BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013266
         (446 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 261 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITT 320
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67

Query: 321 YEGKHNHDVPA 331
           YEGKHNHD+PA
Sbjct: 68  YEGKHNHDLPA 78



 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 95  TREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKG 153
           T E    +DGY WRKYGQK VKG+  PRSY+KCT P C ++K VER+  D +     Y+G
Sbjct: 11  TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEG 70

Query: 154 SHNHPKP 160
            HNH  P
Sbjct: 71  KHNHDLP 77


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)

Query: 258 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 317
           RIVV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 318 ITTYEGKHNHDVP 330
           ITTYEGKH+HD+P
Sbjct: 62  ITTYEGKHDHDMP 74



 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 103 DGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVER-SLDGQITEIVYKGSHNHPKP 160
           DGY WRKYGQK VKGS  PRSY++C+ P CP+KK VER S D ++    Y+G H+H  P
Sbjct: 16  DGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74


>pdb|3F6K|A Chain A, Crystal Structure Of The Vps10p Domain Of Human
           SortilinNTS3 IN Complex With Neurotensin
          Length = 685

 Score = 28.5 bits (62), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 57  FAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVK 116
              +E F  D   Y+    S    Q    GH  +   Y RE+  + +GY  RK    + +
Sbjct: 590 LCSLEDFLCDFGYYRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGY--RKIPGDKCQ 647

Query: 117 GSENP 121
           G  NP
Sbjct: 648 GGVNP 652


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.128    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,517,909
Number of Sequences: 62578
Number of extensions: 567368
Number of successful extensions: 1044
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 15
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)