Query 013265
Match_columns 446
No_of_seqs 170 out of 1886
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 07:19:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.8 1.9E-21 6.6E-26 201.4 9.9 212 4-252 2-242 (594)
2 3ogk_B Coronatine-insensitive 99.8 9.7E-20 3.3E-24 188.6 15.4 43 1-43 1-49 (592)
3 2ast_B S-phase kinase-associat 99.8 1.9E-19 6.4E-24 173.0 8.8 147 5-217 6-155 (336)
4 4fcg_A Uncharacterized protein 99.0 1.7E-10 5.8E-15 110.1 6.6 190 120-339 81-285 (328)
5 2p1m_B Transport inhibitor res 99.0 1.7E-10 5.7E-15 119.1 4.5 126 152-281 102-244 (594)
6 3ogk_B Coronatine-insensitive 99.0 2.2E-10 7.4E-15 118.3 4.5 278 95-404 75-412 (592)
7 2z80_A TOLL-like receptor 2, v 98.8 4.1E-08 1.4E-12 94.4 12.2 222 151-394 96-330 (353)
8 2ca6_A RAN GTPase-activating p 98.8 1.2E-09 4.2E-14 106.5 1.1 239 152-404 57-339 (386)
9 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 6E-09 2.1E-13 70.3 3.8 40 4-43 5-44 (53)
10 4fcg_A Uncharacterized protein 98.7 7.4E-09 2.5E-13 98.6 5.8 222 84-339 72-309 (328)
11 2ast_B S-phase kinase-associat 98.7 1.5E-09 5.2E-14 103.6 0.5 199 155-377 70-282 (336)
12 1z7x_W Ribonuclease inhibitor; 98.7 4.7E-09 1.6E-13 104.7 2.1 268 118-406 26-324 (461)
13 2z66_A Variable lymphocyte rec 98.7 1.4E-08 4.7E-13 95.6 5.1 213 152-391 49-274 (306)
14 2z80_A TOLL-like receptor 2, v 98.6 9.5E-08 3.3E-12 91.8 10.2 171 154-341 51-232 (353)
15 4fmz_A Internalin; leucine ric 98.6 8.3E-08 2.8E-12 91.9 9.3 210 153-407 86-299 (347)
16 4fmz_A Internalin; leucine ric 98.6 7.5E-08 2.6E-12 92.2 8.8 213 151-406 106-322 (347)
17 3o53_A Protein LRIM1, AGAP0063 98.6 7.6E-09 2.6E-13 98.1 0.6 243 109-403 21-270 (317)
18 2z63_A TOLL-like receptor 4, v 98.5 8.3E-08 2.8E-12 98.3 7.4 102 224-338 395-501 (570)
19 1z7x_W Ribonuclease inhibitor; 98.5 2E-08 6.8E-13 100.1 1.8 238 155-406 3-267 (461)
20 3vq2_A TLR4, TOLL-like recepto 98.5 5.5E-08 1.9E-12 100.5 5.0 97 152-255 304-409 (606)
21 1ozn_A Reticulon 4 receptor; N 98.5 3.7E-08 1.3E-12 91.7 3.3 210 154-392 31-252 (285)
22 1ogq_A PGIP-2, polygalacturona 98.5 4.1E-08 1.4E-12 92.8 3.5 217 152-406 73-302 (313)
23 2z81_A CD282 antigen, TOLL-lik 98.5 2.4E-07 8.1E-12 94.5 9.5 225 155-405 26-261 (549)
24 3v47_A TOLL-like receptor 5B a 98.5 4.8E-08 1.6E-12 97.2 3.8 39 153-192 101-140 (455)
25 2id5_A Lingo-1, leucine rich r 98.5 5E-08 1.7E-12 97.8 3.9 171 153-340 78-257 (477)
26 3zyj_A Leucine-rich repeat-con 98.5 1.3E-07 4.5E-12 93.7 6.7 211 152-393 85-307 (440)
27 1o6v_A Internalin A; bacterial 98.5 3.5E-07 1.2E-11 91.4 9.4 209 152-406 87-298 (466)
28 1h6u_A Internalin H; cell adhe 98.5 2.9E-07 1E-11 86.7 8.3 165 151-341 59-227 (308)
29 1ozn_A Reticulon 4 receptor; N 98.5 8.2E-08 2.8E-12 89.3 4.2 173 152-341 53-235 (285)
30 3zyi_A Leucine-rich repeat-con 98.5 7.4E-08 2.5E-12 95.9 4.0 210 152-392 96-317 (452)
31 3t6q_A CD180 antigen; protein- 98.4 1.1E-07 3.6E-12 98.4 4.9 174 152-338 298-483 (606)
32 3vq2_A TLR4, TOLL-like recepto 98.4 4.7E-08 1.6E-12 101.0 1.1 121 153-281 326-457 (606)
33 3oja_A Leucine-rich immune mol 98.4 6.6E-08 2.3E-12 97.2 2.1 230 121-402 35-269 (487)
34 2id5_A Lingo-1, leucine rich r 98.4 2.1E-07 7.1E-12 93.3 5.6 222 152-406 53-283 (477)
35 3goz_A Leucine-rich repeat-con 98.4 3.6E-08 1.2E-12 95.2 0.0 182 153-340 48-262 (362)
36 2z7x_B TOLL-like receptor 1, v 98.4 1.5E-06 5.2E-11 87.9 12.1 262 93-395 220-498 (520)
37 1o6v_A Internalin A; bacterial 98.4 3.8E-07 1.3E-11 91.1 7.4 208 152-406 131-342 (466)
38 2z63_A TOLL-like receptor 4, v 98.4 2.8E-07 9.5E-12 94.3 6.5 214 156-406 305-529 (570)
39 1h6u_A Internalin H; cell adhe 98.4 2.8E-07 9.6E-12 86.8 5.9 161 153-339 39-203 (308)
40 3oja_A Leucine-rich immune mol 98.4 2.1E-07 7.1E-12 93.6 5.2 166 153-339 32-199 (487)
41 1wwl_A Monocyte differentiatio 98.4 4.4E-08 1.5E-12 92.5 0.2 40 242-281 198-237 (312)
42 3rgz_A Protein brassinosteroid 98.4 8E-08 2.7E-12 102.2 2.1 60 154-215 293-354 (768)
43 3rgz_A Protein brassinosteroid 98.4 1.1E-07 3.9E-12 101.1 3.0 64 151-215 96-162 (768)
44 3t6q_A CD180 antigen; protein- 98.4 1E-07 3.4E-12 98.6 2.4 229 152-396 322-578 (606)
45 4ezg_A Putative uncharacterize 98.4 6.5E-07 2.2E-11 78.3 7.3 148 153-339 42-189 (197)
46 2ca6_A RAN GTPase-activating p 98.4 6.4E-08 2.2E-12 94.2 0.6 183 152-340 91-312 (386)
47 1p9a_G Platelet glycoprotein I 98.3 4.1E-07 1.4E-11 84.9 6.0 195 155-397 31-227 (290)
48 3o6n_A APL1; leucine-rich repe 98.3 2.7E-07 9.1E-12 89.9 4.8 101 152-255 66-175 (390)
49 3v47_A TOLL-like receptor 5B a 98.3 3.2E-07 1.1E-11 91.2 5.1 41 151-192 125-165 (455)
50 2z66_A Variable lymphocyte rec 98.3 2.3E-07 8E-12 87.1 3.8 219 154-406 27-259 (306)
51 2z7x_B TOLL-like receptor 1, v 98.3 1.1E-06 3.8E-11 88.9 8.8 220 152-406 217-479 (520)
52 4ecn_A Leucine-rich repeat pro 98.3 8.3E-08 2.8E-12 102.6 -0.6 13 365-377 804-816 (876)
53 3rfs_A Internalin B, repeat mo 98.3 2.8E-07 9.5E-12 85.2 3.0 36 153-192 61-96 (272)
54 4glp_A Monocyte differentiatio 98.3 2E-06 6.7E-11 81.0 8.4 208 95-339 66-280 (310)
55 3oja_B Anopheles plasmodium-re 98.3 1.5E-07 5E-12 97.2 0.6 83 241-339 250-332 (597)
56 1xku_A Decorin; proteoglycan, 98.2 2.4E-07 8.1E-12 88.1 1.9 165 153-339 74-248 (330)
57 3o6n_A APL1; leucine-rich repe 98.2 7.8E-07 2.7E-11 86.6 5.4 168 152-339 138-326 (390)
58 3goz_A Leucine-rich repeat-con 98.2 3.5E-07 1.2E-11 88.2 2.7 178 156-339 23-233 (362)
59 2xwt_C Thyrotropin receptor; s 98.2 1.7E-06 5.8E-11 78.1 7.0 169 155-339 31-213 (239)
60 2z81_A CD282 antigen, TOLL-lik 98.2 6.8E-06 2.3E-10 83.6 12.3 180 152-341 71-261 (549)
61 1xku_A Decorin; proteoglycan, 98.2 8.5E-07 2.9E-11 84.2 5.2 121 155-281 121-249 (330)
62 1wwl_A Monocyte differentiatio 98.2 8.2E-07 2.8E-11 83.7 4.8 194 119-339 94-304 (312)
63 3rfs_A Internalin B, repeat mo 98.2 5.6E-07 1.9E-11 83.1 3.4 169 153-341 39-215 (272)
64 4eco_A Uncharacterized protein 98.2 1.4E-06 4.8E-11 90.6 6.8 193 120-340 249-466 (636)
65 1ogq_A PGIP-2, polygalacturona 98.2 1.2E-06 3.9E-11 82.8 5.5 191 120-340 76-277 (313)
66 2o6q_A Variable lymphocyte rec 98.2 5E-07 1.7E-11 83.3 2.7 194 155-393 37-234 (270)
67 3zyi_A Leucine-rich repeat-con 98.2 1.4E-06 4.8E-11 86.6 6.0 38 153-192 121-158 (452)
68 3oja_B Anopheles plasmodium-re 98.2 9.2E-07 3.2E-11 91.2 4.8 102 152-256 72-182 (597)
69 3g06_A SSPH2 (leucine-rich rep 98.2 2.7E-06 9.2E-11 87.8 7.5 209 153-406 79-295 (622)
70 2ra8_A Uncharacterized protein 98.2 8.1E-07 2.8E-11 85.4 3.4 78 151-232 135-226 (362)
71 3g06_A SSPH2 (leucine-rich rep 98.1 4.9E-06 1.7E-10 85.8 9.4 179 153-380 99-297 (622)
72 2ft3_A Biglycan; proteoglycan, 98.1 2.8E-07 9.7E-12 87.7 -0.2 79 152-235 75-157 (332)
73 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 2E-05 7E-10 80.5 13.5 257 94-392 250-524 (562)
74 1ziw_A TOLL-like receptor 3; i 98.1 1.9E-06 6.7E-11 90.1 5.6 221 155-405 381-619 (680)
75 4ecn_A Leucine-rich repeat pro 98.1 3E-06 1E-10 90.6 6.8 196 120-340 491-706 (876)
76 3bz5_A Internalin-J, INLJ; leu 98.1 3.1E-06 1.1E-10 84.3 6.5 220 118-404 40-263 (457)
77 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 1.6E-05 5.5E-10 81.2 12.0 220 153-406 247-508 (562)
78 1h6t_A Internalin B; cell adhe 98.1 2.6E-06 8.9E-11 79.4 5.5 147 151-341 64-210 (291)
79 4eco_A Uncharacterized protein 98.1 4.9E-07 1.7E-11 94.0 0.3 74 206-283 379-468 (636)
80 2z62_A TOLL-like receptor 4, v 98.1 3.9E-06 1.3E-10 77.4 6.4 212 155-395 28-254 (276)
81 3j0a_A TOLL-like receptor 5; m 98.1 1.2E-05 4.2E-10 86.3 10.6 102 225-340 266-371 (844)
82 3zyj_A Leucine-rich repeat-con 98.0 2.8E-06 9.4E-11 84.2 4.9 37 153-191 110-146 (440)
83 2o6q_A Variable lymphocyte rec 98.0 2.6E-06 8.8E-11 78.4 4.1 82 151-235 57-143 (270)
84 1m9s_A Internalin B; cell inva 98.0 1.9E-06 6.4E-11 88.7 3.2 121 151-282 61-185 (605)
85 1ziw_A TOLL-like receptor 3; i 98.0 2.3E-06 7.7E-11 89.7 3.7 35 365-405 558-594 (680)
86 3bz5_A Internalin-J, INLJ; leu 98.0 6.2E-06 2.1E-10 82.0 6.4 176 120-340 64-242 (457)
87 1p9a_G Platelet glycoprotein I 98.0 3.7E-06 1.3E-10 78.3 4.4 163 152-331 52-224 (290)
88 3j0a_A TOLL-like receptor 5; m 97.9 0.00013 4.3E-09 78.4 15.6 118 204-341 266-391 (844)
89 2xwt_C Thyrotropin receptor; s 97.9 1.1E-05 3.8E-10 72.6 6.2 186 121-338 32-233 (239)
90 2e31_A FBS1, F-box only protei 97.9 5.2E-06 1.8E-10 76.4 3.9 37 6-42 49-86 (297)
91 3m19_A Variable lymphocyte rec 97.9 5.2E-06 1.8E-10 75.5 3.8 147 155-315 35-190 (251)
92 3m19_A Variable lymphocyte rec 97.9 1.8E-05 6.2E-10 71.9 7.4 167 204-398 35-213 (251)
93 1h6t_A Internalin B; cell adhe 97.9 8.7E-06 3E-10 75.8 5.3 125 151-314 86-210 (291)
94 2ft3_A Biglycan; proteoglycan, 97.9 1.3E-06 4.6E-11 82.9 -0.7 167 152-339 99-272 (332)
95 2ell_A Acidic leucine-rich nuc 97.9 3.7E-06 1.3E-10 71.3 2.2 124 155-281 24-156 (168)
96 1m9s_A Internalin B; cell inva 97.9 5.8E-06 2E-10 85.1 3.7 164 152-341 40-207 (605)
97 4glp_A Monocyte differentiatio 97.9 2.4E-05 8.2E-10 73.5 7.6 223 154-405 63-304 (310)
98 2ell_A Acidic leucine-rich nuc 97.9 1.8E-05 6.2E-10 67.0 6.1 133 180-341 23-157 (168)
99 1xeu_A Internalin C; cellular 97.9 1.8E-05 6.1E-10 72.5 6.3 76 225-315 106-183 (263)
100 2z62_A TOLL-like receptor 4, v 97.8 3.9E-06 1.3E-10 77.4 1.6 175 152-341 49-234 (276)
101 3o53_A Protein LRIM1, AGAP0063 97.8 1.6E-05 5.4E-10 75.0 5.7 217 153-407 32-249 (317)
102 4ezg_A Putative uncharacterize 97.8 3.2E-05 1.1E-09 67.4 6.9 84 241-339 84-167 (197)
103 2je0_A Acidic leucine-rich nuc 97.8 2.2E-06 7.5E-11 71.2 -1.0 61 153-215 15-75 (149)
104 2ra8_A Uncharacterized protein 97.8 2E-05 6.9E-10 75.6 5.5 122 244-378 192-318 (362)
105 3l2o_B F-box only protein 4; s 97.8 7.3E-06 2.5E-10 74.6 2.0 35 7-41 4-38 (312)
106 3e4g_A ATP synthase subunit S, 97.7 3E-06 1E-10 72.0 -1.2 73 142-219 51-129 (176)
107 1a9n_A U2A', U2A'; complex (nu 97.7 3.1E-05 1E-09 66.2 4.7 88 242-341 61-150 (176)
108 2je0_A Acidic leucine-rich nuc 97.7 1.4E-05 4.7E-10 66.2 2.4 130 180-338 16-147 (149)
109 3un9_A NLR family member X1; l 97.6 4.1E-06 1.4E-10 81.0 -1.5 170 154-340 71-248 (372)
110 1xeu_A Internalin C; cellular 97.6 5.7E-06 2E-10 75.9 -1.7 139 180-341 40-182 (263)
111 2v9t_B SLIT homolog 2 protein 97.5 0.00019 6.4E-09 63.7 7.4 147 155-331 32-181 (220)
112 3v7d_B Cell division control p 97.5 3.1E-05 1.1E-09 76.5 2.0 39 4-42 11-49 (464)
113 1a9n_A U2A', U2A'; complex (nu 97.5 3.7E-05 1.3E-09 65.6 2.0 134 153-314 17-150 (176)
114 1jl5_A Outer protein YOPM; leu 97.4 6.8E-05 2.3E-09 74.4 3.9 12 367-378 317-328 (454)
115 3cvr_A Invasion plasmid antige 97.4 7.1E-05 2.4E-09 76.2 3.9 132 120-282 59-190 (571)
116 2v70_A SLIT-2, SLIT homolog 2 97.4 3.1E-05 1.1E-09 68.9 1.1 145 155-328 32-179 (220)
117 3cvr_A Invasion plasmid antige 97.4 7.6E-05 2.6E-09 76.0 4.1 181 155-378 59-241 (571)
118 1jl5_A Outer protein YOPM; leu 97.4 0.00017 5.7E-09 71.6 6.1 50 204-255 195-247 (454)
119 3e6j_A Variable lymphocyte rec 97.4 0.00015 5.2E-09 64.7 5.3 146 225-397 40-192 (229)
120 4g8a_A TOLL-like receptor 4; l 97.4 0.00015 5.2E-09 74.6 5.9 143 225-395 445-597 (635)
121 2o6s_A Variable lymphocyte rec 97.4 3.2E-05 1.1E-09 67.9 0.6 147 154-340 27-174 (208)
122 3e6j_A Variable lymphocyte rec 97.2 7.5E-05 2.6E-09 66.8 1.5 145 154-329 39-187 (229)
123 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.00016 5.4E-09 71.1 4.1 38 4-41 15-52 (445)
124 2o6s_A Variable lymphocyte rec 97.2 0.00025 8.5E-09 62.1 4.8 103 225-341 52-158 (208)
125 4ay9_X Follicle-stimulating ho 97.2 0.00013 4.4E-09 69.7 2.6 80 155-236 30-115 (350)
126 3e4g_A ATP synthase subunit S, 97.2 0.00099 3.4E-08 56.4 7.4 105 273-397 62-169 (176)
127 1p22_A F-BOX/WD-repeat protein 97.1 0.0001 3.5E-09 72.4 1.5 37 4-40 7-47 (435)
128 3sb4_A Hypothetical leucine ri 97.1 0.0018 6E-08 61.1 10.0 58 269-338 223-281 (329)
129 4g8a_A TOLL-like receptor 4; l 97.1 0.00024 8.3E-09 73.1 3.3 146 154-314 396-552 (635)
130 2v9t_B SLIT homolog 2 protein 97.0 0.00062 2.1E-08 60.3 4.8 126 240-392 51-179 (220)
131 2v70_A SLIT-2, SLIT homolog 2 96.9 0.00082 2.8E-08 59.5 5.4 25 367-391 153-179 (220)
132 1ds9_A Outer arm dynein; leuci 96.9 7.3E-05 2.5E-09 65.1 -2.2 15 241-255 136-150 (198)
133 2xot_A Amphoterin-induced prot 96.8 0.00081 2.8E-08 64.4 4.3 149 180-340 38-198 (361)
134 1ds9_A Outer arm dynein; leuci 96.8 4.1E-05 1.4E-09 66.8 -4.7 38 300-337 136-180 (198)
135 4ay9_X Follicle-stimulating ho 96.7 0.0023 7.9E-08 60.9 7.1 63 152-215 51-115 (350)
136 1io0_A Tropomodulin; LRR prote 96.7 0.0014 4.7E-08 56.4 4.4 70 266-339 87-159 (185)
137 3sb4_A Hypothetical leucine ri 96.6 0.0019 6.6E-08 60.8 5.4 80 243-338 224-304 (329)
138 1dce_A Protein (RAB geranylger 96.6 0.00059 2E-08 69.6 1.8 121 181-311 441-567 (567)
139 1w8a_A SLIT protein; signaling 96.6 0.0029 9.9E-08 54.5 5.8 80 225-315 54-137 (192)
140 3un9_A NLR family member X1; l 96.5 0.0006 2.1E-08 65.6 1.4 162 204-378 72-250 (372)
141 2xot_A Amphoterin-induced prot 96.4 0.00064 2.2E-08 65.1 0.7 125 155-282 39-173 (361)
142 2wfh_A SLIT homolog 2 protein 96.3 0.0039 1.3E-07 53.8 5.2 78 241-329 74-153 (193)
143 1io0_A Tropomodulin; LRR prote 96.2 0.0029 1E-07 54.2 3.8 127 264-406 28-162 (185)
144 1dce_A Protein (RAB geranylger 96.2 0.0025 8.6E-08 64.9 3.7 14 173-187 402-415 (567)
145 1w8a_A SLIT protein; signaling 96.0 0.0021 7.2E-08 55.4 2.0 60 155-215 29-89 (192)
146 2o6r_A Variable lymphocyte rec 96.0 0.0075 2.6E-07 51.0 5.5 64 241-315 72-135 (177)
147 4b8c_D Glucose-repressible alc 96.0 0.0037 1.3E-07 65.7 3.9 110 174-315 218-327 (727)
148 2o6r_A Variable lymphocyte rec 95.6 0.011 3.9E-07 49.8 4.7 105 268-395 48-154 (177)
149 2wfh_A SLIT homolog 2 protein 95.5 0.01 3.6E-07 51.1 4.2 102 268-392 50-153 (193)
150 3g39_A Variable lymphocyte rec 95.2 0.026 9E-07 47.4 5.7 99 225-334 30-135 (170)
151 4fdw_A Leucine rich hypothetic 95.1 0.04 1.4E-06 53.3 7.3 38 299-338 266-307 (401)
152 4fdw_A Leucine rich hypothetic 94.9 0.036 1.2E-06 53.7 6.6 127 224-377 225-355 (401)
153 4b8c_D Glucose-repressible alc 94.7 0.0039 1.3E-07 65.6 -1.0 101 224-341 223-326 (727)
154 2r9u_A Variable lymphocyte rec 94.6 0.05 1.7E-06 45.8 5.8 95 225-331 33-135 (174)
155 4fs7_A Uncharacterized protein 92.6 0.17 5.9E-06 48.6 6.5 138 225-400 253-393 (394)
156 3g39_A Variable lymphocyte rec 91.7 0.11 3.9E-06 43.3 3.5 55 225-282 54-112 (170)
157 2r9u_A Variable lymphocyte rec 89.8 0.18 6.2E-06 42.3 3.0 39 241-282 77-115 (174)
158 3rw6_A Nuclear RNA export fact 89.6 0.17 5.9E-06 45.8 2.8 86 243-337 168-257 (267)
159 2ifg_A High affinity nerve gro 88.4 0.67 2.3E-05 43.3 6.2 76 240-328 51-129 (347)
160 4fs7_A Uncharacterized protein 82.8 0.57 2E-05 44.8 2.6 99 224-339 275-374 (394)
161 4gt6_A Cell surface protein; l 81.0 1.3 4.5E-05 42.3 4.5 81 240-339 306-386 (394)
162 1pgv_A TMD-1, tropomodulin TMD 79.1 0.96 3.3E-05 38.7 2.4 129 264-405 33-167 (197)
163 2ifg_A High affinity nerve gro 79.1 0.5 1.7E-05 44.2 0.7 86 241-341 27-113 (347)
164 3rw6_A Nuclear RNA export fact 76.4 1.9 6.6E-05 38.8 3.8 13 269-281 167-179 (267)
165 4gt6_A Cell surface protein; l 75.0 2.8 9.6E-05 39.9 4.8 98 224-339 264-365 (394)
166 4h09_A Hypothetical leucine ri 61.1 4.3 0.00015 38.2 2.8 77 224-312 262-341 (379)
167 1pgv_A TMD-1, tropomodulin TMD 59.0 4.2 0.00014 34.6 2.1 93 243-339 39-134 (197)
168 4h09_A Hypothetical leucine ri 56.5 8.6 0.00029 36.1 4.1 98 224-338 239-340 (379)
169 2kwv_A RAD30 homolog B, DNA po 46.9 14 0.00047 22.9 2.3 15 8-22 21-35 (48)
170 1rbl_M Ribulose 1,5 bisphospha 31.1 1.5E+02 0.0052 22.2 6.4 55 33-98 32-89 (109)
171 1svd_M Ribulose bisphosphate c 25.3 1.7E+02 0.0059 22.0 5.9 55 33-98 34-91 (110)
172 3zxw_B Ribulose bisphosphate c 22.1 2.6E+02 0.009 21.2 6.6 78 11-99 4-89 (118)
173 1bwv_S Rubisco, protein (ribul 20.8 2.9E+02 0.01 21.6 6.6 57 33-100 26-85 (138)
174 4f0h_B Ribulose bisphosphate c 20.5 3.1E+02 0.01 21.5 6.6 55 33-98 26-83 (138)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=1.9e-21 Score=201.45 Aligned_cols=212 Identities=17% Similarity=0.240 Sum_probs=129.1
Q ss_pred cCCcCCCCChHHHHHHHhCCC-hhHHHHHhhccchhhhhcccccceEEecCCCCCCCCCCccccCCCCCchhhHhHHHHH
Q 013265 4 EGDHINELPDDILVNILSRLT-MKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNW 82 (446)
Q Consensus 4 ~~D~is~LPd~iL~~ILs~Lp-~kd~~rts~lSkrWr~lw~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (446)
..|+++.||||||.+||++|| .+|+++++.|||||+++.......+++....... ..
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~-----------------~~----- 59 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS-----------------PA----- 59 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC-----------------HH-----
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC-----------------HH-----
Confidence 359999999999999999999 9999999999999998732123355554321110 11
Q ss_pred HHHHHHhccCCCcceEEEEEecCC----------cchHHHHHHHHHH--cCCcEEEEeeeccccccccccccccccccCC
Q 013265 83 VNQVLSSLEGHCTEELRICFDVFS----------NHDIDNWIKFALE--RRVRRLELDFSRVVYNLRFVGQYTFPSHLDF 150 (446)
Q Consensus 83 v~~~L~~~~~~~l~~l~l~~~~~~----------~~~~~~wi~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~ 150 (446)
..+.+. +.++++.+...... ...+..|+..... +++++|.+....... ..+..+
T Consensus 60 --~~~~~~--~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--------~~~~~l-- 125 (594)
T 2p1m_B 60 --TVIRRF--PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD--------DCLELI-- 125 (594)
T ss_dssp --HHHHHC--TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH--------HHHHHH--
T ss_pred --HHHhhC--CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH--------HHHHHH--
Confidence 122222 34888888763211 0245678887654 389999886432110 001011
Q ss_pred ccccccccceEEEEE-EeChHHHHHHHhcCCCCcceeeEeccCCC----Cce-eEeCCcCccceEEeeccC-CC-----C
Q 013265 151 YSSFRHLTDLSLTTV-GITGEVLEHLLCYCCPVLEVLNVAESSSL----TSL-KVSGPSLKLKHLKLNKLD-NL-----K 218 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~-~~~~~~l~~ll~~~cp~Le~L~L~~c~~~----~~~-~i~~~~~~L~~L~i~~~~-~l-----~ 218 (446)
..++++|++|+|.++ .+++..+..+..+ ||+|++|++.+|... ..+ .+...+++|++|.+.+|. .+ .
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAAT-CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHH-CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHh-CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 125789999999998 5787788888899 999999999988611 111 233355789999998875 11 1
Q ss_pred eEEEECCceeEEEEcccc----cccccCCCCCcceEEe
Q 013265 219 DLQLHAPNLLSFEYSGPI----LPFSFRNVPNLVDASF 252 (446)
Q Consensus 219 ~~~i~~p~L~~l~~~~~~----~~~~~~~~~~L~~l~l 252 (446)
.+...+|+|++|++.++. .+..+.++++|+++.+
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 222236888888887652 1122334555666554
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=9.7e-20 Score=188.59 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCC-cCCcCC----CCChHHHHHHHhCC-ChhHHHHHhhccchhhhhcc
Q 013265 1 MRS-EGDHIN----ELPDDILVNILSRL-TMKEAVRTSIISSRWRYLWR 43 (446)
Q Consensus 1 ~~~-~~D~is----~LPd~iL~~ILs~L-p~kd~~rts~lSkrWr~lw~ 43 (446)
|+. +.||++ .||||++.+||++| +++|++++++|||||++++.
T Consensus 1 m~~~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 1 MEDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp -----------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred CCChhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh
Confidence 443 357877 89999999999999 89999999999999999854
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=1.9e-19 Score=173.02 Aligned_cols=147 Identities=19% Similarity=0.192 Sum_probs=98.3
Q ss_pred CCcCCCCChHHHHHHHhCCChhHHHHHhhccchhhhhcc--cccceEEecCCCCCCCCCCccccCCCCCchhhHhHHHHH
Q 013265 5 GDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR--GFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNW 82 (446)
Q Consensus 5 ~D~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~--~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (446)
...+++||||++.+||++|+.+|+++++.|||||+++.. +....+++....+.
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------- 60 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------- 60 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC-------------------------
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC-------------------------
Confidence 456899999999999999999999999999999999853 02335555443221
Q ss_pred HHHHHHhccCCCcceEEEEEecCCcchHHHHHHHHHHcCCcEEEEeeeccccccccccccccccccCCccccccccceEE
Q 013265 83 VNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSL 162 (446)
Q Consensus 83 v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L 162 (446)
...+......+++.+.+..... ...+. ....+++|++|+|
T Consensus 61 ----------------------------~~~~~~~~~~~l~~L~l~~n~l---------~~~~~---~~~~~~~L~~L~L 100 (336)
T 2ast_B 61 ----------------------------PDVTGRLLSQGVIAFRCPRSFM---------DQPLA---EHFSPFRVQHMDL 100 (336)
T ss_dssp ----------------------------HHHHHHHHHTTCSEEECTTCEE---------CSCCC---SCCCCBCCCEEEC
T ss_pred ----------------------------HHHHHhhhhccceEEEcCCccc---------cccch---hhccCCCCCEEEc
Confidence 1112222334566665532210 01111 1336899999999
Q ss_pred EEEEeChHHHHHHHhcCCCCcceeeEeccCCCCc-eeEeCCcCccceEEeeccCCC
Q 013265 163 TTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTS-LKVSGPSLKLKHLKLNKLDNL 217 (446)
Q Consensus 163 ~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~-~~i~~~~~~L~~L~i~~~~~l 217 (446)
+++.+++..+..++.. ||+|++|++.+|..... ...-..+++|++|.+.+|..+
T Consensus 101 ~~~~l~~~~~~~~~~~-~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l 155 (336)
T 2ast_B 101 SNSVIEVSTLHGILSQ-CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155 (336)
T ss_dssp TTCEECHHHHHHHHTT-BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred cCCCcCHHHHHHHHhh-CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 9999988878888999 99999999999863321 111223577888888877433
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.05 E-value=1.7e-10 Score=110.09 Aligned_cols=190 Identities=22% Similarity=0.205 Sum_probs=114.8
Q ss_pred cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE
Q 013265 120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV 199 (446)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i 199 (446)
.++++|.+.... .-.+|..+ ..+++|++|+|.+..++ .+...+.. +++|++|++.++........
T Consensus 81 ~~l~~L~L~~n~---------l~~lp~~l---~~l~~L~~L~L~~n~l~--~lp~~~~~-l~~L~~L~Ls~n~l~~lp~~ 145 (328)
T 4fcg_A 81 PGRVALELRSVP---------LPQFPDQA---FRLSHLQHMTIDAAGLM--ELPDTMQQ-FAGLETLTLARNPLRALPAS 145 (328)
T ss_dssp TTCCEEEEESSC---------CSSCCSCG---GGGTTCSEEEEESSCCC--CCCSCGGG-GTTCSEEEEESCCCCCCCGG
T ss_pred cceeEEEccCCC---------chhcChhh---hhCCCCCEEECCCCCcc--chhHHHhc-cCCCCEEECCCCccccCcHH
Confidence 577777775432 12455443 35788888888887766 23333567 88888888888754422211
Q ss_pred eCCcCccceEEeeccCCCCeEE------------EECCceeEEEEcccc---cccccCCCCCcceEEecccchhhhhhhh
Q 013265 200 SGPSLKLKHLKLNKLDNLKDLQ------------LHAPNLLSFEYSGPI---LPFSFRNVPNLVDASFWGCFSAYIAKNL 264 (446)
Q Consensus 200 ~~~~~~L~~L~i~~~~~l~~~~------------i~~p~L~~l~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~l 264 (446)
...+++|++|.+.+|..+..+. -..++|++|++.++. .+..+.++++|+.+++..+.+.. +
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~----l 221 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA----L 221 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC----C
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc----C
Confidence 2244678888888875433221 136778888777663 23446677788888887654332 1
Q ss_pred hhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 265 CQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 265 ~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
...+..+++|+.|++.++.+. ...+..+..+++|++|+|..+.....+ ..-+..+++|+.|+|.
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~--------~~~p~~~~~l~~L~~L~L~~n~~~~~~---p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTAL--------RNYPPIFGGRAPLKRLILKDCSNLLTL---PLDIHRLTQLEKLDLR 285 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTC--------CBCCCCTTCCCCCCEEECTTCTTCCBC---CTTGGGCTTCCEEECT
T ss_pred chhhccCCCCCEEECcCCcch--------hhhHHHhcCCCCCCEEECCCCCchhhc---chhhhcCCCCCEEeCC
Confidence 133567778888888764221 233445666778888888776422221 1125677788888774
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.99 E-value=1.7e-10 Score=119.08 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=89.7
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCc--e-eEeCCcCccceEEeeccC--C-----CCeEE
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTS--L-KVSGPSLKLKHLKLNKLD--N-----LKDLQ 221 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~--~-~i~~~~~~L~~L~i~~~~--~-----l~~~~ 221 (446)
..+++|++|+|+++.+++..+..+... ||+|++|++.+|..+.. + .+...+++|++|.+.+|. . +..+.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~-~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKS-FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHH-CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHh-CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 468899999999999999888888778 99999999999975543 2 233356899999999886 0 12222
Q ss_pred EECCceeEEEEcccc--cc-----cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265 222 LHAPNLLSFEYSGPI--LP-----FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT 281 (446)
Q Consensus 222 i~~p~L~~l~~~~~~--~~-----~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~ 281 (446)
-.+++|++|++.++. .. ....++++|+.+++..+.. ...+..++..+++|+.|.+..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~---~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP---LEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC---HHHHHHHHHHCTTCSEEECSB
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc---HHHHHHHHhcCCcceEccccc
Confidence 256799999998774 11 1234579999999987621 111335666777777776544
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.97 E-value=2.2e-10 Score=118.26 Aligned_cols=278 Identities=14% Similarity=0.059 Sum_probs=160.9
Q ss_pred cceEEEEEecC----------CcchHHHHHHHHHH--cCCcEEEEeeeccccccccccccccccccCCcccccc-ccceE
Q 013265 95 TEELRICFDVF----------SNHDIDNWIKFALE--RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRH-LTDLS 161 (446)
Q Consensus 95 l~~l~l~~~~~----------~~~~~~~wi~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~-L~~L~ 161 (446)
++++.+..... .......|+..... +++++|++....... ..+..+ ...++. |++|+
T Consensus 75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~--------~~~~~l--~~~~~~~L~~L~ 144 (592)
T 3ogk_B 75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD--------LDLDRL--AKARADDLETLK 144 (592)
T ss_dssp CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH--------HHHHHH--HHHHGGGCCEEE
T ss_pred CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH--------HHHHHH--HHhccccCcEEE
Confidence 88888865211 11245667776653 488988886432110 000000 112455 99999
Q ss_pred EEEEE-eChHHHHHHHhcCCCCcceeeEeccCCCCc----e-eEeCCcCccceEEeeccCCCC--------eEEEECCce
Q 013265 162 LTTVG-ITGEVLEHLLCYCCPVLEVLNVAESSSLTS----L-KVSGPSLKLKHLKLNKLDNLK--------DLQLHAPNL 227 (446)
Q Consensus 162 L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~----~-~i~~~~~~L~~L~i~~~~~l~--------~~~i~~p~L 227 (446)
|.++. +++..+..+..+ ||+|++|+|.+|..... + .+...+++|++|.+.++. +. .+...+|+|
T Consensus 145 L~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTH-CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EESCEEEEHHHHHHHHHH-CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTC
T ss_pred CcCCCCcCHHHHHHHHhh-CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCC
Confidence 99877 677788888889 99999999998852111 1 122345789999997765 22 112256999
Q ss_pred eEEEEccccc---ccccCCCCCcceEEecccchh-----------------------hhhhhhhhhhccCCCceEEEEee
Q 013265 228 LSFEYSGPIL---PFSFRNVPNLVDASFWGCFSA-----------------------YIAKNLCQHSIFLVQLHTLKLDT 281 (446)
Q Consensus 228 ~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~-----------------------~~~~~l~~~l~~l~~l~~L~L~~ 281 (446)
++|++.++.. +..+.++++|+++.+...... .....+..++..+++|++|++.+
T Consensus 223 ~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp CEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETT
T ss_pred cEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCC
Confidence 9999988742 334567889999988532100 00112234556667777777776
Q ss_pred cccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE-ecc------ccccccccccc
Q 013265 282 CHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL-VSQ------YDYESYESVKT 354 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~-~~~------~~~~~~~~~~~ 354 (446)
+.+. ...+...+..+++|++|.+..+. ...++..+.++||+|++|++.. ... +.......+..
T Consensus 303 ~~l~-------~~~~~~~~~~~~~L~~L~L~~~~---~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 303 ALLE-------TEDHCTLIQKCPNLEVLETRNVI---GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp CCCC-------HHHHHHHHTTCTTCCEEEEEGGG---HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CcCC-------HHHHHHHHHhCcCCCEEeccCcc---CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 4321 11111224567788888887331 2235666777888888888862 000 11011111111
Q ss_pred ccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEEec
Q 013265 355 IKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDP 404 (446)
Q Consensus 355 ~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~~ 404 (446)
+.. .|.+|+++.+.+ ..... ..+..+..+.+.|+.+.+..
T Consensus 373 l~~-------~~~~L~~L~l~~-~~l~~--~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 373 LAQ-------GCQELEYMAVYV-SDITN--ESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHH-------HCTTCSEEEEEE-SCCCH--HHHHHHHHHCCSCCEEEEEE
T ss_pred HHh-------hCccCeEEEeec-CCccH--HHHHHHHhhCCCCcEEEEee
Confidence 111 237899999843 22222 34555667789999999974
No 7
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.77 E-value=4.1e-08 Score=94.40 Aligned_cols=222 Identities=16% Similarity=0.140 Sum_probs=142.6
Q ss_pred ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee--EeCCcCccceEEeeccCCCCeEEE----EC
Q 013265 151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK--VSGPSLKLKHLKLNKLDNLKDLQL----HA 224 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~~~~l~~~~i----~~ 224 (446)
..++++|++|+|++..+++- ....+.. +++|++|++.++....... ....+++|++|.+.++..+..+.. ..
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~-~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNL-SSSWFKP-LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSC-CHHHHTT-CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred cCCCCCCCEEECCCCcCCcC-CHhHhCC-CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence 34678999999998887642 2234678 9999999999875433222 233458999999999854555421 24
Q ss_pred CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265 225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
++|+.|++.++.. +..+.++++|+++++..+....... .+...+++++.|++.++.+... .... ....
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~~~----~~~~-l~~~ 245 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE---IFVDVTSSVECLELRDTDLDTF----HFSE-LSTG 245 (353)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH---HHHHHTTTEEEEEEESCBCTTC----CCC------
T ss_pred CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh---hhhhhcccccEEECCCCccccc----cccc-cccc
Confidence 7899999887643 4467788999999998765433222 4556789999999998544211 1001 1112
Q ss_pred CCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--e
Q 013265 301 PEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--F 377 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~ 377 (446)
.....++.+.+.... ....+..+...+..+++|+.|++... .+..+|... +..+.+|+++.+.+ +
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N---------~l~~i~~~~---~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN---------QLKSVPDGI---FDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS---------CCCCCCTTT---TTTCTTCCEEECCSSCB
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC---------CCCccCHHH---HhcCCCCCEEEeeCCCc
Confidence 345678888888774 22333456667889999999999532 222334321 12458899999987 4
Q ss_pred ecCcchHHHHHHHHhcC
Q 013265 378 VGHTADFELVMYLIFSA 394 (446)
Q Consensus 378 ~g~~~e~~~~~~ll~~a 394 (446)
.+....+..+...+.+.
