIIDPCPT 407 (446)
Q Consensus 384 ~~~~~~ll~~a~~Le~l~i~~~~~ 407 (446)
...++ +.+++.||++.+.....
T Consensus 417 -~~Le~-l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 417 -ATLEH-LSICRNLERIELIDCQD 438 (483)
T ss_pred -HHHHH-HhhCcccceeeeechhh
Confidence 33444 47888999988776544
No 3
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.06 E-value=1.4e-10 Score=78.27 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=42.9
Q ss_pred cccccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEEe
Q 013265 352 VKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIID 403 (446)
Q Consensus 352 ~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~ 403 (446)
....|+|.. +||+.|++.||.|.++|++|++|+++||++||+|+|.
T Consensus 5 ~~~~p~Cl~------s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 5 PSSVPECLL------SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred CCCCccchh------heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 344689998 9999999999999999999999999999999999996
No 4
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=98.81 E-value=1.3e-09 Score=79.91 Aligned_cols=64 Identities=25% Similarity=0.290 Sum_probs=50.8
Q ss_pred CCCcEEEEEeeecCcchHHHHHHHHhcCccccceEEecCCCccccCcchhhhhhhHHHHHHHHHHH
Q 013265 367 RSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPAELIWRETAEYQSARRRAF 432 (446)
Q Consensus 367 ~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (446)
++|++|+|.||.|..+|+++++||++||+.||+|+|...... .+... .+..++..+++||..++
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~-~~~~~-~i~~~L~~~~~aS~~c~ 68 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSD-DDEKL-EILKELLSLPRASSSCQ 68 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCC-ccHHH-HHHHHHHhCcCCCCceE
Confidence 889999999999999999999999999999999999998764 22222 24555666666665544
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.70 E-value=1.4e-08 Score=67.57 Aligned_cols=36 Identities=39% Similarity=0.755 Sum_probs=31.6
Q ss_pred CCCCChHHHHHHHhCCChhHHHHHhhccchhhhhcc
Q 013265 8 INELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR 43 (446)
Q Consensus 8 is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~ 43 (446)
|+.||+||+.+||++|+.+|.++++.|||+|+++..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 678999999999999999999999999999998654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.44 E-value=2.3e-07 Score=102.84 Aligned_cols=220 Identities=15% Similarity=0.053 Sum_probs=114.4
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeE---EEECCcee
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDL---QLHAPNLL 228 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~---~i~~p~L~ 228 (446)
.+++|+.|+|++..+++..- ... .++|+.|++.++.....+ ..-..+++|+.|.++++.-...+ .-+.++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p---~~~-l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIP---RGS-IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred cCCCCCEEECcCCccccccC---ccc-cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 45667777776665543211 124 666777777666543221 11123356777777666411111 12346677
Q ss_pred EEEEcccc----cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCC
Q 013265 229 SFEYSGPI----LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC 304 (446)
Q Consensus 229 ~l~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (446)
+|++.++. .+-.++++++|+.+++..+......+ ..+..+++|+.|++.++.+. ...+..+..++
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~ 260 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP---YEIGGLTSLNHLDLVYNNLT--------GPIPSSLGNLK 260 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC---hhHhcCCCCCEEECcCceec--------cccChhHhCCC
Confidence 77766553 23345566677777765543221111 34456677777777663221 12344455667
Q ss_pred cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchH
Q 013265 305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADF 384 (446)
Q Consensus 305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~ 384 (446)
+|++|.+..+.-... +..-+.+.++|+.|++..+ ... + ..|.... ++.+|+++.+.+..-....
T Consensus 261 ~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~n---~l~--~---~~p~~~~----~l~~L~~L~l~~n~~~~~~- 324 (968)
T PLN00113 261 NLQYLFLYQNKLSGP---IPPSIFSLQKLISLDLSDN---SLS--G---EIPELVI----QLQNLEILHLFSNNFTGKI- 324 (968)
T ss_pred CCCEEECcCCeeecc---CchhHhhccCcCEEECcCC---eec--c---CCChhHc----CCCCCcEEECCCCccCCcC-
Confidence 777777766531111 1122355677777777432 100 0 1233221 3478888888764322111
Q ss_pred HHHHHHHhcCccccceEEecCC
Q 013265 385 ELVMYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 385 ~~~~~ll~~a~~Le~l~i~~~~ 406 (446)
..-+.+.+.|+.+.+..+.
T Consensus 325 ---~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 325 ---PVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred ---ChhHhcCCCCCEEECcCCC
Confidence 1124677899999987654
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.39 E-value=6.4e-07 Score=85.98 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=33.5
Q ss_pred ccccccceEEEEEEeC--hH---HHHHHHhcCCCCcceeeEeccCCCCce-----eEeCCcCccceEEeeccC
Q 013265 153 SFRHLTDLSLTTVGIT--GE---VLEHLLCYCCPVLEVLNVAESSSLTSL-----KVSGPSLKLKHLKLNKLD 215 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~--~~---~l~~ll~~~cp~Le~L~L~~c~~~~~~-----~i~~~~~~L~~L~i~~~~ 215 (446)
..++|++|.+.+..+. .. .+...+.. +++|++|++.+|...... .+... ++|++|.+.+|.
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~ 119 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG 119 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHh-cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc
Confidence 4566777777776655 22 23344556 677777777776543211 11111 346666666654
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.35 E-value=3.7e-07 Score=87.62 Aligned_cols=219 Identities=17% Similarity=0.126 Sum_probs=96.0
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCC---CCcceeeEeccCCCC-ce-eE---eCCc-CccceEEeeccCCCCeEEEE
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCC---PVLEVLNVAESSSLT-SL-KV---SGPS-LKLKHLKLNKLDNLKDLQLH 223 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~c---p~Le~L~L~~c~~~~-~~-~i---~~~~-~~L~~L~i~~~~~l~~~~i~ 223 (446)
.+++|+.|.|.++.+.+... ..+.. + |+|++|++.+|.... .. .+ ...+ ++|++|.+.+|. +..-..
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~-~~~~~-l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~- 154 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGC-GVLES-LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASC- 154 (319)
T ss_pred hcCceeEEEccCCCCChhHH-HHHHH-HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHH-
Confidence 35677777777776653211 11222 2 447777777765321 00 00 0111 345555555443 110000
Q ss_pred CCceeEEEEcccccccccCCCCCcceEEecccchhh-hhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265 224 APNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAY-IAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE 302 (446)
Q Consensus 224 ~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
. .....+..++.|+.+++..+.+.. ....+...+...++|+.|.+.++.+. ......+...+..
T Consensus 155 ----~-------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~----~~~~~~l~~~~~~ 219 (319)
T cd00116 155 ----E-------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT----DEGASALAETLAS 219 (319)
T ss_pred ----H-------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC----hHHHHHHHHHhcc
Confidence 0 000112233445555554432221 11112223334456777776664331 1111122233455
Q ss_pred CCcccEEEEEecCCCCCHHHHHHHHhh----CCCceEEEEEEecccccccccc--c-ccccCCCCccccccCCCcEEEEE
Q 013265 303 MCNLKHLEIIGTPKVNDLIFCIALLEA----APSLYKFSLKLVSQYDYESYES--V-KTIKDQPYLSFTELRSIRVVELL 375 (446)
Q Consensus 303 ~~~L~~L~L~~~~~~~~~~~l~~ll~~----~p~L~~L~l~~~~~~~~~~~~~--~-~~~p~c~~~~~~~l~~L~~v~i~ 375 (446)
+++|++|++..+.-.. .++..+.+. .+.|++|++..+ ...+.+. + ...+.+ .+|+.+.+.
T Consensus 220 ~~~L~~L~ls~n~l~~--~~~~~l~~~~~~~~~~L~~L~l~~n---~i~~~~~~~l~~~~~~~--------~~L~~l~l~ 286 (319)
T cd00116 220 LKSLEVLNLGDNNLTD--AGAAALASALLSPNISLLTLSLSCN---DITDDGAKDLAEVLAEK--------ESLLELDLR 286 (319)
T ss_pred cCCCCEEecCCCcCch--HHHHHHHHHHhccCCCceEEEccCC---CCCcHHHHHHHHHHhcC--------CCccEEECC
Confidence 6667777776653111 133333333 356777776433 2221111 0 111221 456666665
Q ss_pred ee-ecCcchHHHHHHHHhcCccccceEEe
Q 013265 376 GF-VGHTADFELVMYLIFSAKLLEKIIID 403 (446)
Q Consensus 376 ~~-~g~~~e~~~~~~ll~~a~~Le~l~i~ 403 (446)
+- -+.+.+..+++-+..+++.|+.+.|.
T Consensus 287 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 287 GNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred CCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 42 23344556666666666666666654
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.30 E-value=1e-06 Score=98.74 Aligned_cols=81 Identities=26% Similarity=0.327 Sum_probs=46.2
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE-eCCcCccceEEeeccCCCCeEE--EECCcee
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV-SGPSLKLKHLKLNKLDNLKDLQ--LHAPNLL 228 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i-~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~ 228 (446)
..+++|+.|+|+++..... +.. ++. +++|+.|.+.+|..+..+.- -..+++|+.|.+.+|..++.+. ++.++|+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~-ip~-ls~-l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~ 707 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKE-IPD-LSM-ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLY 707 (1153)
T ss_pred ccCCCCCEEECCCCCCcCc-CCc-ccc-CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCC
Confidence 4577788888776532111 111 456 77777777777766544321 1233567777777776555442 2345666
Q ss_pred EEEEccc
Q 013265 229 SFEYSGP 235 (446)
Q Consensus 229 ~l~~~~~ 235 (446)
.|.++|+
T Consensus 708 ~L~Lsgc 714 (1153)
T PLN03210 708 RLNLSGC 714 (1153)
T ss_pred EEeCCCC
Confidence 6666665
No 10
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.28 E-value=2.8e-07 Score=61.57 Aligned_cols=37 Identities=46% Similarity=0.764 Sum_probs=31.4
Q ss_pred cCCCCChHHHHHHHhCCChhHHHHHhhccchhhhhcc
Q 013265 7 HINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR 43 (446)
Q Consensus 7 ~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~ 43 (446)
.|++||+|++.+|+++|+.+|.++.+.|||+|+.+..
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence 3678999999999999999999999999999998765
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.24 E-value=1.3e-06 Score=96.78 Aligned_cols=223 Identities=15% Similarity=0.123 Sum_probs=145.9
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeE---EEECCcee
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDL---QLHAPNLL 228 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~---~i~~p~L~ 228 (446)
..+++|+.|+|+++.+++.....++.. +++|++|++.++...+.+.. ...++|++|.++++.-...+ .-+.++|+
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~-l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTT-SSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhcc-CCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 468999999999988765434445668 99999999998865443322 23478999999988621111 12458999
Q ss_pred EEEEcccc----cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCC
Q 013265 229 SFEYSGPI----LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC 304 (446)
Q Consensus 229 ~l~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (446)
+|++.++. .+..+.++++|+.+++..+......+ ..+..+++|+.|.+..+.+. ...+..+..++
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~ 236 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP---RELGQMKSLKWIYLGYNNLS--------GEIPYEIGGLT 236 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC---hHHcCcCCccEEECcCCccC--------CcCChhHhcCC
Confidence 99998774 24456788999999997764322222 55678899999999874321 23344567789
Q ss_pred cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchH
Q 013265 305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADF 384 (446)
Q Consensus 305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~ 384 (446)
+|++|++..+.-... +..-+.++++|+.|.+.... .. + ..|... .++.+|+++.+.+..-...
T Consensus 237 ~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~---l~--~---~~p~~l----~~l~~L~~L~Ls~n~l~~~-- 299 (968)
T PLN00113 237 SLNHLDLVYNNLTGP---IPSSLGNLKNLQYLFLYQNK---LS--G---PIPPSI----FSLQKLISLDLSDNSLSGE-- 299 (968)
T ss_pred CCCEEECcCceeccc---cChhHhCCCCCCEEECcCCe---ee--c---cCchhH----hhccCcCEEECcCCeeccC--
Confidence 999999988742221 23456788999999985431 11 1 123222 1347899998876432111
Q ss_pred HHHHHHHhcCccccceEEecCC
Q 013265 385 ELVMYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 385 ~~~~~ll~~a~~Le~l~i~~~~ 406 (446)
.--.+.+.+.|+.+.+....
