Your job contains 1 sequence.
>013267
MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF
YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV
FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL
QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFG
GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD
GFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCC
SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC
KHASSLGGSIIRISFSQLQSIRENSQ
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013267
(446 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2018630 - symbol:PTB3 "polypyrimidine tract-bi... 1929 2.9e-199 1
UNIPROTKB|F1S6R7 - symbol:PTBP1 "Polypyrimidine tract-bin... 357 2.5e-80 3
UNIPROTKB|J9P5T5 - symbol:PTBP1 "Uncharacterized protein"... 355 5.6e-80 3
UNIPROTKB|F1PCJ7 - symbol:PTBP1 "Uncharacterized protein"... 355 5.9e-80 3
UNIPROTKB|P26599 - symbol:PTBP1 "Polypyrimidine tract-bin... 612 9.5e-80 2
UNIPROTKB|Q6P736 - symbol:Ptbp1 "Polypyrimidine tract bin... 351 1.1e-79 3
UNIPROTKB|F1LM18 - symbol:Ptbp1 "Polypyrimidine tract-bin... 350 1.4e-79 3
UNIPROTKB|Q8WN55 - symbol:PTBP1 "Polypyrimidine tract-bin... 602 8.4e-79 2
RGD|62047 - symbol:Ptbp1 "polypyrimidine tract binding pr... 343 1.1e-78 3
UNIPROTKB|Q29099 - symbol:PTBP1 "Polypyrimidine tract-bin... 338 6.0e-78 3
UNIPROTKB|F1P5K0 - symbol:PTBP1 "Uncharacterized protein"... 338 6.7e-78 3
UNIPROTKB|E1BVR1 - symbol:PTBP1 "Uncharacterized protein"... 338 1.7e-77 3
ZFIN|ZDB-GENE-050522-492 - symbol:ptbp1a "polypyrimidine ... 340 2.4e-77 3
UNIPROTKB|F1NRD6 - symbol:PTBP2 "Uncharacterized protein"... 597 8.5e-77 2
UNIPROTKB|E2RSK4 - symbol:PTBP2 "Uncharacterized protein"... 596 1.1e-76 2
UNIPROTKB|Q9UKA9 - symbol:PTBP2 "Polypyrimidine tract-bin... 591 3.6e-76 2
MGI|MGI:1860489 - symbol:Ptbp2 "polypyrimidine tract bind... 591 3.6e-76 2
RGD|1359267 - symbol:Ptbp2 "polypyrimidine tract binding ... 591 3.6e-76 2
ZFIN|ZDB-GENE-060810-49 - symbol:ptbp2b "polypyrimidine t... 324 1.7e-74 3
UNIPROTKB|B4DSS8 - symbol:PTBP2 "Polypyrimidine tract-bin... 570 5.9e-74 2
UNIPROTKB|D4AB53 - symbol:Ptbp1 "Polypyrimidine tract-bin... 540 1.8e-72 2
MGI|MGI:97791 - symbol:Ptbp1 "polypyrimidine tract bindin... 535 1.2e-71 2
ZFIN|ZDB-GENE-091116-1 - symbol:ptbp3 "polypyrimidine tra... 313 2.1e-71 3
UNIPROTKB|O95758 - symbol:PTBP3 "Polypyrimidine tract-bin... 318 4.2e-71 3
ZFIN|ZDB-GENE-050320-141 - symbol:ptbp2a "polypyrimidine ... 706 1.1e-69 1
RGD|727953 - symbol:Smptb "polypyrimidine tract-binding p... 320 6.2e-67 3
FB|FBgn0011224 - symbol:heph "hephaestus" species:7227 "D... 294 2.1e-65 3
UNIPROTKB|F1PXP9 - symbol:PTBP3 "Uncharacterized protein"... 316 5.6e-65 3
DICTYBASE|DDB_G0284321 - symbol:DDB_G0284321 "putative po... 401 4.5e-63 2
WB|WBGene00004207 - symbol:ptb-1 species:6239 "Caenorhabd... 390 1.3e-62 2
UNIPROTKB|F1S549 - symbol:LOC100515203 "Uncharacterized p... 342 8.8e-59 2
UNIPROTKB|I3LDE4 - symbol:LOC100515203 "Uncharacterized p... 342 8.8e-59 2
UNIPROTKB|I3LP39 - symbol:LOC100515203 "Uncharacterized p... 336 3.8e-58 2
MGI|MGI:1923334 - symbol:Ptbp3 "polypyrimidine tract bind... 316 5.4e-54 2
RGD|621671 - symbol:Ptbp3 "polypyrimidine tract binding p... 314 1.4e-53 2
ZFIN|ZDB-GENE-040426-710 - symbol:hnrpl "heterogeneous nu... 346 4.3e-52 2
DICTYBASE|DDB_G0278105 - symbol:DDB_G0278105 "heterogeneo... 304 1.1e-51 2
ZFIN|ZDB-GENE-030131-9796 - symbol:ptbp1b "polypyrimidine... 357 3.0e-50 2
ZFIN|ZDB-GENE-040426-2707 - symbol:hnrnpl2 "heterogeneous... 322 8.0e-49 2
UNIPROTKB|E1BIB4 - symbol:HNRNPL "Uncharacterized protein... 327 1.1e-48 2
UNIPROTKB|E2R944 - symbol:HNRNPL "Uncharacterized protein... 327 1.1e-48 2
UNIPROTKB|P14866 - symbol:HNRNPL "Heterogeneous nuclear r... 327 1.1e-48 2
MGI|MGI:104816 - symbol:Hnrnpl "heterogeneous nuclear rib... 327 1.4e-48 2
UNIPROTKB|F2Z3R2 - symbol:Hnrnpl "Protein Hnrnpl" species... 327 1.4e-48 2
UNIPROTKB|F1LPP9 - symbol:Hnrnpl "Protein Hnrnpl" species... 327 2.2e-48 2
UNIPROTKB|F1LY02 - symbol:F1LY02 "Uncharacterized protein... 502 4.7e-48 1
UNIPROTKB|F1P0T4 - symbol:HNRPLL "Uncharacterized protein... 490 8.8e-47 1
UNIPROTKB|B4DI28 - symbol:PTBP2 "cDNA FLJ55578, highly si... 307 2.9e-46 2
MGI|MGI:1919942 - symbol:Hnrpll "heterogeneous nuclear ri... 476 2.7e-45 1
RGD|1305861 - symbol:Hnrpll "heterogeneous nuclear ribonu... 476 2.7e-45 1
UNIPROTKB|Q8WVV9 - symbol:HNRPLL "Heterogeneous nuclear r... 472 7.1e-45 1
UNIPROTKB|F1LQ48 - symbol:Hnrnpl "Protein Hnrnpl" species... 312 1.4e-44 2
UNIPROTKB|F1N7G0 - symbol:HNRPLL "Uncharacterized protein... 469 1.5e-44 1
UNIPROTKB|J9P3Y8 - symbol:HNRPLL "Uncharacterized protein... 469 1.5e-44 1
UNIPROTKB|D6W592 - symbol:HNRPLL "Heterogeneous nuclear r... 469 1.5e-44 1
UNIPROTKB|F1MPG6 - symbol:F1MPG6 "Uncharacterized protein... 315 8.6e-44 2
UNIPROTKB|Q06A95 - symbol:ROD1 "ROD1" species:9823 "Sus s... 315 1.1e-43 2
GENEDB_PFALCIPARUM|PFF0320c - symbol:PFF0320c "polypyrimi... 418 4.8e-43 2
UNIPROTKB|C6KSR3 - symbol:PFF0320c "Polypyrimidine tract ... 418 4.8e-43 2
UNIPROTKB|I3L8B8 - symbol:HNRPLL "Uncharacterized protein... 302 3.6e-42 2
UNIPROTKB|A8YXY5 - symbol:PTBP1 "PTBP1 protein" species:9... 281 5.8e-41 2
TAIR|locus:2102142 - symbol:PTB1 "polypyrimidine tract-bi... 370 2.2e-40 2
UNIPROTKB|F1LZ79 - symbol:F1LZ79 "Uncharacterized protein... 296 4.2e-40 2
UNIPROTKB|F1M040 - symbol:F1M040 "Uncharacterized protein... 296 7.2e-40 2
WB|WBGene00016624 - symbol:C44B7.2 species:6239 "Caenorha... 283 5.3e-36 2
UNIPROTKB|K7EK45 - symbol:PTBP1 "Polypyrimidine tract-bin... 281 7.7e-36 2
TAIR|locus:2163746 - symbol:PTB2 "AT5G53180" species:3702... 355 1.2e-35 2
DICTYBASE|DDB_G0275365 - symbol:DDB_G0275365 "Heterogeneo... 213 6.2e-33 3
FB|FBgn0003435 - symbol:sm "smooth" species:7227 "Drosoph... 357 1.1e-32 1
UNIPROTKB|Q5JB52 - symbol:HNRPLL "Stromal RNA regulating ... 215 5.6e-32 2
UNIPROTKB|B7WPG3 - symbol:HNRPLL "Heterogeneous nuclear r... 212 6.8e-31 2
UNIPROTKB|F1S548 - symbol:LOC100739008 "Uncharacterized p... 336 1.8e-30 1
UNIPROTKB|I3LG16 - symbol:HNRPLL "Uncharacterized protein... 336 4.4e-30 1
UNIPROTKB|K7ES59 - symbol:PTBP1 "Polypyrimidine tract-bin... 208 3.7e-28 2
UNIPROTKB|F6Q0P6 - symbol:PTBP2 "Uncharacterized protein"... 195 1.5e-27 2
UNIPROTKB|H7BXH8 - symbol:HNRPLL "Heterogeneous nuclear r... 304 4.5e-27 1
UNIPROTKB|A6NLN1 - symbol:PTBP1 "Polypyrimidine tract-bin... 301 9.4e-27 1
UNIPROTKB|C9IYN3 - symbol:HNRPLL "Heterogeneous nuclear r... 301 9.4e-27 1
UNIPROTKB|E1C5J2 - symbol:E1C5J2 "Uncharacterized protein... 280 2.7e-24 1
UNIPROTKB|F1ND44 - symbol:F1ND44 "Uncharacterized protein... 280 2.7e-24 1
UNIPROTKB|K7ELW5 - symbol:PTBP1 "Polypyrimidine tract-bin... 206 2.6e-20 2
UNIPROTKB|C9JJZ7 - symbol:HNRPLL "Heterogeneous nuclear r... 215 5.3e-17 1
RGD|1359551 - symbol:Fblim1 "filamin binding LIM protein ... 209 2.4e-16 1
UNIPROTKB|K7EKJ7 - symbol:PTBP1 "Polypyrimidine tract-bin... 205 6.7e-16 1
UNIPROTKB|I3LPU8 - symbol:HNRNPL "Uncharacterized protein... 203 1.1e-15 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 127 4.1e-05 2
UNIPROTKB|H0Y8T4 - symbol:MATR3 "Matrin-3" species:9606 "... 126 4.3e-05 1
UNIPROTKB|B3KM87 - symbol:MATR3 "cDNA FLJ10526 fis, clone... 128 5.3e-05 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 111 7.7e-05 2
UNIPROTKB|Q8UWC5 - symbol:MATR3 "Nuclear protein matrin 3... 129 9.0e-05 1
UNIPROTKB|D6REM6 - symbol:MATR3 "Matrin-3" species:9606 "... 128 9.8e-05 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 124 0.00010 1
UNIPROTKB|F1MXI4 - symbol:MATR3 "Uncharacterized protein"... 128 0.00011 1
UNIPROTKB|P43243 - symbol:MATR3 "Matrin-3" species:9606 "... 128 0.00011 1
UNIPROTKB|F1RGI7 - symbol:MATR3 "Uncharacterized protein"... 128 0.00011 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 118 0.00011 1
UNIPROTKB|A8MXP9 - symbol:MATR3 "Matrin-3" species:9606 "... 128 0.00011 1
ZFIN|ZDB-GENE-050522-496 - symbol:rbm14a "RNA binding mot... 88 0.00013 2
MGI|MGI:1298379 - symbol:Matr3 "matrin 3" species:10090 "... 127 0.00014 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 114 0.00014 2
WARNING: Descriptions of 16 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2018630 [details] [associations]
symbol:PTB3 "polypyrimidine tract-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006417 "regulation of translation" evidence=IEP] [GO:0043484
"regulation of RNA splicing" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0000932 EMBL:AC005687 KO:K14948
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:BT014899 EMBL:BT015028
IPI:IPI00544143 RefSeq:NP_001077672.1 RefSeq:NP_175010.2
UniGene:At.22472 ProteinModelPortal:Q6ICX4 SMR:Q6ICX4 STRING:Q6ICX4
PaxDb:Q6ICX4 PRIDE:Q6ICX4 EnsemblPlants:AT1G43190.1
EnsemblPlants:AT1G43190.2 GeneID:840918 KEGG:ath:AT1G43190
GeneFarm:5076 TAIR:At1g43190 InParanoid:Q6ICX4 OMA:IKMHNHK
PhylomeDB:Q6ICX4 ProtClustDB:CLSN2690441 Genevestigator:Q6ICX4
GermOnline:AT1G43190 Uniprot:Q6ICX4
Length = 432
Score = 1929 (684.1 bits), Expect = 2.9e-199, P = 2.9e-199
Identities = 367/441 (83%), Positives = 401/441 (90%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SA++ALQF
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
+TNVQPTIRGRNVYVQFSSHQELTT+EQN GR DEPNRILLVTIHHMLYPITV+VLHQV
Sbjct: 61 FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSP+GFVEK+VTFQKSAGFQALIQYQ++ A AR++LQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFG 240
QVNYNN+RSRD+TNPNLPAEQKGR S Y + G VA+PQM FG
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTG---------VAYPQMANTSAIAAAFG 231
Query: 241 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 300
GGLPPGITGTNDRCTVLVSNLN+D IDEDKLFNLFSLYGNI+RIKLLRNKPDHALVQMGD
Sbjct: 232 GGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGD 291
Query: 301 GFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCC 360
GFQAELAVHFLKGA+LFGKRLEVNFSKHPNIT G D+H+Y+NSNLNRFNRNAAKNYRYCC
Sbjct: 292 GFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYCC 351
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SPTKMIHLSTLPQDVTEEE+++H++EHG++VNTK+FEMNGKKQALV FE EE+A EALVC
Sbjct: 352 SPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVC 411
Query: 421 KHASSLGGSIIRISFSQLQSI 441
KHA+SLGGSIIRISFSQLQ+I
Sbjct: 412 KHATSLGGSIIRISFSQLQTI 432
>UNIPROTKB|F1S6R7 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:FP015903 Ensembl:ENSSSCT00000014665
Uniprot:F1S6R7
Length = 557
Score = 357 (130.7 bits), Expect = 2.5e-80, Sum P(3) = 2.5e-80
Identities = 84/249 (33%), Positives = 130/249 (52%)
Query: 198 PAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTV 256
P G P +A G+ P P G + PG+ G + +
Sbjct: 307 PYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNS-VL 365
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 316
LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L
Sbjct: 366 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKL 425
Query: 317 FGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 369
GK + + SKH N+ +G + T +Y NS L+RF + +KN++ P+ +HLS
Sbjct: 426 HGKPVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLS 485
Query: 370 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 429
+P ++EE++ +G IV F +K AL+ + E+A +AL+ H LG +
Sbjct: 486 NIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGEN 545
Query: 430 I-IRISFSQ 437
+R+SFS+
Sbjct: 546 HHLRVSFSK 554
Score = 281 (104.0 bits), Expect = 2.5e-80, Sum P(3) = 2.5e-80
Identities = 59/127 (46%), Positives = 81/127 (63%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 179 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 236
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS + A
Sbjct: 237 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDN-QPSLD-QTMA 294
Query: 214 GGMYAPG 220
APG
Sbjct: 295 AAFGAPG 301
Score = 210 (79.0 bits), Expect = 2.5e-80, Sum P(3) = 2.5e-80
Identities = 37/90 (41%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQAR 146
Score = 71 (30.1 bits), Expect = 8.1e-38, Sum P(2) = 8.1e-38
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I V N+ + ++ + L Q+F FG + K++ NQ ALLQ D SA +A +
Sbjct: 186 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA-------K 238
Query: 66 PTIRGRNVY 74
++ G+N+Y
Sbjct: 239 LSLDGQNIY 247
Score = 66 (28.3 bits), Expect = 1.5e-43, Sum P(3) = 1.5e-43
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + + +G + K+ N K+ ALV QA A+ + L G +
Sbjct: 372 PERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVQMADGSQAQLAMSHLNGHKLHGKPV 430
Query: 432 RISFSQLQSIR 442
RI+ S+ Q+++
Sbjct: 431 RITLSKHQNVQ 441
Score = 41 (19.5 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 104 TIHHMLYP--ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
T+H P I+ E L +FS +G + K F + ALIQ A+ A L
Sbjct: 481 TLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNH 540
Query: 162 NIYDGCCQLDIQFS 175
++ + L + FS
Sbjct: 541 DLGENH-HLRVSFS 553
>UNIPROTKB|J9P5T5 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 CTD:5725 KO:K13218 EMBL:AAEX03012673
RefSeq:XP_542215.2 ProteinModelPortal:J9P5T5
Ensembl:ENSCAFT00000049054 GeneID:485097 KEGG:cfa:485097
Uniprot:J9P5T5
Length = 557
Score = 355 (130.0 bits), Expect = 5.6e-80, Sum P(3) = 5.6e-80
Identities = 84/249 (33%), Positives = 130/249 (52%)
Query: 198 PAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTV 256
P G P +A G+ P P G + PG+ G + +
Sbjct: 307 PYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNS-VL 365
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 316
LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L
Sbjct: 366 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKL 425
Query: 317 FGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 369
GK + + SKH N+ +G + T +Y NS L+RF + +KN++ P+ +HLS
Sbjct: 426 HGKPVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLS 485
Query: 370 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 429
+P V+E+++ +G IV F +K AL+ + E+A +AL+ H LG +
Sbjct: 486 NIPPSVSEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGEN 545
Query: 430 I-IRISFSQ 437
+R+SFS+
Sbjct: 546 HHLRVSFSK 554
Score = 281 (104.0 bits), Expect = 5.6e-80, Sum P(3) = 5.6e-80
Identities = 59/127 (46%), Positives = 81/127 (63%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 179 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 236
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS + A
Sbjct: 237 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLD-QTMA 294
Query: 214 GGMYAPG 220
APG
Sbjct: 295 AAFGAPG 301
Score = 209 (78.6 bits), Expect = 5.6e-80, Sum P(3) = 5.6e-80
Identities = 37/90 (41%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQAR 146
Score = 71 (30.1 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I V N+ + ++ + L Q+F FG + K++ NQ ALLQ D SA +A +
Sbjct: 186 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA-------K 238
Query: 66 PTIRGRNVY 74
++ G+N+Y
Sbjct: 239 LSLDGQNIY 247
Score = 70 (29.7 bits), Expect = 9.3e-20, Sum P(3) = 9.3e-20
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 247 ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAE 305
+ G + ++V NL + D L +FS +G +++I +N AL+Q D A+
Sbjct: 177 MAGQSPVLRIIVENLFYP-VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQ 235
Query: 306 LAVHFLKGALLFGK--RLEVNFSK 327
A L G ++ L ++FSK
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSK 259
Score = 66 (28.3 bits), Expect = 1.9e-43, Sum P(3) = 1.9e-43
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + + +G + K+ N K+ ALV QA A+ + L G +
Sbjct: 372 PERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVQMADGSQAQLAMSHLNGHKLHGKPV 430
Query: 432 RISFSQLQSIR 442
RI+ S+ Q+++
Sbjct: 431 RITLSKHQNVQ 441
Score = 56 (24.8 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + L VT + + + G+++ F N + QAL+ + A A +
Sbjct: 181 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ + +RI FS+L S+
Sbjct: 241 LDGQNIYNACCTLRIDFSKLTSL 263
>UNIPROTKB|F1PCJ7 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051148 "negative regulation of muscle cell
differentiation" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:AAEX03012673
Ensembl:ENSCAFT00000031317 Uniprot:F1PCJ7
Length = 558
Score = 355 (130.0 bits), Expect = 5.9e-80, Sum P(3) = 5.9e-80
Identities = 84/249 (33%), Positives = 130/249 (52%)
Query: 198 PAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTV 256
P G P +A G+ P P G + PG+ G + +
Sbjct: 308 PYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNS-VL 366
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 316
LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L
Sbjct: 367 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKL 426
Query: 317 FGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 369
GK + + SKH N+ +G + T +Y NS L+RF + +KN++ P+ +HLS
Sbjct: 427 HGKPVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLS 486
Query: 370 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 429
+P V+E+++ +G IV F +K AL+ + E+A +AL+ H LG +
Sbjct: 487 NIPPSVSEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGEN 546
Query: 430 I-IRISFSQ 437
+R+SFS+
Sbjct: 547 HHLRVSFSK 555
Score = 281 (104.0 bits), Expect = 5.9e-80, Sum P(3) = 5.9e-80
Identities = 59/127 (46%), Positives = 81/127 (63%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 180 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 237
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS + A
Sbjct: 238 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLD-QTMA 295
Query: 214 GGMYAPG 220
APG
Sbjct: 296 AAFGAPG 302
Score = 209 (78.6 bits), Expect = 5.9e-80, Sum P(3) = 5.9e-80
Identities = 37/90 (41%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 58 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 117
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 118 VTPVLRGQPIYIQFSNHKELKTDSSPNQAR 147
Score = 71 (30.1 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I V N+ + ++ + L Q+F FG + K++ NQ ALLQ D SA +A +
Sbjct: 187 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA-------K 239
Query: 66 PTIRGRNVY 74
++ G+N+Y
Sbjct: 240 LSLDGQNIY 248
Score = 70 (29.7 bits), Expect = 9.4e-20, Sum P(3) = 9.4e-20
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 247 ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAE 305
+ G + ++V NL + D L +FS +G +++I +N AL+Q D A+
Sbjct: 178 MAGQSPVLRIIVENLFYP-VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQ 236
Query: 306 LAVHFLKGALLFGK--RLEVNFSK 327
A L G ++ L ++FSK
Sbjct: 237 HAKLSLDGQNIYNACCTLRIDFSK 260
Score = 66 (28.3 bits), Expect = 1.9e-43, Sum P(3) = 1.9e-43
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + + +G + K+ N K+ ALV QA A+ + L G +
Sbjct: 373 PERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVQMADGSQAQLAMSHLNGHKLHGKPV 431
Query: 432 RISFSQLQSIR 442
RI+ S+ Q+++
Sbjct: 432 RITLSKHQNVQ 442
Score = 56 (24.8 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + L VT + + + G+++ F N + QAL+ + A A +
Sbjct: 182 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 241
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ + +RI FS+L S+
Sbjct: 242 LDGQNIYNACCTLRIDFSKLTSL 264
>UNIPROTKB|P26599 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005730 "nucleolus" evidence=TAS] [GO:0008187 "poly-pyrimidine
tract binding" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CH471242
GO:GO:0048025 GO:GO:0000381 GO:GO:0008187 GO:GO:0036002
TIGRFAMs:TIGR01649 CTD:5725 HOVERGEN:HBG069548 KO:K13218
OMA:SEECAQT GO:GO:0051148 EMBL:X62006 EMBL:X65371 EMBL:X65372
EMBL:X60648 EMBL:X66975 EMBL:BT006819 EMBL:AC006273 EMBL:BC002397
EMBL:BC004383 EMBL:BC013694 IPI:IPI00179964 IPI:IPI00183626
IPI:IPI00334175 PIR:S23016 RefSeq:NP_002810.1 RefSeq:NP_114367.1
RefSeq:NP_114368.1 UniGene:Hs.172550 PDB:1QM9 PDB:1SJQ PDB:1SJR
PDB:2AD9 PDB:2ADB PDB:2ADC PDB:2EVZ PDB:3ZZY PDB:3ZZZ PDBsum:1QM9
PDBsum:1SJQ PDBsum:1SJR PDBsum:2AD9 PDBsum:2ADB PDBsum:2ADC
PDBsum:2EVZ PDBsum:3ZZY PDBsum:3ZZZ ProteinModelPortal:P26599
SMR:P26599 IntAct:P26599 MINT:MINT-1348690 STRING:P26599
PhosphoSite:P26599 DMDM:131528 SWISS-2DPAGE:P26599 PaxDb:P26599
PRIDE:P26599 DNASU:5725 Ensembl:ENST00000349038
Ensembl:ENST00000356948 Ensembl:ENST00000394601 GeneID:5725
KEGG:hsa:5725 UCSC:uc002lpq.2 UCSC:uc002lpr.2 GeneCards:GC19P000797
H-InvDB:HIX0137476 HGNC:HGNC:9583 HPA:CAB013507 MIM:600693
neXtProt:NX_P26599 PharmGKB:PA33934 eggNOG:NOG263741
HOGENOM:HOG000231699 ChEMBL:CHEMBL1293230 EvolutionaryTrace:P26599
GenomeRNAi:5725 NextBio:22252 PMAP-CutDB:P26599 ArrayExpress:P26599
Bgee:P26599 CleanEx:HS_PTBP1 Genevestigator:P26599
GermOnline:ENSG00000011304 Uniprot:P26599
Length = 531
Score = 612 (220.5 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
Identities = 136/354 (38%), Positives = 203/354 (57%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 179 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 236
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-QSGYSE 212
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS +
Sbjct: 237 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTMAA 295
Query: 213 AGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKL 271
A G+ P P G + PG+ G + +LVSNLN +R+ L
Sbjct: 296 AFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNS-VLLVSNLNPERVTPQSL 354
Query: 272 FNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 331
F LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH N+
Sbjct: 355 FILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 414
Query: 332 T---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL 384
+G + T +Y NS L+RF + +KN++ P+ +HLS +P V+EE++
Sbjct: 415 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF 474
Query: 385 EEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 437
+G +V F +K AL+ + E+A +AL+ H LG + +R+SFS+
Sbjct: 475 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528
Score = 208 (78.3 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
Identities = 37/90 (41%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQAR 146
Score = 67 (28.6 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + + +G + K+ N K+ ALV QA A+ + L G I
Sbjct: 346 PERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVQMADGNQAQLAMSHLNGHKLHGKPI 404
Query: 432 RISFSQLQSIR 442
RI+ S+ Q+++
Sbjct: 405 RITLSKHQNVQ 415
>UNIPROTKB|Q6P736 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract binding protein 1,
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:62047 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474029 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ IPI:IPI00390239 UniGene:Rn.64440 EMBL:BC061858
RefSeq:NP_001257986.1 RefSeq:NP_071961.2 SMR:Q6P736 STRING:Q6P736
Ensembl:ENSRNOT00000030357 GeneID:29497 KEGG:rno:29497
InParanoid:Q6P736 Genevestigator:Q6P736 Uniprot:Q6P736
Length = 556
Score = 351 (128.6 bits), Expect = 1.1e-79, Sum P(3) = 1.1e-79
Identities = 82/249 (32%), Positives = 131/249 (52%)
Query: 198 PAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTV 256
P G P +A G+ P P G + PG+ G + +
Sbjct: 306 PYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNS-VL 364
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 316
LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L
Sbjct: 365 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKL 424
Query: 317 FGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 369
GK + + SKH ++ +G + T +Y +S L+RF + +KN++ P+ +HLS
Sbjct: 425 HGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLS 484
Query: 370 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 429
+P V+E+++ S +G +V F +K AL+ + E+A +AL+ H LG +
Sbjct: 485 NIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGEN 544
Query: 430 I-IRISFSQ 437
+R+SFS+
Sbjct: 545 HHLRVSFSK 553
Score = 281 (104.0 bits), Expect = 1.1e-79, Sum P(3) = 1.1e-79
Identities = 59/127 (46%), Positives = 81/127 (63%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 178 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 235
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS + A
Sbjct: 236 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLD-QTMA 293
Query: 214 GGMYAPG 220
APG
Sbjct: 294 AAFGAPG 300
Score = 211 (79.3 bits), Expect = 1.1e-79, Sum P(3) = 1.1e-79
Identities = 38/90 (42%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQAR 145
Score = 118 (46.6 bits), Expect = 0.00076, P = 0.00076
Identities = 36/111 (32%), Positives = 55/111 (49%)
Query: 341 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 396
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 397 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 445
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
Score = 71 (30.1 bits), Expect = 4.1e-37, Sum P(2) = 4.1e-37
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I V N+ + ++ + L Q+F FG + K++ NQ ALLQ D SA +A +
Sbjct: 185 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA-------K 237
Query: 66 PTIRGRNVY 74
++ G+N+Y
Sbjct: 238 LSLDGQNIY 246
Score = 70 (29.7 bits), Expect = 4.3e-44, Sum P(3) = 4.3e-44
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + + +G + K+ N K+ ALV QA A+ + L G +
Sbjct: 371 PERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVQMADGSQAQLAMSHLNGHKLHGKSV 429
Query: 432 RISFSQLQSIR 442
RI+ S+ QS++
Sbjct: 430 RITLSKHQSVQ 440
Score = 42 (19.8 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 104 TIHHMLYPITV--EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
T+H P +V + L +FS +G V K F + ALIQ AV A L
Sbjct: 480 TLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNH 539
Query: 162 NIYDGCCQLDIQFS 175
++ + L + FS
Sbjct: 540 DLGENH-HLRVSFS 552
>UNIPROTKB|F1LM18 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:62047 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 IPI:IPI00562850
Ensembl:ENSRNOT00000044865 ArrayExpress:F1LM18 Uniprot:F1LM18
Length = 554
Score = 350 (128.3 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 81/244 (33%), Positives = 130/244 (53%)
Query: 203 GRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNL 261
G PS + G+ P P G + PG+ G + +LVSNL
Sbjct: 309 GVPSHLCHPSVAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNS-VLLVSNL 367
Query: 262 NSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRL 321
N +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK +
Sbjct: 368 NPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSV 427
Query: 322 EVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQD 374
+ SKH ++ +G + T +Y +S L+RF + +KN++ P+ +HLS +P
Sbjct: 428 RITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS 487
Query: 375 VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRI 433
V+E+++ S +G +V F +K AL+ + E+A +AL+ H LG + +R+
Sbjct: 488 VSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRV 547
Query: 434 SFSQ 437
SFS+
Sbjct: 548 SFSK 551
Score = 281 (104.0 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 59/127 (46%), Positives = 81/127 (63%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 178 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 235
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS + A
Sbjct: 236 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLD-QTMA 293
Query: 214 GGMYAPG 220
APG
Sbjct: 294 AAFGAPG 300
Score = 211 (79.3 bits), Expect = 1.4e-79, Sum P(3) = 1.4e-79
Identities = 38/90 (42%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQAR 145
Score = 118 (46.6 bits), Expect = 0.00076, P = 0.00076
Identities = 36/111 (32%), Positives = 55/111 (49%)
Query: 341 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 396
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 397 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 445
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
Score = 71 (30.1 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I V N+ + ++ + L Q+F FG + K++ NQ ALLQ D SA +A +
Sbjct: 185 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA-------K 237
Query: 66 PTIRGRNVY 74
++ G+N+Y
Sbjct: 238 LSLDGQNIY 246
Score = 70 (29.7 bits), Expect = 4.2e-44, Sum P(3) = 4.2e-44
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + + +G + K+ N K+ ALV QA A+ + L G +
Sbjct: 369 PERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVQMADGSQAQLAMSHLNGHKLHGKSV 427
Query: 432 RISFSQLQSIR 442
RI+ S+ QS++
Sbjct: 428 RITLSKHQSVQ 438
Score = 42 (19.8 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 104 TIHHMLYPITV--EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
T+H P +V + L +FS +G V K F + ALIQ AV A L
Sbjct: 478 TLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNH 537
Query: 162 NIYDGCCQLDIQFS 175
++ + L + FS
Sbjct: 538 DLGENH-HLRVSFS 550
>UNIPROTKB|Q8WN55 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0051148 "negative regulation of muscle cell differentiation"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:AF445640 IPI:IPI00712263
RefSeq:NP_776867.1 UniGene:Bt.9031 ProteinModelPortal:Q8WN55
SMR:Q8WN55 PRIDE:Q8WN55 Ensembl:ENSBTAT00000066209 GeneID:282018
KEGG:bta:282018 CTD:5725 HOVERGEN:HBG069548 KO:K13218 OMA:SEECAQT
NextBio:20805882 ArrayExpress:Q8WN55 GO:GO:0051148 Uniprot:Q8WN55
Length = 531
Score = 602 (217.0 bits), Expect = 8.4e-79, Sum P(2) = 8.4e-79
Identities = 134/354 (37%), Positives = 203/354 (57%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 179 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 236
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-QSGYSE 212
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS +
Sbjct: 237 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTMAA 295
Query: 213 AGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKL 271
A G+ P P G + PG+ G + +LVSNLN +R+ L
Sbjct: 296 AFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNS-VLLVSNLNPERVTPQSL 354
Query: 272 FNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 331
F LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH ++
Sbjct: 355 FILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQSV 414
Query: 332 T---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHL 384
+G + T +Y NS L+RF + +KN++ P+ +HLS +P ++E+++
Sbjct: 415 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDLKILF 474
Query: 385 EEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 437