T Consensus 314 ~~~~~~l~~l~~~~~~~ 330 (353)
T 2z80_A 314 DCSCPRIDYLSRWLNKN 330 (353)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred cCcCCCcHHHHHHHHhc
Confidence 55555565555444443
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.76 E-value=1.2e-09 Score=106.49 Aligned_cols=239 Identities=17% Similarity=0.125 Sum_probs=129.5
Q ss_pred cccccccceEEEEEEeC---h---H---HHHHHHhcCCCCcceeeEeccCCCCc----e-eEeCCcCccceEEeeccCCC
Q 013265 152 SSFRHLTDLSLTTVGIT---G---E---VLEHLLCYCCPVLEVLNVAESSSLTS----L-KVSGPSLKLKHLKLNKLDNL 217 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~---~---~---~l~~ll~~~cp~Le~L~L~~c~~~~~----~-~i~~~~~~L~~L~i~~~~~l 217 (446)
..+++|++|+|+++.+. + . .+...+.. +++|++|+|.++..... + ..-..+++|++|.+.+|. +
T Consensus 57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l 134 (386)
T 2ca6_A 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK-CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L 134 (386)
T ss_dssp TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT-CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred HhCCCccEEeCcccccCccccchhHHHHHHHHHHhh-CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-C
Confidence 35788888888876432 1 1 23344567 88888888888764331 1 111234788888888876 3
Q ss_pred CeEE---E-EC-------------CceeEEEEcccccc--------cccCCCCCcceEEecccchhh-hhhhhhh-hhcc
Q 013265 218 KDLQ---L-HA-------------PNLLSFEYSGPILP--------FSFRNVPNLVDASFWGCFSAY-IAKNLCQ-HSIF 270 (446)
Q Consensus 218 ~~~~---i-~~-------------p~L~~l~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~-~~~~l~~-~l~~ 270 (446)
.... + .+ ++|++|.+.++... -.+.++++|+.+++..+.+.. ....+.. .+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 2110 0 11 78888888776432 134467788888887664331 1111223 5667
Q ss_pred CCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC-CCCCHHHHHHHHhh--CCCceEEEEEEecccccc
Q 013265 271 LVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEA--APSLYKFSLKLVSQYDYE 347 (446)
Q Consensus 271 l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~--~p~L~~L~l~~~~~~~~~ 347 (446)
+++|+.|.|+++.+. ......++..+..+++|++|.|..+. .......+...++. +|+|+.|+|..+ ...
T Consensus 215 ~~~L~~L~Ls~n~l~----~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n---~i~ 287 (386)
T 2ca6_A 215 CQELKVLDLQDNTFT----HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN---EIE 287 (386)
T ss_dssp CTTCCEEECCSSCCH----HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS---CCB
T ss_pred CCCccEEECcCCCCC----cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC---cCC
Confidence 888888888875331 00112233445667888888887774 21122234455544 788888888432 222
Q ss_pred cccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEEec
Q 013265 348 SYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDP 404 (446)
Q Consensus 348 ~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~~ 404 (446)
..+ ...+|... +.++.+|+++.+.+..-+... .++..+.+..+.++...+.-
T Consensus 288 ~~g-~~~l~~~l---~~~l~~L~~L~l~~N~l~~~~-~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 288 LDA-VRTLKTVI---DEKMPDLLFLELNGNRFSEED-DVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHH-HHHHHHHH---HHHCTTCCEEECTTSBSCTTS-HHHHHHHHHHHHHTCCEECC
T ss_pred HHH-HHHHHHHH---HhcCCCceEEEccCCcCCcch-hHHHHHHHHhhhcCcchhhh
Confidence 111 11122211 012377888888764322222 22333333445555555443
No 9
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.74 E-value=6e-09 Score=70.34 Aligned_cols=40 Identities=33% Similarity=0.556 Sum_probs=33.8
Q ss_pred cCCcCCCCChHHHHHHHhCCChhHHHHHhhccchhhhhcc
Q 013265 4 EGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR 43 (446)
Q Consensus 4 ~~D~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~ 43 (446)
..+.++.||+|++.+||++||.+|.++++.|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4577999999999999999999999999999999997643
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.74 E-value=7.4e-09 Score=98.64 Aligned_cols=222 Identities=17% Similarity=0.197 Sum_probs=147.5
Q ss_pred HHHHHhccCCCcceEEEEEecCCcchHHHHHHHHHHcCCcEEEEeeeccccccccccccccccccCCccccccccceEEE
Q 013265 84 NQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLT 163 (446)
Q Consensus 84 ~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~ 163 (446)
...+.......++.+.+....-. .+...+.. -.+++.|.+..... ..+|.. ...+++|++|+|+
T Consensus 72 ~~~l~~~~~~~l~~L~L~~n~l~--~lp~~l~~--l~~L~~L~L~~n~l---------~~lp~~---~~~l~~L~~L~Ls 135 (328)
T 4fcg_A 72 ADLLEDATQPGRVALELRSVPLP--QFPDQAFR--LSHLQHMTIDAAGL---------MELPDT---MQQFAGLETLTLA 135 (328)
T ss_dssp HHHHHHHTSTTCCEEEEESSCCS--SCCSCGGG--GTTCSEEEEESSCC---------CCCCSC---GGGGTTCSEEEEE
T ss_pred HHHHhcccccceeEEEccCCCch--hcChhhhh--CCCCCEEECCCCCc---------cchhHH---HhccCCCCEEECC
Confidence 33343333344888888643211 11111111 34799888865431 145543 3578999999999
Q ss_pred EEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEe----------CCcCccceEEeeccCCCCeEE---EECCceeEE
Q 013265 164 TVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVS----------GPSLKLKHLKLNKLDNLKDLQ---LHAPNLLSF 230 (446)
Q Consensus 164 ~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~----------~~~~~L~~L~i~~~~~l~~~~---i~~p~L~~l 230 (446)
++.++ .+..-+.. +++|+.|++.+|...+.+... ..+++|++|.+.++. +..+. -..++|++|
T Consensus 136 ~n~l~--~lp~~l~~-l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 136 RNPLR--ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211 (328)
T ss_dssp SCCCC--CCCGGGGG-CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEE
T ss_pred CCccc--cCcHHHhc-CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEE
Confidence 98877 33334778 999999999998766544211 124899999999986 44332 135899999
Q ss_pred EEccccc---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCccc
Q 013265 231 EYSGPIL---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLK 307 (446)
Q Consensus 231 ~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 307 (446)
++.++.. +..+.++++|+.+++..+....... ..+..+++|+.|++.++.. ...++..+..+++|+
T Consensus 212 ~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p---~~~~~l~~L~~L~L~~n~~--------~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP---PIFGGRAPLKRLILKDCSN--------LLTLPLDIHRLTQLE 280 (328)
T ss_dssp EEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC---CCTTCCCCCCEEECTTCTT--------CCBCCTTGGGCTTCC
T ss_pred EccCCCCCcCchhhccCCCCCEEECcCCcchhhhH---HHhcCCCCCCEEECCCCCc--------hhhcchhhhcCCCCC
Confidence 9998743 3457789999999998763322222 4567889999999988532 123455667889999
Q ss_pred EEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 308 HLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 308 ~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
+|+|..+..... +..-+.+.|+|+.+.+.
T Consensus 281 ~L~L~~n~~~~~---iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 281 KLDLRGCVNLSR---LPSLIAQLPANCIILVP 309 (328)
T ss_dssp EEECTTCTTCCC---CCGGGGGSCTTCEEECC
T ss_pred EEeCCCCCchhh---ccHHHhhccCceEEeCC
Confidence 999999753333 23346889999999884
No 11
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.73 E-value=1.5e-09 Score=103.57 Aligned_cols=199 Identities=16% Similarity=0.159 Sum_probs=112.6
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCc-e-eEeCCcCccceEEeeccCCCCeEE----EECCcee
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTS-L-KVSGPSLKLKHLKLNKLDNLKDLQ----LHAPNLL 228 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~-~-~i~~~~~~L~~L~i~~~~~l~~~~----i~~p~L~ 228 (446)
++++.|++.+..+++.... +.. +++|++|++.+|..... + .+...+++|++|.+.+|. +.... -..++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~--~~~-~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE--HFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEECSCCCS--CCC-CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCS
T ss_pred ccceEEEcCCccccccchh--hcc-CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCC
Confidence 7888888888776653211 446 89999999988863211 1 233455788888888875 32111 1257788
Q ss_pred EEEEccc-ccc-----cccCCCCCcceEEeccc-chhhhhhhhhhhhccCC-CceEEEEeecccccccchhcccccccCC
Q 013265 229 SFEYSGP-ILP-----FSFRNVPNLVDASFWGC-FSAYIAKNLCQHSIFLV-QLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 229 ~l~~~~~-~~~-----~~~~~~~~L~~l~l~~~-~~~~~~~~l~~~l~~l~-~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
+|++.++ ... ..+.++++|+++++..+ .... ..+...+..++ +|+.|.+.++...+ ....++..+
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~-----~~~~l~~~~ 218 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNL-----QKSDLSTLV 218 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGS-----CHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccC-----CHHHHHHHH
Confidence 8887776 222 23456777888877665 3321 12235667777 78888877742111 111122233
Q ss_pred CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEee
Q 013265 301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGF 377 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~ 377 (446)
..+++|++|++..+....+ .....+..+|+|++|++..+. ......+..+. ++.+|+++.+.|.
T Consensus 219 ~~~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~~l~--------~~~~L~~L~l~~~ 282 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCY---DIIPETLLELG--------EIPTLKTLQVFGI 282 (336)
T ss_dssp HHCTTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCT---TCCGGGGGGGG--------GCTTCCEEECTTS
T ss_pred hhCCCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCC---CCCHHHHHHHh--------cCCCCCEEeccCc
Confidence 4567788887777642111 112234667788888774331 11111111122 2367888888776
No 12
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.67 E-value=4.7e-09 Score=104.69 Aligned_cols=268 Identities=15% Similarity=0.100 Sum_probs=143.4
Q ss_pred HHcCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCC----CcceeeEeccCC
Q 013265 118 LERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCP----VLEVLNVAESSS 193 (446)
Q Consensus 118 ~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp----~Le~L~L~~c~~ 193 (446)
.-+++++|.+....... .+...+|.. ...+++|++|+|+++.+++..+..+... ++ +|++|++.+|..
T Consensus 26 ~~~~L~~L~L~~~~l~~----~~~~~l~~~---l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~~L~~L~L~~n~i 97 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTE----ARCKDISSA---LRVNPALAELNLRSNELGDVGVHCVLQG-LQTPSCKIQKLSLQNCCL 97 (461)
T ss_dssp HHTTCSEEEEESSCCCH----HHHHHHHHH---HHTCTTCCEEECTTCCCHHHHHHHHHHT-TCSTTCCCCEEECTTSCC
T ss_pred hcCCccEEEccCCCCCH----HHHHHHHHH---HHhCCCcCEEeCCCCcCChHHHHHHHHH-HhhCCCceeEEEccCCCC
Confidence 34578888876543110 001122221 2346788888888888877777777766 66 688888888753
Q ss_pred CC----c-eeEeCCcCccceEEeeccCCCCeEEE---------ECCceeEEEEcccccc--------cccCCCCCcceEE
Q 013265 194 LT----S-LKVSGPSLKLKHLKLNKLDNLKDLQL---------HAPNLLSFEYSGPILP--------FSFRNVPNLVDAS 251 (446)
Q Consensus 194 ~~----~-~~i~~~~~~L~~L~i~~~~~l~~~~i---------~~p~L~~l~~~~~~~~--------~~~~~~~~L~~l~ 251 (446)
.. . ...-..+++|++|.++++. +....+ ..++|++|++.++... ..+..+++|++++
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 31 1 1122344788888888776 332111 1246888888776432 1233467888888
Q ss_pred ecccchhhh-hhhhhh-hhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCC-CHHHHHH-HH
Q 013265 252 FWGCFSAYI-AKNLCQ-HSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVN-DLIFCIA-LL 327 (446)
Q Consensus 252 l~~~~~~~~-~~~l~~-~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~l~~-ll 327 (446)
+..+..... ...+.. +....++++.|.+.++.+... ....++..+..+++|++|++..+.-.. ....+.. +.
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD----NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT----HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH----HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence 876543321 111112 222456788888877533211 001122334456788888887764111 1111222 22
Q ss_pred hhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecC-cchHHHHHHHHhcCccccceEEecCC
Q 013265 328 EAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGH-TADFELVMYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 328 ~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~-~~e~~~~~~ll~~a~~Le~l~i~~~~ 406 (446)
..+++|++|++.. +...+.+ ...++... ..+.+|+++.+.+..-. .....+...+..+.+.|+.+.+....
T Consensus 253 ~~~~~L~~L~L~~---n~l~~~~-~~~l~~~l----~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 253 HPSSRLRTLWIWE---CGITAKG-CGDLCRVL----RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp STTCCCCEEECTT---SCCCHHH-HHHHHHHH----HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred cCCCCceEEECcC---CCCCHHH-HHHHHHHH----hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 3578888888733 2222211 11112111 12377888888764322 22224555555556789999888765
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.66 E-value=1.4e-08 Score=95.65 Aligned_cols=213 Identities=17% Similarity=0.113 Sum_probs=124.3
Q ss_pred cccccccceEEEEEEeChHH-HHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeE-----EEECC
Q 013265 152 SSFRHLTDLSLTTVGITGEV-LEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDL-----QLHAP 225 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~-l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~-----~i~~p 225 (446)
..+++|++|+|.+..++... ....+.+ +++|++|++.++...........+++|++|.+.++. +..+ ....+
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR 126 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCT
T ss_pred hccccCCEEECCCCccCcccCccccccc-ccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhcc
Confidence 46788888888877665221 1112446 888888888887543322222244788888887764 2211 11347
Q ss_pred ceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265 226 NLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP 301 (446)
Q Consensus 226 ~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~ 301 (446)
+|++|++.++.. +..+.++++|+.+++..+..... .+...+..+++|+.|+++++.+. ...+..+.
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~ 196 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLE--------QLSPTAFN 196 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCC--------EECTTTTT
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--cchhHHhhCcCCCEEECCCCCcC--------CcCHHHhc
Confidence 888888877632 23456778888888876643220 11245667788888888874321 11234566
Q ss_pred CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCcccccc-CCCcEEEEEe--ee
Q 013265 302 EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTEL-RSIRVVELLG--FV 378 (446)
Q Consensus 302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l-~~L~~v~i~~--~~ 378 (446)
.+++|++|.+..+.-.... ...+..+++|+.|++... ..... .+.... .+ .+|+++.+.+ +.
T Consensus 197 ~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N---~l~~~-----~~~~~~----~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLD---TFPYKCLNSLQVLDYSLN---HIMTS-----KKQELQ----HFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TCTTCCEEECTTSCCSBCC---SGGGTTCTTCCEEECTTS---CCCBC-----SSSSCC----CCCTTCCEEECTTCCEE
T ss_pred CCCCCCEEECCCCccCccC---hhhccCcccCCEeECCCC---CCccc-----CHHHHH----hhhccCCEEEccCCCee
Confidence 7788888888777411110 012467888888888432 11110 111111 12 4799999977 56
Q ss_pred cCcchHHHHHHHH
Q 013265 379 GHTADFELVMYLI 391 (446)
Q Consensus 379 g~~~e~~~~~~ll 391 (446)
+......+.+++-
T Consensus 262 ~~c~~~~~~~~l~ 274 (306)
T 2z66_A 262 CTCEHQSFLQWIK 274 (306)
T ss_dssp CSGGGHHHHHHHH
T ss_pred cccChHHHHHHHH
Confidence 6666666777653
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.64 E-value=9.5e-08 Score=91.81 Aligned_cols=171 Identities=18% Similarity=0.098 Sum_probs=112.1
Q ss_pred cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCcee
Q 013265 154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLL 228 (446)
Q Consensus 154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~ 228 (446)
+++|++|+|++..+++-. ...+.. +++|+.|++.++...... ..-..+++|++|.++++. +..+.. ..++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~-~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYIS-NSDLQR-CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLT 127 (353)
T ss_dssp CTTCCEEECTTSCCCEEC-TTTTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCS
T ss_pred cccCcEEECCCCcCcccC-HHHhcc-CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCC
Confidence 358888888877665321 113567 899999999887432211 112234788889888876 444432 358899
Q ss_pred EEEEccccc---cc--ccCCCCCcceEEecccc-hhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265 229 SFEYSGPIL---PF--SFRNVPNLVDASFWGCF-SAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE 302 (446)
Q Consensus 229 ~l~~~~~~~---~~--~~~~~~~L~~l~l~~~~-~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
+|++.+... +. .+.++++|+.+++..+. ...... ..+..+++|+.|++.++.+. ...+..+..
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~l~--------~~~~~~l~~ 196 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR---KDFAGLTFLEELEIDASDLQ--------SYEPKSLKS 196 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---TTTTTCCEEEEEEEEETTCC--------EECTTTTTT
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH---HHccCCCCCCEEECCCCCcC--------ccCHHHHhc
Confidence 999887743 22 46788999999997652 222112 45677899999999884321 122456677
Q ss_pred CCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 303 MCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 303 ~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
+++|++|.+..+.- ... ...++..+++|+.|++...
T Consensus 197 l~~L~~L~l~~n~l-~~~--~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 197 IQNVSHLILHMKQH-ILL--LEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp CSEEEEEEEECSCS-TTH--HHHHHHHTTTEEEEEEESC
T ss_pred cccCCeecCCCCcc-ccc--hhhhhhhcccccEEECCCC
Confidence 89999999988852 222 2335667899999999654
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.62 E-value=8.3e-08 Score=91.88 Aligned_cols=210 Identities=16% Similarity=0.109 Sum_probs=101.0
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeEE
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLSF 230 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~l 230 (446)
.+++|++|+|.++.+++- . .+.. +++|++|++.+|....... ...+++|+.|.+.+|.....+. -..++|++|
T Consensus 86 ~l~~L~~L~L~~n~i~~~--~-~~~~-l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDI--S-ALQN-LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--G-GGTT-CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred cCCcCCEEEccCCcccCc--h-HHcC-CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence 445555555555444331 1 1344 5555555555443222111 1223455555555553222211 123555555
Q ss_pred EEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccE
Q 013265 231 EYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKH 308 (446)
Q Consensus 231 ~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 308 (446)
.+.++... ..+.++++|+++++..+..... ..+..+++++.|.+.++.+. ... .+..+++|++
T Consensus 161 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n~l~---------~~~-~~~~~~~L~~ 225 (347)
T 4fmz_A 161 TVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-----SPLASLTSLHYFTAYVNQIT---------DIT-PVANMTRLNS 225 (347)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC-----GGGGGCTTCCEEECCSSCCC---------CCG-GGGGCTTCCE
T ss_pred EecCCCcCCchhhccCCCCCEEEccCCccccc-----ccccCCCccceeecccCCCC---------CCc-hhhcCCcCCE
Confidence 55554221 1144555566665554422111 11445566666666553211 000 1445677777
Q ss_pred EEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHH
Q 013265 309 LEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVM 388 (446)
Q Consensus 309 L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~ 388 (446)
|.+..+.-... .. +..+|+|++|++... ...+ ++. +..+.+|+++.+.+..-..- .
T Consensus 226 L~l~~n~l~~~-~~----~~~l~~L~~L~l~~n---~l~~------~~~-----~~~l~~L~~L~l~~n~l~~~--~--- 281 (347)
T 4fmz_A 226 LKIGNNKITDL-SP----LANLSQLTWLEIGTN---QISD------INA-----VKDLTKLKMLNVGSNQISDI--S--- 281 (347)
T ss_dssp EECCSSCCCCC-GG----GTTCTTCCEEECCSS---CCCC------CGG-----GTTCTTCCEEECCSSCCCCC--G---
T ss_pred EEccCCccCCC-cc----hhcCCCCCEEECCCC---ccCC------Chh-----HhcCCCcCEEEccCCccCCC--h---
Confidence 77777642111 11 567778888877432 1111 111 11237899998887532221 1
Q ss_pred HHHhcCccccceEEecCCC
Q 013265 389 YLIFSAKLLEKIIIDPCPT 407 (446)
Q Consensus 389 ~ll~~a~~Le~l~i~~~~~ 407 (446)
.+.+.+.|+.+.+..+.-
T Consensus 282 -~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 282 -VLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp -GGGGCTTCSEEECCSSCC
T ss_pred -hhcCCCCCCEEECcCCcC
Confidence 246778999999887643
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.62 E-value=7.5e-08 Score=92.16 Aligned_cols=213 Identities=15% Similarity=0.155 Sum_probs=142.5
Q ss_pred ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCcee
Q 013265 151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLL 228 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~ 228 (446)
...+++|++|+|.++.+++..- +.. +++|+.|++.+|.....+.....+++|+.|.+.++. +..+. -..++|+
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~---~~~-l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP---LAN-LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG---GTT-CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCS
T ss_pred HcCCCcCCEEECcCCcccCchh---hcc-CCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchhhccCCCCC
Confidence 4578999999999988765321 678 999999999999766655444556889999999886 33221 2458999
Q ss_pred EEEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcc
Q 013265 229 SFEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNL 306 (446)
Q Consensus 229 ~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L 306 (446)
+|++.++... ..+..+++|+.+++..+..... ..+..+++++.|.+.++.+. ..+ .+..+++|
T Consensus 181 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~l~---------~~~-~~~~l~~L 245 (347)
T 4fmz_A 181 SLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-----TPVANMTRLNSLKIGNNKIT---------DLS-PLANLSQL 245 (347)
T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSCCC---------CCG-GGTTCTTC
T ss_pred EEEccCCcccccccccCCCccceeecccCCCCCC-----chhhcCCcCCEEEccCCccC---------CCc-chhcCCCC
Confidence 9999887432 1266788899999876633221 12678899999999885332 111 15678899
Q ss_pred cEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHH
Q 013265 307 KHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFEL 386 (446)
Q Consensus 307 ~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~ 386 (446)
++|++..+.-. ++ ..+..+|+|+.|++... ...+. .... .+.+|+++.+.+..-......
T Consensus 246 ~~L~l~~n~l~-~~----~~~~~l~~L~~L~l~~n---~l~~~---~~~~--------~l~~L~~L~L~~n~l~~~~~~- 305 (347)
T 4fmz_A 246 TWLEIGTNQIS-DI----NAVKDLTKLKMLNVGSN---QISDI---SVLN--------NLSQLNSLFLNNNQLGNEDME- 305 (347)
T ss_dssp CEEECCSSCCC-CC----GGGTTCTTCCEEECCSS---CCCCC---GGGG--------GCTTCSEEECCSSCCCGGGHH-
T ss_pred CEEECCCCccC-CC----hhHhcCCCcCEEEccCC---ccCCC---hhhc--------CCCCCCEEECcCCcCCCcChh-
Confidence 99999887421 11 23678899999998533 22111 1111 237788888887644322222
Q ss_pred HHHHHhcCccccceEEecCC
Q 013265 387 VMYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 387 ~~~ll~~a~~Le~l~i~~~~ 406 (446)
.+.+.+.|+.+.+..+.
T Consensus 306 ---~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 306 ---VIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ---HHHTCTTCSEEECCSSS
T ss_pred ---HhhccccCCEEEccCCc
Confidence 23567888888888765
No 17
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.58 E-value=7.6e-09 Score=98.06 Aligned_cols=243 Identities=10% Similarity=0.035 Sum_probs=151.4
Q ss_pred hHHHHHHHHHH--cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCccee
Q 013265 109 DIDNWIKFALE--RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVL 186 (446)
Q Consensus 109 ~~~~wi~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L 186 (446)
.+...+..... +++++|.+..... -.++.. ....+++|++|+|+++.+++.. . +.. +++|++|
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l---------~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~--~-~~~-l~~L~~L 85 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPL---------SQISAA--DLAPFTKLELLNLSSNVLYETL--D-LES-LSTLRTL 85 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCC---------CCCCHH--HHTTCTTCCEEECTTSCCEEEE--E-ETT-CTTCCEE
T ss_pred chhhhHHHHhccCCCCCEEECcCCcc---------CcCCHH--HhhCCCcCCEEECCCCcCCcch--h-hhh-cCCCCEE
Confidence 45555554433 3688887744321 112211 1346789999999887665321 1 677 9999999
Q ss_pred eEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEE-CCceeEEEEccccc----ccccCCCCCcceEEecccchhhhh
Q 013265 187 NVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLH-APNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIA 261 (446)
Q Consensus 187 ~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~-~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~ 261 (446)
++.++... . +. ..++|++|.+.++. +..+... .++|+.|++.++.. +..+.++++|+.++++.+......
T Consensus 86 ~Ls~n~l~-~--l~-~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 86 DLNNNYVQ-E--LL-VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp ECCSSEEE-E--EE-ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred ECcCCccc-c--cc-CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 99988522 1 22 22789999999887 6655443 58899999988743 335667889999999876433211
Q ss_pred hhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 262 KNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 262 ~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
. ..+...+++|+.|.++++.+. .++ ....+++|++|++..+.-.. +..-+..+++|+.|++...
T Consensus 161 ~--~~~~~~l~~L~~L~L~~N~l~---------~~~-~~~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 161 F--AELAASSDTLEHLNLQYNFIY---------DVK-GQVVFAKLKTLDLSSNKLAF----MGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp G--GGGGGGTTTCCEEECTTSCCC---------EEE-CCCCCTTCCEEECCSSCCCE----ECGGGGGGTTCSEEECTTS
T ss_pred H--HHHhhccCcCCEEECCCCcCc---------ccc-cccccccCCEEECCCCcCCc----chhhhcccCcccEEECcCC
Confidence 1 145567899999999885331 111 22347899999999885211 1112567899999999432
Q ss_pred cccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEEe
Q 013265 342 SQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIID 403 (446)
Q Consensus 342 ~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~ 403 (446)
. +..+|.... .+.+|+.+.+.+-.-... .....+.+.+.|+.+.+.
T Consensus 225 ---~------l~~l~~~~~----~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 225 ---K------LVLIEKALR----FSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp ---C------CCEECTTCC----CCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred ---c------ccchhhHhh----cCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence 2 222343222 347899998886543322 223345677778877776
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.55 E-value=8.3e-08 Score=98.29 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=44.5
Q ss_pred CCceeEEEEccccc----c-cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhccccccc
Q 013265 224 APNLLSFEYSGPIL----P-FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLH 298 (446)
Q Consensus 224 ~p~L~~l~~~~~~~----~-~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~ 298 (446)
.++|++|++.++.. + ..+.++++|+.+++..+....... ..+..+++|+.|.+.++.+ ....++.
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l-------~~~~~p~ 464 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSF-------QENFLPD 464 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT---TTTTTCTTCCEEECTTCEE-------GGGEECS
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch---hhhhcCCcCcEEECcCCcC-------ccccchh
Confidence 35555555544321 1 123445555555554432211111 3344555566666555321 1112234
Q ss_pred CCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEE
Q 013265 299 DIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSL 338 (446)
Q Consensus 299 ~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l 338 (446)
.+..+++|+.|++..+.-... ....+..+|+|+.|++
T Consensus 465 ~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 465 IFTELRNLTFLDLSQCQLEQL---SPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CCTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEEC
T ss_pred hhhcccCCCEEECCCCccccC---ChhhhhcccCCCEEeC
Confidence 445556666666655531110 0112345566666666
No 19
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.52 E-value=2e-08 Score=100.14 Aligned_cols=238 Identities=15% Similarity=0.137 Sum_probs=133.8
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCc----e-eEeCCcCccceEEeeccCCCCeEEE-----EC
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTS----L-KVSGPSLKLKHLKLNKLDNLKDLQL-----HA 224 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~----~-~i~~~~~~L~~L~i~~~~~l~~~~i-----~~ 224 (446)
++|++|+|++..+++..+..++.. +|+|++|++.+|..... + ..-..+++|++|+++++. +....+ ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~-~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPL-LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHH-HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhh-cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHH
Confidence 566777777777776666666677 77777777777653211 0 111123567777776654 222100 11
Q ss_pred C----ceeEEEEccccc--------ccccCCCCCcceEEecccchhhh-hhhhhh-hhccCCCceEEEEeecccccccch
Q 013265 225 P----NLLSFEYSGPIL--------PFSFRNVPNLVDASFWGCFSAYI-AKNLCQ-HSIFLVQLHTLKLDTCHLLIGDSE 290 (446)
Q Consensus 225 p----~L~~l~~~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~-~l~~l~~l~~L~L~~~~~~~~~~~ 290 (446)
+ +|++|++.++.. +-.+.++++|+++++..+..... ...+.. +....++|++|.+..+.+...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--- 157 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA--- 157 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG---
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH---
Confidence 2 577777776642 23467889999999987654322 122222 233466899999988643211
Q ss_pred hcccccccCCCCCCcccEEEEEecCCC-CCHHHHHHHHh-hCCCceEEEEEEecccccccccccccccCCCCccccccCC
Q 013265 291 YRAGRYLHDIPEMCNLKHLEIIGTPKV-NDLIFCIALLE-AAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRS 368 (446)
Q Consensus 291 ~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~l~~ll~-~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~ 368 (446)
....+...+..+++|++|++..+.-. .....+...+. ..++|+.|++.. +...+.+ ...++... ..+.+
T Consensus 158 -~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~---n~l~~~~-~~~l~~~l----~~~~~ 228 (461)
T 1z7x_W 158 -SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES---CGVTSDN-CRDLCGIV----ASKAS 228 (461)
T ss_dssp -GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT---SCCBTTH-HHHHHHHH----HHCTT
T ss_pred -HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC---CCCcHHH-HHHHHHHH----HhCCC
Confidence 11122333455789999999887511 11222333232 466999999843 2222211 01111111 12378
Q ss_pred CcEEEEEeeecC-cchHHHHHHHHhcCccccceEEecCC
Q 013265 369 IRVVELLGFVGH-TADFELVMYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 369 L~~v~i~~~~g~-~~e~~~~~~ll~~a~~Le~l~i~~~~ 406 (446)
|+++.+.+..-. ..-..+...+..+.+.|+.+.+..+.
T Consensus 229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 999999875422 22234455565678999999998764
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.51 E-value=5.5e-08 Score=100.51 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=51.1
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE------EECC
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ------LHAP 225 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~------i~~p 225 (446)
..+++|++|.+.++.++. +..+ . +|.|++|++.++.......+. .+++|+.|.++++. +..+. ...+
T Consensus 304 ~~~~~L~~L~l~~n~l~~--lp~~--~-l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQLKQ--FPTL--D-LPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNA-LSFSGCCSYSDLGTN 376 (606)
T ss_dssp CTTCCCSEEEEESCCCSS--CCCC--C-CSSCCEEEEESCSSCEECCCC-CCTTCCEEECCSSC-EEEEEECCHHHHCCS
T ss_pred cccccCCEEEcccccCcc--cccC--C-CCccceeeccCCcCccchhhc-cCCCCCEEECcCCc-cCCCcchhhhhccCC
Confidence 355667777777766632 2222 5 777777777776544433222 33566666666654 33221 1235
Q ss_pred ceeEEEEccccc---ccccCCCCCcceEEeccc
Q 013265 226 NLLSFEYSGPIL---PFSFRNVPNLVDASFWGC 255 (446)
Q Consensus 226 ~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~ 255 (446)
+|++|++.++.. +..+.++++|+.+++..+
T Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409 (606)
T ss_dssp CCCEEECCSCSEEEECCCCTTCTTCCEEECTTS
T ss_pred cccEeECCCCccccchhhccCCCCCCeeECCCC
Confidence 566666555421 233445555666655443
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.51 E-value=3.7e-08 Score=91.69 Aligned_cols=210 Identities=14% Similarity=0.047 Sum_probs=117.0
Q ss_pred cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCcee
Q 013265 154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLL 228 (446)
Q Consensus 154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~ 228 (446)
.++|++|.|.+..+++-. ...+.. +++|++|++.++...... .....+++|++|.+.++..+..+.. ..++|+
T Consensus 31 ~~~l~~L~l~~n~i~~~~-~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVP-AASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCCEEC-TTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCcCCccC-HHHccc-CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 357777777766554321 112456 777777777766432110 1112336677777777653333311 246777
Q ss_pred EEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCC
Q 013265 229 SFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC 304 (446)
Q Consensus 229 ~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (446)
+|++.++.. +..+.++++|+.+++..+....... ..+..+++|+.|++.++.+. ......+..++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~ 177 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD---DTFRDLGNLTHLFLHGNRIS--------SVPERAFRGLH 177 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------EECTTTTTTCT
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH---hHhccCCCccEEECCCCccc--------ccCHHHhcCcc
Confidence 777776632 2345677888888887654332222 34567788888888874221 11122356678
Q ss_pred cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEeccccccccccccccc-CCCCccccccCCCcEEEEEe--eecCc
Q 013265 305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIK-DQPYLSFTELRSIRVVELLG--FVGHT 381 (446)
Q Consensus 305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p-~c~~~~~~~l~~L~~v~i~~--~~g~~ 381 (446)
+|++|.+..+.-... ....+..+++|+.|++... ... ..+ +. +..+.+|+++.+.+ +.+..
T Consensus 178 ~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n---~l~------~~~~~~----~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHV---HPHAFRDLGRLMTLYLFAN---NLS------ALPTEA----LAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TCCEEECCSSCCCEE---CTTTTTTCTTCCEEECCSS---CCS------CCCHHH----HTTCTTCCEEECCSSCEECSG
T ss_pred ccCEEECCCCccccc---CHhHccCcccccEeeCCCC---cCC------cCCHHH----cccCcccCEEeccCCCccCCC
Confidence 888888887741111 0123567888888888432 111 111 10 11236788888876 45565
Q ss_pred chHHHHHHHHh
Q 013265 382 ADFELVMYLIF 392 (446)
Q Consensus 382 ~e~~~~~~ll~ 392 (446)
....+.+++-.
T Consensus 242 ~~~~~~~~l~~ 252 (285)
T 1ozn_A 242 RARPLWAWLQK 252 (285)
T ss_dssp GGHHHHHHHHH
T ss_pred CcHHHHHHHHh
Confidence 65566666533
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.51 E-value=4.1e-08 Score=92.78 Aligned_cols=217 Identities=13% Similarity=0.077 Sum_probs=107.2
Q ss_pred cccccccceEEEE-EEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCe-E---EEECC
Q 013265 152 SSFRHLTDLSLTT-VGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKD-L---QLHAP 225 (446)
Q Consensus 152 ~~~~~L~~L~L~~-~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~-~---~i~~p 225 (446)
..+++|++|+|++ ..+.+. +...+.. +++|++|++.++...+.+ .....+++|++|.++++. +.. + .-..+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~-~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGP-IPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLP 149 (313)
T ss_dssp GGCTTCSEEEEEEETTEESC-CCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCT
T ss_pred hCCCCCCeeeCCCCCccccc-CChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCC
Confidence 3566677777764 323221 1112455 677777777666543211 111223566666666554 211 1 01246
Q ss_pred ceeEEEEccccc----ccccCCCC-CcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265 226 NLLSFEYSGPIL----PFSFRNVP-NLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 226 ~L~~l~~~~~~~----~~~~~~~~-~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
+|++|++.++.. +..+.+++ .|+.+++..+....... ..+..++ |+.|++..+.+. ...+..+
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~---~~~~~l~-L~~L~Ls~N~l~--------~~~~~~~ 217 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP---PTFANLN-LAFVDLSRNMLE--------GDASVLF 217 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC---GGGGGCC-CSEEECCSSEEE--------ECCGGGC
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC---hHHhCCc-ccEEECcCCccc--------CcCCHHH
Confidence 677776665532 33455555 67777776553321111 3334444 777777763221 1223445
Q ss_pred CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--ee
Q 013265 301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FV 378 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~ 378 (446)
..+++|+.|.+..+.-...... +..+++|++|++... ... + ..|..+ ..+.+|+++.+.+ +.
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls~N---~l~--~---~~p~~l----~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNN---RIY--G---TLPQGL----TQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCSS---CCE--E---CCCGGG----GGCTTCCEEECCSSEEE
T ss_pred hcCCCCCEEECCCCceeeecCc----ccccCCCCEEECcCC---ccc--C---cCChHH----hcCcCCCEEECcCCccc
Confidence 5677777777776642222111 455677777777432 111 0 122211 1346777777765 33
Q ss_pred cCcchHHHHHHHHhcCccccceEEecCC
Q 013265 379 GHTADFELVMYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 379 g~~~e~~~~~~ll~~a~~Le~l~i~~~~ 406 (446)
|...+. .+.+.|+.+.+....
T Consensus 282 ~~ip~~-------~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 282 GEIPQG-------GNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCCS-------TTGGGSCGGGTCSSS
T ss_pred ccCCCC-------ccccccChHHhcCCC
Confidence 332221 345666666665544
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.50 E-value=2.4e-07 Score=94.49 Aligned_cols=225 Identities=18% Similarity=0.140 Sum_probs=134.7
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCceeE
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLLS 229 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~~ 229 (446)
++|++|+|++..+++.. ...+.+ +++|++|++.++...... ..-..+++|++|+++++. +..+.. ..++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~-~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-HGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEEC-SSTTSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccC-hhhhhc-CCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence 68888888887765321 112567 889999999887543221 111244788888888876 443321 3578999
Q ss_pred EEEccccc-----ccccCCCCCcceEEecccc-hhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCC
Q 013265 230 FEYSGPIL-----PFSFRNVPNLVDASFWGCF-SAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEM 303 (446)
Q Consensus 230 l~~~~~~~-----~~~~~~~~~L~~l~l~~~~-~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 303 (446)
|++.++.. +..+.++++|+.+++..+. ...... ..+..+++|+.|++.++.+. ...+..+..+
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~L~~n~l~--------~~~~~~l~~l 171 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR---IDFAGLTSLNELEIKALSLR--------NYQSQSLKSI 171 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---TTTTTCCEEEEEEEEETTCC--------EECTTTTTTC
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCH---hhhhcccccCeeeccCCccc--------ccChhhhhcc
Confidence 98887743 2356788999999997653 111111 34577899999999884321 2235567778
Q ss_pred CcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcch
Q 013265 304 CNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTAD 383 (446)
Q Consensus 304 ~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e 383 (446)
++|++|.+..+... .. ...++..+++|+.|++....- ..... ...+ .. ..+.+|+.+.+.+..-....
T Consensus 172 ~~L~~L~l~~n~~~-~~--~~~~~~~l~~L~~L~L~~n~l---~~~~~-~~~~-~~----~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 172 RDIHHLTLHLSESA-FL--LEIFADILSSVRYLELRDTNL---ARFQF-SPLP-VD----EVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp SEEEEEEEECSBST-TH--HHHHHHSTTTBSEEEEESCBC---TTCCC-CCCS-SC----CCCCCCCEEEEESCEEEHHH
T ss_pred ccCceEecccCccc-cc--chhhHhhcccccEEEccCCcc---ccccc-cccc-hh----hhhhcccceeccccccchhH
Confidence 89999999887522 22 223456789999999965421 11000 0000 00 01267888888765433322
Q ss_pred HHHHHHHHhcCccccceEEecC
Q 013265 384 FELVMYLIFSAKLLEKIIIDPC 405 (446)
Q Consensus 384 ~~~~~~ll~~a~~Le~l~i~~~ 405 (446)
..-+...+.+.+.|+.+.+...
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESC
T ss_pred HHHHHHHhhhhccccccccccc
Confidence 2323333455666666666543
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.49 E-value=4.8e-08 Score=97.18 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=19.3
Q ss_pred ccccccceEEEEEEeChHHHH-HHHhcCCCCcceeeEeccC
Q 013265 153 SFRHLTDLSLTTVGITGEVLE-HLLCYCCPVLEVLNVAESS 192 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~-~ll~~~cp~Le~L~L~~c~ 192 (446)
++++|++|+|.++.+++..+. ..+.. +++|++|++.++.
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~-l~~L~~L~L~~n~ 140 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKP-LTSLEMLVLRDNN 140 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTT-CTTCCEEECCSSB
T ss_pred CcccCCEEeCCCCCCCccccCcccccC-cccCCEEECCCCc
Confidence 455555555555555443221 12444 5555555555554
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.49 E-value=5e-08 Score=97.76 Aligned_cols=171 Identities=15% Similarity=0.057 Sum_probs=75.2
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCce
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNL 227 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L 227 (446)
++++|++|+|.+..++.-. ...+.+ +++|++|+|.++...... .....+++|++|.+.++. +..+.. ..++|
T Consensus 78 ~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIP-LGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSL 154 (477)
T ss_dssp TCTTCCEEECCSSCCCSCC-TTSSTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTC
T ss_pred CCccCCEEECCCCcCCccC-cccccC-CCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCC
Confidence 3455555555544433210 112334 555555555544322111 001122455555555443 222211 13455
Q ss_pred eEEEEcccccc----cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCC
Q 013265 228 LSFEYSGPILP----FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEM 303 (446)
Q Consensus 228 ~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 303 (446)
+.|++.++... ..+.++++|+.+++..+....... ..+..+++|+.|++..+... ..++......
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~~~~~--------~~~~~~~~~~ 223 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYL--------DTMTPNCLYG 223 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT---TCSCSCTTCCEEEEECCTTC--------CEECTTTTTT
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh---hhcccCcccceeeCCCCccc--------cccCcccccC
Confidence 55555544221 123445555555554432221111 23445556666666553211 1112222233
Q ss_pred CcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265 304 CNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL 340 (446)
Q Consensus 304 ~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 340 (446)
.+|++|++..+.-. .+ -...+..+++|+.|++..
T Consensus 224 ~~L~~L~l~~n~l~-~~--~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 224 LNLTSLSITHCNLT-AV--PYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCCSEEEEESSCCC-SC--CHHHHTTCTTCCEEECCS
T ss_pred ccccEEECcCCccc-cc--CHHHhcCccccCeeECCC
Confidence 47777777776411 11 123467888999998854
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.48 E-value=1.3e-07 Score=93.72 Aligned_cols=211 Identities=18% Similarity=0.140 Sum_probs=128.5
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee-EeCCcCccceEEeeccCCCCeEEE----ECCc
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK-VSGPSLKLKHLKLNKLDNLKDLQL----HAPN 226 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~~~~l~~~~i----~~p~ 226 (446)
.++++|++|+|.+..++.-.. ..+.+ +++|++|+|.++....... ....+++|++|.+.++. +..+.- ..++
T Consensus 85 ~~l~~L~~L~Ls~n~i~~i~~-~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 85 KHLRHLEILQLSRNHIRTIEI-GAFNG-LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPS 161 (440)
T ss_dssp SSCSSCCEEECCSSCCCEECG-GGGTT-CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTT
T ss_pred hCCCCCCEEECCCCcCCccCh-hhccC-CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcc
Confidence 467888888888876653211 23667 8889999888875332211 12234788888888876 554432 2478
Q ss_pred eeEEEEcccc-c----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265 227 LLSFEYSGPI-L----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP 301 (446)
Q Consensus 227 L~~l~~~~~~-~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~ 301 (446)
|+.|++.++. . ...+.++++|+.+++..+.+... .-+..+++|+.|+|+++.+. ...+..+.