T Consensus 300 --~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 300 --IPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred --CChhHcCCCCCcEEECCCCc
Confidence 11124678899999887653
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.22 E-value=1.4e-07 Score=89.03 Aligned_cols=157 Identities=21% Similarity=0.232 Sum_probs=84.4
Q ss_pred ccccccccceEEEEEE-eChHHHHHHHhcCCCCcceeeEeccCCCCce---eEeCCcCccceEEeeccCCCCeEE-----
Q 013265 151 YSSFRHLTDLSLTTVG-ITGEVLEHLLCYCCPVLEVLNVAESSSLTSL---KVSGPSLKLKHLKLNKLDNLKDLQ----- 221 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~---~i~~~~~~L~~L~i~~~~~l~~~~----- 221 (446)
..+|++|+.|+++++. +++.+++.+..+ |..|+++.+++|...+.- .+.+.+.-+.++++..|..+.+..
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG-~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRG-CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhcc-chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 4578888888888887 777778888888 888888888777765321 233333445555544554333322
Q ss_pred EECCceeEEEEccccc-c----c-ccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccc
Q 013265 222 LHAPNLLSFEYSGPIL-P----F-SFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGR 295 (446)
Q Consensus 222 i~~p~L~~l~~~~~~~-~----~-~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~ 295 (446)
-.+..|+.+.+.++.. + . -..++++|+-+.+..+. .+....+..+-.+++.|+.|.+..+..... ..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~-~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d------~t 363 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ-QFSDRGFTMLGRNCPHLERLDLEECGLITD------GT 363 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc-hhhhhhhhhhhcCChhhhhhcccccceehh------hh
Confidence 1234455555554421 0 1 12245555555555441 233333335555666666666665433211 12
Q ss_pred cccCCCCCCcccEEEEEecC
Q 013265 296 YLHDIPEMCNLKHLEIIGTP 315 (446)
Q Consensus 296 ~~~~~~~~~~L~~L~L~~~~ 315 (446)
+....++++.|+.|+|+-|.
T Consensus 364 L~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred HhhhccCCchhccCChhhhh
Confidence 22333456666666666553
No 13
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.13 E-value=2.1e-06 Score=55.06 Aligned_cols=33 Identities=48% Similarity=0.777 Sum_probs=31.4
Q ss_pred CChHHHHHHHhCCChhHHHHHhhccchhhhhcc
Q 013265 11 LPDDILVNILSRLTMKEAVRTSIISSRWRYLWR 43 (446)
Q Consensus 11 LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~ 43 (446)
||+|++.+|+++|+.+|.++++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998765
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.4e-07 Score=83.96 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=89.7
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce--eEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY 232 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~ 232 (446)
..|+.|+|+...++...+..+++. |..|+.|.|.+-.....+ .|... ..|+.|.++.|..+....+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~-C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~---------- 252 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQ-CSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENAL---------- 252 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHH-HHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHH----------
Confidence 369999999999999999999999 999999999987655544 34333 6899999988886544322
Q ss_pred cccccccccCCCCCcceEEecccchhhhhhhhhhhhccC-CCceEEEEeecccccccchhcccccccCCCCCCcccEEEE
Q 013265 233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFL-VQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEI 311 (446)
Q Consensus 233 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l-~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 311 (446)
...+.++.+|.++++..|.. +.. .+..+..+. ++++.|.|.++--..+.. .+......+|+|.+|+|
T Consensus 253 -----~ll~~scs~L~~LNlsWc~l-~~~-~Vtv~V~hise~l~~LNlsG~rrnl~~s-----h~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 253 -----QLLLSSCSRLDELNLSWCFL-FTE-KVTVAVAHISETLTQLNLSGYRRNLQKS-----HLSTLVRRCPNLVHLDL 320 (419)
T ss_pred -----HHHHHhhhhHhhcCchHhhc-cch-hhhHHHhhhchhhhhhhhhhhHhhhhhh-----HHHHHHHhCCceeeecc
Confidence 12344555555555544311 100 011222222 245555555521111100 00111234556666666
Q ss_pred EecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 312 IGTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 312 ~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
+.+....+ ++...+..+|.|+.|.++
T Consensus 321 SD~v~l~~--~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 321 SDSVMLKN--DCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred ccccccCc--hHHHHHHhcchheeeehh
Confidence 65543222 445555556666666664
No 15
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.05 E-value=1e-06 Score=81.60 Aligned_cols=269 Identities=18% Similarity=0.140 Sum_probs=149.5
Q ss_pred HHHHHHHHhccCCCcceEEEEEecCCcchHHHHHHHHHHcCCcEEEEe-eecccccccccccccccccc--CC--ccccc
Q 013265 81 NWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELD-FSRVVYNLRFVGQYTFPSHL--DF--YSSFR 155 (446)
Q Consensus 81 ~~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wi~~~~~~~l~~L~l~-~~~~~~~~~~~~~~~lp~~~--~~--~~~~~ 155 (446)
+.|...+..... +..+++..+..+ ....+|+....+. .++|... ++.... ....-.+|..+ ++ ...+|
T Consensus 20 ~~v~~~~~~~~s--~~~l~lsgnt~G-~EAa~~i~~~L~~-~~~L~~v~~sd~ft---GR~~~Ei~e~L~~l~~aL~~~~ 92 (382)
T KOG1909|consen 20 KDVEEELEPMDS--LTKLDLSGNTFG-TEAARAIAKVLAS-KKELREVNLSDMFT---GRLKDEIPEALKMLSKALLGCP 92 (382)
T ss_pred hhHHHHhcccCc--eEEEeccCCchh-HHHHHHHHHHHhh-cccceeeehHhhhc---CCcHHHHHHHHHHHHHHHhcCC
Confidence 334444444333 666655433211 1557788877654 2333321 121100 00111233321 11 34678
Q ss_pred cccceEEEEEEeCh---HHHHHHHhcCCCCcceeeEeccCCCC--ceeEeCCcCccceEEeeccCCCCeEEEECCceeEE
Q 013265 156 HLTDLSLTTVGITG---EVLEHLLCYCCPVLEVLNVAESSSLT--SLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSF 230 (446)
Q Consensus 156 ~L~~L~L~~~~~~~---~~l~~ll~~~cp~Le~L~L~~c~~~~--~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l 230 (446)
+|++|+|+...|.. ..+..++++ |..|++|.|.+|..-. .-.+. .-|.+|... ...-+.|.|+++
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s-~~~L~eL~L~N~Glg~~ag~~l~---~al~~l~~~------kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSS-CTDLEELYLNNCGLGPEAGGRLG---RALFELAVN------KKAASKPKLRVF 162 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHh-ccCHHHHhhhcCCCChhHHHHHH---HHHHHHHHH------hccCCCcceEEE
Confidence 99999999998875 368999999 9999999999996321 10111 112222211 111145666666
Q ss_pred EEccccc--------ccccCCCCCcceEEecccchhhh-hhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265 231 EYSGPIL--------PFSFRNVPNLVDASFWGCFSAYI-AKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP 301 (446)
Q Consensus 231 ~~~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~ 301 (446)
.+..... ...+...+.|+++.+..+.+... ..-+..-+..+++|+.|+|....+... ....+...++
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e----gs~~LakaL~ 238 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE----GSVALAKALS 238 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----HHHHHHHHhc
Confidence 6544321 12344557888888854432211 123345678899999999998544322 2234456678
Q ss_pred CCCcccEEEEEecC--CCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee
Q 013265 302 EMCNLKHLEIIGTP--KVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV 378 (446)
Q Consensus 302 ~~~~L~~L~L~~~~--~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~ 378 (446)
.+++|+.|.+..|- ......-+-.+-+..|+|+.|.+.++.- ..++.. .+..|.. ....|+++.+.|.+
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI---t~da~~-~la~~~~----ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI---TRDAAL-ALAACMA----EKPDLEKLNLNGNR 309 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh---HHHHHH-HHHHHHh----cchhhHHhcCCccc
Confidence 89999999999995 3333444455667789999999966521 111111 1112221 12778999998864
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.97 E-value=3.3e-06 Score=83.24 Aligned_cols=191 Identities=17% Similarity=0.188 Sum_probs=101.6
Q ss_pred cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCC--CCce
Q 013265 120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSS--LTSL 197 (446)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~--~~~~ 197 (446)
.+++++.++... .-.+|.. .....+|+.|.|.+..++.-.=+ -++. .|.||.|+|+.... +...
T Consensus 102 ~nLq~v~l~~N~---------Lt~IP~f---~~~sghl~~L~L~~N~I~sv~se-~L~~-l~alrslDLSrN~is~i~~~ 167 (873)
T KOG4194|consen 102 PNLQEVNLNKNE---------LTRIPRF---GHESGHLEKLDLRHNLISSVTSE-ELSA-LPALRSLDLSRNLISEIPKP 167 (873)
T ss_pred Ccceeeeeccch---------hhhcccc---cccccceeEEeeeccccccccHH-HHHh-HhhhhhhhhhhchhhcccCC
Confidence 377777775432 1233432 22356799999998776532211 2556 89999999987543 2233
Q ss_pred eEeCCcCccceEEeeccCCCCeEEEEC----CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhh-------
Q 013265 198 KVSGPSLKLKHLKLNKLDNLKDLQLHA----PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAK------- 262 (446)
Q Consensus 198 ~i~~~~~~L~~L~i~~~~~l~~~~i~~----p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~------- 262 (446)
.+++. .++++|.+.+.. +..+..++ .+|..|.+....+ ...+.++|+|+.+++..+.++...-
T Consensus 168 sfp~~-~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~ 245 (873)
T KOG4194|consen 168 SFPAK-VNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP 245 (873)
T ss_pred CCCCC-CCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCch
Confidence 34443 678888888765 33332221 3566666665422 2456667777777665432211100
Q ss_pred ----------hh----hhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC----CCCCHHHHH
Q 013265 263 ----------NL----CQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP----KVNDLIFCI 324 (446)
Q Consensus 263 ----------~l----~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~----~~~~~~~l~ 324 (446)
++ .+.+..+.++++|+|....+.. --..++..+..|++|+|+.+. ....+
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~--------vn~g~lfgLt~L~~L~lS~NaI~rih~d~W---- 313 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA--------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSW---- 313 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceeecccchhhh--------hhcccccccchhhhhccchhhhheeecchh----
Confidence 00 0233344455555544321100 002234556777777777663 11222
Q ss_pred HHHhhCCCceEEEEEEe
Q 013265 325 ALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 325 ~ll~~~p~L~~L~l~~~ 341 (446)
+-|++|+.|+++..
T Consensus 314 ---sftqkL~~LdLs~N 327 (873)
T KOG4194|consen 314 ---SFTQKLKELDLSSN 327 (873)
T ss_pred ---hhcccceeEecccc
Confidence 44888888888654
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.84 E-value=4.1e-05 Score=86.02 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=75.2
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE---ECCceeE
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL---HAPNLLS 229 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i---~~p~L~~ 229 (446)
.+.+|+.|.|.+..+.. +..-+.. +++|+.|+|.+|..+..+.-.+.+++|+.|.+.+|..+..+.. ..++|+.
T Consensus 609 ~~~~L~~L~L~~s~l~~--L~~~~~~-l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEK--LWDGVHS-LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred CccCCcEEECcCccccc--ccccccc-CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 35678888888766542 2222456 8999999999887665543233457899999999887665532 3578888
Q ss_pred EEEcccc----cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeec
Q 013265 230 FEYSGPI----LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTC 282 (446)
Q Consensus 230 l~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~ 282 (446)
|++.++. .|.. .++++|+.+.+.++..- . .+....++++.|.+.+.
T Consensus 686 L~L~~c~~L~~Lp~~-i~l~sL~~L~Lsgc~~L---~---~~p~~~~nL~~L~L~~n 735 (1153)
T PLN03210 686 LDMSRCENLEILPTG-INLKSLYRLNLSGCSRL---K---SFPDISTNISWLDLDET 735 (1153)
T ss_pred EeCCCCCCcCccCCc-CCCCCCCEEeCCCCCCc---c---ccccccCCcCeeecCCC
Confidence 8888763 2222 26778888888765210 1 12222345666666553
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=6.7e-06 Score=78.43 Aligned_cols=182 Identities=16% Similarity=0.083 Sum_probs=103.8
Q ss_pred ccccccccceEEEEEEeChH-HHHHHHhcCCCCcceeeEeccCCCCce--eEeCCcCccceEEeeccCC----CCeEEEE
Q 013265 151 YSSFRHLTDLSLTTVGITGE-VLEHLLCYCCPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLDN----LKDLQLH 223 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~~~~~-~l~~ll~~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~~----l~~~~i~ 223 (446)
...|++++.|+|++.-+... .+.++... .|+||.|.|+.....-.. .....++.|+.|.+.+|.- ...+...
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eq-Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQ-LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHh-cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34689999999999887764 67888889 999999999865432111 1112336788899988861 2344556
Q ss_pred CCceeEEEEcccc-c---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccC
Q 013265 224 APNLLSFEYSGPI-L---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHD 299 (446)
Q Consensus 224 ~p~L~~l~~~~~~-~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~ 299 (446)
.|+|+.|.+.+.. . .........|+++++..+..-+. +..-....+|+|+.|.+..+.+..- ..+. ..-...