+G IV F +K AL+ + E+A +AL+ H LG + +R+SFS+
Sbjct: 475 SSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528
Score = 209 (78.6 bits), Expect = 8.4e-79, Sum P(2) = 8.4e-79
Identities = 37/90 (41%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQAR 146
Score = 68 (29.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + + +G + K+ N K+ ALV QA A+ + L G +
Sbjct: 346 PERVTPQSLFILFGVYGDVQRVKVL-FNKKENALVQMADGSQAQLAMSHLNGHKLHGKPV 404
Query: 432 RISFSQLQSIR 442
RI+ S+ QS++
Sbjct: 405 RITLSKHQSVQ 415
>RGD|62047 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0003697 "single-stranded DNA
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;TAS]
[GO:0004519 "endonuclease activity" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0033119
"negative regulation of RNA splicing" evidence=ISO] [GO:0036002
"pre-mRNA binding" evidence=ISO] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=ISO;ISS] [GO:0051148
"negative regulation of muscle cell differentiation"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:62047
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0004519
GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
GO:GO:0051148 eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X60789
EMBL:X60790 EMBL:X74565 IPI:IPI00231555 IPI:IPI00390239 PIR:S15552
PIR:S36629 UniGene:Rn.64440 ProteinModelPortal:Q00438 SMR:Q00438
STRING:Q00438 PhosphoSite:Q00438 PRIDE:Q00438 UCSC:RGD:62047
InParanoid:Q00438 ChEMBL:CHEMBL2786 NextBio:609388
ArrayExpress:Q00438 Genevestigator:Q00438
GermOnline:ENSRNOG00000010448 Uniprot:Q00438
Length = 555
Score = 343 (125.8 bits), Expect = 1.1e-78, Sum P(3) = 1.1e-78
Identities = 79/242 (32%), Positives = 129/242 (53%)
Query: 205 PSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNS 263
PS + G+ P P G + PG+ G + +LVSNLN
Sbjct: 312 PSHLCHPSRAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNS-VLLVSNLNP 370
Query: 264 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 323
+R+ LF LF +YG++ R+K+L NK ++ALV+M DG QA+LA+ L G L GK + +
Sbjct: 371 ERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRI 430
Query: 324 NFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVT 376
SKH ++ +G + T +Y +S L+RF + +KN++ P+ +HLS +P V+
Sbjct: 431 TLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 490
Query: 377 EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISF 435
E+++ S +G +V F +K AL+ + E+A +AL+ H LG + +R+SF
Sbjct: 491 EDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSF 550
Query: 436 SQ 437
S+
Sbjct: 551 SK 552
Score = 281 (104.0 bits), Expect = 1.1e-78, Sum P(3) = 1.1e-78
Identities = 59/127 (46%), Positives = 81/127 (63%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 178 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 235
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS + A
Sbjct: 236 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLD-QTMA 293
Query: 214 GGMYAPG 220
APG
Sbjct: 294 AAFGAPG 300
Score = 211 (79.3 bits), Expect = 1.1e-78, Sum P(3) = 1.1e-78
Identities = 38/90 (42%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQAR 145
Score = 118 (46.6 bits), Expect = 0.00076, P = 0.00076
Identities = 36/111 (32%), Positives = 55/111 (49%)
Query: 341 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 396
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 397 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 445
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
Score = 71 (30.1 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I V N+ + ++ + L Q+F FG + K++ NQ ALLQ D SA +A +
Sbjct: 185 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA-------K 237
Query: 66 PTIRGRNVY 74
++ G+N+Y
Sbjct: 238 LSLDGQNIY 246
Score = 69 (29.3 bits), Expect = 5.4e-44, Sum P(3) = 5.4e-44
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + + +G + K+ N K+ ALV QA A+ + L G +
Sbjct: 370 PERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVEMADGSQAQLAMSHLNGHKLHGKSV 428
Query: 432 RISFSQLQSIR 442
RI+ S+ QS++
Sbjct: 429 RITLSKHQSVQ 439
Score = 42 (19.8 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 104 TIHHMLYPITV--EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
T+H P +V + L +FS +G V K F + ALIQ AV A L
Sbjct: 479 TLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNH 538
Query: 162 NIYDGCCQLDIQFS 175
++ + L + FS
Sbjct: 539 DLGENH-HLRVSFS 551
>UNIPROTKB|Q29099 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=ISS] [GO:0000381 "regulation
of alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 GO:GO:0051148
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X93009 PIR:S68857
RefSeq:NP_999396.1 UniGene:Ssc.16210 ProteinModelPortal:Q29099
SMR:Q29099 STRING:Q29099 PRIDE:Q29099 GeneID:397461 KEGG:ssc:397461
OrthoDB:EOG4GMTXQ Uniprot:Q29099
Length = 557
Score = 338 (124.0 bits), Expect = 6.0e-78, Sum P(3) = 6.0e-78
Identities = 82/249 (32%), Positives = 128/249 (51%)
Query: 198 PAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTV 256
P G P +A + P P G + PG+ G + +
Sbjct: 307 PYAGAGFPPTFAIPQAATVSVPNVHGALAPLAIPSAAARAAAAGRIAIPGLAGAGNS-VL 365
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 316
LVSNLN +R+ LF LF +Y ++ R+K+L NK ++ALVQM DG QA+LA+ L G L
Sbjct: 366 LVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKL 425
Query: 317 FGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 369
GK + + SKH N+ +G + T +Y NS L+RF + +KN++ P+ +HLS
Sbjct: 426 HGKPVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLS 485
Query: 370 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 429
+P ++EE++ +G IV F +K AL+ + E+A +AL+ H LG +
Sbjct: 486 NIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGEN 545
Query: 430 I-IRISFSQ 437
+R+SFS+
Sbjct: 546 HHLRVSFSK 554
Score = 281 (104.0 bits), Expect = 6.0e-78, Sum P(3) = 6.0e-78
Identities = 59/127 (46%), Positives = 81/127 (63%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 179 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 236
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS + A
Sbjct: 237 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDN-QPSLD-QTMA 294
Query: 214 GGMYAPG 220
APG
Sbjct: 295 AAFGAPG 301
Score = 210 (79.0 bits), Expect = 6.0e-78, Sum P(3) = 6.0e-78
Identities = 37/90 (41%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQAR 146
Score = 71 (30.1 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I V N+ + ++ + L Q+F FG + K++ NQ ALLQ D SA +A +
Sbjct: 186 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA-------K 238
Query: 66 PTIRGRNVY 74
++ G+N+Y
Sbjct: 239 LSLDGQNIY 247
Score = 57 (25.1 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + + + + K+ N K+ ALV QA A+ + L G +
Sbjct: 372 PERVTPQSLFILFGVYCDVQRVKIL-FNKKENALVQMADGSQAQLAMSHLNGHKLHGKPV 430
Query: 432 RISFSQLQSIR 442
RI+ S+ Q+++
Sbjct: 431 RITLSKHQNVQ 441
Score = 41 (19.5 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 104 TIHHMLYP--ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
T+H P I+ E L +FS +G + K F + ALIQ A+ A L
Sbjct: 481 TLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNH 540
Query: 162 NIYDGCCQLDIQFS 175
++ + L + FS
Sbjct: 541 DLGENH-HLRVSFS 553
>UNIPROTKB|F1P5K0 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00571435 Ensembl:ENSGALT00000003039
ArrayExpress:F1P5K0 Uniprot:F1P5K0
Length = 527
Score = 338 (124.0 bits), Expect = 6.7e-78, Sum P(3) = 6.7e-78
Identities = 81/251 (32%), Positives = 127/251 (50%)
Query: 195 PNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRC 254
P P G P +A G+ P G PG+ G +
Sbjct: 275 PASPYAGAGFPPTFAIPQAAGLTVQNVHGALAPLAIPAAAAAAAAGRIAIPGLAGAGNS- 333
Query: 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGA 314
+LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G
Sbjct: 334 VLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGQ 393
Query: 315 LLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIH 367
L GK + + SKH + +G + T +Y NS L+RF + +KN++ P+ +H
Sbjct: 394 KLHGKPIRITLSKHQTVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLH 453
Query: 368 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG 427
LS +P + EE++ +G +V F +K AL+ + E+A ++L+ H LG
Sbjct: 454 LSNIPPSIAEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNHDLG 513
Query: 428 GSI-IRISFSQ 437
+ +R+SFS+
Sbjct: 514 ENHHLRVSFSK 524
Score = 284 (105.0 bits), Expect = 6.7e-78, Sum P(3) = 6.7e-78
Identities = 59/127 (46%), Positives = 80/127 (62%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 150 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQH 207
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ P + A
Sbjct: 208 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPPLDQTMAAA 267
Query: 214 GGMYAPG 220
G APG
Sbjct: 268 FG--APG 272
Score = 202 (76.2 bits), Expect = 6.7e-78, Sum P(3) = 6.7e-78
Identities = 38/91 (41%), Positives = 60/91 (65%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT
Sbjct: 27 PSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTT 86
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQ-NAQGR 93
V P +R + +Y+QFS+H+EL T N GR
Sbjct: 87 VTPVLRSQPIYIQFSNHKELKTDNSPNQAGR 117
Score = 71 (30.1 bits), Expect = 6.9e-36, Sum P(2) = 6.9e-36
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I V N+ + ++ + L Q+F FG + K++ NQ ALLQ D SA +A +
Sbjct: 157 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQHA-------K 209
Query: 66 PTIRGRNVY 74
++ G+N+Y
Sbjct: 210 LSLDGQNIY 218
Score = 71 (30.1 bits), Expect = 5.9e-19, Sum P(3) = 5.9e-19
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 247 ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAE 305
+ G + ++V NL + D L +FS +G +++I +N AL+Q D A+
Sbjct: 148 MAGQSPVLRIIVENLFYP-VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQ 206
Query: 306 LAVHFLKGALLFGK--RLEVNFSK 327
A L G ++ L ++FSK
Sbjct: 207 HAKLSLDGQNIYNACCTLRIDFSK 230
Score = 64 (27.6 bits), Expect = 3.3e-43, Sum P(3) = 3.3e-43
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + + +G + K+ N K+ ALV QA A+ + L G I
Sbjct: 342 PERVTPQCLFILFGVYGDVQRVKIL-FNKKENALVQMADGNQAQLAMSHLNGQKLHGKPI 400
Query: 432 RISFSQLQSIR 442
RI+ S+ Q+++
Sbjct: 401 RITLSKHQTVQ 411
Score = 56 (24.8 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + L VT + + + G+++ F N + QAL+ + A A +
Sbjct: 152 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQHAKLS 211
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ + +RI FS+L S+
Sbjct: 212 LDGQNIYNACCTLRIDFSKLTSL 234
>UNIPROTKB|E1BVR1 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:SEECAQT GO:GO:0051148
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00684956 ProteinModelPortal:E1BVR1
Ensembl:ENSGALT00000003042 ArrayExpress:E1BVR1 Uniprot:E1BVR1
Length = 532
Score = 338 (124.0 bits), Expect = 1.7e-77, Sum P(3) = 1.7e-77
Identities = 81/251 (32%), Positives = 127/251 (50%)
Query: 195 PNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRC 254
P P G P +A G+ P G PG+ G +
Sbjct: 280 PASPYAGAGFPPTFAIPQAAGLTVQNVHGALAPLAIPAAAAAAAAGRIAIPGLAGAGNS- 338
Query: 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGA 314
+LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G
Sbjct: 339 VLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGQ 398
Query: 315 LLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIH 367
L GK + + SKH + +G + T +Y NS L+RF + +KN++ P+ +H
Sbjct: 399 KLHGKPIRITLSKHQTVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLH 458
Query: 368 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG 427
LS +P + EE++ +G +V F +K AL+ + E+A ++L+ H LG
Sbjct: 459 LSNIPPSIAEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNHDLG 518
Query: 428 GSI-IRISFSQ 437
+ +R+SFS+
Sbjct: 519 ENHHLRVSFSK 529
Score = 284 (105.0 bits), Expect = 1.7e-77, Sum P(3) = 1.7e-77
Identities = 59/127 (46%), Positives = 80/127 (62%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 155 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQH 212
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ P + A
Sbjct: 213 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPPLDQTMAAA 272
Query: 214 GGMYAPG 220
G APG
Sbjct: 273 FG--APG 277
Score = 199 (75.1 bits), Expect = 1.7e-77, Sum P(3) = 1.7e-77
Identities = 35/82 (42%), Positives = 57/82 (69%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT
Sbjct: 27 PSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTT 86
Query: 64 VQPTIRGRNVYVQFSSHQELTT 85
V P +R + +Y+QFS+H+EL T
Sbjct: 87 VTPVLRSQPIYIQFSNHKELKT 108
Score = 71 (30.1 bits), Expect = 8.0e-36, Sum P(2) = 8.0e-36
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I V N+ + ++ + L Q+F FG + K++ NQ ALLQ D SA +A +
Sbjct: 162 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQHA-------K 214
Query: 66 PTIRGRNVY 74
++ G+N+Y
Sbjct: 215 LSLDGQNIY 223
Score = 71 (30.1 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 247 ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAE 305
+ G + ++V NL + D L +FS +G +++I +N AL+Q D A+
Sbjct: 153 MAGQSPVLRIIVENLFYP-VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQ 211
Query: 306 LAVHFLKGALLFGK--RLEVNFSK 327
A L G ++ L ++FSK
Sbjct: 212 HAKLSLDGQNIYNACCTLRIDFSK 235
Score = 64 (27.6 bits), Expect = 7.6e-43, Sum P(3) = 7.6e-43
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + + +G + K+ N K+ ALV QA A+ + L G I
Sbjct: 347 PERVTPQCLFILFGVYGDVQRVKIL-FNKKENALVQMADGNQAQLAMSHLNGQKLHGKPI 405
Query: 432 RISFSQLQSIR 442
RI+ S+ Q+++
Sbjct: 406 RITLSKHQTVQ 416
Score = 56 (24.8 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + L VT + + + G+++ F N + QAL+ + A A +
Sbjct: 157 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQHAKLS 216
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ + +RI FS+L S+
Sbjct: 217 LDGQNIYNACCTLRIDFSKLTSL 239
>ZFIN|ZDB-GENE-050522-492 [details] [associations]
symbol:ptbp1a "polypyrimidine tract binding protein
1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0060472 "positive regulation of cortical granule exocytosis by
elevation of cytosolic calcium ion concentration" evidence=IMP]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IMP]
[GO:0045746 "negative regulation of Notch signaling pathway"
evidence=IMP] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=IMP] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-492 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009953 GO:GO:0045746
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548
KO:K13218 OMA:SEECAQT eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ GO:GO:0060729 EMBL:CR788230 EMBL:BC095372
IPI:IPI00607308 RefSeq:NP_001018313.1 UniGene:Dr.45492 SMR:Q503D3
Ensembl:ENSDART00000017668 GeneID:323490 KEGG:dre:323490 CTD:323490
InParanoid:Q503D3 NextBio:20808275 GO:GO:0060472 Uniprot:Q503D3
Length = 574
Score = 340 (124.7 bits), Expect = 2.4e-77, Sum P(3) = 2.4e-77
Identities = 82/232 (35%), Positives = 124/232 (53%)
Query: 215 GMYAPGARAVAFPQMXXXXXXXXXFGG-GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFN 273
GM A +++ P G GL G+T + +LVSNLN + + LF
Sbjct: 342 GMPAGALASLSVPGAAAAAAAAAAAGRLGLS-GLTAAGNS-VLLVSNLNPESVTPQCLFI 399
Query: 274 LFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQ 333
LF +YG+++R+K+L NK ++ALVQM DG QA+LA+ L G L+GK L SKH +
Sbjct: 400 LFGVYGDVMRVKILFNKKENALVQMSDGTQAQLAMSHLNGQKLYGKALRATLSKHTTVQL 459
Query: 334 GADTHE-------YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEE 386
+ HE Y NS L+RF + +KNY P+ +HLS +P VTE+++
Sbjct: 460 PREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSSTLHLSNIPPSVTEDDLRGLFLS 519
Query: 387 HGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 437
G++V F +K AL+ + E+A E+L+ H LG + +R+SFS+
Sbjct: 520 SGAVVKAFKFFQKDRKMALIQLASVEEAIESLIKFHNHDLGENHHLRVSFSK 571
Score = 289 (106.8 bits), Expect = 2.4e-77, Sum P(3) = 2.4e-77
Identities = 67/163 (41%), Positives = 92/163 (56%)
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G G + + +L V + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 186 GMGSQ-SPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALVQYSDGMTA 244
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP +PS +
Sbjct: 245 QHAKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDS-QPSFDAQT 303
Query: 212 -EAGGMYAPG-------ARAVAFPQMXXXXXXXXXFGGGLPPG 246
A + APG A A FPQ G+P G
Sbjct: 304 MAAAALTAPGIISASPYAGAHGFPQAFAIQQAAGLSLQGMPAG 346
Score = 196 (74.1 bits), Expect = 2.4e-77, Sum P(3) = 2.4e-77
Identities = 36/82 (43%), Positives = 58/82 (70%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + ++I+E +++ L PFG +T L+ML+ KNQA L+M SA + +Y++
Sbjct: 72 PSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEESAQTMVSYYSS 131
Query: 64 VQPTIRGRNVYVQFSSHQELTT 85
V P IR +++Q+S+H+EL T
Sbjct: 132 VTPVIRNHPIFMQYSNHKELKT 153
Score = 81 (33.6 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELAVHFLKGA 314
V+V NL + D L +FS +G +++I +N ALVQ DG A+ A L G
Sbjct: 196 VIVENLFYP-VTLDVLHQIFSKFGTVLKIITFTKNNQFQALVQYSDGMTAQHAKLSLDGQ 254
Query: 315 LLFGK--RLEVNFSK 327
++ L ++FSK
Sbjct: 255 NIYNACCTLRISFSK 269
Score = 67 (28.6 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 29/119 (24%), Positives = 54/119 (45%)
Query: 98 NRILLVTIHHMLYP--ITVEVLHQVFSPHGFVEKI-VTFQKSAGFQALIQYQLRPSAVVA 154
N +LLV+ L P +T + L +F +G V ++ + F K AL+Q A +A
Sbjct: 379 NSVLLVS---NLNPESVTPQCLFILFGVYGDVMRVKILFNKKEN--ALVQMSDGTQAQLA 433
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNER--SRDFTNPNLPAEQKGRPSQSGYS 211
S L G+ +Y + + +L + ++ ++D++N P + +P YS
Sbjct: 434 MSHLNGQKLYGKALRATLSKHTTVQLPREGHEDQGLTKDYSNS--PLHRFKKPGSKNYS 490
Score = 65 (27.9 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTN 63
+VI V N+ + ++ + L Q+F FG + K++ NQ AL+Q D +A +A
Sbjct: 195 RVI-VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALVQYSDGMTAQHA------ 247
Query: 64 VQPTIRGRNVY 74
+ ++ G+N+Y
Sbjct: 248 -KLSLDGQNIY 257
Score = 57 (25.1 bits), Expect = 3.1e-42, Sum P(3) = 3.1e-42
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + + +G ++ K+ N K+ ALV QA A+ + L G +
Sbjct: 389 PESVTPQCLFILFGVYGDVMRVKIL-FNKKENALVQMSDGTQAQLAMSHLNGQKLYGKAL 447
Query: 432 RISFSQLQSIR 442
R + S+ +++
Sbjct: 448 RATLSKHTTVQ 458
>UNIPROTKB|F1NRD6 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:QSQLAMS EMBL:AADN02012892 IPI:IPI00602746
Ensembl:ENSGALT00000008906 ArrayExpress:F1NRD6 Uniprot:F1NRD6
Length = 532
Score = 597 (215.2 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 137/369 (37%), Positives = 213/369 (57%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+
Sbjct: 166 TTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALL 223
Query: 144 QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG 203
QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G
Sbjct: 224 QYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-G 282
Query: 204 RPS-----QSGYSEAGGMYA-PGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTV 256
+P+ + +++ + A PGA + +A P G+P G++ + + +
Sbjct: 283 QPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMP-GVSASGNT-VL 340
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 316
LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA+ L G +
Sbjct: 341 LVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMSHLNGQKM 400
Query: 317 FGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 369
+GK + V SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS
Sbjct: 401 YGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLS 460
Query: 370 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 429
+P V EE++ + G V F K AL+ T E+A +AL+ H +LG +
Sbjct: 461 NIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMSTVEEAIQALIDLHNYNLGEN 520
Query: 430 I-IRISFSQ 437
+R+SFS+
Sbjct: 521 HHLRVSFSK 529
Score = 195 (73.7 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 35/91 (38%), Positives = 62/91 (68%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQ 91
V P +R + +Y+Q+S+H+EL T+ Q AQ
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQ 147
Score = 63 (27.2 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 19/83 (22%), Positives = 41/83 (49%)
Query: 361 SPTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 419
S ++ +S L ++ VT + + + +G + K+ N K AL+ Q+ A+
Sbjct: 335 SGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMS 393
Query: 420 CKHASSLGGSIIRISFSQLQSIR 442
+ + G IIR++ S+ Q+++
Sbjct: 394 HLNGQKMYGKIIRVTLSKHQTVQ 416
>UNIPROTKB|E2RSK4 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QSQLAMS EMBL:AAEX03004787
EMBL:AAEX03004788 EMBL:AAEX03004789 EMBL:AAEX03004790
ProteinModelPortal:E2RSK4 PRIDE:E2RSK4 Ensembl:ENSCAFT00000031985
Uniprot:E2RSK4
Length = 532
Score = 596 (214.9 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
Identities = 138/369 (37%), Positives = 211/369 (57%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+
Sbjct: 166 TTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALL 223
Query: 144 QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG 203
QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G
Sbjct: 224 QYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-G 282
Query: 204 RPS-----QSGYSEAGGMYA-PGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTV 256
+P+ + +++ + A PGA + +A P G+P G N +
Sbjct: 283 QPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNT--VL 340
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 316
LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G +
Sbjct: 341 LVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKM 400
Query: 317 FGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 369
+GK + V SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS
Sbjct: 401 YGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLS 460
Query: 370 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 429
+P V EE++ + G V F K AL+ T E+A +AL+ H +LG +
Sbjct: 461 NIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGEN 520
Query: 430 I-IRISFSQ 437
+R+SFS+
Sbjct: 521 HHLRVSFSK 529
Score = 195 (73.7 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
Identities = 35/91 (38%), Positives = 62/91 (68%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQ 91
V P +R + +Y+Q+S+H+EL T+ Q AQ
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQ 147
Score = 61 (26.5 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 368 LSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 426
+S L ++ VT + + + +G + K+ N K AL+ Q+ A+ + +
Sbjct: 342 VSNLNEEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKM 400
Query: 427 GGSIIRISFSQLQSIR 442
G IIR++ S+ Q+++
Sbjct: 401 YGKIIRVTLSKHQTVQ 416
>UNIPROTKB|Q9UKA9 [details] [associations]
symbol:PTBP2 "Polypyrimidine tract-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:2000177 "regulation of neural
precursor cell proliferation" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=IDA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 EMBL:AF176085 EMBL:AB051232
EMBL:AB051233 EMBL:AF530580 EMBL:AF530581 EMBL:AF530582
EMBL:AF530583 EMBL:BK000526 EMBL:AL357150 EMBL:BC016582
IPI:IPI00254162 IPI:IPI00514064 IPI:IPI00641664 IPI:IPI00647067
IPI:IPI00743676 IPI:IPI00748295 RefSeq:NP_067013.1
UniGene:Hs.269895 UniGene:Hs.596061 PDB:2CQ1 PDBsum:2CQ1
ProteinModelPortal:Q9UKA9 SMR:Q9UKA9 IntAct:Q9UKA9
MINT:MINT-1483252 STRING:Q9UKA9 PhosphoSite:Q9UKA9 DMDM:74761983
REPRODUCTION-2DPAGE:IPI00647067 PaxDb:Q9UKA9 PRIDE:Q9UKA9
DNASU:58155 Ensembl:ENST00000236228 Ensembl:ENST00000370197
Ensembl:ENST00000370198 Ensembl:ENST00000426398 GeneID:58155
KEGG:hsa:58155 UCSC:uc001drn.2 UCSC:uc001dro.2 UCSC:uc001drq.3
UCSC:uc001drr.3 CTD:58155 GeneCards:GC01P097187 HGNC:HGNC:17662
HPA:HPA047420 MIM:608449 neXtProt:NX_Q9UKA9 PharmGKB:PA33935
OrthoDB:EOG473PSG ChiTaRS:PTBP2 EvolutionaryTrace:Q9UKA9
GenomeRNAi:58155 NextBio:64859 ArrayExpress:Q9UKA9 Bgee:Q9UKA9
CleanEx:HS_PTBP2 Genevestigator:Q9UKA9 GermOnline:ENSG00000117569
Uniprot:Q9UKA9
Length = 531
Score = 591 (213.1 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 139/370 (37%), Positives = 214/370 (57%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+
Sbjct: 166 TTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALL 223
Query: 144 QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG 203
QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G
Sbjct: 224 QYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-G 282
Query: 204 RPS-----QSGYSEAGGMYA-PGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTV 256
+P+ + +++ + A PGA + +A P G+P G N +
Sbjct: 283 QPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNT--VL 340
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 316
LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G +
Sbjct: 341 LVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKM 400
Query: 317 FGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 369
+GK + V SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS
Sbjct: 401 YGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLS 460
Query: 370 TLPQDVTEEEIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 428
+P V EE++ + G V K F+ + K AL+ T E+A +AL+ H +LG
Sbjct: 461 NIPPSVAEEDLRTLFANTGGTVKAFKFFQDH--KMALLQMATVEEAIQALIDLHNYNLGE 518
Query: 429 SI-IRISFSQ 437
+ +R+SFS+
Sbjct: 519 NHHLRVSFSK 528
Score = 195 (73.7 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 35/91 (38%), Positives = 62/91 (68%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQ 91
V P +R + +Y+Q+S+H+EL T+ Q AQ
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQ 147
Score = 61 (26.5 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 368 LSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 426
+S L ++ VT + + + +G + K+ N K AL+ Q+ A+ + +
Sbjct: 342 VSNLNEEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKM 400
Query: 427 GGSIIRISFSQLQSIR 442
G IIR++ S+ Q+++
Sbjct: 401 YGKIIRVTLSKHQTVQ 416
>MGI|MGI:1860489 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=ISO] [GO:2000177 "regulation
of neural precursor cell proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1860489 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
GO:GO:2000177 KO:K14948 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG ChiTaRS:PTBP2
EMBL:AF095718 EMBL:AK013734 EMBL:AK137348 EMBL:BC010255
EMBL:AY333752 EMBL:BK000527 IPI:IPI00136002 IPI:IPI00751759
RefSeq:NP_062423.1 UniGene:Mm.29966 ProteinModelPortal:Q91Z31
SMR:Q91Z31 IntAct:Q91Z31 STRING:Q91Z31 PhosphoSite:Q91Z31
PaxDb:Q91Z31 PRIDE:Q91Z31 Ensembl:ENSMUST00000029780 GeneID:56195
KEGG:mmu:56195 UCSC:uc008rdi.1 UCSC:uc008rdk.2 InParanoid:Q91Z31
OMA:QSQLAMS NextBio:312010 Bgee:Q91Z31 CleanEx:MM_PTBP2
Genevestigator:Q91Z31 GermOnline:ENSMUSG00000028134 Uniprot:Q91Z31
Length = 531
Score = 591 (213.1 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 139/370 (37%), Positives = 214/370 (57%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+
Sbjct: 166 TTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALL 223
Query: 144 QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG 203
QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G
Sbjct: 224 QYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-G 282
Query: 204 RPS-----QSGYSEAGGMYA-PGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTV 256
+P+ + +++ + A PGA + +A P G+P G N +
Sbjct: 283 QPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNT--VL 340
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 316
LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G +
Sbjct: 341 LVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKM 400
Query: 317 FGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 369
+GK + V SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS
Sbjct: 401 YGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLS 460
Query: 370 TLPQDVTEEEIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 428
+P V EE++ + G V K F+ + K AL+ T E+A +AL+ H +LG
Sbjct: 461 NIPPSVAEEDLRTLFANTGGTVKAFKFFQDH--KMALLQMATVEEAIQALIDLHNYNLGE 518
Query: 429 SI-IRISFSQ 437
+ +R+SFS+
Sbjct: 519 NHHLRVSFSK 528
Score = 195 (73.7 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 35/91 (38%), Positives = 62/91 (68%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQ 91
V P +R + +Y+Q+S+H+EL T+ Q AQ
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQ 147
Score = 61 (26.5 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 368 LSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 426
+S L ++ VT + + + +G + K+ N K AL+ Q+ A+ + +
Sbjct: 342 VSNLNEEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKM 400
Query: 427 GGSIIRISFSQLQSIR 442
G IIR++ S+ Q+++
Sbjct: 401 YGKIIRVTLSKHQTVQ 416
>RGD|1359267 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISO] [GO:0006376
"mRNA splice site selection" evidence=IEA;ISO] [GO:0033119
"negative regulation of RNA splicing" evidence=IEA;ISO] [GO:2000177
"regulation of neural precursor cell proliferation"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1359267
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 KO:K14948 HOVERGEN:HBG069548
eggNOG:NOG263741 HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG
EMBL:AJ010585 EMBL:BC082076 EMBL:AY333750 IPI:IPI00471764
IPI:IPI00758469 RefSeq:NP_001005555.1 UniGene:Rn.64916
ProteinModelPortal:Q66H20 SMR:Q66H20 STRING:Q66H20 PRIDE:Q66H20
Ensembl:ENSRNOT00000015036 GeneID:310820 KEGG:rno:310820
UCSC:RGD:1359267 InParanoid:Q66H20 NextBio:662705
Genevestigator:Q66H20 GermOnline:ENSRNOG00000010827 Uniprot:Q66H20
Length = 531
Score = 591 (213.1 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 139/370 (37%), Positives = 214/370 (57%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+
Sbjct: 166 TTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALL 223
Query: 144 QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG 203
QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G
Sbjct: 224 QYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-G 282
Query: 204 RPS-----QSGYSEAGGMYA-PGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTV 256
+P+ + +++ + A PGA + +A P G+P G N +
Sbjct: 283 QPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNT--VL 340
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 316
LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G +
Sbjct: 341 LVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKM 400