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~ 228 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-----PNLTPLIKLDELDLSGNHLS--------AIRPGSFQ 228 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-----CCCTTCSSCCEEECTTSCCC--------EECTTTTT
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-----cccCCCcccCEEECCCCccC--------ccChhhhc
Confidence 8888887642 1 23466788888888876643311 12567788888888874321 12244566
Q ss_pred CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eec
Q 013265 302 EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVG 379 (446)
Q Consensus 302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g 379 (446)
.+++|++|.|..+.-... ....+..+++|+.|+|... .+..++.- .+..+.+|+.+.+.+ |..
T Consensus 229 ~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N---------~l~~~~~~---~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVI---ERNAFDNLQSLVEINLAHN---------NLTLLPHD---LFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TCTTCCEEECTTCCCCEE---CTTSSTTCTTCCEEECTTS---------CCCCCCTT---TTSSCTTCCEEECCSSCEEC
T ss_pred cCccCCEEECCCCceeEE---ChhhhcCCCCCCEEECCCC---------CCCccChh---HhccccCCCEEEcCCCCccC
Confidence 788899998877741110 0123567889999988432 12222221 112347899999987 556
Q ss_pred CcchHHHHHHHHhc
Q 013265 380 HTADFELVMYLIFS 393 (446)
Q Consensus 380 ~~~e~~~~~~ll~~ 393 (446)
++.-..+..++-+.
T Consensus 294 dC~l~~l~~~~~~~ 307 (440)
T 3zyj_A 294 NCDILWLSWWIKDM 307 (440)
T ss_dssp SSTTHHHHHHHHTT
T ss_pred CCCchHHHHHHHhc
Confidence 65555555555443
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.47 E-value=3.5e-07 Score=91.43 Aligned_cols=209 Identities=13% Similarity=0.116 Sum_probs=105.7
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeE
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLS 229 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~ 229 (446)
.++++|++|.+.++.+++..- +.. +++|++|++.+|....... ...+++|++|.+.++. +..+. -..++|+.
T Consensus 87 ~~l~~L~~L~l~~n~l~~~~~---~~~-l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 87 KNLTKLVDILMNNNQIADITP---LAN-LTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQ 160 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG---GTT-CTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred hccccCCEEECCCCccccChh---hcC-CCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence 345556666665555443211 445 6666666665553222111 2233556666665553 22211 12355666
Q ss_pred EEEccccc-ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccE
Q 013265 230 FEYSGPIL-PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKH 308 (446)
Q Consensus 230 l~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 308 (446)
|.+.+... ...+.++++|+.+++..+..... ..+..+++|+.|.+.++.+.. .. .+..+++|++
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~~---------~~-~~~~l~~L~~ 225 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISD---------IT-PLGILTNLDE 225 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCC---------CG-GGGGCTTCCE
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCcccc---------cc-cccccCCCCE
Confidence 65543311 12255666677776655432211 224566777777776642210 00 1344677777
Q ss_pred EEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHH
Q 013265 309 LEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVM 388 (446)
Q Consensus 309 L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~ 388 (446)
|.+..+.-. +. ..+..+++|+.|++... ... ..+. +..+.+|+++.+.+..-..-. .
T Consensus 226 L~l~~n~l~-~~----~~l~~l~~L~~L~l~~n---~l~------~~~~-----~~~l~~L~~L~l~~n~l~~~~-~--- 282 (466)
T 1o6v_A 226 LSLNGNQLK-DI----GTLASLTNLTDLDLANN---QIS------NLAP-----LSGLTKLTELKLGANQISNIS-P--- 282 (466)
T ss_dssp EECCSSCCC-CC----GGGGGCTTCSEEECCSS---CCC------CCGG-----GTTCTTCSEEECCSSCCCCCG-G---
T ss_pred EECCCCCcc-cc----hhhhcCCCCCEEECCCC---ccc------cchh-----hhcCCCCCEEECCCCccCccc-c---
Confidence 777766411 11 13566777777777432 111 1111 112478999988875322111 1
Q ss_pred HHHhcCccccceEEecCC
Q 013265 389 YLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 389 ~ll~~a~~Le~l~i~~~~ 406 (446)
+.+.+.|+.+.+....
T Consensus 283 --~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 283 --LAGLTALTNLELNENQ 298 (466)
T ss_dssp --GTTCTTCSEEECCSSC
T ss_pred --ccCCCccCeEEcCCCc
Confidence 4677899999887654
No 28
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.47 E-value=2.9e-07 Score=86.66 Aligned_cols=165 Identities=16% Similarity=0.125 Sum_probs=97.3
Q ss_pred ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCcee
Q 013265 151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLL 228 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~ 228 (446)
...+++|++|+|+++.+++-. . +.. +++|+.|++.++.... +.....+++|++|.++++. +..+. -..++|+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~--~-~~~-l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~ 132 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLA--P-LKN-LTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQ 132 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCG--G-GTT-CCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCC
T ss_pred hhccCCCCEEEccCCcCCCCh--h-Hcc-CCCCCEEEccCCcCCC-chhhcCCCCCCEEECCCCC-CCCchhhcCCCCCC
Confidence 456889999999888776532 2 677 9999999998876332 2222344778888888776 33321 1236777
Q ss_pred EEEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcc
Q 013265 229 SFEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNL 306 (446)
Q Consensus 229 ~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L 306 (446)
+|++.++... ..+.++++|+.+++..+..... .. +..+++|+.|.+.++.+. .++ .+..+++|
T Consensus 133 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~----~~-l~~l~~L~~L~l~~n~l~---------~~~-~l~~l~~L 197 (308)
T 1h6u_A 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL----TP-LANLSKLTTLKADDNKIS---------DIS-PLASLPNL 197 (308)
T ss_dssp EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC----GG-GTTCTTCCEEECCSSCCC---------CCG-GGGGCTTC
T ss_pred EEECCCCccCcCccccCCCCccEEEccCCcCCCC----hh-hcCCCCCCEEECCCCccC---------cCh-hhcCCCCC
Confidence 7777665321 1255667777777765532211 12 556677777777664221 011 14456677
Q ss_pred cEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 307 KHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 307 ~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
++|++..+.-... . -+..+|+|+.|++...
T Consensus 198 ~~L~L~~N~l~~~-~----~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 198 IEVHLKNNQISDV-S----PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CEEECTTSCCCBC-G----GGTTCTTCCEEEEEEE
T ss_pred CEEEccCCccCcc-c----cccCCCCCCEEEccCC
Confidence 7777766642111 1 1466777777777544
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.46 E-value=8.2e-08 Score=89.30 Aligned_cols=173 Identities=18% Similarity=0.133 Sum_probs=120.3
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce--eEeCCcCccceEEeeccCCCCeEEE----ECC
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLDNLKDLQL----HAP 225 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~~l~~~~i----~~p 225 (446)
..+++|++|+|.+..+++-. ...+.. +++|++|++.++..+..+ .....+++|++|.+.++. +..+.. ..+
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~-~~~~~~-l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARID-AAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLA 129 (285)
T ss_dssp TTCTTCCEEECCSSCCCEEC-TTTTTT-CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred ccCCCCCEEECCCCccceeC-HhhcCC-ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCc
Confidence 56889999999987765421 123677 999999999998644433 222345789999999886 443321 358
Q ss_pred ceeEEEEcccccc----cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265 226 NLLSFEYSGPILP----FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP 301 (446)
Q Consensus 226 ~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~ 301 (446)
+|++|++.++... ..+.++++|+.+++..+.+..... ..+..+++|+.|.+.++.+. ...+..+.
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~ 198 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE---RAFRGLHSLDRLLLHQNRVA--------HVHPHAFR 198 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCC--------EECTTTTT
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH---HHhcCccccCEEECCCCccc--------ccCHhHcc
Confidence 9999999887432 236788999999998764432222 34677899999999985331 12245667
Q ss_pred CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 302 EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
.+++|++|++..+.-... ....+..+|+|+.|++...
T Consensus 199 ~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSAL---PTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp TCTTCCEEECCSSCCSCC---CHHHHTTCTTCCEEECCSS
T ss_pred CcccccEeeCCCCcCCcC---CHHHcccCcccCEEeccCC
Confidence 789999999998852221 1245688999999999654
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.45 E-value=7.4e-08 Score=95.91 Aligned_cols=210 Identities=17% Similarity=0.125 Sum_probs=119.0
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCc
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPN 226 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~ 226 (446)
.++++|+.|+|++..+++-. ...+.+ +++|++|+|.++...... .....+++|++|.++++. +..+.. ..++
T Consensus 96 ~~l~~L~~L~Ls~n~i~~~~-~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 172 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNSIRQIE-VGAFNG-LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPS 172 (452)
T ss_dssp TTCTTCCEEECCSSCCCEEC-TTTTTT-CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTT
T ss_pred CCCCCCCEEECCCCccCCcC-hhhccC-cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCc
Confidence 46777888887776655321 123556 788888888776533211 111234677888887775 444422 2477
Q ss_pred eeEEEEcccc-c----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265 227 LLSFEYSGPI-L----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP 301 (446)
Q Consensus 227 L~~l~~~~~~-~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~ 301 (446)
|+.|++.++. . ...+.++++|+.++++.+.+... .-+..+++|+.|+++++.+. ...+..+.
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~ 239 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-----PNLTPLVGLEELEMSGNHFP--------EIRPGSFH 239 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-----CCCTTCTTCCEEECTTSCCS--------EECGGGGT
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-----ccccccccccEEECcCCcCc--------ccCccccc
Confidence 7777776631 1 12456677788887766533211 22456777888888774321 11234456
Q ss_pred CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eec
Q 013265 302 EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVG 379 (446)
Q Consensus 302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g 379 (446)
.+++|++|.|..+.-... ....+..+++|+.|+|... .+..++.- .+..+.+|+.+.+.+ +..
T Consensus 240 ~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N---------~l~~~~~~---~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLI---ERNAFDGLASLVELNLAHN---------NLSSLPHD---LFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECCSS---------CCSCCCTT---SSTTCTTCCEEECCSSCEEC
T ss_pred CccCCCEEEeCCCcCceE---CHHHhcCCCCCCEEECCCC---------cCCccChH---HhccccCCCEEEccCCCcCC
Confidence 677888888876641110 0123566788888888432 12222211 112347899999887 555
Q ss_pred CcchHHHHHHHHh
Q 013265 380 HTADFELVMYLIF 392 (446)
Q Consensus 380 ~~~e~~~~~~ll~ 392 (446)
++.-..+..++-+
T Consensus 305 dC~~~~l~~~l~~ 317 (452)
T 3zyi_A 305 DCDILWLAWWLRE 317 (452)
T ss_dssp STTTHHHHHHHHH
T ss_pred CCCchHHHHHHHH
Confidence 6555555555544
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.44 E-value=1.1e-07 Score=98.35 Aligned_cols=174 Identities=17% Similarity=0.074 Sum_probs=92.0
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE--eCCcCccceEEeeccCCCCeEEE------E
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV--SGPSLKLKHLKLNKLDNLKDLQL------H 223 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~~~~l~~~~i------~ 223 (446)
..+++|++|++.++.+++.. ...+.. +|+|++|++.++.....+.. ...+++|++|.+.++. +..+.. .
T Consensus 298 ~~l~~L~~L~l~~n~l~~~~-~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 298 VGLSTLKKLVLSANKFENLC-QISASN-FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRN 374 (606)
T ss_dssp CSCTTCCEEECTTCCCSBGG-GGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTT
T ss_pred cccccCCEEECccCCcCcCc-hhhhhc-cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhccc
Confidence 45678888888877766431 123566 88888888887754332211 1234677777777765 444431 2
Q ss_pred CCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccC
Q 013265 224 APNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHD 299 (446)
Q Consensus 224 ~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~ 299 (446)
.++|++|++.++.. +..+.++++|+.+++..+....... ...+..+++|+.|.+.++.+. ...+..
T Consensus 375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~--------~~~~~~ 444 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA--QSPFQNLHLLKVLNLSHSLLD--------ISSEQL 444 (606)
T ss_dssp CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT--CCTTTTCTTCCEEECTTCCCB--------TTCTTT
T ss_pred CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc--chhhhCcccCCEEECCCCccC--------CcCHHH
Confidence 46777777766532 2345566777777776543221110 023455666677666653221 111233
Q ss_pred CCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEE
Q 013265 300 IPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSL 338 (446)
Q Consensus 300 ~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l 338 (446)
+..+++|++|.+..+.-..........+..+++|+.|++
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 445566666666555311100000112455666666666
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.40 E-value=4.7e-08 Score=101.03 Aligned_cols=121 Identities=17% Similarity=0.095 Sum_probs=56.2
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce---eEeCCcCccceEEeeccCCCCeEE---EECCc
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL---KVSGPSLKLKHLKLNKLDNLKDLQ---LHAPN 226 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~---~i~~~~~~L~~L~i~~~~~l~~~~---i~~p~ 226 (446)
.+++|++|++.++...... -+.. +|+|+.|++.++...... .....+++|++|.+.++. +..+. ...++
T Consensus 326 ~l~~L~~L~l~~n~~~~~~---~~~~-l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~ 400 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF---KKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEE 400 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC---CCCC-CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTT
T ss_pred CCCccceeeccCCcCccch---hhcc-CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCC
Confidence 5667777777766322211 1334 666777766665422110 001123566666666554 22221 01355
Q ss_pred eeEEEEccccc----c-cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265 227 LLSFEYSGPIL----P-FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT 281 (446)
Q Consensus 227 L~~l~~~~~~~----~-~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~ 281 (446)
|+.|++.++.. + ..+.++++|+.+++..+....... ..+..+++|+.|.+.+
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD---GIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT---TTTTTCTTCCEEECTT
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch---hhhcCCCCCCEEECCC
Confidence 66665555421 1 234455556665555442221111 2334455555555554
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.40 E-value=6.6e-08 Score=97.22 Aligned_cols=230 Identities=10% Similarity=0.038 Sum_probs=145.4
Q ss_pred CCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEe
Q 013265 121 RVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVS 200 (446)
Q Consensus 121 ~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~ 200 (446)
++++|.+..... -.+|... ...+++|++|+|+++.+++.. . +.. +++|+.|+|.+|... . +.
T Consensus 35 ~L~~L~Ls~n~l---------~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-l~~-l~~L~~L~Ls~N~l~-~--l~ 96 (487)
T 3oja_A 35 NVKELDLSGNPL---------SQISAAD--LAPFTKLELLNLSSNVLYETL--D-LES-LSTLRTLDLNNNYVQ-E--LL 96 (487)
T ss_dssp GCCEEECCSSCC---------CCCCGGG--GTTCTTCCEEECTTSCCEEEE--E-CTT-CTTCCEEECCSSEEE-E--EE
T ss_pred CccEEEeeCCcC---------CCCCHHH--HhCCCCCCEEEeeCCCCCCCc--c-ccc-CCCCCEEEecCCcCC-C--CC
Confidence 688887754321 1222221 357889999999987765421 1 677 999999999988422 1 22
Q ss_pred CCcCccceEEeeccCCCCeEEEE-CCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce
Q 013265 201 GPSLKLKHLKLNKLDNLKDLQLH-APNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH 275 (446)
Q Consensus 201 ~~~~~L~~L~i~~~~~l~~~~i~-~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~ 275 (446)
+.++|+.|.++++. +..+... .++|+.|++.++.. +..++++++|+.++++.+.+..... ..+...+++|+
T Consensus 97 -~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~~l~~L~ 172 (487)
T 3oja_A 97 -VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF--AELAASSDTLE 172 (487)
T ss_dssp -ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG--GGGGGGTTTCC
T ss_pred -CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh--HHHhhhCCccc
Confidence 22789999999987 5555433 48999999988743 3456778999999998764432211 14455789999
Q ss_pred EEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccc
Q 013265 276 TLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTI 355 (446)
Q Consensus 276 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~ 355 (446)
.|+|+++.+. ..+ ....+++|+.|+|+.+.-..- ..-+..+++|+.|++... .+..+
T Consensus 173 ~L~Ls~N~l~---------~~~-~~~~l~~L~~L~Ls~N~l~~~----~~~~~~l~~L~~L~Ls~N---------~l~~l 229 (487)
T 3oja_A 173 HLNLQYNFIY---------DVK-GQVVFAKLKTLDLSSNKLAFM----GPEFQSAAGVTWISLRNN---------KLVLI 229 (487)
T ss_dssp EEECTTSCCC---------EEE-CCCCCTTCCEEECCSSCCCEE----CGGGGGGTTCSEEECTTS---------CCCEE
T ss_pred EEecCCCccc---------ccc-ccccCCCCCEEECCCCCCCCC----CHhHcCCCCccEEEecCC---------cCccc
Confidence 9999985431 111 233578999999998852211 112567899999999432 22224
Q ss_pred cCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEE
Q 013265 356 KDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIII 402 (446)
Q Consensus 356 p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i 402 (446)
|.... .+.+|+.+.+.+-...+.. +...+...+.|+.+.+
T Consensus 230 p~~l~----~l~~L~~L~l~~N~l~c~~---~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 230 EKALR----FSQNLEHFDLRGNGFHCGT---LRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CTTCC----CCTTCCEEECTTCCBCHHH---HHHHHTTCHHHHHHHH
T ss_pred chhhc----cCCCCCEEEcCCCCCcCcc---hHHHHHhCCCCcEEec
Confidence 44332 3478999988775444222 2223355555555554
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.39 E-value=2.1e-07 Score=93.25 Aligned_cols=222 Identities=18% Similarity=0.117 Sum_probs=127.5
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEE----EECCc
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQ----LHAPN 226 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~----i~~p~ 226 (446)
.++++|++|+|.+..+++-. ...+.+ +++|+.|+|.++...... .....+++|++|.+.++. +..+. -..++
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~-~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVE-PGAFNN-LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYN 129 (477)
T ss_dssp TTCTTCCEEECTTSCCCEEC-TTTTTT-CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred cCCCCCCEEECCCCccCEeC-hhhhhC-CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccCChhHcccccc
Confidence 46788888888876655321 122566 888888888877533221 112344778888888775 43331 13478
Q ss_pred eeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265 227 LLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE 302 (446)
Q Consensus 227 L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
|++|++.+... +..+.++++|+++++..+.+..... ..+..+++|+.|.+..+.+. ......+..
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~i~--------~~~~~~~~~ 198 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT---EALSHLHGLIVLRLRHLNIN--------AIRDYSFKR 198 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH---HHHTTCTTCCEEEEESCCCC--------EECTTCSCS
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh---hHhcccCCCcEEeCCCCcCc--------EeChhhccc
Confidence 88888877632 2356678888888887664332222 45667888888888874321 111234566
Q ss_pred CCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcc
Q 013265 303 MCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTA 382 (446)
Q Consensus 303 ~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~ 382 (446)
+++|++|++..+.....+. .-....++|++|++... . +..+|. ..+..+.+|+++.+.+-.-..-
T Consensus 199 l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n---~------l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMT---PNCLYGLNLTSLSITHC---N------LTAVPY---LAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp CTTCCEEEEECCTTCCEEC---TTTTTTCCCSEEEEESS---C------CCSCCH---HHHTTCTTCCEEECCSSCCCEE
T ss_pred CcccceeeCCCCccccccC---cccccCccccEEECcCC---c------ccccCH---HHhcCccccCeeECCCCcCCcc
Confidence 7888888888764221110 01122347888888543 1 111121 0111237788888876432111
Q ss_pred hHHHHHHHHhcCccccceEEecCC
Q 013265 383 DFELVMYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 383 e~~~~~~ll~~a~~Le~l~i~~~~ 406 (446)
. ...+.+.+.|+.+.+....
T Consensus 264 ~----~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 264 E----GSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp C----TTSCTTCTTCCEEECCSSC
T ss_pred C----hhhccccccCCEEECCCCc
Confidence 1 0123567889988887653
No 35
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.39 E-value=3.6e-08 Score=95.18 Aligned_cols=182 Identities=14% Similarity=0.093 Sum_probs=81.7
Q ss_pred ccc-cccceEEEEEEeChH---HHHHHHhcCC-CCcceeeEeccCCCCce-e-----EeCCcCccceEEeeccCCCCeEE
Q 013265 153 SFR-HLTDLSLTTVGITGE---VLEHLLCYCC-PVLEVLNVAESSSLTSL-K-----VSGPSLKLKHLKLNKLDNLKDLQ 221 (446)
Q Consensus 153 ~~~-~L~~L~L~~~~~~~~---~l~~ll~~~c-p~Le~L~L~~c~~~~~~-~-----i~~~~~~L~~L~i~~~~~l~~~~ 221 (446)
.++ +|++|+|+++.+++. .+..++.. + ++|++|++.+|...... . +....++|++|.++++. +....
T Consensus 48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~ 125 (362)
T 3goz_A 48 NTPASVTSLNLSGNSLGFKNSDELVQILAA-IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS 125 (362)
T ss_dssp TCCTTCCEEECCSSCGGGSCHHHHHHHHHT-SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred hCCCceeEEECcCCCCCHHHHHHHHHHHhc-cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence 345 677777777666542 34454555 4 67777777766532111 0 11111466666666665 33222
Q ss_pred EE---------CCceeEEEEccccccc--------ccCCCC-CcceEEecccchhh-hhhhhhhhhccC-CCceEEEEee
Q 013265 222 LH---------APNLLSFEYSGPILPF--------SFRNVP-NLVDASFWGCFSAY-IAKNLCQHSIFL-VQLHTLKLDT 281 (446)
Q Consensus 222 i~---------~p~L~~l~~~~~~~~~--------~~~~~~-~L~~l~l~~~~~~~-~~~~l~~~l~~l-~~l~~L~L~~ 281 (446)
.. .++|++|++.++.... .+...+ +|+.+++..+.... ....+...+..+ ++|+.|+|++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 11 1356666665543210 111222 56666655443321 112233344444 2566666655
Q ss_pred cccccccchhcccccccCCCC-CCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEE
Q 013265 282 CHLLIGDSEYRAGRYLHDIPE-MCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKL 340 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~ 340 (446)
+.+... ....++..+.. .++|++|+|+.+. .......+..+++.+++|+.|+++.
T Consensus 206 N~i~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 206 NLLGLK----SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp SCGGGS----CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred CCCChh----HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 432110 00001111111 2356666665553 2222334445555556666665543
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.39 E-value=1.5e-06 Score=87.86 Aligned_cols=262 Identities=11% Similarity=0.058 Sum_probs=155.5
Q ss_pred CCcceEEEEEecCCcchHHHHHHHHHHcCCcEEEEeeeccccccccccccccccccCCc--cccccccceEEEEEEe--C
Q 013265 93 HCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFY--SSFRHLTDLSLTTVGI--T 168 (446)
Q Consensus 93 ~~l~~l~l~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~L~~L~L~~~~~--~ 168 (446)
+.++.+.+.........+..+........+++|.+...... -.+|..++.. ..+++|+.+++.+..+ .
T Consensus 220 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~--------~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p 291 (520)
T 2z7x_B 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ--------GQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291 (520)
T ss_dssp TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEE--------SCCCCCCCCCCSCCCCEEEEEEEEECCCCSC
T ss_pred cchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccccc--------CccccchhhcccccCceeEeccccccceecc
Confidence 34777777543222223444444444458998888654311 1355554332 5678888888887665 2
Q ss_pred hHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCe----EEEECCceeEEEEcccccc------
Q 013265 169 GEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKD----LQLHAPNLLSFEYSGPILP------ 238 (446)
Q Consensus 169 ~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~----~~i~~p~L~~l~~~~~~~~------ 238 (446)
...+..++ . .+.|+.|.+.++..... .....+++|++|.++++. +.. ..-..++|++|++.++...
T Consensus 292 ~~~~~~~~-~-~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 292 QSYIYEIF-S-NMNIKNFTVSGTRMVHM-LCPSKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp THHHHHHH-H-TCCCSEEEEESSCCCCC-CCCSSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred hhhhhccc-c-cCceeEEEcCCCccccc-cchhhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccch
Confidence 23444432 2 36899999998864332 222455789999999876 322 1124588999988877432
Q ss_pred cccCCCCCcceEEecccchhh-hhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCC
Q 013265 239 FSFRNVPNLVDASFWGCFSAY-IAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKV 317 (446)
Q Consensus 239 ~~~~~~~~L~~l~l~~~~~~~-~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 317 (446)
..+.++++|+.++++.+.... ... ..+..+++|+.|.++++.+. ...+..++ ++|+.|++..+.-.
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~---~~~~~l~~L~~L~Ls~N~l~--------~~~~~~l~--~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKK---GDCSWTKSLLSLNMSSNILT--------DTIFRCLP--PRIKVLDLHSNKIK 434 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGG---CSCCCCTTCCEEECCSSCCC--------GGGGGSCC--TTCCEEECCSSCCC
T ss_pred HHHhhCCCCCEEECCCCcCCccccc---chhccCccCCEEECcCCCCC--------cchhhhhc--ccCCEEECCCCccc
Confidence 236788899999997764432 111 34567789999999885331 11122222 68999999888521
Q ss_pred CCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHhcCc
Q 013265 318 NDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIFSAK 395 (446)
Q Consensus 318 ~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~~a~ 395 (446)
. +..-+..+++|+.|++... .+..+|.. .+..+.+|+++.+.+ +.+......++...+++..
T Consensus 435 -~---ip~~~~~l~~L~~L~L~~N---------~l~~l~~~---~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~ 498 (520)
T 2z7x_B 435 -S---IPKQVVKLEALQELNVASN---------QLKSVPDG---IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 498 (520)
T ss_dssp -C---CCGGGGGCTTCCEEECCSS---------CCCCCCTT---TTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTT
T ss_pred -c---cchhhhcCCCCCEEECCCC---------cCCccCHH---HhccCCcccEEECcCCCCcccCCchHHHHHHHHhcc
Confidence 1 2222348899999998432 12223332 111347899999987 4555555566344444443
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.39 E-value=3.8e-07 Score=91.11 Aligned_cols=208 Identities=17% Similarity=0.159 Sum_probs=120.6
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeE
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLS 229 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~ 229 (446)
..+++|++|++.++.+++-. -+.. +++|+.|.+.+... .+.-...+++|+.|.++++. +..+. -..++|++
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~---~~~~-l~~L~~L~l~~~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 203 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDIS---ALSG-LTSLQQLSFGNQVT--DLKPLANLTTLERLDISSNK-VSDISVLAKLTNLES 203 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCG---GGTT-CTTCSEEEEEESCC--CCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred cCCCCCCEEECCCCccCCCh---hhcc-CCcccEeecCCccc--CchhhccCCCCCEEECcCCc-CCCChhhccCCCCCE
Confidence 45667777777776665421 1556 77777777754221 11112234677777777765 33321 12477888
Q ss_pred EEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCccc
Q 013265 230 FEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLK 307 (446)
Q Consensus 230 l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 307 (446)
|.+.++... ..++.+++|+.+++..+..... ..+..+++|+.|++.++.+. ... .+..+++|+
T Consensus 204 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~---------~~~-~~~~l~~L~ 268 (466)
T 1o6v_A 204 LIATNNQISDITPLGILTNLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQIS---------NLA-PLSGLTKLT 268 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCC---------CCG-GGTTCTTCS
T ss_pred EEecCCcccccccccccCCCCEEECCCCCcccc-----hhhhcCCCCCEEECCCCccc---------cch-hhhcCCCCC
Confidence 877776421 2255677788888866532211 23567788888888774331 111 145678888
Q ss_pred EEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHH
Q 013265 308 HLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELV 387 (446)
Q Consensus 308 ~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~ 387 (446)
+|.+..+.-.... . +..+++|+.|++... ... ..+. +..+.+|+.+.+.+..-..-. .
T Consensus 269 ~L~l~~n~l~~~~-~----~~~l~~L~~L~L~~n---~l~------~~~~-----~~~l~~L~~L~L~~n~l~~~~-~-- 326 (466)
T 1o6v_A 269 ELKLGANQISNIS-P----LAGLTALTNLELNEN---QLE------DISP-----ISNLKNLTYLTLYFNNISDIS-P-- 326 (466)
T ss_dssp EEECCSSCCCCCG-G----GTTCTTCSEEECCSS---CCS------CCGG-----GGGCTTCSEEECCSSCCSCCG-G--
T ss_pred EEECCCCccCccc-c----ccCCCccCeEEcCCC---ccc------Cchh-----hcCCCCCCEEECcCCcCCCch-h--
Confidence 8888877422211 1 567888888888432 111 1111 113478999999875322111 1
Q ss_pred HHHHhcCccccceEEecCC
Q 013265 388 MYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 388 ~~ll~~a~~Le~l~i~~~~ 406 (446)
+.+.+.|+++.+....
T Consensus 327 ---~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 327 ---VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp ---GGGCTTCCEEECCSSC
T ss_pred ---hccCccCCEeECCCCc
Confidence 4688999999998764
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.39 E-value=2.8e-07 Score=94.35 Aligned_cols=214 Identities=14% Similarity=0.106 Sum_probs=117.9
Q ss_pred cccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE------ECCceeE
Q 013265 156 HLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL------HAPNLLS 229 (446)
Q Consensus 156 ~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i------~~p~L~~ 229 (446)
+|++|.+.++.++. +.. .. +++|++|.+.++........ ..+++|+.|.++++. +..+.. ..++|++
T Consensus 305 ~L~~L~l~~n~~~~--l~~--~~-l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 305 GWQHLELVNCKFGQ--FPT--LK-LKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKY 377 (570)
T ss_dssp CCSEEEEESCBCSS--CCB--CB-CSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCE
T ss_pred CccEEeeccCcccc--cCc--cc-ccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCccccccccccccCccCE
Confidence 56666666655542 111 34 66677777766654433322 334677777777765 443321 2477888
Q ss_pred EEEccccc---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcc
Q 013265 230 FEYSGPIL---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNL 306 (446)
Q Consensus 230 l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L 306 (446)
|++.++.. +..+.++++|+.+++..+....... ...+..+++|+.|++..+.+. ...+..+..+++|
T Consensus 378 L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L 447 (570)
T 2z63_A 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTR--------VAFNGIFNGLSSL 447 (570)
T ss_dssp EECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT--SCTTTTCTTCCEEECTTSCCE--------ECCTTTTTTCTTC
T ss_pred EECCCCccccccccccccCCCCEEEccCCccccccc--hhhhhcCCCCCEEeCcCCccc--------ccchhhhhcCCcC
Confidence 87776632 2236677788888876653221110 024567788888888774221 1223455667888
Q ss_pred cEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee--cCcchH
Q 013265 307 KHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV--GHTADF 384 (446)
Q Consensus 307 ~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~--g~~~e~ 384 (446)
++|.+..+.-... .+...+..+|+|+.|++... ...+ ..|..+. .+.+|+++.+.+.. +...+
T Consensus 448 ~~L~l~~n~l~~~--~~p~~~~~l~~L~~L~l~~n---~l~~-----~~~~~~~----~l~~L~~L~l~~n~l~~~~~~- 512 (570)
T 2z63_A 448 EVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQC---QLEQ-----LSPTAFN----SLSSLQVLNMASNQLKSVPDG- 512 (570)
T ss_dssp CEEECTTCEEGGG--EECSCCTTCTTCCEEECTTS---CCCE-----ECTTTTT----TCTTCCEEECCSSCCSCCCTT-
T ss_pred cEEECcCCcCccc--cchhhhhcccCCCEEECCCC---cccc-----CChhhhh----cccCCCEEeCCCCcCCCCCHH-
Confidence 8888877631100 11234577888888888422 1110 0122221 34678888887632 22211
Q ss_pred HHHHHHHhcCccccceEEecCC
Q 013265 385 ELVMYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 385 ~~~~~ll~~a~~Le~l~i~~~~ 406 (446)
.+.+.+.|+.+.+....
T Consensus 513 -----~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 513 -----IFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp -----TTTTCTTCCEEECCSSC
T ss_pred -----HhhcccCCcEEEecCCc
Confidence 23566788887777654
No 39
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.38 E-value=2.8e-07 Score=86.80 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=90.6
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeEE
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLSF 230 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~l 230 (446)
.+++|++|.+.++.+++- . -+.. +++|+.|++.+|....... ...+++|++|.+.++. +..+. -..++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l--~-~~~~-l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI--E-GVQY-LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC--T-TGGG-CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc--h-hhhc-cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEE
Confidence 466777777766655432 1 1456 7777777777764332222 2344677777777765 33331 123677777
Q ss_pred EEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccE
Q 013265 231 EYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKH 308 (446)
Q Consensus 231 ~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 308 (446)
++.++... ..+.++++|+.+++..+..... ..+..+++|+.|.+.++.+. .++ .+..+++|++
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~---------~~~-~l~~l~~L~~ 177 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-----SPLAGLTNLQYLSIGNAQVS---------DLT-PLANLSKLTT 177 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSCCC---------CCG-GGTTCTTCCE
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcC-----ccccCCCCccEEEccCCcCC---------CCh-hhcCCCCCCE
Confidence 77766321 1256677777777765532211 11556777777777764221 111 1455677777
Q ss_pred EEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 309 LEIIGTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 309 L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
|.+..+.-.. ... +..+|+|+.|++.
T Consensus 178 L~l~~n~l~~-~~~----l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 178 LKADDNKISD-ISP----LASLPNLIEVHLK 203 (308)
T ss_dssp EECCSSCCCC-CGG----GGGCTTCCEEECT
T ss_pred EECCCCccCc-Chh----hcCCCCCCEEEcc
Confidence 7777664211 111 5667777777773
No 40
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.38 E-value=2.1e-07 Score=93.60 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=86.4
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY 232 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~ 232 (446)
.+++|++|+|+++.+++-. ...+.. +++|+.|+|.+|....... ...+++|+.|.++++. +..+. ..|+|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~-~~~~~~-l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQIS-AADLAP-FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL-VGPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCC-GGGGTT-CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCC-HHHHhC-CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC-CCCCcCEEEC
Confidence 4556777777766655321 122455 7777777777665433333 2234667777777664 44443 2367777776
Q ss_pred ccccc-ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC-CCCCcccEEE
Q 013265 233 SGPIL-PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI-PEMCNLKHLE 310 (446)
Q Consensus 233 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~ 310 (446)
.++.. ......+++|+.+++..+.+..... ..+..+++|+.|+++++.+. ...+..+ ..+++|++|+
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~--------~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEID--------TVNFAELAASSDTLEHLN 175 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSGGG---BCGGGGSSEEEEECTTSCCC--------EEEGGGGGGGTTTCCEEE
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCCCc---hhhcCCCCCCEEECCCCCCC--------CcChHHHhhhCCcccEEe
Confidence 66643 2223345667777776553322211 23455667777777663221 0111222 2456777777
Q ss_pred EEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 311 IIGTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 311 L~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
|+.+.-... .. ...+|+|+.|+++
T Consensus 176 Ls~N~l~~~-~~----~~~l~~L~~L~Ls 199 (487)
T 3oja_A 176 LQYNFIYDV-KG----QVVFAKLKTLDLS 199 (487)
T ss_dssp CTTSCCCEE-EC----CCCCTTCCEEECC
T ss_pred cCCCccccc-cc----cccCCCCCEEECC
Confidence 766631110 00 1236677777763
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.38 E-value=4.4e-08 Score=92.54 Aligned_cols=40 Identities=18% Similarity=0.048 Sum_probs=19.0
Q ss_pred CCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265 242 RNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT 281 (446)
Q Consensus 242 ~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~ 281 (446)
.++++|+.+++..+.+.........+...+++|+.|+++.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence 4555666666654432211111113444556666666665
No 42
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.38 E-value=8e-08 Score=102.24 Aligned_cols=60 Identities=23% Similarity=0.245 Sum_probs=32.9
Q ss_pred cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE--eCCcCccceEEeeccC
Q 013265 154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV--SGPSLKLKHLKLNKLD 215 (446)
Q Consensus 154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~~~ 215 (446)
+++|++|+|.++.+++. +...+.. +++|++|++.+|...+.+.. ...+++|++|.+.++.
T Consensus 293 ~~~L~~L~Ls~n~l~~~-~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGA-VPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp CTTCSEEECCSSEEEEC-CCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred cCcCCEEECcCCcCCCc-cchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 47777777777665432 1122556 77777777776653322211 1233566666666553
No 43
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.36 E-value=1.1e-07 Score=101.06 Aligned_cols=64 Identities=23% Similarity=0.211 Sum_probs=35.5
Q ss_pred ccccccccceEEEEEEeChHHHH-HHHhcCCCCcceeeEeccCCCCce--eEeCCcCccceEEeeccC
Q 013265 151 YSSFRHLTDLSLTTVGITGEVLE-HLLCYCCPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLD 215 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~~~~~~l~-~ll~~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~ 215 (446)
...+++|++|+|+++.+++.... .-+.. |++|++|++.+|...... .+...+++|++|+++++.
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp CCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred hccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 34667777777777666532111 12566 777777777766432221 111233566666666554
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.36 E-value=1e-07 Score=98.57 Aligned_cols=229 Identities=16% Similarity=0.053 Sum_probs=107.6
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee---EeCCcCccceEEeeccCCCCeEEE----EC
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK---VSGPSLKLKHLKLNKLDNLKDLQL----HA 224 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~---i~~~~~~L~~L~i~~~~~l~~~~i----~~ 224 (446)
..+++|++|.+.++.+........+.. +++|++|++.++....... ....+++|++|.+.++. +..+.. ..
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 399 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLEN-LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKEC 399 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTT-CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTC
T ss_pred hccCcCCEEECCCCCcccccchhhhhc-cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCC
Confidence 356677777777665442211122455 7777777777665432210 11233567777776664 322211 23
Q ss_pred CceeEEEEccccc-----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccC
Q 013265 225 PNLLSFEYSGPIL-----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHD 299 (446)
Q Consensus 225 p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~ 299 (446)
++|++|++.++.. +..+.++++|+.+++..+....... ..+..+++|+.|++.++.+... .......
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~ 471 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE---QLFDGLPALQHLNLQGNHFPKG-----NIQKTNS 471 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT---TTTTTCTTCCEEECTTCBCGGG-----EECSSCG
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH---HHHhCCCCCCEEECCCCCCCcc-----ccccchh
Confidence 6666666665532 1224556666666665553322222 3445566666666665432100 0001123
Q ss_pred CCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccc--c------------ccccccccCCCCccccc
Q 013265 300 IPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYE--S------------YESVKTIKDQPYLSFTE 365 (446)
Q Consensus 300 ~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~--~------------~~~~~~~p~c~~~~~~~ 365 (446)
+..+++|++|++..+.-... ....+..+|+|+.|++....-.... . ...+...+. ..+..
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~---~~~~~ 545 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSI---DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILP---SLLPI 545 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCG---GGHHH
T ss_pred hccCCCccEEECCCCccCcc---ChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCH---hhccc
Confidence 44556666666655531100 0112345566666666332100000 0 000000110 11223
Q ss_pred cCCCcEEEEEe--eecCcchHHHHHHHHhcCcc
Q 013265 366 LRSIRVVELLG--FVGHTADFELVMYLIFSAKL 396 (446)
Q Consensus 366 l~~L~~v~i~~--~~g~~~e~~~~~~ll~~a~~ 396 (446)
+.+|+++.+.| +.+......++.++-++...
T Consensus 546 l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~ 578 (606)
T 3t6q_A 546 LSQQRTINLRQNPLDCTCSNIYFLEWYKENMQK 578 (606)
T ss_dssp HHTSSEEECTTCCEECSGGGHHHHHHHHHCGGG
T ss_pred CCCCCEEeCCCCCccccCCcHHHHHHHHhCccc
Confidence 46677777766 45666666777776655433
No 45
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.36 E-value=6.5e-07 Score=78.33 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=77.8
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY 232 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~ 232 (446)
.+++|+.|++.+..+++-. -+.. +++|++|++.+| ....+.....+++|++|.+.++. +..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~---~l~~-l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~------------- 102 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT---GIEY-AHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTS------------- 102 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT---TGGG-CTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBG-------------
T ss_pred hcCCccEEeccCCCccChH---HHhc-CCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCc-------------
Confidence 5667777777776665311 1556 777777777777 22222211223445555554443 110
Q ss_pred cccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEE
Q 013265 233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEII 312 (446)
Q Consensus 233 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 312 (446)
..+..+.++++|+.+++..+....... ..+..+++|+.|.+.++... ..++ .+..+++|++|.+.
T Consensus 103 ---~~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~l~~l~~L~~L~L~~n~~i--------~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 103 ---DKIPNLSGLTSLTLLDISHSAHDDSIL---TKINTLPKVNSIDLSYNGAI--------TDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp ---GGSCCCTTCTTCCEEECCSSBCBGGGH---HHHTTCSSCCEEECCSCTBC--------CCCG-GGGGCSSCCEEECT
T ss_pred ---ccChhhcCCCCCCEEEecCCccCcHhH---HHHhhCCCCCEEEccCCCCc--------cccH-hhcCCCCCCEEECC
Confidence 012234456666666666553322111 44566777777777774210 1111 34456777777776
Q ss_pred ecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 313 GTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 313 ~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
.+.-. ++. .+..+|+|+.|++.