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~--~~~~~~~~l~~L~~Lnls~tgi~si-~~~d-~~s~~k 296 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF--DQGYKVGTLPGLNQLNLSSTGIASI-AEPD-VESLDK 296 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc--ccccccccccchhhhhccccCcchh-cCCC-ccchhh
Confidence 7888888776652 1 12233345677777765421110 0113445677777777776433211 0000 000112
Q ss_pred CCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 300 IPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 300 ~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
...|+.|++|.+..+.- .++.. ..=++..++|+.|.+.
T Consensus 297 t~~f~kL~~L~i~~N~I-~~w~s-l~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 297 THTFPKLEYLNISENNI-RDWRS-LNHLRTLENLKHLRIT 334 (505)
T ss_pred hcccccceeeecccCcc-ccccc-cchhhccchhhhhhcc
Confidence 34677777777776641 11111 1123445666666654
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.34 E-value=0.00011 Score=63.44 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=38.3
Q ss_pred CCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHH
Q 013265 242 RNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLI 321 (446)
Q Consensus 242 ~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 321 (446)
..+++|++++++.+....... .+...+|+|+.|.+...-+. .......+..+++|+.|+|.+++-.....
T Consensus 61 ~~L~~L~~L~L~~N~I~~i~~---~l~~~lp~L~~L~L~~N~I~-------~l~~l~~L~~l~~L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 61 PGLPRLKTLDLSNNRISSISE---GLDKNLPNLQELYLSNNKIS-------DLNELEPLSSLPKLRVLSLEGNPVCEKKN 130 (175)
T ss_dssp ---TT--EEE--SS---S-CH---HHHHH-TT--EEE-TTS----------SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred cChhhhhhcccCCCCCCcccc---chHHhCCcCCEEECcCCcCC-------ChHHhHHHHcCCCcceeeccCCcccchhh
Confidence 345677777776654332211 33456888888888874221 11112345678889999988775111112
Q ss_pred HHHHHHhhCCCceEEEEEEe
Q 013265 322 FCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 322 ~l~~ll~~~p~L~~L~l~~~ 341 (446)
.=..++..+|+|+.|+-...
T Consensus 131 YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 131 YRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHHHHHH-TT-SEETTEET
T ss_pred HHHHHHHHcChhheeCCEEc
Confidence 34557888999999986543
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.33 E-value=3e-05 Score=76.70 Aligned_cols=123 Identities=17% Similarity=0.182 Sum_probs=60.6
Q ss_pred CccceEEeeccCCCCeEEEE----CCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce
Q 013265 204 LKLKHLKLNKLDNLKDLQLH----APNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH 275 (446)
Q Consensus 204 ~~L~~L~i~~~~~l~~~~i~----~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~ 275 (446)
..|+.|.+++.. ++.+.++ +++|+.|+++...+ +-.+..+.+|+++.+..+.+++... ..+..+++|+
T Consensus 293 t~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e---~af~~lssL~ 368 (873)
T KOG4194|consen 293 TSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE---GAFVGLSSLH 368 (873)
T ss_pred chhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh---hHHHHhhhhh
Confidence 344444444443 5555554 47888887766532 2233445666667666655555444 4555666666
Q ss_pred EEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEE
Q 013265 276 TLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSL 338 (446)
Q Consensus 276 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l 338 (446)
+|+|...-+. ...+. -...+..++.|++|.+.++.-. .+ --.-+...++||+|++
T Consensus 369 ~LdLr~N~ls---~~IED--aa~~f~gl~~LrkL~l~gNqlk-~I--~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 369 KLDLRSNELS---WCIED--AAVAFNGLPSLRKLRLTGNQLK-SI--PKRAFSGLEALEHLDL 423 (873)
T ss_pred hhcCcCCeEE---EEEec--chhhhccchhhhheeecCceee-ec--chhhhccCcccceecC
Confidence 6666652110 01111 1122334566666666655300 00 0112344556666655
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.31 E-value=0.00011 Score=68.57 Aligned_cols=230 Identities=16% Similarity=0.116 Sum_probs=128.6
Q ss_pred ccccccceEEEEEEeChHH---HHHHHhcCCCCcceeeEeccCCCCc-eeEeCCcCccceEEeeccCCCCeEEEECCcee
Q 013265 153 SFRHLTDLSLTTVGITGEV---LEHLLCYCCPVLEVLNVAESSSLTS-LKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLL 228 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~---l~~ll~~~cp~Le~L~L~~c~~~~~-~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~ 228 (446)
.+..++.++|++.+|..+. +...+++ -+.|++-.+++-..-.. -.+.. .|+ .+...-+.+|.|+
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~-~~~L~~v~~sd~ftGR~~~Ei~e---~L~--------~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLAS-KKELREVNLSDMFTGRLKDEIPE---ALK--------MLSKALLGCPKLQ 95 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhh-cccceeeehHhhhcCCcHHHHHH---HHH--------HHHHHHhcCCcee
Confidence 4567788888888887653 4555555 45444444432211000 01110 111 0122223566777
Q ss_pred EEEEcccccc--------cccCCCCCcceEEecccchhhh-hhh---------hhhhhccCCCceEEEEeecccccccch
Q 013265 229 SFEYSGPILP--------FSFRNVPNLVDASFWGCFSAYI-AKN---------LCQHSIFLVQLHTLKLDTCHLLIGDSE 290 (446)
Q Consensus 229 ~l~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~~-~~~---------l~~~l~~l~~l~~L~L~~~~~~~~~~~ 290 (446)
++++++..+. -.+.++..|+++++..|..... ... ..+....-+.|+.+..+..-+.-+
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~--- 172 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG--- 172 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc---
Confidence 7777655221 1244577788888865532211 111 224455567788888776322211
Q ss_pred hcccccccCCCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEeccccccccccccc-ccCCCCccccccCC
Q 013265 291 YRAGRYLHDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKT-IKDQPYLSFTELRS 368 (446)
Q Consensus 291 ~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~-~p~c~~~~~~~l~~ 368 (446)
....+...+...++|+.+.+..++ .......+..-++.||+|++|+|+.. .+...+...- -+-|. +++
T Consensus 173 -ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN---tft~egs~~LakaL~s------~~~ 242 (382)
T KOG1909|consen 173 -GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN---TFTLEGSVALAKALSS------WPH 242 (382)
T ss_pred -cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc---hhhhHHHHHHHHHhcc------cch
Confidence 111222334556788888888886 33333467778888999999999543 2222222111 01122 178
Q ss_pred CcEEEEEeee-cCcchHHHHHHHHhcCccccceEEecCCC
Q 013265 369 IRVVELLGFV-GHTADFELVMYLIFSAKLLEKIIIDPCPT 407 (446)
Q Consensus 369 L~~v~i~~~~-g~~~e~~~~~~ll~~a~~Le~l~i~~~~~ 407 (446)
|+.+.+..|. .++.-..+++.+-+.+|.|+.+.+..+.-
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 8888888764 55667788888988899999988777643
No 22
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.29 E-value=2.1e-05 Score=79.91 Aligned_cols=127 Identities=28% Similarity=0.316 Sum_probs=82.6
Q ss_pred ccccccceEEEEEE-eChHHHHHHHhcCCCCcceeeEecc-CCCC-----ceeEeCCcCccceEEeeccCCCCeE-----
Q 013265 153 SFRHLTDLSLTTVG-ITGEVLEHLLCYCCPVLEVLNVAES-SSLT-----SLKVSGPSLKLKHLKLNKLDNLKDL----- 220 (446)
Q Consensus 153 ~~~~L~~L~L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c-~~~~-----~~~i~~~~~~L~~L~i~~~~~l~~~----- 220 (446)
.+++|+.|.+..+. +++..+..+... ||.|++|++..| .... ...+...+.+|++|.+..|..+.+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALK-CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhh-CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 47899999999885 666667888888 999999999874 2221 1234446688889999888754433
Q ss_pred EEECCceeEEEEcccc-cc-----cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265 221 QLHAPNLLSFEYSGPI-LP-----FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT 281 (446)
Q Consensus 221 ~i~~p~L~~l~~~~~~-~~-----~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~ 281 (446)
.-.+|+|++|.+.++. .. .....+++|+++++..+. ......+..+...+++++.|.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~-~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH-GLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc-cchHHHHHHHHHhCcchhhhhhhh
Confidence 2236888888866664 21 233457778888887652 222223335566677777766554
No 23
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.24 E-value=4.9e-05 Score=77.27 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=101.6
Q ss_pred cccccceEEEEEE--eChHHHHHHHhcCCCCcceeeEeccCCCCce---eEeCCcCccceEEeecc-CCCCeEEEECCce
Q 013265 154 FRHLTDLSLTTVG--ITGEVLEHLLCYCCPVLEVLNVAESSSLTSL---KVSGPSLKLKHLKLNKL-DNLKDLQLHAPNL 227 (446)
Q Consensus 154 ~~~L~~L~L~~~~--~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~---~i~~~~~~L~~L~i~~~-~~l~~~~i~~p~L 227 (446)
...++.+.+..+. ........+... ||.|++|.+..|..+... .+...++.|+.|.+.+| ......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------- 231 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSS-CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS------- 231 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhh-CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc-------
Confidence 4556666666554 455567778888 999999999999877652 44456678888888774 110000
Q ss_pred eEEEEcccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCccc
Q 013265 228 LSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLK 307 (446)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 307 (446)
+.........+++|+.+++..+. ......+..+...+++|+.|.+..|.. ....++......+++|+
T Consensus 232 ------~~~~~~~~~~~~~L~~l~l~~~~-~isd~~l~~l~~~c~~L~~L~l~~c~~------lt~~gl~~i~~~~~~L~ 298 (482)
T KOG1947|consen 232 ------PLLLLLLLSICRKLKSLDLSGCG-LVTDIGLSALASRCPNLETLSLSNCSN------LTDEGLVSIAERCPSLR 298 (482)
T ss_pred ------hhHhhhhhhhcCCcCccchhhhh-ccCchhHHHHHhhCCCcceEccCCCCc------cchhHHHHHHHhcCccc
Confidence 00000122234556666664442 011223335566688999999776532 12223333455678899
Q ss_pred EEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEec
Q 013265 308 HLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVS 342 (446)
Q Consensus 308 ~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~ 342 (446)
+|+|..+....+ .++..+..+||+|++|.+....