Query: 317 FGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 369
+GK + V SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS
Sbjct: 401 YGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLS 460
Query: 370 TLPQDVTEEEIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 428
+P V EE++ + G V K F+ + K AL+ T E+A +AL+ H +LG
Sbjct: 461 NIPPSVAEEDLRTLFANTGGTVKAFKFFQDH--KMALLQMATVEEAIQALIDLHNYNLGE 518
Query: 429 SI-IRISFSQ 437
+ +R+SFS+
Sbjct: 519 NHHLRVSFSK 528
Score = 195 (73.7 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 35/91 (38%), Positives = 62/91 (68%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQ 91
V P +R + +Y+Q+S+H+EL T+ Q AQ
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQ 147
Score = 61 (26.5 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 368 LSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 426
+S L ++ VT + + + +G + K+ N K AL+ Q+ A+ + +
Sbjct: 342 VSNLNEEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKM 400
Query: 427 GGSIIRISFSQLQSIR 442
G IIR++ S+ Q+++
Sbjct: 401 YGKIIRVTLSKHQTVQ 416
>ZFIN|ZDB-GENE-060810-49 [details] [associations]
symbol:ptbp2b "polypyrimidine tract binding protein
2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060810-49 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:BX005269 IPI:IPI00855280
RefSeq:NP_001093477.1 UniGene:Dr.75530 SMR:A5PM68
Ensembl:ENSDART00000038648 GeneID:562434 KEGG:dre:562434 CTD:562434
OMA:YTAVTPQ NextBio:20884409 Uniprot:A5PM68
Length = 538
Score = 324 (119.1 bits), Expect = 1.7e-74, Sum P(3) = 1.7e-74
Identities = 83/246 (33%), Positives = 128/246 (52%)
Query: 203 GRPSQ--SGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSN 260
G PS + YS GG P + P + G G + +LVSN
Sbjct: 297 GTPSGMVTSYSSGGGF--PSSLGAISP-LSAAAAAAAAAGRVALSGHSVPGG--VLLVSN 351
Query: 261 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 320
LN + + LF LF +YG++ R+K+L NK D AL+QM DG QA+LA+ L G ++GK
Sbjct: 352 LNDEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMSDGNQAQLAMSHLNGQKMYGKI 411
Query: 321 LEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQ 373
+ V SKH + +G D T ++ +S L+RF + +KN++ P+ +HLS +P
Sbjct: 412 IRVTLSKHQTVQLPREGLDDQGLTKDFTSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPD 471
Query: 374 DVTEEEIVSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSII 431
+VTEE++ G V K F+ +K +L+ T E+A +AL+ H +G G +
Sbjct: 472 NVTEEDLRLLFSNSGGTVKAFKFFQ--DRKMSLLQMATAEEAIQALIDLHNYDMGRGHRL 529
Query: 432 RISFSQ 437
R+SFS+
Sbjct: 530 RVSFSK 535
Score = 273 (101.2 bits), Expect = 1.7e-74, Sum P(3) = 1.7e-74
Identities = 54/109 (49%), Positives = 74/109 (67%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
P+ +L + I +M YP+T++VL Q+FS G V KI+TF K+ FQAL+Q+ +A A+
Sbjct: 171 PSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAKL 230
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP 205
SL G+NIY+ CC L I FS L L V YNN++SRD+T P LPA G+P
Sbjct: 231 SLDGQNIYNSCCTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGD-GQP 278
Score = 199 (75.1 bits), Expect = 1.7e-74, Sum P(3) = 1.7e-74
Identities = 37/91 (40%), Positives = 62/91 (68%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +E+SE +++ L PFG +T ++ML+ KNQA L++ +A+ + +YT
Sbjct: 52 PSRVIHIRKLPNEVSETEVIALGLPFGKVTNILMLKGKNQAFLELGTEEAAVTMVNYYTA 111
Query: 64 VQPTIRGRNVYVQFSSHQELTT---MEQNAQ 91
V P +R V++Q+S+H+EL T + Q AQ
Sbjct: 112 VTPQVRNVPVFIQYSNHKELKTDSALNQRAQ 142
Score = 78 (32.5 bits), Expect = 7.8e-35, Sum P(2) = 7.8e-35
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 4 PSKVIHV--RNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQ 59
PS V+ + N+ + ++ + L Q+F FG + K++ NQ ALLQ D P +NA Q
Sbjct: 171 PSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSD-P--VNAQQ 227
Query: 60 FYTNVQPTIRGRNVY 74
+ ++ G+N+Y
Sbjct: 228 ----AKLSLDGQNIY 238
Score = 69 (29.3 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 269 DKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK--RLEVNF 325
D L +FS +G +++I +N AL+Q D A+ A L G ++ L ++F
Sbjct: 189 DVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAKLSLDGQNIYNSCCTLRIDF 248
Query: 326 SKHPNI 331
SK N+
Sbjct: 249 SKLVNL 254
Score = 67 (28.6 bits), Expect = 1.5e-41, Sum P(3) = 1.5e-41
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 362 PTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
P ++ +S L + VT + + + +G + K+ N K AL+ QA A+
Sbjct: 343 PGGVLLVSNLNDEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMSDGNQAQLAMSH 401
Query: 421 KHASSLGGSIIRISFSQLQSIR 442
+ + G IIR++ S+ Q+++
Sbjct: 402 LNGQKMYGKIIRVTLSKHQTVQ 423
Score = 61 (26.5 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + + VT + + + G+++ F N + QAL+ F A +A +
Sbjct: 172 SPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAKLS 231
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ S +RI FS+L ++
Sbjct: 232 LDGQNIYNSCCTLRIDFSKLVNL 254
Score = 59 (25.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 28/129 (21%), Positives = 60/129 (46%)
Query: 97 PNRILLVT-IHHMLYPITVEVLHQVFSPHGFVEKI-VTFQKSAGFQALIQYQLRPSAVVA 154
P +LLV+ ++ + +T + L +F +G V+++ + + K ALIQ A +A
Sbjct: 343 PGGVLLVSNLNDEM--VTPQSLFTLFGVYGDVQRVKILYNKKDS--ALIQMSDGNQAQLA 398
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNER--SRDFTNPNLPAEQKGRPSQSGYSE 212
S L G+ +Y ++ + +L +++ ++DFT+ P + +P +
Sbjct: 399 MSHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFTSS--PLHRFKKPGSKNFQN 456
Query: 213 AGGMYAPGA 221
++ P A
Sbjct: 457 ---IFPPSA 462
>UNIPROTKB|B4DSS8 [details] [associations]
symbol:PTBP2 "Polypyrimidine tract-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
HOVERGEN:HBG069548 HOGENOM:HOG000231699 EMBL:AL357150
IPI:IPI00254162 UniGene:Hs.269895 UniGene:Hs.596061 HGNC:HGNC:17662
ChiTaRS:PTBP2 OMA:QSQLAMS EMBL:AK299897 SMR:B4DSS8 STRING:B4DSS8
Ensembl:ENST00000394184 UCSC:uc010otz.1 Uniprot:B4DSS8
Length = 548
Score = 570 (205.7 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 133/363 (36%), Positives = 202/363 (55%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+
Sbjct: 177 TTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALL 234
Query: 144 QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG 203
QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G
Sbjct: 235 QYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-G 293
Query: 204 RPS-----QSGYSEAGGMYA------PGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTN 251
+P+ + +++ + PGA + +A P G+P G N
Sbjct: 294 QPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN 353
Query: 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 311
+LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L
Sbjct: 354 T--VLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 411
Query: 312 KGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTK 364
G ++GK + V SKH + +G D T ++ NS L+RF + +KN++ P+
Sbjct: 412 NGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSA 471
Query: 365 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHAS 424
+HLS +P V EE++ + G V F K AL+ T E+A +AL+ H
Sbjct: 472 TLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNY 531
Query: 425 SLG 427
+LG
Sbjct: 532 NLG 534
Score = 195 (73.7 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 35/91 (38%), Positives = 62/91 (68%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 68 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 127
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQ 91
V P +R + +Y+Q+S+H+EL T+ Q AQ
Sbjct: 128 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQ 158
Score = 61 (26.5 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 368 LSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 426
+S L ++ VT + + + +G + K+ N K AL+ Q+ A+ + +
Sbjct: 358 VSNLNEEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKM 416
Query: 427 GGSIIRISFSQLQSIR 442
G IIR++ S+ Q+++
Sbjct: 417 YGKIIRVTLSKHQTVQ 432
>UNIPROTKB|D4AB53 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:62047 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
IPI:IPI00390801 Ensembl:ENSRNOT00000030365 ArrayExpress:D4AB53
Uniprot:D4AB53
Length = 528
Score = 540 (195.1 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 128/353 (36%), Positives = 194/353 (54%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 178 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 235
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-QSGYSE 212
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS +
Sbjct: 236 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTMAA 294
Query: 213 AGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKL 271
A G+ P P G + PG+ G + +LVSNLN +R+ L
Sbjct: 295 AFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNS-VLLVSNLNPERVTPQSL 353
Query: 272 FNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAEL--AVHFLKGALLFGKRLEVNF---- 325
F LF +YG++ R+K+L NK ++ALVQM DG QA+L + A V
Sbjct: 354 FILFGVYGDVQRVKILFNKKENALVQMADGSQAQLDEPPERAQAAWEVSAHHPVKAPECA 413
Query: 326 SKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE 385
++ QG T +Y +S L+RF + +KN++ P+ +HLS +P V+E+++ S
Sbjct: 414 AREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFS 472
Query: 386 EHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 437
+G +V F +K AL+ + E+A +AL+ H LG + +R+SFS+
Sbjct: 473 SNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 525
Score = 211 (79.3 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 38/90 (42%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQAR 145
Score = 118 (46.6 bits), Expect = 0.00071, P = 0.00071
Identities = 36/111 (32%), Positives = 55/111 (49%)
Query: 341 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 396
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 397 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 445
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>MGI|MGI:97791 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0033119 "negative regulation of RNA
splicing" evidence=ISO] [GO:0036002 "pre-mRNA binding"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=ISO] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:97791 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548 GO:GO:0051148
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X52101 IPI:IPI00749991
UniGene:Mm.265610 ProteinModelPortal:P17225 SMR:P17225
MINT:MINT-1862139 STRING:P17225 PhosphoSite:P17225 PaxDb:P17225
PRIDE:P17225 ChiTaRS:PTBP1 CleanEx:MM_PTBP1 Genevestigator:P17225
GermOnline:ENSMUSG00000006498 Uniprot:P17225
Length = 527
Score = 535 (193.4 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 127/352 (36%), Positives = 192/352 (54%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 178 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 235
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-QSGYSE 212
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS +
Sbjct: 236 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLDQTMAA 294
Query: 213 AGGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLF 272
A G+ P P PG+ G + +LVSNLN +R+ LF
Sbjct: 295 AFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNS-VLLVSNLNPERVTPQSLF 353
Query: 273 NLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV--HFLKGALLFGKRLEVNFSKHPN 330
LF +YG++ R+K+L NK ++ALVQM DG QA+L + A V S+
Sbjct: 354 ILFGVYGDVQRVKILFNKKENALVQMADGSQAQLGEPPERAQAAREVSAHYTVQASECAA 413
Query: 331 ITQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEE 386
+G + T +Y +S L RF + +KN++ P+ +HLS +P V+E+++ S
Sbjct: 414 AREGQEDQGLTKDYGSSPL-RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSS 472
Query: 387 HGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 437
+G +V F +K AL+ + E+A +AL+ H LG + +R+SFS+
Sbjct: 473 NGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 524
Score = 208 (78.3 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 36/82 (43%), Positives = 59/82 (71%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT 85
V P +RG+ +Y+QFS+H+EL T
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKT 137
Score = 119 (46.9 bits), Expect = 0.00054, P = 0.00054
Identities = 36/111 (32%), Positives = 55/111 (49%)
Query: 341 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 396
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 397 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 445
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>ZFIN|ZDB-GENE-091116-1 [details] [associations]
symbol:ptbp3 "polypyrimidine tract binding protein 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-091116-1 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:9991
OMA:PPSVTMD EMBL:BX510369 EMBL:CR931761 IPI:IPI00493597
RefSeq:XP_001335967.1 UniGene:Dr.40305 Ensembl:ENSDART00000040308
Ensembl:ENSDART00000146727 GeneID:798982 KEGG:dre:798982
NextBio:20933630 Uniprot:E7FB37
Length = 522
Score = 313 (115.2 bits), Expect = 2.1e-71, Sum P(3) = 2.1e-71
Identities = 79/243 (32%), Positives = 125/243 (51%)
Query: 205 PSQSGYSEAGGMYAPGARAVAFP-QMXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLN 262
P +G++ A G G A P + G + G+T T +LVSNLN
Sbjct: 277 PGAAGFAPAIGFPQAGLSMQAMPGALGPLTIPSSAMTGRMAIHGMTPTAIHSVLLVSNLN 336
Query: 263 SDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLE 322
D I +LF LF +YG++ R+K+L NK ++AL+QM D QA+LA+ L G L+GK +
Sbjct: 337 PDSISPHELFILFGVYGDVHRVKILFNKKENALIQMADATQAQLAMSHLNGQRLYGKVIR 396
Query: 323 VNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDV 375
V SKH + +G + T ++ S L+RF + +KN++ P+ +HLS +P
Sbjct: 397 VTISKHQTVQLPREGQEDQGLTKDFSGSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPST 456
Query: 376 TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRIS 434
T++ + G V F +K AL+ + E+A +AL+ H LG + +R+S
Sbjct: 457 TDDFLKDLFASSGYTVKAFKFFQKDRKMALIQLGSVEEAIQALIHLHNHDLGENHHLRVS 516
Query: 435 FSQ 437
FS+
Sbjct: 517 FSK 519
Score = 277 (102.6 bits), Expect = 2.1e-71, Sum P(3) = 2.1e-71
Identities = 62/146 (42%), Positives = 92/146 (63%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+++EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 148 GQSP--VLRIIVENLYYPVSLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMNAHH 205
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QS 208
A+ +L G+NIY+GCC L ++FS L L V YNN++SRDFT +LP+ G+P+ Q+
Sbjct: 206 AKVALDGQNIYNGCCTLRVEFSKLTSLNVKYNNDKSRDFTRLDLPSGD-GQPTLDPTMQT 264
Query: 209 GYSEAGGMYAP--GAR----AVAFPQ 228
+ G + +P GA A+ FPQ
Sbjct: 265 AFGAPGIISSPYPGAAGFAPAIGFPQ 290
Score = 207 (77.9 bits), Expect = 2.1e-71, Sum P(3) = 2.1e-71
Identities = 39/90 (43%), Positives = 60/90 (66%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+HVR V E+SE +++ L PFG +T L+ML+ KNQA ++M +A+ + +YT
Sbjct: 27 PSRVLHVRKVPIEVSEAEVVSLGVPFGKVTNLLMLKGKNQAFIEMASEEAAMTMVNYYTT 86
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
P +R + VY+Q+S+H+EL T QGR
Sbjct: 87 ATPHVRNQPVYIQYSNHRELKTDNLPNQGR 116
Score = 67 (28.6 bits), Expect = 4.6e-43, Sum P(3) = 4.6e-43
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P ++ E+ +G + K+ N K+ AL+ QA A+ + L G +I
Sbjct: 337 PDSISPHELFILFGVYGDVHRVKIL-FNKKENALIQMADATQAQLAMSHLNGQRLYGKVI 395
Query: 432 RISFSQLQSIR 442
R++ S+ Q+++
Sbjct: 396 RVTISKHQTVQ 406
Score = 62 (26.9 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + L V+ E + + G+++ F N + QAL+ + A A V
Sbjct: 150 SPVLRIIVENLYYPVSLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMNAHHAKVA 209
Query: 421 KHASSL--GGSIIRISFSQLQSI 441
++ G +R+ FS+L S+
Sbjct: 210 LDGQNIYNGCCTLRVEFSKLTSL 232
Score = 56 (24.8 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 31/133 (23%), Positives = 54/133 (40%)
Query: 94 GDEPNRILLVTIHHMLYP--ITVEVLHQVFSPHGFVEKI-VTFQKSAGFQALIQYQLRPS 150
G P I V + L P I+ L +F +G V ++ + F K ALIQ
Sbjct: 320 GMTPTAIHSVLLVSNLNPDSISPHELFILFGVYGDVHRVKILFNKKEN--ALIQMADATQ 377
Query: 151 AVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNER--SRDFTNPNLPAEQKGRPSQS 208
A +A S L G+ +Y ++ I +L ++ ++DF+ P + +P
Sbjct: 378 AQLAMSHLNGQRLYGKVIRVTISKHQTVQLPREGQEDQGLTKDFSGS--PLHRFKKPGSK 435
Query: 209 GYSEAGGMYAPGA 221
+ ++ P A
Sbjct: 436 NFQN---IFPPSA 445
Score = 41 (19.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 104 TIHHMLYP--ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
T+H P T + L +F+ G+ K F + ALIQ A+ A L
Sbjct: 446 TLHLSNIPPSTTDDFLKDLFASSGYTVKAFKFFQKDRKMALIQLGSVEEAIQALIHLHNH 505
Query: 162 NIYDGCCQLDIQFS 175
++ + L + FS
Sbjct: 506 DLGENH-HLRVSFS 518
>UNIPROTKB|O95758 [details] [associations]
symbol:PTBP3 "Polypyrimidine tract-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0045595 "regulation of cell
differentiation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IDA] [GO:0009653 "anatomical structure
morphogenesis" evidence=TAS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0045595 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471105
GO:GO:0033119 GO:GO:0009653 GO:GO:0043249 TIGRFAMs:TIGR01649
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:AK001685 EMBL:AK302558 EMBL:CR749471
EMBL:AL158824 EMBL:AL359073 EMBL:BC039896 EMBL:BC044585
EMBL:BI463123 EMBL:AB023967 IPI:IPI00159072 IPI:IPI00384710
IPI:IPI00470879 IPI:IPI00640632 IPI:IPI00915287 IPI:IPI00915299
IPI:IPI00915400 RefSeq:NP_001157260.1 RefSeq:NP_001157262.1
RefSeq:NP_001231826.1 RefSeq:NP_001231827.1 RefSeq:NP_005147.3
UniGene:Hs.269988 ProteinModelPortal:O95758 SMR:O95758
IntAct:O95758 STRING:O95758 PhosphoSite:O95758 PaxDb:O95758
PRIDE:O95758 Ensembl:ENST00000210227 Ensembl:ENST00000334318
Ensembl:ENST00000343327 Ensembl:ENST00000374255
Ensembl:ENST00000374257 Ensembl:ENST00000458258 GeneID:9991
KEGG:hsa:9991 UCSC:uc004bfv.3 UCSC:uc004bfw.3 UCSC:uc004bfx.3
UCSC:uc004bfz.3 CTD:9991 GeneCards:GC09M114981 H-InvDB:HIX0008290
HGNC:HGNC:10253 MIM:607527 neXtProt:NX_O95758 PharmGKB:PA34625
OMA:PPSVTMD GenomeRNAi:9991 NextBio:37743 ArrayExpress:O95758
Bgee:O95758 CleanEx:HS_ROD1 Genevestigator:O95758
GermOnline:ENSG00000119314 Uniprot:O95758
Length = 552
Score = 318 (117.0 bits), Expect = 4.2e-71, Sum P(3) = 4.2e-71
Identities = 79/237 (33%), Positives = 124/237 (52%)
Query: 209 GYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDE 268
G+ +A G+ P P G PG +G +LV+NLN D I
Sbjct: 316 GFPQATGLSVPAVPGALGPLTITSSAVT---GRMAIPGASGIPGNSVLLVTNLNPDLITP 372
Query: 269 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 328
LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK L SKH
Sbjct: 373 HGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKH 432
Query: 329 PNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 381
+ +G + T ++ NS L+RF + +KN++ P+ +HLS +P VT +++
Sbjct: 433 QAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLK 492
Query: 382 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 437
+ E G V F +K AL+ + E+A +AL+ H LG + +R+SFS+
Sbjct: 493 NLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 549
Score = 276 (102.2 bits), Expect = 4.2e-71, Sum P(3) = 4.2e-71
Identities = 60/127 (47%), Positives = 79/127 (62%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 177 GQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHY 234
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS A
Sbjct: 235 AKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEP-PMA 292
Query: 214 GGMYAPG 220
APG
Sbjct: 293 AAFGAPG 299
Score = 192 (72.6 bits), Expect = 4.2e-71, Sum P(3) = 4.2e-71
Identities = 34/90 (37%), Positives = 60/90 (66%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 57 PSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTP 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
+ P +R + VY+Q+S+H+EL T Q R
Sbjct: 117 ITPHLRSQPVYIQYSNHRELKTDNLPNQAR 146
Score = 70 (29.7 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I + N+ + ++ L Q+F FG + K++ NQ ALLQ D P +NA Y +
Sbjct: 184 IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYAD-P--VNA--HYAKM- 237
Query: 66 PTIRGRNVY 74
+ G+N+Y
Sbjct: 238 -ALDGQNIY 245
Score = 58 (25.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + L VT E + + G+++ F N + QAL+ + A A +
Sbjct: 179 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMA 238
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ + +RI FS+L S+
Sbjct: 239 LDGQNIYNACCTLRIDFSKLTSL 261
Score = 53 (23.7 bits), Expect = 1.1e-39, Sum P(3) = 1.1e-39
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 387 HGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 442
+G + K+ N K+ ALV QA A+ L G ++R + S+ Q+++
Sbjct: 382 YGDVHRVKIM-FNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQ 436
Score = 40 (19.1 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 104 TIHHMLYP--ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
T+H P +TV+ L +F G K F + ALIQ A+ A L
Sbjct: 476 TLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 535
Query: 162 NIYDGCCQLDIQFS 175
++ + L + FS
Sbjct: 536 DLGENH-HLRVSFS 548
>ZFIN|ZDB-GENE-050320-141 [details] [associations]
symbol:ptbp2a "polypyrimidine tract binding protein
2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050320-141
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:CU896585 IPI:IPI00996240 Ensembl:ENSDART00000123275
Bgee:F1QG05 Uniprot:F1QG05
Length = 512
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 162/458 (35%), Positives = 258/458 (56%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +++SE +++ L PFG +T ++ L+ KNQA L++ +A+ + +Y+
Sbjct: 58 PSRVLHIRKLPNDVSEAEIIALGLPFGKVTNILTLKGKNQAFLELSTEEAAMTMVNYYSA 117
Query: 64 VQPTIRGRNVYVQFSSHQEL------------TTMEQNAQGRGDEPNRILLVTIHHMLYP 111
V P +R VY+Q+S+H+EL T+ ++ G G + +L + I +M YP
Sbjct: 118 VTPHVRSVPVYIQYSNHKELKTDNSSQSGGTSTSGSNSSDGSGSASSPVLRIIIDNMFYP 177
Query: 112 ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLD 171
+T++VL Q+FS G V KI+TF K+ FQAL+QY A A+ +L G+NIY+ CC L
Sbjct: 178 VTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQYNDPACAQQAKVALDGQNIYNACCTLR 237
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS---QSGYSEAGGMYAPGARAVAFPQ 228
I +S L L V YNN++SRD+T P LPA G+P+ + S+ G A
Sbjct: 238 IDYSKLVNLNVKYNNDKSRDYTRPELPAGD-GQPALDVAAALSKDSSSLL-GKIPGALSP 295
Query: 229 MXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR 288
+ G G + + +LVSNLN + + LF LF +YG++ R+K+L
Sbjct: 296 LSAAAAAAAAAGRVALSGHSSSGG--VLLVSNLNEEMVTPHSLFTLFGVYGDVQRVKILF 353
Query: 289 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYM 341
NK D AL+QM D QA+LA+ L G +F K + V SKH + G D T ++
Sbjct: 354 NKKDSALIQMADMNQAQLAMSHLNGQKMFSKIIRVTMSKHQTVQLPRDGLDDQGLTKDFT 413
Query: 342 NSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEI-VSHLEEHGSIVNTKLFEMNG 400
NS L+RF + +KN++ P+ +HLS +PQDVTEE++ V G++ K F+ +
Sbjct: 414 NSPLHRFKKPGSKNFQNIFPPSATLHLSNIPQDVTEEDLRVLFSNSGGTVKAFKFFQDH- 472
Query: 401 KKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 437
K AL+ T E+A + L+ H ++G + +++SFS+
Sbjct: 473 -KMALIQMSTIEEAIQCLIDLHNYNMGNNHHLKVSFSK 509
>RGD|727953 [details] [associations]
symbol:Smptb "polypyrimidine tract-binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:727953
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000380 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ HSSP:P26599 EMBL:CH474078 EMBL:AY223520
IPI:IPI00331913 RefSeq:NP_877970.1 UniGene:Rn.97598 SMR:Q80XZ1
Ensembl:ENSRNOT00000014611 GeneID:302879 KEGG:rno:302879
UCSC:RGD:727953 CTD:302879 NextBio:650282 Genevestigator:Q80XZ1
Uniprot:Q80XZ1
Length = 588
Score = 320 (117.7 bits), Expect = 6.2e-67, Sum P(3) = 6.2e-67
Identities = 86/248 (34%), Positives = 133/248 (53%)
Query: 199 AEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLV 258
A Q+ + S S + A GA +A + G PG+ G+ +LV
Sbjct: 346 AIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGS---PGV-GSP---VLLV 398
Query: 259 SNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFG 318
+NLN +++ LF LF YG++ R+K+L N+ ++ALVQM DG QAELA+ L G L+G
Sbjct: 399 ANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYG 458
Query: 319 KRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 371
K L + SKH ++ +G + T +Y NS L+RF + +KN++ P+ +HLS L
Sbjct: 459 KALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNL 518
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI- 430
P V+EEE+ + +G V F K AL+ + E+A +ALV H LG +
Sbjct: 519 PSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHH 578
Query: 431 IRISFSQL 438
+R+SFS++
Sbjct: 579 MRVSFSRM 586
Score = 254 (94.5 bits), Expect = 6.2e-67, Sum P(3) = 6.2e-67
Identities = 57/129 (44%), Positives = 78/129 (60%)
Query: 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159
+L + + + Y +T+EVLHQ+FS G V KI+T K+ FQAL+QY SA A+ L
Sbjct: 189 VLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLD 248
Query: 160 GRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSE-AGGMYA 218
G+NIYD CC L I FS L L V YNN++SRD+ P+LP++ +PS A + A
Sbjct: 249 GQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDS-QPSPVQVQNMASALPA 307
Query: 219 PGARAVAFP 227
P A + A P
Sbjct: 308 P-AMSSASP 315
Score = 169 (64.5 bits), Expect = 6.2e-67, Sum P(3) = 6.2e-67
Identities = 31/89 (34%), Positives = 57/89 (64%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
+PS+++H+ + ++E ++L L PFG ++ L+ LRAKNQA ++M SA + +YT
Sbjct: 26 DPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYT 85
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQ 91
+ P +RG+ V++QF+ ++EL +Q
Sbjct: 86 WMPPVLRGQPVHIQFAHYRELKVSSSPSQ 114
Score = 69 (29.3 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
Identities = 26/96 (27%), Positives = 44/96 (45%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELAVHFLKGA 314
+LV N R+ + L +FS +G +++I +N AL+Q AE A FL G
Sbjct: 192 ILVENYFY-RVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQ 250
Query: 315 LLFGK--RLEVNFSKHPNIT---QGADTHEYMNSNL 345
++ L ++FS N+ + +YM +L
Sbjct: 251 NIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDL 286
Score = 68 (29.0 bits), Expect = 4.9e-32, Sum P(2) = 4.9e-32
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKN--QALLQMQDVPSAINALQFYTNVQ 65
I V N + ++ L Q+F FG + K++ N QALLQ V SA A F
Sbjct: 192 ILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLF----- 246
Query: 66 PTIRGRNVY 74
+ G+N+Y
Sbjct: 247 --LDGQNIY 253
Score = 55 (24.4 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 419
SP ++ + L Q+ VT + +G + K+ N K+ ALV QA AL
Sbjct: 393 SPVLLV--ANLNQEKVTPRSLFILFGAYGDVHRVKIL-FNRKENALVQMADGSQAELALR 449
Query: 420 CKHASSLGGSIIRISFSQLQSIR 442
+ L G + I S+ QS++
Sbjct: 450 HLNGHKLYGKALCILLSKHQSVK 472
Score = 47 (21.6 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 104 TIHHMLYP--ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160
T+H P ++ E L +FS +G+ K F ALI+ A+ A L G
Sbjct: 512 TLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHG 570
>FB|FBgn0011224 [details] [associations]
symbol:heph "hephaestus" species:7227 "Drosophila
melanogaster" [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008187 "poly-pyrimidine tract binding" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0007219 "Notch
signaling pathway" evidence=IMP] [GO:0008586 "imaginal disc-derived
wing vein morphogenesis" evidence=IMP] [GO:0008587 "imaginal
disc-derived wing margin morphogenesis" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007319 "negative regulation of oskar mRNA
translation" evidence=IMP] [GO:0008103 "oocyte microtubule
cytoskeleton polarization" evidence=IMP] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0000900 "translation repressor activity,
nucleic acid binding" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:2001020 "regulation of response to DNA damage stimulus"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007291 "sperm individualization" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005634
GO:GO:0005737 GO:GO:0008103 GO:GO:0000166 GO:GO:0008586
Gene3D:3.30.70.330 GO:GO:0007291 GO:GO:0003730 GO:GO:0030529
GO:GO:0000398 GO:GO:0000900 GO:GO:0008587 GO:GO:0007319
GO:GO:0008187 CTD:9843 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 KO:K14948 UniGene:Dm.19417
GeneID:48571 KEGG:dme:Dmel_CG31000 FlyBase:FBgn0011224 ChiTaRS:HEPH
GenomeRNAi:48571 NextBio:839481 HSSP:P26599 EMBL:AY052367
EMBL:BT030984 RefSeq:NP_001163787.1 RefSeq:NP_001163790.1
RefSeq:NP_788780.1 SMR:Q95UI6 STRING:Q95UI6
EnsemblMetazoa:FBtr0085881 EnsemblMetazoa:FBtr0300263
EnsemblMetazoa:FBtr0300266 UCSC:CG31000-RH InParanoid:Q95UI6
Uniprot:Q95UI6
Length = 789
Score = 294 (108.6 bits), Expect = 2.1e-65, Sum P(3) = 2.1e-65
Identities = 64/128 (50%), Positives = 82/128 (64%)
Query: 89 NAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
NA G G PN +L V + ++YP+++++LHQ+F +G V KIVTF K+ FQALIQY
Sbjct: 397 NAAG-G--PNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDA 453
Query: 149 PSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQS 208
SA A+S L G+NIY+GCC L I S L L V YNN++SRDFTNP LP G P
Sbjct: 454 NSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPP---GEPGVD 510
Query: 209 GYSEAGGM 216
AGG+
Sbjct: 511 IMPTAGGL 518
Score = 275 (101.9 bits), Expect = 2.1e-65, Sum P(3) = 2.1e-65
Identities = 85/268 (31%), Positives = 128/268 (47%)
Query: 193 TNPNLPAEQKGRPSQSGYSEAGGMYAPG-----ARAVAFP-------QMXXXXXXXXXFG 240
TN L + RPS SG G+ APG A + P +
Sbjct: 521 TNDLLLIAARQRPSLSGDKIVNGLGAPGVLPPFALGLGTPLTGGYNNALPNLAAFSLANS 580
Query: 241 GGLP---PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQ 297
G L P + G ++ +LVSNLN + + D LF LF +YG++ R+K+L NK D AL+Q
Sbjct: 581 GALQTTAPAMRGYSN--VLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQ 638
Query: 298 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNR 350
M + QA LA+ L L+GK + V SKH + +G T +Y + L+RF +
Sbjct: 639 MAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKK 698
Query: 351 NAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET 410
+KNY+ P+ +HLS +P +E++I + V F +K AL+ +
Sbjct: 699 PGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRKMALLQLLS 758
Query: 411 EEQATEALVCKHASSLGGSI-IRISFSQ 437
E+A AL+ H L S +R+SFS+
Sbjct: 759 VEEAVLALIKMHNHQLSESNHLRVSFSK 786
Score = 202 (76.2 bits), Expect = 2.1e-65, Sum P(3) = 2.1e-65
Identities = 40/85 (47%), Positives = 59/85 (69%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ + SKVIH+RN+ +E E D++ L PFG +T +++L+ KNQA ++M D SA + +
Sbjct: 250 IAKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSC 309
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTT 85