T Consensus 168 ~n~i~-~~~----~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 168 FDGVH-DYR----GIEDFPKLNQLYAF 189 (197)
T ss_dssp TBCCC-CCT----TGGGCSSCCEEEEC
T ss_pred CCCCc-ChH----HhccCCCCCEEEee
Confidence 66411 111 35667777777774
No 46
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.35 E-value=6.4e-08 Score=94.24 Aligned_cols=183 Identities=14% Similarity=0.071 Sum_probs=122.8
Q ss_pred cccccccceEEEEEEeChH---HHHHHHhcCCCCcceeeEeccCCCCc--eeEeC---Cc---------CccceEEeecc
Q 013265 152 SSFRHLTDLSLTTVGITGE---VLEHLLCYCCPVLEVLNVAESSSLTS--LKVSG---PS---------LKLKHLKLNKL 214 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~~cp~Le~L~L~~c~~~~~--~~i~~---~~---------~~L~~L~i~~~ 214 (446)
..+++|++|+|+++.+++. .+...+.. |++|+.|+|.+|..... ..+.. .+ ++|++|.+.++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 4678999999999988874 35566788 99999999999864211 01111 11 68999999988
Q ss_pred CCCC--eEE------EECCceeEEEEcccccc---------cccCCCCCcceEEecccchhhh-hhhhhhhhccCCCceE
Q 013265 215 DNLK--DLQ------LHAPNLLSFEYSGPILP---------FSFRNVPNLVDASFWGCFSAYI-AKNLCQHSIFLVQLHT 276 (446)
Q Consensus 215 ~~l~--~~~------i~~p~L~~l~~~~~~~~---------~~~~~~~~L~~l~l~~~~~~~~-~~~l~~~l~~l~~l~~ 276 (446)
. +. .+. -..++|++|.+.++... ..+.++++|+.+++..+.+... ...+...+..+++|+.
T Consensus 170 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 170 R-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp C-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred C-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 6 43 111 14579999999887543 1566889999999987754321 2334467788999999
Q ss_pred EEEeecccccccchhcccccccCC--CCCCcccEEEEEecCCCC-CHHHHHHHH-hhCCCceEEEEEE
Q 013265 277 LKLDTCHLLIGDSEYRAGRYLHDI--PEMCNLKHLEIIGTPKVN-DLIFCIALL-EAAPSLYKFSLKL 340 (446)
Q Consensus 277 L~L~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~-~~~~l~~ll-~~~p~L~~L~l~~ 340 (446)
|.|+++.+.. .....++..+ ..+++|++|.|..+.-.. ....+...+ .++|+|+.|++..
T Consensus 249 L~L~~n~i~~----~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 249 LGLNDCLLSA----RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp EECTTCCCCH----HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred EECCCCCCch----hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 9999864421 1111122333 337899999999885222 122355555 6689999999954
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.35 E-value=4.1e-07 Score=84.93 Aligned_cols=195 Identities=19% Similarity=0.095 Sum_probs=104.4
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcc
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSG 234 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~ 234 (446)
++|+.|+|.+..++.-. ...+.. ++.|+.|.+.++... .+.....+++|+.|.++++. +..
T Consensus 31 ~~l~~L~L~~N~l~~~~-~~~~~~-l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~-l~~--------------- 91 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFS-LATLMP-YTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQ-LQS--------------- 91 (290)
T ss_dssp TTCCEEECTTSCCSEEE-GGGGTT-CTTCCEEECTTSCCC-EEECCSCCTTCCEEECCSSC-CSS---------------
T ss_pred CCCCEEEcCCCcCCccC-HHHhhc-CCCCCEEECCCCccC-cccCCCCCCcCCEEECCCCc-CCc---------------
Confidence 56777777766554321 122556 777777777765422 22111333455555555443 221
Q ss_pred cccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEec
Q 013265 235 PILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGT 314 (446)
Q Consensus 235 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 314 (446)
.+..+.++++|+.+++..+.+..... ..+..+++|+.|.+.++.+. ...+..+..+++|+.|.|..+
T Consensus 92 --l~~~~~~l~~L~~L~l~~N~l~~l~~---~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 92 --LPLLGQTLPALTVLDVSFNRLTSLPL---GALRGLGELQELYLKGNELK--------TLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp --CCCCTTTCTTCCEEECCSSCCCCCCS---STTTTCTTCCEEECTTSCCC--------CCCTTTTTTCTTCCEEECTTS
T ss_pred --CchhhccCCCCCEEECCCCcCcccCH---HHHcCCCCCCEEECCCCCCC--------ccChhhcccccCCCEEECCCC
Confidence 12234566777777776553322211 34566778888887774221 111223456678888888776
Q ss_pred CCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHh
Q 013265 315 PKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIF 392 (446)
Q Consensus 315 ~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~ 392 (446)
.-. .+. ..++...++|+.|++... .+..+|.... .+.+|+.+.+.| +...+.-..+..++-+
T Consensus 159 ~l~-~l~--~~~~~~l~~L~~L~L~~N---------~l~~ip~~~~----~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 159 NLT-ELP--AGLLNGLENLDTLLLQEN---------SLYTIPKGFF----GSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222 (290)
T ss_dssp CCS-CCC--TTTTTTCTTCCEEECCSS---------CCCCCCTTTT----TTCCCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred cCC-ccC--HHHhcCcCCCCEEECCCC---------cCCccChhhc----ccccCCeEEeCCCCccCcCccHHHHHHHHh
Confidence 411 110 123566788888888432 2223343322 236788888887 4445555667777766
Q ss_pred cCccc
Q 013265 393 SAKLL 397 (446)
Q Consensus 393 ~a~~L 397 (446)
+....
T Consensus 223 ~~~~~ 227 (290)
T 1p9a_G 223 NAENV 227 (290)
T ss_dssp TGGGB
T ss_pred Ccccc
Confidence 65433
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.34 E-value=2.7e-07 Score=89.92 Aligned_cols=101 Identities=21% Similarity=0.203 Sum_probs=58.4
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCc
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPN 226 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~ 226 (446)
..+++|++|+|.+..+++-.. ..+.. +++|++|++.++...... ..-..+++|++|.+.++. +..+.. ..++
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~-~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDT-YAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPK 142 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECT-TTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cccccCcEEECCCCcccccCh-hhccC-CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCC
Confidence 346777777777665543211 12456 777777777776533221 111234677777777765 443321 2467
Q ss_pred eeEEEEccccc----ccccCCCCCcceEEeccc
Q 013265 227 LLSFEYSGPIL----PFSFRNVPNLVDASFWGC 255 (446)
Q Consensus 227 L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~ 255 (446)
|++|++.++.. +..+.++++|+.+++..+
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence 77777776632 223566777777777655
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.33 E-value=3.2e-07 Score=91.22 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=28.9
Q ss_pred ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265 151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS 192 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~ 192 (446)
...+++|++|+|.++.+++.....++.+ +++|++|++.++.
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~ 165 (455)
T 3v47_A 125 FKPLTSLEMLVLRDNNIKKIQPASFFLN-MRRFHVLDLTFNK 165 (455)
T ss_dssp TTTCTTCCEEECCSSBCCSCCCCGGGGG-CTTCCEEECTTCC
T ss_pred ccCcccCCEEECCCCccCccCcccccCC-CCcccEEeCCCCc
Confidence 3457888888888877665433334667 8888888888765
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.33 E-value=2.3e-07 Score=87.11 Aligned_cols=219 Identities=14% Similarity=0.067 Sum_probs=140.9
Q ss_pred cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE---eCCcCccceEEeeccCCCCeEE---EECCce
Q 013265 154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV---SGPSLKLKHLKLNKLDNLKDLQ---LHAPNL 227 (446)
Q Consensus 154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i---~~~~~~L~~L~i~~~~~l~~~~---i~~p~L 227 (446)
.++|++|+|.+..+++- -...+.. +++|++|++.++.....-.+ ...+++|++|.++++. +..+. ...++|
T Consensus 27 ~~~l~~L~L~~n~l~~i-~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L 103 (306)
T 2z66_A 27 PSSATRLELESNKLQSL-PHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 103 (306)
T ss_dssp CTTCCEEECCSSCCCCC-CTTTTTT-CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred CCCCCEEECCCCccCcc-CHhHhhc-cccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence 36899999998877632 1234678 99999999998864321111 1134789999999986 54442 236999
Q ss_pred eEEEEccccc---c--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265 228 LSFEYSGPIL---P--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE 302 (446)
Q Consensus 228 ~~l~~~~~~~---~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
++|++.+... + ..+.++++|+.+++..+....... ..+..+++|+.|.+.++.+ .....+..+..
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~~ 173 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSF-------QENFLPDIFTE 173 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST---TTTTTCTTCCEEECTTCEE-------GGGEECSCCTT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch---hhcccCcCCCEEECCCCcc-------ccccchhHHhh
Confidence 9999988732 1 356788999999998764332222 5567889999999988432 11234566778
Q ss_pred CCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee--cC
Q 013265 303 MCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV--GH 380 (446)
Q Consensus 303 ~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~--g~ 380 (446)
+++|++|++..+.-... ....+..+|+|+.|++... .... .+.. .+..+.+|+++.+.+-. +.
T Consensus 174 l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N---~l~~------~~~~---~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQL---SPTAFNSLSSLQVLNMSHN---NFFS------LDTF---PYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTS---CCSB------CCSG---GGTTCTTCCEEECTTSCCCBC
T ss_pred CcCCCEEECCCCCcCCc---CHHHhcCCCCCCEEECCCC---ccCc------cChh---hccCcccCCEeECCCCCCccc
Confidence 89999999988741111 0123577899999999432 2111 1110 01124789999998643 22
Q ss_pred cchHHHHHHHHhcC-ccccceEEecCC
Q 013265 381 TADFELVMYLIFSA-KLLEKIIIDPCP 406 (446)
Q Consensus 381 ~~e~~~~~~ll~~a-~~Le~l~i~~~~ 406 (446)
..+ . +.+. +.|+.+.+....
T Consensus 239 ~~~-~-----~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 239 KKQ-E-----LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SSS-S-----CCCCCTTCCEEECTTCC
T ss_pred CHH-H-----HHhhhccCCEEEccCCC
Confidence 111 1 1334 488888887554
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.31 E-value=1.1e-06 Score=88.92 Aligned_cols=220 Identities=12% Similarity=0.136 Sum_probs=129.0
Q ss_pred cccccccceEEEEEEeChHHHHHHHhc-CCCCcceeeEeccCCCCce--eEe----CCcCc-------------------
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCY-CCPVLEVLNVAESSSLTSL--KVS----GPSLK------------------- 205 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~-~cp~Le~L~L~~c~~~~~~--~i~----~~~~~------------------- 205 (446)
..+++|+.|.+.++.+++..+..+... .+++|++|++.+|...+.+ .+. ..+++
T Consensus 217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~ 296 (520)
T 2z7x_B 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296 (520)
T ss_dssp GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHH
T ss_pred ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhh
Confidence 457788888888888887665554432 1678999999887532111 110 12233
Q ss_pred -------cceEEeeccCCCCeEE--EECCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCC
Q 013265 206 -------LKHLKLNKLDNLKDLQ--LHAPNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLV 272 (446)
Q Consensus 206 -------L~~L~i~~~~~l~~~~--i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~ 272 (446)
|+.|.+.++. +..+. -..++|++|+++++.. +..+.++++|+.+++..+..... ..+...+..++
T Consensus 297 ~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~~~l~ 374 (520)
T 2z7x_B 297 EIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-SKIAEMTTQMK 374 (520)
T ss_dssp HHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-HHHHHHHTTCT
T ss_pred cccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-ccchHHHhhCC
Confidence 4444454443 22222 2457788888877632 34556788888888876643311 12224567788
Q ss_pred CceEEEEeecccccccchhcccccc-cCCCCCCcccEEEEEecCCCCCHHHHHHHHhhC-CCceEEEEEEeccccccccc
Q 013265 273 QLHTLKLDTCHLLIGDSEYRAGRYL-HDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAA-PSLYKFSLKLVSQYDYESYE 350 (446)
Q Consensus 273 ~l~~L~L~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~-p~L~~L~l~~~~~~~~~~~~ 350 (446)
+|+.|+++++.+.. .++ ..+..+++|++|.+..+.-.... .... ++|+.|+++..
T Consensus 375 ~L~~L~Ls~N~l~~--------~l~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~l~~~L~~L~Ls~N--------- 431 (520)
T 2z7x_B 375 SLQQLDISQNSVSY--------DEKKGDCSWTKSLLSLNMSSNILTDTI------FRCLPPRIKVLDLHSN--------- 431 (520)
T ss_dssp TCCEEECCSSCCBC--------CGGGCSCCCCTTCCEEECCSSCCCGGG------GGSCCTTCCEEECCSS---------
T ss_pred CCCEEECCCCcCCc--------ccccchhccCccCCEEECcCCCCCcch------hhhhcccCCEEECCCC---------
Confidence 88888888753321 011 13456688888888877422211 1222 68888888432
Q ss_pred ccccccCCCCccccccCCCcEEEEEeee--cCcchHHHHHHHHhcCccccceEEecCC
Q 013265 351 SVKTIKDQPYLSFTELRSIRVVELLGFV--GHTADFELVMYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 351 ~~~~~p~c~~~~~~~l~~L~~v~i~~~~--g~~~e~~~~~~ll~~a~~Le~l~i~~~~ 406 (446)
.+..+|.... .+.+|+++.+.+.. +...+ .+.+.+.|+.+.+....
T Consensus 432 ~l~~ip~~~~----~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 432 KIKSIPKQVV----KLEALQELNVASNQLKSVPDG------IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCCCCCGGGG----GCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSSC
T ss_pred cccccchhhh----cCCCCCEEECCCCcCCccCHH------HhccCCcccEEECcCCC
Confidence 1222343221 45889999998743 22222 34678899999988654
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=8.3e-08 Score=102.61 Aligned_cols=13 Identities=8% Similarity=-0.054 Sum_probs=7.9
Q ss_pred ccCCCcEEEEEee
Q 013265 365 ELRSIRVVELLGF 377 (446)
Q Consensus 365 ~l~~L~~v~i~~~ 377 (446)
.+.+|+.+.+.+.
T Consensus 804 ~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 804 TCPSLIQLQIGSN 816 (876)
T ss_dssp GCSSCCEEECCSS
T ss_pred cCCCCCEEECCCC
Confidence 3466777766653
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.27 E-value=2.8e-07 Score=85.15 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=18.6
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS 192 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~ 192 (446)
.+++|++|+|.++.+++- . .+.. +++|++|++.+|.
T Consensus 61 ~l~~L~~L~l~~n~l~~~--~-~l~~-l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDI--S-ALKE-LTNLTYLILTGNQ 96 (272)
T ss_dssp GCTTCCEEECTTSCCCCC--G-GGTT-CTTCCEEECTTSC
T ss_pred cCCCCcEEECCCCCCCCc--h-hhcC-CCCCCEEECCCCc
Confidence 455566666655554431 1 2344 5566666665553
No 54
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.25 E-value=2e-06 Score=80.97 Aligned_cols=208 Identities=16% Similarity=0.082 Sum_probs=110.3
Q ss_pred cceEEEEEecCCcchHHHHHHHHHHcCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChH--HH
Q 013265 95 TEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGE--VL 172 (446)
Q Consensus 95 l~~l~l~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~--~l 172 (446)
++++.+.-.......+...........+++|.+...... -..|..++. ..+++|++|+|+++.+++. .+
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--------~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT--------GTMPPLPLE-ATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB--------SCCCCCSSS-CCCBCCSSCEEESCCCSSTTSSH
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec--------cchhhhhhh-ccCCCCCEEEeecccccchhhhh
Confidence 555555321111225555566655668999998654311 123333221 5789999999999998752 11
Q ss_pred H-HHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcccccccccCCCCCcceE
Q 013265 173 E-HLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDA 250 (446)
Q Consensus 173 ~-~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l 250 (446)
. .-+.. +++|++|++.++...... .....+++|++|.++++.-..... ......+.++++|+.+
T Consensus 137 ~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 137 AELQQWL-KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG-------------LMAALCPHKFPAIQNL 202 (310)
T ss_dssp HHHHTTB-CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH-------------HHTTSCTTSSCCCCSC
T ss_pred HHHHhhh-ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh-------------hhHHHhhhcCCCCCEE
Confidence 1 22447 999999999988653322 111233566666666654110000 0001123466777777
Q ss_pred EecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCC---CcccEEEEEecCCCCCHHHHHHHH
Q 013265 251 SFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEM---CNLKHLEIIGTPKVNDLIFCIALL 327 (446)
Q Consensus 251 ~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~L~L~~~~~~~~~~~l~~ll 327 (446)
++..+...........++..+++|+.|+++++.+.. ..+..+..+ ++|++|.|+.+.-. .++.
T Consensus 203 ~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~--------~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~----- 268 (310)
T 4glp_A 203 ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA--------TVNPSAPRCMWSSALNSLNLSFAGLE-QVPK----- 268 (310)
T ss_dssp BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC--------CCCSCCSSCCCCTTCCCEECCSSCCC-SCCS-----
T ss_pred ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc--------cchhhHHhccCcCcCCEEECCCCCCC-chhh-----
Confidence 776654321111111345677888888887743311 112222333 67888888776411 1110
Q ss_pred hhCCCceEEEEE
Q 013265 328 EAAPSLYKFSLK 339 (446)
Q Consensus 328 ~~~p~L~~L~l~ 339 (446)
.-+++|+.|++.
T Consensus 269 ~~~~~L~~L~Ls 280 (310)
T 4glp_A 269 GLPAKLRVLDLS 280 (310)
T ss_dssp CCCSCCSCEECC
T ss_pred hhcCCCCEEECC
Confidence 013677777774
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.25 E-value=1.5e-07 Score=97.23 Aligned_cols=83 Identities=16% Similarity=0.038 Sum_probs=42.6
Q ss_pred cCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCH
Q 013265 241 FRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDL 320 (446)
Q Consensus 241 ~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 320 (446)
+.++++|+.++++.+.+..... ..+..+++|+.|.|.++.+ ..++.....+++|+.|+|..+.-. .
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l---------~~l~~~~~~l~~L~~L~Ls~N~l~-~- 315 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMY---HPFVKMQRLERLYISNNRL---------VALNLYGQPIPTLKVLDLSHNHLL-H- 315 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEES---GGGTTCSSCCEEECTTSCC---------CEEECSSSCCTTCCEEECCSSCCC-C-
T ss_pred hccCCCCCEEECCCCccCCCCH---HHhcCccCCCEEECCCCCC---------CCCCcccccCCCCcEEECCCCCCC-c-
Confidence 4455566666665543222111 3345566666666665322 112333445677777777776421 1
Q ss_pred HHHHHHHhhCCCceEEEEE
Q 013265 321 IFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 321 ~~l~~ll~~~p~L~~L~l~ 339 (446)
+..-+..+|+|+.|++.
T Consensus 316 --i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 316 --VERNQPQFDRLENLYLD 332 (597)
T ss_dssp --CGGGHHHHTTCSEEECC
T ss_pred --cCcccccCCCCCEEECC
Confidence 11123556777777774
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.25 E-value=2.4e-07 Score=88.09 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=69.7
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE----ECCcee
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLL 228 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~ 228 (446)
++++|++|+|.++.+++-. ...+.. +++|++|++.++... .+..... ++|++|.+.++. +..+.. ..++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~Ls~n~l~-~l~~~~~-~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 74 NLKNLHTLILINNKISKIS-PGAFAP-LVKLERLYLSKNQLK-ELPEKMP-KTLQELRVHENE-ITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TCTTCCEEECCSSCCCCBC-TTTTTT-CTTCCEEECCSSCCS-BCCSSCC-TTCCEEECCSSC-CCBBCHHHHTTCTTCC
T ss_pred cCCCCCEEECCCCcCCeeC-HHHhcC-CCCCCEEECCCCcCC-ccChhhc-ccccEEECCCCc-ccccCHhHhcCCcccc
Confidence 4556666666655443210 112344 666666666555322 1110111 455555555553 222211 135555
Q ss_pred EEEEccccc------ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265 229 SFEYSGPIL------PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE 302 (446)
Q Consensus 229 ~l~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
.|++.+... +..+.++++|+.+++..+....... ...++|+.|++.++.+. ...+..+..
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~------~~~~~L~~L~l~~n~l~--------~~~~~~~~~ 214 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ------GLPPSLTELHLDGNKIT--------KVDAASLKG 214 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS------SCCTTCSEEECTTSCCC--------EECTGGGTT
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc------cccccCCEEECCCCcCC--------ccCHHHhcC
Confidence 555554422 1223445555555554432211100 01145555555542110 011223445
Q ss_pred CCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 303 MCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 303 ~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
+++|++|++..+.-.... ...+..+|+|+.|++.
T Consensus 215 l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVD---NGSLANTPHLRELHLN 248 (330)
T ss_dssp CTTCCEEECCSSCCCEEC---TTTGGGSTTCCEEECC
T ss_pred CCCCCEEECCCCcCceeC---hhhccCCCCCCEEECC
Confidence 566666666655311000 0123556666666663
No 57
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.24 E-value=7.8e-07 Score=86.60 Aligned_cols=168 Identities=14% Similarity=0.044 Sum_probs=87.7
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCC---------------
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDN--------------- 216 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~--------------- 216 (446)
..+++|++|+|.+..++... ...+.. +++|++|++.++.... +.+ ...++|+.|.+.++.-
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~l~~n~l~~-~~~-~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~ 213 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIE-DDTFQA-TTSLQNLQLSSNRLTH-VDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDAS 213 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCC-TTTTSS-CTTCCEEECCSSCCSB-CCG-GGCTTCSEEECCSSCCSEEECCSSCSEEECC
T ss_pred cCCCCCcEEECCCCccCccC-hhhccC-CCCCCEEECCCCcCCc-ccc-ccccccceeecccccccccCCCCcceEEECC
Confidence 45788888888877665321 123566 8888888888765322 111 1124455555544430
Q ss_pred ---CCeEEEE-CCceeEEEEccccc--ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccch
Q 013265 217 ---LKDLQLH-APNLLSFEYSGPIL--PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSE 290 (446)
Q Consensus 217 ---l~~~~i~-~p~L~~l~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~ 290 (446)
+..+... .++|+.|++.++.. ...+.++++|+++++..+....... ..+..+++|+.|.+.++.+.
T Consensus 214 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~----- 285 (390)
T 3o6n_A 214 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY---HPFVKMQRLERLYISNNRLV----- 285 (390)
T ss_dssp SSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES---GGGTTCSSCCEEECCSSCCC-----
T ss_pred CCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcCh---hHccccccCCEEECCCCcCc-----
Confidence 2222111 24566666555532 1234556667777666553322211 34456667777777663221
Q ss_pred hcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 291 YRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 291 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
.++.....+++|++|++..+.-. . +..-+..+|+|+.|++.
T Consensus 286 ----~~~~~~~~l~~L~~L~L~~n~l~-~---~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 286 ----ALNLYGQPIPTLKVLDLSHNHLL-H---VERNQPQFDRLENLYLD 326 (390)
T ss_dssp ----EEECSSSCCTTCCEEECCSSCCC-C---CGGGHHHHTTCSEEECC
T ss_pred ----ccCcccCCCCCCCEEECCCCcce-e---cCccccccCcCCEEECC
Confidence 12223345677777777766411 1 11123456777777774
No 58
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.23 E-value=3.5e-07 Score=88.19 Aligned_cols=178 Identities=12% Similarity=0.095 Sum_probs=84.8
Q ss_pred cccceEEEEEEeChH---HHHHHHhcCCC-CcceeeEeccCCCCc-e-eEe----CCcCccceEEeeccCCCCeEEE---
Q 013265 156 HLTDLSLTTVGITGE---VLEHLLCYCCP-VLEVLNVAESSSLTS-L-KVS----GPSLKLKHLKLNKLDNLKDLQL--- 222 (446)
Q Consensus 156 ~L~~L~L~~~~~~~~---~l~~ll~~~cp-~Le~L~L~~c~~~~~-~-~i~----~~~~~L~~L~i~~~~~l~~~~i--- 222 (446)
+|++|+|+++.+++. .+...+.. +| .|++|+|.+|..... . .+. ..+++|++|.+++|. +.....
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFAN-TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDEL 100 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHT-CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHh-CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHH
Confidence 466777766665543 23344556 66 677777766642211 0 111 111567777776665 332211
Q ss_pred -----EC-CceeEEEEccccccc--------ccCC-CCCcceEEecccchhh-hhhhhhhhhccCC-CceEEEEeecccc
Q 013265 223 -----HA-PNLLSFEYSGPILPF--------SFRN-VPNLVDASFWGCFSAY-IAKNLCQHSIFLV-QLHTLKLDTCHLL 285 (446)
Q Consensus 223 -----~~-p~L~~l~~~~~~~~~--------~~~~-~~~L~~l~l~~~~~~~-~~~~l~~~l~~l~-~l~~L~L~~~~~~ 285 (446)
.. ++|++|++.++.... .+.. ..+|++++++.+.+.. ....+...+..++ +|+.|+++++.+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 11 567777666653211 0122 2466777766553331 1122334444444 6777777664332
Q ss_pred cccchhcccccccCCCCC-CcccEEEEEecC-CCCCHHHHHHHHhh-CCCceEEEEE
Q 013265 286 IGDSEYRAGRYLHDIPEM-CNLKHLEIIGTP-KVNDLIFCIALLEA-APSLYKFSLK 339 (446)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~-~~~~~~~l~~ll~~-~p~L~~L~l~ 339 (446)
.. ....+...+..+ ++|++|+|+.+. .......+...+.. +++|++|++.
T Consensus 181 ~~----~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 181 SK----NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp GS----CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred hh----hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 11 001111122233 367777776664 22233345555555 4467777664
No 59
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.22 E-value=1.7e-06 Score=78.07 Aligned_cols=169 Identities=13% Similarity=0.022 Sum_probs=98.9
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee--EeCCcCccceEEeeccCCCCeEE----EECCcee
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK--VSGPSLKLKHLKLNKLDNLKDLQ----LHAPNLL 228 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~~~~l~~~~----i~~p~L~ 228 (446)
++|++|+|.+..++.-. ...+.+ +++|+.|++.++..++.+. ....+++|++|.+.+|..+..+. -..++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~-l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTT-CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CcccEEEEeCCcceEEC-HHHccC-CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 37888888887665321 113566 8888888888886443332 11234788888888744465543 2457888
Q ss_pred EEEEcccccc--cccCCCCCcc---eEEeccc-chhhhhhhhhhhhccCCCce-EEEEeecccccccchhcccccccCCC
Q 013265 229 SFEYSGPILP--FSFRNVPNLV---DASFWGC-FSAYIAKNLCQHSIFLVQLH-TLKLDTCHLLIGDSEYRAGRYLHDIP 301 (446)
Q Consensus 229 ~l~~~~~~~~--~~~~~~~~L~---~l~l~~~-~~~~~~~~l~~~l~~l~~l~-~L~L~~~~~~~~~~~~~~~~~~~~~~ 301 (446)
+|++.++... -.+.++++|+ .+++..+ ....... ..+..+++++ .|++.++.+. .++....
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~---~~~~~l~~L~~~L~l~~n~l~---------~i~~~~~ 176 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV---NAFQGLCNETLTLKLYNNGFT---------SVQGYAF 176 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT---TTTTTTBSSEEEEECCSCCCC---------EECTTTT
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCc---ccccchhcceeEEEcCCCCCc---------ccCHhhc
Confidence 8888776321 1155666676 7887665 3332222 3456788888 8888764221 1122211
Q ss_pred CCCcccEEEEEecCCCCCHHHHHHHHhhC-CCceEEEEE
Q 013265 302 EMCNLKHLEIIGTPKVNDLIFCIALLEAA-PSLYKFSLK 339 (446)
Q Consensus 302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~-p~L~~L~l~ 339 (446)
..++|++|.+..+.....+. ...+..+ ++|+.|++.
T Consensus 177 ~~~~L~~L~L~~n~~l~~i~--~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVID--KDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp TTCEEEEEECTTCTTCCEEC--TTTTTTCSBCCSEEECT
T ss_pred CCCCCCEEEcCCCCCcccCC--HHHhhccccCCcEEECC
Confidence 22678888887662111110 1234566 888888883
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.22 E-value=6.8e-06 Score=83.63 Aligned_cols=180 Identities=15% Similarity=0.124 Sum_probs=121.9
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCC--ceeEeCCcCccceEEeeccCCCCeEEE----ECC
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLT--SLKVSGPSLKLKHLKLNKLDNLKDLQL----HAP 225 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~--~~~i~~~~~~L~~L~i~~~~~l~~~~i----~~p 225 (446)
.++++|++|+|+++.+++.. ...+.+ +++|++|++.++.... .......+++|++|.+.++..+..+.. ..+
T Consensus 71 ~~l~~L~~L~Ls~n~l~~~~-~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 71 YSLGSLEHLDLSDNHLSSLS-SSWFGP-LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTCTTCCEEECTTSCCCSCC-HHHHTT-CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred cccccCCEEECCCCccCccC-HHHhcc-CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 47889999999998877532 234678 9999999999886432 122234558899999998864444421 258
Q ss_pred ceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265 226 NLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP 301 (446)
Q Consensus 226 ~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~ 301 (446)
+|+.|++.++.. +..+.++++|+.+++..+....... .+...+++++.|++.++.+... . ..-.....
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~L~~n~l~~~----~-~~~~~~~~ 220 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE---IFADILSSVRYLELRDTNLARF----Q-FSPLPVDE 220 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH---HHHHSTTTBSEEEEESCBCTTC----C-CCCCSSCC
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccch---hhHhhcccccEEEccCCccccc----c-ccccchhh
Confidence 899999887643 4467788899999997764433222 3456789999999998533210 0 00011223
Q ss_pred CCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 302 EMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 302 ~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
.+++|++|.+..+. .......+...+..+++|+.|++..+
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 57899999998874 22233456667788999999998654
No 61
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.22 E-value=8.5e-07 Score=84.21 Aligned_cols=121 Identities=14% Similarity=0.161 Sum_probs=53.6
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCc-e--eEeCCcCccceEEeeccCCCCeEEEE-CCceeEE
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTS-L--KVSGPSLKLKHLKLNKLDNLKDLQLH-APNLLSF 230 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~-~--~i~~~~~~L~~L~i~~~~~l~~~~i~-~p~L~~l 230 (446)
++|++|.+.+..++.. ....+.+ ++.|+.|++.++..... . .....+++|+.|.+.++. +..+... .++|++|
T Consensus 121 ~~L~~L~l~~n~l~~~-~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKV-RKSVFNG-LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBB-CHHHHTT-CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEE
T ss_pred ccccEEECCCCccccc-CHhHhcC-CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEE
Confidence 4566666655554432 1123455 66666666665543210 0 011123556666665554 2222111 1455555
Q ss_pred EEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265 231 EYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT 281 (446)
Q Consensus 231 ~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~ 281 (446)
++.++.. +..+.++++|+.+++..+....... ..+..+++|+.|++.+
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN---GSLANTPHLRELHLNN 249 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT---TTGGGSTTCCEEECCS
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh---hhccCCCCCCEEECCC
Confidence 5555422 2234455555555554432221111 2334455555555555
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.21 E-value=8.2e-07 Score=83.72 Aligned_cols=194 Identities=21% Similarity=0.155 Sum_probs=124.6
Q ss_pred HcCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChH--HHHHHHhcCCCCcceeeEeccCCCCc
Q 013265 119 ERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGE--VLEHLLCYCCPVLEVLNVAESSSLTS 196 (446)
Q Consensus 119 ~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~--~l~~ll~~~cp~Le~L~L~~c~~~~~ 196 (446)
-.++++|.+...... -.+|..++ ...+++|++|+|++..+++. .+..+....+++|++|++.++.....
T Consensus 94 l~~L~~L~L~~n~l~--------~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 94 ISGLQELTLENLEVT--------GTAPPPLL-EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp TSCCCEEEEEEEBCB--------SCCCCCSS-SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred cCCccEEEccCCccc--------chhHHHHH-HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence 458999998765421 13454433 35789999999999988754 33332211139999999999875433
Q ss_pred e-eEeCCcCccceEEeeccCCCCe------EE-EECCceeEEEEcccccc-------cccCCCCCcceEEecccchhhhh
Q 013265 197 L-KVSGPSLKLKHLKLNKLDNLKD------LQ-LHAPNLLSFEYSGPILP-------FSFRNVPNLVDASFWGCFSAYIA 261 (446)
Q Consensus 197 ~-~i~~~~~~L~~L~i~~~~~l~~------~~-i~~p~L~~l~~~~~~~~-------~~~~~~~~L~~l~l~~~~~~~~~ 261 (446)
. ..-..+++|++|.++++.-... +. -..++|++|++.++... ..+.++++|+.++++.+......
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 2 1222458999999998872211 11 24589999999988543 12346789999999876433211
Q ss_pred hhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 262 KNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 262 ~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
. ......+++|+.|.++.+.+. .++..++ ++|++|+++.+.-... + . +..+|+|+.|++.
T Consensus 245 ~--~~~~~~l~~L~~L~Ls~N~l~---------~ip~~~~--~~L~~L~Ls~N~l~~~-p---~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 245 G--APSCDWPSQLNSLNLSFTGLK---------QVPKGLP--AKLSVLDLSYNRLDRN-P---S-PDELPQVGNLSLK 304 (312)
T ss_dssp C--CSCCCCCTTCCEEECTTSCCS---------SCCSSCC--SEEEEEECCSSCCCSC-C---C-TTTSCEEEEEECT
T ss_pred c--hhhhhhcCCCCEEECCCCccC---------hhhhhcc--CCceEEECCCCCCCCC-h---h-HhhCCCCCEEecc
Confidence 0 023455789999999985331 2233333 7999999988852111 1 1 5678889988884
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.20 E-value=5.6e-07 Score=83.07 Aligned_cols=169 Identities=16% Similarity=0.080 Sum_probs=110.5
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE----ECCcee
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLL 228 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~ 228 (446)
.+++|+.|.+.+..+++- . -+.. +|+|+.|++.++.... +.....+++|++|.+.++. +..+.. ..++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~-~l~~-l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--Q-GIQY-LPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--T-TGGG-CTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCCcccc--c-cccc-CCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCC
Confidence 567788888877666532 1 1567 9999999998876433 2222345789999998876 444331 348899
Q ss_pred EEEEcccccc----cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCC
Q 013265 229 SFEYSGPILP----FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC 304 (446)
Q Consensus 229 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (446)
+|++.++... ..+.++++|+.+++..+.+..... ..+..+++|+.|++..+.+. ...+..+..++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~ 181 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK---GVFDKLTNLTELDLSYNQLQ--------SLPEGVFDKLT 181 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCT
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH---HHhccCccCCEEECCCCCcC--------ccCHHHhcCCc
Confidence 9998877432 235678889999987764432222 44677889999999885331 11123356778
Q ss_pred cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
+|++|.+..+.-.... ...+..+++|+.|++...
T Consensus 182 ~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVP---DGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred cCCEEECCCCcCCccC---HHHHhCCcCCCEEEccCC
Confidence 9999999887421111 134577899999988654
No 64
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.20 E-value=1.4e-06 Score=90.56 Aligned_cols=193 Identities=11% Similarity=0.055 Sum_probs=121.5
Q ss_pred cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEE-eCh-H---HHHHH--HhcCCCCcceeeEeccC
Q 013265 120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVG-ITG-E---VLEHL--LCYCCPVLEVLNVAESS 192 (446)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~-~~~-~---~l~~l--l~~~cp~Le~L~L~~c~ 192 (446)
.++++|.+..... .-.+|.. ..++++|++|+|.++. +++ . .+..+ +.. +++|++|++.+|.
T Consensus 249 ~~L~~L~L~~n~l--------~~~~p~~---l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~-l~~L~~L~L~~n~ 316 (636)
T 4eco_A 249 KDLTDVEVYNCPN--------LTKLPTF---LKALPEMQLINVACNRGISGEQLKDDWQALADAPV-GEKIQIIYIGYNN 316 (636)
T ss_dssp TTCCEEEEECCTT--------CSSCCTT---TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG-GGTCCEEECCSSC
T ss_pred CCCCEEEecCCcC--------CccChHH---HhcCCCCCEEECcCCCCCccccchHHHHhhhcccc-CCCCCEEECCCCc
Confidence 4788888865421 1234533 3578999999999997 776 2 23332 234 6999999999987
Q ss_pred CCCcee--EeCCcCccceEEeeccCCCC-eEE--EECCceeEEEEcccc---cccccCCCCC-cceEEecccchhhhhhh
Q 013265 193 SLTSLK--VSGPSLKLKHLKLNKLDNLK-DLQ--LHAPNLLSFEYSGPI---LPFSFRNVPN-LVDASFWGCFSAYIAKN 263 (446)
Q Consensus 193 ~~~~~~--i~~~~~~L~~L~i~~~~~l~-~~~--i~~p~L~~l~~~~~~---~~~~~~~~~~-L~~l~l~~~~~~~~~~~ 263 (446)
...... .-..+++|+.|.+.++. +. .+. -..++|+.|++.++. .+..+.++++ |+.+++..+... ..+
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp- 393 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIP- 393 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCC-
T ss_pred CCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccc-
Confidence 653222 23355789999999886 33 322 234789999888773 3445667788 999999776433 111
Q ss_pred hhhhhcc--CCCceEEEEeecccccccchhcccccccCCC-------CCCcccEEEEEecCCCCCHHHHHHHHhhCCCce
Q 013265 264 LCQHSIF--LVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP-------EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLY 334 (446)
Q Consensus 264 l~~~l~~--l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~ 334 (446)
..+.. +++|+.|++..+.+. ...+..++ ..++|++|.+..+.-. .+ -..++..+++|+
T Consensus 394 --~~~~~~~l~~L~~L~Ls~N~l~--------~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~l--p~~~~~~l~~L~ 460 (636)
T 4eco_A 394 --NIFDAKSVSVMSAIDFSYNEIG--------SVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KF--PKELFSTGSPLS 460 (636)
T ss_dssp --SCCCTTCSSCEEEEECCSSCTT--------TTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SC--CTHHHHTTCCCS
T ss_pred --hhhhhcccCccCEEECcCCcCC--------CcchhhhcccccccccCCCCCEEECcCCccC-cC--CHHHHccCCCCC
Confidence 33333 347899998874331 11122333 5568888888887522 11 123456788899
Q ss_pred EEEEEE
Q 013265 335 KFSLKL 340 (446)
Q Consensus 335 ~L~l~~ 340 (446)
.|++..
T Consensus 461 ~L~Ls~ 466 (636)
T 4eco_A 461 SINLMG 466 (636)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 888854
No 65
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.20 E-value=1.2e-06 Score=82.76 Aligned_cols=191 Identities=14% Similarity=0.059 Sum_probs=125.7
Q ss_pred cCCcEEEEee-eccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-
Q 013265 120 RRVRRLELDF-SRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL- 197 (446)
Q Consensus 120 ~~l~~L~l~~-~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~- 197 (446)
+.++.|.+.. ... .-.+|.. ...+++|++|+|.+..+++. +...+.. +++|++|++.++...+.+
T Consensus 76 ~~L~~L~L~~~n~l--------~~~~p~~---l~~l~~L~~L~Ls~n~l~~~-~p~~~~~-l~~L~~L~Ls~N~l~~~~p 142 (313)
T 1ogq_A 76 PYLNFLYIGGINNL--------VGPIPPA---IAKLTQLHYLYITHTNVSGA-IPDFLSQ-IKTLVTLDFSYNALSGTLP 142 (313)
T ss_dssp TTCSEEEEEEETTE--------ESCCCGG---GGGCTTCSEEEEEEECCEEE-CCGGGGG-CTTCCEEECCSSEEESCCC
T ss_pred CCCCeeeCCCCCcc--------cccCChh---HhcCCCCCEEECcCCeeCCc-CCHHHhC-CCCCCEEeCCCCccCCcCC
Confidence 4788888862 221 1134433 35789999999999887632 2223677 999999999988644222
Q ss_pred eEeCCcCccceEEeeccCCCCeEEE----ECC-ceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhh
Q 013265 198 KVSGPSLKLKHLKLNKLDNLKDLQL----HAP-NLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHS 268 (446)
Q Consensus 198 ~i~~~~~~L~~L~i~~~~~l~~~~i----~~p-~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l 268 (446)
.....+++|++|.+.++. +..... ..+ +|+.|++.+... +..+..++ |+.+++..+....... ..+
T Consensus 143 ~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~---~~~ 217 (313)
T 1ogq_A 143 PSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS---VLF 217 (313)
T ss_dssp GGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG---GGC
T ss_pred hHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC---HHH
Confidence 112244789999999886 432211 223 899999887632 34455665 9999998764432222 567
Q ss_pred ccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265 269 IFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL 340 (446)
Q Consensus 269 ~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 340 (446)
..+++|+.|.+..+.+. .....+..+++|++|++..+.-... +...+..+++|+.|++..
T Consensus 218 ~~l~~L~~L~L~~N~l~---------~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLA---------FDLGKVGLSKNLNGLDLRNNRIYGT---LPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CTTSCCSEEECCSSEEC---------CBGGGCCCCTTCCEEECCSSCCEEC---CCGGGGGCTTCCEEECCS
T ss_pred hcCCCCCEEECCCCcee---------eecCcccccCCCCEEECcCCcccCc---CChHHhcCcCCCEEECcC
Confidence 78999999999985432 1112255679999999998852211 123467899999999954
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.19 E-value=5e-07 Score=83.29 Aligned_cols=194 Identities=14% Similarity=0.096 Sum_probs=93.5
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEEECCceeEEEEc
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYS 233 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~ 233 (446)
++|++|+|++..++.-. ...+.. +++|++|++.++...... .+...+++|++|.+.++. +..+.