T Consensus 299 ~L~l~~c~~~~d-~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 299 ELDLSGCHGLTD-SGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred EEeeecCccchH-HHHHHHHHhCcchhhhhhhhcC
Confidence 999998864433 4677778889999998775443
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00021 Score=68.46 Aligned_cols=103 Identities=21% Similarity=0.235 Sum_probs=69.2
Q ss_pred ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEe-CCcCccceEEeeccCCCCeE-----EEEC
Q 013265 151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVS-GPSLKLKHLKLNKLDNLKDL-----QLHA 224 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~-~~~~~L~~L~i~~~~~l~~~-----~i~~ 224 (446)
...+++||+|.|.+|.++-.++..++.. ||+|+.|.|....+...-..+ .-+.+|++|++++.. +..+ ...-
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~-fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l 270 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLT-FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTL 270 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHh-CCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccc
Confidence 3468999999999999998899999999 999999999987533222111 122689999999876 2222 2234
Q ss_pred CceeEEEEcccccc-c---------ccCCCCCcceEEeccc
Q 013265 225 PNLLSFEYSGPILP-F---------SFRNVPNLVDASFWGC 255 (446)
Q Consensus 225 p~L~~l~~~~~~~~-~---------~~~~~~~L~~l~l~~~ 255 (446)
|+|+.|.+..+.++ + .....|+|+.+.++.+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence 77777776655321 1 1123466666666544
No 25
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.82 E-value=0.00051 Score=72.20 Aligned_cols=214 Identities=21% Similarity=0.213 Sum_probs=116.3
Q ss_pred cccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEE---CCceeEEEE
Q 013265 156 HLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLH---APNLLSFEY 232 (446)
Q Consensus 156 ~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~---~p~L~~l~~ 232 (446)
+++..++.........++.+. .+.|++|.|.+........... ...++... ++.+ ++ -.+|++|++
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~---~~~L~sl~LGnl~~~k~~~~~~-----~~idi~~l--L~~~-Ln~~sr~nL~~LdI 129 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLR---KQDLESLKLGNLDKIKQDYLDD-----ATIDIISL--LKDL-LNEESRQNLQHLDI 129 (699)
T ss_pred eeEEeeccceecchhHHHHHh---hccccccCCcchHhhhhhhhhh-----hhccHHHH--HHHH-HhHHHHHhhhhcCc
Confidence 566677777776666665443 3339999998765433221100 00000000 0000 01 134444444
Q ss_pred ccccc-----cccc-CCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcc
Q 013265 233 SGPIL-----PFSF-RNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNL 306 (446)
Q Consensus 233 ~~~~~-----~~~~-~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L 306 (446)
+|... +..+ .-+|+|+.+.+.+..+ ...++..+.+++|+|..|++++..+ .. ...+..++||
T Consensus 130 ~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~TnI-------~n---l~GIS~LknL 197 (699)
T KOG3665|consen 130 SGSELFSNGWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTNI-------SN---LSGISRLKNL 197 (699)
T ss_pred cccchhhccHHHHHhhhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCCc-------cC---cHHHhccccH
Confidence 44310 1111 2356777776655322 2234557888899999999888322 11 1345567888
Q ss_pred cEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHH
Q 013265 307 KHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFEL 386 (446)
Q Consensus 307 ~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~ 386 (446)
+.|.+.+-.... ...+..+ -+..+|+.|+|+....... ...+...-+|.. . |-.+.+..+.|+.=.-++
T Consensus 198 q~L~mrnLe~e~-~~~l~~L-F~L~~L~vLDIS~~~~~~~--~~ii~qYlec~~----~---LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 198 QVLSMRNLEFES-YQDLIDL-FNLKKLRVLDISRDKNNDD--TKIIEQYLECGM----V---LPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHHhccCCCCCc-hhhHHHH-hcccCCCeeeccccccccc--hHHHHHHHHhcc----c---CccccEEecCCcchhHHH
Confidence 888887664211 1233343 3478889999876533211 112222346653 2 444555566688877788
Q ss_pred HHHHHhcCccccceEEe
Q 013265 387 VMYLIFSAKLLEKIIID 403 (446)
Q Consensus 387 ~~~ll~~a~~Le~l~i~ 403 (446)
++.++..=++|+++..-
T Consensus 267 le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 267 LEELLNSHPNLQQIAAL 283 (699)
T ss_pred HHHHHHhCccHhhhhhh
Confidence 99999988888888855
No 26
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.0025 Score=58.43 Aligned_cols=219 Identities=17% Similarity=0.142 Sum_probs=125.4
Q ss_pred ccccccceEEEEEEeChH-HHHHHHhcCCCCcceeeEeccCCCCcee-EeCCcCccceEEeeccCCCCe-----EEEECC
Q 013265 153 SFRHLTDLSLTTVGITGE-VLEHLLCYCCPVLEVLNVAESSSLTSLK-VSGPSLKLKHLKLNKLDNLKD-----LQLHAP 225 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~-~l~~ll~~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~~~~l~~-----~~i~~p 225 (446)
.+..++.|+|.+..+++. .+..++.. .|.|+.|.|.+......+. .+.+..+|++|.+.+.. +.. ..-+-|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~-lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQ-LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhc-CccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcch
Confidence 578899999999999986 78899999 9999999998776555552 33566788888887754 221 122335
Q ss_pred ceeEEEEcccccc-------cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhccccccc
Q 013265 226 NLLSFEYSGPILP-------FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLH 298 (446)
Q Consensus 226 ~L~~l~~~~~~~~-------~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~ 298 (446)
.++.|.++....+ ..-.-.+.+..+....| ......+...+.+-+||+..+.+..+++.....+ +
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c-~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e-------k 218 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC-LEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE-------K 218 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCc-HHHHHHHHHhHHhhcccchheeeecCcccchhhc-------c
Confidence 5555544433111 00011123444444444 2222334457778899999999988766533111 1
Q ss_pred CCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--
Q 013265 299 DIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG-- 376 (446)
Q Consensus 299 ~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~-- 376 (446)
..-.|+.+--|.|.... .+++ .-+.-|..+|.|..|.+.-++-....+.+. +..+ . ...|..|.+.+
T Consensus 219 ~se~~p~~~~LnL~~~~-idsw-asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~e----rr~l---l--IaRL~~v~vLNGs 287 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGANN-IDSW-ASVDALNGFPQLVDLRVSENPLSDPLRGGE----RRFL---L--IARLTKVQVLNGS 287 (418)
T ss_pred cCCCCCcchhhhhcccc-cccH-HHHHHHcCCchhheeeccCCcccccccCCc----ceEE---E--EeeccceEEecCc
Confidence 22234444455555543 2333 334557889999999985442211111111 1110 0 03344444432
Q ss_pred -ee---cCcchHHHHHHHHh
Q 013265 377 -FV---GHTADFELVMYLIF 392 (446)
Q Consensus 377 -~~---g~~~e~~~~~~ll~ 392 (446)
.+ -.++|+.|++|-+.
T Consensus 288 kIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 288 KISSRERKDSERRFVRYYMS 307 (418)
T ss_pred ccchhhhhhhHHHHHHHHhh
Confidence 22 24588999999876
No 27
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.72 E-value=0.002 Score=36.40 Aligned_cols=25 Identities=44% Similarity=0.666 Sum_probs=22.8
Q ss_pred cccceEEEEEEeChH-HHHHHHhcCCC
Q 013265 156 HLTDLSLTTVGITGE-VLEHLLCYCCP 181 (446)
Q Consensus 156 ~L~~L~L~~~~~~~~-~l~~ll~~~cp 181 (446)
+||+|+|.++.+.++ .++.++++ ||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~-CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSG-CP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhcc-Cc
Confidence 589999999999876 79999999 98
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.61 E-value=0.003 Score=67.00 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=14.1
Q ss_pred cccceEEEEEEeChHHHHHHHhcCCCCcceeeEecc
Q 013265 156 HLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAES 191 (446)
Q Consensus 156 ~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c 191 (446)
+|+.|.+.+..++. +-.. .|+|+.|++.++
T Consensus 223 ~L~~L~L~~N~Lt~-----LP~l-p~~Lk~LdLs~N 252 (788)
T PRK15387 223 HITTLVIPDNNLTS-----LPAL-PPELRTLEVSGN 252 (788)
T ss_pred CCCEEEccCCcCCC-----CCCC-CCCCcEEEecCC
Confidence 45555555444332 1123 455555555554
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.57 E-value=0.0016 Score=68.95 Aligned_cols=14 Identities=36% Similarity=0.256 Sum_probs=10.1
Q ss_pred ccCCCcEEEEEeee
Q 013265 365 ELRSIRVVELLGFV 378 (446)
Q Consensus 365 ~l~~L~~v~i~~~~ 378 (446)
++.+|+.|.+.+-.
T Consensus 443 ~L~~L~~LdLs~N~ 456 (788)
T PRK15387 443 HLSSETTVNLEGNP 456 (788)
T ss_pred hccCCCeEECCCCC
Confidence 45788888887743
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.55 E-value=0.0017 Score=68.32 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=32.3
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS 192 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~ 192 (446)
-||+|++|.+.+..+..++|..+..+ +|+|+.|+++++.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~s-FpNL~sLDIS~Tn 184 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCAS-FPNLRSLDISGTN 184 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhc-cCccceeecCCCC
Confidence 47888888888888877778888888 8888888888764
No 31
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.49 E-value=6.3e-05 Score=75.06 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=9.1
Q ss_pred ccceEEecCCCCC
Q 013265 45 FSGCLNFDDPFTM 57 (446)
Q Consensus 45 ~~~~L~~~~~~~~ 57 (446)
.+..++|+.++|.
T Consensus 8 FVrGvDfsgNDFs 20 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFS 20 (1255)
T ss_pred eeecccccCCcCC
Confidence 4567778777775
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.45 E-value=0.0039 Score=53.86 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=44.5
Q ss_pred CCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHH
Q 013265 243 NVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIF 322 (446)
Q Consensus 243 ~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 322 (446)
+.-.++++++.+...... . ++-..+.+++.|+++.+.+. . ...++.+++|+.|.+..+.- .++.
T Consensus 17 n~~~~~~L~L~~n~I~~I-e---~L~~~l~~L~~L~Ls~N~I~---------~-l~~l~~L~~L~~L~L~~N~I-~~i~- 80 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI-E---NLGATLDKLEVLDLSNNQIT---------K-LEGLPGLPRLKTLDLSNNRI-SSIS- 80 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S------------TT----TT--EEE--SS----S-C-
T ss_pred cccccccccccccccccc-c---chhhhhcCCCEEECCCCCCc---------c-ccCccChhhhhhcccCCCCC-Cccc-
Confidence 444556666655422211 1 23235678888888874331 1 23466788999999988841 1110
Q ss_pred HHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEE
Q 013265 323 CIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIII 402 (446)
Q Consensus 323 l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i 402 (446)
..+..++|+|++|.+. ++...+.+.+..+..| .+|+.+.+.|-- ....-..=.|++...|+|+.+.-
T Consensus 81 -~~l~~~lp~L~~L~L~---~N~I~~l~~l~~L~~l--------~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 81 -EGLDKNLPNLQELYLS---NNKISDLNELEPLSSL--------PKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -HHHHHH-TT--EEE-T---TS---SCCCCGGGGG---------TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred -cchHHhCCcCCEEECc---CCcCCChHHhHHHHcC--------CCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 1234679999999983 3333333333333333 779999988621 11222445556666677776654
Q ss_pred ec
Q 013265 403 DP 404 (446)
Q Consensus 403 ~~ 404 (446)
..
T Consensus 148 ~~ 149 (175)
T PF14580_consen 148 QD 149 (175)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.39 E-value=0.0018 Score=68.81 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=16.0
Q ss_pred CcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265 304 CNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL 340 (446)
Q Consensus 304 ~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 340 (446)
++|+.|++..+.-. .++. .+ .++|+.|+|..
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~--~l---p~~L~~LdLs~ 376 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPE--TL---PPTITTLDVSR 376 (754)
T ss_pred CcccEEECCCCCCC-cCCh--hh---cCCcCEEECCC
Confidence 57777777766311 1111 01 25677777743
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.12 E-value=0.043 Score=53.69 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=7.3
Q ss_pred CCcceeeEeccCC
Q 013265 181 PVLEVLNVAESSS 193 (446)
Q Consensus 181 p~Le~L~L~~c~~ 193 (446)
++|+.|.+.+|..
T Consensus 94 ~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 94 EGLEKLTVCHCPE 106 (426)
T ss_pred hhhhheEccCccc
Confidence 3566666666543
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.78 E-value=0.034 Score=38.74 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=5.8
Q ss_pred CCCCCcccEEEEE
Q 013265 300 IPEMCNLKHLEII 312 (446)
Q Consensus 300 ~~~~~~L~~L~L~ 312 (446)
+..+++|++|.+.
T Consensus 45 f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 45 FSNLPNLRYLDLS 57 (61)
T ss_dssp TTTSTTESEEEET
T ss_pred HcCCCCCCEEeCc
Confidence 3344444444443
No 36
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=94.64 E-value=0.0011 Score=66.49 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=19.3
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEec
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAE 190 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~ 190 (446)
..+.+|++|.|++..+.-..+.. +.+ ..+|+.|.+++
T Consensus 170 RRL~~LqtL~Ls~NPL~hfQLrQ-LPs-mtsL~vLhms~ 206 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHFQLRQ-LPS-MTSLSVLHMSN 206 (1255)
T ss_pred HHHhhhhhhhcCCChhhHHHHhc-Ccc-chhhhhhhccc
Confidence 45667777777776655443333 223 33344444443
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=94.53 E-value=0.019 Score=61.12 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=25.6
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccC
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLD 215 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~ 215 (446)
++|+.|.|+++.++. +..-+ ..+|+.|++.++.. ..+.-.-+ ++|+.|.++++.
T Consensus 241 ~~L~~L~Ls~N~L~~--LP~~l---~s~L~~L~Ls~N~L-~~LP~~l~-~sL~~L~Ls~N~ 294 (754)
T PRK15370 241 DTIQEMELSINRITE--LPERL---PSALQSLDLFHNKI-SCLPENLP-EELRYLSVYDNS 294 (754)
T ss_pred ccccEEECcCCccCc--CChhH---hCCCCEEECcCCcc-CccccccC-CCCcEEECCCCc
Confidence 356777777665542 11101 33566676664432 22211111 356666666653
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.42 E-value=0.032 Score=51.42 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=33.1
Q ss_pred CCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC
Q 013265 245 PNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP 315 (446)
Q Consensus 245 ~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 315 (446)
..|++++++.+... .+.+-..-+|.++.|.++...+. . ...+..+++|++|+|+++.
