Query 013266
Match_columns 446
No_of_seqs 316 out of 1232
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:20:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.3E-35 4.6E-40 241.4 4.7 76 257-332 1-76 (76)
2 1wj2_A Probable WRKY transcrip 100.0 2.4E-35 8.2E-40 241.0 3.3 75 257-331 4-78 (78)
3 2ayd_A WRKY transcription fact 100.0 1E-29 3.5E-34 206.9 3.8 65 97-161 10-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 1.1E-29 3.8E-34 207.5 3.6 64 98-161 14-78 (78)
5 2rpr_A Flywch-type zinc finger 71.5 1.9 6.5E-05 34.5 2.2 50 269-331 23-75 (87)
6 2rpr_A Flywch-type zinc finger 60.5 3 0.0001 33.4 1.3 49 100-160 23-74 (87)
7 1cz6_A Protein (androctonin); 16.7 34 0.0012 22.3 0.3 8 292-299 16-23 (26)
8 1odh_A MGCM1; transcription fa 12.8 1.1E+02 0.0038 28.3 2.7 11 152-162 149-159 (174)
9 1odh_A MGCM1; transcription fa 11.3 1.2E+02 0.004 28.1 2.4 39 293-334 122-161 (174)
10 1qxn_A SUD, sulfide dehydrogen 6.7 1.6E+02 0.0053 24.5 1.1 24 266-289 109-133 (137)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-35 Score=241.45 Aligned_cols=76 Identities=67% Similarity=1.280 Sum_probs=73.3
Q ss_pred ceeEeeccCCcccCCCCchhhhcCccccCCCCCCCcccccCCCCCCchhhhhhhcCCCCEEEEEEecccCCCCCCC
Q 013266 257 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA 332 (446)
Q Consensus 257 ~rvvv~t~se~d~~dDGY~WRKYGQK~IkGn~~pRsYYrCt~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~P~~ 332 (446)
.||+|+|.+++++++|||+|||||||.|||+++||+|||||.+||+|+|+|||+.+|+.+++|||+|+|||+.|.+
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999863
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=2.4e-35 Score=240.98 Aligned_cols=75 Identities=79% Similarity=1.297 Sum_probs=69.8
Q ss_pred ceeEeeccCCcccCCCCchhhhcCccccCCCCCCCcccccCCCCCCchhhhhhhcCCCCEEEEEEecccCCCCCC
Q 013266 257 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPA 331 (446)
Q Consensus 257 ~rvvv~t~se~d~~dDGY~WRKYGQK~IkGn~~pRsYYrCt~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~P~ 331 (446)
.+|+|+|.+++++++|||+|||||||.|||+++||+|||||.+||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.95 E-value=1e-29 Score=206.91 Aligned_cols=65 Identities=52% Similarity=0.996 Sum_probs=60.8
Q ss_pred ccccCCCCccccccCcccCCCCCCCCCcccCCCCCCccccchhccc-CCceeEeeecCCCCCCCCC
Q 013266 97 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT 161 (446)
Q Consensus 97 ~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~ 161 (446)
+....+|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 10 ~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 10 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 4567899999999999999999999999999999999999999985 6789999999999999885
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.95 E-value=1.1e-29 Score=207.55 Aligned_cols=64 Identities=52% Similarity=0.977 Sum_probs=59.9
Q ss_pred cccCCCCccccccCcccCCCCCCCCCcccCCCCCCccccchhccc-CCceeEeeecCCCCCCCCC
Q 013266 98 QKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT 161 (446)
Q Consensus 98 ~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~ 161 (446)
..+++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 14 ~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 14 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 567899999999999999999999999999999999999999975 7789999999999999874
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=71.47 E-value=1.9 Score=34.48 Aligned_cols=50 Identities=18% Similarity=0.442 Sum_probs=32.5
Q ss_pred cCCCCchhhhcCccccCCCCCCCcccccCC---CCCCchhhhhhhcCCCCEEEEEEecccCCCCCC
Q 013266 269 ILDDGYRWRKYGQKVVKGNPNPRSYYKCTT---TGCPVRKHVERASHDMRAVITTYEGKHNHDVPA 331 (446)
Q Consensus 269 ~~dDGY~WRKYGQK~IkGn~~pRsYYrCt~---~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~P~ 331 (446)
++-|||.-.+--+ ...+.|.+|+. .+|.|+-.... + .+ .-.+.|||++..