T Consensus 37 ~~l~~L~l~~n~l~~~~-~~~~~~-l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~------------ 101 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLP-SKAFHR-LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALP------------ 101 (270)
T ss_dssp TTCSEEECCSSCCSCCC-TTSSSS-CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCC------------
T ss_pred CCCCEEECcCCCCCeeC-HHHhcC-CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCC------------
Confidence 56777777776655321 112456 777777777766432111 011123455666555543 22111
Q ss_pred ccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEe
Q 013265 234 GPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIG 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 313 (446)
+..+.++++|+.+++..+.+..... ..+..+++|+.|++.++.+. ......+..+++|++|.+..
T Consensus 102 ----~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 102 ----IGVFDQLVNLAELRLDRNQLKSLPP---RVFDSLTKLTYLSLGYNELQ--------SLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp ----TTTTTTCSSCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCS
T ss_pred ----HhHcccccCCCEEECCCCccCeeCH---HHhCcCcCCCEEECCCCcCC--------ccCHhHccCCcccceeEecC
Confidence 1123455666666665443222111 33456677777777763221 01112245567777777766
Q ss_pred cCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eecCcc-hHHHHHHH
Q 013265 314 TPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTA-DFELVMYL 390 (446)
Q Consensus 314 ~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~-e~~~~~~l 390 (446)
+.-..-. ...+..+++|+.|++... . +..+|.. .+..+.+|+.+.+.+ +..+.. -..+.+.+
T Consensus 167 n~l~~~~---~~~~~~l~~L~~L~L~~N---~------l~~~~~~---~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l 231 (270)
T 2o6q_A 167 NQLKRVP---EGAFDKLTELKTLKLDNN---Q------LKRVPEG---AFDSLEKLKMLQLQENPWDCTCNGIIYMAKWL 231 (270)
T ss_dssp SCCSCCC---TTTTTTCTTCCEEECCSS---C------CSCCCTT---TTTTCTTCCEEECCSSCBCCSSSSSHHHHHHH
T ss_pred CcCcEeC---hhHhccCCCcCEEECCCC---c------CCcCCHH---HhccccCCCEEEecCCCeeCCCccHHHHHHHH
Confidence 6311100 012456777887777432 1 1112211 011236777777776 333333 23445555
Q ss_pred Hhc
Q 013265 391 IFS 393 (446)
Q Consensus 391 l~~ 393 (446)
.++
T Consensus 232 ~~~ 234 (270)
T 2o6q_A 232 KKK 234 (270)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.18 E-value=1.4e-06 Score=86.63 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=16.6
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS 192 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~ 192 (446)
++++|++|+|.+..++.- ....+.. +++|++|++.++.
T Consensus 121 ~l~~L~~L~L~~n~l~~~-~~~~~~~-l~~L~~L~L~~N~ 158 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVI-PSGAFEY-LSKLRELWLRNNP 158 (452)
T ss_dssp TCTTCCEEECCSSCCSBC-CTTTSSS-CTTCCEEECCSCC
T ss_pred CcccCCEEECCCCcCCcc-Chhhhcc-cCCCCEEECCCCC
Confidence 345555555555443321 0112334 5555555555443
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.18 E-value=9.2e-07 Score=91.23 Aligned_cols=102 Identities=21% Similarity=0.194 Sum_probs=68.2
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCc
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPN 226 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~ 226 (446)
.++++|++|+|.++.+++-. ...+.. +++|+.|+|.++...... .....+++|+.|.++++. +..+.. ..++
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEID-TYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPK 148 (597)
T ss_dssp HHCCCCSEEECTTSCCCEEC-TTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred ccCCCCcEEECCCCCCCCCC-hHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCC
Confidence 45788888888887665421 113567 888999999887643322 122345788889888876 544431 3578
Q ss_pred eeEEEEccccc----ccccCCCCCcceEEecccc
Q 013265 227 LLSFEYSGPIL----PFSFRNVPNLVDASFWGCF 256 (446)
Q Consensus 227 L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~ 256 (446)
|++|++.++.. +..+.++++|+.+++..+.
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 88998887743 2346778889999887653
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.15 E-value=2.7e-06 Score=87.78 Aligned_cols=209 Identities=13% Similarity=0.021 Sum_probs=102.5
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY 232 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~ 232 (446)
.+++|++|+|+++.++. +. .. +++|+.|++.++....... ..++|+.|.+.++. +..+....++|++|++
T Consensus 79 ~l~~L~~L~Ls~N~l~~--lp---~~-l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~L 148 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS--LP---VL-PPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSV 148 (622)
T ss_dssp CCTTCCEEEECSCCCSC--CC---CC-CTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEEC
T ss_pred cCCCCCEEEcCCCcCCc--CC---CC-CCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCCCCCCCEEEC
Confidence 35677777777776653 11 15 7777777777664322111 23567777776664 4444334466777766
Q ss_pred cccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchh--------cccccccCCCCCC
Q 013265 233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEY--------RAGRYLHDIPEMC 304 (446)
Q Consensus 233 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~--------~~~~~~~~~~~~~ 304 (446)
.++.........++|+.+++..+.+. .+...+++|+.|+++++.+..-.... ....+......++
T Consensus 149 s~N~l~~l~~~~~~L~~L~L~~N~l~-------~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~ 221 (622)
T 3g06_A 149 SDNQLASLPALPSELCKLWAYNNQLT-------SLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPS 221 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCS-------CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCT
T ss_pred cCCcCCCcCCccCCCCEEECCCCCCC-------CCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCC
Confidence 66543221123345555555443211 11133455555555553221000000 0000000111235
Q ss_pred cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchH
Q 013265 305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADF 384 (446)
Q Consensus 305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~ 384 (446)
+|+.|.++.+.-. .++ ..+++|+.|+++.+ .+..+|.. +.+|+++.+.+..-. .+
T Consensus 222 ~L~~L~Ls~N~L~-~lp------~~l~~L~~L~Ls~N---------~L~~lp~~-------~~~L~~L~Ls~N~L~--~l 276 (622)
T 3g06_A 222 GLKELIVSGNRLT-SLP------VLPSELKELMVSGN---------RLTSLPML-------PSGLLSLSVYRNQLT--RL 276 (622)
T ss_dssp TCCEEECCSSCCS-CCC------CCCTTCCEEECCSS---------CCSCCCCC-------CTTCCEEECCSSCCC--SC
T ss_pred CCCEEEccCCccC-cCC------CCCCcCcEEECCCC---------CCCcCCcc-------cccCcEEeCCCCCCC--cC
Confidence 6666666655311 111 34566777666321 22233442 277999888774322 11
Q ss_pred HHHHHHHhcCccccceEEecCC
Q 013265 385 ELVMYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 385 ~~~~~ll~~a~~Le~l~i~~~~ 406 (446)
. . -+.+.+.|+.+.+..+.
T Consensus 277 p--~-~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 277 P--E-SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp C--G-GGGGSCTTCEEECCSCC
T ss_pred C--H-HHhhccccCEEEecCCC
Confidence 0 1 13678999999988764
No 70
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=8.1e-07 Score=85.40 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=50.6
Q ss_pred ccccccccceEEEEEEeC--------hHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCe---
Q 013265 151 YSSFRHLTDLSLTTVGIT--------GEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKD--- 219 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~~~--------~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~--- 219 (446)
...+++|+.|.+..+... ..++..++.. +|+|++|.|.++.+.....+. +++|++|.+..|. +..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~-~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~-l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA-MPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGG-LPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT-CTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSB-CCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhc-CCCCcEEEEeCCCCceecccc--CCCCcEEEEecCC-CChHHH
Confidence 346899999998765432 1247788899 999999999988543322222 3678888887664 221
Q ss_pred --EE-EECCceeEEEE
Q 013265 220 --LQ-LHAPNLLSFEY 232 (446)
Q Consensus 220 --~~-i~~p~L~~l~~ 232 (446)
+. ...|+|++|++
T Consensus 211 ~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVL 226 (362)
T ss_dssp HHHHHSBCTTCCEEEE
T ss_pred HHHHHccCCCCcEEEE
Confidence 11 13466666665
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.15 E-value=4.9e-06 Score=85.82 Aligned_cols=179 Identities=16% Similarity=0.045 Sum_probs=96.3
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEEC--------
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHA-------- 224 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~-------- 224 (446)
.+++|++|+|+++.++.- -.. .++|+.|.+.++.... +....++|++|.++++. +..+.-..
T Consensus 99 ~l~~L~~L~Ls~N~l~~l-----~~~-l~~L~~L~L~~N~l~~---lp~~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L 168 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHL-----PAL-PSGLCKLWIFGNQLTS---LPVLPPGLQELSVSDNQ-LASLPALPSELCKLWA 168 (622)
T ss_dssp CCTTCCEEEECSCCCCCC-----CCC-CTTCCEEECCSSCCSC---CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEEC
T ss_pred CCCCCCEEECcCCcCCCC-----CCC-CCCcCEEECCCCCCCc---CCCCCCCCCEEECcCCc-CCCcCCccCCCCEEEC
Confidence 567777777777665531 114 6667777766654222 11122556666666553 33322222
Q ss_pred ------------CceeEEEEcccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhc
Q 013265 225 ------------PNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYR 292 (446)
Q Consensus 225 ------------p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~ 292 (446)
++|+.|+++++.........++|+.+++..+.+. .+...+++|+.|.++++.+.
T Consensus 169 ~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-------~l~~~~~~L~~L~Ls~N~L~------- 234 (622)
T 3g06_A 169 YNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-------SLPALPSGLKELIVSGNRLT------- 234 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-------SCCCCCTTCCEEECCSSCCS-------
T ss_pred CCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCccc-------ccCCCCCCCCEEEccCCccC-------
Confidence 4555555554432211123345555555443221 22234467888887774221
Q ss_pred ccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEE
Q 013265 293 AGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVV 372 (446)
Q Consensus 293 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v 372 (446)
.++ ..+++|+.|+|+.+.- ..++. .+++|+.|++..+ .+..+|..+ ..+.+|+.+
T Consensus 235 --~lp---~~l~~L~~L~Ls~N~L-~~lp~------~~~~L~~L~Ls~N---------~L~~lp~~l----~~l~~L~~L 289 (622)
T 3g06_A 235 --SLP---VLPSELKELMVSGNRL-TSLPM------LPSGLLSLSVYRN---------QLTRLPESL----IHLSSETTV 289 (622)
T ss_dssp --CCC---CCCTTCCEEECCSSCC-SCCCC------CCTTCCEEECCSS---------CCCSCCGGG----GGSCTTCEE
T ss_pred --cCC---CCCCcCcEEECCCCCC-CcCCc------ccccCcEEeCCCC---------CCCcCCHHH----hhccccCEE
Confidence 112 4568999999998841 12211 5789999998432 222334332 245889999
Q ss_pred EEEeeecC
Q 013265 373 ELLGFVGH 380 (446)
Q Consensus 373 ~i~~~~g~ 380 (446)
.+.+-.-.
T Consensus 290 ~L~~N~l~ 297 (622)
T 3g06_A 290 NLEGNPLS 297 (622)
T ss_dssp ECCSCCCC
T ss_pred EecCCCCC
Confidence 99875433
No 72
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.13 E-value=2.8e-07 Score=87.67 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=44.4
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE----EECCce
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ----LHAPNL 227 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~----i~~p~L 227 (446)
.++++|++|+|.++.++.-. ...+.. +++|++|++.++.... +..... ++|++|.+.++. +..+. -..++|
T Consensus 75 ~~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~L~~n~l~~-l~~~~~-~~L~~L~l~~n~-i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 75 KGLQHLYALVLVNNKISKIH-EKAFSP-LRKLQKLYISKNHLVE-IPPNLP-SSLVELRIHDNR-IRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTCTTCCEEECCSSCCCEEC-GGGSTT-CTTCCEEECCSSCCCS-CCSSCC-TTCCEEECCSSC-CCCCCSGGGSSCSSC
T ss_pred hCCCCCcEEECCCCccCccC-HhHhhC-cCCCCEEECCCCcCCc-cCcccc-ccCCEEECCCCc-cCccCHhHhCCCccC
Confidence 45677777777776655321 122556 7777777777664331 111111 567777777665 33332 124677
Q ss_pred eEEEEccc
Q 013265 228 LSFEYSGP 235 (446)
Q Consensus 228 ~~l~~~~~ 235 (446)
++|++.+.
T Consensus 150 ~~L~l~~n 157 (332)
T 2ft3_A 150 NCIEMGGN 157 (332)
T ss_dssp CEEECCSC
T ss_pred CEEECCCC
Confidence 77776665
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.13 E-value=2e-05 Score=80.46 Aligned_cols=257 Identities=13% Similarity=0.087 Sum_probs=147.0
Q ss_pred CcceEEEEEecCCcchHHHHHHHHHHcCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeC-----
Q 013265 94 CTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGIT----- 168 (446)
Q Consensus 94 ~l~~l~l~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~----- 168 (446)
.++.+.+.........+..+........+++|.+...... -.+|..+|.. ..++|+.|.+.++...
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~--------~~ip~~~~~~-~~~~L~~L~~~~~~~~~~~~p 320 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT--------ERIDREEFTY-SETALKSLMIEHVKNQVFLFS 320 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC--------SCCCCCCCCC-CSCSCCEEEEEEEEECCCSSC
T ss_pred cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee--------ccccchhhhc-ccccchheehhhcccceeecC
Confidence 3555655432222223334444333347777777554311 1355544332 1355666666555433
Q ss_pred hHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeE----EEECCceeEEEEcccccc------
Q 013265 169 GEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDL----QLHAPNLLSFEYSGPILP------ 238 (446)
Q Consensus 169 ~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~----~i~~p~L~~l~~~~~~~~------ 238 (446)
++.+..++ . .+.|++|.+.++.... ......+++|++|.+.++. +... .-..++|+.|++.+....
T Consensus 321 ~~~~~~~~-~-~~~L~~L~l~~n~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 396 (562)
T 3a79_B 321 KEALYSVF-A-EMNIKMLSISDTPFIH-MVCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396 (562)
T ss_dssp HHHHHHHH-H-TCCCSEEEEESSCCCC-CCCCSSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH
T ss_pred hhhhhhhh-c-cCcceEEEccCCCccc-ccCccCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCCcCCcccch
Confidence 23444433 3 4689999999886432 2222445789999998876 3321 124588999988876432
Q ss_pred cccCCCCCcceEEecccchhh-hhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCC
Q 013265 239 FSFRNVPNLVDASFWGCFSAY-IAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKV 317 (446)
Q Consensus 239 ~~~~~~~~L~~l~l~~~~~~~-~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 317 (446)
..+.++++|+.+++..+.... ... ..+..+++++.|.++++.+. ...+..++ ++|+.|++..+.-.
T Consensus 397 ~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~l~~L~~L~l~~n~l~--------~~~~~~l~--~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 397 LMTKNMSSLETLDVSLNSLNSHAYD---RTCAWAESILVLNLSSNMLT--------GSVFRCLP--PKVKVLDLHNNRIM 463 (562)
T ss_dssp HTTTTCTTCCEEECTTSCCBSCCSS---CCCCCCTTCCEEECCSSCCC--------GGGGSSCC--TTCSEEECCSSCCC
T ss_pred hhhcCCCCCCEEECCCCcCCCccCh---hhhcCcccCCEEECCCCCCC--------cchhhhhc--CcCCEEECCCCcCc
Confidence 346788999999997764332 111 34567789999999885331 11122222 68999999887411
Q ss_pred CCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHh
Q 013265 318 NDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIF 392 (446)
Q Consensus 318 ~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~ 392 (446)
. +..-+..+++|+.|++... .+..+|.. .+..+.+|+.+.+.+ +.++.....++...+.
T Consensus 464 -~---ip~~~~~l~~L~~L~L~~N---------~l~~l~~~---~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~ 524 (562)
T 3a79_B 464 -S---IPKDVTHLQALQELNVASN---------QLKSVPDG---VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 524 (562)
T ss_dssp -C---CCTTTTSSCCCSEEECCSS---------CCCCCCTT---STTTCTTCCCEECCSCCBCCCHHHHHHHHHHHH
T ss_pred -c---cChhhcCCCCCCEEECCCC---------CCCCCCHH---HHhcCCCCCEEEecCCCcCCCcchHHHHHHHHH
Confidence 1 1111337899999998432 22233432 011347899999987 5566665666664443
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.11 E-value=1.9e-06 Score=90.14 Aligned_cols=221 Identities=16% Similarity=0.091 Sum_probs=115.9
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce--eEeCCcCccceEEeeccCCCCeEE----EECCcee
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLDNLKDLQ----LHAPNLL 228 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~~l~~~~----i~~p~L~ 228 (446)
+.|+.|+|.++.+++.. ...+.. +++|+.|++.++...+.+ .....+++|+.|.++++. +..+. ...|+|+
T Consensus 381 ~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIE-SDAFSW-LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQ 457 (680)
T ss_dssp SCCCEEECTTSCCCEEC-TTTTTT-CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCC
T ss_pred CcCceEECCCCCCCeEC-hhhhhC-CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccc
Confidence 35555555554443211 122455 777777777766543221 111234667777777665 22111 1247777
Q ss_pred EEEEcccc------cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhccccc----cc
Q 013265 229 SFEYSGPI------LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRY----LH 298 (446)
Q Consensus 229 ~l~~~~~~------~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~----~~ 298 (446)
.|.+.++. .+..+.++++|+.+++..+....... ..+..+++|+.|+++++.+.. ...... ..
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~~~~~ 530 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND---DMLEGLEKLEILDLQHNNLAR----LWKHANPGGPIY 530 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCGG----GGSTTSTTSCCC
T ss_pred cchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh---hhhccccccCEEeCCCCCccc----cchhhccCCcch
Confidence 77776652 23446677788888886654332222 445677888888887753321 000011 11
Q ss_pred CCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee
Q 013265 299 DIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV 378 (446)
Q Consensus 299 ~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~ 378 (446)
.+..+++|+.|+|..+.-. .+. ...+..+++|+.|++... .+..+|.. .|..+.+|+.+.+.+-.
T Consensus 531 ~~~~l~~L~~L~L~~N~l~-~i~--~~~~~~l~~L~~L~Ls~N---------~l~~l~~~---~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 531 FLKGLSHLHILNLESNGFD-EIP--VEVFKDLFELKIIDLGLN---------NLNTLPAS---VFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCC--TTTTTTCTTCCEEECCSS---------CCCCCCTT---TTTTCTTCCEEECTTSC
T ss_pred hhcCCCCCCEEECCCCCCC-CCC--HHHcccccCcceeECCCC---------CCCcCCHh---HhCCCCCCCEEECCCCc
Confidence 2456778888888776411 110 113567888888888322 12222321 11234778888887642
Q ss_pred --cCcchHHHHHHHHhcCccccceEEecC
Q 013265 379 --GHTADFELVMYLIFSAKLLEKIIIDPC 405 (446)
Q Consensus 379 --g~~~e~~~~~~ll~~a~~Le~l~i~~~ 405 (446)
+.... .+. ...+.|+.+.+...
T Consensus 596 l~~~~~~-~~~----~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 596 ITSVEKK-VFG----PAFRNLTELDMRFN 619 (680)
T ss_dssp CCBCCHH-HHH----HHHTTCSEEECTTC
T ss_pred CCccChh-Hhc----ccccccCEEEccCC
Confidence 32221 111 13467787777654
No 75
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=3e-06 Score=90.64 Aligned_cols=196 Identities=10% Similarity=0.049 Sum_probs=119.3
Q ss_pred cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEE-eCh----HHHHHHH---hcCCCCcceeeEecc
Q 013265 120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVG-ITG----EVLEHLL---CYCCPVLEVLNVAES 191 (446)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~-~~~----~~l~~ll---~~~cp~Le~L~L~~c 191 (446)
.+++.|.+..... .-.+|.. ..++++|+.|+|.++. +++ ..+..+- .. +|+|+.|++.++
T Consensus 491 ~~L~~L~Ls~N~l--------~~~iP~~---l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~-l~~L~~L~Ls~N 558 (876)
T 4ecn_A 491 KDLTDVELYNCPN--------MTQLPDF---LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT-GPKIQIFYMGYN 558 (876)
T ss_dssp TTCCEEEEESCTT--------CCSCCGG---GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTT-TTTCCEEECCSS
T ss_pred CCCCEEECcCCCC--------CccChHH---HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccc-cCCccEEEeeCC
Confidence 4788888855421 1234533 3578999999999987 776 2333322 45 779999999988
Q ss_pred CCCCcee--EeCCcCccceEEeeccCCCCeEE-E-ECCceeEEEEccccc---ccccCCCCC-cceEEecccchhhhhhh
Q 013265 192 SSLTSLK--VSGPSLKLKHLKLNKLDNLKDLQ-L-HAPNLLSFEYSGPIL---PFSFRNVPN-LVDASFWGCFSAYIAKN 263 (446)
Q Consensus 192 ~~~~~~~--i~~~~~~L~~L~i~~~~~l~~~~-i-~~p~L~~l~~~~~~~---~~~~~~~~~-L~~l~l~~~~~~~~~~~ 263 (446)
....... .-..+++|+.|.++++. +..+. + ..++|+.|++.++.. +-.+.++++ |+.+++..+.+. .
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~--- 633 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-Y--- 633 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-S---
T ss_pred cCCccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-c---
Confidence 7652222 23345789999998886 44332 1 247899999887743 334667777 999999776433 1
Q ss_pred hhhhhccCC--CceEEEEeecccccccchhcccccccCCC--CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 264 LCQHSIFLV--QLHTLKLDTCHLLIGDSEYRAGRYLHDIP--EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 264 l~~~l~~l~--~l~~L~L~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
+...+...+ +|+.|.++.+.+.-. ...++.... ..++|+.|+|..+.-. .++ ..++..+++|+.|++.
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~-----ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp--~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSE-----GRNISCSMDDYKGINASTVTLSYNEIQ-KFP--TELFATGSPISTIILS 705 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTT-----SSSCSSCTTTCCCCCEEEEECCSSCCC-SCC--HHHHHTTCCCSEEECC
T ss_pred CchhhhccccCCCCEEECcCCcCCCc-----cccchhhhccccCCCcCEEEccCCcCC-ccC--HHHHccCCCCCEEECC
Confidence 113333343 488888887533110 011111222 2347888888877522 211 2345678888888885
Q ss_pred E
Q 013265 340 L 340 (446)
Q Consensus 340 ~ 340 (446)
.
T Consensus 706 ~ 706 (876)
T 4ecn_A 706 N 706 (876)
T ss_dssp S
T ss_pred C
Confidence 4
No 76
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.10 E-value=3.1e-06 Score=84.25 Aligned_cols=220 Identities=15% Similarity=0.049 Sum_probs=144.0
Q ss_pred HHcCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce
Q 013265 118 LERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL 197 (446)
Q Consensus 118 ~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~ 197 (446)
.-+.+++|.+..... -.+| ....+++|++|+|+++.+++-. +.. +++|++|++.++...+ +
T Consensus 40 ~l~~L~~L~Ls~n~l---------~~~~----~l~~l~~L~~L~Ls~n~l~~~~----~~~-l~~L~~L~Ls~N~l~~-~ 100 (457)
T 3bz5_A 40 QLATLTSLDCHNSSI---------TDMT----GIEKLTGLTKLICTSNNITTLD----LSQ-NTNLTYLACDSNKLTN-L 100 (457)
T ss_dssp HHTTCCEEECCSSCC---------CCCT----TGGGCTTCSEEECCSSCCSCCC----CTT-CTTCSEEECCSSCCSC-C
T ss_pred HcCCCCEEEccCCCc---------ccCh----hhcccCCCCEEEccCCcCCeEc----ccc-CCCCCEEECcCCCCce-e
Confidence 345788887754321 1233 3457899999999998887642 677 9999999999886433 3
Q ss_pred eEeCCcCccceEEeeccCCCCeEEEE-CCceeEEEEccccc-ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce
Q 013265 198 KVSGPSLKLKHLKLNKLDNLKDLQLH-APNLLSFEYSGPIL-PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH 275 (446)
Q Consensus 198 ~i~~~~~~L~~L~i~~~~~l~~~~i~-~p~L~~l~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~ 275 (446)
.+ ..+++|++|.++++. +..+.+. .++|++|++.++.. .+.++++++|+.+++..+..- .. --+..+++|+
T Consensus 101 ~~-~~l~~L~~L~L~~N~-l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~---~~--~~~~~l~~L~ 173 (457)
T 3bz5_A 101 DV-TPLTKLTYLNCDTNK-LTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI---TK--LDVTPQTQLT 173 (457)
T ss_dssp CC-TTCTTCCEEECCSSC-CSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCC---CC--CCCTTCTTCC
T ss_pred ec-CCCCcCCEEECCCCc-CCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcc---cc--cccccCCcCC
Confidence 33 345889999999886 5555432 48899999888753 345778899999999765210 10 1245788999
Q ss_pred EEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccc
Q 013265 276 TLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTI 355 (446)
Q Consensus 276 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~ 355 (446)
.|++..+.+. .++ +..+++|+.|.+..+.-... -+..+|+|+.|++... . +..+
T Consensus 174 ~L~ls~n~l~---------~l~--l~~l~~L~~L~l~~N~l~~~------~l~~l~~L~~L~Ls~N---~------l~~i 227 (457)
T 3bz5_A 174 TLDCSFNKIT---------ELD--VSQNKLLNRLNCDTNNITKL------DLNQNIQLTFLDCSSN---K------LTEI 227 (457)
T ss_dssp EEECCSSCCC---------CCC--CTTCTTCCEEECCSSCCSCC------CCTTCTTCSEEECCSS---C------CSCC
T ss_pred EEECCCCccc---------eec--cccCCCCCEEECcCCcCCee------ccccCCCCCEEECcCC---c------cccc
Confidence 9999885321 122 56788999999988752111 1577899999998532 1 2222
Q ss_pred cCCCCccccccCCCcEEEEEeee--cCcchHHHHHHHHhcCccccceEEec
Q 013265 356 KDQPYLSFTELRSIRVVELLGFV--GHTADFELVMYLIFSAKLLEKIIIDP 404 (446)
Q Consensus 356 p~c~~~~~~~l~~L~~v~i~~~~--g~~~e~~~~~~ll~~a~~Le~l~i~~ 404 (446)
|-. .+.+|+++.+.+-. +.. ....+.|+.+.+..
T Consensus 228 p~~------~l~~L~~L~l~~N~l~~~~---------~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 228 DVT------PLTQLTYFDCSVNPLTELD---------VSTLSKLTTLHCIQ 263 (457)
T ss_dssp CCT------TCTTCSEEECCSSCCSCCC---------CTTCTTCCEEECTT
T ss_pred Ccc------ccCCCCEEEeeCCcCCCcC---------HHHCCCCCEEeccC
Confidence 311 23789999988643 321 24456666555443
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.10 E-value=1.6e-05 Score=81.22 Aligned_cols=220 Identities=10% Similarity=0.091 Sum_probs=126.9
Q ss_pred ccccccceEEEEEEeChHHHHHHHhc-CCCCcceeeEeccCCCCcee--E-e---CC-----------------------
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCY-CCPVLEVLNVAESSSLTSLK--V-S---GP----------------------- 202 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~-~cp~Le~L~L~~c~~~~~~~--i-~---~~----------------------- 202 (446)
.+++|+.|.|.++.+++..+..+... ..+.|++|++.+|...+.+. + . ..
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~ 326 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhh
Confidence 34566667777777776655444332 15689999998875332110 0 0 00
Q ss_pred ---cCccceEEeeccCCCCeEE--EECCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCC
Q 013265 203 ---SLKLKHLKLNKLDNLKDLQ--LHAPNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQ 273 (446)
Q Consensus 203 ---~~~L~~L~i~~~~~l~~~~--i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~ 273 (446)
..+|++|.+.++. +..+. -..++|++|++.++.. +..+.++++|+.+++..+..... ..+...+..+++
T Consensus 327 ~~~~~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~ 404 (562)
T 3a79_B 327 VFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKVALMTKNMSS 404 (562)
T ss_dssp HHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT-THHHHTTTTCTT
T ss_pred hhccCcceEEEccCCC-cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc-ccchhhhcCCCC
Confidence 0235555555554 22222 2357888888877632 34566788888888876543311 112245677888
Q ss_pred ceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhC-CCceEEEEEEeccccccccccc
Q 013265 274 LHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAA-PSLYKFSLKLVSQYDYESYESV 352 (446)
Q Consensus 274 l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~-p~L~~L~l~~~~~~~~~~~~~~ 352 (446)
|+.|+++.+.+.. ..-...+..+++|++|.+..+.-... +.... ++|+.|+++.. .+
T Consensus 405 L~~L~l~~N~l~~-------~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l~~~L~~L~L~~N---------~l 462 (562)
T 3a79_B 405 LETLDVSLNSLNS-------HAYDRTCAWAESILVLNLSSNMLTGS------VFRCLPPKVKVLDLHNN---------RI 462 (562)
T ss_dssp CCEEECTTSCCBS-------CCSSCCCCCCTTCCEEECCSSCCCGG------GGSSCCTTCSEEECCSS---------CC
T ss_pred CCEEECCCCcCCC-------ccChhhhcCcccCCEEECCCCCCCcc------hhhhhcCcCCEEECCCC---------cC
Confidence 8888888743311 01112345678889998887752221 12333 68999988432 22
Q ss_pred ccccCCCCccccccCCCcEEEEEeee--cCcchHHHHHHHHhcCccccceEEecCC
Q 013265 353 KTIKDQPYLSFTELRSIRVVELLGFV--GHTADFELVMYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 353 ~~~p~c~~~~~~~l~~L~~v~i~~~~--g~~~e~~~~~~ll~~a~~Le~l~i~~~~ 406 (446)
..+|.... .+.+|+++.+.+-. +...+ .+.+.+.|+.+.+....
T Consensus 463 ~~ip~~~~----~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 463 MSIPKDVT----HLQALQELNVASNQLKSVPDG------VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCCTTTT----SSCCCSEEECCSSCCCCCCTT------STTTCTTCCCEECCSCC
T ss_pred cccChhhc----CCCCCCEEECCCCCCCCCCHH------HHhcCCCCCEEEecCCC
Confidence 23444322 45889999998743 22222 24677899998887654
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.09 E-value=2.6e-06 Score=79.43 Aligned_cols=147 Identities=20% Similarity=0.148 Sum_probs=78.4
Q ss_pred ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEE
Q 013265 151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSF 230 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l 230 (446)
...+++|++|+|+++.+++-. . +.. +++|+.|.+.++.... +.-...+++|++|.++++. +..+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~--~-l~~-l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~-i~~~---------- 127 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIK--P-LAN-LKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNG-ISDI---------- 127 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCG--G-GTT-CTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSC-CCCC----------
T ss_pred HhcCCCCCEEEccCCccCCCc--c-ccc-CCCCCEEECCCCcCCC-ChhhccCCCCCEEECCCCc-CCCC----------
Confidence 446778888888877766432 1 667 8888888887765332 2112233566666666654 3222
Q ss_pred EEcccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEE
Q 013265 231 EYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLE 310 (446)
Q Consensus 231 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 310 (446)
-.+.++++|+.++++.+..... ..+..+++|+.|.+.++.+. ... .+..+++|++|.
T Consensus 128 --------~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~l~---------~~~-~l~~l~~L~~L~ 184 (291)
T 1h6t_A 128 --------NGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQIS---------DIV-PLAGLTKLQNLY 184 (291)
T ss_dssp --------GGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCC---------CCG-GGTTCTTCCEEE
T ss_pred --------hhhcCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCccc---------cch-hhcCCCccCEEE
Confidence 1233455555555554422111 23455666666666653221 111 144566666666
Q ss_pred EEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 311 IIGTPKVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 311 L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
+..+.-. ++. -+..+++|+.|++...
T Consensus 185 L~~N~i~-~l~----~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 185 LSKNHIS-DLR----ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCSSCCC-BCG----GGTTCTTCSEEEEEEE
T ss_pred CCCCcCC-CCh----hhccCCCCCEEECcCC
Confidence 6665311 111 1456677777776543
No 79
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.08 E-value=4.9e-07 Score=94.00 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=37.5
Q ss_pred cceEEeeccCCCCeEEE--E---CCceeEEEEccccc----ccccC-------CCCCcceEEecccchhhhhhhhhhhhc
Q 013265 206 LKHLKLNKLDNLKDLQL--H---APNLLSFEYSGPIL----PFSFR-------NVPNLVDASFWGCFSAYIAKNLCQHSI 269 (446)
Q Consensus 206 L~~L~i~~~~~l~~~~i--~---~p~L~~l~~~~~~~----~~~~~-------~~~~L~~l~l~~~~~~~~~~~l~~~l~ 269 (446)
|++|.++++. +..+.- . .++|+.|++.++.. +..+. ..++|+.+++..+.+..... .+..
T Consensus 379 L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~~~ 454 (636)
T 4eco_A 379 VENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK---ELFS 454 (636)
T ss_dssp CCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT---HHHH
T ss_pred CcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH---HHHc
Confidence 6666666554 322210 1 13566776665532 12233 45567777776553332111 3445
Q ss_pred cCCCceEEEEeecc
Q 013265 270 FLVQLHTLKLDTCH 283 (446)
Q Consensus 270 ~l~~l~~L~L~~~~ 283 (446)
.+++|+.|.+..+.
T Consensus 455 ~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 455 TGSPLSSINLMGNM 468 (636)
T ss_dssp TTCCCSEEECCSSC
T ss_pred cCCCCCEEECCCCC
Confidence 56777777777643
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.08 E-value=3.9e-06 Score=77.41 Aligned_cols=212 Identities=16% Similarity=0.112 Sum_probs=119.9
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee-EeCCcCccceEEeeccCCCCeEEE----ECCceeE
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK-VSGPSLKLKHLKLNKLDNLKDLQL----HAPNLLS 229 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~~ 229 (446)
++|++|+|++..+++-.. ..+.+ +++|++|++.++....... ....+++|++|.++++. +..+.. ..++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~-~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-YSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECT-TTTTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCH-hHhcc-ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence 579999999887764321 13677 9999999999985332111 12244789999998886 554432 2478888
Q ss_pred EEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCc
Q 013265 230 FEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCN 305 (446)
Q Consensus 230 l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (446)
|++.+... +..+.++++|+.+++..+..... .+...+..+++|+.|++.++.+.. ..+..+..+++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~ 174 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQS--------IYCTDLRVLHQ 174 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSCCCE--------ECGGGGHHHHT
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCcccee--cCchhhccCCCCCEEECCCCCCCc--------CCHHHhhhhhh
Confidence 88877632 23466788888888876533211 112456778888888888743311 00112223344
Q ss_pred cc----EEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eec
Q 013265 306 LK----HLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVG 379 (446)
Q Consensus 306 L~----~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g 379 (446)
|+ +|.+..+.-. . +..-.-..++|+.|++... .+..+|.. .+..+.+|+++.+.+ +.+
T Consensus 175 L~~l~l~L~ls~n~l~-~---~~~~~~~~~~L~~L~L~~n---------~l~~~~~~---~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMN-F---IQPGAFKEIRLKELALDTN---------QLKSVPDG---IFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CTTCCEEEECCSSCCC-E---ECTTSSCSCCEEEEECCSS---------CCSCCCTT---TTTTCCSCCEEECCSSCBCC
T ss_pred ccccceeeecCCCccc-c---cCccccCCCcccEEECCCC---------ceeecCHh---HhcccccccEEEccCCcccc
Confidence 44 5555544311 0 0001122347888877432 12222221 111347888888876 555
Q ss_pred CcchHHHHHHHHhcCc
Q 013265 380 HTADFELVMYLIFSAK 395 (446)
Q Consensus 380 ~~~e~~~~~~ll~~a~ 395 (446)
....+.++...++...
T Consensus 239 ~c~~l~~l~~~~~~~~ 254 (276)
T 2z62_A 239 SCPRIDYLSRWLNKNS 254 (276)
T ss_dssp CTTTTHHHHHHHHHTG
T ss_pred cCCchHHHHHHHHhcc
Confidence 5555666555555443
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.05 E-value=1.2e-05 Score=86.29 Aligned_cols=102 Identities=13% Similarity=0.040 Sum_probs=51.4
Q ss_pred CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265 225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
++|+.|++.++.. +..+.++++|+.+++..+....... ..+..+++|+.|+++.+.+. ...+..+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~ 334 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD---EAFYGLDNLQVLNLSYNLLG--------ELYSSNF 334 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT---TTTTTCSSCCEEEEESCCCS--------CCCSCSC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh---HHhcCCCCCCEEECCCCCCC--------ccCHHHh
Confidence 4566666655422 2335566667777765543322212 34456667777777663221 1113344
Q ss_pred CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265 301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL 340 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 340 (446)
..+++|+.|++..+.-. .+. ...+..+++|+.|++..
T Consensus 335 ~~l~~L~~L~L~~N~i~-~~~--~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHIA-IIQ--DQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp SSCTTCCEEECCSCCCC-CCC--SSCSCSCCCCCEEEEET
T ss_pred cCCCCCCEEECCCCCCC-ccC--hhhhcCCCCCCEEECCC
Confidence 55666666666655310 000 01235566777777643
No 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.04 E-value=2.8e-06 Score=84.16 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=15.9
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEecc
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAES 191 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c 191 (446)
++++|++|+|.+..++.-. ...+.. +++|++|++.++
T Consensus 110 ~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~L~~N 146 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIP-NGAFVY-LSKLKELWLRNN 146 (440)
T ss_dssp TCSSCCEEECCSSCCSSCC-TTTSCS-CSSCCEEECCSC
T ss_pred CCccCCEEECCCCcCCeeC-HhHhhc-cccCceeeCCCC
Confidence 3445555555544433210 112334 555555555544
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.03 E-value=2.6e-06 Score=78.44 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=49.6
Q ss_pred ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECC
Q 013265 151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAP 225 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p 225 (446)
..++++|++|+|.+..++.- ...++.. +++|++|++.++...... .....+++|++|.+.++. +..+.. ..+
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i-~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTL-PAGIFKE-LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLT 133 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCC-CTTTTSS-CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred hcCCCCCCEEECCCCccCee-ChhhhcC-CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCc
Confidence 35689999999998776532 1234577 999999999987643221 112234677777777765 332211 234
Q ss_pred ceeEEEEccc
Q 013265 226 NLLSFEYSGP 235 (446)
Q Consensus 226 ~L~~l~~~~~ 235 (446)
+|++|++.++
T Consensus 134 ~L~~L~Ls~n 143 (270)
T 2o6q_A 134 KLTYLSLGYN 143 (270)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 5555555444
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.02 E-value=1.9e-06 Score=88.74 Aligned_cols=121 Identities=21% Similarity=0.147 Sum_probs=66.0
Q ss_pred ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCcee
Q 013265 151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLL 228 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~ 228 (446)
...+++|+.|+|+++.+++-.- +.. +++|+.|.|.+|.... +.....+++|+.|.+.++. +..+. ...++|+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~---l~~-l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~ 134 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP---LTN-LKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLE 134 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG---GGG-CTTCCEEECCSSCCCC-CTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCS
T ss_pred HccCCCCCEEEeeCCCCCCChh---hcc-CCCCCEEECcCCCCCC-ChhhccCCCCCEEEecCCC-CCCCccccCCCccC
Confidence 4567888888888777664321 667 8888888888775432 2112234677777777765 33321 1235566
Q ss_pred EEEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeec
Q 013265 229 SFEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTC 282 (446)
Q Consensus 229 ~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~ 282 (446)
.|.+.++... -.+..+++|+.++++.+.+.... . +..+++|+.|.|.++
T Consensus 135 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~----~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSS
T ss_pred EEECCCCccCCchhhcccCCCCEEECcCCcCCCch----h-hccCCCCCEEECcCC
Confidence 6665555321 22345555555555544222110 1 445555555555553
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.01 E-value=2.3e-06 Score=89.65 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=19.6
Q ss_pred ccCCCcEEEEEee--ecCcchHHHHHHHHhcCccccceEEecC
Q 013265 365 ELRSIRVVELLGF--VGHTADFELVMYLIFSAKLLEKIIIDPC 405 (446)
Q Consensus 365 ~l~~L~~v~i~~~--~g~~~e~~~~~~ll~~a~~Le~l~i~~~ 405 (446)
.+.+|+++.+.+- .+.... .+.+.+.|+.+.+...