T Consensus 284 q~LtelDLS~N~I~----~iDESvKL~Pkir~L~lS~N~i~------~----v~nLa~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 284 QELTELDLSGNLIT----QIDESVKLAPKLRRLILSQNRIR------T----VQNLAELPQLQLLDLSGNL 340 (490)
T ss_pred hhhhhccccccchh----hhhhhhhhccceeEEecccccee------e----ehhhhhcccceEeecccch
Confidence 45666666554322 22244556778888888763221 1 1235567788888888773
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.00 E-value=0.041 Score=38.34 Aligned_cols=54 Identities=33% Similarity=0.344 Sum_probs=25.2
Q ss_pred CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265 225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT 281 (446)
Q Consensus 225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~ 281 (446)
|+|++|.+.++.. +..+.++++|+.+++..+....... ..+..+++|+.|.+.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~---~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP---DAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET---TTTTTSTTESEEEETS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH---HHHcCCCCCCEEeCcC
Confidence 4555555555421 1234455555555555443322222 3445555555555544
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.63 E-value=0.13 Score=50.34 Aligned_cols=134 Identities=21% Similarity=0.241 Sum_probs=68.2
Q ss_pred cccccceEEEEEEeChHHHHHHHhcCCC-CcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265 154 FRHLTDLSLTTVGITGEVLEHLLCYCCP-VLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY 232 (446)
Q Consensus 154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp-~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~ 232 (446)
+++++.|+++++.++.- .. .| +|++|.+.+|..+..+.-.-+ ++|++|.+.+|..+..+ -++|++|.+
T Consensus 51 ~~~l~~L~Is~c~L~sL------P~-LP~sLtsL~Lsnc~nLtsLP~~LP-~nLe~L~Ls~Cs~L~sL---P~sLe~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESL------PV-LPNELTEITIENCNNLTTLPGSIP-EGLEKLTVCHCPEISGL---PESVRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCccc------CC-CCCCCcEEEccCCCCcccCCchhh-hhhhheEccCccccccc---ccccceEEe
Confidence 56777777777644321 12 33 477777777776544321112 46777777777555432 245666666
Q ss_pred cccccccccCCC-CCcceEEecccchhhhhhhhhhhhccC-CCceEEEEeecccccccchhcccccccCCCCCCcccEEE
Q 013265 233 SGPILPFSFRNV-PNLVDASFWGCFSAYIAKNLCQHSIFL-VQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLE 310 (446)
Q Consensus 233 ~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~l~~~l~~l-~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 310 (446)
.+.... .+..+ ++|+++.+........ . .+-..+ ++|+.|.+.+|... .++..+| ..|++|.
T Consensus 120 ~~n~~~-~L~~LPssLk~L~I~~~n~~~~-~---~lp~~LPsSLk~L~Is~c~~i---------~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 120 KGSATD-SIKNVPNGLTSLSINSYNPENQ-A---RIDNLISPSLKTLSLTGCSNI---------ILPEKLP--ESLQSIT 183 (426)
T ss_pred CCCCCc-ccccCcchHhheeccccccccc-c---ccccccCCcccEEEecCCCcc---------cCccccc--ccCcEEE
Confidence 543221 12333 3466666532210000 0 111122 47888888774221 1222233 5788888
Q ss_pred EEec
Q 013265 311 IIGT 314 (446)
Q Consensus 311 L~~~ 314 (446)
+..+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7654
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=0.013 Score=53.84 Aligned_cols=102 Identities=20% Similarity=0.151 Sum_probs=68.5
Q ss_pred ccccccceEEEEEEeChH-HHHHHHhcCCCCcceeeEeccCCC---CceeEeCCcCccceEEeeccCC---CCeEEEECC
Q 013265 153 SFRHLTDLSLTTVGITGE-VLEHLLCYCCPVLEVLNVAESSSL---TSLKVSGPSLKLKHLKLNKLDN---LKDLQLHAP 225 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~-~l~~ll~~~cp~Le~L~L~~c~~~---~~~~i~~~~~~L~~L~i~~~~~---l~~~~i~~p 225 (446)
+...+..|.+.++.+..+ ++..+-+. |..+++|+|.+.... ....|....|.|+.|.++..+- +....+-..
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~-~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSS-VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHH-hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 344666788888888765 67777888 999999999875421 1123334558899999987662 222333456
Q ss_pred ceeEEEEccccccc-----ccCCCCCcceEEeccc
Q 013265 226 NLLSFEYSGPILPF-----SFRNVPNLVDASFWGC 255 (446)
Q Consensus 226 ~L~~l~~~~~~~~~-----~~~~~~~L~~l~l~~~ 255 (446)
||+++.++|...++ .+.+.|.++++.++++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 89999998886543 3446677777766554
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.49 E-value=0.09 Score=57.17 Aligned_cols=99 Identities=19% Similarity=0.135 Sum_probs=50.2
Q ss_pred CCCcceeeEeccCC-CCce--eEeCCcCccceEEeeccCCCCeEEE---ECCceeEEEEccccc---ccccCCCCCcceE
Q 013265 180 CPVLEVLNVAESSS-LTSL--KVSGPSLKLKHLKLNKLDNLKDLQL---HAPNLLSFEYSGPIL---PFSFRNVPNLVDA 250 (446)
Q Consensus 180 cp~Le~L~L~~c~~-~~~~--~i~~~~~~L~~L~i~~~~~l~~~~i---~~p~L~~l~~~~~~~---~~~~~~~~~L~~l 250 (446)
||.|..|-+..... +..+ .+-...+.|+.|++++|..+..+.- +--+|++|++.+..+ |..++++..|..+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 66666666655432 1111 1111235566666666554444311 134555555555532 4455556666666
Q ss_pred EecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265 251 SFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT 281 (446)
Q Consensus 251 ~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~ 281 (446)
++......... ..+...+++|+.|.+..
T Consensus 624 nl~~~~~l~~~---~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 624 NLEVTGRLESI---PGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccccccc---cchhhhcccccEEEeec
Confidence 66543211111 25566677888888776
No 43
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.36 E-value=0.016 Score=50.33 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=43.5
Q ss_pred ceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee---EeCCcCccceEEeeccCCCCeEEE
Q 013265 159 DLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK---VSGPSLKLKHLKLNKLDNLKDLQL 222 (446)
Q Consensus 159 ~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~---i~~~~~~L~~L~i~~~~~l~~~~i 222 (446)
.++=+++.+..+++++ +.. ++.++.|++.+|..+.+.. +....++|+.|++++|+.+.+-.+
T Consensus 105 aVDAsds~I~~eGle~-L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 105 AVDASDSSIMYEGLEH-LRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred EEecCCchHHHHHHHH-Hhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence 3444445566667777 566 9999999999999877652 334557888888888886555443
No 44
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.35 E-value=0.082 Score=48.97 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=32.2
Q ss_pred cCCcCCCCChHHHHHHHh-----CCChhHHHHHhhccchhhhh
Q 013265 4 EGDHINELPDDILVNILS-----RLTMKEAVRTSIISSRWRYL 41 (446)
Q Consensus 4 ~~D~is~LPd~iL~~ILs-----~Lp~kd~~rts~lSkrWr~l 41 (446)
..+.|+.||||||..||. .++.++..++|+|||.|+..
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 446688999999999986 45679999999999999854
No 45
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.23 E-value=0.1 Score=50.41 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=32.5
Q ss_pred CCCCChHHHHHHHhCCC-hhHHHHHhhccchhhhhcc
Q 013265 8 INELPDDILVNILSRLT-MKEAVRTSIISSRWRYLWR 43 (446)
Q Consensus 8 is~LPd~iL~~ILs~Lp-~kd~~rts~lSkrWr~lw~ 43 (446)
.++||+|+|..|..+|| .-|.+|-+.|||.||..-.
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 57899999999999997 6899999999999997543
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=92.21 E-value=0.064 Score=50.01 Aligned_cols=37 Identities=32% Similarity=0.547 Sum_probs=34.5
Q ss_pred CCcCCCCC----hHHHHHHHhCCChhHHHHHhhccchhhhh
Q 013265 5 GDHINELP----DDILVNILSRLTMKEAVRTSIISSRWRYL 41 (446)
Q Consensus 5 ~D~is~LP----d~iL~~ILs~Lp~kd~~rts~lSkrWr~l 41 (446)
.|-|..|| |++-..|||+|...+..++-.+||+|+.+
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 57789999 99999999999999999999999999864
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.85 E-value=0.12 Score=47.20 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=93.5
Q ss_pred cccccccceEEEEEEeCh---HHHHHHHhcCCCCcceeeEeccCCC--CceeEeCCcCccceEEeeccCCCCeEEEECCc
Q 013265 152 SSFRHLTDLSLTTVGITG---EVLEHLLCYCCPVLEVLNVAESSSL--TSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPN 226 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~---~~l~~ll~~~cp~Le~L~L~~c~~~--~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~ 226 (446)
..||+|++.+|+...|.. +.+..++++ ...|++|.+.+|..- +.=+|. +.|.+|... +. .-+.|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~-~t~l~HL~l~NnGlGp~aG~rig---kal~~la~n-----KK-aa~kp~ 158 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISS-STDLVHLKLNNNGLGPIAGGRIG---KALFHLAYN-----KK-AADKPK 158 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhc-CCCceeEEeecCCCCccchhHHH---HHHHHHHHH-----hh-hccCCC
Confidence 467888888888877764 357788888 888888888887431 111222 122222221 11 125677
Q ss_pred eeEEEEccccc---c-----cccCCCCCcceEEecccchhhh--hhhhhhhhccCCCceEEEEeecccccccchhccccc
Q 013265 227 LLSFEYSGPIL---P-----FSFRNVPNLVDASFWGCFSAYI--AKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRY 296 (446)
Q Consensus 227 L~~l~~~~~~~---~-----~~~~~~~~L~~l~l~~~~~~~~--~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~ 296 (446)
|+++....... + ..+..-..|.++.+..+.++.. ..-..--+.-+.+|+.|+|...++...++ .++
T Consensus 159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS----~~L 234 (388)
T COG5238 159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS----RYL 234 (388)
T ss_pred ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH----HHH
Confidence 77775443311 0 0112224566776644322211 11011223557889999998865543322 233
Q ss_pred ccCCCCCCcccEEEEEecCCCCCHHHHHHHHhh-----CCCceEEEEEE
Q 013265 297 LHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEA-----APSLYKFSLKL 340 (446)
Q Consensus 297 ~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~-----~p~L~~L~l~~ 340 (446)
...++..++|+.|.+..|--.. .+...+++. .|+|..|-.++
T Consensus 235 a~al~~W~~lrEL~lnDClls~--~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSN--EGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred HHHhcccchhhhccccchhhcc--ccHHHHHHHhhhhcCCCccccccch
Confidence 3445667889999998884111 133334443 56666666543
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=91.07 E-value=0.0084 Score=50.64 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=8.5
Q ss_pred ccCCCCCCcccEEEEEec
Q 013265 297 LHDIPEMCNLKHLEIIGT 314 (446)
Q Consensus 297 ~~~~~~~~~L~~L~L~~~ 314 (446)
++.+..+..|++|++.++
T Consensus 166 pkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cHHHHHHHHHHHHhcccc
Confidence 333444455555555544
No 49
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.56 E-value=0.018 Score=52.57 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=30.5
Q ss_pred CccceEEeeccCCCCeEEE--ECCceeEEEEcccccc--cccCCCCCcceEEec
Q 013265 204 LKLKHLKLNKLDNLKDLQL--HAPNLLSFEYSGPILP--FSFRNVPNLVDASFW 253 (446)
Q Consensus 204 ~~L~~L~i~~~~~l~~~~i--~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~ 253 (446)
.+.++|..++|. +.+|.| .+|.|+.|.++-..+. -.+.+|.+|+++++.