YT P +RGR VYVQFS+H+EL T
Sbjct: 310 YTVTPPQMRGRMVYVQFSNHRELKT 334
Score = 70 (29.7 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 4 PSKVIHV--RNVGHEISENDLLQLFQPFGVITKLVMLRAKN--QALLQMQDVPSAINALQ 59
P+ V+ V ++ + +S + L Q+FQ +G + K+V N QAL+Q D SA +A
Sbjct: 402 PNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHA-- 459
Query: 60 FYTNVQPTIRGRNVY 74
+ + G+N+Y
Sbjct: 460 -----KSLLDGQNIY 469
Score = 54 (24.1 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 23/116 (19%), Positives = 45/116 (38%)
Query: 330 NITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL--STLPQDVTEEEIVSHLEEH 387
N +D++ M N NA N P ++ + +L V+ + + + +
Sbjct: 370 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRY 429
Query: 388 GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL--GGSIIRISFSQLQSI 441
G ++ F N QAL+ + A A ++ G +RI S+L ++
Sbjct: 430 GKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTAL 485
Score = 53 (23.7 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 363 TKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 421
+ ++ +S L ++ VT + + + +G + K+ N K AL+ +QA A+
Sbjct: 594 SNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKIL-YNKKDSALIQMAEPQQAYLAMSHL 652
Query: 422 HASSLGGSIIRISFSQLQSIR 442
L G IR+ S+ Q+++
Sbjct: 653 DKLRLWGKPIRVMASKHQAVQ 673
>UNIPROTKB|F1PXP9 [details] [associations]
symbol:PTBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 OMA:PPSVTMD
EMBL:AAEX03008069 EMBL:AAEX03008070 Ensembl:ENSCAFT00000004839
Uniprot:F1PXP9
Length = 521
Score = 316 (116.3 bits), Expect = 5.6e-65, Sum P(3) = 5.6e-65
Identities = 79/237 (33%), Positives = 123/237 (51%)
Query: 209 GYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDE 268
G+ +A G+ P P G PG G +LV+NLN D I
Sbjct: 285 GFHQATGISVPAVPGALGPLTITSSAVT---GRMAIPGAGGLPGNSVLLVTNLNPDLITP 341
Query: 269 DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 328
LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK L SKH
Sbjct: 342 HGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKH 401
Query: 329 PNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 381
+ +G + T ++ NS L+RF + +KN++ P+ +HLS +P VT +++
Sbjct: 402 QAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLK 461
Query: 382 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 437
+ E G V F +K AL+ + E+A +AL+ H LG + +R+SFS+
Sbjct: 462 NLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 518
Score = 276 (102.2 bits), Expect = 5.6e-65, Sum P(3) = 5.6e-65
Identities = 60/127 (47%), Positives = 79/127 (62%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 146 GQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHY 203
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS A
Sbjct: 204 AKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEP-PMA 261
Query: 214 GGMYAPG 220
APG
Sbjct: 262 AAFGAPG 268
Score = 138 (53.6 bits), Expect = 5.6e-65, Sum P(3) = 5.6e-65
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M S ++ L F+T
Sbjct: 26 PSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLKMNKENSQVSRLFFHTP 85
Query: 64 VQPTIRGRNVYVQFSSHQEL 83
P + YV S +E+
Sbjct: 86 AFPYLYLIPKYVSISLEEEI 105
Score = 70 (29.7 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I + N+ + ++ L Q+F FG + K++ NQ ALLQ D P +NA Y +
Sbjct: 153 IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYAD-P--VNA--HYAKM- 206
Query: 66 PTIRGRNVY 74
+ G+N+Y
Sbjct: 207 -ALDGQNIY 214
Score = 58 (25.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + L VT E + + G+++ F N + QAL+ + A A +
Sbjct: 148 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMA 207
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ + +RI FS+L S+
Sbjct: 208 LDGQNIYNACCTLRIDFSKLTSL 230
Score = 53 (23.7 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 387 HGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 442
+G + K+ N K+ ALV QA A+ L G ++R + S+ Q+++
Sbjct: 351 YGDVHRVKIM-FNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQ 405
Score = 43 (20.2 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 20/74 (27%), Positives = 31/74 (41%)
Query: 104 TIHHMLYP--ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
T+H P +TV+ L +F+ G K F + ALIQ A+ A L
Sbjct: 445 TLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 504
Query: 162 NIYDGCCQLDIQFS 175
++ + L + FS
Sbjct: 505 DLGENH-HLRVSFS 517
>DICTYBASE|DDB_G0284321 [details] [associations]
symbol:DDB_G0284321 "putative polypyrimidine tract
binding protein (PTBP1)" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0284321 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000064 eggNOG:NOG263741 OMA:DATENEI
RefSeq:XP_638677.1 ProteinModelPortal:Q54PW8 SMR:Q54PW8
EnsemblProtists:DDB0233645 GeneID:8624506 KEGG:ddi:DDB_G0284321
InParanoid:Q54PW8 Uniprot:Q54PW8
Length = 892
Score = 401 (146.2 bits), Expect = 4.5e-63, Sum P(2) = 4.5e-63
Identities = 81/190 (42%), Positives = 128/190 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PSKVIH+RN+ + ++ ++ + +PFGVI L++++ KNQAL+QM ++ SA + +Q+YT
Sbjct: 311 PSKVIHLRNLPSDCTDQEIKSMVEPFGVIENLIIIKGKNQALVQMVELSSATSFIQYYTT 370
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
VQ +IR + +Y QFS+ +E++ ++ PN ILLVTI + Y IT++ L +VFS
Sbjct: 371 VQGSIRSKIIYAQFSNRKEISPAKET-------PNCILLVTISNYFYNITIDELFKVFSH 423
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
+G + KI+ F KS +Q+LI+ + A A++ L G NI + C L IQ+S+L L++
Sbjct: 424 YGTILKILLFTKSGNYQSLIEMKTPEEATKAKNVLDGVNI-NNSCSLKIQYSSLTSLKIK 482
Query: 184 YNNERSRDFT 193
YNNE+SRDFT
Sbjct: 483 YNNEKSRDFT 492
Score = 280 (103.6 bits), Expect = 4.5e-63, Sum P(2) = 4.5e-63
Identities = 68/203 (33%), Positives = 106/203 (52%)
Query: 248 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA 307
+ T + C ++V+ L + + D LF LF +YG+ +R+K+L N+ D AL+QM QAEL
Sbjct: 680 SSTQNGCVLIVAGLPIENVSPDDLFTLFGIYGDPVRVKILFNRKDTALIQMNTAQQAELV 739
Query: 308 VHFLKGALLFGKRLEVNFSKH-------PNITQGADTHEYMNSNLNRFNRNAAKNYRYCC 360
+ L G + VN SKH P G T ++ S ++RF +KNY+
Sbjct: 740 LQLLHSFPFKGHSIRVNLSKHKVVQLPRPGEDNGELTKDFTGSPMHRFKLPGSKNYQNIH 799
Query: 361 SPTKMIHLSTLPQ----DVTE-EEIVSHL-EEHGSIVNTKLFEMNGKKQALVLFETEEQA 414
P+ +HLS LP D+ E E+ + L G I + K F+ N K AL+ + EQA
Sbjct: 800 PPSSFLHLSNLPDPNGGDMAEIEKKIKQLFTSQGEIKSFKFFQ-NDMKMALIEMGSLEQA 858
Query: 415 TEALVCKHASSLGGSIIRISFSQ 437
+LV H S+G +++SF++
Sbjct: 859 INSLVTLHGCSIGDQFVKVSFAK 881
Score = 77 (32.2 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 26/109 (23%), Positives = 56/109 (51%)
Query: 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVML-RAKN-QALLQMQDVPSAINALQFYTNV 64
++ + N + I+ ++L ++F +G I K+++ ++ N Q+L++M+ A A V
Sbjct: 402 LVTISNYFYNITIDELFKVFSHYGTILKILLFTKSGNYQSLIEMKTPEEATKAKNVLDGV 461
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPIT 113
++ +Q+SS LT+++ +E +R V HH++ P T
Sbjct: 462 NIN-NSCSLKIQYSS---LTSLKIKYN---NEKSRDFTVMDHHLIDPTT 503
>WB|WBGene00004207 [details] [associations]
symbol:ptb-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 EMBL:Z36948 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 eggNOG:NOG263741 HOGENOM:HOG000231699
OMA:IKMHNHK PIR:A88299 PIR:T20381 RefSeq:NP_741041.1 HSSP:P26599
ProteinModelPortal:Q18999 SMR:Q18999 DIP:DIP-24857N IntAct:Q18999
MINT:MINT-1089938 STRING:Q18999 PaxDb:Q18999 PRIDE:Q18999
EnsemblMetazoa:D2089.4a GeneID:174647 KEGG:cel:CELE_D2089.4
UCSC:D2089.4a CTD:174647 WormBase:D2089.4a InParanoid:Q18999
NextBio:884900 ArrayExpress:Q18999 Uniprot:Q18999
Length = 615
Score = 390 (142.3 bits), Expect = 1.3e-62, Sum P(2) = 1.3e-62
Identities = 82/211 (38%), Positives = 133/211 (63%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
SKV+HVRN+ ++ + +L+QL +G ++ +ML+ K+QA ++ ++ SA + T V
Sbjct: 120 SKVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSGMTAV 179
Query: 65 QPTIRGRNVYVQFSSHQEL--------TTMEQNAQGR------G--DEPNRILLVTIHHM 108
IRGR ++ Q+S+H+EL + E A G G +PN +L I +M
Sbjct: 180 PIQIRGRTLFAQYSTHRELKFDKNKAISDTESVANGSVSNFEVGTQQQPNSVLRTIIENM 239
Query: 109 LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCC 168
++P++++VL+Q+F+ +G V +I+TF K+ FQAL+Q SA +A+ L+ +N+Y+GCC
Sbjct: 240 MFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYNGCC 299
Query: 169 QLDIQFSNLDELQVNYNNERSRDFTNPNLPA 199
L I +S L L V YNN++SRD+TNPNLPA
Sbjct: 300 TLRIDYSKLSTLNVKYNNDKSRDYTNPNLPA 330
Score = 275 (101.9 bits), Expect = 1.3e-62, Sum P(2) = 1.3e-62
Identities = 66/190 (34%), Positives = 101/190 (53%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 315
+LVSNL+ ++ D LF LF +YG+++R+K+L NK D+AL+Q + QA+LA+ L
Sbjct: 423 ILVSNLHEMKVTTDALFTLFGVYGDVMRVKILYNKKDNALIQYSEPQQAQLALTHLDKVK 482
Query: 316 LFGKRLEVNFSKHPNITQGAD-------THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 368
+ + V SKH N+ + T +Y +S L+RF + +KNY P +HL
Sbjct: 483 WHDRLIRVAPSKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHL 542
Query: 369 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 428
S +P V+EE++ E G V F K AL E E A +AL+ H L
Sbjct: 543 SNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHKLAE 602
Query: 429 SI-IRISFSQ 437
+ +R+SFS+
Sbjct: 603 NAHLRVSFSK 612
Score = 53 (23.7 bits), Expect = 3.0e-39, Sum P(2) = 3.0e-39
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 363 TKMIHLSTLPQ-DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 421
T +I +S L + VT + + + +G ++ K+ N K AL+ + +QA AL
Sbjct: 420 TPVILVSNLHEMKVTTDALFTLFGVYGDVMRVKIL-YNKKDNALIQYSEPQQAQLALTHL 478
Query: 422 HASSLGGSIIRISFSQLQSIR 442
+IR++ S+ +++
Sbjct: 479 DKVKWHDRLIRVAPSKHTNVQ 499
>UNIPROTKB|F1S549 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP085536 EMBL:CU137694
Ensembl:ENSSSCT00000007533 Uniprot:F1S549
Length = 401
Score = 342 (125.4 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 85/241 (35%), Positives = 129/241 (53%)
Query: 208 SGYSEAGGMYA--PGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSD 264
S YS+ G A PGA + +A P G+P G N +LVSNLN +
Sbjct: 160 SDYSKLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNT--VLLVSNLNEE 217
Query: 265 RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 324
+ LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V
Sbjct: 218 MVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVT 277
Query: 325 FSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTE 377
SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V E
Sbjct: 278 LSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAE 337
Query: 378 EEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFS 436
E++ + G V F K AL+ T E+A +AL+ H +LG + +R+SFS
Sbjct: 338 EDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFS 397
Query: 437 Q 437
+
Sbjct: 398 K 398
Score = 279 (103.3 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 57/123 (46%), Positives = 82/123 (66%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+
Sbjct: 22 TTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALL 79
Query: 144 QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG 203
QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G
Sbjct: 80 QYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-G 138
Query: 204 RPS 206
+P+
Sbjct: 139 QPA 141
Score = 69 (29.3 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I + N+ + ++ + L Q+F FG + K++ NQ ALLQ D P +NA Q +
Sbjct: 39 IIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGD-P--VNAQQ----AK 91
Query: 66 PTIRGRNVY 74
+ G+N+Y
Sbjct: 92 LALDGQNIY 100
Score = 61 (26.5 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 368 LSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 426
+S L ++ VT + + + +G + K+ N K AL+ Q+ A+ + +
Sbjct: 211 VSNLNEEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKM 269
Query: 427 GGSIIRISFSQLQSIR 442
G IIR++ S+ Q+++
Sbjct: 270 YGKIIRVTLSKHQTVQ 285
>UNIPROTKB|I3LDE4 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:QSQLAMS EMBL:FP085536 EMBL:CU137694 Ensembl:ENSSSCT00000022271
Uniprot:I3LDE4
Length = 411
Score = 342 (125.4 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 85/250 (34%), Positives = 133/250 (53%)
Query: 198 PAEQKGRP-SQSGYSEAGGMYAPGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCT 255
P + GR S++G ++ PGA + +A P G+P G N
Sbjct: 161 PRKGMGRAGSRNGGRKSKLRAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNT--V 218
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 315
+LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G
Sbjct: 219 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 278
Query: 316 LFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 368
++GK + V SKH + +G D T ++ NS L+RF + +KN++ P+ +HL
Sbjct: 279 MYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHL 338
Query: 369 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 428
S +P V EE++ + G V F K AL+ T E+A +AL+ H +LG
Sbjct: 339 SNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGE 398
Query: 429 SI-IRISFSQ 437
+ +R+SFS+
Sbjct: 399 NHHLRVSFSK 408
Score = 279 (103.3 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 57/123 (46%), Positives = 82/123 (66%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+
Sbjct: 23 TTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALL 80
Query: 144 QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG 203
QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G
Sbjct: 81 QYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-G 139
Query: 204 RPS 206
+P+
Sbjct: 140 QPA 142
Score = 69 (29.3 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I + N+ + ++ + L Q+F FG + K++ NQ ALLQ D P +NA Q +
Sbjct: 40 IIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGD-P--VNAQQ----AK 92
Query: 66 PTIRGRNVY 74
+ G+N+Y
Sbjct: 93 LALDGQNIY 101
Score = 61 (26.5 bits), Expect = 8.1e-26, Sum P(2) = 8.1e-26
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 368 LSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 426
+S L ++ VT + + + +G + K+ N K AL+ Q+ A+ + +
Sbjct: 221 VSNLNEEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKM 279
Query: 427 GGSIIRISFSQLQSIR 442
G IIR++ S+ Q+++
Sbjct: 280 YGKIIRVTLSKHQTVQ 295
>UNIPROTKB|I3LP39 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP085536 EMBL:CU137694
Ensembl:ENSSSCT00000024275 Uniprot:I3LP39
Length = 405
Score = 336 (123.3 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 80/228 (35%), Positives = 123/228 (53%)
Query: 219 PGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277
PGA + +A P G+P G N +LVSNLN + + LF LF +
Sbjct: 177 PGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNT--VLLVSNLNEEMVTPQSLFTLFGV 234
Query: 278 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QG 334
YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH + +G
Sbjct: 235 YGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREG 294
Query: 335 AD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI 390
D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++ + G
Sbjct: 295 LDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGT 354
Query: 391 VNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 437
V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 355 VKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 402
Score = 279 (103.3 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 57/123 (46%), Positives = 82/123 (66%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+
Sbjct: 22 TTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALL 79
Query: 144 QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG 203
QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G
Sbjct: 80 QYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-G 138
Query: 204 RPS 206
+P+
Sbjct: 139 QPA 141
Score = 69 (29.3 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I + N+ + ++ + L Q+F FG + K++ NQ ALLQ D P +NA Q +
Sbjct: 39 IIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGD-P--VNAQQ----AK 91
Query: 66 PTIRGRNVY 74
+ G+N+Y
Sbjct: 92 LALDGQNIY 100
Score = 61 (26.5 bits), Expect = 5.4e-26, Sum P(2) = 5.4e-26
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 368 LSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL 426
+S L ++ VT + + + +G + K+ N K AL+ Q+ A+ + +
Sbjct: 215 VSNLNEEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKM 273
Query: 427 GGSIIRISFSQLQSIR 442
G IIR++ S+ Q+++
Sbjct: 274 YGKIIRVTLSKHQTVQ 289
>MGI|MGI:1923334 [details] [associations]
symbol:Ptbp3 "polypyrimidine tract binding protein 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=ISO] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0045595 "regulation of cell differentiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923334
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043249 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 OrthoDB:EOG4GMTXQ CTD:9991 EMBL:AK033732
EMBL:AK088560 EMBL:AL824704 EMBL:BC006638 EMBL:BC057641
IPI:IPI00221840 IPI:IPI00975110 RefSeq:NP_659153.2
RefSeq:NP_835458.1 UniGene:Mm.331640 ProteinModelPortal:Q8BHD7
SMR:Q8BHD7 STRING:Q8BHD7 PhosphoSite:Q8BHD7 PaxDb:Q8BHD7
PRIDE:Q8BHD7 Ensembl:ENSMUST00000030076 Ensembl:ENSMUST00000148331
Ensembl:ENSMUST00000172768 GeneID:230257 KEGG:mmu:230257
UCSC:uc008szw.2 UCSC:uc008szx.2 InParanoid:A2ANH0 ChiTaRS:PTBP3
NextBio:379861 Bgee:Q8BHD7 CleanEx:MM_ROD1 Genevestigator:Q8BHD7
GermOnline:ENSMUSG00000028382 Uniprot:Q8BHD7
Length = 523
Score = 316 (116.3 bits), Expect = 5.4e-54, Sum P(2) = 5.4e-54
Identities = 78/236 (33%), Positives = 123/236 (52%)
Query: 210 YSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 269
+ +A G+ P P G PG +G +LV+NLN D I
Sbjct: 288 FPQAAGLSVPAVPGALGPLTLTSSAVS---GRMAIPGASGMPGNSVLLVTNLNPDFITPH 344
Query: 270 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329
LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK L SKH
Sbjct: 345 GLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQ 404
Query: 330 NIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 382
+ +G + T ++ NS L+RF + +KN++ P+ +HLS +P VT +++ +
Sbjct: 405 AVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKN 464
Query: 383 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 437
E G V F +K AL+ + E+A +AL+ H LG + +R+SFS+
Sbjct: 465 LFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520
Score = 285 (105.4 bits), Expect = 5.4e-54, Sum P(2) = 5.4e-54
Identities = 75/204 (36%), Positives = 111/204 (54%)
Query: 36 VMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD 95
V ++ N L+ ++P+ A Q ++ N+ + ++ E T + G
Sbjct: 97 VYIQYSNHRELKTDNLPNQARA-QAALQAVSAVQSGNLSLPGATANEGTLLP------GQ 149
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 150 SP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAK 207
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGY 210
+L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS + +
Sbjct: 208 MALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAF 266
Query: 211 SEAGGMYAP--GAR----AVAFPQ 228
G M +P GA A+AFPQ
Sbjct: 267 GAPGIMSSPYAGAAGFAPAIAFPQ 290
Score = 193 (73.0 bits), Expect = 2.6e-44, Sum P(2) = 2.6e-44
Identities = 35/90 (38%), Positives = 60/90 (66%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 28 PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTP 87
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +R + VY+Q+S+H+EL T Q R
Sbjct: 88 VTPHLRSQPVYIQYSNHRELKTDNLPNQAR 117
Score = 70 (29.7 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I + N+ + ++ L Q+F FG + K++ NQ ALLQ D P +NA Q+ +
Sbjct: 155 IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYAD-P--VNA-QY---AK 207
Query: 66 PTIRGRNVY 74
+ G+N+Y
Sbjct: 208 MALDGQNIY 216
Score = 61 (26.5 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 29/127 (22%), Positives = 55/127 (43%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKI-VTFQKSAGFQALIQYQLRPSAVVARS 156
N +LLVT + + IT L +F +G V ++ + F K AL+Q A +A +
Sbjct: 328 NSVLLVTNLNPDF-ITPHGLFILFGVYGDVHRVKIMFNKKEN--ALVQMADASQAQLAMN 384
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNER--SRDFTNPNLPAEQKGRPSQSGYSEAG 214
L G+ +Y + + +L ++ ++DF+N P + +P +
Sbjct: 385 HLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNS--PLHRFKKPGSKNFQN-- 440
Query: 215 GMYAPGA 221
++ P A
Sbjct: 441 -IFPPSA 446
Score = 59 (25.8 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + L VT E + + G+++ F N + QAL+ + A A +
Sbjct: 150 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMA 209
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ + +RI FS+L S+
Sbjct: 210 LDGQNIYNACCTLRIDFSKLTSL 232
Score = 54 (24.1 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P +T + +G + K+ N K+ ALV QA A+ L G ++
Sbjct: 338 PDFITPHGLFILFGVYGDVHRVKIM-FNKKENALVQMADASQAQLAMNHLSGQRLYGKVL 396
Query: 432 RISFSQLQSIR 442
R + S+ Q+++
Sbjct: 397 RATLSKHQAVQ 407
Score = 40 (19.1 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 104 TIHHMLYP--ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
T+H P +T++ L +F+ G K F + ALIQ A+ A L
Sbjct: 447 TLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 506
Query: 162 NIYDGCCQLDIQFS 175
++ + L + FS
Sbjct: 507 DLGENH-HLRVSFS 519
>RGD|621671 [details] [associations]
symbol:Ptbp3 "polypyrimidine tract binding protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=IEA;ISO] [GO:0043249
"erythrocyte maturation" evidence=IEA] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:621671 GO:GO:0005634 GO:GO:0045595 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0033119
GO:GO:0043249 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ CTD:9991 OMA:PPSVTMD EMBL:AB023966
IPI:IPI00326775 RefSeq:NP_112636.1 UniGene:Rn.162818
ProteinModelPortal:Q9Z118 SMR:Q9Z118 STRING:Q9Z118 PRIDE:Q9Z118
Ensembl:ENSRNOT00000022107 GeneID:83515 KEGG:rno:83515
UCSC:RGD:621671 InParanoid:Q9Z118 NextBio:615974
Genevestigator:Q9Z118 GermOnline:ENSRNOG00000016334 Uniprot:Q9Z118
Length = 523
Score = 314 (115.6 bits), Expect = 1.4e-53, Sum P(2) = 1.4e-53
Identities = 86/258 (33%), Positives = 134/258 (51%)
Query: 203 GRPS--QSGYSEAGGMYAPGARAVAFPQ------------MXXXXXXXXXFGGGLP-PGI 247
G P S Y+ A G +AP A+AFPQ + G + PG
Sbjct: 267 GAPGIMSSPYAGAAG-FAP---AIAFPQAAGLSVSAVPGALGPLTLTSSAVSGRMAIPGA 322
Query: 248 TGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA 307
+G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA++A
Sbjct: 323 SGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIA 382
Query: 308 VHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCC 360
++ L G L+GK L SKH + +G + T ++ NS L+RF + +KN++
Sbjct: 383 MNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIF 442
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+
Sbjct: 443 PPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 502
Query: 421 KHASSLGGSI-IRISFSQ 437
H LG + +R+SFS+
Sbjct: 503 LHNHDLGENHHLRVSFSK 520
Score = 286 (105.7 bits), Expect = 1.4e-53, Sum P(2) = 1.4e-53
Identities = 75/204 (36%), Positives = 111/204 (54%)
Query: 36 VMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD 95
V ++ N L+ ++P+ A Q ++ N+ + ++ E T + G
Sbjct: 97 VYIQYSNHRELKTDNLPNQARA-QAALQAVSAVQSGNLSLPGATSNEGTLLP------GQ 149
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 150 SP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAK 207
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGY 210
+L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS + +
Sbjct: 208 MALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAF 266
Query: 211 SEAGGMYAP--GAR----AVAFPQ 228
G M +P GA A+AFPQ
Sbjct: 267 GAPGIMSSPYAGAAGFAPAIAFPQ 290
Score = 193 (73.0 bits), Expect = 8.3e-44, Sum P(2) = 8.3e-44
Identities = 35/90 (38%), Positives = 60/90 (66%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 28 PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTP 87
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +R + VY+Q+S+H+EL T Q R
Sbjct: 88 VTPHLRSQPVYIQYSNHRELKTDNLPNQAR 117
Score = 70 (29.7 bits), Expect = 6.7e-31, Sum P(2) = 6.7e-31
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I + N+ + ++ L Q+F FG + K++ NQ ALLQ D P +NA Q+ +
Sbjct: 155 IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYAD-P--VNA-QY---AK 207
Query: 66 PTIRGRNVY 74
+ G+N+Y
Sbjct: 208 MALDGQNIY 216
Score = 63 (27.2 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 29/127 (22%), Positives = 55/127 (43%)
Query: 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKI-VTFQKSAGFQALIQYQLRPSAVVARS 156
N +LLVT + + IT L +F +G V ++ + F K AL+Q A +A +
Sbjct: 328 NSVLLVTNLNPDF-ITPHGLFILFGVYGDVHRVKIMFNKKEN--ALVQMADASQAQIAMN 384
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNER--SRDFTNPNLPAEQKGRPSQSGYSEAG 214
L G+ +Y + + +L ++ ++DF+N P + +P +
Sbjct: 385 HLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNS--PLHRFKKPGSKNFQN-- 440
Query: 215 GMYAPGA 221
++ P A
Sbjct: 441 -IFPPSA 446
Score = 59 (25.8 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + L VT E + + G+++ F N + QAL+ + A A +
Sbjct: 150 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMA 209
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ + +RI FS+L S+
Sbjct: 210 LDGQNIYNACCTLRIDFSKLTSL 232
Score = 54 (24.1 bits), Expect = 9.9e-25, Sum P(2) = 9.9e-25
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P +T + +G + K+ N K+ ALV QA A+ L G ++
Sbjct: 338 PDFITPHGLFILFGVYGDVHRVKIM-FNKKENALVQMADASQAQIAMNHLSGQRLYGKVL 396
Query: 432 RISFSQLQSIR 442
R + S+ Q+++
Sbjct: 397 RATLSKHQAVQ 407
Score = 40 (19.1 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 104 TIHHMLYP--ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
T+H P +T++ L +F+ G K F + ALIQ A+ A L
Sbjct: 447 TLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 506
Query: 162 NIYDGCCQLDIQFS 175
++ + L + FS
Sbjct: 507 DLGENH-HLRVSFS 519
>ZFIN|ZDB-GENE-040426-710 [details] [associations]
symbol:hnrpl "heterogeneous nuclear
ribonucleoprotein L" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-710 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BX547938 HOVERGEN:HBG105786
KO:K13159 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOGENOM:HOG000293298 OMA:RPTSVKV OrthoDB:EOG4RFKSD EMBL:BC045336
IPI:IPI00502192 RefSeq:NP_957393.1 UniGene:Dr.76170 SMR:Q7ZW09
STRING:Q7ZW09 Ensembl:ENSDART00000051184 GeneID:394074
KEGG:dre:394074 CTD:394074 InParanoid:Q7ZW09 NextBio:20815031
Uniprot:Q7ZW09
Length = 536
Score = 346 (126.9 bits), Expect = 4.3e-52, Sum P(2) = 4.3e-52
Identities = 75/199 (37%), Positives = 124/199 (62%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+HVR + I+E DL++ Q FG I+ +V++ K QAL++ +D+ A NA+ +
Sbjct: 37 TLPSLVVHVRGLIDGITEADLVEALQEFGTISYVVLMPKKRQALVEFEDMNGASNAVTYA 96
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
N Q I GR Y+ +S+ Q+++ + R N +LL+TI + +YPIT +VL+ +
Sbjct: 97 NNNQIYIAGRPSYINYSTSQKISRPTDSDDTRS--VNNVLLLTIMNPIYPITSDVLYTIC 154
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+ G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 155 NNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 213
Query: 182 VNYNNERSRDFTNPNLPAE 200
V N++ + D+TNPNL +
Sbjct: 214 VFKNDQDTWDYTNPNLSGQ 232
Score = 217 (81.4 bits), Expect = 4.3e-52, Sum P(2) = 4.3e-52
Identities = 66/196 (33%), Positives = 97/196 (49%)
Query: 241 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 300
G PP D V+V L+ +I+ D++FN+F LYGN+ R+K +++KP A+V+MGD
Sbjct: 316 GPPPPDYNAHADSPVVMVYGLDPVKINADRVFNIFCLYGNVERVKFMKSKPGAAMVEMGD 375
Query: 301 GFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGA------------DTHEYMNSNLNRF 348
+ + AV L +LFG++L V SK I G D H Y N NRF
Sbjct: 376 CYAVDRAVSHLNNTMLFGQKLNVCVSKQQAIMPGQSYQLEDGSCSFKDFHGYRN---NRF 432
Query: 349 --NRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLF--EMNGKK 402
+ AAKN P+ ++H D + E EE G S V+ KLF +++
Sbjct: 433 TTSEQAAKNRIQ--QPSNVLHFFNSQPDSSVEAFSEICEELGIKSPVSVKLFTGKVDRSS 490
Query: 403 QALVLFETEEQATEAL 418
L+ +E+ A EAL
Sbjct: 491 SGLLEWESVNDAMEAL 506
>DICTYBASE|DDB_G0278105 [details] [associations]
symbol:DDB_G0278105 "heterogeneous nuclear
ribonucleoprotein L-like protein" species:44689 "Dictyostelium
discoideum" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0278105
GO:GO:0005634 GO:GO:0000166 EMBL:AAFI02000023 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG326285 KO:K13159
TIGRFAMs:TIGR01649 RefSeq:XP_642125.1 ProteinModelPortal:Q54YS7
EnsemblProtists:DDB0233648 GeneID:8621334 KEGG:ddi:DDB_G0278105
InParanoid:Q54YS7 OMA:VIRIVIF ProtClustDB:CLSZ2846835
Uniprot:Q54YS7
Length = 530
Score = 304 (112.1 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 61/207 (29%), Positives = 113/207 (54%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
EPS VIH R + + +++ D+ L PFG + + ++R QAL++M + ++ + +
Sbjct: 40 EPSPVIHCRGLPYSVTDADIHALLSPFGKVEAVCLMRM-GQALIEMDSIQTSTSIISLSI 98
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
+ + + +S Q L ++N I+L TI + +YPIT +H + S
Sbjct: 99 TKPFILHNQKILFAYSKSQHLNNSKKNQPIAQTGSQNIILCTILNPIYPITTNTIHNIMS 158
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQV 182
P+G V +IV FQK +G Q +++ SA A+ SL G++IY+G C+L I+F+ + +L V
Sbjct: 159 PYGRVIRIVIFQKKSGLQTFVEFDSPYSAWAAKESLNGQDIYNGGCKLQIEFARVSKLNV 218
Query: 183 NYNNERSRDFTNPNLPAEQKGRPSQSG 209
N++++ D+T +Q+ + + G
Sbjct: 219 KQNDDKTADYTAEFYQMQQQQQMASLG 245
Score = 286 (105.7 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 70/198 (35%), Positives = 113/198 (57%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 315
+LV+ L + +D DKLFNLF LYGN+I+IK+L N A+VQMGD QAE+A+ L +
Sbjct: 324 ILVNRL-PETLDTDKLFNLFCLYGNVIKIKMLHNTKGSAMVQMGDSVQAEIAIQCLNQSS 382
Query: 316 LFGKRLEVNFSKHPNITQGADTHEYMNSNLNRF--NRNAAKNYRYCCSPTKMIHLSTLPQ 373
++G+++ V +K+ I + T +Y S LNRF N+ KN Y SPT +H +P
Sbjct: 383 VYGQKIGVFHTKYQYIVESEKTRDYSKSTLNRFLNNQPYGKN-AYKPSPT--LHFLNVPL 439
Query: 374 DVTEEEIVSHLEEHGSIVNT--KLFEM---NGKKQALVLFETEEQATEALVCKHASSLGG 428
+ TE++++ G+ T K F + K L+ F ATEAL+ + + G
Sbjct: 440 NFTEKQLIDEFTNFGTHTPTHCKFFPTKPESTKLMGLLEFPDSRLATEALMDLNNHKITG 499
Query: 429 SIIRISFSQLQSIRENSQ 446
+++++SF+ + +I + Q
Sbjct: 500 NVLKLSFT-MNTIHKTEQ 516
>ZFIN|ZDB-GENE-030131-9796 [details] [associations]
symbol:ptbp1b "polypyrimidine tract binding
protein 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-9796
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:BC091854 IPI:IPI00613822
UniGene:Dr.75263 ProteinModelPortal:Q58EL3 STRING:Q58EL3
InParanoid:Q58EL3 ArrayExpress:Q58EL3 Bgee:Q58EL3 Uniprot:Q58EL3
Length = 586
Score = 357 (130.7 bits), Expect = 3.0e-50, Sum P(2) = 3.0e-50