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~------~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPAS------VFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECTTS
T ss_pred cccCcceeECCCCCCCcCCHh------HhCCCCCCCEEECCCC
Confidence 4567777777542 222111 2356677887777665
No 86
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.00 E-value=6.2e-06 Score=82.04 Aligned_cols=176 Identities=15% Similarity=0.112 Sum_probs=127.1
Q ss_pred cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE
Q 013265 120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV 199 (446)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i 199 (446)
++++.|.+..... -.+| ...+++|++|+|++..+++-. +.. +++|++|++.++.... +.+
T Consensus 64 ~~L~~L~Ls~n~l---------~~~~-----~~~l~~L~~L~Ls~N~l~~~~----~~~-l~~L~~L~L~~N~l~~-l~~ 123 (457)
T 3bz5_A 64 TGLTKLICTSNNI---------TTLD-----LSQNTNLTYLACDSNKLTNLD----VTP-LTKLTYLNCDTNKLTK-LDV 123 (457)
T ss_dssp TTCSEEECCSSCC---------SCCC-----CTTCTTCSEEECCSSCCSCCC----CTT-CTTCCEEECCSSCCSC-CCC
T ss_pred CCCCEEEccCCcC---------CeEc-----cccCCCCCEEECcCCCCceee----cCC-CCcCCEEECCCCcCCe-ecC
Confidence 4788887754321 1122 457899999999998887642 677 9999999999985433 343
Q ss_pred eCCcCccceEEeeccCCCCeEEE-ECCceeEEEEcccc--cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceE
Q 013265 200 SGPSLKLKHLKLNKLDNLKDLQL-HAPNLLSFEYSGPI--LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHT 276 (446)
Q Consensus 200 ~~~~~~L~~L~i~~~~~l~~~~i-~~p~L~~l~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~ 276 (446)
..+++|++|.+.++. +..+.+ ..++|+.|++.++. ..+.+..+++|+.+++..+..... . +..+++++.
T Consensus 124 -~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-----~-l~~l~~L~~ 195 (457)
T 3bz5_A 124 -SQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-----D-VSQNKLLNR 195 (457)
T ss_dssp -TTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-----C-CTTCTTCCE
T ss_pred -CCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-----c-cccCCCCCE
Confidence 345899999999887 555543 35899999998873 234677899999999987643321 2 567899999
Q ss_pred EEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265 277 LKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL 340 (446)
Q Consensus 277 L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 340 (446)
|.+..+.+. .. .+..+++|+.|++..+.-.. ++ +..+++|+.|++..
T Consensus 196 L~l~~N~l~---------~~--~l~~l~~L~~L~Ls~N~l~~-ip-----~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 196 LNCDTNNIT---------KL--DLNQNIQLTFLDCSSNKLTE-ID-----VTPLTQLTYFDCSV 242 (457)
T ss_dssp EECCSSCCS---------CC--CCTTCTTCSEEECCSSCCSC-CC-----CTTCTTCSEEECCS
T ss_pred EECcCCcCC---------ee--ccccCCCCCEEECcCCcccc-cC-----ccccCCCCEEEeeC
Confidence 999885331 11 35678999999999885222 21 67899999999954
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.99 E-value=3.7e-06 Score=78.35 Aligned_cols=163 Identities=19% Similarity=0.137 Sum_probs=102.3
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE----ECCce
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL----HAPNL 227 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L 227 (446)
..+++|+.|.|.+..++.-.. ... +++|+.|++.++...........+++|+.|.++++. +..+.. ..++|
T Consensus 52 ~~l~~L~~L~L~~n~l~~~~~---~~~-l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 52 MPYTRLTQLNLDRAELTKLQV---DGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGEL 126 (290)
T ss_dssp TTCTTCCEEECTTSCCCEEEC---CSC-CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTC
T ss_pred hcCCCCCEEECCCCccCcccC---CCC-CCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCC
Confidence 467899999998877664211 156 999999999988654322323345788888888875 443321 24778
Q ss_pred eEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCC
Q 013265 228 LSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEM 303 (446)
Q Consensus 228 ~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 303 (446)
++|.+.+... +..+..+++|+.+++..+.+..... ..+..+++|+.|.+.++.+. .++..+...
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~L~~N~l~---------~ip~~~~~~ 194 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA---GLLNGLENLDTLLLQENSLY---------TIPKGFFGS 194 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT---TTTTTCTTCCEEECCSSCCC---------CCCTTTTTT
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH---HHhcCcCCCCEEECCCCcCC---------ccChhhccc
Confidence 8888877643 2234567788888887654432222 45567788888888774321 234444556
Q ss_pred CcccEEEEEecC--CCCCHHHHHHHHhhCC
Q 013265 304 CNLKHLEIIGTP--KVNDLIFCIALLEAAP 331 (446)
Q Consensus 304 ~~L~~L~L~~~~--~~~~~~~l~~ll~~~p 331 (446)
.+|++|.|.++. -..++.++...++.-+
T Consensus 195 ~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 195 HLLPFAFLHGNPWLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp CCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred ccCCeEEeCCCCccCcCccHHHHHHHHhCc
Confidence 678888887774 2234445555555443
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.93 E-value=0.00013 Score=78.40 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=78.0
Q ss_pred CccceEEeeccCCCCeEE----EECCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce
Q 013265 204 LKLKHLKLNKLDNLKDLQ----LHAPNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH 275 (446)
Q Consensus 204 ~~L~~L~i~~~~~l~~~~----i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~ 275 (446)
++|+.|.++++. +..+. -..++|+.|++.++.. +..+.++++|+.+++..+....... ..+..+++|+
T Consensus 266 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS---SNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS---CSCSSCTTCC
T ss_pred CCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH---HHhcCCCCCC
Confidence 356666665554 33221 1348999999988743 3457789999999998764432222 4567889999
Q ss_pred EEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 276 TLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 276 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
.|++..+.+. ...+..+..+++|++|.+..+.-. . +..+|+|+.|.+...
T Consensus 342 ~L~L~~N~i~--------~~~~~~~~~l~~L~~L~Ls~N~l~-~-------i~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 342 YIDLQKNHIA--------IIQDQTFKFLEKLQTLDLRDNALT-T-------IHFIPSIPDIFLSGN 391 (844)
T ss_dssp EEECCSCCCC--------CCCSSCSCSCCCCCEEEEETCCSC-C-------CSSCCSCSEEEEESC
T ss_pred EEECCCCCCC--------ccChhhhcCCCCCCEEECCCCCCC-c-------ccCCCCcchhccCCC
Confidence 9999985331 111334667899999999988521 1 123889999998654
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.92 E-value=1.1e-05 Score=72.61 Aligned_cols=186 Identities=13% Similarity=0.090 Sum_probs=113.2
Q ss_pred CCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEE-eChHHHHHHHhcCCCCcceeeEeccCCCCcee-
Q 013265 121 RVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVG-ITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK- 198 (446)
Q Consensus 121 ~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~- 198 (446)
.+++|.+..... -.+|... ..++++|++|+|.+.. ++.-. ...+.+ +++|++|++.+|..+..+.
T Consensus 32 ~l~~L~l~~n~l---------~~i~~~~--~~~l~~L~~L~l~~n~~l~~i~-~~~f~~-l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 32 STQTLKLIETHL---------RTIPSHA--FSNLPNISRIYVSIDVTLQQLE-SHSFYN-LSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp TCCEEEEESCCC---------SEECTTT--TTTCTTCCEEEEECCSSCCEEC-TTTEES-CTTCCEEEEEEETTCCEECT
T ss_pred cccEEEEeCCcc---------eEECHHH--ccCCCCCcEEeCCCCCCcceeC-HhHcCC-CcCCcEEECCCCCCeeEcCH
Confidence 677777754321 2334322 3468899999999875 54211 112567 9999999999865555442
Q ss_pred -EeCCcCccceEEeeccCCCCeEE--EECCcee---EEEEccc-cc----ccccCCCCCcc-eEEecccchhhhhhhhhh
Q 013265 199 -VSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLL---SFEYSGP-IL----PFSFRNVPNLV-DASFWGCFSAYIAKNLCQ 266 (446)
Q Consensus 199 -i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~---~l~~~~~-~~----~~~~~~~~~L~-~l~l~~~~~~~~~~~l~~ 266 (446)
.-..+++|++|.+.++. +..+. -..++|+ +|++.+. .. +..+.++++|+ .+++..+....... .
T Consensus 99 ~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~---~ 174 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG---Y 174 (239)
T ss_dssp TSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT---T
T ss_pred HHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH---h
Confidence 11234789999999875 33322 1235666 8888876 33 23467789999 99997664332212 2
Q ss_pred hhccCCCceEEEEeecc-cccccchhcccccccCCCCC-CcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEE
Q 013265 267 HSIFLVQLHTLKLDTCH-LLIGDSEYRAGRYLHDIPEM-CNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSL 338 (446)
Q Consensus 267 ~l~~l~~l~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l 338 (446)
.+.. ++|+.|++.++. +. ..-...+..+ ++|++|++..+.-. .++. ..+++|+.|.+
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~--------~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~-----~~~~~L~~L~l 233 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLT--------VIDKDAFGGVYSGPSLLDVSQTSVT-ALPS-----KGLEHLKELIA 233 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCC--------EECTTTTTTCSBCCSEEECTTCCCC-CCCC-----TTCTTCSEEEC
T ss_pred hcCC-CCCCEEEcCCCCCcc--------cCCHHHhhccccCCcEEECCCCccc-cCCh-----hHhccCceeec
Confidence 2333 789999998741 21 1112345566 89999999876411 1110 25778888877
No 90
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.92 E-value=5.2e-06 Score=76.39 Aligned_cols=37 Identities=30% Similarity=0.630 Sum_probs=34.4
Q ss_pred CcCCCCChHHHHHHHhCCChhHHH-HHhhccchhhhhc
Q 013265 6 DHINELPDDILVNILSRLTMKEAV-RTSIISSRWRYLW 42 (446)
Q Consensus 6 D~is~LPd~iL~~ILs~Lp~kd~~-rts~lSkrWr~lw 42 (446)
..+..||||+|.+||++||.++++ +++.|||+|+.+-
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 468899999999999999999999 9999999999863
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.92 E-value=5.2e-06 Score=75.49 Aligned_cols=147 Identities=20% Similarity=0.153 Sum_probs=82.2
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee-EeCCcCccceEEeeccCCCCeEEE----ECCceeE
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK-VSGPSLKLKHLKLNKLDNLKDLQL----HAPNLLS 229 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~~ 229 (446)
++|+.|+|.+..+++.. ...+.+ +++|++|++.++....... ....+++|+.|.+.++. +..+.. ..++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLS-DATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEccCCCcCccC-HhHhcC-cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCE
Confidence 57888888887765421 123567 8889999888875433211 11234678888877765 333321 2366777
Q ss_pred EEEcccccc----cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCc
Q 013265 230 FEYSGPILP----FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCN 305 (446)
Q Consensus 230 l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (446)
|++.+.... ..+.++++|+.+++..+.+..... ..+..+++|+.|+|.++.+. ...+..+..+++
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~ 180 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA---GAFDKLTNLQTLSLSTNQLQ--------SVPHGAFDRLGK 180 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTT
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH---HHcCcCcCCCEEECCCCcCC--------ccCHHHHhCCCC
Confidence 776665321 224556677777776553322211 24456667777777663221 111223445667
Q ss_pred ccEEEEEecC
Q 013265 306 LKHLEIIGTP 315 (446)
Q Consensus 306 L~~L~L~~~~ 315 (446)
|++|.|..+.
T Consensus 181 L~~L~l~~N~ 190 (251)
T 3m19_A 181 LQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSCC
T ss_pred CCEEEeeCCc
Confidence 7777776664
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.91 E-value=1.8e-05 Score=71.86 Aligned_cols=167 Identities=16% Similarity=0.107 Sum_probs=97.8
Q ss_pred CccceEEeeccCCCCeEEE----ECCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce
Q 013265 204 LKLKHLKLNKLDNLKDLQL----HAPNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH 275 (446)
Q Consensus 204 ~~L~~L~i~~~~~l~~~~i----~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~ 275 (446)
++++.|.+.++. +..+.. ..++|++|++.+... +..+.++++|+.+++..+.+..... ..+..+++|+
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL---GVFDHLTQLD 110 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT---TTTTTCTTCC
T ss_pred CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh---hHhcccCCCC
Confidence 456666666554 322211 236777777766532 2235678888888887664432222 4567888999
Q ss_pred EEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccc
Q 013265 276 TLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTI 355 (446)
Q Consensus 276 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~ 355 (446)
.|.+.++.+. ...+..+..+++|++|.|..+.-..-. ...+..+++|+.|++... .+..+
T Consensus 111 ~L~L~~N~l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~N---------~l~~~ 170 (251)
T 3m19_A 111 KLYLGGNQLK--------SLPSGVFDRLTKLKELRLNTNQLQSIP---AGAFDKLTNLQTLSLSTN---------QLQSV 170 (251)
T ss_dssp EEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSS---------CCSCC
T ss_pred EEEcCCCcCC--------CcChhHhccCCcccEEECcCCcCCccC---HHHcCcCcCCCEEECCCC---------cCCcc
Confidence 9999884331 111223566889999999887411110 123567899999998533 11122
Q ss_pred cC-CCCccccccCCCcEEEEEe--eecC-cchHHHHHHHHhcCcccc
Q 013265 356 KD-QPYLSFTELRSIRVVELLG--FVGH-TADFELVMYLIFSAKLLE 398 (446)
Q Consensus 356 p~-c~~~~~~~l~~L~~v~i~~--~~g~-~~e~~~~~~ll~~a~~Le 398 (446)
+. .+ ..+.+|+++.+.+ +.+. ..-..+..++-++...+.
T Consensus 171 ~~~~~----~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~ 213 (251)
T 3m19_A 171 PHGAF----DRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVK 213 (251)
T ss_dssp CTTTT----TTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBC
T ss_pred CHHHH----hCCCCCCEEEeeCCceeCCccccHHHHHHHHhccccee
Confidence 21 11 1347899999987 4555 344456666666655443
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.91 E-value=8.7e-06 Score=75.84 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=74.0
Q ss_pred ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEE
Q 013265 151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSF 230 (446)
Q Consensus 151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l 230 (446)
...+++|+.|.|.+..+++- .. +.. +++|+.|++.+|.... +.....+++|+.|.++++. +..+.
T Consensus 86 l~~l~~L~~L~l~~n~l~~~--~~-l~~-l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~-l~~~~--------- 150 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDL--SS-LKD-LKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNK-ITDIT--------- 150 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCG--GG-GTT-CTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC-CCCCG---------
T ss_pred cccCCCCCEEECCCCcCCCC--hh-hcc-CCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCc-CCcch---------
Confidence 45789999999999888753 22 778 9999999999886433 2212234678888887765 33221
Q ss_pred EEcccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEE
Q 013265 231 EYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLE 310 (446)
Q Consensus 231 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 310 (446)
.+.++++|+.++++.+...... . +..+++|+.|.+.++.+. .++ .+..+++|+.|+
T Consensus 151 ---------~l~~l~~L~~L~L~~N~l~~~~----~-l~~l~~L~~L~L~~N~i~---------~l~-~l~~l~~L~~L~ 206 (291)
T 1h6t_A 151 ---------VLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNHIS---------DLR-ALAGLKNLDVLE 206 (291)
T ss_dssp ---------GGGGCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCC---------BCG-GGTTCTTCSEEE
T ss_pred ---------hhccCCCCCEEEccCCccccch----h-hcCCCccCEEECCCCcCC---------CCh-hhccCCCCCEEE
Confidence 2334555555555544222110 1 455666666666653221 111 244566667776
Q ss_pred EEec
Q 013265 311 IIGT 314 (446)
Q Consensus 311 L~~~ 314 (446)
+..+
T Consensus 207 l~~n 210 (291)
T 1h6t_A 207 LFSQ 210 (291)
T ss_dssp EEEE
T ss_pred CcCC
Confidence 6665
No 94
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.89 E-value=1.3e-06 Score=82.93 Aligned_cols=167 Identities=13% Similarity=0.024 Sum_probs=74.9
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCe--E---EEECC
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKD--L---QLHAP 225 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~--~---~i~~p 225 (446)
.++++|++|+|.+..++.- . ... .++|++|++.++...... .....+++|++|.+.++. +.. + .+...
T Consensus 99 ~~l~~L~~L~L~~n~l~~l--~--~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEI--P--PNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL 172 (332)
T ss_dssp TTCTTCCEEECCSSCCCSC--C--SSC-CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC
T ss_pred hCcCCCCEEECCCCcCCcc--C--ccc-cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC
Confidence 3456666666666554421 0 011 356666666655432211 111233566666666554 211 0 01112
Q ss_pred ceeEEEEcccccc-cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCC
Q 013265 226 NLLSFEYSGPILP-FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC 304 (446)
Q Consensus 226 ~L~~l~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (446)
+|+.|++.++... +...-.++|+++++..+....... ..+..+++|+.|++.++.+. ...+..+..++
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~ 241 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL---EDLLRYSKLYRLGLGHNQIR--------MIENGSLSFLP 241 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT---TSSTTCTTCSCCBCCSSCCC--------CCCTTGGGGCT
T ss_pred ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCCcCC--------cCChhHhhCCC
Confidence 5555555544321 111112456666665442221111 23455666666666653221 01112344556
Q ss_pred cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
+|++|++..+.-. . +..-+..+++|+.|++.
T Consensus 242 ~L~~L~L~~N~l~-~---lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 242 TLRELHLDNNKLS-R---VPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp TCCEEECCSSCCC-B---CCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCe-e---cChhhhcCccCCEEECC
Confidence 6777776665311 1 11124566777777764
No 95
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.88 E-value=3.7e-06 Score=71.29 Aligned_cols=124 Identities=20% Similarity=0.194 Sum_probs=52.9
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCe-EE---EECCceeEE
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKD-LQ---LHAPNLLSF 230 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~-~~---i~~p~L~~l 230 (446)
++|++|+|.++.+++..+...+.. +++|+.|++.+|.... +.....+++|++|.++++. +.. +. -..++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCC-CSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCC-hhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEE
Confidence 556666666555543333333455 5666666666554222 1111223455555555544 221 10 013444444
Q ss_pred EEccccc---c--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265 231 EYSGPIL---P--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT 281 (446)
Q Consensus 231 ~~~~~~~---~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~ 281 (446)
++.++.. + ..+.++++|+.+++..+.+..........+..+++|+.|++..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 4444321 1 2334455555555544422211100002344555555555554
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.87 E-value=5.8e-06 Score=85.10 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=107.5
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeE
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLS 229 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~ 229 (446)
..+++|+.|.|.++.+.+- . -+.. +++|+.|.|.+|....... ...+++|+.|.+.++. +..+. -..++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~-~l~~-l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--Q-GIQY-LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--T-TGGG-CTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC--h-HHcc-CCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCE
Confidence 3577888888887776542 1 1567 8999999998875433322 2344788888888875 44331 12478888
Q ss_pred EEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCccc
Q 013265 230 FEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLK 307 (446)
Q Consensus 230 l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 307 (446)
|.+.++... -.+.++++|+.++++.+.+... ..+..+++|+.|.|+.+.+. .... +..+++|+
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~---------~~~~-l~~l~~L~ 178 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQIS---------DIVP-LAGLTKLQ 178 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSCCC---------CCGG-GTTCTTCC
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCCcCC---------Cchh-hccCCCCC
Confidence 888877432 2466788888888877643221 45677888999998875331 1111 56778889
Q ss_pred EEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 308 HLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 308 ~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
+|.|..+.-. ++ .-+..+++|+.|+|...
T Consensus 179 ~L~Ls~N~i~-~l----~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 179 NLYLSKNHIS-DL----RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp EEECCSSCCC-BC----GGGTTCTTCSEEECCSE
T ss_pred EEECcCCCCC-CC----hHHccCCCCCEEEccCC
Confidence 8888887421 11 23677888998888543
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.87 E-value=2.4e-05 Score=73.47 Aligned_cols=223 Identities=12% Similarity=0.050 Sum_probs=118.4
Q ss_pred cccccceEEEEEEeChHHHHHHHh--cCCCCcceeeEeccCCCCcee--Ee-CCcCccceEEeeccCCCCe-------E-
Q 013265 154 FRHLTDLSLTTVGITGEVLEHLLC--YCCPVLEVLNVAESSSLTSLK--VS-GPSLKLKHLKLNKLDNLKD-------L- 220 (446)
Q Consensus 154 ~~~L~~L~L~~~~~~~~~l~~ll~--~~cp~Le~L~L~~c~~~~~~~--i~-~~~~~L~~L~i~~~~~l~~-------~- 220 (446)
...++.|.+.++.+++..+..+.. . ++.|++|++.+|...+... +. ...++|++|.++++. +.. .
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHH
Confidence 445788888888888776655433 4 6789999999987544332 21 445789999999886 322 1
Q ss_pred EEECCceeEEEEccccc----ccccCCCCCcceEEecccchhhh-hhhhhhhhccCCCceEEEEeecccccccchhcccc
Q 013265 221 QLHAPNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYI-AKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGR 295 (446)
Q Consensus 221 ~i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~ 295 (446)
....++|++|++.++.. +..+.++++|+.++++.+..... .......+..+++|+.|.++++.+... . .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----~--~ 214 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP----T--G 214 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----H--H
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----H--H
Confidence 01367788888777633 23455677777777766532110 000012235667777777776433110 0 0
Q ss_pred ccc-CCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEE
Q 013265 296 YLH-DIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVEL 374 (446)
Q Consensus 296 ~~~-~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i 374 (446)
... .+..+++|++|+|+.+.-....+.-..-+...|+|++|+++.. .+..+|.... .+|+++.+
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N---------~l~~lp~~~~------~~L~~L~L 279 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA---------GLEQVPKGLP------AKLRVLDL 279 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS---------CCCSCCSCCC------SCCSCEEC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC---------CCCchhhhhc------CCCCEEEC
Confidence 000 1234567777777666311110000000111267777776322 2223344433 66777777
Q ss_pred EeeecCcchHHHHHHHHhcCccccceEEecC
Q 013265 375 LGFVGHTADFELVMYLIFSAKLLEKIIIDPC 405 (446)
Q Consensus 375 ~~~~g~~~e~~~~~~ll~~a~~Le~l~i~~~ 405 (446)
.+-.-..-.. ..+.+.|+.+.+...
T Consensus 280 s~N~l~~~~~------~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 280 SSNRLNRAPQ------PDELPEVDNLTLDGN 304 (310)
T ss_dssp CSCCCCSCCC------TTSCCCCSCEECSST
T ss_pred CCCcCCCCch------hhhCCCccEEECcCC
Confidence 6532211000 145577777776654
No 98
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.86 E-value=1.8e-05 Score=66.96 Aligned_cols=133 Identities=15% Similarity=0.058 Sum_probs=80.9
Q ss_pred CCCcceeeEeccCCC-Cce-eEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcccccccccCCCCCcceEEecccch
Q 013265 180 CPVLEVLNVAESSSL-TSL-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFS 257 (446)
Q Consensus 180 cp~Le~L~L~~c~~~-~~~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~ 257 (446)
.+.|++|++.+|... +.+ .....+++|+.|.+.++. +..+ ..+..+++|+.+++..+.+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~N~l 83 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV------------------SNLPKLPKLKKLELSENRI 83 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC------------------SSCCCCSSCCEEEEESCCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh------------------hhhccCCCCCEEECcCCcC
Confidence 577899999888643 122 122334566667666664 3222 1345667777777766533
Q ss_pred hhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEE
Q 013265 258 AYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFS 337 (446)
Q Consensus 258 ~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~ 337 (446)
.... ...+..+++|+.|.+.++.+.. ......+..+++|++|++..+.-..........+..+|+|+.|+
T Consensus 84 ~~~~---~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 84 FGGL---DMLAEKLPNLTHLNLSGNKLKD-------ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CSCC---CHHHHHCTTCCEEECBSSSCCS-------SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred chHH---HHHHhhCCCCCEEeccCCccCc-------chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 3212 2556678999999998853311 11113456788999999988752111112234678899999999
Q ss_pred EEEe
Q 013265 338 LKLV 341 (446)
Q Consensus 338 l~~~ 341 (446)
+...
T Consensus 154 l~~n 157 (168)
T 2ell_A 154 GYDR 157 (168)
T ss_dssp TEET
T ss_pred CCCC
Confidence 8654
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.85 E-value=1.8e-05 Score=72.54 Aligned_cols=76 Identities=17% Similarity=0.120 Sum_probs=42.2
Q ss_pred CceeEEEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265 225 PNLLSFEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE 302 (446)
Q Consensus 225 p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
++|+.|++.++... -.+.++++|+.++++.+.+... ..+..+++|+.|.+.++.+. .. ..+..
T Consensus 106 ~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~i~---------~~-~~l~~ 170 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNEIT---------NT-GGLTR 170 (263)
T ss_dssp SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSCCC---------BC-TTSTT
T ss_pred CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCcCc---------ch-HHhcc
Confidence 44555544444211 1355677777777765533211 23566777888887764321 11 34556
Q ss_pred CCcccEEEEEecC
Q 013265 303 MCNLKHLEIIGTP 315 (446)
Q Consensus 303 ~~~L~~L~L~~~~ 315 (446)
+++|+.|++..+.
T Consensus 171 l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 171 LKKVNWIDLTGQK 183 (263)
T ss_dssp CCCCCEEEEEEEE
T ss_pred CCCCCEEeCCCCc
Confidence 7777777777763
No 100
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.84 E-value=3.9e-06 Score=77.44 Aligned_cols=175 Identities=17% Similarity=0.071 Sum_probs=106.3
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeE---EE-ECCc
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDL---QL-HAPN 226 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~---~i-~~p~ 226 (446)
.++++|++|+|.++.++.-. ...+.. +++|+.|++.++...... .....+++|++|.+.++. +..+ .+ ..++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~-~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIE-DGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT 125 (276)
T ss_dssp TTCTTCSEEECTTCCCCEEC-TTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTT
T ss_pred ccccCCcEEECCCCcCCccC-HHHccC-CcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCC
Confidence 46788999999887665321 123567 899999999887543221 112244788999888775 3222 12 3588
Q ss_pred eeEEEEccccc-----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce-EEEEeecccccccchhcccccccCC
Q 013265 227 LLSFEYSGPIL-----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH-TLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 227 L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~-~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
|++|++.+... +..+.++++|+.+++..+...........-+..++.+. .|++....+. .++...
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~---------~~~~~~ 196 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN---------FIQPGA 196 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC---------EECTTS
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc---------ccCccc
Confidence 99998887632 34577889999999987643322221112233444444 7777763221 122222
Q ss_pred CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
....+|++|++..+.-..- ...++..+++|+.|++...
T Consensus 197 ~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 197 FKEIRLKELALDTNQLKSV---PDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp SCSCCEEEEECCSSCCSCC---CTTTTTTCCSCCEEECCSS
T ss_pred cCCCcccEEECCCCceeec---CHhHhcccccccEEEccCC
Confidence 3344899999988751111 1234678999999999644
No 101
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.83 E-value=1.6e-05 Score=74.98 Aligned_cols=217 Identities=13% Similarity=0.058 Sum_probs=142.7
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY 232 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~ 232 (446)
.+++|++|+|++..+++.. ...+.. +++|+.|++.++.......+ ..+++|++|.++++. +..+. ..++|++|.+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQIS-AADLAP-FTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNY-VQELL-VGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCCCC-HHHHTT-CTTCCEEECTTSCCEEEEEE-TTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred cCCCCCEEECcCCccCcCC-HHHhhC-CCcCCEEECCCCcCCcchhh-hhcCCCCEEECcCCc-ccccc-CCCCcCEEEC
Confidence 5789999999998877532 234678 99999999999876544443 345899999999986 66555 4599999999
Q ss_pred ccccc-ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEE
Q 013265 233 SGPIL-PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEI 311 (446)
Q Consensus 233 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 311 (446)
.++.. ......+++|+.+++..+....... ..+..+++|+.|+++++.+.. .........+++|++|.+
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEIDT-------VNFAELAASSDTLEHLNL 176 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCSGGG---BCTGGGSSEEEEECTTSCCCE-------EEGGGGGGGTTTCCEEEC
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCCccc---hhhhccCCCCEEECCCCCCCc-------ccHHHHhhccCcCCEEEC
Confidence 88754 2344567889999998764433222 345678999999999853321 111112235789999999
Q ss_pred EecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHH
Q 013265 312 IGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLI 391 (446)
Q Consensus 312 ~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll 391 (446)
..+.-. .... ...+++|+.|++... . +..+|.. +..+.+|+++.+.+-.-..-. .-+
T Consensus 177 ~~N~l~-~~~~----~~~l~~L~~L~Ls~N---~------l~~l~~~----~~~l~~L~~L~L~~N~l~~l~-----~~~ 233 (317)
T 3o53_A 177 QYNFIY-DVKG----QVVFAKLKTLDLSSN---K------LAFMGPE----FQSAAGVTWISLRNNKLVLIE-----KAL 233 (317)
T ss_dssp TTSCCC-EEEC----CCCCTTCCEEECCSS---C------CCEECGG----GGGGTTCSEEECTTSCCCEEC-----TTC
T ss_pred CCCcCc-cccc----ccccccCCEEECCCC---c------CCcchhh----hcccCcccEEECcCCcccchh-----hHh
Confidence 887511 1111 124899999999533 1 1122221 113478999999764322100 013
Q ss_pred hcCccccceEEecCCC
Q 013265 392 FSAKLLEKIIIDPCPT 407 (446)
Q Consensus 392 ~~a~~Le~l~i~~~~~ 407 (446)
.+.+.|+.+.+....-
T Consensus 234 ~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CCCTTCCEEECTTCCC
T ss_pred hcCCCCCEEEccCCCc
Confidence 6678999999886653
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.80 E-value=3.2e-05 Score=67.38 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=49.5
Q ss_pred cCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCH
Q 013265 241 FRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDL 320 (446)
Q Consensus 241 ~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 320 (446)
+.++++|+.+++..+....... ..+..+++|+.|.+..+.+.. ..+..+..+++|++|++..+....++
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~Ls~n~i~~--------~~~~~l~~l~~L~~L~L~~n~~i~~~ 152 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKI---PNLSGLTSLTLLDISHSAHDD--------SILTKINTLPKVNSIDLSYNGAITDI 152 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGS---CCCTTCTTCCEEECCSSBCBG--------GGHHHHTTCSSCCEEECCSCTBCCCC
T ss_pred hhcCCCCCEEEeECCccCcccC---hhhcCCCCCCEEEecCCccCc--------HhHHHHhhCCCCCEEEccCCCCcccc
Confidence 4566777777776653322112 345667888888887743311 11233456778888888776412222
Q ss_pred HHHHHHHhhCCCceEEEEE
Q 013265 321 IFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 321 ~~l~~ll~~~p~L~~L~l~ 339 (446)
. .+..+|+|+.|++.
T Consensus 153 ~----~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 153 M----PLKTLPELKSLNIQ 167 (197)
T ss_dssp G----GGGGCSSCCEEECT
T ss_pred H----hhcCCCCCCEEECC
Confidence 1 36778888888873
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.78 E-value=2.2e-06 Score=71.17 Aligned_cols=61 Identities=21% Similarity=0.100 Sum_probs=34.0
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccC
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLD 215 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~ 215 (446)
..++|+.|++.++.+++..+...+.. +++|+.|++.+|..... .....+++|+.|.++++.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc
Confidence 34677777777776663333344566 77777777776643222 111223455666655554
No 104
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.78 E-value=2e-05 Score=75.63 Aligned_cols=122 Identities=16% Similarity=0.062 Sum_probs=60.0
Q ss_pred CCCcceEEecccchhhhhhhhhhhh-ccCCCceEEEEeecccccccchhcccccccCC--CCCCcccEEEEEecCCCCCH
Q 013265 244 VPNLVDASFWGCFSAYIAKNLCQHS-IFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI--PEMCNLKHLEIIGTPKVNDL 320 (446)
Q Consensus 244 ~~~L~~l~l~~~~~~~~~~~l~~~l-~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~ 320 (446)
.++|+.+++..+.... ..+..+. ..+|+|+.|.|.......+. ......+...+ ..|++|++|.|..+.-..+
T Consensus 192 ~~~L~~L~L~~~~l~~--~~l~~l~~~~lp~L~~L~L~~~~~~~~~-~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~- 267 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPD--SVVEDILGSDLPNLEKLVLYVGVEDYGF-DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV- 267 (362)
T ss_dssp CTTCSEEEEECSBCCH--HHHHHHHHSBCTTCCEEEEECBCGGGTC-CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH-
T ss_pred CCCCcEEEEecCCCCh--HHHHHHHHccCCCCcEEEEecccccccc-chhHHHHHHHHhcCCCCCcCEEeCCCCCCchH-
Confidence 5667777775443221 1111232 36889999988631100000 00000111112 3588999999987742211
Q ss_pred HHHHHHHh--hCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee
Q 013265 321 IFCIALLE--AAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV 378 (446)
Q Consensus 321 ~~l~~ll~--~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~ 378 (446)
....+.+ .+|+|++|+|+.. ...+.+ ...++.... ++.+|+.|.+.+..
T Consensus 268 -~~~~la~a~~~~~L~~LdLs~n---~L~d~G-~~~L~~~L~----~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 268 -VVEMFLESDILPQLETMDISAG---VLTDEG-ARLLLDHVD----KIKHLKFINMKYNY 318 (362)
T ss_dssp -HHHHHHHCSSGGGCSEEECCSS---CCBHHH-HHHHHTTHH----HHTTCSEEECCSBB
T ss_pred -HHHHHHhCccCCCCCEEECCCC---CCChHH-HHHHHhhcc----cCCcceEEECCCCc
Confidence 1222332 4788999999432 222222 111222211 23789999997654
No 105
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.76 E-value=7.3e-06 Score=74.55 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=32.7
Q ss_pred cCCCCChHHHHHHHhCCChhHHHHHhhccchhhhh
Q 013265 7 HINELPDDILVNILSRLTMKEAVRTSIISSRWRYL 41 (446)
Q Consensus 7 ~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~l 41 (446)
-|+.||+||+.+||+||+.+|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999964
No 106
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.71 E-value=3e-06 Score=72.04 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=54.2
Q ss_pred cccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee---EeC---CcCccceEEeeccC
Q 013265 142 YTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK---VSG---PSLKLKHLKLNKLD 215 (446)
Q Consensus 142 ~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~---i~~---~~~~L~~L~i~~~~ 215 (446)
..+|... ..-..|+.|+|+++.++++++..+ ++ |++|++|+|.+|..+++-. +.. .+++|++|++++|.
T Consensus 51 ~~LP~~~---~~~~~L~~LDLs~~~Itd~GL~~L-~~-~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 51 NHLPTGP---LDKYKIQAIDATDSCIMSIGFDHM-EG-LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp GGSCCCS---TTCCCEEEEEEESCCCCGGGGGGG-TT-CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred ccCCccc---CCCceEeEEeCcCCCccHHHHHHh-cC-CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 4566432 123479999999999999998875 78 9999999999999876542 332 13579999999988
Q ss_pred CCCe
Q 013265 216 NLKD 219 (446)
Q Consensus 216 ~l~~ 219 (446)
.+.+
T Consensus 126 ~ITD 129 (176)
T 3e4g_A 126 NVTD 129 (176)
T ss_dssp TCCH
T ss_pred cCCH
Confidence 6543
No 107
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.68 E-value=3.1e-05 Score=66.18 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=47.9
Q ss_pred CCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccc--cCCCCCCcccEEEEEecCCCCC
Q 013265 242 RNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYL--HDIPEMCNLKHLEIIGTPKVND 319 (446)
Q Consensus 242 ~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~ 319 (446)
.++++|+.++++.+.+..... .++..+++|+.|.++++.+. .++ ..+..+++|++|.+..+.-...
T Consensus 61 ~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~i~---------~~~~~~~l~~l~~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 61 PLLRRLKTLLVNNNRICRIGE---GLDQALPDLTELILTNNSLV---------ELGDLDPLASLKSLTYLCILRNPVTNK 128 (176)
T ss_dssp CCCSSCCEEECCSSCCCEECS---CHHHHCTTCCEEECCSCCCC---------CGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred ccCCCCCEEECCCCcccccCc---chhhcCCCCCEEECCCCcCC---------cchhhHhhhcCCCCCEEEecCCCCCCc
Confidence 345555555555443221111 33456777777777764321 111 1344667788888877641111
Q ss_pred HHHHHHHHhhCCCceEEEEEEe
Q 013265 320 LIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 320 ~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
...-..++..+|+|+.|++...
T Consensus 129 ~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 129 KHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTHHHHHHHHCTTCSEETTEEC
T ss_pred HhHHHHHHHHCCccceeCCCcC
Confidence 1122345788899999888654
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.68 E-value=1.4e-05 Score=66.22 Aligned_cols=130 Identities=15% Similarity=0.061 Sum_probs=74.2
Q ss_pred CCCcceeeEeccCCC-Cce-eEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcccccccccCCCCCcceEEecccch
Q 013265 180 CPVLEVLNVAESSSL-TSL-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFS 257 (446)
Q Consensus 180 cp~Le~L~L~~c~~~-~~~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~ 257 (446)
.+.|++|++.+|... +.+ .....+++|+.|.+.++. +..+ ..+.++++|+.++++.+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI------------------ANLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC------------------TTCCCCTTCCEEECCSSCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc------------------hhhhcCCCCCEEECCCCcc
Confidence 567888888887643 122 222334566666666654 2222 1345667777777766533
Q ss_pred hhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEE
Q 013265 258 AYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFS 337 (446)
Q Consensus 258 ~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~ 337 (446)
... +...+..+++++.|.++++.+.. ...+..+..+++|++|++..+.-..........+..+|+|+.|+
T Consensus 77 ~~~---~~~~~~~l~~L~~L~ls~N~i~~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 77 SGG---LEVLAEKCPNLTHLNLSGNKIKD-------LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CSC---THHHHHHCTTCCEEECTTSCCCS-------HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred cch---HHHHhhhCCCCCEEECCCCcCCC-------hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 221 22555668888888888743311 11123455678888888877741111111234677888888876
Q ss_pred E
Q 013265 338 L 338 (446)
Q Consensus 338 l 338 (446)
+
T Consensus 147 l 147 (149)
T 2je0_A 147 G 147 (149)
T ss_dssp T
T ss_pred C
Confidence 5
No 109
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.65 E-value=4.1e-06 Score=80.96 Aligned_cols=170 Identities=15% Similarity=0.010 Sum_probs=90.0
Q ss_pred cccccceEEEEEEeChHH---HHHHHhcCCCCcceeeEeccCCCCc-e-eEeCCcCccceEEeeccCCCCeEEEECCcee
Q 013265 154 FRHLTDLSLTTVGITGEV---LEHLLCYCCPVLEVLNVAESSSLTS-L-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLL 228 (446)
Q Consensus 154 ~~~L~~L~L~~~~~~~~~---l~~ll~~~cp~Le~L~L~~c~~~~~-~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~ 228 (446)
.++|+.|+|+++.+++.+ +..++...++.|++|+|.+|..... + .+...+++|++|.+++|. +......
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~----- 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACK----- 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHH-----
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHH-----
Confidence 456777777777766543 3333333135777777776642110 1 111112345555554443 1110000
Q ss_pred EEEEccccccccc-CCCCCcceEEecccchhh-hhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcc
Q 013265 229 SFEYSGPILPFSF-RNVPNLVDASFWGCFSAY-IAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNL 306 (446)
Q Consensus 229 ~l~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~-~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L 306 (446)
...-.+ ...+.|+++++..+.+.. ....+...+...++|++|+|+++.+.. .....+...+...++|
T Consensus 145 -------~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~----~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 145 -------DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD----EGLELLAAQLDRNRQL 213 (372)
T ss_dssp -------HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH----HHHHHHHHHGGGCSCC
T ss_pred -------HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc----HHHHHHHHHHhcCCCc
Confidence 000001 234566666666554332 223344566778889999988854321 1111223334556789
Q ss_pred cEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEE
Q 013265 307 KHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKL 340 (446)
Q Consensus 307 ~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~ 340 (446)
++|+|..+. .......+...++.+|+|+.|+|..
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 999998885 2233446777788899999999943
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.57 E-value=5.7e-06 Score=75.88 Aligned_cols=139 Identities=17% Similarity=0.070 Sum_probs=77.1
Q ss_pred CCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeEEEEccccccc--ccCCCCCcceEEeccc
Q 013265 180 CPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLSFEYSGPILPF--SFRNVPNLVDASFWGC 255 (446)
Q Consensus 180 cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~l~~~~~~~~~--~~~~~~~L~~l~l~~~ 255 (446)
++.|+.|++.+|.. ..+.-...+++|+.|.++++. +..+. -..++|+.|++.++...- .+.. ++|+.++++.+
T Consensus 40 l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N 116 (263)
T 1xeu_A 40 LSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNN 116 (263)
T ss_dssp HTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSS
T ss_pred cCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCccCCcCcccc-CcccEEEccCC
Confidence 55555555555422 111111122455555555443 22211 123556666665553210 1222 78999999776
Q ss_pred chhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceE
Q 013265 256 FSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYK 335 (446)
Q Consensus 256 ~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~ 335 (446)
..... ..+..+++|+.|+++.+.+. .+ ..+..+++|++|++..+.-... ..+..+++|+.
T Consensus 117 ~l~~~-----~~l~~l~~L~~L~Ls~N~i~---------~~-~~l~~l~~L~~L~L~~N~i~~~-----~~l~~l~~L~~ 176 (263)
T 1xeu_A 117 ELRDT-----DSLIHLKNLEILSIRNNKLK---------SI-VMLGFLSKLEVLDLHGNEITNT-----GGLTRLKKVNW 176 (263)
T ss_dssp CCSBS-----GGGTTCTTCCEEECTTSCCC---------BC-GGGGGCTTCCEEECTTSCCCBC-----TTSTTCCCCCE
T ss_pred ccCCC-----hhhcCcccccEEECCCCcCC---------CC-hHHccCCCCCEEECCCCcCcch-----HHhccCCCCCE
Confidence 43321 23677899999999874331 11 1355678999999988752111 34678899999
Q ss_pred EEEEEe
Q 013265 336 FSLKLV 341 (446)
Q Consensus 336 L~l~~~ 341 (446)
|++...