T Consensus 19 ~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLR 71 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLR 71 (388)
T ss_pred HHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHH
Confidence 356778888887 666654 4677777777654322 234456666666663
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=90.18 E-value=0.12 Score=33.29 Aligned_cols=35 Identities=34% Similarity=0.488 Sum_probs=24.0
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS 192 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~ 192 (446)
++|++|.|.+..+++ +...++. ||+|+.|.+.++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~-l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSN-LPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTT-CTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhC-CCCCCEEEecCCC
Confidence 467888888877764 4444677 8888888888774
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=89.74 E-value=0.42 Score=41.82 Aligned_cols=103 Identities=20% Similarity=0.172 Sum_probs=58.2
Q ss_pred hhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC--CCCCHHHHHHHHhhCCCceEEEEEEecc
Q 013265 266 QHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP--KVNDLIFCIALLEAAPSLYKFSLKLVSQ 343 (446)
Q Consensus 266 ~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~l~~ll~~~p~L~~L~l~~~~~ 343 (446)
..+..++.|.+|.++..-+. ..-+.....+++|+.|.|.++. ...++. =|.+||.|+.|++...+-
T Consensus 58 ~~lp~l~rL~tLll~nNrIt--------~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~----pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRIT--------RIDPDLDTFLPNLKTLILTNNSIQELGDLD----PLASCPKLEYLTLLGNPV 125 (233)
T ss_pred ccCCCccccceEEecCCcce--------eeccchhhhccccceEEecCcchhhhhhcc----hhccCCccceeeecCCch
Confidence 34566778888888773221 1112233467889999998874 223322 357899999999966522
Q ss_pred cccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHHH
Q 013265 344 YDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMY 389 (446)
Q Consensus 344 ~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ 389 (446)
......+..--| .+.+|+++.+.+..-.+.+-....|
T Consensus 126 ---~~k~~YR~yvl~------klp~l~~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 126 ---EHKKNYRLYVLY------KLPSLRTLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred ---hcccCceeEEEE------ecCcceEeehhhhhHHHHHHHHHHh
Confidence 111111111112 2367777777776655555444444
No 52
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.69 E-value=0.088 Score=45.88 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=46.8
Q ss_pred cccccccceEEEEEE-eChHHHHHHHhcCCCCcceeeEeccCCCCceeEeC--CcCccceEEeeccC
Q 013265 152 SSFRHLTDLSLTTVG-ITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSG--PSLKLKHLKLNKLD 215 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~--~~~~L~~L~i~~~~ 215 (446)
.+++.++.|.+.+|. +.|..++.+-.. .|+|++|+|+.|..+++--+.. .+++|+.|.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~-~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGL-APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhccc-ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 356778888888887 778888888777 9999999999998766542221 33677777776554
No 53
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=87.56 E-value=0.66 Score=50.66 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=33.4
Q ss_pred hhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265 266 QHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL 340 (446)
Q Consensus 266 ~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 340 (446)
+++..+|.|+.|+|++ +.....+|..+..+-+|+.|+++... +..+..-+++...|..|++..
T Consensus 565 ~ff~~m~~LrVLDLs~--------~~~l~~LP~~I~~Li~LryL~L~~t~----I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSG--------NSSLSKLPSSIGELVHLRYLDLSDTG----ISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred HHHhhCcceEEEECCC--------CCccCcCChHHhhhhhhhcccccCCC----ccccchHHHHHHhhheecccc
Confidence 4556666666666665 22334445555556666666666553 112333344445556666543
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.50 E-value=0.021 Score=52.05 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=13.8
Q ss_pred ECCceeEEEEcccccc-----cccCCCCCcceEEe
Q 013265 223 HAPNLLSFEYSGPILP-----FSFRNVPNLVDASF 252 (446)
Q Consensus 223 ~~p~L~~l~~~~~~~~-----~~~~~~~~L~~l~l 252 (446)
.|.+|+.|++.-..++ ..+.++|+|+.+.|
T Consensus 61 rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 61 RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3455555544433211 23445555555555
No 55
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=86.62 E-value=0.063 Score=56.82 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=21.3
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEecc
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAES 191 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c 191 (446)
+++.|..|.+.+..++|..+. ++-+ .++|+.|.|.+.
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p-~l~~-~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFP-VLVN-FKHLKVLHLSYN 393 (1081)
T ss_pred hhHHHHHHHHhcCcccccchh-hhcc-ccceeeeeeccc
Confidence 345566666666666655443 3445 666666666655
No 56
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=86.24 E-value=1 Score=43.42 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=67.2
Q ss_pred CCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccC
Q 013265 224 APNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHD 299 (446)
Q Consensus 224 ~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~ 299 (446)
-|+|+.+++++..+ .-.+..+..+++++++.+.+.+... ..++.+++|+.|+|.+.-+ . ...+..
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~---~~f~~ls~L~tL~L~~N~i-------t-~~~~~a 341 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS---GMFQGLSGLKTLSLYDNQI-------T-TVAPGA 341 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH---HhhhccccceeeeecCCee-------E-EEeccc
Confidence 37889998888743 2356788899999998887766655 7889999999999998322 1 112345
Q ss_pred CCCCCcccEEEEEecC--CCCCHHHHHHHHhh
Q 013265 300 IPEMCNLKHLEIIGTP--KVNDLIFCIALLEA 329 (446)
Q Consensus 300 ~~~~~~L~~L~L~~~~--~~~~~~~l~~ll~~ 329 (446)
+.....|.+|.|-.+. -...+.++..-+++
T Consensus 342 F~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred ccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 5667788888888775 23445677776665
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.05 E-value=0.57 Score=42.92 Aligned_cols=178 Identities=16% Similarity=0.110 Sum_probs=94.3
Q ss_pred cccccceEEEEEEe---ChH------HHHHHHhcCCCCcceeeEeccC-CCCce----eEeCCcCccceEEeeccCCCCe
Q 013265 154 FRHLTDLSLTTVGI---TGE------VLEHLLCYCCPVLEVLNVAESS-SLTSL----KVSGPSLKLKHLKLNKLDNLKD 219 (446)
Q Consensus 154 ~~~L~~L~L~~~~~---~~~------~l~~ll~~~cp~Le~L~L~~c~-~~~~~----~i~~~~~~L~~L~i~~~~~l~~ 219 (446)
-.+|+...++.... .++ .+...+.+ ||.|+..+|++.- +.+.+ ..-++...|++|.+.+|. +..
T Consensus 57 ~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk-cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp 134 (388)
T COG5238 57 VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK-CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGP 134 (388)
T ss_pred hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc-CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCc
Confidence 34566555555432 122 24556678 9999999998653 33222 122223567777777765 222
Q ss_pred EEEE--CCceeEEEEcccccccccCCCCCcceEEecccchhhhhhh-hhhhhccCCCceEEEEeecccccccchhccccc
Q 013265 220 LQLH--APNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKN-LCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRY 296 (446)
Q Consensus 220 ~~i~--~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~ 296 (446)
+.-. +..|..|.+. -...+.|.|+.+....+.+...... +...++.-.+++.+.+....+...+. ....
T Consensus 135 ~aG~rigkal~~la~n-----KKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv--~~L~- 206 (388)
T COG5238 135 IAGGRIGKALFHLAYN-----KKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV--TMLA- 206 (388)
T ss_pred cchhHHHHHHHHHHHH-----hhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh--HHHH-
Confidence 2100 0111111111 1234677888877755433222221 22344555688888888743321100 0000
Q ss_pred ccCCCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 297 LHDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 297 ~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
...+..+.+|+.|+|..+. ....-..+...+...|.|+.|.+..+
T Consensus 207 ~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 207 FLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 1234567899999998775 22233456677788888888888544
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=85.96 E-value=0.44 Score=41.70 Aligned_cols=91 Identities=21% Similarity=0.235 Sum_probs=57.0
Q ss_pred cCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCH
Q 013265 241 FRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDL 320 (446)
Q Consensus 241 ~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 320 (446)
+.++++|..+.++.+.+-.... .+...+|++..|.|.+..++. ......+..||.|++|++..+.....-
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p---~L~~~~p~l~~L~LtnNsi~~-------l~dl~pLa~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDP---DLDTFLPNLKTLILTNNSIQE-------LGDLDPLASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred CCCccccceEEecCCcceeecc---chhhhccccceEEecCcchhh-------hhhcchhccCCccceeeecCCchhccc
Confidence 4456677777776543333333 455677889999998854432 122334667889999999888522111
Q ss_pred HHHHHHHhhCCCceEEEEEEe
Q 013265 321 IFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 321 ~~l~~ll~~~p~L~~L~l~~~ 341 (446)
.-=..++...|+|+.|+.+-.
T Consensus 130 ~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 130 NYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CceeEEEEecCcceEeehhhh
Confidence 112346778899999998644
No 59
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.91 E-value=0.41 Score=26.80 Aligned_cols=17 Identities=29% Similarity=0.706 Sum_probs=13.0
Q ss_pred CCCcceeeEeccCCCCc
Q 013265 180 CPVLEVLNVAESSSLTS 196 (446)
Q Consensus 180 cp~Le~L~L~~c~~~~~ 196 (446)
||.|++|+|.+|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 77888888888876654
No 60
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=85.61 E-value=0.019 Score=48.59 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=18.1
Q ss_pred CCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265 299 DIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL 340 (446)
Q Consensus 299 ~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 340 (446)
....+.+|+.|.+..+ +...+..-+.....|++|+|+.
T Consensus 145 dvg~lt~lqil~lrdn----dll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDN----DLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhhcceeEEeeccC----chhhCcHHHHHHHHHHHHhccc
Confidence 3344455555544433 3334444444455566666643
No 61
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=83.46 E-value=0.2 Score=53.27 Aligned_cols=79 Identities=24% Similarity=0.309 Sum_probs=39.8
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEE----CCcee
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLH----APNLL 228 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~----~p~L~ 228 (446)
+++.|+.|.|++..++. +..-++. |+.|+.|...........++.. ++.|+.++++... +..+.+. .|+|+
T Consensus 405 kle~LeeL~LSGNkL~~--Lp~tva~-~~~L~tL~ahsN~l~~fPe~~~-l~qL~~lDlS~N~-L~~~~l~~~~p~p~Lk 479 (1081)
T KOG0618|consen 405 KLEELEELNLSGNKLTT--LPDTVAN-LGRLHTLRAHSNQLLSFPELAQ-LPQLKVLDLSCNN-LSEVTLPEALPSPNLK 479 (1081)
T ss_pred chHHhHHHhcccchhhh--hhHHHHh-hhhhHHHhhcCCceeechhhhh-cCcceEEecccch-hhhhhhhhhCCCcccc
Confidence 34444444455444332 1122344 5555555555443333333332 2677777776554 5544332 26788
Q ss_pred EEEEcccc
Q 013265 229 SFEYSGPI 236 (446)
Q Consensus 229 ~l~~~~~~ 236 (446)
+|+++|..
T Consensus 480 yLdlSGN~ 487 (1081)
T KOG0618|consen 480 YLDLSGNT 487 (1081)
T ss_pred eeeccCCc
Confidence 88887764
No 62
>PF13013 F-box-like_2: F-box-like domain
Probab=81.60 E-value=1.1 Score=35.24 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=29.7
Q ss_pred cCCCCChHHHHHHHhCCChhHHHHHhhccc--h-hhhh-cc
Q 013265 7 HINELPDDILVNILSRLTMKEAVRTSIISS--R-WRYL-WR 43 (446)
Q Consensus 7 ~is~LPd~iL~~ILs~Lp~kd~~rts~lSk--r-Wr~l-w~ 43 (446)
.+.+||+||+..|+.+-...+...+...++ | |++. |.
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~ 61 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWY 61 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999999999988887766 4 4443 55
No 63
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=81.57 E-value=0.86 Score=42.33 Aligned_cols=215 Identities=17% Similarity=0.159 Sum_probs=107.3
Q ss_pred HHHHHHhcCCCCcceeeEeccCCC-Cc---------eeEeCCcCccceEEeeccC--CCCeEEEECCceeEEEEcccccc
Q 013265 171 VLEHLLCYCCPVLEVLNVAESSSL-TS---------LKVSGPSLKLKHLKLNKLD--NLKDLQLHAPNLLSFEYSGPILP 238 (446)
Q Consensus 171 ~l~~ll~~~cp~Le~L~L~~c~~~-~~---------~~i~~~~~~L~~L~i~~~~--~l~~~~i~~p~L~~l~~~~~~~~ 238 (446)
++.+++.- |..|..|.+....+- +. +.+. .+.+|+.+.++.|. ++..+...-|.|.++........
T Consensus 173 d~~hildf-~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~-~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 173 DFSHVLDF-CTQLVALVVTPVKDPIDRSNIIPNRLSFNLN-AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred chHHHHHh-hhheeEEEecCCCCCCccccccccccccchH-HhhhhheeeeeccchhheeceeecCchhheeeeeccccc
Confidence 57777777 788888888765432 11 1111 22678888888876 35555666688888765543221
Q ss_pred cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCC
Q 013265 239 FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVN 318 (446)
Q Consensus 239 ~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 318 (446)
..-.-+|.-...+......+-..-.+...+.....++.|+|++..+ ..+..+..-.|.++.|.++.++- .
T Consensus 251 ~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I---------~~iDESvKL~Pkir~L~lS~N~i-~ 320 (490)
T KOG1259|consen 251 DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLI---------TQIDESVKLAPKLRRLILSQNRI-R 320 (490)
T ss_pred ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccch---------hhhhhhhhhccceeEEeccccce-e
Confidence 1000111111111111100000000112223445688888887322 22233445578999999998851 1
Q ss_pred CHHHHHHHHhhCCCceEEEEEEecccccccc----cccccc------cCCCCccccccCCCcEEEEEeeecCcchHHHHH
Q 013265 319 DLIFCIALLEAAPSLYKFSLKLVSQYDYESY----ESVKTI------KDQPYLSFTELRSIRVVELLGFVGHTADFELVM 388 (446)
Q Consensus 319 ~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~----~~~~~~------p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~ 388 (446)
. +.=|+..|+|..|+++...-..+..| |++..+ .+-+. ....+.+|..+.+.+-+ ..+++-+.