Identities = 86/241 (35%), Positives = 134/241 (55%)
Query: 207 QSGYSEAGGMYAPGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDR 265
Q+G + G PGA A + P G P +TGT+ C +LVSNLN +R
Sbjct: 352 QAGLTIPG---VPGALASLTIPGAAAAAAAASRLGF---PTLTGTH--CVMLVSNLNPER 403
Query: 266 IDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 325
+ LF LF +YG+++R+K++ NK ++AL+QM DG QA+LA+ L G L+G+ L +
Sbjct: 404 VTPHCLFILFGVYGDVLRVKIMFNKKENALIQMSDGTQAQLAMSHLNGQKLYGRPLRITL 463
Query: 326 SKHPNITQGADTHE-------YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 378
SKH + + HE Y NS L+RF + +KNY P+ +HLS +P V E+
Sbjct: 464 SKHTTVQMPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSSTLHLSNIPPSVVED 523
Query: 379 EIVSHLEEHGSIV-NTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFS 436
++ G++V N K F+ + +K AL+ + E+A E+L+ H LG + +R+SFS
Sbjct: 524 DLKLLFGSSGALVKNFKFFQKD-RKMALIQMSSVEEAIESLIQFHNHDLGENHHLRVSFS 582
Query: 437 Q 437
+
Sbjct: 583 K 583
Score = 289 (106.8 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 62/162 (38%), Positives = 93/162 (57%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
P+ +L V + ++ YP+T++VLHQ+FS G V K++TF K+ FQAL+Q+ +A A+
Sbjct: 209 PSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFTDGLTAQHAKL 268
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGM 216
+L G+NIY+GCC L I FS L L V YNN++SRD+T P+LP +P+ ++ A
Sbjct: 269 ALDGQNIYNGCCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDS-QPALEHHAVAAAF 327
Query: 217 YAPGARAVA-FPQMXXXXXXXXXFGGGLP-PGITGTNDRCTV 256
APG + A + GL PG+ G T+
Sbjct: 328 AAPGIISAAPYASAHAFPPAFAIQQAGLTIPGVPGALASLTI 369
Score = 192 (72.6 bits), Expect = 3.0e-50, Sum P(2) = 3.0e-50
Identities = 35/82 (42%), Positives = 58/82 (70%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + ++I+E +++ L PFG +T L+ML+ KNQA L+M +A + +Y++
Sbjct: 91 PSRVIHVRKLPNDINEAEVIALGLPFGKVTNLLMLKGKNQAFLEMNSEEAAQTMVTYYSS 150
Query: 64 VQPTIRGRNVYVQFSSHQELTT 85
V P IR +++Q+S+H+EL T
Sbjct: 151 VTPVIRNHPIFMQYSNHKELKT 172
Score = 99 (39.9 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 240 GGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIR-IKLLRNKPDHALVQM 298
GG P G+TG + V+V NL + D L +FS +G +++ I +N AL+Q
Sbjct: 199 GGVDPSGMTGPSPVLRVIVENLFYP-VTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQF 257
Query: 299 GDGFQAELAVHFLKGALLFGK--RLEVNFSK 327
DG A+ A L G ++ L ++FSK
Sbjct: 258 TDGLTAQHAKLALDGQNIYNGCCTLRISFSK 288
Score = 78 (32.5 bits), Expect = 2.9e-38, Sum P(2) = 2.9e-38
Identities = 29/98 (29%), Positives = 46/98 (46%)
Query: 1 MTEPSKVIHV--RNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAIN 56
MT PS V+ V N+ + ++ + L Q+F FG + K++ NQ ALLQ D +A +
Sbjct: 206 MTGPSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFTDGLTAQH 265
Query: 57 ALQFYTNVQPTIRGR-NVYVQFSSHQELTTMEQNAQGR 93
A + + Q G + + FS L N + R
Sbjct: 266 A-KLALDGQNIYNGCCTLRISFSKLTSLNVKYNNDKSR 302
Score = 65 (27.9 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP + + L VT + + + G+++ F N + QAL+ F A A +
Sbjct: 210 SPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFTDGLTAQHAKLA 269
Query: 421 KHASSL--GGSIIRISFSQLQSI 441
++ G +RISFS+L S+
Sbjct: 270 LDGQNIYNGCCTLRISFSKLTSL 292
Score = 62 (26.9 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 27/103 (26%), Positives = 41/103 (39%)
Query: 112 ITVEVLHQVFSPHGFVEKI-VTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQL 170
+T L +F +G V ++ + F K ALIQ A +A S L G+ +Y L
Sbjct: 404 VTPHCLFILFGVYGDVLRVKIMFNKKEN--ALIQMSDGTQAQLAMSHLNGQKLYGR--PL 459
Query: 171 DIQFSNLDELQVNYNNERSRDFTNP--NLPAEQKGRPSQSGYS 211
I S +Q+ + T N P + +P YS
Sbjct: 460 RITLSKHTTVQMPREGHEDQGLTKDYSNSPLHRFKKPGSKNYS 502
Score = 54 (24.1 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P+ VT + +G ++ K+ N K+ AL+ QA A+ + L G +
Sbjct: 401 PERVTPHCLFILFGVYGDVLRVKIM-FNKKENALIQMSDGTQAQLAMSHLNGQKLYGRPL 459
Query: 432 RISFSQLQSIR 442
RI+ S+ +++
Sbjct: 460 RITLSKHTTVQ 470
>ZFIN|ZDB-GENE-040426-2707 [details] [associations]
symbol:hnrnpl2 "heterogeneous nuclear
ribonucleoprotein L2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2707 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG326285
HOVERGEN:HBG105786 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOGENOM:HOG000293298 EMBL:BX088654 EMBL:BC154328 IPI:IPI00617335
UniGene:Dr.32199 SMR:A8KC22 STRING:A8KC22
Ensembl:ENSDART00000142334 Uniprot:A8KC22
Length = 522
Score = 322 (118.4 bits), Expect = 8.0e-49, Sum P(2) = 8.0e-49
Identities = 69/196 (35%), Positives = 121/196 (61%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T PS V+HVR + + E+D+++ Q FG I+ +V++ K QAL++ +D+ + NA+ +
Sbjct: 38 TLPSLVVHVRGLVDGVLESDIVEALQEFGTISYVVLMPKKRQALVEYEDMNGSCNAVTYA 97
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ R N +LL+TI + +YPIT +VL+ +
Sbjct: 98 NDNQIYIAGHPAFVNYSTSQKISRPGDPDDARS--VNNVLLLTIMNPIYPITSDVLYTIC 155
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+ G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 156 NNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 214
Query: 182 VNYNNERSRDFTNPNL 197
V N++ + D+TNP+L
Sbjct: 215 VFKNDQDTWDYTNPSL 230
Score = 212 (79.7 bits), Expect = 8.0e-49, Sum P(2) = 8.0e-49
Identities = 75/264 (28%), Positives = 114/264 (43%)
Query: 179 ELQVNYNNERSRDFTNPNLPAEQKGRPS--QSGYSEAGGMYAPGARAVAFPQMXXXXXXX 236
++ N N + + + P E G P Y G P A P+
Sbjct: 234 DMNANPNKRQRQPALLGDHPPEYGGYPGYPDESYGYEGRRMGPPMSA---PRRGGASQRY 290
Query: 237 XXFGGGLPP---GITGTN-DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPD 292
GG PP G G + D ++V L+ +I+ D++FN+F LYGN+ R+K +++KP
Sbjct: 291 SAQYGGPPPPPPGEYGAHADSPVIMVYGLDPVKINADRVFNIFCLYGNVERVKFMKSKPG 350
Query: 293 HALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD------TH---EYMNS 343
A+V+MGD + + A+ L LF ++L + SK I G T+ +Y S
Sbjct: 351 AAMVEMGDCYAVDRAISHLNNNFLFNQKLNLCVSKQQAIMPGQSYELDDGTNSFKDYHGS 410
Query: 344 NLNRFN--RNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMN 399
NRF AAKN P+ ++H + T E EEHG + N K+F
Sbjct: 411 RNNRFATPEQAAKNRIQ--HPSNVLHFFNAVPEATPEMFTRLCEEHGVKNPSNIKIFVAK 468
Query: 400 GKK-----QALVLFETEEQATEAL 418
G L+ +E+ A EAL
Sbjct: 469 GNSPDRSSSGLLEWESVNDAMEAL 492
>UNIPROTKB|E1BIB4 [details] [associations]
symbol:HNRNPL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045120 "pronucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0044212 GO:GO:0045120 KO:K13159 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 CTD:3191 OMA:RPTSVKV EMBL:DAAA02047038
IPI:IPI00697891 RefSeq:NP_001178959.1 UniGene:Bt.21801 PRIDE:E1BIB4
Ensembl:ENSBTAT00000032051 GeneID:504520 KEGG:bta:504520
NextBio:20866705 Uniprot:E1BIB4
Length = 588
Score = 327 (120.2 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 73/207 (35%), Positives = 123/207 (59%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 97 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 156
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 157 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS--VNSVLLFTILNPIYSITTDVLYTIC 214
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 215 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 273
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQS 208
V N++ + D+TNPNL + G P +
Sbjct: 274 VFKNDQDTWDYTNPNLSGQ--GDPGSN 298
Score = 210 (79.0 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 57/191 (29%), Positives = 97/191 (50%)
Query: 244 PPGITGTN-DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 302
PP G + D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+
Sbjct: 370 PPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGY 429
Query: 303 QAELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RN 351
+ A+ L +FG++L V SK P I G ++ S NRF+
Sbjct: 430 AVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQ 489
Query: 352 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVL 407
AAKN P+ ++H P +VTEE +E G + + +GK + L+
Sbjct: 490 AAKNRIQ--HPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLE 547
Query: 408 FETEEQATEAL 418
+E++ A E L
Sbjct: 548 WESKSDALETL 558
>UNIPROTKB|E2R944 [details] [associations]
symbol:HNRNPL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045120 "pronucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0044212
GO:GO:0045120 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:RPTSVKV EMBL:AAEX03000969 Ensembl:ENSCAFT00000009103
Uniprot:E2R944
Length = 588
Score = 327 (120.2 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 73/207 (35%), Positives = 123/207 (59%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 97 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 156
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 157 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS--VNSVLLFTILNPIYSITTDVLYTIC 214
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 215 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 273
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQS 208
V N++ + D+TNPNL + G P +
Sbjct: 274 VFKNDQDTWDYTNPNLSGQ--GDPGSN 298
Score = 210 (79.0 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 57/191 (29%), Positives = 97/191 (50%)
Query: 244 PPGITGTN-DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 302
PP G + D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+
Sbjct: 370 PPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGY 429
Query: 303 QAELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RN 351
+ A+ L +FG++L V SK P I G ++ S NRF+
Sbjct: 430 AVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQ 489
Query: 352 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVL 407
AAKN P+ ++H P +VTEE +E G + + +GK + L+
Sbjct: 490 AAKNRIQ--HPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLE 547
Query: 408 FETEEQATEAL 418
+E++ A E L
Sbjct: 548 WESKSDALETL 558
>UNIPROTKB|P14866 [details] [associations]
symbol:HNRNPL "Heterogeneous nuclear ribonucleoprotein L"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 EMBL:CH471126 GO:GO:0003723 GO:GO:0044212
GO:GO:0030529 GO:GO:0000398 GO:GO:0045120 eggNOG:NOG326285
HOVERGEN:HBG105786 KO:K13159 TIGRFAMs:TIGR01649
HOGENOM:HOG000293298 EMBL:AB044547 EMBL:AK292115 EMBL:AC008982
EMBL:X16135 IPI:IPI00027834 PIR:A33616 RefSeq:NP_001005335.1
RefSeq:NP_001524.2 UniGene:Hs.644906 PDB:3R27 PDB:3TO8 PDBsum:3R27
PDBsum:3TO8 ProteinModelPortal:P14866 SMR:P14866 IntAct:P14866
MINT:MINT-1422378 STRING:P14866 PhosphoSite:P14866 DMDM:215274006
REPRODUCTION-2DPAGE:IPI00027834 SWISS-2DPAGE:P14866 PaxDb:P14866
PRIDE:P14866 DNASU:3191 Ensembl:ENST00000221419
Ensembl:ENST00000388749 Ensembl:ENST00000388750 GeneID:3191
KEGG:hsa:3191 UCSC:uc021uuh.1 CTD:3191 GeneCards:GC19M039327
H-InvDB:HIX0174642 HGNC:HGNC:5045 HPA:CAB016326 MIM:164021
MIM:603083 neXtProt:NX_P14866 PharmGKB:PA162391389
InParanoid:P14866 OMA:RPTSVKV OrthoDB:EOG4RFKSD ChiTaRS:HNRNPL
GenomeRNAi:3191 NextBio:12694 ArrayExpress:P14866 Bgee:P14866
CleanEx:HS_HNRNPL Genevestigator:P14866 GermOnline:ENSG00000104824
Uniprot:P14866
Length = 589
Score = 327 (120.2 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 73/207 (35%), Positives = 123/207 (59%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 98 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 157
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 158 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS--VNSVLLFTILNPIYSITTDVLYTIC 215
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 216 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 274
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQS 208
V N++ + D+TNPNL + G P +
Sbjct: 275 VFKNDQDTWDYTNPNLSGQ--GDPGSN 299
Score = 210 (79.0 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 57/191 (29%), Positives = 97/191 (50%)
Query: 244 PPGITGTN-DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF 302
PP G + D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+
Sbjct: 371 PPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGY 430
Query: 303 QAELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RN 351
+ A+ L +FG++L V SK P I G ++ S NRF+
Sbjct: 431 AVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQ 490
Query: 352 AAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVL 407
AAKN P+ ++H P +VTEE +E G + + +GK + L+
Sbjct: 491 AAKNRIQ--HPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLE 548
Query: 408 FETEEQATEAL 418
+E++ A E L
Sbjct: 549 WESKSDALETL 559
>MGI|MGI:104816 [details] [associations]
symbol:Hnrnpl "heterogeneous nuclear ribonucleoprotein L"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0044212 "transcription regulatory region
DNA binding" evidence=ISO] [GO:0045120 "pronucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104816 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0044212 GO:GO:0030529 GO:GO:0045120
eggNOG:NOG326285 HOVERGEN:HBG105786 KO:K13159 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOGENOM:HOG000293298 CTD:3191
OrthoDB:EOG4RFKSD ChiTaRS:HNRNPL EMBL:BC027206 EMBL:BC030461
EMBL:BC099683 EMBL:AB009392 IPI:IPI00620362 RefSeq:NP_796275.3
UniGene:Mm.9043 PDB:3S01 PDB:3TYT PDBsum:3S01 PDBsum:3TYT
ProteinModelPortal:Q8R081 SMR:Q8R081 IntAct:Q8R081 STRING:Q8R081
PhosphoSite:Q8R081 REPRODUCTION-2DPAGE:Q8R081 PaxDb:Q8R081
PRIDE:Q8R081 Ensembl:ENSMUST00000038572 Ensembl:ENSMUST00000174548
GeneID:15388 KEGG:mmu:15388 UCSC:uc009fzz.2 NextBio:288066
Bgee:Q8R081 CleanEx:MM_HNRNPL Genevestigator:Q8R081
GermOnline:ENSMUSG00000015165 Uniprot:Q8R081
Length = 586
Score = 327 (120.2 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 73/207 (35%), Positives = 123/207 (59%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 95 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 154
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 155 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS--VNSVLLFTILNPIYSITTDVLYTIC 212
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 213 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 271
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQS 208
V N++ + D+TNPNL + G P +
Sbjct: 272 VFKNDQDTWDYTNPNLSGQ--GDPGSN 296
Score = 209 (78.6 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 55/190 (28%), Positives = 95/190 (50%)
Query: 244 PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 303
PP D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+
Sbjct: 369 PPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA 428
Query: 304 AELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNA 352
+ A+ L +FG+++ V SK P I G ++ S NRF+ A
Sbjct: 429 VDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQA 488
Query: 353 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLF 408
AKN P+ ++H P +VTEE +E G T + +GK + L+ +
Sbjct: 489 AKNRIQ--HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEW 546
Query: 409 ETEEQATEAL 418
+++ A E L
Sbjct: 547 DSKSDALETL 556
>UNIPROTKB|F2Z3R2 [details] [associations]
symbol:Hnrnpl "Protein Hnrnpl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:71059 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13159
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:3191
UniGene:Rn.33873 GeneID:80846 KEGG:rno:80846 NextBio:614884
IPI:IPI00364061 RefSeq:NP_116008.2 ProteinModelPortal:F2Z3R2
SMR:F2Z3R2 PRIDE:F2Z3R2 Ensembl:ENSRNOT00000027494 Uniprot:F2Z3R2
Length = 586
Score = 327 (120.2 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 73/207 (35%), Positives = 123/207 (59%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 95 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 154
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 155 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS--VNSVLLFTILNPIYSITTDVLYTIC 212
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 213 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 271
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQS 208
V N++ + D+TNPNL + G P +
Sbjct: 272 VFKNDQDTWDYTNPNLSGQ--GDPGSN 296
Score = 209 (78.6 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 55/190 (28%), Positives = 95/190 (50%)
Query: 244 PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 303
PP D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+
Sbjct: 369 PPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA 428
Query: 304 AELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNA 352
+ A+ L +FG+++ V SK P I G ++ S NRF+ A
Sbjct: 429 VDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQA 488
Query: 353 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLF 408
AKN P+ ++H P +VTEE +E G T + +GK + L+ +
Sbjct: 489 AKNRIQ--HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEW 546
Query: 409 ETEEQATEAL 418
+++ A E L
Sbjct: 547 DSKSDALETL 556
>UNIPROTKB|F1LPP9 [details] [associations]
symbol:Hnrnpl "Protein Hnrnpl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:71059 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13159
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:3191
IPI:IPI00765134 RefSeq:NP_001128232.1 UniGene:Rn.33873 PRIDE:F1LPP9
Ensembl:ENSRNOT00000057034 GeneID:80846 KEGG:rno:80846
NextBio:614884 ArrayExpress:F1LPP9 Uniprot:F1LPP9
Length = 623
Score = 327 (120.2 bits), Expect = 2.2e-48, Sum P(2) = 2.2e-48
Identities = 73/207 (35%), Positives = 123/207 (59%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 95 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 154
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 155 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS--VNSVLLFTILNPIYSITTDVLYTIC 212
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 213 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 271
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQS 208
V N++ + D+TNPNL + G P +
Sbjct: 272 VFKNDQDTWDYTNPNLSGQ--GDPGSN 296
Score = 209 (78.6 bits), Expect = 2.2e-48, Sum P(2) = 2.2e-48
Identities = 55/190 (28%), Positives = 95/190 (50%)
Query: 244 PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 303
PP D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+
Sbjct: 406 PPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA 465
Query: 304 AELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNA 352
+ A+ L +FG+++ V SK P I G ++ S NRF+ A
Sbjct: 466 VDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQA 525
Query: 353 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLF 408
AKN P+ ++H P +VTEE +E G T + +GK + L+ +
Sbjct: 526 AKNRIQ--HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEW 583
Query: 409 ETEEQATEAL 418
+++ A E L
Sbjct: 584 DSKSDALETL 593
>UNIPROTKB|F1LY02 [details] [associations]
symbol:F1LY02 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074508
IPI:IPI00778797 Ensembl:ENSRNOT00000036047 Uniprot:F1LY02
Length = 494
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 146/463 (31%), Positives = 230/463 (49%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHV + +++E +++ L FG T L+ML+ KNQA ++M V +A + +YT+
Sbjct: 51 PSRVIHVLKLHSDVTEGEIISLGLSFGKATNLLMLKRKNQAFIEMSTVEAANTMVSYYTS 110
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD---EP----------------------- 97
V P +RG+ +Y+QFS H+EL T Q +P
Sbjct: 111 VVPVLRGQPIYIQFSDHKELKTDNSPNQAHAQTALQPVNTVQSGVALATSVAAVAAGMAM 170
Query: 98 ---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+ +L + + ++ YP+T++VLH++FS G V KI+TF K+A L+Q SA A
Sbjct: 171 AGQSPVLRIIVGNLFYPVTLDVLHKIFSKFGRVLKIITFTKNA----LLQSADPVSAQHA 226
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-QSGYSEA 213
+ S G+NI + C L I FS L L V YNN++SR +T P++ PS + A
Sbjct: 227 KLS-DGQNICNARCMLCINFSKLTRLNVQYNNDKSRGYTIPDVG---DSHPSLDQTMAAA 282
Query: 214 GGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFN 273
G+ P V P + +P VLVSNLN +R+ LF
Sbjct: 283 FGLSVPNVHGV-LP-LAIYSAAAAAGRIAIP-----------VLVSNLNLERVTTQSLFI 329
Query: 274 LFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT- 332
L +YG++ ++K+L NK ++ALVQ DG QA+LA+ L L G + + SKH ++
Sbjct: 330 LLGVYGDMQQVKILFNK-ENALVQSTDGSQAQLAISHLNRHKLHGTSVHITPSKHNSVQL 388
Query: 333 --QGA----DTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEE 386
+G T +Y +S L+ F + +KN+ P+ +HLS +P V+E++ S
Sbjct: 389 PHEGQKDQRQTKDYSSSPLHHFKKPGSKNFWNIFPPSATLHLSNIPPSVSEDDFKSLFSS 448
Query: 387 HGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 429
+G +V F K L+ E+A AL+ + L G+
Sbjct: 449 NGGMVKGFKFFKKDHKMILIQMGPVEEAVPALIELYNHDLEGN 491
>UNIPROTKB|F1P0T4 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0033120
"positive regulation of RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0033120
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 OMA:QIRIPNG
EMBL:AADN02041246 EMBL:AADN02041247 EMBL:AADN02041248
IPI:IPI00579162 Ensembl:ENSGALT00000013852 Uniprot:F1P0T4
Length = 473
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 149/460 (32%), Positives = 232/460 (50%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ + V SA + F +
Sbjct: 6 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEKVESAKKCVTFAADE 65
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 66 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 120
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++YQ A A+++L G +IY GCC L I+++ L
Sbjct: 121 NPVGKVQRIVIFKRN-GIQAMVEYQSVFCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 179
Query: 182 VNYNNERSRDFTNPNLPAEQKGR-----------PSQ---SGYSEAGGM------YAPGA 221
V N+ S D+T P L +G+ PS GY G + Y G+
Sbjct: 180 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 239
Query: 222 R----AVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277
R VA+P GG P G V+VS L+ +++ ++FNLF L
Sbjct: 240 RDTPELVAYP---LPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCL 289
Query: 278 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK-H---PN--- 330
YGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK H P+
Sbjct: 290 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIF 349
Query: 331 -ITQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 388
+ G ++ ++ S NRF + P+ ++H +P VTEE V E+H
Sbjct: 350 ELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFVKLCEDHE 409
Query: 389 --SIVNTKLFEMNGKKQAL--VL-FETEEQATEAL-VCKH 422
S + K+F+ + L +L +E + A EAL V H
Sbjct: 410 VLSFIKYKVFDPKPSAKTLSGLLEWECKTDAVEALTVLNH 449
>UNIPROTKB|B4DI28 [details] [associations]
symbol:PTBP2 "cDNA FLJ55578, highly similar to
Polypyrimidine tract-binding protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
HOGENOM:HOG000231699 EMBL:AL357150 IPI:IPI00647067
UniGene:Hs.269895 UniGene:Hs.596061 HGNC:HGNC:17662 ChiTaRS:PTBP2
EMBL:AK295384 SMR:B4DI28 STRING:B4DI28 Ensembl:ENST00000541987
Uniprot:B4DI28
Length = 325
Score = 307 (113.1 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 73/188 (38%), Positives = 108/188 (57%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+
Sbjct: 135 TTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALL 192
Query: 144 QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG 203
QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G
Sbjct: 193 QYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-G 251
Query: 204 RPS-----QSGYSEAGGMYA-PGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTV 256
+P+ + +++ + A PGA + +A P G+P G N +
Sbjct: 252 QPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNT--VL 309
Query: 257 LVSNLNSD 264
LVSNLN +
Sbjct: 310 LVSNLNEE 317
Score = 195 (73.7 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 35/91 (38%), Positives = 62/91 (68%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 26 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 85
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQ 91
V P +R + +Y+Q+S+H+EL T+ Q AQ
Sbjct: 86 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQ 116
Score = 75 (31.5 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELAVHFLKGA 314
+++ N+ + D L +FS +G +++I +N AL+Q GD A+ A L G
Sbjct: 152 IIIDNMYYP-VTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQ 210
Query: 315 LLFGK--RLEVNFSKHPNI 331
++ L ++FSK N+
Sbjct: 211 NIYNACCTLRIDFSKLVNL 229
Score = 54 (24.1 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 18/83 (21%), Positives = 38/83 (45%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + + VT + + + G+++ F N + QAL+ + A +A +
Sbjct: 147 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLA 206
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ + +RI FS+L ++
Sbjct: 207 LDGQNIYNACCTLRIDFSKLVNL 229
>MGI|MGI:1919942 [details] [associations]
symbol:Hnrpll "heterogeneous nuclear ribonucleoprotein
L-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1919942 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0033120
CTD:92906 eggNOG:NOG326285 HOVERGEN:HBG105786 KO:K13159
OrthoDB:EOG49S662 TIGRFAMs:TIGR01649 EMBL:AK034860 EMBL:AK146879
EMBL:BC004763 EMBL:BC012849 EMBL:BC071184 IPI:IPI00121760
IPI:IPI00463538 IPI:IPI00555009 RefSeq:NP_659051.3 UniGene:Mm.64579
PDB:1WEX PDB:2E5I PDBsum:1WEX PDBsum:2E5I ProteinModelPortal:Q921F4
SMR:Q921F4 STRING:Q921F4 PhosphoSite:Q921F4 PaxDb:Q921F4
PRIDE:Q921F4 Ensembl:ENSMUST00000061331 GeneID:72692 KEGG:mmu:72692
UCSC:uc008dqk.1 GeneTree:ENSGT00550000074508 HOGENOM:HOG000293298
InParanoid:Q921F4 OMA:QIRIPNG EvolutionaryTrace:Q921F4
NextBio:336749 Bgee:Q921F4 CleanEx:MM_HNRPLL Genevestigator:Q921F4
GermOnline:ENSMUSG00000024095 Uniprot:Q921F4
Length = 591
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 142/455 (31%), Positives = 228/455 (50%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 183
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 184 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 238
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 239 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 297
Query: 182 VNYNNERSRDFTNPNLPAEQKGR-----------PSQ---SGYSEAGGM------YAPGA 221
V N+ S D+T P L +G+ PS GY G + Y G+
Sbjct: 298 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGS 357
Query: 222 R----AVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277
R VA+P GG P G V+VS L+ +++ ++FNLF L
Sbjct: 358 RDTPELVAYP---LPQASSSYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFNLFCL 407
Query: 278 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK-H---PN--- 330
YGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK H P+
Sbjct: 408 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIF 467
Query: 331 -ITQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 388
+ G ++ ++ S NRF + P+ ++H +P VTEE +H
Sbjct: 468 ELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHE 527
Query: 389 SI--VNTKLFEMNGKKQALV-LFE--TEEQATEAL 418
+ + K+F+ + L L E + A EAL
Sbjct: 528 VLPFIKYKVFDAKASAKTLSGLLEWKCKTDAVEAL 562
>RGD|1305861 [details] [associations]
symbol:Hnrpll "heterogeneous nuclear ribonucleoprotein L-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1305861
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0033120 CTD:92906 KO:K13159
OrthoDB:EOG49S662 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
IPI:IPI00360055 RefSeq:XP_001063027.2 RefSeq:XP_233805.5
PRIDE:D4A3E1 Ensembl:ENSRNOT00000009175 GeneID:313842
KEGG:rno:313842 UCSC:RGD:1305861 NextBio:666896 Uniprot:D4A3E1
Length = 591
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 142/455 (31%), Positives = 228/455 (50%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 183
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 184 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 238
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 239 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 297
Query: 182 VNYNNERSRDFTNPNLPAEQKGR-----------PSQ---SGYSEAGGM------YAPGA 221
V N+ S D+T P L +G+ PS GY G + Y G+
Sbjct: 298 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGS 357
Query: 222 R----AVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277
R VA+P GG P G V+VS L+ +++ ++FNLF L
Sbjct: 358 RDTPELVAYP---LPQASSSYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFNLFCL 407
Query: 278 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK-H---PN--- 330
YGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK H P+
Sbjct: 408 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIF 467
Query: 331 -ITQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 388
+ G ++ ++ S NRF + P+ ++H +P VTEE +H
Sbjct: 468 ELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHE 527
Query: 389 SI--VNTKLFEMNGKKQALV-LFE--TEEQATEAL 418
+ + K+F+ + L L E + A EAL
Sbjct: 528 VLPFIKYKVFDAKASAKTLSGLLEWKCKTDAVEAL 562
>UNIPROTKB|Q8WVV9 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0033120 "positive
regulation of RNA splicing" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0033120 EMBL:AY236963 EMBL:AF461722 EMBL:AF461712
EMBL:AF461713 EMBL:AF461715 EMBL:AF461717 EMBL:AF461719
EMBL:AF461721 EMBL:AF461720 EMBL:AF461718 EMBL:AF461716
EMBL:AF461714 EMBL:AK291462 EMBL:AC011247 EMBL:BC008217
EMBL:BC017480 EMBL:AL512692 IPI:IPI00103247 IPI:IPI00470410
IPI:IPI00479814 IPI:IPI00554613 RefSeq:NP_001136122.1
RefSeq:NP_612403.2 UniGene:Hs.445497 ProteinModelPortal:Q8WVV9
SMR:Q8WVV9 IntAct:Q8WVV9 MINT:MINT-1033123 STRING:Q8WVV9
PhosphoSite:Q8WVV9 DMDM:62286941 PaxDb:Q8WVV9 PRIDE:Q8WVV9
Ensembl:ENST00000409636 Ensembl:ENST00000410076 GeneID:92906
KEGG:hsa:92906 UCSC:uc021vgb.1 UCSC:uc021vgc.1 CTD:92906
GeneCards:GC02M038789 HGNC:HGNC:25127 HPA:HPA046084 MIM:611208
neXtProt:NX_Q8WVV9 PharmGKB:PA134987080 eggNOG:NOG326285
HOVERGEN:HBG105786 InParanoid:Q8WVV9 KO:K13159 OrthoDB:EOG49S662
GenomeRNAi:92906 NextBio:77908 ArrayExpress:Q8WVV9 Bgee:Q8WVV9
CleanEx:HS_HNRPLL Genevestigator:Q8WVV9 GermOnline:ENSG00000143889
TIGRFAMs:TIGR01649 Uniprot:Q8WVV9
Length = 542
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 141/455 (30%), Positives = 229/455 (50%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNLPAEQKGR-----------PSQ---SGYSEAGGM------YAPGA 221
V N+ S D+T P L +G+ PS GY G + Y G+
Sbjct: 249 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 308
Query: 222 R----AVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277
R VA+P GG P G V+VS L+ +++ ++FNLF L
Sbjct: 309 RDTPELVAYP---LPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCL 358
Query: 278 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK-H---PN--- 330
YGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK H P+