T Consensus 177 L~l~~N 182 (263)
T 1xeu_A 177 IDLTGQ 182 (263)
T ss_dssp EEEEEE
T ss_pred EeCCCC
Confidence 999765
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.50 E-value=0.00019 Score=63.70 Aligned_cols=147 Identities=13% Similarity=0.045 Sum_probs=77.8
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEEECCceeEEEEc
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYS 233 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~ 233 (446)
++|+.|+|.+..++.-. ...+.. +++|+.|+|.++...... ..-..+++|++|.++++. +..+
T Consensus 32 ~~l~~L~l~~n~i~~i~-~~~~~~-l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l------------- 95 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP-PGAFSP-YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITEL------------- 95 (220)
T ss_dssp TTCCEEECCSSCCCEEC-TTSSTT-CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCC-------------
T ss_pred cCCCEEECCCCcCCCcC-HhHhhC-CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCcc-------------
Confidence 57778887776654311 112456 777888877776432110 001122344444444433 1111
Q ss_pred ccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEe
Q 013265 234 GPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIG 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 313 (446)
.+..+.++++|+.+++..+.+..... ..+..+++|+.|+|.++.+.. ..+..+..+++|++|.|..
T Consensus 96 ---~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 96 ---PKSLFEGLFSLQLLLLNANKINCLRV---DAFQDLHNLNLLSLYDNKLQT--------IAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCSC--------CCTTTTTTCTTCCEEECCS
T ss_pred ---CHhHccCCCCCCEEECCCCCCCEeCH---HHcCCCCCCCEEECCCCcCCE--------ECHHHHhCCCCCCEEEeCC
Confidence 11234567777777776654332222 445677788888887743211 1122355677888888877
Q ss_pred cC--CCCCHHHHHHHHhhCC
Q 013265 314 TP--KVNDLIFCIALLEAAP 331 (446)
Q Consensus 314 ~~--~~~~~~~l~~ll~~~p 331 (446)
+. -.....++...++.-+
T Consensus 162 N~~~c~c~l~~l~~~l~~~~ 181 (220)
T 2v9t_B 162 NPFICDCHLKWLADYLHTNP 181 (220)
T ss_dssp SCEECSGGGHHHHHHHHHCC
T ss_pred CCcCCCCccHHHHHHHHhCC
Confidence 74 3344556666665543
No 112
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.47 E-value=3.1e-05 Score=76.54 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=36.0
Q ss_pred cCCcCCCCChHHHHHHHhCCChhHHHHHhhccchhhhhc
Q 013265 4 EGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLW 42 (446)
Q Consensus 4 ~~D~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw 42 (446)
..|.|+.||+|++.+||++|+.+|.++++.|||+|+++.
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII 49 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999998653
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.45 E-value=3.7e-05 Score=65.63 Aligned_cols=134 Identities=13% Similarity=0.032 Sum_probs=61.0
Q ss_pred ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265 153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY 232 (446)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~ 232 (446)
.+++|+.|.|.++.++. +..+... +|+|+.|++.++.... +..-..+++|+.|.++++. +..+.-
T Consensus 17 ~~~~L~~L~l~~n~l~~--i~~~~~~-~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~-l~~~~~---------- 81 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV--IENLGAT-LDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNR-ICRIGE---------- 81 (176)
T ss_dssp CTTSCEEEECTTSCCCS--CCCGGGG-TTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSC-CCEECS----------
T ss_pred CcCCceEEEeeCCCCch--hHHhhhc-CCCCCEEECCCCCCCc-ccccccCCCCCEEECCCCc-ccccCc----------
Confidence 45566677766665552 2222333 4577777776664322 2111223455555555554 332210
Q ss_pred cccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEE
Q 013265 233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEII 312 (446)
Q Consensus 233 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 312 (446)
..+.++++|+.++++.+.+... .. ...+..+++|+.|.+.++.+... . ......+..+++|+.|++.
T Consensus 82 ------~~~~~l~~L~~L~L~~N~i~~~-~~-~~~l~~l~~L~~L~l~~N~i~~~----~-~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 82 ------GLDQALPDLTELILTNNSLVEL-GD-LDPLASLKSLTYLCILRNPVTNK----K-HYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp ------CHHHHCTTCCEEECCSCCCCCG-GG-GGGGGGCTTCCEEECCSSGGGGS----T-THHHHHHHHCTTCSEETTE
T ss_pred ------chhhcCCCCCEEECCCCcCCcc-hh-hHhhhcCCCCCEEEecCCCCCCc----H-hHHHHHHHHCCccceeCCC
Confidence 1123455555555554422110 10 02345666677776666433110 0 0000013345667777666
Q ss_pred ec
Q 013265 313 GT 314 (446)
Q Consensus 313 ~~ 314 (446)
.+
T Consensus 149 ~n 150 (176)
T 1a9n_A 149 KV 150 (176)
T ss_dssp EC
T ss_pred cC
Confidence 65
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.43 E-value=6.8e-05 Score=74.41 Aligned_cols=12 Identities=8% Similarity=0.019 Sum_probs=7.4
Q ss_pred CCCcEEEEEeee
Q 013265 367 RSIRVVELLGFV 378 (446)
Q Consensus 367 ~~L~~v~i~~~~ 378 (446)
.+|+++.+.+-.
T Consensus 317 ~~L~~L~Ls~N~ 328 (454)
T 1jl5_A 317 PSLEELNVSNNK 328 (454)
T ss_dssp TTCCEEECCSSC
T ss_pred CcCCEEECCCCc
Confidence 467777666543
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.42 E-value=7.1e-05 Score=76.24 Aligned_cols=132 Identities=19% Similarity=0.141 Sum_probs=75.6
Q ss_pred cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE
Q 013265 120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV 199 (446)
Q Consensus 120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i 199 (446)
.+++.|.+.... .-.+|..+ +++|++|+|+++.++. +. .. +++|+.|++.++.......+
T Consensus 59 ~~L~~L~Ls~n~---------L~~lp~~l-----~~~L~~L~Ls~N~l~~--ip---~~-l~~L~~L~Ls~N~l~~ip~l 118 (571)
T 3cvr_A 59 NQFSELQLNRLN---------LSSLPDNL-----PPQITVLEITQNALIS--LP---EL-PASLEYLDACDNRLSTLPEL 118 (571)
T ss_dssp TTCSEEECCSSC---------CSCCCSCC-----CTTCSEEECCSSCCSC--CC---CC-CTTCCEEECCSSCCSCCCCC
T ss_pred CCccEEEeCCCC---------CCccCHhH-----cCCCCEEECcCCCCcc--cc---cc-cCCCCEEEccCCCCCCcchh
Confidence 477777764332 11355433 3678888888777663 22 45 78888888887754331121
Q ss_pred eCCcCccceEEeeccCCCCeEEEECCceeEEEEcccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEE
Q 013265 200 SGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKL 279 (446)
Q Consensus 200 ~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L 279 (446)
. .+|++|.++++. +..+.-..++|+.|++.++........+++|+.++++.+.+.. .+ . +. ++|+.|+|
T Consensus 119 -~--~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp---~-l~--~~L~~L~L 187 (571)
T 3cvr_A 119 -P--ASLKHLDVDNNQ-LTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LP---E-LP--ESLEALDV 187 (571)
T ss_dssp -C--TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC---C-CC--TTCCEEEC
T ss_pred -h--cCCCEEECCCCc-CCCCCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cc---h-hh--CCCCEEEC
Confidence 1 378888887765 3333225577777777776433222245677777776653322 11 2 11 67777777
Q ss_pred eec
Q 013265 280 DTC 282 (446)
Q Consensus 280 ~~~ 282 (446)
+++
T Consensus 188 s~N 190 (571)
T 3cvr_A 188 STN 190 (571)
T ss_dssp CSS
T ss_pred cCC
Confidence 764
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.42 E-value=3.1e-05 Score=68.87 Aligned_cols=145 Identities=13% Similarity=0.091 Sum_probs=74.8
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee-EeCCcCccceEEeeccCCCCeEEEECCceeEEEEc
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK-VSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYS 233 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~ 233 (446)
+.++.|.|.+..++.-.....+.. +++|+.|++.++....... ....+++|+.|.++++. +..+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~-l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~------------- 96 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKK-LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENV------------- 96 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGG-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCC-------------
T ss_pred CCCCEEEcCCCcCCccCchhhhcc-CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCcc-------------
Confidence 456777777766543211123556 7777777777664221110 01122344444444433 1111
Q ss_pred ccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEe
Q 013265 234 GPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIG 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 313 (446)
.+..+.++++|+.+++..+.+..... ..+..+++|+.|+|..+.+. ...+..+..+++|++|.|..
T Consensus 97 ---~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 97 ---QHKMFKGLESLKTLMLRSNRITCVGN---DSFIGLSSVRLLSLYDNQIT--------TVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp ---CGGGGTTCSSCCEEECTTSCCCCBCT---TSSTTCTTCSEEECTTSCCC--------CBCTTTTTTCTTCCEEECCS
T ss_pred ---CHhHhcCCcCCCEEECCCCcCCeECH---hHcCCCccCCEEECCCCcCC--------EECHHHhcCCCCCCEEEecC
Confidence 12235567777777776553332222 34556778888887763221 11134456677888888877
Q ss_pred cC--CCCCHHHHHHHHh
Q 013265 314 TP--KVNDLIFCIALLE 328 (446)
Q Consensus 314 ~~--~~~~~~~l~~ll~ 328 (446)
+. ......++...++
T Consensus 163 N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 163 NPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp CCEECSGGGHHHHHHHH
T ss_pred cCCcCCCchHHHHHHHH
Confidence 74 2334445555554
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.41 E-value=7.6e-05 Score=76.03 Aligned_cols=181 Identities=14% Similarity=0.103 Sum_probs=112.3
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcc
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSG 234 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~ 234 (446)
.+|+.|+|.+..+++ +.. .- +++|+.|+|.++... .+. ..+++|+.|.++++. +..+..-..+|++|++.+
T Consensus 59 ~~L~~L~Ls~n~L~~--lp~--~l-~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~-l~~ip~l~~~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS--LPD--NL-PPQITVLEITQNALI-SLP--ELPASLEYLDACDNR-LSTLPELPASLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSC--CCS--CC-CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred CCccEEEeCCCCCCc--cCH--hH-cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCC-CCCcchhhcCCCEEECCC
Confidence 489999999887764 211 12 678999999988644 333 445899999999886 544432234999999988
Q ss_pred cccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEec
Q 013265 235 PILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGT 314 (446)
Q Consensus 235 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 314 (446)
+........+++|+.++++.+.+.. +...+++|+.|.++++.+. .++. ++ ++|+.|+|..+
T Consensus 130 N~l~~lp~~l~~L~~L~Ls~N~l~~-------lp~~l~~L~~L~Ls~N~L~---------~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 130 NQLTMLPELPALLEYINADNNQLTM-------LPELPTSLEVLSVRNNQLT---------FLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSC-------CCCCCTTCCEEECCSSCCS---------CCCC-CC--TTCCEEECCSS
T ss_pred CcCCCCCCcCccccEEeCCCCccCc-------CCCcCCCcCEEECCCCCCC---------Ccch-hh--CCCCEEECcCC
Confidence 7543212267889999998764332 2226789999999985331 1233 33 89999999988
Q ss_pred CC--CCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee
Q 013265 315 PK--VNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV 378 (446)
Q Consensus 315 ~~--~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~ 378 (446)
.- ...+.. .+....+.|+.|++..+ .+..+|.... ++.+|+.+.+.+-.
T Consensus 191 ~L~~lp~~~~--~L~~~~~~L~~L~Ls~N---------~l~~lp~~l~----~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 191 LLESLPAVPV--RNHHSEETEIFFRCREN---------RITHIPENIL----SLDPTCTIILEDNP 241 (571)
T ss_dssp CCSSCCCCC----------CCEEEECCSS---------CCCCCCGGGG----GSCTTEEEECCSSS
T ss_pred CCCchhhHHH--hhhcccccceEEecCCC---------cceecCHHHh----cCCCCCEEEeeCCc
Confidence 51 111111 23333444588888432 2223343221 35889999988754
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.39 E-value=0.00017 Score=71.58 Aligned_cols=50 Identities=24% Similarity=0.163 Sum_probs=24.8
Q ss_pred CccceEEeeccCCCCeEEEECCceeEEEEccccc---ccccCCCCCcceEEeccc
Q 013265 204 LKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPIL---PFSFRNVPNLVDASFWGC 255 (446)
Q Consensus 204 ~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~ 255 (446)
++|+.|.+.++. +..+.-..++|++|++.++.. + .+.++++|+.++++.+
T Consensus 195 ~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 195 PFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNN 247 (454)
T ss_dssp TTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCC
Confidence 455555555544 333222234566666655422 2 2445666666666554
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.39 E-value=0.00015 Score=64.70 Aligned_cols=146 Identities=18% Similarity=0.123 Sum_probs=87.7
Q ss_pred CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265 225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
++|++|++.+..+ +-.+.++++|+.+++..+.+..... ..+..+++|+.|+|+.+.+. ......+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~---~~~~~l~~L~~L~Ls~N~l~--------~l~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV---GVFDSLTQLTVLDLGTNQLT--------VLPSAVF 108 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------CCCTTTT
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh---hhcccCCCcCEEECCCCcCC--------ccChhHh
Confidence 5566666665532 2346678888888887664432222 45677889999999884331 1112335
Q ss_pred CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--ee
Q 013265 301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FV 378 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~ 378 (446)
..+++|++|.|..+.-. . +..-+..+++|+.|+++.. .+..++.- .+..+.+|+.+.+.+ +.
T Consensus 109 ~~l~~L~~L~Ls~N~l~-~---lp~~~~~l~~L~~L~L~~N---------~l~~~~~~---~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLT-E---LPRGIERLTHLTHLALDQN---------QLKSIPHG---AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECCSSCCC-S---CCTTGGGCTTCSEEECCSS---------CCCCCCTT---TTTTCTTCCEEECTTSCBC
T ss_pred CcchhhCeEeccCCccc-c---cCcccccCCCCCEEECCCC---------cCCccCHH---HHhCCCCCCEEEeeCCCcc
Confidence 67889999999887521 1 1223478899999998532 22222211 111347899999977 55
Q ss_pred cCcchH-HHHHHHHhcCccc
Q 013265 379 GHTADF-ELVMYLIFSAKLL 397 (446)
Q Consensus 379 g~~~e~-~~~~~ll~~a~~L 397 (446)
+...++ .+..++..+...+
T Consensus 173 c~c~~~~~l~~~~~~~~~~~ 192 (229)
T 3e6j_A 173 CECRDIMYLRNWVADHTSIA 192 (229)
T ss_dssp TTBGGGHHHHHHHHHCGGGE
T ss_pred CCcchhHHHHHHHHhCcccc
Confidence 555433 4555666666554
No 120
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.38 E-value=0.00015 Score=74.64 Aligned_cols=143 Identities=16% Similarity=0.113 Sum_probs=81.0
Q ss_pred CceeEEEEccccc----ccccCCCCCcceEEecccch-hhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccC
Q 013265 225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFS-AYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHD 299 (446)
Q Consensus 225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~-~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~ 299 (446)
++++.+++.+... +..+..+++++.+++..+.. ..... ..+..+++|+.|+|+++.+. ...+..
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~---~~~~~l~~L~~L~Ls~N~L~--------~l~~~~ 513 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLE--------QLSPTA 513 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTSCCC--------EECTTT
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCc---hhhhhccccCEEECCCCccC--------CcChHH
Confidence 4555555544321 23344566777777765421 11111 45567788888888774321 122445
Q ss_pred CCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccc-cCCCCcccccc-CCCcEEEEEe
Q 013265 300 IPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTI-KDQPYLSFTEL-RSIRVVELLG 376 (446)
Q Consensus 300 ~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~-p~c~~~~~~~l-~~L~~v~i~~ 376 (446)
+..+++|++|.|+.+. ..-. ...+..+++|+.|+++.. .+... |+.+. .+ ++|+++.+.+
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N---------~l~~~~~~~l~----~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLN---------HIMTSKKQELQ----HFPSSLAFLNLTQ 576 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCC----CGGGTTCTTCCEEECTTS---------CCCBCCSSCTT----CCCTTCCEEECTT
T ss_pred HcCCCCCCEEECCCCcCCCCC----hhHHhCCCCCCEEECCCC---------cCCCCCHHHHH----hhhCcCCEEEeeC
Confidence 6677888888887763 1111 113567888888888422 11111 22111 12 6799999987
Q ss_pred --eecCcchHHHHHHHHhcCc
Q 013265 377 --FVGHTADFELVMYLIFSAK 395 (446)
Q Consensus 377 --~~g~~~e~~~~~~ll~~a~ 395 (446)
|..+++-..|+.++-++..
T Consensus 577 Np~~C~C~~~~~~~wl~~~~~ 597 (635)
T 4g8a_A 577 NDFACTCEHQSFLQWIKDQRQ 597 (635)
T ss_dssp CCBCCSGGGHHHHHHHHHTTT
T ss_pred CCCcccCCcHHHHHHHHhCCC
Confidence 7777777788887755543
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.37 E-value=3.2e-05 Score=67.93 Aligned_cols=147 Identities=16% Similarity=0.053 Sum_probs=86.5
Q ss_pred cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee-EeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265 154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK-VSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY 232 (446)
Q Consensus 154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~ 232 (446)
.++|++|+|.+..+++- ....+.. +++|++|++.++....... ....+++|++|.+.++. +..+
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~------------ 91 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDE-LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSL------------ 91 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTT-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC------------
T ss_pred CCCCcEEEcCCCccCcC-Chhhhcc-cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCcc------------
Confidence 46889999988776632 1223567 8999999998874332111 11223556666665553 2211
Q ss_pred cccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEE
Q 013265 233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEII 312 (446)
Q Consensus 233 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 312 (446)
.+..+.++++|+.+++..+.+..... ..+..+++|+.|++..+.+. ......+..+++|++|.+.
T Consensus 92 ----~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 92 ----PNGVFDKLTQLKELALNTNQLQSLPD---GVFDKLTQLKDLRLYQNQLK--------SVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECC
T ss_pred ----CHhHhcCccCCCEEEcCCCcCcccCH---hHhccCCcCCEEECCCCccc--------eeCHHHhccCCCccEEEec
Confidence 11234567778888776653332222 34567888999998874321 1112235667899999998
Q ss_pred ecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265 313 GTPKVNDLIFCIALLEAAPSLYKFSLKL 340 (446)
Q Consensus 313 ~~~~~~~~~~l~~ll~~~p~L~~L~l~~ 340 (446)
.+.-. ..||+|+.|.+..
T Consensus 157 ~N~~~----------~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 157 DNPWD----------CTCPGIRYLSEWI 174 (208)
T ss_dssp SCCBC----------CCTTTTHHHHHHH
T ss_pred CCCee----------cCCCCHHHHHHHH
Confidence 87422 3467777776643
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.24 E-value=7.5e-05 Score=66.76 Aligned_cols=145 Identities=18% Similarity=0.072 Sum_probs=85.6
Q ss_pred cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265 154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY 232 (446)
Q Consensus 154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~ 232 (446)
.++|++|.|++..++.-. ...+.. +++|+.|+|.++...... .....+++|+.|.++++. +..+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~-~~~~~~-l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l------------ 103 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLE-PGVFDS-LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVL------------ 103 (229)
T ss_dssp CTTCSEEECCSSCCCCCC-TTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC------------
T ss_pred CCCCCEEEcCCCccCccC-HHHhhC-ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCcc------------
Confidence 378899999888776421 123567 889999999887542111 111233556666665553 2211
Q ss_pred cccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEE
Q 013265 233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEII 312 (446)
Q Consensus 233 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 312 (446)
.+..+..+++|+.+++..+.+.. +..-+..+++|+.|++.+..+. ......+..+++|++|.+.
T Consensus 104 ----~~~~~~~l~~L~~L~Ls~N~l~~----lp~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 104 ----PSAVFDRLVHLKELFMCCNKLTE----LPRGIERLTHLTHLALDQNQLK--------SIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCCS----CCTTGGGCTTCSEEECCSSCCC--------CCCTTTTTTCTTCCEEECT
T ss_pred ----ChhHhCcchhhCeEeccCCcccc----cCcccccCCCCCEEECCCCcCC--------ccCHHHHhCCCCCCEEEee
Confidence 11234567788888887654332 1134478889999999884331 1112346678899999998
Q ss_pred ecCCCC---CHHHHHHHHhh
Q 013265 313 GTPKVN---DLIFCIALLEA 329 (446)
Q Consensus 313 ~~~~~~---~~~~l~~ll~~ 329 (446)
.+.-.. ++..+...+..
T Consensus 168 ~N~~~c~c~~~~~l~~~~~~ 187 (229)
T 3e6j_A 168 GNPWDCECRDIMYLRNWVAD 187 (229)
T ss_dssp TSCBCTTBGGGHHHHHHHHH
T ss_pred CCCccCCcchhHHHHHHHHh
Confidence 875222 34455555543
No 123
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.24 E-value=0.00016 Score=71.11 Aligned_cols=38 Identities=29% Similarity=0.521 Sum_probs=35.6
Q ss_pred cCCcCCCCChHHHHHHHhCCChhHHHHHhhccchhhhh
Q 013265 4 EGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYL 41 (446)
Q Consensus 4 ~~D~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~l 41 (446)
..|.|+.||+|++.+||++|+.+|+++++.|||+|+.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 36999999999999999999999999999999999863
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.24 E-value=0.00025 Score=62.12 Aligned_cols=103 Identities=17% Similarity=0.072 Sum_probs=65.9
Q ss_pred CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265 225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
++|++|++.+... +..+.++++|+.+++..+.+..... ..+..+++|+.|++..+.+. ...+..+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~--------~~~~~~~ 120 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN---GVFDKLTQLKELALNTNQLQ--------SLPDGVF 120 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------CCCTTTT
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH---hHhcCccCCCEEEcCCCcCc--------ccCHhHh
Confidence 5566666555422 1235678889999997664332222 45678999999999884321 1112335
Q ss_pred CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
..+++|++|++..+.-.. + ....+..+++|+.|++...
T Consensus 121 ~~l~~L~~L~l~~N~l~~-~--~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 121 DKLTQLKDLRLYQNQLKS-V--PDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTCTTCCEEECCSSCCSC-C--CTTTTTTCTTCCEEECCSC
T ss_pred ccCCcCCEEECCCCccce-e--CHHHhccCCCccEEEecCC
Confidence 678999999999874111 1 1134678999999999654
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.19 E-value=0.00013 Score=69.69 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=45.6
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE--eCCcCccceEEeeccCCCCeEE----EECCcee
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV--SGPSLKLKHLKLNKLDNLKDLQ----LHAPNLL 228 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~~~~l~~~~----i~~p~L~ 228 (446)
+++++|+|++..++.- -...+++ +++|++|+|.++...+.+.. -..+++++++.+.++..+..+. -..++|+
T Consensus 30 ~~l~~L~Ls~N~i~~i-~~~~f~~-l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVI-QKGAFSG-FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSEE-CTTSSTT-CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCCc-CHHHHcC-CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 5677788877665421 0112566 78888888887765443321 1233456655555554455542 1347777
Q ss_pred EEEEcccc
Q 013265 229 SFEYSGPI 236 (446)
Q Consensus 229 ~l~~~~~~ 236 (446)
+|.+.+..
T Consensus 108 ~L~l~~n~ 115 (350)
T 4ay9_X 108 YLLISNTG 115 (350)
T ss_dssp EEEEEEEC
T ss_pred cccccccc
Confidence 77776653
No 126
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.15 E-value=0.00099 Score=56.44 Aligned_cols=105 Identities=9% Similarity=0.140 Sum_probs=51.6
Q ss_pred CceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHh---hCCCceEEEEEEecccccccc
Q 013265 273 QLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLE---AAPSLYKFSLKLVSQYDYESY 349 (446)
Q Consensus 273 ~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~---~~p~L~~L~l~~~~~~~~~~~ 349 (446)
+|+.|++++|.+. ..++ ..+..+++|++|+|..|....+ .++..+-+ .||+|+.|+|+.+. ..+ +
T Consensus 62 ~L~~LDLs~~~It-------d~GL-~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~--~IT-D 129 (176)
T 3e4g_A 62 KIQAIDATDSCIM-------SIGF-DHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCG--NVT-D 129 (176)
T ss_dssp CEEEEEEESCCCC-------GGGG-GGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCT--TCC-H
T ss_pred eEeEEeCcCCCcc-------HHHH-HHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCC--cCC-H
Confidence 4666666664321 1111 2234566777777777653333 24555544 25677777774431 122 2
Q ss_pred cccccccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccc
Q 013265 350 ESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLL 397 (446)
Q Consensus 350 ~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L 397 (446)
..+..+..| .+|+.+.+.++.+..+.-..+..+-++.|.+
T Consensus 130 ~Gl~~L~~~--------~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l 169 (176)
T 3e4g_A 130 KGIIALHHF--------RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169 (176)
T ss_dssp HHHHHGGGC--------TTCCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred HHHHHHhcC--------CCCCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence 222223333 5677777777755443322333344444443
No 127
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.14 E-value=0.0001 Score=72.36 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=35.0
Q ss_pred cCCcCCCCChH----HHHHHHhCCChhHHHHHhhccchhhh
Q 013265 4 EGDHINELPDD----ILVNILSRLTMKEAVRTSIISSRWRY 40 (446)
Q Consensus 4 ~~D~is~LPd~----iL~~ILs~Lp~kd~~rts~lSkrWr~ 40 (446)
..|.|+.||+| |+.+||++|+.++.++++.|||+|++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 36899999999 99999999999999999999999994
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.14 E-value=0.0018 Score=61.10 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=35.8
Q ss_pred ccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCce-EEEE
Q 013265 269 IFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLY-KFSL 338 (446)
Q Consensus 269 ~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~-~L~l 338 (446)
..+++|+.|+|....+ . ..-...+..+.+|++|.|...-. .+. ...+.+|++|+ .+.+
T Consensus 223 ~~~~~L~~l~L~~n~i-------~-~I~~~aF~~~~~L~~l~l~~ni~--~I~--~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 223 DYMPNLVSLDISKTNA-------T-TIPDFTFAQKKYLLKIKLPHNLK--TIG--QRVFSNCGRLAGTLEL 281 (329)
T ss_dssp HHCTTCCEEECTTBCC-------C-EECTTTTTTCTTCCEEECCTTCC--EEC--TTTTTTCTTCCEEEEE
T ss_pred HhcCCCeEEECCCCCc-------c-eecHhhhhCCCCCCEEECCcccc--eeh--HHHhhCChhccEEEEE
Confidence 3588899999876311 1 11123466788899988866521 110 11357889998 8888
No 129
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.05 E-value=0.00024 Score=73.12 Aligned_cols=146 Identities=16% Similarity=0.077 Sum_probs=66.3
Q ss_pred cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce--eEeCCcCccceEEeeccCCCCeEE----EECCce
Q 013265 154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLDNLKDLQ----LHAPNL 227 (446)
Q Consensus 154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~~l~~~~----i~~p~L 227 (446)
..+|+.|.+........ ...+.. ++.|+.+.+..+...... .....+.+++.+.+..+. +..+. -..++|
T Consensus 396 ~~~L~~L~~~~~~~~~~--~~~~~~-l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 396 TISLKYLDLSFNGVITM--SSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSL 471 (635)
T ss_dssp CSCCCEEECCSCSEEEE--CSCCTT-CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTC
T ss_pred hhhhhhhhccccccccc--cccccc-cccccchhhhhccccccccccccccccccccccccccc-cccccccccccchhh
Confidence 45666666654432211 111345 777777777654332211 111122445555554443 11110 123556
Q ss_pred eEEEEcccc-----cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265 228 LSFEYSGPI-----LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE 302 (446)
Q Consensus 228 ~~l~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
+.|++.+.. .+..+..+++|+.++++.+.+....+ ..+..+++|+.|.|+++.+. ...+..+..
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~---~~f~~l~~L~~L~Ls~N~l~--------~l~~~~~~~ 540 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP---TAFNSLSSLQVLNMSHNNFF--------SLDTFPYKC 540 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTSCCC--------BCCCGGGTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh---HHHcCCCCCCEEECCCCcCC--------CCChhHHhC
Confidence 666555442 12344555666666665543322222 33455666666666553221 011122344
Q ss_pred CCcccEEEEEec
Q 013265 303 MCNLKHLEIIGT 314 (446)
Q Consensus 303 ~~~L~~L~L~~~ 314 (446)
+++|+.|+|+.+
T Consensus 541 l~~L~~L~Ls~N 552 (635)
T 4g8a_A 541 LNSLQVLDYSLN 552 (635)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEECCCC
Confidence 556666666555
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.98 E-value=0.00062 Score=60.28 Aligned_cols=126 Identities=18% Similarity=0.109 Sum_probs=65.3
Q ss_pred ccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhccccc-ccCCCCCCcccEEEEEecCCCC
Q 013265 240 SFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRY-LHDIPEMCNLKHLEIIGTPKVN 318 (446)
Q Consensus 240 ~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~ 318 (446)
.+.++++|+.+++..+.+..... ..+..+++|+.|+|++..+. .+ ...+..+++|++|.|..+.-..
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~---~~~~~l~~L~~L~Ls~N~l~---------~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAP---DAFQGLRSLNSLVLYGNKIT---------ELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECT---TTTTTCSSCCEEECCSSCCC---------CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred HhhCCCCCCEEECCCCcCCCcCH---HHhhCCcCCCEEECCCCcCC---------ccCHhHccCCCCCCEEECCCCCCCE
Confidence 34556666666665543322212 34556677777777763221 11 1224556777777777764111
Q ss_pred CHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHh
Q 013265 319 DLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIF 392 (446)
Q Consensus 319 ~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~ 392 (446)
-. ...+..+++|+.|++... .+..++.- .+..+.+|+++.+.+ +..+..-..+..++-.
T Consensus 119 ~~---~~~~~~l~~L~~L~L~~N---------~l~~~~~~---~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~ 179 (220)
T 2v9t_B 119 LR---VDAFQDLHNLNLLSLYDN---------KLQTIAKG---TFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT 179 (220)
T ss_dssp CC---TTTTTTCTTCCEEECCSS---------CCSCCCTT---TTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred eC---HHHcCCCCCCCEEECCCC---------cCCEECHH---HHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHh
Confidence 00 123566788888887432 11111210 011236788888876 5555555555555443
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.95 E-value=0.00082 Score=59.48 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=13.5
Q ss_pred CCCcEEEEEe--eecCcchHHHHHHHH
Q 013265 367 RSIRVVELLG--FVGHTADFELVMYLI 391 (446)
Q Consensus 367 ~~L~~v~i~~--~~g~~~e~~~~~~ll 391 (446)
.+|+++.+.+ +.+......+.+++-
T Consensus 153 ~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 153 HSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp TTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred CCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 5666666655 445544444544443
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.88 E-value=7.3e-05 Score=65.13 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=8.6
Q ss_pred cCCCCCcceEEeccc
Q 013265 241 FRNVPNLVDASFWGC 255 (446)
Q Consensus 241 ~~~~~~L~~l~l~~~ 255 (446)
+.++++|+.+++..+
T Consensus 136 l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 136 LAALDKLEDLLLAGN 150 (198)
T ss_dssp HTTTTTCSEEEECSC
T ss_pred HhcCCCCCEEEecCC
Confidence 445566666666554
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.79 E-value=0.00081 Score=64.41 Aligned_cols=149 Identities=16% Similarity=0.125 Sum_probs=83.2
Q ss_pred CCCcceeeEeccCCCCce--eEeCCcCccceEEeeccCCCCeEEE----ECCceeEEEEccccc----ccccCCCCCcce
Q 013265 180 CPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLLSFEYSGPIL----PFSFRNVPNLVD 249 (446)
Q Consensus 180 cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~~l~~~~~~~----~~~~~~~~~L~~ 249 (446)
.+.++.|+|.++...... .+...+++|+.|.+.++. +..+.. ..++|++|++++... +..+.++++|+.
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 445888888887532211 111144788888888776 555432 247788888877643 234567788888
Q ss_pred EEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhh
Q 013265 250 ASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEA 329 (446)
Q Consensus 250 l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~ 329 (446)
+++..+.+..... ..+..+++|+.|.|.++.+... . ......+..+++|++|+|..+.-.. +. ...+..
T Consensus 117 L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~l----~-~~~~~~~~~l~~L~~L~L~~N~l~~-l~--~~~~~~ 185 (361)
T 2xot_A 117 LLLYNNHIVVVDR---NAFEDMAQLQKLYLSQNQISRF----P-VELIKDGNKLPKLMLLDLSSNKLKK-LP--LTDLQK 185 (361)
T ss_dssp EECCSSCCCEECT---TTTTTCTTCCEEECCSSCCCSC----C-GGGTC----CTTCCEEECCSSCCCC-CC--HHHHHH
T ss_pred EECCCCcccEECH---HHhCCcccCCEEECCCCcCCee----C-HHHhcCcccCCcCCEEECCCCCCCc-cC--HHHhhh
Confidence 8887664332222 4456778888888877433210 0 0001111456788888887774111 10 123445
Q ss_pred CCC--ceEEEEEE
Q 013265 330 APS--LYKFSLKL 340 (446)
Q Consensus 330 ~p~--L~~L~l~~ 340 (446)
.|+ |+.|++..
T Consensus 186 l~~~~l~~l~l~~ 198 (361)
T 2xot_A 186 LPAWVKNGLYLHN 198 (361)
T ss_dssp SCHHHHTTEECCS
T ss_pred ccHhhcceEEecC
Confidence 555 36677754
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.77 E-value=4.1e-05 Score=66.76 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=21.5
Q ss_pred CCCCCcccEEEEEecCCCCC-------HHHHHHHHhhCCCceEEE
Q 013265 300 IPEMCNLKHLEIIGTPKVND-------LIFCIALLEAAPSLYKFS 337 (446)
Q Consensus 300 ~~~~~~L~~L~L~~~~~~~~-------~~~l~~ll~~~p~L~~L~ 337 (446)
+..+++|++|.+..+.-... ......++..+|+|+.|+
T Consensus 136 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred HhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 34556677777666531000 122345678888888775
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.74 E-value=0.0023 Score=60.87 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=31.8
Q ss_pred cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee--EeCCcCccceEEeeccC
Q 013265 152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK--VSGPSLKLKHLKLNKLD 215 (446)
Q Consensus 152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~~~ 215 (446)
.++++|++|+|++..+.+.--...+.+ ++.|+++...++..+..+. .-..+++|+.|.+.++.
T Consensus 51 ~~l~~L~~L~Ls~N~i~~~i~~~~f~~-L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 51 SGFGDLEKIEISQNDVLEVIEADVFSN-LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp TTCTTCCEEEEECCTTCCEECTTSBCS-CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred cCCCCCCEEECcCCCCCCccChhHhhc-chhhhhhhcccCCcccccCchhhhhccccccccccccc
Confidence 456777777777655322100112445 6666665555544444331 11233566666666654
No 136
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.67 E-value=0.0014 Score=56.36 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=36.4
Q ss_pred hhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEE--EecC-CCCCHHHHHHHHhhCCCceEEEEE
Q 013265 266 QHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEI--IGTP-KVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 266 ~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L--~~~~-~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
..+...++|+.|+|+++.+... ....+...+...++|++|+| ..+. .......+...++.+++|++|++.
T Consensus 87 ~~L~~n~~L~~L~L~~N~i~~~----g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 87 EMLKVNNTLKSLNVESNFISGS----GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHHCSSCCEEECCSSCCCHH----HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHhCCCcCEEECcCCcCCHH----HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 4455556677777666433211 11112223344456666666 3332 222234566677777777777774
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.60 E-value=0.0019 Score=60.83 Aligned_cols=80 Identities=16% Similarity=0.069 Sum_probs=50.0
Q ss_pred CCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCccc-EEEEEecCCCCCHH
Q 013265 243 NVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLK-HLEIIGTPKVNDLI 321 (446)
Q Consensus 243 ~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~ 321 (446)
.+++|+++++..+....... ..+..+++|+.|.+... + . ..-...+..+++|+ .+.+...-..-.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~---~aF~~~~~L~~l~l~~n-i-------~-~I~~~aF~~~~~L~~~l~l~~~l~~I~-- 289 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPD---FTFAQKKYLLKIKLPHN-L-------K-TIGQRVFSNCGRLAGTLELPASVTAIE-- 289 (329)
T ss_dssp HCTTCCEEECTTBCCCEECT---TTTTTCTTCCEEECCTT-C-------C-EECTTTTTTCTTCCEEEEECTTCCEEC--
T ss_pred hcCCCeEEECCCCCcceecH---hhhhCCCCCCEEECCcc-c-------c-eehHHHhhCChhccEEEEEcccceEEc--
Confidence 37788888887643332223 55678889999988762 1 1 11133456778888 888866321100
Q ss_pred HHHHHHhhCCCceEEEE
Q 013265 322 FCIALLEAAPSLYKFSL 338 (446)
Q Consensus 322 ~l~~ll~~~p~L~~L~l 338 (446)
...+.+|++|+++++
T Consensus 290 --~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 290 --FGAFMGCDNLRYVLA 304 (329)
T ss_dssp --TTTTTTCTTEEEEEE
T ss_pred --hhhhhCCccCCEEEe
Confidence 123678999999997
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.59 E-value=0.00059 Score=69.56 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=78.0
Q ss_pred CCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE---EECCceeEEEEcccc---cccccCCCCCcceEEecc
Q 013265 181 PVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ---LHAPNLLSFEYSGPI---LPFSFRNVPNLVDASFWG 254 (446)
Q Consensus 181 p~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~---i~~p~L~~l~~~~~~---~~~~~~~~~~L~~l~l~~ 254 (446)
..|+.|++.++....... ...+++|+.|.++++. +..+. -..++|+.|++++.. ++ .++++++|+.++++.
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred cCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 368899998875443223 3345789999998876 54331 135889999988773 34 678899999999987
Q ss_pred cchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEE
Q 013265 255 CFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEI 311 (446)
Q Consensus 255 ~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 311 (446)
+.+.... ....+..+++|+.|.|+++.+... . .........+++|+.|.+
T Consensus 518 N~l~~~~--~p~~l~~l~~L~~L~L~~N~l~~~----~-~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSA--AIQPLVSCPRLVLLNLQGNSLCQE----E-GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSS--TTGGGGGCTTCCEEECTTSGGGGS----S-SCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCC--CcHHHhcCCCCCEEEecCCcCCCC----c-cHHHHHHHHCcccCccCC
Confidence 6443321 025677899999999998543211 0 001111223788888853
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.56 E-value=0.0029 Score=54.54 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=43.7
Q ss_pred CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265 225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
++|++|++.+..+ +..+.++++|+.+++..+.+..... ..+..+++|+.|++.+..+. ...+..+
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~--------~~~~~~~ 122 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN---KMFLGLHQLKTLNLYDNQIS--------CVMPGSF 122 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS---SSSTTCTTCCEEECCSSCCC--------EECTTSS
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCCcCC--------eeCHHHh
Confidence 4555555554422 2345566777777776553332222 33456677777777763221 1123445
Q ss_pred CCCCcccEEEEEecC
Q 013265 301 PEMCNLKHLEIIGTP 315 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~ 315 (446)
..+++|++|.+..+.
T Consensus 123 ~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 123 EHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCTTCCEEECTTCC
T ss_pred hcCCCCCEEEeCCCC
Confidence 566777777776664
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.54 E-value=0.0006 Score=65.65 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=95.3
Q ss_pred CccceEEeeccCCCCeEE---------EECCceeEEEEcccccc-----cccCCCCCcceEEecccchhh-hhhhhhhhh
Q 013265 204 LKLKHLKLNKLDNLKDLQ---------LHAPNLLSFEYSGPILP-----FSFRNVPNLVDASFWGCFSAY-IAKNLCQHS 268 (446)
Q Consensus 204 ~~L~~L~i~~~~~l~~~~---------i~~p~L~~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~-~~~~l~~~l 268 (446)
+.|++|.+++|. +.... -..++|++|+++++... .....+++|+.+++..+.+.. ....+...+
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 579999999887 33211 12368999999887542 112235678889987765432 223333444
Q ss_pred -ccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEeccccc
Q 013265 269 -IFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLVSQYDY 346 (446)
Q Consensus 269 -~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~ 346 (446)
...++|+.|+|.++.+... ....+...+...++|++|+|..+. .......+...+..+++|++|++..+ ..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~----~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N---~i 223 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAA----GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN---GA 223 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHH----HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS---CC
T ss_pred HhcCCccceeeCCCCCCChH----HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC---CC
Confidence 3578899999998654211 111222334567889999998875 22223456677888899999998543 32
Q ss_pred ccccccccccCCCCccccccCCCcEEEEEeee
Q 013265 347 ESYESVKTIKDQPYLSFTELRSIRVVELLGFV 378 (446)
Q Consensus 347 ~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~ 378 (446)
.+.+. ..+...+ ..+.+|+++.+.+..