T Consensus 321 ~----v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~--Ie~ldeV~ 393 (490)
T KOG1259|consen 321 T----VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ--IEELDEVN 393 (490)
T ss_pred e----ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccc--hhhHHHhc
Confidence 1 11156789999999976422122222 111110 11110 11133444444443321 24555555
Q ss_pred HHHhcCccccceEEecC
Q 013265 389 YLIFSAKLLEKIIIDPC 405 (446)
Q Consensus 389 ~ll~~a~~Le~l~i~~~ 405 (446)
.| ++.|.||.+.+..+
T Consensus 394 ~I-G~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 394 HI-GNLPCLETLRLTGN 409 (490)
T ss_pred cc-ccccHHHHHhhcCC
Confidence 55 77888888777654
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.55 E-value=0.26 Score=44.67 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=8.1
Q ss_pred ECCceeEEEEcccc
Q 013265 223 HAPNLLSFEYSGPI 236 (446)
Q Consensus 223 ~~p~L~~l~~~~~~ 236 (446)
.||+|+++.+++..
T Consensus 89 ~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNK 102 (260)
T ss_pred hCCceeEEeecCCc
Confidence 45666666665553
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=81.30 E-value=1.6 Score=28.08 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=19.1
Q ss_pred CCcceeeEeccCCCCceeEeCCcCccceEEeeccC
Q 013265 181 PVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLD 215 (446)
Q Consensus 181 p~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~ 215 (446)
|+|++|++.++....-...-..+++|+.|.++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 56788888777433221212344667777776664
No 66
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.36 E-value=0.36 Score=46.61 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=27.7
Q ss_pred CCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 300 IPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 300 ~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
+.++.||+.|++..+ ++..+..++++|.+|++|++.+.
T Consensus 501 l~nm~nL~tLDL~nN----dlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNN----DLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhhhhhcceeccCCC----chhhCChhhccccceeEEEecCC
Confidence 556778888887765 45667777888888888888543
No 67
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.42 E-value=0.033 Score=53.43 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=40.1
Q ss_pred ccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEec
Q 013265 240 SFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGT 314 (446)
Q Consensus 240 ~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 314 (446)
.++++..|.+++++.+......+ +..++++++..|++...-+ ..+|..+..+.+|..|+++++
T Consensus 223 ef~gcs~L~Elh~g~N~i~~lpa---e~~~~L~~l~vLDLRdNkl---------ke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEMLPA---EHLKHLNSLLVLDLRDNKL---------KEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred CCCccHHHHHHHhcccHHHhhHH---HHhcccccceeeecccccc---------ccCchHHHHhhhhhhhcccCC
Confidence 67777888888887665554444 6777888999999887322 122333334556666666655
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=78.31 E-value=0.73 Score=45.57 Aligned_cols=141 Identities=22% Similarity=0.219 Sum_probs=81.0
Q ss_pred cccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE--ECCc-eeEEEE
Q 013265 156 HLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL--HAPN-LLSFEY 232 (446)
Q Consensus 156 ~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i--~~p~-L~~l~~ 232 (446)
+|+.|++.+..+... ..-+.. +|.|+.|.+.++............+.|+.|.+++.. +..+.. ..++ |+++.+
T Consensus 141 nL~~L~l~~N~i~~l--~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIESL--PSPLRN-LPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchhhh--hhhhhc-cccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhh
Confidence 788888888776542 112556 888888888888655443332122678888887775 555543 2344 777766
Q ss_pred cccc---cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEE
Q 013265 233 SGPI---LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHL 309 (446)
Q Consensus 233 ~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 309 (446)
.+.. ....+.+...+..+.+...... .+...+..+++++.|.+...-+ ..+.. +....+|+.|
T Consensus 217 ~~N~~~~~~~~~~~~~~l~~l~l~~n~~~----~~~~~~~~l~~l~~L~~s~n~i---------~~i~~-~~~~~~l~~L 282 (394)
T COG4886 217 SNNSIIELLSSLSNLKNLSGLELSNNKLE----DLPESIGNLSNLETLDLSNNQI---------SSISS-LGSLTNLREL 282 (394)
T ss_pred cCCcceecchhhhhcccccccccCCceee----eccchhccccccceeccccccc---------ccccc-ccccCccCEE
Confidence 6551 2233444555555544332111 1125556777788888776311 11111 5567788888
Q ss_pred EEEec
Q 013265 310 EIIGT 314 (446)
Q Consensus 310 ~L~~~ 314 (446)
.+...
T Consensus 283 ~~s~n 287 (394)
T COG4886 283 DLSGN 287 (394)
T ss_pred eccCc
Confidence 88765
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.30 E-value=1.4 Score=40.09 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=50.5
Q ss_pred CCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC--CCCCH
Q 013265 243 NVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP--KVNDL 320 (446)
Q Consensus 243 ~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~ 320 (446)
.+|.|+++.+++++.. ....+..+...+|++++|.+++..+.+ ..-...++.+.||..|.+..|. ...+.
T Consensus 63 ~Lp~LkkL~lsdn~~~-~~~~l~vl~e~~P~l~~l~ls~Nki~~-------lstl~pl~~l~nL~~Ldl~n~~~~~l~dy 134 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRR-VSGGLEVLAEKAPNLKVLNLSGNKIKD-------LSTLRPLKELENLKSLDLFNCSVTNLDDY 134 (260)
T ss_pred CcchhhhhcccCCccc-ccccceehhhhCCceeEEeecCCcccc-------ccccchhhhhcchhhhhcccCCccccccH
Confidence 4556666666554221 111222455566889999888843321 1112345678889999998885 22222
Q ss_pred HHHHHHHhhCCCceEEEEEEe
Q 013265 321 IFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 321 ~~l~~ll~~~p~L~~L~l~~~ 341 (446)
=..+++-.|+|+.|+-...
T Consensus 135 --re~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 135 --REKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred --HHHHHHHhhhhcccccccc
Confidence 2345566778877765443
No 70
>PLN03150 hypothetical protein; Provisional
Probab=77.00 E-value=2.3 Score=44.91 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=48.1
Q ss_pred eeEEEEcccc----cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265 227 LLSFEYSGPI----LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE 302 (446)
Q Consensus 227 L~~l~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
++.|++.+.. .+..+.++++|+.+++..+.+....+ ..+..+++|+.|+|+.+.+ .+..+..+..
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP---~~~~~l~~L~~LdLs~N~l--------sg~iP~~l~~ 488 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP---PSLGSITSLEVLDLSYNSF--------NGSIPESLGQ 488 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC---hHHhCCCCCCEEECCCCCC--------CCCCchHHhc
Confidence 4555555442 23456677888888887654332222 4567788888888877422 1233455667
Q ss_pred CCcccEEEEEecC
Q 013265 303 MCNLKHLEIIGTP 315 (446)
Q Consensus 303 ~~~L~~L~L~~~~ 315 (446)
+++|+.|+|..+.
T Consensus 489 L~~L~~L~Ls~N~ 501 (623)
T PLN03150 489 LTSLRILNLNGNS 501 (623)
T ss_pred CCCCCEEECcCCc
Confidence 7888888888774
No 71
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=75.06 E-value=0.43 Score=49.59 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=35.3
Q ss_pred cCCCcceEEEEEecCCcch----HHHHHHHHHHcCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEE
Q 013265 91 EGHCTEELRICFDVFSNHD----IDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVG 166 (446)
Q Consensus 91 ~~~~l~~l~l~~~~~~~~~----~~~wi~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~ 166 (446)
.|++++.|+.......+.. +...+.+.. .++.+.+..... .++.. |..+ ..|..||.|.|++|.
T Consensus 53 ~g~~~~~f~a~~s~~ads~vl~qLq~i~d~lq--kt~~lkl~~~pa------~~pt~-pi~i---fpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 53 SGAPVDYFRAYVSDNADSRVLEQLQRILDFLQ--KTKVLKLLPSPA------RDPTE-PISI---FPFRSLRVLELRGCD 120 (1096)
T ss_pred CCCCCceeEEecCCcccchHHHHHHHHHHHHh--hheeeeecccCC------CCCCC-Ccee---ccccceeeEEecCcc
Confidence 5567888877554443332 222222222 344444422221 11122 4333 367899999999998
Q ss_pred eCh
Q 013265 167 ITG 169 (446)
Q Consensus 167 ~~~ 169 (446)
+..
T Consensus 121 L~~ 123 (1096)
T KOG1859|consen 121 LST 123 (1096)
T ss_pred hhh
Confidence 764
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=74.56 E-value=1.4 Score=45.26 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=35.0
Q ss_pred CCcCCCCChHHHHHHHhCCChhHHHHHhhccchhhhh
Q 013265 5 GDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYL 41 (446)
Q Consensus 5 ~D~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~l 41 (446)
.|-|+.||-++...|+++|+.|+.++.+.+|+.|+.+
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 6889999999999999999999999999999999864
No 73
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=72.36 E-value=4.4 Score=26.94 Aligned_cols=36 Identities=39% Similarity=0.547 Sum_probs=30.0
Q ss_pred CcccEEEEEec-CCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 304 CNLKHLEIIGT-PKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 304 ~~L~~L~L~~~-~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
.+|+.+.+.+. +...+..-+..++++++.||++.|.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 68999999865 4556677788899999999999985
No 74
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=70.19 E-value=0.26 Score=51.11 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=24.7
Q ss_pred cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265 154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS 192 (446)
Q Consensus 154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~ 192 (446)
+|.|+.|+|++..+++-+ .+.. ||.|+.|+|.+..
T Consensus 186 l~ale~LnLshNk~~~v~---~Lr~-l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD---NLRR-LPKLKHLDLSYNC 220 (1096)
T ss_pred HHHhhhhccchhhhhhhH---HHHh-cccccccccccch
Confidence 567788888888777654 2455 8888888887643
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=69.80 E-value=1.5 Score=23.81 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=11.9
Q ss_pred ccccceEEEEEEeChHHHHH
Q 013265 155 RHLTDLSLTTVGITGEVLEH 174 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ 174 (446)
++|++|+|+++.++++++..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 56777777777777665554
No 76
>PLN03150 hypothetical protein; Provisional
Probab=69.27 E-value=4.4 Score=42.77 Aligned_cols=81 Identities=12% Similarity=0.016 Sum_probs=51.8
Q ss_pred cceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHH
Q 013265 247 LVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIAL 326 (446)
Q Consensus 247 L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l 326 (446)
+..+++..+.+..... .-+..+++|+.|.|+++.+ .+.++..+..+++|+.|+|..+.-... +...
T Consensus 420 v~~L~L~~n~L~g~ip---~~i~~L~~L~~L~Ls~N~l--------~g~iP~~~~~l~~L~~LdLs~N~lsg~---iP~~ 485 (623)
T PLN03150 420 IDGLGLDNQGLRGFIP---NDISKLRHLQSINLSGNSI--------RGNIPPSLGSITSLEVLDLSYNSFNGS---IPES 485 (623)
T ss_pred EEEEECCCCCccccCC---HHHhCCCCCCEEECCCCcc--------cCcCChHHhCCCCCCEEECCCCCCCCC---CchH
Confidence 4555555443322222 4566788999999987422 123455567789999999988853222 2345
Q ss_pred HhhCCCceEEEEEEe
Q 013265 327 LEAAPSLYKFSLKLV 341 (446)
Q Consensus 327 l~~~p~L~~L~l~~~ 341 (446)
+.++++|+.|+++..
T Consensus 486 l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 486 LGQLTSLRILNLNGN 500 (623)
T ss_pred HhcCCCCCEEECcCC
Confidence 678899999998654
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=62.66 E-value=6 Score=19.56 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=4.5
Q ss_pred CcceeeEeccC
Q 013265 182 VLEVLNVAESS 192 (446)
Q Consensus 182 ~Le~L~L~~c~ 192 (446)
+|+.|++.+|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 44555555443
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=57.44 E-value=12 Score=29.97 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=3.3
Q ss_pred CCCcceeeEe
Q 013265 180 CPVLEVLNVA 189 (446)
Q Consensus 180 cp~Le~L~L~ 189 (446)
|+.|+.+.+.