Sbjct: 359 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIF 418
Query: 331 -ITQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 388
+ G ++ ++ S NRF + P+ ++H +P VTEE +H
Sbjct: 419 ELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHE 478
Query: 389 --SIVNTKLFEMNGKKQAL--VL-FETEEQATEAL 418
+ + K+F+ + L +L +E + A EAL
Sbjct: 479 VLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 513
>UNIPROTKB|F1LQ48 [details] [associations]
symbol:Hnrnpl "Protein Hnrnpl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:71059 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:RPTSVKV IPI:IPI00201964
Ensembl:ENSRNOT00000027425 ArrayExpress:F1LQ48 Uniprot:F1LQ48
Length = 595
Score = 312 (114.9 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 74/210 (35%), Positives = 122/210 (58%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 64 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 123
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 124 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS--VNSVLLFTILNPIYSITTDVLYTIC 181
Query: 122 SPHGFVEKIVTFQKSAGFQALI---QYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLD 178
+P G V++IV F+K+ G QA+I + SA A++SL G +IY GCC L I+++
Sbjct: 182 NPCGPVQRIVIFRKN-GVQAMIVPPTFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPT 240
Query: 179 ELQVNYNNERSRDFTNPNLPAEQKGRPSQS 208
L V N++ + D+TNPNL + G P +
Sbjct: 241 RLNVFKNDQDTWDYTNPNLSGQ--GDPGSN 268
Score = 209 (78.6 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 55/190 (28%), Positives = 95/190 (50%)
Query: 244 PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 303
PP D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+
Sbjct: 378 PPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA 437
Query: 304 AELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNA 352
+ A+ L +FG+++ V SK P I G ++ S NRF+ A
Sbjct: 438 VDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQA 497
Query: 353 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLF 408
AKN P+ ++H P +VTEE +E G T + +GK + L+ +
Sbjct: 498 AKNRIQ--HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEW 555
Query: 409 ETEEQATEAL 418
+++ A E L
Sbjct: 556 DSKSDALETL 565
>UNIPROTKB|F1N7G0 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0033120 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QIRIPNG EMBL:DAAA02030598
IPI:IPI00709568 Ensembl:ENSBTAT00000027405 Uniprot:F1N7G0
Length = 541
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 141/455 (30%), Positives = 228/455 (50%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 74 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 133
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 134 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 188
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 189 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 247
Query: 182 VNYNNERSRDFTNPNLPAEQKGR-----------PSQ---SGYSEAGGM------YAPGA 221
V N+ S D+T P L +G+ PS GY G + Y G+
Sbjct: 248 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 307
Query: 222 R----AVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277
R VA+P GG P G V+VS L+ +++ ++FNLF L
Sbjct: 308 RDTPELVAYP---LPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCL 357
Query: 278 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK-H---PN--- 330
YGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK H P+
Sbjct: 358 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIF 417
Query: 331 -ITQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 388
+ G ++ ++ S NRF + P+ ++H +P VTEE +H
Sbjct: 418 ELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHE 477
Query: 389 --SIVNTKLFEMNGKKQAL--VL-FETEEQATEAL 418
+ + K+F+ + L +L +E + A EAL
Sbjct: 478 VLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 512
>UNIPROTKB|J9P3Y8 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QIRIPNG EMBL:AAEX03010867
Ensembl:ENSCAFT00000049490 Uniprot:J9P3Y8
Length = 545
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 141/455 (30%), Positives = 228/455 (50%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 78 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 137
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 138 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 192
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 193 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 251
Query: 182 VNYNNERSRDFTNPNLPAEQKGR-----------PSQ---SGYSEAGGM------YAPGA 221
V N+ S D+T P L +G+ PS GY G + Y G+
Sbjct: 252 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 311
Query: 222 R----AVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277
R VA+P GG P G V+VS L+ +++ ++FNLF L
Sbjct: 312 RDTPELVAYP---LPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCL 361
Query: 278 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK-H---PN--- 330
YGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK H P+
Sbjct: 362 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIF 421
Query: 331 -ITQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 388
+ G ++ ++ S NRF + P+ ++H +P VTEE +H
Sbjct: 422 ELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHE 481
Query: 389 --SIVNTKLFEMNGKKQAL--VL-FETEEQATEAL 418
+ + K+F+ + L +L +E + A EAL
Sbjct: 482 VLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 516
>UNIPROTKB|D6W592 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CH471053
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 EMBL:AC011247 IPI:IPI00103247 UniGene:Hs.445497
HGNC:HGNC:25127 TIGRFAMs:TIGR01649 OMA:QIRIPNG
ProteinModelPortal:D6W592 SMR:D6W592 PRIDE:D6W592
Ensembl:ENST00000449105 PhylomeDB:D6W592 ArrayExpress:D6W592
Bgee:D6W592 Uniprot:D6W592
Length = 542
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 141/455 (30%), Positives = 228/455 (50%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNLPAEQKGR-----------PSQ---SGYSEAGGM------YAPGA 221
V N+ S D+T P L +G+ PS GY G + Y G+
Sbjct: 249 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 308
Query: 222 R----AVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277
R VA+P GG P G V+VS L+ +++ ++FNLF L
Sbjct: 309 RDTPELVAYP---LPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCL 358
Query: 278 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK-H---PN--- 330
YGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK H P+
Sbjct: 359 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIF 418
Query: 331 -ITQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 388
+ G ++ ++ S NRF + P+ ++H +P VTEE +H
Sbjct: 419 ELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHE 478
Query: 389 --SIVNTKLFEMNGKKQAL--VL-FETEEQATEAL 418
+ + K+F+ + L +L +E + A EAL
Sbjct: 479 VLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 513
>UNIPROTKB|F1MPG6 [details] [associations]
symbol:F1MPG6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0033119 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:PPSVTMD EMBL:DAAA02024547 IPI:IPI00700660
Ensembl:ENSBTAT00000022272 Uniprot:F1MPG6
Length = 523
Score = 315 (115.9 bits), Expect = 8.6e-44, Sum P(2) = 8.6e-44
Identities = 83/243 (34%), Positives = 126/243 (51%)
Query: 203 GRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLN 262
G P +G S G+ PGA P G PG G +LV+NLN
Sbjct: 285 GFPQATGLSVPAGL-GPGALG---PLAITSSAVT---GRMAIPGAGGMPGNSVLLVTNLN 337
Query: 263 SDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLE 322
D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK L
Sbjct: 338 PDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLR 397
Query: 323 VNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDV 375
SKH + +G + T ++ NS L+RF + +KN++ P+ +HLS +P V
Sbjct: 398 ATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV 457
Query: 376 TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRIS 434
T +++ + E G V F +K AL+ + E+A +AL+ H LG + +R+S
Sbjct: 458 TVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVS 517
Query: 435 FSQ 437
FS+
Sbjct: 518 FSK 520
Score = 288 (106.4 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 67/162 (41%), Positives = 91/162 (56%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 146 GQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHY 203
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QS 208
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 204 AKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAA 262
Query: 209 GYSEAGGMYAPGARAVAF-PQMXXXXXXXXXFGGGLPPGITG 249
+ G + +P A A F P + GL PG G
Sbjct: 263 AFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAGLGPGALG 304
Score = 191 (72.3 bits), Expect = 8.6e-44, Sum P(2) = 8.6e-44
Identities = 34/93 (36%), Positives = 61/93 (65%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
+ PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +
Sbjct: 23 LCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNY 82
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
YT V P +R + V++Q+S+H+EL T Q R
Sbjct: 83 YTPVTPHLRSQPVFIQYSNHRELKTDNLPNQAR 115
Score = 69 (29.3 bits), Expect = 5.5e-31, Sum P(2) = 5.5e-31
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I + N+ + ++ L Q+F FG + K++ NQ ALLQ D P +NA Y +
Sbjct: 153 IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYAD-P--LNA--HYAKM- 206
Query: 66 PTIRGRNVY 74
+ G+N+Y
Sbjct: 207 -ALDGQNIY 214
Score = 57 (25.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + L VT E + + G+++ F N + QAL+ + A A +
Sbjct: 148 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMA 207
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ + +RI FS+L S+
Sbjct: 208 LDGQNIYNACCTLRIDFSKLTSL 230
Score = 53 (23.7 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 387 HGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 442
+G + K+ N K+ ALV QA A+ L G ++R + S+ Q+++
Sbjct: 353 YGDVHRVKIM-FNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQ 407
Score = 43 (20.2 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 20/74 (27%), Positives = 31/74 (41%)
Query: 104 TIHHMLYP--ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
T+H P +TV+ L +F+ G K F + ALIQ A+ A L
Sbjct: 447 TLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 506
Query: 162 NIYDGCCQLDIQFS 175
++ + L + FS
Sbjct: 507 DLGENH-HLRVSFS 519
>UNIPROTKB|Q06A95 [details] [associations]
symbol:ROD1 "ROD1" species:9823 "Sus scrofa" [GO:0033119
"negative regulation of RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0033119 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 OrthoDB:EOG4GMTXQ OMA:PPSVTMD EMBL:CU234201
EMBL:DQ972969 RefSeq:NP_001070683.1 UniGene:Ssc.16910 SMR:Q06A95
Ensembl:ENSSSCT00000006012 GeneID:768100 KEGG:ssc:768100
CTD:100701891 Uniprot:Q06A95
Length = 523
Score = 315 (115.9 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 82/243 (33%), Positives = 126/243 (51%)
Query: 203 GRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLN 262
G P +G S G+ PGA P G PG G +LV+NLN
Sbjct: 285 GFPQATGLSVPAGL-GPGALG---PLAITSSAVT---GRMAMPGTGGIPGNSVLLVTNLN 337
Query: 263 SDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLE 322
D + LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK L
Sbjct: 338 PDLVTPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLR 397
Query: 323 VNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDV 375
SKH + +G + T ++ NS L+RF + +KN++ P+ +HLS +P V
Sbjct: 398 ATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV 457
Query: 376 TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRIS 434
T +++ + E G V F +K AL+ + E+A +AL+ H LG + +R+S
Sbjct: 458 TVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVS 517
Query: 435 FSQ 437
FS+
Sbjct: 518 FSK 520
Score = 288 (106.4 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 67/162 (41%), Positives = 91/162 (56%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A
Sbjct: 146 GQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHY 203
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QS 208
A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 204 AKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAA 262
Query: 209 GYSEAGGMYAPGARAVAF-PQMXXXXXXXXXFGGGLPPGITG 249
+ G + +P A A F P + GL PG G
Sbjct: 263 AFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAGLGPGALG 304
Score = 190 (71.9 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 34/90 (37%), Positives = 60/90 (66%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 26 PSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTP 85
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +R + V++Q+S+H+EL T Q R
Sbjct: 86 VTPHLRSQPVFIQYSNHRELKTDNLPNQAR 115
Score = 69 (29.3 bits), Expect = 5.5e-31, Sum P(2) = 5.5e-31
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I + N+ + ++ L Q+F FG + K++ NQ ALLQ D P +NA Y +
Sbjct: 153 IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYAD-P--LNA--HYAKM- 206
Query: 66 PTIRGRNVY 74
+ G+N+Y
Sbjct: 207 -ALDGQNIY 214
Score = 57 (25.1 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + L VT E + + G+++ F N + QAL+ + A A +
Sbjct: 148 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMA 207
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ + +RI FS+L S+
Sbjct: 208 LDGQNIYNACCTLRIDFSKLTSL 230
Score = 54 (24.1 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431
P VT + +G + K+ N K+ ALV QA A+ L G ++
Sbjct: 338 PDLVTPHGLFILFGVYGDVHRVKIM-FNKKENALVQMADANQAQLAMNHLSGQRLYGKVL 396
Query: 432 RISFSQLQSIR 442
R + S+ Q+++
Sbjct: 397 RATLSKHQAVQ 407
Score = 43 (20.2 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 20/74 (27%), Positives = 31/74 (41%)
Query: 104 TIHHMLYP--ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161
T+H P +TV+ L +F+ G K F + ALIQ A+ A L
Sbjct: 447 TLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 506
Query: 162 NIYDGCCQLDIQFS 175
++ + L + FS
Sbjct: 507 DLGENH-HLRVSFS 519
>GENEDB_PFALCIPARUM|PFF0320c [details] [associations]
symbol:PFF0320c "polypyrimidine tract binding
protein, putative" species:5833 "Plasmodium falciparum" [GO:0008187
"poly-pyrimidine tract binding" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL844505 GO:GO:0008187 RefSeq:XP_966055.1
ProteinModelPortal:C6KSR3 EnsemblProtists:PFF0320c:mRNA
GeneID:3885785 KEGG:pfa:PFF0320c EuPathDB:PlasmoDB:PF3D7_0606500
HOGENOM:HOG000281449 OMA:DATENEI ProtClustDB:CLSZ2432274
Uniprot:C6KSR3
Length = 663
Score = 418 (152.2 bits), Expect = 4.8e-43, Sum P(2) = 4.8e-43
Identities = 113/379 (29%), Positives = 205/379 (54%)
Query: 74 YVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF 133
+ ++H ++N++ E ++++LV++ ++ YP+ +E+++ +FS G VEKI+TF
Sbjct: 291 HTNHNNHPTDVLDKRNSKSNKAECSKVILVSVINLHYPVDIELIYYLFSKCGTVEKIITF 350
Query: 134 QKSAG-FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDF 192
++ +QAL+Q+ +A A +L RNIYDGC ++IQ+S L EL + NN S D+
Sbjct: 351 SRNPVLYQALVQFDNVETAKEAIKTLHNRNIYDGCNTINIQYSFLKELVIKGNNSSSWDY 410
Query: 193 TNPNLPAEQKGRPSQSGYSEAGGMYAPGARAV--AFPQMXXXXXXXXXFGGGLPPGITGT 250
T N E+K + + G + P ++V Q+ F P
Sbjct: 411 TISN---EKKTKNFPVLQNSHGVLPTPSRKSVDSELYQLMEKKFKLVDFEKMNP------ 461
Query: 251 NDRCTVLVS-NLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 309
+ VL+ N+ + D +KLFNLFS+YG + RIK+LR KPD AL+Q + + LA
Sbjct: 462 -SKTPVLICYNIPKEYTDVNKLFNLFSIYGFVTRIKILREKPDAALIQYSNYIFSSLAQE 520
Query: 310 FLKGALLFGKRLEVNFSK-HP-NITQGADTHEYMNSNL-NRFNR-----NAAKNYRYCCS 361
+L+ A + + +EVNFSK H ++Q +E N+ + + +++ + K + C
Sbjct: 521 YLQRARISNQSIEVNFSKIHDIRVSQRQQNNESHNTKIFSNYDQRYVLSDQGKYIKAACR 580
Query: 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-GKKQALVLFE--TEEQATEAL 418
PTK + +S L ++V E+ +++ ++G+I + + GK+ ++ E TE+ AT+AL
Sbjct: 581 PTKCLFISNLNENVNEDCVMNLFNKYGNINKLQFLPVKEGKRHLSIIVEMNTEDMATKAL 640
Query: 419 VCKHASSLGGSIIRISFSQ 437
+ H L I++S+++
Sbjct: 641 MDLHNFYLKDRYIKVSYTK 659
Score = 62 (26.9 bits), Expect = 4.8e-43, Sum P(2) = 4.8e-43
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQP 66
V+ ++NV ++ E D++ +PF ++ ++++ D I ++ Y N P
Sbjct: 179 VLLLKNVPEKVDEEDIISFMRPFLRNKNPEIIFDGQDIIVKLYD-DELIESIYTYFNEHP 237
Query: 67 T-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRIL 101
T I+G V V+ S H ++ N + +E N IL
Sbjct: 238 TQIKGSFVKVKLS-H----IIDDNKESM-EEQNDIL 267
>UNIPROTKB|C6KSR3 [details] [associations]
symbol:PFF0320c "Polypyrimidine tract binding protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0008187
"poly-pyrimidine tract binding" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL844505 GO:GO:0008187 RefSeq:XP_966055.1
ProteinModelPortal:C6KSR3 EnsemblProtists:PFF0320c:mRNA
GeneID:3885785 KEGG:pfa:PFF0320c EuPathDB:PlasmoDB:PF3D7_0606500
HOGENOM:HOG000281449 OMA:DATENEI ProtClustDB:CLSZ2432274
Uniprot:C6KSR3
Length = 663
Score = 418 (152.2 bits), Expect = 4.8e-43, Sum P(2) = 4.8e-43
Identities = 113/379 (29%), Positives = 205/379 (54%)
Query: 74 YVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF 133
+ ++H ++N++ E ++++LV++ ++ YP+ +E+++ +FS G VEKI+TF
Sbjct: 291 HTNHNNHPTDVLDKRNSKSNKAECSKVILVSVINLHYPVDIELIYYLFSKCGTVEKIITF 350
Query: 134 QKSAG-FQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDF 192
++ +QAL+Q+ +A A +L RNIYDGC ++IQ+S L EL + NN S D+
Sbjct: 351 SRNPVLYQALVQFDNVETAKEAIKTLHNRNIYDGCNTINIQYSFLKELVIKGNNSSSWDY 410
Query: 193 TNPNLPAEQKGRPSQSGYSEAGGMYAPGARAV--AFPQMXXXXXXXXXFGGGLPPGITGT 250
T N E+K + + G + P ++V Q+ F P
Sbjct: 411 TISN---EKKTKNFPVLQNSHGVLPTPSRKSVDSELYQLMEKKFKLVDFEKMNP------ 461
Query: 251 NDRCTVLVS-NLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVH 309
+ VL+ N+ + D +KLFNLFS+YG + RIK+LR KPD AL+Q + + LA
Sbjct: 462 -SKTPVLICYNIPKEYTDVNKLFNLFSIYGFVTRIKILREKPDAALIQYSNYIFSSLAQE 520
Query: 310 FLKGALLFGKRLEVNFSK-HP-NITQGADTHEYMNSNL-NRFNR-----NAAKNYRYCCS 361
+L+ A + + +EVNFSK H ++Q +E N+ + + +++ + K + C
Sbjct: 521 YLQRARISNQSIEVNFSKIHDIRVSQRQQNNESHNTKIFSNYDQRYVLSDQGKYIKAACR 580
Query: 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-GKKQALVLFE--TEEQATEAL 418
PTK + +S L ++V E+ +++ ++G+I + + GK+ ++ E TE+ AT+AL
Sbjct: 581 PTKCLFISNLNENVNEDCVMNLFNKYGNINKLQFLPVKEGKRHLSIIVEMNTEDMATKAL 640
Query: 419 VCKHASSLGGSIIRISFSQ 437
+ H L I++S+++
Sbjct: 641 MDLHNFYLKDRYIKVSYTK 659
Score = 62 (26.9 bits), Expect = 4.8e-43, Sum P(2) = 4.8e-43
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQP 66
V+ ++NV ++ E D++ +PF ++ ++++ D I ++ Y N P
Sbjct: 179 VLLLKNVPEKVDEEDIISFMRPFLRNKNPEIIFDGQDIIVKLYD-DELIESIYTYFNEHP 237
Query: 67 T-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRIL 101
T I+G V V+ S H ++ N + +E N IL
Sbjct: 238 TQIKGSFVKVKLS-H----IIDDNKESM-EEQNDIL 267
>UNIPROTKB|I3L8B8 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
Ensembl:ENSSSCT00000030162 Uniprot:I3L8B8
Length = 488
Score = 302 (111.4 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 69/200 (34%), Positives = 119/200 (59%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 6 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 65
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 66 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 120
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV----ARSSLQGRNIYDGCCQLDIQFSNL 177
+P G V++IV F+++ G QA+++Y L +V+ A+++L G +IY GCC L I+++
Sbjct: 121 NPVGKVQRIVIFKRN-GIQAMVEYPLFFKSVLCAQKAKAALNGADIYAGCCTLKIEYARP 179
Query: 178 DELQVNYNNERSRDFTNPNL 197
L V N+ S D+T P L
Sbjct: 180 TRLNVIRNDNDSWDYTKPYL 199
Score = 195 (73.7 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 58/184 (31%), Positives = 91/184 (49%)
Query: 249 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 308
G V+VS L+ +++ ++FNLF LYGNI ++K ++ P ALV+MGD + E AV
Sbjct: 276 GNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAV 335
Query: 309 HFLKGALLFGKRLEVNFSKH----PN----ITQGADTH-EYMNSNLNRFNRNAAKNYRYC 359
L LFGKRL V SK P+ + G ++ ++ S NRF +
Sbjct: 336 THLNNVKLFGKRLNVWCSKQLSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNII 395
Query: 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMNGKKQAL--VL-FETEEQA 414
P+ ++H +P VTEE +H + + K+F+ + L +L +E + A
Sbjct: 396 QPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDA 455
Query: 415 TEAL 418
EAL
Sbjct: 456 VEAL 459
>UNIPROTKB|A8YXY5 [details] [associations]
symbol:PTBP1 "PTBP1 protein" species:9913 "Bos taurus"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
UniGene:Bt.9031 HOVERGEN:HBG069548 EMBL:DAAA02020232 EMBL:BC103383
IPI:IPI00968681 SMR:A8YXY5 Ensembl:ENSBTAT00000066124
Uniprot:A8YXY5
Length = 446
Score = 281 (104.0 bits), Expect = 5.8e-41, Sum P(2) = 5.8e-41
Identities = 59/127 (46%), Positives = 81/127 (63%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 179 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 236
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS + A
Sbjct: 237 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLD-QTMA 294
Query: 214 GGMYAPG 220
APG
Sbjct: 295 AAFGAPG 301
Score = 209 (78.6 bits), Expect = 5.8e-41, Sum P(2) = 5.8e-41
Identities = 37/90 (41%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQAR 146
Score = 171 (65.3 bits), Expect = 8.8e-28, Sum P(2) = 8.8e-28
Identities = 39/110 (35%), Positives = 55/110 (50%)
Query: 198 PAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTV 256
P G P +A G+ P P G + PG+ G + +
Sbjct: 307 PYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNS-VL 365
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAEL 306
LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+L
Sbjct: 366 LVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQL 415
Score = 71 (30.1 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I V N+ + ++ + L Q+F FG + K++ NQ ALLQ D SA +A +
Sbjct: 186 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA-------K 238
Query: 66 PTIRGRNVY 74
++ G+N+Y
Sbjct: 239 LSLDGQNIY 247
Score = 70 (29.7 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 247 ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAE 305
+ G + ++V NL + D L +FS +G +++I +N AL+Q D A+
Sbjct: 177 MAGQSPVLRIIVENLFYP-VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQ 235
Query: 306 LAVHFLKGALLFGK--RLEVNFSK 327
A L G ++ L ++FSK
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSK 259
Score = 56 (24.8 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SP I + L VT + + + G+++ F N + QAL+ + A A +
Sbjct: 181 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
Query: 421 KHASSLGGSI--IRISFSQLQSI 441
++ + +RI FS+L S+
Sbjct: 241 LDGQNIYNACCTLRIDFSKLTSL 263
>TAIR|locus:2102142 [details] [associations]
symbol:PTB1 "polypyrimidine tract-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0009846 "pollen germination" evidence=IGI] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0006417
"regulation of translation" evidence=IEP] [GO:0043484 "regulation
of RNA splicing" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0009845 "seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0000932 GO:GO:0009846 EMBL:AC008261
EMBL:AF076924 IPI:IPI00548173 PIR:T51814 RefSeq:NP_186764.1
UniGene:At.18320 ProteinModelPortal:Q9MAC5 SMR:Q9MAC5 STRING:Q9MAC5
PaxDb:Q9MAC5 PRIDE:Q9MAC5 EnsemblPlants:AT3G01150.1 GeneID:821129
KEGG:ath:AT3G01150 GeneFarm:5074 TAIR:At3g01150 eggNOG:NOG307589
HOGENOM:HOG000238077 InParanoid:Q9MAC5 KO:K14948 OMA:ESHEVSI
PhylomeDB:Q9MAC5 ProtClustDB:CLSN2684978 Genevestigator:Q9MAC5
GermOnline:AT3G01150 Uniprot:Q9MAC5
Length = 399
Score = 370 (135.3 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 84/210 (40%), Positives = 129/210 (61%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E E +L+ L + FG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ E+ N Q GD P +LLVT + + ++++V+H
Sbjct: 75 ASSSEPAQIRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLLVTFEGVESHEVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A ARS+L GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQ 201
+ +S +L + + + RSRD+TNP LP Q
Sbjct: 191 MSYSAHTDLNIKFQSHRSRDYTNPYLPVNQ 220
Score = 240 (89.5 bits), Expect = 6.6e-18, P = 6.6e-18
Identities = 57/138 (41%), Positives = 85/138 (61%)
Query: 90 AQGRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLR 148
A G+ E + +LL I +M Y +TV+VLH VFS +G V+KI F+K+ QALIQY
Sbjct: 233 ADGKKVESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDI 292
Query: 149 PSAVVARSSLQGRNIYDG-CCQLDIQFSNLDELQVNYNNERSRDFTNPNLP--AEQKGRP 205
P+A +A+ +L+G IYDG C+L + +S +L V +++SRD+T P+L QKG P
Sbjct: 293 PTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKG-P 351
Query: 206 SQSGYSEAGGMYAPGARA 223
+ SG + G P A++
Sbjct: 352 AVSGSAPPAGWQNPQAQS 369
Score = 119 (46.9 bits), Expect = 0.00035, P = 0.00035
Identities = 32/94 (34%), Positives = 48/94 (51%)
Query: 356 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 415
+RY +P+K++HL LP + EEE++ + G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAI 68
Query: 416 EALVCKHASS-----LGGSIIRISFSQLQSIREN 444
++V +ASS + G + I +S I N
Sbjct: 69 -SMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNN 101
Score = 76 (31.8 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQMGDGFQAELAVHFLKGAL 315
L+ N+ + D L +FS YG + +I + +N AL+Q D A +A L+G
Sbjct: 248 LIENMQY-AVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHC 306
Query: 316 LFGK---RLEVNFSKHPNI 331
++ +L +++S+H ++
Sbjct: 307 IYDGGYCKLRLSYSRHTDL 325
Score = 65 (27.9 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 375 VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFE---TEEQATEALVCKHASSLGGSI- 430
VT + + + +G++ +FE NG QAL+ + T A EAL H GG
Sbjct: 256 VTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALE-GHCIYDGGYCK 314
Query: 431 IRISFSQ 437
+R+S+S+
Sbjct: 315 LRLSYSR 321
>UNIPROTKB|F1LZ79 [details] [associations]
symbol:F1LZ79 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
IPI:IPI00561021 Ensembl:ENSRNOT00000006719 ArrayExpress:F1LZ79
Uniprot:F1LZ79
Length = 485
Score = 296 (109.3 bits), Expect = 4.2e-40, Sum P(2) = 4.2e-40
Identities = 62/194 (31%), Positives = 115/194 (59%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + DL++ Q FG I+ +V++ K Q L++ +DV A NA+++
Sbjct: 6 TPASPVVHIRGLIGRVVGADLVEALQEFGSISYVVVMPKKRQTLVEFEDVLGACNAVKYA 65
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G ++ + + Q+++ + + N +LL TI + +Y IT +VL+ +
Sbjct: 66 ADNQIYIAGHPAFINYCTSQKISRPGDSEDSQSI--NSVLLFTILNPIYSITTDVLYTIC 123
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G +++ V F+++ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 124 NPCGPIQRTVIFREN-GVQAMVEFDSVQSAQSAKASLDGADIYSGCCTLTIEYAKPTRLN 182
Query: 182 VNYNNERSRDFTNP 195
V+ NN+ + D+TNP
Sbjct: 183 VSKNNQDTWDYTNP 196
Score = 184 (69.8 bits), Expect = 4.2e-40, Sum P(2) = 4.2e-40
Identities = 58/199 (29%), Positives = 108/199 (54%)
Query: 239 FGGGLPPGITGTN-DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQ 297
+G PP G + D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+
Sbjct: 263 YGPYPPPPDYGPHADSPVLIVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVE 322
Query: 298 MGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLN-RFN 349
M DG+ + A+ L +FG+++ V SK P I G ++++ + + N R +
Sbjct: 323 MADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLERSCSYKHFSESRNSRLS 382
Query: 350 --RNAAKNYRYCCSPTKMIHL-STLPQDVTEE--EIVSHLE-EHGSIVNTKLFEMNGKKQ 403
AAKN+ P+ ++H S+ P + E EI LE +H + V K+F +GK++
Sbjct: 383 TPEQAAKNHIQ--HPSNVLHFFSSHPGGDSVEFFEICDELEVKHPTSV--KVF--SGKRE 436
Query: 404 ----ALVLFETEEQATEAL 418
L+ ++++ A E L
Sbjct: 437 HSSSGLLEWDSKSDALETL 455
>UNIPROTKB|F1M040 [details] [associations]
symbol:F1M040 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 IPI:IPI00952207
Ensembl:ENSRNOT00000006710 ArrayExpress:F1M040 Uniprot:F1M040
Length = 488
Score = 296 (109.3 bits), Expect = 7.2e-40, Sum P(2) = 7.2e-40
Identities = 62/194 (31%), Positives = 115/194 (59%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + DL++ Q FG I+ +V++ K Q L++ +DV A NA+++
Sbjct: 6 TPASPVVHIRGLIGRVVGADLVEALQEFGSISYVVVMPKKRQTLVEFEDVLGACNAVKYA 65
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G ++ + + Q+++ + + N +LL TI + +Y IT +VL+ +
Sbjct: 66 ADNQIYIAGHPAFINYCTSQKISRPGDSEDSQSI--NSVLLFTILNPIYSITTDVLYTIC 123
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G +++ V F+++ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 124 NPCGPIQRTVIFREN-GVQAMVEFDSVQSAQSAKASLDGADIYSGCCTLTIEYAKPTRLN 182
Query: 182 VNYNNERSRDFTNP 195
V+ NN+ + D+TNP
Sbjct: 183 VSKNNQDTWDYTNP 196
Score = 182 (69.1 bits), Expect = 7.2e-40, Sum P(2) = 7.2e-40
Identities = 56/192 (29%), Positives = 103/192 (53%)
Query: 244 PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 303
PP D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+
Sbjct: 273 PPDYGPHADSPVLIVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA 332
Query: 304 AELAVHFLKGALLFGKRLEVNFSKHPNITQGAD-------THEYMNSNLN-RFN--RNAA 353
+ A+ L +FG+++ V SK P I G ++++ + + N R + AA
Sbjct: 333 VDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLERSCSYKHFSESRNSRLSTPEQAA 392
Query: 354 KNYRYCCSPTKMIHL-STLPQ-DVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQ----ALV 406
KN+ P+ ++H S+ P D EI LE +H + V K+F +GK++ L+
Sbjct: 393 KNHIQ--HPSNVLHFFSSHPGGDSKFFEICDELEVKHPTSV--KVF--SGKREHSSSGLL 446
Query: 407 LFETEEQATEAL 418
++++ A E L
Sbjct: 447 EWDSKSDALETL 458
>WB|WBGene00016624 [details] [associations]
symbol:C44B7.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:FO080141 eggNOG:NOG326285 KO:K13159
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOGENOM:HOG000293298 OMA:RPTSVKV RefSeq:NP_495411.2
ProteinModelPortal:Q95QR5 SMR:Q95QR5 STRING:Q95QR5 PaxDb:Q95QR5
PRIDE:Q95QR5 EnsemblMetazoa:C44B7.2a.1 EnsemblMetazoa:C44B7.2a.2
EnsemblMetazoa:C44B7.2a.3 GeneID:3565706 KEGG:cel:CELE_C44B7.2
UCSC:C44B7.2a.1 CTD:3565706 WormBase:C44B7.2a InParanoid:Q95QR5
NextBio:957535 ArrayExpress:Q95QR5 Uniprot:Q95QR5
Length = 597
Score = 283 (104.7 bits), Expect = 5.3e-36, Sum P(2) = 5.3e-36
Identities = 60/202 (29%), Positives = 108/202 (53%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS V+HVRN+ +++E DLL+ FG + + AL++ +D+ A + F T+
Sbjct: 30 PSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCIPHSRMALVEFEDIEGAKACVNFATS 89
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123
Q + G+ +S+ Q + M + PN++L+VT+ + YPI +V++Q+ +
Sbjct: 90 NQINVGGQGALFNYSTSQCIERMGFESA----TPNKVLVVTVLNAQYPIDADVIYQISNA 145
Query: 124 HGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVN 183