T Consensus 224 ~~~g~-~~l~~~L----~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 224 GDTAA-LALARAA----REHPSLELLHLYFNE 250 (372)
T ss_dssp CHHHH-HHHHHHH----HHCSSCCEEECTTSS
T ss_pred CHHHH-HHHHHHH----HhCCCCCEEeccCCC
Confidence 22211 1111100 012679999887654
No 141
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.41 E-value=0.00064 Score=65.13 Aligned_cols=125 Identities=14% Similarity=0.038 Sum_probs=66.9
Q ss_pred ccccceEEEEEEeChHHHHHHHh-cCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCcee
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLC-YCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLL 228 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~-~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~ 228 (446)
+.++.|+|++..++.-.. ..+. + +++|+.|.|.++...... .....+++|++|.++++. +..+.- ..++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~-~~~~~~-l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRA-EWTPTR-LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCCCEECT-TSSSSC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCCCCccCh-hhhhhc-ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence 346667776665543211 1133 5 777777777666432111 011233567777777665 444422 236777
Q ss_pred EEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeec
Q 013265 229 SFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTC 282 (446)
Q Consensus 229 ~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~ 282 (446)
.|++.+..+ +..+.++++|+.+++..+.+.........-+..+++|+.|+|.+.
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 777776643 234667788888888765433222211111156788888888774
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.33 E-value=0.0039 Score=53.81 Aligned_cols=78 Identities=17% Similarity=0.094 Sum_probs=40.2
Q ss_pred cCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC--CCC
Q 013265 241 FRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP--KVN 318 (446)
Q Consensus 241 ~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~ 318 (446)
+.++++|+.++++.+.+..... ..+..+++|+.|.|.+..+. ......+..+++|++|.+..+. -..
T Consensus 74 f~~l~~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLRCIPP---RTFDGLKSLRLLSLHGNDIS--------VVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECCSSCCC--------BCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCCCCCCEEECCCCccCEeCH---HHhCCCCCCCEEECCCCCCC--------eeChhhhhcCccccEEEeCCCCeecCC
Confidence 3444555555554432222211 33456677777777763221 0111234566788888887764 234
Q ss_pred CHHHHHHHHhh
Q 013265 319 DLIFCIALLEA 329 (446)
Q Consensus 319 ~~~~l~~ll~~ 329 (446)
+..++...++.
T Consensus 143 ~l~~l~~~~~~ 153 (193)
T 2wfh_A 143 NMQWLSDWVKS 153 (193)
T ss_dssp GGHHHHHHHHH
T ss_pred cCHHHHHHHHh
Confidence 44556655554
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.23 E-value=0.0029 Score=54.25 Aligned_cols=127 Identities=11% Similarity=0.098 Sum_probs=75.7
Q ss_pred hhhhhccCCCceEEEEeec-ccccccchhcccccccCCCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 264 LCQHSIFLVQLHTLKLDTC-HLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 264 l~~~l~~l~~l~~L~L~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
+..++...++|++|.|..+ .+... ....+...+...++|++|+|..+. .......+...++..++|++|+|...
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~----g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVP----TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHH----HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHH----HHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4467777888888888875 43211 111222334556788888888775 33334567778888899999988432
Q ss_pred cccccccccc--c-ccccCCCCccccccCCCcEEEE--Eeee-cCcchHHHHHHHHhcCccccceEEecCC
Q 013265 342 SQYDYESYES--V-KTIKDQPYLSFTELRSIRVVEL--LGFV-GHTADFELVMYLIFSAKLLEKIIIDPCP 406 (446)
Q Consensus 342 ~~~~~~~~~~--~-~~~p~c~~~~~~~l~~L~~v~i--~~~~-g~~~e~~~~~~ll~~a~~Le~l~i~~~~ 406 (446)
...+.+. + ..+..+ .+|+++.+ .+-. |.+....+++ .+++.+.|+++.+....
T Consensus 104 ---~i~~~g~~~l~~~L~~n--------~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 ---FISGSGILALVEALQSN--------TSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp ---CCCHHHHHHHHHGGGGC--------SSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred ---cCCHHHHHHHHHHHHhC--------CCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCC
Confidence 3332221 1 112222 67999999 4433 3333334444 44666789999886543
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.19 E-value=0.0025 Score=64.90 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=10.6
Q ss_pred HHHHhcCCCCcceee
Q 013265 173 EHLLCYCCPVLEVLN 187 (446)
Q Consensus 173 ~~ll~~~cp~Le~L~ 187 (446)
...+.. +++|+.|+
T Consensus 402 ~~~l~~-l~~L~~L~ 415 (567)
T 1dce_A 402 KETLQY-FSTLKAVD 415 (567)
T ss_dssp HHHHHH-HHHHHHHC
T ss_pred HHHHHH-HHhcccCc
Confidence 345677 88899888
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.04 E-value=0.0021 Score=55.41 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=37.4
Q ss_pred ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccC
Q 013265 155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLD 215 (446)
Q Consensus 155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~ 215 (446)
++|++|.|.+..++.-.-...+.. +++|++|+|.++...... .....+++|+.|.++++.
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGR-LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGG-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCEEECCCCcCCccCCcccccc-CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 488888888877654322223567 889999999887543321 111233567777777665
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.04 E-value=0.0075 Score=50.96 Aligned_cols=64 Identities=19% Similarity=0.101 Sum_probs=30.7
Q ss_pred cCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC
Q 013265 241 FRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP 315 (446)
Q Consensus 241 ~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 315 (446)
+.++++|+.+++..+.+..... ..+..+++|+.|++..+.+. ......+..+++|++|.+..+.
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPN---GVFDKLTQLKELALDTNQLK--------SVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCccCEEECCCCCccccCH---HHhhCCcccCEEECcCCcce--------EeCHHHhcCCcccCEEEecCCC
Confidence 3455666666665443221111 33455666666666653221 0111123445666666666654
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.98 E-value=0.0037 Score=65.70 Aligned_cols=110 Identities=18% Similarity=0.113 Sum_probs=51.9
Q ss_pred HHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcccccccccCCCCCcceEEec
Q 013265 174 HLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFW 253 (446)
Q Consensus 174 ~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~ 253 (446)
..+.. ++.|+.|+|.++.......-...+++|++|.++++. +..+ +-.+.++++|+.++++
T Consensus 218 ~~~~~-l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~l-----------------p~~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 218 DSKYD-DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTEL-----------------PAEIKNLSNLRVLDLS 278 (727)
T ss_dssp ----C-CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCC-----------------CGGGGGGTTCCEEECT
T ss_pred hhhcc-CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-Cccc-----------------ChhhhCCCCCCEEeCc
Confidence 34556 777777777776543211101123556666665554 2211 2234455555555555
Q ss_pred ccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC
Q 013265 254 GCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP 315 (446)
Q Consensus 254 ~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 315 (446)
.+.+.. +..-+..+++|+.|.|..+.+ ..++..+..+++|+.|+|..+.
T Consensus 279 ~N~l~~----lp~~~~~l~~L~~L~L~~N~l---------~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 279 HNRLTS----LPAELGSCFQLKYFYFFDNMV---------TTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TSCCSS----CCSSGGGGTTCSEEECCSSCC---------CCCCSSTTSCTTCCCEECTTSC
T ss_pred CCcCCc----cChhhcCCCCCCEEECCCCCC---------CccChhhhcCCCccEEeCCCCc
Confidence 443221 113344556666666665321 1233345556666666666553
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.57 E-value=0.011 Score=49.81 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=51.5
Q ss_pred hccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccc
Q 013265 268 SIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYE 347 (446)
Q Consensus 268 l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~ 347 (446)
+..+++|+.|++.++.+. ...+..+..+++|++|.+..+.-..- ....+..+++|+.|++...
T Consensus 48 ~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~l~~N------ 110 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQ--------SLPDGVFDKLTKLTILYLHENKLQSL---PNGVFDKLTQLKELALDTN------ 110 (177)
T ss_dssp TTTCTTCSEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSS------
T ss_pred hcCcccccEEECCCCcce--------EeChhHccCCCccCEEECCCCCcccc---CHHHhhCCcccCEEECcCC------
Confidence 445566666666653221 01112234566777777766531110 0113456777888777432
Q ss_pred cccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHhcCc
Q 013265 348 SYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIFSAK 395 (446)
Q Consensus 348 ~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~~a~ 395 (446)
.+..+|... +..+.+|+++.+.+ +.+....+..+...+.+..
T Consensus 111 ---~l~~~~~~~---~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~ 154 (177)
T 2o6r_A 111 ---QLKSVPDGI---FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 154 (177)
T ss_dssp ---CCSCCCTTT---TTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTG
T ss_pred ---cceEeCHHH---hcCCcccCEEEecCCCeeccCccHHHHHHHHhhCc
Confidence 111222211 11236788888876 4455555555554455443
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.50 E-value=0.01 Score=51.07 Aligned_cols=102 Identities=12% Similarity=0.032 Sum_probs=50.3
Q ss_pred hccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccc
Q 013265 268 SIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYE 347 (446)
Q Consensus 268 l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~ 347 (446)
+..+++|+.|+++...+. ...+..+..+++|++|.|..+.-..-. ...+...++|+.|++...
T Consensus 50 ~~~l~~L~~L~Ls~N~i~--------~i~~~~f~~l~~L~~L~Ls~N~l~~i~---~~~f~~l~~L~~L~L~~N------ 112 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNRIS--------TLSNQSFSNMTQLLTLILSYNRLRCIP---PRTFDGLKSLRLLSLHGN------ 112 (193)
T ss_dssp GGGCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCBCC---TTTTTTCTTCCEEECCSS------
T ss_pred hhcccCCCEEECCCCcCC--------EeCHhHccCCCCCCEEECCCCccCEeC---HHHhCCCCCCCEEECCCC------
Confidence 445666666666653221 111223455666777776665311000 112456677777777432
Q ss_pred cccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHh
Q 013265 348 SYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIF 392 (446)
Q Consensus 348 ~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~ 392 (446)
.+..++.- .+..+.+|+.+.+.+ +.++..-..+..++-.
T Consensus 113 ---~l~~~~~~---~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 113 ---DISVVPEG---AFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp ---CCCBCCTT---TTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred ---CCCeeChh---hhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence 11122221 111346778887776 5555555556555544
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.20 E-value=0.026 Score=47.35 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=61.3
Q ss_pred CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265 225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
++|++|++.+..+ +-.+.++++|+.+++..+.+..... ..+..+++|+.|.|....+. ...+..+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L~~N~l~--------~~~~~~~ 98 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA---GVFDKLTQLTQLSLNDNQLK--------SIPRGAF 98 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------CCCTTTT
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh---hhccCCCCCCEEECCCCccC--------EeCHHHh
Confidence 5666666665532 3346678888888887764443222 45577889999998874321 1112245
Q ss_pred CCCCcccEEEEEecCC---CCCHHHHHHHHhhCCCce
Q 013265 301 PEMCNLKHLEIIGTPK---VNDLIFCIALLEAAPSLY 334 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~~---~~~~~~l~~ll~~~p~L~ 334 (446)
..+++|++|.|..+.- -.++..+...++..+.+.
T Consensus 99 ~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp TTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred cCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence 6778899999988752 123556666666665443
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.09 E-value=0.04 Score=53.33 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=18.3
Q ss_pred CCCCCCcccEEEEEecCCC----CCHHHHHHHHhhCCCceEEEE
Q 013265 299 DIPEMCNLKHLEIIGTPKV----NDLIFCIALLEAAPSLYKFSL 338 (446)
Q Consensus 299 ~~~~~~~L~~L~L~~~~~~----~~~~~l~~ll~~~p~L~~L~l 338 (446)
.+..+++|+.+.+...... ..+ -...+.+|++|+++.+
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I--~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMI--HPYCLEGCPKLARFEI 307 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEE--CTTTTTTCTTCCEECC
T ss_pred HhhCCCCCCEEEeCCccccCCcccEE--CHHHhhCCccCCeEEe
Confidence 3445666666666543210 000 0113456666666665
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.95 E-value=0.036 Score=53.68 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=66.3
Q ss_pred CCceeEEEEccccc---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265 224 APNLLSFEYSGPIL---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 224 ~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
+++|+.+.+.+... ...+.+ ..|+++.+... +..... ..+..+++|+.+.+........ .....-...+
T Consensus 225 ~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~---~aF~~c~~L~~l~l~~~~~~~~---~~~~I~~~aF 296 (401)
T 4fdw_A 225 TSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG-VTNIAS---RAFYYCPELAEVTTYGSTFNDD---PEAMIHPYCL 296 (401)
T ss_dssp CTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT-CCEECT---TTTTTCTTCCEEEEESSCCCCC---TTCEECTTTT
T ss_pred CCCCCEEecCCCccCcccccccc-CCccEEEeCCC-ccEECh---hHhhCCCCCCEEEeCCccccCC---cccEECHHHh
Confidence 45566665543311 122333 56777777432 111112 4567888999999876322100 0001113346
Q ss_pred CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEeccccccccccccccc-CCCCccccccCCCcEEEEEee
Q 013265 301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIK-DQPYLSFTELRSIRVVELLGF 377 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p-~c~~~~~~~l~~L~~v~i~~~ 377 (446)
..+++|+.+.|...-..-. ...+.+|++|+++.|. ..+..+. .+ |..| +|+.|.+.+-
T Consensus 297 ~~c~~L~~l~l~~~i~~I~----~~aF~~c~~L~~l~lp----------~~l~~I~~~a----F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 297 EGCPKLARFEIPESIRILG----QGLLGGNRKVTQLTIP----------ANVTQINFSA----FNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTCTTCCEECCCTTCCEEC----TTTTTTCCSCCEEEEC----------TTCCEECTTS----SSSS-CCCEEEECCS
T ss_pred hCCccCCeEEeCCceEEEh----hhhhcCCCCccEEEEC----------ccccEEcHHh----CCCC-CCCEEEEcCC
Confidence 6788899888864321100 1135789999999982 1122221 22 2255 7888888763
No 153
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.75 E-value=0.0039 Score=65.56 Aligned_cols=101 Identities=13% Similarity=0.004 Sum_probs=67.9
Q ss_pred CCceeEEEEccccc---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265 224 APNLLSFEYSGPIL---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 224 ~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
.++|+.|++++... +..+.++++|+.+++..+.+. .+..-+..+++|+.|+|+++.+ . .++..+
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~Ls~N~l-------~--~lp~~~ 289 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT----ELPAEIKNLSNLRVLDLSHNRL-------T--SLPAEL 289 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS----CCCGGGGGGTTCCEEECTTSCC-------S--SCCSSG
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc----ccChhhhCCCCCCEEeCcCCcC-------C--ccChhh
Confidence 45566666665532 333447888999998776443 1224457899999999998533 1 345667
Q ss_pred CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
..+++|++|.|..+.-. .+ ..-+..+++|+.|+|...
T Consensus 290 ~~l~~L~~L~L~~N~l~-~l---p~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT-TL---PWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GGGTTCSEEECCSSCCC-CC---CSSTTSCTTCCCEECTTS
T ss_pred cCCCCCCEEECCCCCCC-cc---ChhhhcCCCccEEeCCCC
Confidence 78899999999988421 21 223678999999999543
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=94.59 E-value=0.05 Score=45.84 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=58.0
Q ss_pred CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccc-cC
Q 013265 225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYL-HD 299 (446)
Q Consensus 225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~-~~ 299 (446)
++|+.|++.+..+ +..+.++++|+.+++..+.+..... ..+..+++|+.|+|.+..+. .++ ..
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~L~~N~l~---------~l~~~~ 100 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT---GVFDKLTQLTQLDLNDNHLK---------SIPRGA 100 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC---------CCCTTT
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh---hHhCCcchhhEEECCCCccc---------eeCHHH
Confidence 5666666665532 3346678888888887664433222 44567888999998874321 122 23
Q ss_pred CCCCCcccEEEEEecCC---CCCHHHHHHHHhhCC
Q 013265 300 IPEMCNLKHLEIIGTPK---VNDLIFCIALLEAAP 331 (446)
Q Consensus 300 ~~~~~~L~~L~L~~~~~---~~~~~~l~~ll~~~p 331 (446)
+..+++|++|.|..+.- -.++..+...++.-+
T Consensus 101 ~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~ 135 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHT 135 (174)
T ss_dssp TTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred hccccCCCEEEeCCCCcccccccHHHHHHHHHhcc
Confidence 56678889988888751 123455555555443
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.63 E-value=0.17 Score=48.59 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=66.6
Q ss_pred CceeEEEEccccc---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265 225 PNLLSFEYSGPIL---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP 301 (446)
Q Consensus 225 p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~ 301 (446)
++|+.+.+..... ...+.+++.++.+........ . .....+.+|+.+.+.... . ..-...+.
T Consensus 253 ~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~---~---~~F~~~~~L~~i~l~~~i--------~-~I~~~aF~ 317 (394)
T 4fs7_A 253 TDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP---E---KTFYGCSSLTEVKLLDSV--------K-FIGEEAFE 317 (394)
T ss_dssp SSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC---T---TTTTTCTTCCEEEECTTC--------C-EECTTTTT
T ss_pred ccceeEEcCCCcceeeccccccccccceeccCceeec---c---cccccccccccccccccc--------c-eechhhhc
Confidence 4455555443311 123445555655554332111 1 334567788888876510 0 01123455
Q ss_pred CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCc
Q 013265 302 EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHT 381 (446)
Q Consensus 302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~ 381 (446)
.+.+|+.+.|...-. .+. ..-+.+|.+|+++.+. ..+..+.. ..|..|.+|+.|.+-.- .
T Consensus 318 ~c~~L~~i~lp~~v~--~I~--~~aF~~c~~L~~i~lp----------~~l~~I~~---~aF~~C~~L~~i~lp~~---~ 377 (394)
T 4fs7_A 318 SCTSLVSIDLPYLVE--EIG--KRSFRGCTSLSNINFP----------LSLRKIGA---NAFQGCINLKKVELPKR---L 377 (394)
T ss_dssp TCTTCCEECCCTTCC--EEC--TTTTTTCTTCCEECCC----------TTCCEECT---TTBTTCTTCCEEEEEGG---G
T ss_pred CCCCCCEEEeCCccc--EEh--HHhccCCCCCCEEEEC----------ccccEehH---HHhhCCCCCCEEEECCC---C
Confidence 677888887743311 000 1125778888888772 11111111 11224578888887531 1
Q ss_pred chHHHHHHHHhcCccccce
Q 013265 382 ADFELVMYLIFSAKLLEKI 400 (446)
Q Consensus 382 ~e~~~~~~ll~~a~~Le~l 400 (446)
..+ ++-..+++.|+.+
T Consensus 378 ~~~---~~~F~~c~~L~~I 393 (394)
T 4fs7_A 378 EQY---RYDFEDTTKFKWI 393 (394)
T ss_dssp GGG---GGGBCTTCEEEEE
T ss_pred EEh---hheecCCCCCcEE
Confidence 111 2224677777665
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=91.74 E-value=0.11 Score=43.31 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=27.9
Q ss_pred CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeec
Q 013265 225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTC 282 (446)
Q Consensus 225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~ 282 (446)
++|++|++.+..+ +..+.++++|+.+++..+.+..... ..+..+++|+.|.|.+.
T Consensus 54 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR---GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCH---HHhcCCCCCCEEEeCCC
Confidence 4455555544422 1223456666666665543322222 34556666777776664
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=89.80 E-value=0.18 Score=42.29 Aligned_cols=39 Identities=15% Similarity=0.075 Sum_probs=21.3
Q ss_pred cCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeec
Q 013265 241 FRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTC 282 (446)
Q Consensus 241 ~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~ 282 (446)
+.++++|+.+++..+.+..... ..+..+++|+.|.|.+.
T Consensus 77 ~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDNHLKSIPR---GAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCSEEECCSS
T ss_pred hCCcchhhEEECCCCccceeCH---HHhccccCCCEEEeCCC
Confidence 3456666666665543332222 33556667777777664
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=89.64 E-value=0.17 Score=45.80 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=48.6
Q ss_pred CCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCC----
Q 013265 243 NVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVN---- 318 (446)
Q Consensus 243 ~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---- 318 (446)
++|+|+.++++.+.+.. ...+..++..+++|+.|.|++..+.. .. . ...+..+ +|++|.|.++.-..
T Consensus 168 ~l~~L~~L~Ls~N~l~~-l~~l~~~~~~l~~L~~L~Ls~N~i~~----~~--~-l~~l~~l-~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNLSGNELKS----ER--E-LDKIKGL-KLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCC-CGGGTTHHHHSTTCCEEECTTSCCCS----GG--G-GGGGTTS-CCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCC-CccchhHHhhCCCCCEEECCCCccCC----ch--h-hhhcccC-CcceEEccCCcCccccCc
Confidence 45666666665543221 11222556678888888888743311 10 1 1122233 88888888775211
Q ss_pred CHHHHHHHHhhCCCceEEE
Q 013265 319 DLIFCIALLEAAPSLYKFS 337 (446)
Q Consensus 319 ~~~~l~~ll~~~p~L~~L~ 337 (446)
.......++..+|+|+.|+
T Consensus 239 ~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHHCTTCCEES
T ss_pred chhHHHHHHHHCcccCeEC
Confidence 1123446788899998885
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=88.39 E-value=0.67 Score=43.33 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=45.0
Q ss_pred ccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhccccccc-CCCCCCcccEEEEEecC--C
Q 013265 240 SFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLH-DIPEMCNLKHLEIIGTP--K 316 (446)
Q Consensus 240 ~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~--~ 316 (446)
.+.++++|+.+++..+.+..... ..+..+++|+.|+|++..+. .++. .+..+ .|+.|.|..+. .
T Consensus 51 ~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~---------~~~~~~~~~~-~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 51 DLRGLGELRNLTIVKSGLRFVAP---DAFHFTPRLSRLNLSFNALE---------SLSWKTVQGL-SLQELVLSGNPLHC 117 (347)
T ss_dssp GSCSCCCCSEEECCSSCCCEECT---TGGGSCSCCCEEECCSSCCS---------CCCSTTTCSC-CCCEEECCSSCCCC
T ss_pred HhccccCCCEEECCCCccceeCH---HHhcCCcCCCEEeCCCCccc---------eeCHHHcccC-CceEEEeeCCCccC
Confidence 46677888888887664443333 45677888888888874321 1121 12222 38888888775 2
Q ss_pred CCCHHHHHHHHh
Q 013265 317 VNDLIFCIALLE 328 (446)
Q Consensus 317 ~~~~~~l~~ll~ 328 (446)
...+.++...++
T Consensus 118 ~c~l~~~~~~~~ 129 (347)
T 2ifg_A 118 SCALRWLQRWEE 129 (347)
T ss_dssp CGGGHHHHHHHH
T ss_pred CCccHHHHHHHH
Confidence 334455555554
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=82.77 E-value=0.57 Score=44.83 Aligned_cols=99 Identities=12% Similarity=0.123 Sum_probs=56.2
Q ss_pred CCceeEEEEccccc-ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265 224 APNLLSFEYSGPIL-PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE 302 (446)
Q Consensus 224 ~p~L~~l~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
+++++.+.+..... ...+.++.+|+++.+... +..... ..+..+.+|+.+.|.... . ..-...+..
T Consensus 275 ~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~---~aF~~c~~L~~i~lp~~v--------~-~I~~~aF~~ 341 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGE---EAFESCTSLVSIDLPYLV--------E-EIGKRSFRG 341 (394)
T ss_dssp CTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECT---TTTTTCTTCCEECCCTTC--------C-EECTTTTTT
T ss_pred ccccceeccCceeeccccccccccccccccccc-cceech---hhhcCCCCCCEEEeCCcc--------c-EEhHHhccC
Confidence 35555555443322 234567788888888543 222222 445678889988885410 1 011234567
Q ss_pred CCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265 303 MCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 303 ~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
+.+|+.+.+...-. .+. ...+.+|++|+++++.
T Consensus 342 c~~L~~i~lp~~l~--~I~--~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 342 CTSLSNINFPLSLR--KIG--ANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTCCEECCCTTCC--EEC--TTTBTTCTTCCEEEEE
T ss_pred CCCCCEEEECcccc--Eeh--HHHhhCCCCCCEEEEC
Confidence 78888887754321 100 1136889999999883
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=81.04 E-value=1.3 Score=42.27 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=42.0
Q ss_pred ccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCC
Q 013265 240 SFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVND 319 (446)
Q Consensus 240 ~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 319 (446)
.+.++.+|+++.+... +..... ..+..|.+|+.+.|...-- . .-...+..+.+|+.+.+....
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~---~aF~~C~~L~~i~ip~sv~-------~--I~~~aF~~C~~L~~i~~~~~~---- 368 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILD---DAFAGCEQLERIAIPSSVT-------K--IPESAFSNCTALNNIEYSGSR---- 368 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECT---TTTTTCTTCCEEEECTTCC-------B--CCGGGGTTCTTCCEEEESSCH----
T ss_pred eecCCCCcCEEEeCCc-ccEehH---hHhhCCCCCCEEEECcccC-------E--EhHhHhhCCCCCCEEEECCce----
Confidence 4567777888777432 111112 4456778888888754100 0 112245567888888776541
Q ss_pred HHHHHHHHhhCCCceEEEEE
Q 013265 320 LIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 320 ~~~l~~ll~~~p~L~~L~l~ 339 (446)
....-+..|.+|+.+.+.
T Consensus 369 --~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 369 --SQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp --HHHHTCBCCCCC------
T ss_pred --eehhhhhccCCCCEEEeC
Confidence 112335668888888773
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=79.08 E-value=0.96 Score=38.72 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=78.8
Q ss_pred hhhhhccCCCceEEEEeec-ccccccchhcccccccCCCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265 264 LCQHSIFLVQLHTLKLDTC-HLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 264 l~~~l~~l~~l~~L~L~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
+..++..-+.|+.|.|... .+ + ......+...+..-..|++|+|..+. .+.....+...|+.-..|++|+|...
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~i--g--d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRV--S--KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSS--C--HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHhcCCCccEEECCCCCCC--C--HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 4467777788899988752 22 1 11111222334456789999998875 33345578889999999999999532
Q ss_pred cccccccccccccccCCCCccccccCCCcEEEEEe----eecCcchHHHHHHHHhcCccccceEEecC
Q 013265 342 SQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG----FVGHTADFELVMYLIFSAKLLEKIIIDPC 405 (446)
Q Consensus 342 ~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~----~~g~~~e~~~~~~ll~~a~~Le~l~i~~~ 405 (446)
...+.+. ..+.+.+. .-..|+++.+.+ .-|...+..+++.|-.| +.|.++.+...
T Consensus 109 ---~Ig~~Ga-~ala~aL~----~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 ---FLTPELL-ARLLRSTL----VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFA 167 (197)
T ss_dssp ---BCCHHHH-HHHHHHTT----TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCC
T ss_pred ---cCCHHHH-HHHHHHHh----hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCC
Confidence 3232222 11111111 016699999975 33666777888877555 56888887643
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=79.07 E-value=0.5 Score=44.23 Aligned_cols=86 Identities=12% Similarity=-0.062 Sum_probs=51.8
Q ss_pred cCCCCCcceEEecc-cchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCC
Q 013265 241 FRNVPNLVDASFWG-CFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVND 319 (446)
Q Consensus 241 ~~~~~~L~~l~l~~-~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 319 (446)
+..+++|+.+++.. +.+..... ..+..+++|+.|+|+...+. ...+..+..+++|++|+|+.+.-..-
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~---~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL---RDLRGLGELRNLTIVKSGLR--------FVAPDAFHFTPRLSRLNLSFNALESL 95 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG---GGSCSCCCCSEEECCSSCCC--------EECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred CCCCCCeeEEEccCCCCCCCcCh---hHhccccCCCEEECCCCccc--------eeCHHHhcCCcCCCEEeCCCCcccee
Confidence 55667788888864 43332222 45678899999999884221 12233456788999999988741111
Q ss_pred HHHHHHHHhhCCCceEEEEEEe
Q 013265 320 LIFCIALLEAAPSLYKFSLKLV 341 (446)
Q Consensus 320 ~~~l~~ll~~~p~L~~L~l~~~ 341 (446)
. ..++...+ |+.|.+...
T Consensus 96 ~---~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 96 S---WKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp C---STTTCSCC-CCEEECCSS
T ss_pred C---HHHcccCC-ceEEEeeCC
Confidence 0 11233333 888888644
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=76.37 E-value=1.9 Score=38.79 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=9.2
Q ss_pred ccCCCceEEEEee
Q 013265 269 IFLVQLHTLKLDT 281 (446)
Q Consensus 269 ~~l~~l~~L~L~~ 281 (446)
..+++|+.|.|+.
T Consensus 167 ~~l~~L~~L~Ls~ 179 (267)
T 3rw6_A 167 ENIPELLSLNLSN 179 (267)
T ss_dssp HHCTTCCEEECTT
T ss_pred hhCCCCCEEECCC
Confidence 5677777777776
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=74.96 E-value=2.8 Score=39.90 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=59.6
Q ss_pred CCceeEEEEccccc---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265 224 APNLLSFEYSGPIL---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 224 ~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
+.+|+++.+.+... ...+.+++.|+++.+... ...... ..+..+.+|+.+.|... .. ..-...+
T Consensus 264 c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-i~~I~~---~aF~~c~~L~~i~lp~~--------v~-~I~~~aF 330 (394)
T 4gt6_A 264 CAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-ITELPE---SVFAGCISLKSIDIPEG--------IT-QILDDAF 330 (394)
T ss_dssp CSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT---TTTTTCTTCCEEECCTT--------CC-EECTTTT
T ss_pred cccccEEecccccceecCcccccccccccccCCCc-ccccCc---eeecCCCCcCEEEeCCc--------cc-EehHhHh
Confidence 35555555543321 234667889999888543 111112 45678899999998651 01 1112356
Q ss_pred CCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEE
Q 013265 301 PEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~ 339 (446)
..+.+|+++.|-..- ...+ .-+.+|++|+++++.
T Consensus 331 ~~C~~L~~i~ip~sv~~I~~-----~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 331 AGCEQLERIAIPSSVTKIPE-----SAFSNCTALNNIEYS 365 (394)
T ss_dssp TTCTTCCEEEECTTCCBCCG-----GGGTTCTTCCEEEES
T ss_pred hCCCCCCEEEECcccCEEhH-----hHhhCCCCCCEEEEC
Confidence 678999999995432 1111 236899999999984
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=61.06 E-value=4.3 Score=38.20 Aligned_cols=77 Identities=10% Similarity=0.067 Sum_probs=43.9
Q ss_pred CCceeEEEEcccc---cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265 224 APNLLSFEYSGPI---LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 224 ~p~L~~l~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
+.+|+.+.+.... ....+.++++|+++.+....+..... ..+..+.+|+.+.|.... . ..-...+
T Consensus 262 ~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~---~aF~~c~~L~~i~lp~~l--------~-~I~~~aF 329 (379)
T 4h09_A 262 CTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEP---RVFMDCVKLSSVTLPTAL--------K-TIQVYAF 329 (379)
T ss_dssp CTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECT---TTTTTCTTCCEEECCTTC--------C-EECTTTT
T ss_pred eehhccccccccceeccccccccccccccccccccccceehh---hhhcCCCCCCEEEcCccc--------c-EEHHHHh
Confidence 3455666554332 12346678889988886432222222 455678889998886410 0 0112345
Q ss_pred CCCCcccEEEEE
Q 013265 301 PEMCNLKHLEII 312 (446)
Q Consensus 301 ~~~~~L~~L~L~ 312 (446)
..+.+|+++.+-
T Consensus 330 ~~C~~L~~i~ip 341 (379)
T 4h09_A 330 KNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCCCCCC
T ss_pred hCCCCCCEEEEC
Confidence 667788887764
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=58.98 E-value=4.2 Score=34.64 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=56.9
Q ss_pred CCCCcceEEeccc-chh-hhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC-CCCC
Q 013265 243 NVPNLVDASFWGC-FSA-YIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP-KVND 319 (446)
Q Consensus 243 ~~~~L~~l~l~~~-~~~-~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~ 319 (446)
+-+.|+++++... .+. .....+.+.+..=+.|+.|.|..+.+... ....+...+..-+.|++|.|..+. ....
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~----ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDS----EARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHH----HHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChH----HHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 4566777777642 222 22334556666667888888887544211 112222233445678888888875 3344
Q ss_pred HHHHHHHHhhCCCceEEEEE
Q 013265 320 LIFCIALLEAAPSLYKFSLK 339 (446)
Q Consensus 320 ~~~l~~ll~~~p~L~~L~l~ 339 (446)
...+...|+.-..|++|.|+
T Consensus 115 a~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECC
T ss_pred HHHHHHHHhhCCceeEEECC
Confidence 55677777777889999885
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=56.47 E-value=8.6 Score=36.08 Aligned_cols=98 Identities=10% Similarity=0.080 Sum_probs=58.8
Q ss_pred CCceeEEEEccccc---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265 224 APNLLSFEYSGPIL---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI 300 (446)
Q Consensus 224 ~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~ 300 (446)
+.+|+.+.+..... ...+.++..|+.+.+... ...... .....+++|+.+.+....+ . ..-...+
T Consensus 239 ~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~---~aF~~c~~L~~i~l~~~~i-------~-~I~~~aF 306 (379)
T 4h09_A 239 MKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPY---LLCSGCSNLTKVVMDNSAI-------E-TLEPRVF 306 (379)
T ss_dssp CSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECT---TTTTTCTTCCEEEECCTTC-------C-EECTTTT
T ss_pred CccceEEEcCCCccEeCccccceeehhcccccccc-ceeccc---ccccccccccccccccccc-------c-eehhhhh
Confidence 35666666644321 234567888888888543 111112 4567889999999875211 1 0112346
Q ss_pred CCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEE
Q 013265 301 PEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSL 338 (446)
Q Consensus 301 ~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l 338 (446)
..+.+|+++.|-..- ...+ .-+.+|.+|+++.|
T Consensus 307 ~~c~~L~~i~lp~~l~~I~~-----~aF~~C~~L~~i~i 340 (379)
T 4h09_A 307 MDCVKLSSVTLPTALKTIQV-----YAFKNCKALSTISY 340 (379)
T ss_dssp TTCTTCCEEECCTTCCEECT-----TTTTTCTTCCCCCC
T ss_pred cCCCCCCEEEcCccccEEHH-----HHhhCCCCCCEEEE
Confidence 678899999885432 1111 13688999999887
No 169
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=46.93 E-value=14 Score=22.90 Aligned_cols=15 Identities=47% Similarity=0.669 Sum_probs=9.2
Q ss_pred CCCCChHHHHHHHhC
Q 013265 8 INELPDDILVNILSR 22 (446)
Q Consensus 8 is~LPd~iL~~ILs~ 22 (446)
|+.||.||-.+||+-
T Consensus 21 F~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 21 FKQLPADIQEEILSG 35 (48)
T ss_dssp TTTSCHHHHHHHTTC
T ss_pred HHHCcHHHHHHHHhc
Confidence 566666666666653
No 170
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=31.06 E-value=1.5e+02 Score=22.23 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=35.1
Q ss_pred hccchhhhhcccccceEEecCCCCCCCCCCc---cccCCCCCchhhHhHHHHHHHHHHHhccCCCcceE
Q 013265 33 IISSRWRYLWRGFSGCLNFDDPFTMANSKWP---HLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEEL 98 (446)
Q Consensus 33 ~lSkrWr~lw~~~~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~l~~l 98 (446)
++++.| .|.+.|.+......+.|. .+.++.. ...++..-+.+.+..|++.-||-+
T Consensus 32 ll~qGw-------~p~lEf~d~~~~~~~yW~mwklPmf~~~----d~~~Vl~Ele~C~k~~p~~yVRli 89 (109)
T 1rbl_M 32 MIEQGF-------HPLIEFNEHSNPEEFYWTMWKLPLFACA----APQQVLDEVRECRSEYGDCYIRVA 89 (109)
T ss_dssp HHHHTC-------EEEEEEESCCCTTCCCCEECSSCCTTCC----CHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHCCC-------EEEEEeccCccccccEEeecccCCcCCC----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 456665 478999877666665554 2333332 246677888899988887644433
No 171
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=25.34 E-value=1.7e+02 Score=21.96 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=34.3
Q ss_pred hccchhhhhcccccceEEecCCCCCCCCCCc---cccCCCCCchhhHhHHHHHHHHHHHhccCCCcceE
Q 013265 33 IISSRWRYLWRGFSGCLNFDDPFTMANSKWP---HLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEEL 98 (446)
Q Consensus 33 ~lSkrWr~lw~~~~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~l~~l 98 (446)
++++.| .|.+.|.+......+.|. .+.++.. ...++..-+.+.+..|++.-||-+
T Consensus 34 ll~qGw-------~p~iEf~d~~~~~~~yW~mwklPmf~~~----d~~~Vl~El~~C~k~~p~~yVRli 91 (110)
T 1svd_M 34 AIAQGW-------SPGIEHVEVKNSMNQYWYMWKLPFFGEQ----NVDNVLAEIEACRSAYPTHQVKLV 91 (110)
T ss_dssp HHHTTC-------EEEEEEECGGGTTCSCCEEESCCCTTCC----CHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred HHHCCC-------eeEEEeccCCccCCcEEeecccCCcCCC----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 556666 478888876555555553 2333332 246677788899988887644443
No 172
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=22.09 E-value=2.6e+02 Score=21.23 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=42.1
Q ss_pred CChHHHHHHHhCCC--hhHHHHH---hhccchhhhhcccccceEEecCCCCCCCCCCc---cccCCCCCchhhHhHHHHH
Q 013265 11 LPDDILVNILSRLT--MKEAVRT---SIISSRWRYLWRGFSGCLNFDDPFTMANSKWP---HLNLKSGPINVERHKFVNW 82 (446)
Q Consensus 11 LPd~iL~~ILs~Lp--~kd~~rt---s~lSkrWr~lw~~~~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 82 (446)
+|.+=--+=||+|| +.+.++. .++++.| .|.+.|.+..-...+.|. .+..+.. ...++..-
T Consensus 4 ~p~~kkfeTfSyLP~Lt~eqI~kQV~yll~qGw-------~~~lE~~d~~~~~~~yW~mWklPmf~~~----d~~~Vl~E 72 (118)
T 3zxw_B 4 LPKERRYETFSYLPPLSDAQIARQIQYAIDQGY-------HPCVEFNETSNAEIRYWTMWKLPLFNCT----NAQDVLNE 72 (118)
T ss_dssp ----------CCSCCCCHHHHHHHHHHHHHHTC-------EEEEEEESCCCTTCCCCEEESSCCTTCC----CHHHHHHH
T ss_pred CCCCccccccccCCCCCHHHHHHHHHHHHhCCC-------eeEEEeccCCCcccCEEeecccCCcCCC----CHHHHHHH
Confidence 34333344678887 3443332 2667776 478888777666655553 3444332 24667778
Q ss_pred HHHHHHhccCCCcceEE
Q 013265 83 VNQVLSSLEGHCTEELR 99 (446)
Q Consensus 83 v~~~L~~~~~~~l~~l~ 99 (446)
+.+.+..|++.-||-+.
T Consensus 73 le~C~k~~p~~yVRliG 89 (118)
T 3zxw_B 73 VQQCRSEYPNCFIRVVA 89 (118)
T ss_dssp HHHHHHHCTTSEEEEEE
T ss_pred HHHHHHHCCCceEEEEE
Confidence 88999999886455443
No 173
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=20.79 E-value=2.9e+02 Score=21.63 Aligned_cols=57 Identities=9% Similarity=0.132 Sum_probs=35.8
Q ss_pred hccchhhhhcccccceEEecCCCCCCCCCCc---cccCCCCCchhhHhHHHHHHHHHHHhccCCCcceEEE
Q 013265 33 IISSRWRYLWRGFSGCLNFDDPFTMANSKWP---HLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRI 100 (446)
Q Consensus 33 ~lSkrWr~lw~~~~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~l~~l~l 100 (446)
++++.| .|.+.|.+......+.|. .++++.. ...++..-+.+.+..|++.-|+-+.+
T Consensus 26 ll~qGw-------~p~iEf~d~~~~r~~yW~mWkLPmF~~t----d~~~Vl~Ele~C~k~~p~~YVRliGf 85 (138)
T 1bwv_S 26 MISKKL-------AIGIEYTNDIHPRNAYWEIWGLPLFDVT----DPAAVLFEINACRKARSNFYIKVVGF 85 (138)
T ss_dssp HHHTTC-------EEEEEEESCCCTTCCCCEECSSCBCSCC----CHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred HHHCCC-------eeeEEecCCCCCccCEEeccCCCCcCCC----CHHHHHHHHHHHHHHCCCCeEEEEEE
Confidence 556666 478888876655555554 3333332 25667778889998888764554433
No 174
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=20.48 E-value=3.1e+02 Score=21.49 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=34.9
Q ss_pred hccchhhhhcccccceEEecCCCCCCCCCCc---cccCCCCCchhhHhHHHHHHHHHHHhccCCCcceE
Q 013265 33 IISSRWRYLWRGFSGCLNFDDPFTMANSKWP---HLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEEL 98 (446)
Q Consensus 33 ~lSkrWr~lw~~~~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~l~~l 98 (446)
++++.| .|.+.|.+..-...+.|. .++++.. ...++..-+.+.+..|++.-|+-+
T Consensus 26 lL~qGw-------~~~iEf~d~~~~r~~yW~mWkLPmFg~~----d~~~Vl~Ele~C~k~~p~~YVRli 83 (138)
T 4f0h_B 26 MISKKL-------AIGIEYTNDIHPRNSFWEMWGLPLFEVT----DPAPVLFEINACRKAKSNFYIKVV 83 (138)
T ss_dssp HHHTTC-------EEEEEEESCCCTTCCCCEESSCCBCSCC----SHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHhCCC-------EEEEEeCCCCCCcCCEEeecCCCCcCCC----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 456666 478888877655555553 3333332 256677888899999887645433
Done!