T Consensus 11 ~~~l~~i~~~ 20 (129)
T PF13306_consen 11 CSNLESITFP 20 (129)
T ss_dssp -TT--EEEET
T ss_pred CCCCCEEEEC
Confidence 5555554443
No 79
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=51.83 E-value=2.6 Score=41.58 Aligned_cols=165 Identities=21% Similarity=0.210 Sum_probs=90.0
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCC-CCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE---ECCce
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCC-PVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL---HAPNL 227 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~c-p~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i---~~p~L 227 (446)
.+..++.|.+.+..+++- ...... . ++|+.|++.+....... .+. .++.|+.|.+..+. +..+.- ..++|
T Consensus 114 ~~~~l~~L~l~~n~i~~i--~~~~~~-~~~nL~~L~l~~N~i~~l~~~~~-~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 114 ELTNLTSLDLDNNNITDI--PPLIGL-LKSNLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred cccceeEEecCCcccccC--cccccc-chhhcccccccccchhhhhhhhh-ccccccccccCCch-hhhhhhhhhhhhhh
Confidence 456788888887776542 222223 4 27888888766543321 222 23778888888877 554432 67888
Q ss_pred eEEEEcccccc---cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCC
Q 013265 228 LSFEYSGPILP---FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC 304 (446)
Q Consensus 228 ~~l~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (446)
+.+.+.+..+. ........|+++.+.... .......+..+.++..|.+... ............+
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~----~~~~~~~~~~~~~l~~l~l~~n---------~~~~~~~~~~~l~ 255 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNS----IIELLSSLSNLKNLSGLELSNN---------KLEDLPESIGNLS 255 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCc----ceecchhhhhcccccccccCCc---------eeeeccchhcccc
Confidence 88888777432 111233337776665441 0101123344555555553331 1111134455667
Q ss_pred cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265 305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL 340 (446)
Q Consensus 305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 340 (446)
+++.|.+..+.-. + +.. +....+++.|++..
T Consensus 256 ~l~~L~~s~n~i~-~---i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 256 NLETLDLSNNQIS-S---ISS-LGSLTNLRELDLSG 286 (394)
T ss_pred ccceecccccccc-c---ccc-ccccCccCEEeccC
Confidence 7888888877411 1 111 56677888888854
No 80
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=51.22 E-value=22 Score=25.28 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=30.2
Q ss_pred CcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEec
Q 013265 304 CNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLVS 342 (446)
Q Consensus 304 ~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~~ 342 (446)
.+|+.+.+.... ...+...+..+++++|.||++.|....
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 457888887663 556667788899999999999997653
No 81
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=40.37 E-value=24 Score=27.03 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.0
Q ss_pred CcCCCCChHHHHHHHhCCChhHHHH
Q 013265 6 DHINELPDDILVNILSRLTMKEAVR 30 (446)
Q Consensus 6 D~is~LPd~iL~~ILs~Lp~kd~~r 30 (446)
..++.||-|+-..||++|+.+|...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 4578899999999999999998754
No 82
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=37.99 E-value=22 Score=32.61 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=36.6
Q ss_pred CcCCCCChHHHHHHHhCCC-hhHHHHHhhccchh------hhhcccccceEEecCCCC
Q 013265 6 DHINELPDDILVNILSRLT-MKEAVRTSIISSRW------RYLWRGFSGCLNFDDPFT 56 (446)
Q Consensus 6 D~is~LPd~iL~~ILs~Lp-~kd~~rts~lSkrW------r~lw~~~~~~L~~~~~~~ 56 (446)
--+.+||.+++..|+.+|| -+|.+.++.+--.- |.+|+ .+...+|....+
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWk-kLcqfHF~erQi 256 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWK-KLCQFHFNERQI 256 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHH-HHHHHHhhHHHH
Confidence 3588999999999999999 79998888763322 34566 555566766544
No 83
>PF08187 Tetradecapep: Myoactive tetradecapeptides family; InterPro: IPR012619 This entry consists of myoactive tetradecapeptides that are isolated from the gut of Earthworms, Eisenia foetida (Common brandling worm) and Pheretima vittata (Earthworm). These peptides were termed ETP and PTP respectively. Both peptides showed a potent excitatory action on spontaneous contractions of the anterior gut. These peptides show similarity to Molluscan tetradecapeptides and Arthropodan tridecapeptides [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=34.68 E-value=14 Score=16.87 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=6.2
Q ss_pred CCcCCcCCC
Q 013265 2 RSEGDHINE 10 (446)
Q Consensus 2 ~~~~D~is~ 10 (446)
+++.||||.
T Consensus 4 dg~adrish 12 (14)
T PF08187_consen 4 DGSADRISH 12 (14)
T ss_pred ccchhhhhc
Confidence 466788874
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=34.67 E-value=21 Score=20.19 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=16.4
Q ss_pred ccccceEEEEEEeChHHHHHH
Q 013265 155 RHLTDLSLTTVGITGEVLEHL 175 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~l 175 (446)
++|++|+|++..+.+++...+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 578899999988888766554
No 85
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=32.95 E-value=13 Score=35.08 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=32.1
Q ss_pred CCCCChHHHHHHHhCCChhHHHHHhhccchhhhhcc
Q 013265 8 INELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR 43 (446)
Q Consensus 8 is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~ 43 (446)
+-.+|+++++.|++++.-+++.++|.+|||-..+-.
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s 43 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGS 43 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhh
Confidence 457999999999999999999999999999986533
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.40 E-value=1.2e+02 Score=31.24 Aligned_cols=89 Identities=25% Similarity=0.251 Sum_probs=53.9
Q ss_pred CCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCC---
Q 013265 243 NVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVND--- 319 (446)
Q Consensus 243 ~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--- 319 (446)
+.|.+..+.++.+.. +....+..+.+..|+|+.|.|........ ...+.. --....|++|.+.++.-..+
T Consensus 216 n~p~i~sl~lsnNrL-~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~-----K~k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRL-YHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELD-----KLKGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred CCcceeeeecccchh-hchhhhhHHHHhcchhheeecccchhhhc-chhhhh-----hhcCCCHHHeeecCCccccchhh
Confidence 556677777765532 22334557888899999999998422111 111111 11346789999998851111
Q ss_pred -HHHHHHHHhhCCCceEEEE
Q 013265 320 -LIFCIALLEAAPSLYKFSL 338 (446)
Q Consensus 320 -~~~l~~ll~~~p~L~~L~l 338 (446)
...+..+-+.+|+|..|+=
T Consensus 289 ~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred hHHHHHHHHHhcchheeecC
Confidence 2345567778999988863
No 87
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=30.01 E-value=9.7 Score=31.51 Aligned_cols=55 Identities=25% Similarity=0.278 Sum_probs=39.1
Q ss_pred cccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeC
Q 013265 142 YTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSG 201 (446)
Q Consensus 142 ~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~ 201 (446)
-++|..+ ...||.+++|+|.+..+.+-.-+ ++. .|.|+.|.+++.......++-.
T Consensus 66 k~fp~kf--t~kf~t~t~lNl~~neisdvPeE--~Aa-m~aLr~lNl~~N~l~~~p~vi~ 120 (177)
T KOG4579|consen 66 KKFPKKF--TIKFPTATTLNLANNEISDVPEE--LAA-MPALRSLNLRFNPLNAEPRVIA 120 (177)
T ss_pred hhCCHHH--hhccchhhhhhcchhhhhhchHH--Hhh-hHHhhhcccccCccccchHHHH
Confidence 4566543 34688999999999887754333 778 9999999998877655555444
No 88
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=26.18 E-value=15 Score=36.70 Aligned_cols=99 Identities=21% Similarity=0.178 Sum_probs=52.8
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEE--CCceeE
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLH--APNLLS 229 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~--~p~L~~ 229 (446)
..+.+|+.|.+.+..+.. +..++.. |++|+.|++.+........+.. +..|+.|.+.++. +..+.-. .++|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~~--i~~~l~~-~~~L~~L~ls~N~I~~i~~l~~-l~~L~~L~l~~N~-i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK--IENLLSS-LVNLQVLDLSFNKITKLEGLST-LTLLKELNLSGNL-ISDISGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchhh--cccchhh-hhcchheeccccccccccchhh-ccchhhheeccCc-chhccCCccchhhhc
Confidence 356777777777766543 2222555 8888888887654322222222 2447777777665 3333211 455666
Q ss_pred EEEcccccc-cc---cCCCCCcceEEeccc
Q 013265 230 FEYSGPILP-FS---FRNVPNLVDASFWGC 255 (446)
Q Consensus 230 l~~~~~~~~-~~---~~~~~~L~~l~l~~~ 255 (446)
+++.+.... .. ...+.+++.+.+..+
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 665555321 11 245555666555443
No 89
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=23.09 E-value=3.5e+02 Score=20.87 Aligned_cols=70 Identities=20% Similarity=0.393 Sum_probs=40.5
Q ss_pred HhCCC--hhHHHHH---hhccchhhhhcccccceEEecCCCCCCCCCCc---cccCCCCCchhhHhHHHHHHHHHHHhcc
Q 013265 20 LSRLT--MKEAVRT---SIISSRWRYLWRGFSGCLNFDDPFTMANSKWP---HLNLKSGPINVERHKFVNWVNQVLSSLE 91 (446)
Q Consensus 20 Ls~Lp--~kd~~rt---s~lSkrWr~lw~~~~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~L~~~~ 91 (446)
||+|| +.+-++. .++++.| .|.+.|.+..-...+.|. .++.+. ....++..-+++.+..|+
T Consensus 6 ~sylp~lt~~~i~~QI~yll~qG~-------~~~lE~ad~~~~~~~yW~mwklP~f~~----~d~~~Vl~ei~~C~~~~p 74 (99)
T cd03527 6 FSYLPPLTDEQIAKQIDYIISNGW-------APCLEFTEPEHYDNRYWTMWKLPMFGC----TDPAQVLREIEACRKAYP 74 (99)
T ss_pred cccCCCCCHHHHHHHHHHHHhCCC-------EEEEEcccCCCCCCCEEeeccCCCCCC----CCHHHHHHHHHHHHHHCC
Confidence 56666 2333332 2556666 367788776555555443 222222 225677788999999998
Q ss_pred CCCcceEEE
Q 013265 92 GHCTEELRI 100 (446)
Q Consensus 92 ~~~l~~l~l 100 (446)
+.-||-+.+
T Consensus 75 ~~YVRliG~ 83 (99)
T cd03527 75 DHYVRVVGF 83 (99)
T ss_pred CCeEEEEEE
Confidence 764554443
No 90
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=22.46 E-value=20 Score=35.75 Aligned_cols=77 Identities=23% Similarity=0.179 Sum_probs=39.3
Q ss_pred cccccccceEEEEEEeChH-HHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE----ECCc
Q 013265 152 SSFRHLTDLSLTTVGITGE-VLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL----HAPN 226 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~-~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~ 226 (446)
.++++|+.|.|++..+++- . ++. ++.|+.|.+.++.....-.+.. +..|+.+.+.++. +..+.. ..++
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~~----l~~-l~~L~~L~l~~N~i~~~~~~~~-l~~L~~l~l~~n~-i~~ie~~~~~~~~~ 187 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLEG----LST-LTLLKELNLSGNLISDISGLES-LKSLKLLDLSYNR-IVDIENDELSELIS 187 (414)
T ss_pred hhhhcchheeccccccccccc----hhh-ccchhhheeccCcchhccCCcc-chhhhcccCCcch-hhhhhhhhhhhccc
Confidence 4567777777777666542 2 233 5667777777654322111111 3566666666655 222222 2345
Q ss_pred eeEEEEccc
Q 013265 227 LLSFEYSGP 235 (446)
Q Consensus 227 L~~l~~~~~ 235 (446)
++.+.+.+.
T Consensus 188 l~~l~l~~n 196 (414)
T KOG0531|consen 188 LEELDLGGN 196 (414)
T ss_pred hHHHhccCC
Confidence 555554444
No 91
>COG0864 NikR Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]
Probab=22.45 E-value=38 Score=27.88 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=29.8
Q ss_pred cCCcCC-CCChHHHHHHHhCCC----------hhHHHHHhhccchhhhhc
Q 013265 4 EGDHIN-ELPDDILVNILSRLT----------MKEAVRTSIISSRWRYLW 42 (446)
Q Consensus 4 ~~D~is-~LPd~iL~~ILs~Lp----------~kd~~rts~lSkrWr~lw 42 (446)
+.-||| .||++++.++=...- ++||+|+-+.-++|++.-
T Consensus 3 ~~~RisVSLp~~Ll~elD~~i~~rg~~sRSE~IrdAir~yl~e~~~~~~~ 52 (136)
T COG0864 3 AMMRISVSLPEELLEELDELIEERGYSSRSELIRDALREYLEEYRWLEDI 52 (136)
T ss_pred ceEEEEEECcHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhccc
Confidence 345677 599999987543333 689999999999999754
No 92
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=20.95 E-value=35 Score=33.41 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=8.9
Q ss_pred hccCCCceEEEEee
Q 013265 268 SIFLVQLHTLKLDT 281 (446)
Q Consensus 268 l~~l~~l~~L~L~~ 281 (446)
+..+++|++|.|++
T Consensus 270 f~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN 283 (498)
T ss_pred HhhcccceEeccCC
Confidence 45666666666665
Done!