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~--~~--~~~~~HnH~p~~ 75 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H--RI--MVMRSHCHQPDL 75 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T--EE--EECSCCSSCCCH
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C--CE--ECCCCcCCCCch
Confidence 5568998775321 12368999984 58999855542 1 13 346899997653
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=60.54 E-value=3 Score=33.36 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=30.8
Q ss_pred cCCCCccccccCcccCCCCCCCCCcccCCC---CCCccccchhcccCCceeEeeecCCCCCCCC
Q 013266 100 RSEDGYNWRKYGQKQVKGSENPRSYFKCTF---PDCPMKKKVERSLDGQITEIVYKGSHNHPKP 160 (446)
Q Consensus 100 ~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~---~~C~akK~Vqr~~dg~~~~i~Y~G~HnH~~p 160 (446)
..-|||...+--. ...+.|.+|+. .+|.|+-.... ++ ++-.+.|||++.
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCCc
Confidence 3578887664221 12357999986 47999744332 22 346789999753
No 7
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=16.69 E-value=34 Score=22.33 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.5
Q ss_pred cccccCCC
Q 013266 292 SYYKCTTT 299 (446)
Q Consensus 292 sYYrCt~~ 299 (446)
.||+||+.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999964
No 8
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=12.77 E-value=1.1e+02 Score=28.25 Aligned_cols=11 Identities=55% Similarity=1.316 Sum_probs=10.1
Q ss_pred cCCCCCCCCCC
Q 013266 152 KGSHNHPKPTS 162 (446)
Q Consensus 152 ~G~HnH~~p~~ 162 (446)
+|.|.||+|..
T Consensus 149 KG~HDHpRPe~ 159 (174)
T 1odh_A 149 KGEHDHPRPET 159 (174)
T ss_dssp ECCCCSCCCCC
T ss_pred ccccCCCCCCC
Confidence 69999999987
No 9
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=11.29 E-value=1.2e+02 Score=28.06 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=25.0
Q ss_pred ccccC-CCCCCchhhhhhhcCCCCEEEEEEecccCCCCCCCCC
Q 013266 293 YYKCT-TTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARG 334 (446)
Q Consensus 293 YYrCt-~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~P~~r~ 334 (446)
-+.|. +-|=||+ +.-|. |...+...-.|.|+|+.|.+..
T Consensus 122 ~~~Crgh~GyPVT-hFWrh--~~~~ifFqaKG~HDHpRPe~k~ 161 (174)
T 1odh_A 122 LIPCRGHGGFPVT-NFWRH--DGRFIFFQSKGEHDHPRPETKL 161 (174)
T ss_dssp EECCCTBTTBCCE-EEEEE--CSSBEEEEEECCCCSCCCCCHH
T ss_pred eEeccCcCCCcce-EEEEE--cCCEEEEecccccCCCCCCCcc
Confidence 45555 3466663 45553 4445546778999999997653
No 10
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=6.75 E-value=1.6e+02 Score=24.54 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=19.3
Q ss_pred CcccCCCCch-hhhcCccccCCCCC
Q 013266 266 DIDILDDGYR-WRKYGQKVVKGNPN 289 (446)
Q Consensus 266 e~d~~dDGY~-WRKYGQK~IkGn~~ 289 (446)
++.+++.|+. |++.|-..++++++
T Consensus 109 ~v~~l~GG~~~W~~~g~p~~~~~~~ 133 (137)
T 1qxn_A 109 TIYNSEGGMDKWLEEGLPSLDRSHH 133 (137)
T ss_dssp CEEEESSCHHHHHHTTCCEECCCCC
T ss_pred ceEEEcCcHHHHHHCCCCccccccc
Confidence 3446788985 99999999998875
Done!