G V ++ K QAL++++ A A+ ++ G +IY GCC L ++F+ D ++V
Sbjct: 146 QGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAKPDRVRVQ 205
Query: 184 YNNERSRDFTNP-NLPAEQKGR 204
++ RDFT P N + GR
Sbjct: 206 RQDKDQRDFTLPDNESFQDTGR 227
Score = 169 (64.5 bits), Expect = 5.3e-36, Sum P(2) = 5.3e-36
Identities = 66/235 (28%), Positives = 103/235 (43%)
Query: 205 PSQSGYSEAGGM---YAPGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSN 260
PS GYS GG Y G R P G P G G C +++
Sbjct: 258 PSSYGYSSRGGGHSDYYGGDRGGPPHPPPSRYRDDYEDRGYAQPAG--G-GPGCVMMIYG 314
Query: 261 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 320
L +I+ D LFN+ YGN++RI +R K + ++++G + + + FL+G+ LFG
Sbjct: 315 LEHGKINCDMLFNILCQYGNVLRISFMRTKTETGIIELGTPEERQNVLDFLQGSALFGLT 374
Query: 321 LE--------VNFSKHPNIT-QGADTH-EYMNSNLNRFNRN--AAKNYRYCCSPTKMIHL 368
LE V+ + P + G+ + +Y +S RF+ AAKN PT +H
Sbjct: 375 LEFKPSHQECVHHLRDPFLLPDGSPSFKDYSSSRNQRFSTPELAAKNR--IIFPTNTLHW 432
Query: 369 STLPQDVTEE---EIVSHLEEHGSIVNTKLFEMNGKKQAL--VLFETEEQATEAL 418
P + E+ ++++ EH V +F ++ A FET E A E L
Sbjct: 433 FNAPGTMDEQALLDLMAEKTEHKP-VKIDIFPSRNERSAAGTAEFETVEIANEVL 486
>UNIPROTKB|K7EK45 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC006273 HGNC:HGNC:9583
Ensembl:ENST00000585956 Uniprot:K7EK45
Length = 256
Score = 281 (104.0 bits), Expect = 7.7e-36, Sum P(2) = 7.7e-36
Identities = 59/127 (46%), Positives = 81/127 (63%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 4 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQH 61
Query: 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS + A
Sbjct: 62 AKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS-QPSLD-QTMA 119
Query: 214 GGMYAPG 220
APG
Sbjct: 120 AAFGAPG 126
Score = 126 (49.4 bits), Expect = 7.7e-36, Sum P(2) = 7.7e-36
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 283 RIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 331
R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH N+
Sbjct: 199 RVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 247
Score = 71 (30.1 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQ--ALLQMQDVPSAINALQFYTNVQ 65
I V N+ + ++ + L Q+F FG + K++ NQ ALLQ D SA +A +
Sbjct: 11 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA-------K 63
Query: 66 PTIRGRNVY 74
++ G+N+Y
Sbjct: 64 LSLDGQNIY 72
Score = 67 (28.6 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 21/77 (27%), Positives = 29/77 (37%)
Query: 198 PAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTV 256
P G P +A G+ P P G + PG+ G + +
Sbjct: 132 PYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNS-VL 190
Query: 257 LVSNLNSDRIDEDKLFN 273
LVSNLN +R+ LFN
Sbjct: 191 LVSNLNPERVKI--LFN 205
Score = 51 (23.0 bits), Expect = 5.5e-28, Sum P(2) = 5.5e-28
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 399 NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 442
N K+ ALV QA A+ + L G IRI+ S+ Q+++
Sbjct: 205 NKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 248
>TAIR|locus:2163746 [details] [associations]
symbol:PTB2 "AT5G53180" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0009846 "pollen germination" evidence=IGI] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0006417
"regulation of translation" evidence=IEP] [GO:0043484 "regulation
of RNA splicing" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0009845 "seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0000932 GO:GO:0009846 EMBL:AB025622
HOGENOM:HOG000238077 KO:K14948 EMBL:BT015760 EMBL:BT020199
IPI:IPI00533493 RefSeq:NP_200130.1 UniGene:At.43107
ProteinModelPortal:Q9FGL9 SMR:Q9FGL9 IntAct:Q9FGL9 STRING:Q9FGL9
PaxDb:Q9FGL9 PRIDE:Q9FGL9 EnsemblPlants:AT5G53180.1 GeneID:835399
KEGG:ath:AT5G53180 GeneFarm:5075 TAIR:At5g53180 eggNOG:NOG263807
InParanoid:Q9FGL9 OMA:KKMEPES PhylomeDB:Q9FGL9
ProtClustDB:CLSN2720458 Genevestigator:Q9FGL9 GermOnline:AT5G53180
Uniprot:Q9FGL9
Length = 429
Score = 355 (130.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 82/207 (39%), Positives = 128/207 (61%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ +D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH-HMLYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ + A D +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTA----DVVGNVLLVTIEGDDARMVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI--Y-----DGCCQLD 171
VFS GFV KI TF+K+AG+QAL+Q+ +A A+ +L GR+I Y G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLK 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLP 198
I +S +L V + + RSRD+TNP LP
Sbjct: 192 ITYSAHTDLTVKFQSHRSRDYTNPYLP 218
Score = 263 (97.6 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 55/122 (45%), Positives = 79/122 (64%)
Query: 92 GRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
G+ EP + +LL +I +M Y +T++VLH VF+ G V+KI F K+ G QALIQY +
Sbjct: 236 GKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQT 295
Query: 151 AVVARSSLQGRNIYDG-CCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSG 209
AVVA+ +L+G IYDG C+L I +S +L + NN+RSRD+T PN P +P Q+
Sbjct: 296 AVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPVPMPQQPVQNP 355
Query: 210 YS 211
Y+
Sbjct: 356 YA 357
Score = 125 (49.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 356 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 415
+RY P+K++HL LP + TEEE++ + G++VNTK + QA + FE QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69
Query: 416 EALVCKHASS-----LGGSIIRISFSQLQSIREN 444
+ ++ +ASS + G + + +S Q I N
Sbjct: 70 Q-MISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
Score = 46 (21.3 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 388 GSIVNTKLFEMNGKKQALVLF---ETEEQATEALVCKHASSLGGSI-IRISFSQ 437
G + +F+ NG QAL+ + +T A EAL H GG + I++S+
Sbjct: 270 GEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALE-GHCIYDGGFCKLHITYSR 322
>DICTYBASE|DDB_G0275365 [details] [associations]
symbol:DDB_G0275365 "Heterogeneous nuclear
ribonucleoprotein L" species:44689 "Dictyostelium discoideum"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275365 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AAFI02000013 eggNOG:NOG326285
TIGRFAMs:TIGR01649 RefSeq:XP_643683.1 ProteinModelPortal:Q553T2
EnsemblProtists:DDB0202577 GeneID:8619950 KEGG:ddi:DDB_G0275365
InParanoid:Q553T2 OMA:SITDSHN Uniprot:Q553T2
Length = 695
Score = 213 (80.0 bits), Expect = 6.2e-33, Sum P(3) = 6.2e-33
Identities = 50/132 (37%), Positives = 77/132 (58%)
Query: 253 RCTVL-VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 311
R TVL V L+ + D++FNLF +YGN+ R+K+L +K ALVQM D QAE + F
Sbjct: 370 RTTVLLVHGLDEAVMTCDRIFNLFCVYGNVQRVKILSSKKGAALVQMEDVQQAEAVIRFY 429
Query: 312 KGALLFGKRLEVNFSKHPNITQGAD------THEYMNSNLNRFNRNAAKNYRYCCSPTKM 365
LF L++N+SKH +IT + + ++ SNLNRF + Y++ P++
Sbjct: 430 HQMPLFKDTLQINYSKHLSITDSHNPESPTLSKDFAQSNLNRFT-HPINTYKHLYKPSQT 488
Query: 366 IHLSTLPQDVTE 377
++ S +P+D TE
Sbjct: 489 LYFSNVPKDFTE 500
Score = 151 (58.2 bits), Expect = 6.2e-33, Sum P(3) = 6.2e-33
Identities = 44/154 (28%), Positives = 71/154 (46%)
Query: 66 PTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLHQVFSPH 124
P+ N Q S Q + N +LL TI + IT++ L+ VFS
Sbjct: 124 PSSSSYNGLPQAGSRQ--SNFSPNTNNSAPIAGTVLLSTIENPGSNSITIDHLYHVFSSC 181
Query: 125 GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGC-CQLDIQFSNLDELQVN 183
G V +IV F K+ QALI++ SA+ A+ +L +++ G C L ++ S D L +
Sbjct: 182 GEVLRIVMFNKN-NLQALIEFSTVESALHAKKTLSNHSLFHGGQCTLKLEVSKTDRLNIT 240
Query: 184 YNNERSRDFTN--PNLPAEQKGRPSQSGYSEAGG 215
N +R++DF+ P + Q Y ++ G
Sbjct: 241 QNTDRAKDFSKSLPTVNQSSSSSSQQQSYYQSNG 274
Score = 113 (44.8 bits), Expect = 6.2e-33, Sum P(3) = 6.2e-33
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 4 PSKVIHVRNVGHEISENDLLQL-FQ-PFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
PS V+H+R++ +ENDL ++ F FG + +L +QALL+M V SA L++
Sbjct: 14 PSAVLHIRSIPQGTTENDLFKITFDHKFGKCVSVRILERFHQALLEMDSVESATRLLKYS 73
Query: 62 TNVQPTIRGRNVYVQFSSHQEL 83
+ G+ V + FS Q +
Sbjct: 74 QKNSLLLHGKPVQISFSKSQSI 95
Score = 66 (28.3 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 10 VRNVG-HEISENDLLQLFQPFGVITKLVMLRAKN-QALLQMQDVPSAINALQFYTN 63
+ N G + I+ + L +F G + ++VM N QAL++ V SA++A + +N
Sbjct: 161 IENPGSNSITIDHLYHVFSSCGEVLRIVMFNKNNLQALIEFSTVESALHAKKTLSN 216
Score = 51 (23.0 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 22/87 (25%), Positives = 37/87 (42%)
Query: 368 LSTLPQDVTEEEIVSHL----EEHGSIVNTKLFEMNGKKQALVLFETEEQATEA--LVCK 421
LST+ + + HL G ++ +F N QAL+ F T E A A +
Sbjct: 158 LSTIENPGSNSITIDHLYHVFSSCGEVLRIVMFNKNNL-QALIEFSTVESALHAKKTLSN 216
Query: 422 HASSLGGSI---IRISFSQLQSIRENS 445
H+ GG + +S + +I +N+
Sbjct: 217 HSLFHGGQCTLKLEVSKTDRLNITQNT 243
Score = 50 (22.7 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 23/108 (21%), Positives = 46/108 (42%)
Query: 338 HEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDV-TEEEIVSHLEEHGSIVNTKLF 396
H + + + N N + + ++H L + V T + I + +G++ K+
Sbjct: 348 HNHHGGSHHHHNHQNGGNIGHHRTTVLLVH--GLDEAVMTCDRIFNLFCVYGNVQRVKIL 405
Query: 397 EMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIREN 444
K ALV E +QA + H L ++I++S+ SI ++
Sbjct: 406 SSK-KGAALVQMEDVQQAEAVIRFYHQMPLFKDTLQINYSKHLSITDS 452
Score = 39 (18.8 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 332 TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEH 387
+QG+ H + N+N N N ++ SP++ H S T ++I +H H
Sbjct: 298 SQGSHHHHHNNNN----NNNHHSHHH--SSPSQHPHHSGSVS--TNQQIGNHHSHH 345
>FB|FBgn0003435 [details] [associations]
symbol:sm "smooth" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007411 "axon guidance" evidence=IMP] [GO:0008343 "adult
feeding behavior" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0007411
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0008343
KO:K13159 GeneTree:ENSGT00550000074508 UniGene:Dm.7773 GeneID:37254
KEGG:dme:Dmel_CG9218 CTD:37254 FlyBase:FBgn0003435 ChiTaRS:sm
GenomeRNAi:37254 NextBio:802755 EMBL:BT011352 RefSeq:NP_001027439.2
SMR:Q6NND8 STRING:Q6NND8 EnsemblMetazoa:FBtr0301609 Uniprot:Q6NND8
Length = 480
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 111/353 (31%), Positives = 167/353 (47%)
Query: 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
PN ILL TI + YPITV+VLH++ PHG V +IV F+K+ G QA++++ +A AR
Sbjct: 79 PNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARE 137
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNE--RSRDFTNPN---LPAEQKGRPSQS--- 208
+L G +IY GCC L I ++ ++L V Y NE S D+T LP P +
Sbjct: 138 NLNGADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYTLSTGEILPKPPLLGPGAAFPP 196
Query: 209 -GYSEAGGMYAPGARAVAF-PQMXXXXXXXXXFGGGLPPGIT--GTNDRCTVLVSNLNSD 264
G E + A P G P T G ++V L+ D
Sbjct: 197 FGAPEYHTTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQGAVMMVYGLDHD 256
Query: 265 RIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL-FGKRLEV 323
+ DKLFNL LYGN+ RIK L+ K A+VQMGD E V L + G ++++
Sbjct: 257 TSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQI 316
Query: 324 NFSKHPNITQGADT-----H-----EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQ 373
FSK +++ + H EY S NRF A + P+K++H P
Sbjct: 317 AFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPP 376
Query: 374 DVTEEEIVSHLE-EHGSIVNTKLFEMNGKKQA--LVLFETEEQATEALV-CKH 422
+TE++++ + + +LF + ++ + L+ F QA A++ C H
Sbjct: 377 GLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMKCNH 429
>UNIPROTKB|Q5JB52 [details] [associations]
symbol:HNRPLL "Stromal RNA regulating factor" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC011247
UniGene:Hs.445497 HGNC:HGNC:25127 HOVERGEN:HBG105786
TIGRFAMs:TIGR01649 HOGENOM:HOG000293298 IPI:IPI00745396
EMBL:AY236962 SMR:Q5JB52 STRING:Q5JB52 Ensembl:ENST00000409328
Uniprot:Q5JB52
Length = 508
Score = 215 (80.7 bits), Expect = 5.6e-32, Sum P(2) = 5.6e-32
Identities = 48/142 (33%), Positives = 86/142 (60%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALI 143
+P G V++IV F+++ G QA++
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMV 210
Score = 207 (77.9 bits), Expect = 5.6e-32, Sum P(2) = 5.6e-32
Identities = 83/280 (29%), Positives = 124/280 (44%)
Query: 177 LDELQVNYNNERSRDFTNPNLPAEQKGR-----------PSQ---SGYSEAGGM------ 216
+D L V N+ S D+T P L +G+ PS GY G +
Sbjct: 210 VDRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSR 269
Query: 217 YAPGAR----AVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLF 272
Y G+R VA+P GG P G V+VS L+ +++ ++F
Sbjct: 270 YRMGSRDTPELVAYP---LPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVF 319
Query: 273 NLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK-H--- 328
NLF LYGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK H
Sbjct: 320 NLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVV 379
Query: 329 PN----ITQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSH 383
P+ + G ++ ++ S NRF + P+ ++H +P VTEE
Sbjct: 380 PSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 439
Query: 384 LEEHG--SIVNTKLFEMNGKKQAL--VL-FETEEQATEAL 418
+H + + K+F+ + L +L +E + A EAL
Sbjct: 440 CNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 479
>UNIPROTKB|B7WPG3 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC011247 HGNC:HGNC:25127 HOVERGEN:HBG105786 TIGRFAMs:TIGR01649
HOGENOM:HOG000293298 IPI:IPI00745396 SMR:B7WPG3 STRING:B7WPG3
Ensembl:ENST00000378915 Uniprot:B7WPG3
Length = 508
Score = 212 (79.7 bits), Expect = 6.8e-31, Sum P(2) = 6.8e-31
Identities = 48/141 (34%), Positives = 85/141 (60%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQAL 142
+P G V++IV F+++ G QA+
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAM 209
Score = 200 (75.5 bits), Expect = 6.8e-31, Sum P(2) = 6.8e-31
Identities = 82/277 (29%), Positives = 122/277 (44%)
Query: 180 LQVNYNNERSRDFTNPNLPAEQKGR-----------PSQ---SGYSEAGGM------YAP 219
L V N+ S D+T P L +G+ PS GY G + Y
Sbjct: 213 LNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRM 272
Query: 220 GAR----AVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLF 275
G+R VA+P GG P G V+VS L+ +++ ++FNLF
Sbjct: 273 GSRDTPELVAYP---LPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLF 322
Query: 276 SLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK-H---PN- 330
LYGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK H P+
Sbjct: 323 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQ 382
Query: 331 ---ITQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEE 386
+ G ++ ++ S NRF + P+ ++H +P VTEE +
Sbjct: 383 IFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCND 442
Query: 387 HG--SIVNTKLFEMNGKKQAL--VL-FETEEQATEAL 418
H + + K+F+ + L +L +E + A EAL
Sbjct: 443 HEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 479
>UNIPROTKB|F1S548 [details] [associations]
symbol:LOC100739008 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP085536 RefSeq:XP_003481556.1
Ensembl:ENSSSCT00000007534 GeneID:100739008 KEGG:ssc:100739008
OMA:IQMSTIE Uniprot:F1S548
Length = 255
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 80/228 (35%), Positives = 123/228 (53%)
Query: 219 PGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277
PGA + +A P G+P G N +LVSNLN + + LF LF +
Sbjct: 27 PGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNT--VLLVSNLNEEMVTPQSLFTLFGV 84
Query: 278 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QG 334
YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH + +G
Sbjct: 85 YGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREG 144
Query: 335 AD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI 390
D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++ + G
Sbjct: 145 LDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGT 204
Query: 391 VNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IRISFSQ 437
V F K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 205 VKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 252
>UNIPROTKB|I3LG16 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0033120 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QIRIPNG Ensembl:ENSSSCT00000024049
Uniprot:I3LG16
Length = 537
Score = 336 (123.3 bits), Expect = 4.4e-30, P = 4.4e-30
Identities = 123/455 (27%), Positives = 201/455 (44%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 66 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 125
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVT--IHHMLYPITVEVLHQVFS 122
I G+ + +S+ + +T G +L + ++ + + V + V
Sbjct: 126 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK 185
Query: 123 PHGFVE-KIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
V K Q + + L A A+++L G +IY GCC L I+++ L
Sbjct: 186 VQRIVIFKRNGIQAMVEYPLFFKSVL--CAQKAKAALNGADIYAGCCTLKIEYARPTRLN 243
Query: 182 VNYNNERSRDFTNPNLPAEQKGR-----------PSQ---SGYSEAGGM------YAPGA 221
V N+ S D+T P L +G+ PS GY G + Y G+
Sbjct: 244 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 303
Query: 222 R----AVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277
R VA+P GG P G V+VS L+ +++ ++FNLF L
Sbjct: 304 RDTPELVAYP---LPQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCL 353
Query: 278 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH----PN--- 330
YGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK P+
Sbjct: 354 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVWCSKQLSVVPSQIF 413
Query: 331 -ITQGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 388
+ G ++ ++ S NRF + P+ ++H +P VTEE +H
Sbjct: 414 ELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHE 473
Query: 389 --SIVNTKLFEMNGKKQAL--VL-FETEEQATEAL 418
+ + K+F+ + L +L +E + A EAL
Sbjct: 474 VLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEAL 508
>UNIPROTKB|K7ES59 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC006273 HGNC:HGNC:9583
Ensembl:ENST00000586481 Uniprot:K7ES59
Length = 209
Score = 208 (78.3 bits), Expect = 3.7e-28, Sum P(2) = 3.7e-28
Identities = 37/90 (41%), Positives = 61/90 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 27 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 86
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 87 VTPVLRGQPIYIQFSNHKELKTDSSPNQAR 116
Score = 134 (52.2 bits), Expect = 3.7e-28, Sum P(2) = 3.7e-28
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY
Sbjct: 149 GQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 198
Score = 113 (44.8 bits), Expect = 0.00037, P = 0.00037
Identities = 38/113 (33%), Positives = 57/113 (50%)
Query: 341 MNSN-LNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 395
M+SN + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 1 MSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--L 58
Query: 396 FEMNGKKQALVLFETEEQATEALVCKHASS---LGGSIIRISFSQLQSIRENS 445
+ GK QA + TEE A +V + S L G I I FS + ++ +S
Sbjct: 59 LMLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 110
Score = 57 (25.1 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 247 ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAE 305
+ G + ++V NL + D L +FS +G +++I +N AL+Q D A+
Sbjct: 147 MAGQSPVLRIIVENLFYP-VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQ 205
Query: 306 LA 307
A
Sbjct: 206 HA 207
Score = 41 (19.5 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 417
SP I + L VT + + + G+++ F N + QAL+ + A A
Sbjct: 151 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA 207
>UNIPROTKB|F6Q0P6 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 GeneTree:ENSGT00550000074508 EMBL:DAAA02007826
IPI:IPI00876801 Ensembl:ENSBTAT00000011602 OMA:HICNACC
Uniprot:F6Q0P6
Length = 236
Score = 195 (73.7 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 35/91 (38%), Positives = 62/91 (68%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQ 91
V P +R + +Y+Q+S+H+EL T+ Q AQ
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQ 147
Score = 142 (55.0 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 143
TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+
Sbjct: 166 TTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALL 223
Query: 144 QY 145
QY
Sbjct: 224 QY 225
Score = 59 (25.8 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGDGFQAELA 307
+++ N+ + D L +FS +G +++I +N AL+Q GD A+ A
Sbjct: 183 IIIDNMYYP-VTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Score = 42 (19.8 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 417
SP I + + VT + + + G+++ F N + QAL+ + A +A
Sbjct: 178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
>UNIPROTKB|H7BXH8 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC011247 HGNC:HGNC:25127 TIGRFAMs:TIGR01649
ProteinModelPortal:H7BXH8 PRIDE:H7BXH8 Ensembl:ENST00000272249
Uniprot:H7BXH8
Length = 217
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 67/196 (34%), Positives = 117/196 (59%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 10 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 69
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 70 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 124
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 125 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 183
Query: 182 VNYNNERSRDFTNPNL 197
V N+ S D+T P L
Sbjct: 184 VIRNDNDSWDYTKPYL 199
>UNIPROTKB|A6NLN1 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471242
TIGRFAMs:TIGR01649 EMBL:AC006273 UniGene:Hs.172550 DNASU:5725
HGNC:HGNC:9583 PharmGKB:PA33934 GenomeRNAi:5725 NextBio:22252
IPI:IPI00413691 SMR:A6NLN1 STRING:A6NLN1 Ensembl:ENST00000350092
UCSC:uc002lps.2 HOGENOM:HOG000045782 HOVERGEN:HBG055095
Uniprot:A6NLN1
Length = 197
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 67/185 (36%), Positives = 108/185 (58%)
Query: 261 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 320
+ + R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK
Sbjct: 10 VGTKRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 69
Query: 321 LEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQ 373
+ + SKH N+ +G + T +Y NS L+RF + +KN++ P+ +HLS +P
Sbjct: 70 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPP 129
Query: 374 DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-IR 432
V+EE++ +G +V F +K AL+ + E+A +AL+ H LG + +R
Sbjct: 130 SVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLR 189
Query: 433 ISFSQ 437
+SFS+
Sbjct: 190 VSFSK 194
>UNIPROTKB|C9IYN3 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC011247 IPI:IPI00554613 HGNC:HGNC:25127 TIGRFAMs:TIGR01649
ProteinModelPortal:C9IYN3 SMR:C9IYN3 STRING:C9IYN3
Ensembl:ENST00000358367 HOGENOM:HOG000168824 ArrayExpress:C9IYN3
Bgee:C9IYN3 Uniprot:C9IYN3
Length = 282
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 67/196 (34%), Positives = 116/196 (59%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA++ ++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNL 197
V N+ S D+T P L
Sbjct: 249 VIRNDNDSWDYTKPYL 264
>UNIPROTKB|E1C5J2 [details] [associations]
symbol:E1C5J2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:AADN02057711 EMBL:AADN02057712
EMBL:AADN02057713 IPI:IPI00822931 Ensembl:ENSGALT00000037624
ArrayExpress:E1C5J2 Uniprot:E1C5J2
Length = 288
Score = 280 (103.6 bits), Expect = 2.7e-24, P = 2.7e-24
Identities = 68/164 (41%), Positives = 95/164 (57%)
Query: 36 VMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD 95
V ++ N L+ +PS +A Q V T++ NV V + E G
Sbjct: 109 VYVQYSNHRELKTDSLPSQASA-QAALQVVNTVQCGNVGVTSTFAAE--------SGLPP 159
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+ +L + I ++ YP+++EVL+Q+FS GFV KIVTF ++ FQALIQY +A A+
Sbjct: 160 GHSSVLRIIIENLFYPVSLEVLYQIFSKFGFVLKIVTFTRNNQFQALIQYAEPVNAYYAK 219
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA 199
+L GRNIY+ CC L I FS L L+V YNNE+SRDFT +LPA
Sbjct: 220 MALNGRNIYNACCTLHIDFSKLTSLKVKYNNEKSRDFTRFDLPA 263
Score = 169 (64.5 bits), Expect = 9.8e-15, Sum P(2) = 9.8e-15
Identities = 31/82 (37%), Positives = 54/82 (65%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +E D++ L PFG +T +++LR K+QA L+M +A++ + + +
Sbjct: 40 PSRVLHLRQIPDNATEADVISLGLPFGKVTNVLILRGKSQAFLEMASEENAVSMVNYCST 99
Query: 64 VQPTIRGRNVYVQFSSHQELTT 85
P I + VYVQ+S+H+EL T
Sbjct: 100 AIPHIHNQPVYVQYSNHRELKT 121
Score = 80 (33.2 bits), Expect = 9.8e-15, Sum P(2) = 9.8e-15
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 242 GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGD 300
GLPPG + +++ NL + + L+ +FS +G +++I RN AL+Q +
Sbjct: 156 GLPPGHSSV---LRIIIENLFYP-VSLEVLYQIFSKFGFVLKIVTFTRNNQFQALIQYAE 211
Query: 301 GFQAELAVHFLKGALLFGK--RLEVNFSK 327
A A L G ++ L ++FSK
Sbjct: 212 PVNAYYAKMALNGRNIYNACCTLHIDFSK 240
>UNIPROTKB|F1ND44 [details] [associations]
symbol:F1ND44 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0033119 "negative regulation of RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0033119
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 EMBL:AADN02057711
EMBL:AADN02057712 EMBL:AADN02057713 IPI:IPI00604250
Ensembl:ENSGALT00000025267 OMA:FLEMASI ArrayExpress:F1ND44
Uniprot:F1ND44
Length = 364
Score = 280 (103.6 bits), Expect = 2.7e-24, P = 2.7e-24
Identities = 68/164 (41%), Positives = 95/164 (57%)
Query: 36 VMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD 95
V ++ N L+ +PS +A Q V T++ NV V + E G
Sbjct: 125 VYVQYSNHRELKTDSLPSQASA-QAALQVVNTVQCGNVGVTSTFAAE--------SGLPP 175
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVAR 155
+ +L + I ++ YP+++EVL+Q+FS GFV KIVTF ++ FQALIQY +A A+
Sbjct: 176 GHSSVLRIIIENLFYPVSLEVLYQIFSKFGFVLKIVTFTRNNQFQALIQYAEPVNAYYAK 235
Query: 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPA 199
+L GRNIY+ CC L I FS L L+V YNNE+SRDFT +LPA
Sbjct: 236 MALNGRNIYNACCTLHIDFSKLTSLKVKYNNEKSRDFTRFDLPA 279
Score = 169 (64.5 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 31/82 (37%), Positives = 54/82 (65%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + +E D++ L PFG +T +++LR K+QA L+M +A++ + + +
Sbjct: 56 PSRVLHLRQIPDNATEADVISLGLPFGKVTNVLILRGKSQAFLEMASEENAVSMVNYCST 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT 85
P I + VYVQ+S+H+EL T
Sbjct: 116 AIPHIHNQPVYVQYSNHRELKT 137
Score = 80 (33.2 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 242 GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRI-KLLRNKPDHALVQMGD 300
GLPPG + +++ NL + + L+ +FS +G +++I RN AL+Q +
Sbjct: 172 GLPPGHSSV---LRIIIENLFYP-VSLEVLYQIFSKFGFVLKIVTFTRNNQFQALIQYAE 227
Query: 301 GFQAELAVHFLKGALLFGK--RLEVNFSK 327
A A L G ++ L ++FSK
Sbjct: 228 PVNAYYAKMALNGRNIYNACCTLHIDFSK 256
>UNIPROTKB|K7ELW5 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC006273 HGNC:HGNC:9583
Ensembl:ENST00000585535 Uniprot:K7ELW5
Length = 233
Score = 206 (77.6 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 38/92 (41%), Positives = 62/92 (67%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT-MEQNAQGRG 94
V P +RG+ +Y+QFS+H+EL T N RG
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQAVRG 148
Score = 113 (44.8 bits), Expect = 0.00052, P = 0.00052
Identities = 38/113 (33%), Positives = 57/113 (50%)
Query: 341 MNSN-LNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 395
M+SN + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--L 88
Query: 396 FEMNGKKQALVLFETEEQATEALVCKHASS---LGGSIIRISFSQLQSIRENS 445
+ GK QA + TEE A +V + S L G I I FS + ++ +S
Sbjct: 89 LMLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
Score = 61 (26.5 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 94 GDEPNRILLVTIHHMLYPITVEVLHQ 119
G P +L + + ++ YP+T++VLHQ
Sbjct: 210 GQSP--VLRIIVENLFYPVTLDVLHQ 233
>UNIPROTKB|C9JJZ7 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC011247 HGNC:HGNC:25127 HOGENOM:HOG000168824 IPI:IPI00915954
ProteinModelPortal:C9JJZ7 SMR:C9JJZ7 STRING:C9JJZ7
Ensembl:ENST00000425682 ArrayExpress:C9JJZ7 Bgee:C9JJZ7
Uniprot:C9JJZ7
Length = 149
Score = 215 (80.7 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 48/142 (33%), Positives = 86/142 (60%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 14 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 73
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 74 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 128
Query: 122 SPHGFVEKIVTFQKSAGFQALI 143
+P G V++IV F+++ G QA++
Sbjct: 129 NPVGKVQRIVIFKRN-GIQAMV 149
>RGD|1359551 [details] [associations]
symbol:Fblim1 "filamin binding LIM protein 1" species:10116
"Rattus norvegicus" [GO:0001725 "stress fiber" evidence=ISO]
[GO:0016337 "cell-cell adhesion" evidence=ISO] [GO:0030054 "cell
junction" evidence=ISO] [GO:0031005 "filamin binding" evidence=ISO]
[GO:0033623 "regulation of integrin activation" evidence=ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1359551
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 TIGRFAMs:TIGR01649 HOGENOM:HOG000293298
OrthoDB:EOG4RFKSD UniGene:Rn.33873 IPI:IPI00364061 EMBL:BC086392
EMBL:AB260892 STRING:Q5U1Y5 UCSC:RGD:1359551 HOVERGEN:HBG058843
InParanoid:Q5U1Y5 Genevestigator:Q5U1Y5 Uniprot:Q5U1Y5
Length = 245
Score = 209 (78.6 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 55/190 (28%), Positives = 95/190 (50%)
Query: 244 PPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 303
PP D ++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+
Sbjct: 28 PPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA 87
Query: 304 AELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNA 352
+ A+ L +FG+++ V SK P I G ++ S NRF+ A
Sbjct: 88 VDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQA 147
Query: 353 AKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLF 408
AKN P+ ++H P +VTEE +E G T + +GK + L+ +
Sbjct: 148 AKNRIQ--HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEW 205
Query: 409 ETEEQATEAL 418
+++ A E L
Sbjct: 206 DSKSDALETL 215
>UNIPROTKB|K7EKJ7 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC006273 HGNC:HGNC:9583
Ensembl:ENST00000589575 Uniprot:K7EKJ7
Length = 236
Score = 205 (77.2 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 35/82 (42%), Positives = 59/82 (71%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT 85
V P +RG+ +Y+QFS+H+EL T
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKT 138
Score = 137 (53.3 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 36 VMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGD 95
+ ++ N L+ P+ ALQ +VQ G N+ + S+ ++ G
Sbjct: 126 IYIQFSNHKELKTDSSPNQAAALQAVNSVQS---G-NLALAASA----AAVDAGMAMAGQ 177
Query: 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 145
P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY
Sbjct: 178 SP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 225
Score = 113 (44.8 bits), Expect = 0.00054, P = 0.00054
Identities = 38/113 (33%), Positives = 57/113 (50%)
Query: 341 MNSN-LNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKL 395
M+SN + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--L 88
Query: 396 FEMNGKKQALVLFETEEQATEALVCKHASS---LGGSIIRISFSQLQSIRENS 445
+ GK QA + TEE A +V + S L G I I FS + ++ +S
Sbjct: 89 LMLKGKNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>UNIPROTKB|I3LPU8 [details] [associations]
symbol:HNRNPL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045120 "pronucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0044212 GO:GO:0045120 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP565352
Ensembl:ENSSSCT00000031006 OMA:PNLSGQX Uniprot:I3LPU8
Length = 205
Score = 203 (76.5 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 53/177 (29%), Positives = 91/177 (51%)
Query: 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALL 316
+V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L +
Sbjct: 1 MVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFM 60
Query: 317 FGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPTKM 365
FG++L V SK P I G ++ S NRF+ AAKN P+ +
Sbjct: 61 FGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ--HPSNV 118
Query: 366 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 418
+H P +VTEE +E G + + +GK + L+ +E++ A E L
Sbjct: 119 LHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 175
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 127 (49.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 49/197 (24%), Positives = 90/197 (45%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR----NK-PDHALVQMGDGFQAELAVHF 310
V V +L S+ ID KL F +G + K++R NK + V AE A+
Sbjct: 134 VFVGDLCSE-IDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDE 192
Query: 311 LKGALLFGKRLEVNFS-KHPNIT--QGADTHEYMNSN---LNRFNRNAAKNY----RYCC 360
+ GA L + + N++ + P+ +G D + +R++ + K Y
Sbjct: 193 MNGAWLGRRTIRTNWATRKPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAA 252
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
+ +++ + ++ E+EI + G I + F++ G A V FET+E A A+V
Sbjct: 253 ADNTSVYVGNIA-NLGEDEIRRAFDRFGPINEVRTFKIQG--YAFVKFETKESAARAIVQ 309
Query: 421 KHASSLGGSIIRISFSQ 437
+ + +GG I+R S+ +
Sbjct: 310 MNNADIGGQIVRCSWGK 326
Score = 43 (20.2 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 74 YVQFSSHQELTTMEQNAQGR 93
+V+FS H + T Q+ GR
Sbjct: 82 FVEFSDHNQATLALQSHNGR 101
>UNIPROTKB|H0Y8T4 [details] [associations]
symbol:MATR3 "Matrin-3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 PROSITE:PS50102 SMART:SM00355 SMART:SM00360
SMART:SM00451 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 EMBL:AC011404 HGNC:HGNC:6912
ChiTaRS:MATR3 Ensembl:ENST00000515833 Uniprot:H0Y8T4
Length = 334
Score = 126 (49.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 46/179 (25%), Positives = 87/179 (48%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 155 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 213
Query: 61 YTNVQPTIRGRNVYVQFSS-HQELTTMEQNAQGRGD---EPNRIL-LVTIHHMLYPITVE 115
YT + G+ V V S ++ + E + D E R++ L + H Y +
Sbjct: 214 YTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA- 272
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV-VARSSLQGRNIYDG-CCQLDI 172
VL ++ P+G ++ + + + QA I+ + R A+ + L+ + G C ++D+
Sbjct: 273 VL-KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 328
>UNIPROTKB|B3KM87 [details] [associations]
symbol:MATR3 "cDNA FLJ10526 fis, clone NT2RP2000931, highly
similar to Matrin-3" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR000690 InterPro:IPR003604 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50171 SMART:SM00360 SMART:SM00451
GO:GO:0005634 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC011404 UniGene:Hs.268939 UniGene:Hs.595110
HGNC:HGNC:6912 HOGENOM:HOG000015369 HOVERGEN:HBG057347
ChiTaRS:MATR3 OrthoDB:EOG4KSPJ4 EMBL:AK001388 IPI:IPI00964854
SMR:B3KM87 STRING:B3KM87 Ensembl:ENST00000502499
Ensembl:ENST00000504203 Uniprot:B3KM87
Length = 509
Score = 128 (50.1 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 56/231 (24%), Positives = 110/231 (47%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 57 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 115
Query: 61 YTNVQPTIRGRNVYVQFSS-HQELTTMEQNAQGRGD---EPNRIL-LVTIHHMLYPITVE 115
YT + G+ V V S ++ + E + D E R++ L + H Y +
Sbjct: 116 YTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA- 174
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA-----RSSL--QGR----NIY 164
VL ++ P+G ++ + + + QA I+ + R A+ + +L QGR ++
Sbjct: 175 VL-KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 231
Query: 165 DGCCQLDIQFSN--LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
+ +L ++ N +D L+ + + +RS P+++K + S +E+
Sbjct: 232 EKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGSQKTES 282
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 111 (44.1 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 48/197 (24%), Positives = 86/197 (43%)
Query: 258 VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAVHF 310
V N+NS+ DE + LF+ +G I+ L ++ D L G GF A AV
Sbjct: 223 VKNINSETTDE-QFQELFAKFGPIVSASLEKDA-DGKL--KGFGFVNYEKHEDAVKAVEA 278
Query: 311 LKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLST 370
L + L G++L V ++ N +Y L + + N + +
Sbjct: 279 LNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN----------LFVKN 328
Query: 371 LPQDVTEEEIVSHLEEHGSIVNTKLFEM-NGKKQAL--VLFETEEQATEALVCKHASSLG 427
L V +E++ +G+I + K+ NGK + V F T E+AT+A+ K+ +
Sbjct: 329 LDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVA 388
Query: 428 GSIIRISFSQLQSIREN 444
G + ++ +Q + +R +
Sbjct: 389 GKPLYVAIAQRKDVRRS 405
Score = 61 (26.5 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 39/166 (23%), Positives = 70/166 (42%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR---AKNQ---ALLQMQDVPSAINAL 58
S ++V ++ +SE L +F P G ++ + + R K A + D + A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 59 QFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLH 118
+ N P I+GR + +S Q ++ + G I + +H I + L+
Sbjct: 97 E-QLNYTP-IKGRLCRIMWS--QRDPSLRKKGSGN------IFIKNLHP---DIDNKALY 143
Query: 119 QVFSPHGFV--EKIVTFQ--KSAGFQALIQYQLRPSAVVARSSLQG 160
FS G + KI T + KS GF + ++ +A A +L G
Sbjct: 144 DTFSVFGDILSSKIATDENGKSKGF-GFVHFEEEGAAKEAIDALNG 188
>UNIPROTKB|Q8UWC5 [details] [associations]
symbol:MATR3 "Nuclear protein matrin 3" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR012677 InterPro:IPR015880 PROSITE:PS50102
PROSITE:PS50171 SMART:SM00355 SMART:SM00360 SMART:SM00451
GO:GO:0005634 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 CTD:9782 eggNOG:NOG80010 HOGENOM:HOG000015369
HOVERGEN:HBG057347 KO:K13213 GeneTree:ENSGT00650000093206
OMA:RRFPGSM OrthoDB:EOG4KSPJ4 EMBL:AADN02035974 EMBL:AADN02035973
EMBL:AB021168 IPI:IPI00589498 RefSeq:NP_989478.1 UniGene:Gga.1968
SMR:Q8UWC5 STRING:Q8UWC5 Ensembl:ENSGALT00000003907
Ensembl:ENSGALT00000041230 GeneID:373948 KEGG:gga:373948
InParanoid:Q8UWC5 NextBio:20813479 Uniprot:Q8UWC5
Length = 902
Score = 129 (50.5 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 41/178 (23%), Positives = 83/178 (46%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFG+IT ++L N+A ++M A A+++
Sbjct: 385 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGIITNHLILNKINEAFIEMSTTEDAQAAVEY 443
Query: 61 YTNVQPTIRGRNVYVQFSS-HQELTTMEQNAQGRGDEPNRILLVTIHHMLYP---ITVEV 116
Y+ + G+ V V S ++ + E + + P L IH P +
Sbjct: 444 YSTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKTEAPKPELGRVIHLSNLPHSGYSDNA 503
Query: 117 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-YDG-CCQLDI 172
+ ++ P+G ++ + + + QA I+ + R A+ + + + G C ++D+
Sbjct: 504 VLKLAEPYGKIKNYILMRMKS--QAFIEMETREDALAMVEHCANKALWFQGRCVKVDL 559
>UNIPROTKB|D6REM6 [details] [associations]
symbol:MATR3 "Matrin-3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR003604
InterPro:IPR012677 InterPro:IPR015880 PROSITE:PS50102 SMART:SM00355
SMART:SM00360 SMART:SM00451 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011404
HGNC:HGNC:6912 HOGENOM:HOG000015369 ChiTaRS:MATR3 IPI:IPI00967721
ProteinModelPortal:D6REM6 SMR:D6REM6 Ensembl:ENST00000510056
ArrayExpress:D6REM6 Bgee:D6REM6 Uniprot:D6REM6
Length = 794
Score = 128 (50.1 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 56/231 (24%), Positives = 110/231 (47%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 395 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 453
Query: 61 YTNVQPTIRGRNVYVQFSS-HQELTTMEQNAQGRGD---EPNRIL-LVTIHHMLYPITVE 115
YT + G+ V V S ++ + E + D E R++ L + H Y +
Sbjct: 454 YTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA- 512
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA-----RSSL--QGR----NIY 164
VL ++ P+G ++ + + + QA I+ + R A+ + +L QGR ++
Sbjct: 513 VL-KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 569
Query: 165 DGCCQLDIQFSN--LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
+ +L ++ N +D L+ + + +RS P+++K + S +E+
Sbjct: 570 EKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGSQKTES 620
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
Identities = 44/189 (23%), Positives = 86/189 (45%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 308
V V +L+S+ +D KL F +G++ K++R+ + G GF +AE A+
Sbjct: 137 VFVGDLSSE-VDNQKLREAFQPFGDVSDAKVIRDT--NTTKSKGYGFVSYPKREEAERAI 193
Query: 309 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 368
+ G L + + N++ Q +H S +N+ + N +++
Sbjct: 194 EQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDN--------TSVYV 245
Query: 369 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 428
+ +TE+EI G I ++F+M G A V F+ ++ A +A+V + +GG
Sbjct: 246 GNIAS-LTEDEIRQGFASFGRITEVRIFKMQG--YAFVKFDNKDAAAKAIVQMNNQDVGG 302
Query: 429 SIIRISFSQ 437
++R S+ +
Sbjct: 303 QLVRCSWGK 311
>UNIPROTKB|F1MXI4 [details] [associations]
symbol:MATR3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 PROSITE:PS50102 SMART:SM00355 SMART:SM00360
SMART:SM00451 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GeneTree:ENSGT00650000093206
EMBL:DAAA02020411 IPI:IPI00866918 UniGene:Bt.35261
Ensembl:ENSBTAT00000057156 OMA:FIEMASS Uniprot:F1MXI4
Length = 844
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 56/231 (24%), Positives = 110/231 (47%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 395 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 453
Query: 61 YTNVQPTIRGRNVYVQFSS-HQELTTMEQNAQGRGD---EPNRIL-LVTIHHMLYPITVE 115
YT + G+ V V S ++ + E + D E R++ L + H Y +
Sbjct: 454 YTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA- 512
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA-----RSSL--QGR----NIY 164
VL ++ P+G ++ + + + QA I+ + R A+ + +L QGR ++
Sbjct: 513 VL-KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 569
Query: 165 DGCCQLDIQFSN--LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
+ +L ++ N +D L+ + + +RS P+++K + S +E+
Sbjct: 570 EKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGSQKTES 620
>UNIPROTKB|P43243 [details] [associations]
symbol:MATR3 "Matrin-3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005198 "structural molecule activity"
evidence=TAS] [GO:0005637 "nuclear inner membrane" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR012677 InterPro:IPR015880
PROSITE:PS50102 PROSITE:PS50171 SMART:SM00355 SMART:SM00360
SMART:SM00451 EMBL:CH471062 GO:GO:0000166 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0005637 EMBL:AB018266 EMBL:AF117236
EMBL:AK316420 EMBL:AC011404 EMBL:BC015031 EMBL:M63483
IPI:IPI00017297 IPI:IPI00965324 RefSeq:NP_001181883.1
RefSeq:NP_001181884.1 RefSeq:NP_001181885.1 RefSeq:NP_061322.2
RefSeq:NP_954659.1 UniGene:Hs.268939 UniGene:Hs.595110
ProteinModelPortal:P43243 SMR:P43243 IntAct:P43243
MINT:MINT-4999417 STRING:P43243 PhosphoSite:P43243 DMDM:12643409
PaxDb:P43243 PRIDE:P43243 DNASU:9782 Ensembl:ENST00000361059
Ensembl:ENST00000394805 Ensembl:ENST00000503811
Ensembl:ENST00000509990 GeneID:9782 KEGG:hsa:9782 UCSC:uc003ldt.3
CTD:9782 GeneCards:GC05P138609 HGNC:HGNC:6912 HPA:CAB033552
HPA:HPA036564 HPA:HPA036565 MIM:164015 MIM:606070
neXtProt:NX_P43243 Orphanet:600 PharmGKB:PA30655 eggNOG:NOG80010
HOGENOM:HOG000015369 HOVERGEN:HBG057347 KO:K13213 PhylomeDB:P43243
ChiTaRS:MATR3 GenomeRNAi:9782 NextBio:36832 PMAP-CutDB:P43243
ArrayExpress:P43243 Bgee:P43243 CleanEx:HS_MATR3
Genevestigator:P43243 GermOnline:ENSG00000015479 Uniprot:P43243
Length = 847
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 56/231 (24%), Positives = 110/231 (47%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 395 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 453
Query: 61 YTNVQPTIRGRNVYVQFSS-HQELTTMEQNAQGRGD---EPNRIL-LVTIHHMLYPITVE 115
YT + G+ V V S ++ + E + D E R++ L + H Y +
Sbjct: 454 YTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA- 512
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA-----RSSL--QGR----NIY 164
VL ++ P+G ++ + + + QA I+ + R A+ + +L QGR ++
Sbjct: 513 VL-KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 569
Query: 165 DGCCQLDIQFSN--LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
+ +L ++ N +D L+ + + +RS P+++K + S +E+
Sbjct: 570 EKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGSQKTES 620
>UNIPROTKB|F1RGI7 [details] [associations]
symbol:MATR3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR012677 InterPro:IPR015880 PROSITE:PS50102
PROSITE:PS50171 SMART:SM00355 SMART:SM00360 SMART:SM00451
GO:GO:0005634 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 CTD:9782 KO:K13213 GeneTree:ENSGT00650000093206
OMA:RRFPGSM EMBL:FP101965 RefSeq:XP_003124025.1
RefSeq:XP_003354341.1 RefSeq:XP_003480970.1 RefSeq:XP_003480971.1
UniGene:Ssc.7542 Ensembl:ENSSSCT00000015671 GeneID:100521716
KEGG:ssc:100521716 Uniprot:F1RGI7
Length = 849
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 56/231 (24%), Positives = 110/231 (47%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 395 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 453
Query: 61 YTNVQPTIRGRNVYVQFSS-HQELTTMEQNAQGRGD---EPNRIL-LVTIHHMLYPITVE 115
YT + G+ V V S ++ + E + D E R++ L + H Y +
Sbjct: 454 YTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA- 512
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA-----RSSL--QGR----NIY 164
VL ++ P+G ++ + + + QA I+ + R A+ + +L QGR ++
Sbjct: 513 VL-KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 569
Query: 165 DGCCQLDIQFSN--LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
+ +L ++ N +D L+ + + +RS P+++K + S +E+
Sbjct: 570 EKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGSQKTES 620
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 118 (46.6 bits), Expect = 0.00011, P = 0.00011
Identities = 53/195 (27%), Positives = 85/195 (43%)
Query: 250 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-QAE 305
T DR T V V N+ D ID++KL LF YG +K++R D + G GF + E
Sbjct: 28 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 83
Query: 306 LAVHFLKGAL-LFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 364
K L L GK ++ K + + E + RF R K P
Sbjct: 84 THEAAQKAVLDLHGKSID---GKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--PPGV 138
Query: 365 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEALVCKH 422
I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A+ +
Sbjct: 139 PIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMN 198
Query: 423 ASSLGGSIIRISFSQ 437
+G + ++ Q
Sbjct: 199 GRIVGSKPLHVTLGQ 213
>UNIPROTKB|A8MXP9 [details] [associations]
symbol:MATR3 "Matrin-3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR012677 InterPro:IPR015880
PROSITE:PS50102 PROSITE:PS50171 SMART:SM00355 SMART:SM00360
SMART:SM00451 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011404 HGNC:HGNC:6912
HOGENOM:HOG000015369 HOVERGEN:HBG057347 ChiTaRS:MATR3 OMA:RRFPGSM
IPI:IPI00789551 SMR:A8MXP9 STRING:A8MXP9 Ensembl:ENST00000394800
Ensembl:ENST00000502929 UCSC:uc003ldw.3 Uniprot:A8MXP9
Length = 895
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 56/231 (24%), Positives = 110/231 (47%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 395 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 453
Query: 61 YTNVQPTIRGRNVYVQFSS-HQELTTMEQNAQGRGD---EPNRIL-LVTIHHMLYPITVE 115
YT + G+ V V S ++ + E + D E R++ L + H Y +
Sbjct: 454 YTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA- 512
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA-----RSSL--QGR----NIY 164
VL ++ P+G ++ + + + QA I+ + R A+ + +L QGR ++
Sbjct: 513 VL-KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 569
Query: 165 DGCCQLDIQFSN--LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213
+ +L ++ N +D L+ + + +RS P+++K + S +E+
Sbjct: 570 EKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGSQKTES 620
>ZFIN|ZDB-GENE-050522-496 [details] [associations]
symbol:rbm14a "RNA binding motif protein 14a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-050522-496 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00390000020883 EMBL:BX511175 EMBL:BC095368
EMBL:BC157376 IPI:IPI00487638 RefSeq:NP_001108616.1
UniGene:Dr.77963 STRING:Q503D7 Ensembl:ENSDART00000009234
Ensembl:ENSDART00000122073 GeneID:323721 KEGG:dre:323721 CTD:323721
HOGENOM:HOG000063724 HOVERGEN:HBG062132 InParanoid:Q503D7
OMA:HMERKEE OrthoDB:EOG4Q2DFQ NextBio:20808405 Uniprot:Q503D7
Length = 471
Score = 88 (36.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 27/76 (35%), Positives = 37/76 (48%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPD----HALVQMGDGFQAELAVHFL 311
V V NL + ED L++LFS YG ++ ++ KP +A V M AE A+ L
Sbjct: 85 VFVGNLCASCSVED-LYDLFSPYGKVLDCDKVKTKPSSLTGYAFVYMEHKEDAEQAIEGL 143
Query: 312 KGALLFGKRLEVNFSK 327
G G+ L V SK
Sbjct: 144 HGTTFMGRPLAVELSK 159
Score = 81 (33.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 1 MTEPSKV-IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQ 59
M + S V + V N+ E +++DL+ LF PFG + + +LR A + +Q +A +A++
Sbjct: 1 MDDSSAVKLFVGNLDLETTQDDLIALFAPFGEVVHITVLR--QFAFVHLQGEGAADSAIR 58
Query: 60 FYTNVQPTIRGRNVYVQFSSHQELTT 85
+ RGR++ V+ S + L +
Sbjct: 59 DLNGRE--YRGRSLVVEESKGRPLNS 82
>MGI|MGI:1298379 [details] [associations]
symbol:Matr3 "matrin 3" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000690 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 PROSITE:PS50102 PROSITE:PS50171 SMART:SM00355
SMART:SM00360 SMART:SM00451 MGI:MGI:1298379 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 CTD:9782 eggNOG:NOG80010 HOVERGEN:HBG057347 KO:K13213
ChiTaRS:MATR3 EMBL:AK087939 EMBL:BC029070 IPI:IPI00453826
RefSeq:NP_034901.2 UniGene:Mm.215034 PDB:1X4D PDB:1X4F PDBsum:1X4D
PDBsum:1X4F ProteinModelPortal:Q8K310 SMR:Q8K310 IntAct:Q8K310
STRING:Q8K310 PhosphoSite:Q8K310 PaxDb:Q8K310 PRIDE:Q8K310
Ensembl:ENSMUST00000166793 GeneID:17184 KEGG:mmu:17184
GeneTree:ENSGT00650000093206 InParanoid:Q8K310 OMA:RRFPGSM
OrthoDB:EOG4KSPJ4 EvolutionaryTrace:Q8K310 NextBio:291510
Bgee:Q8K310 CleanEx:MM_MATR3 Genevestigator:Q8K310
GermOnline:ENSMUSG00000037236 Uniprot:Q8K310
Length = 846
Score = 127 (49.8 bits), Expect = 0.00014, P = 0.00014
Identities = 58/234 (24%), Positives = 111/234 (47%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 395 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 453
Query: 61 YTNVQPTIRGRNVYVQFSS-HQELTTMEQNAQGRGD---EPNRIL-LVTIHHMLYPITVE 115
YT + G+ V V S ++ + E + D E R++ L + H Y +
Sbjct: 454 YTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA- 512
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA-----RSSL--QGR----NIY 164
VL ++ P+G ++ + + + QA I+ + R A+ + +L QGR ++
Sbjct: 513 VL-KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 569
Query: 165 DGCCQLDIQFSN--LDELQVNYNNERSRDFTNPNLPAEQKGRP-SQSGYSEAGG 215
+ +L ++ N +D L+ + + +RS P+++K + +Q S A G
Sbjct: 570 EKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDAQKTESPAEG 623
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 114 (45.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 41/194 (21%), Positives = 86/194 (44%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHA----LVQMGDGFQAELAVHFL 311
+ V NL+ D +DE +L +LFS +G ++ +K++R+ H+ V +A+ AV +
Sbjct: 193 IYVKNLHVD-VDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 312 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 371
G + G+ L V ++ Q + +R R N +++ L
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVN----------LYVKNL 301
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL--VLFETEEQATEALVCKHASSLGGS 429
+ +E++ +G I + K+ G + V F + E+AT+A+ + +G
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 430 IIRISFSQLQSIRE 443
+ ++ +Q + R+
Sbjct: 362 PLYVALAQRKEERK 375
Score = 56 (24.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 50/225 (22%), Positives = 96/225 (42%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR--AKNQAL----LQMQDVPSAINA 57
P ++V ++ +++E L + F P G I + + R A ++L + Q A A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 58 LQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVL 117
L N + I+G+ + + +S Q + ++ G + I ++ I + L
Sbjct: 69 LDTM-NFE-VIKGQPIRIMWS--QRDPGLRKSGVGN---------IFIKNLEDSIDNKAL 115
Query: 118 HQVFSPHGFVE--KIVTFQK-SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
+ FS G + K+V + S GF + ++ +A A S++ G + D + F
Sbjct: 116 YDTFSTFGNILSCKVVCDEHGSRGF-GFVHFETHEAAQNAISTMNGMLLNDRKVFVG-HF 173
Query: 175 SNLDELQVNYNNERSRDFTN---PNLPAEQKGRPSQSGYSEAGGM 216
+ E +V R+ +FTN NL + + Q +S+ G M
Sbjct: 174 KSRREREVELG-ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKM 217
>RGD|3052 [details] [associations]
symbol:Matr3 "matrin 3" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR012677 InterPro:IPR015880 PROSITE:PS50102 PROSITE:PS50171
SMART:SM00355 SMART:SM00360 SMART:SM00451 RGD:3052 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 CTD:9782 eggNOG:NOG80010 HOGENOM:HOG000015369
HOVERGEN:HBG057347 KO:K13213 GeneTree:ENSGT00650000093206
OrthoDB:EOG4KSPJ4 EMBL:M63485 EMBL:AB205483 IPI:IPI00555259
RefSeq:NP_062022.2 UniGene:Rn.29774 ProteinModelPortal:P43244
SMR:P43244 STRING:P43244 PhosphoSite:P43244 PRIDE:P43244
Ensembl:ENSRNOT00000026949 GeneID:29150 KEGG:rno:29150 UCSC:RGD:3052
InParanoid:P43244 NextBio:608155 Genevestigator:P43244
GermOnline:ENSRNOG00000019875 Uniprot:P43244
Length = 845
Score = 126 (49.4 bits), Expect = 0.00018, P = 0.00018
Identities = 46/179 (25%), Positives = 87/179 (48%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 395 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 453
Query: 61 YTNVQPTIRGRNVYVQFSS-HQELTTMEQNAQGRGD---EPNRIL-LVTIHHMLYPITVE 115
YT + G+ V V S ++ + E + D E R++ L + H Y +
Sbjct: 454 YTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDEKFDQKQELGRVIHLSNLPHSGYSDSA- 512
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV-VARSSLQGRNIYDG-CCQLDI 172
VL ++ P+G ++ + + + QA I+ + R A+ + L+ + G C ++D+
Sbjct: 513 VL-KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 568
>UNIPROTKB|F1PLN7 [details] [associations]
symbol:MATR3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR012677 InterPro:IPR015880 PROSITE:PS50102
PROSITE:PS50171 SMART:SM00355 SMART:SM00360 SMART:SM00451
GO:GO:0005634 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 CTD:9782 KO:K13213 GeneTree:ENSGT00650000093206
EMBL:AAEX03007822 RefSeq:NP_001192187.1 Ensembl:ENSCAFT00000002092
GeneID:474700 KEGG:cfa:474700 Uniprot:F1PLN7
Length = 849
Score = 126 (49.4 bits), Expect = 0.00018, P = 0.00018
Identities = 46/179 (25%), Positives = 87/179 (48%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 395 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 453
Query: 61 YTNVQPTIRGRNVYVQFSS-HQELTTMEQNAQGRGD---EPNRIL-LVTIHHMLYPITVE 115
YT + G+ V V S ++ + E + D E R++ L + H Y +
Sbjct: 454 YTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA- 512
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV-VARSSLQGRNIYDG-CCQLDI 172
VL ++ P+G ++ + + + QA I+ + R A+ + L+ + G C ++D+
Sbjct: 513 VL-KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 568
>UNIPROTKB|E2RL92 [details] [associations]
symbol:MATR3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR012677 InterPro:IPR015880 PROSITE:PS50102
PROSITE:PS50171 SMART:SM00355 SMART:SM00360 SMART:SM00451
GO:GO:0005634 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00650000093206 OMA:RRFPGSM
EMBL:AAEX03007822 Ensembl:ENSCAFT00000002097 Uniprot:E2RL92
Length = 864
Score = 126 (49.4 bits), Expect = 0.00018, P = 0.00018
Identities = 46/179 (25%), Positives = 87/179 (48%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 395 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 453
Query: 61 YTNVQPTIRGRNVYVQFSS-HQELTTMEQNAQGRGD---EPNRIL-LVTIHHMLYPITVE 115
YT + G+ V V S ++ + E + D E R++ L + H Y +
Sbjct: 454 YTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSA- 512
Query: 116 VLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAV-VARSSLQGRNIYDG-CCQLDI 172
VL ++ P+G ++ + + + QA I+ + R A+ + L+ + G C ++D+
Sbjct: 513 VL-KLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 568
>MGI|MGI:1920963 [details] [associations]
symbol:Rbm20 "RNA binding motif protein 20" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007507 "heart development" evidence=ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISO;IMP] InterPro:IPR000504 InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR012677 InterPro:IPR015880
PROSITE:PS50102 SMART:SM00355 SMART:SM00360 SMART:SM00451
MGI:MGI:1920963 GO:GO:0005634 GO:GO:0007507 GO:GO:0008380
GO:GO:0000166 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0033120 GeneTree:ENSGT00650000093206 CTD:282996
eggNOG:NOG145655 HOGENOM:HOG000072583 HOVERGEN:HBG108397
OMA:PNSTAVY OrthoDB:EOG4TB4CN EMBL:AC117805 EMBL:AC121510
EMBL:AC137853 EMBL:AK142175 EMBL:BC038663 IPI:IPI00462208
RefSeq:NP_001164318.1 UniGene:Mm.313695 HSSP:Q9UKA9
ProteinModelPortal:Q3UQS8 STRING:Q3UQS8 PhosphoSite:Q3UQS8
PRIDE:Q3UQS8 Ensembl:ENSMUST00000164202 GeneID:73713 KEGG:mmu:73713
UCSC:uc008hwz.2 InParanoid:Q3UQS8 NextBio:338879
Genevestigator:Q3UQS8 Uniprot:Q3UQS8
Length = 1199
Score = 117 (46.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 6 KVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+V+H+ N+ +END++ L PFG +T +++++ NQA L+M +A +Q+Y
Sbjct: 520 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQEK 579
Query: 65 QPTIRGRNVYVQFSS-HQEL 83
I G + ++ S+ ++EL
Sbjct: 580 PAIINGEKLLIRMSTRYKEL 599
Score = 56 (24.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 159 QGRNIYDGCCQLDIQF-SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS-EAGGM 216
QG + +G +L ++ + + N+ + NL AE+K S++G S E
Sbjct: 943 QGETLGNGDAELSLKLPGQVPSTSASCPNDTDLEMPGLNLDAERKPAESETGLSLEVSNC 1002
Query: 217 YAPGAR 222
Y AR
Sbjct: 1003 YEKEAR 1008
>UNIPROTKB|D6RE02 [details] [associations]
symbol:MATR3 "Matrin-3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC011404 HGNC:HGNC:6912
ChiTaRS:MATR3 IPI:IPI00964253 ProteinModelPortal:D6RE02 SMR:D6RE02
Ensembl:ENST00000512876 ArrayExpress:D6RE02 Bgee:D6RE02
Uniprot:D6RE02
Length = 125
Score = 97 (39.2 bits), Expect = 0.00036, P = 0.00035
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 3 EPSKVIHVRNV--GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
E S+V+H+ + G + LLQL +PFGVI+ ++L N+A ++M A A+ +
Sbjct: 57 ETSRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 115
Query: 61 YTNVQPTIRG 70
YT + G
Sbjct: 116 YTTTPALVFG 125
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 118 (46.6 bits), Expect = 0.00043, P = 0.00043
Identities = 52/195 (26%), Positives = 86/195 (44%)
Query: 250 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-QAE 305
T D+ T V V N D +D+DKL LFS YG +K++R D + G GF + E
Sbjct: 192 TRDKATFTNVFVKNFGDD-MDDDKLKELFSEYGPTESVKVIR---DSSGKSKGFGFVRYE 247
Query: 306 LAVHFLKGAL-LFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 364
K L L GK ++ K + + E + RF R K P
Sbjct: 248 THEAAQKAVLDLHGKSID---GKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--PPGV 302
Query: 365 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF-EMN-GKKQALVLFETEEQATEALVCKH 422
I++ L + + +E++ GSI K+ E+ GK ++ F + E+AT+A+ +
Sbjct: 303 PIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMN 362
Query: 423 ASSLGGSIIRISFSQ 437
+G ++++ Q
Sbjct: 363 GRIVGSKPLQVTLGQ 377
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 118 (46.6 bits), Expect = 0.00043, P = 0.00043
Identities = 53/195 (27%), Positives = 85/195 (43%)
Query: 250 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-QAE 305
T DR T V V N+ D ID++KL LF YG +K++R D + G GF + E
Sbjct: 192 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 247
Query: 306 LAVHFLKGAL-LFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 364
K L L GK ++ K + + E + RF R K P
Sbjct: 248 THEAAQKAVLDLHGKSID---GKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--PPGV 302
Query: 365 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEALVCKH 422
I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A+ +
Sbjct: 303 PIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMN 362
Query: 423 ASSLGGSIIRISFSQ 437
+G + ++ Q
Sbjct: 363 GRIVGSKPLHVTLGQ 377
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 119 (46.9 bits), Expect = 0.00044, P = 0.00044
Identities = 64/232 (27%), Positives = 101/232 (43%)
Query: 117 LHQVFSPHGFV--EKI---VTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLD 171
L ++FS +G V K+ +T S G Q L++Y SA+ A SL G + D L
Sbjct: 235 LSELFSAYGEVVESKLLIDITTNASRG-QGLVRYIDTQSAINAVKSLNGFILQDPEKPLI 293
Query: 172 IQFS-NLDE-------LQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARA 223
++F+ N DE LQ + R P +Q+ + Q + +G M P +
Sbjct: 294 VRFADNEDEKKQKRQKLQQKQVRQNMRFSPYPQQQQQQQQQQQQM-MNSSGAMMYPFYQN 352
Query: 224 VAFPQMXXXXXXXXXFGGGLPPGITGTN---DRCTVLVSNLNSDRIDEDKLFNLFSLYGN 280
+ P M PPG G N D + V NL SD D+ L+ LFS G
Sbjct: 353 M--PTMNSLPNSMIGSSSQPPPG--GKNPGTDPTNLYVYNLPSDA-DDSLLYRLFSPCGA 407
Query: 281 IIRIKLLRNKPD-----HALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327
I +K++R++ + V+M + A++ + G + GK + V+F K
Sbjct: 408 IASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINSINGVQVGGKTISVSFKK 459
>UNIPROTKB|D6RBK5 [details] [associations]
symbol:MATR3 "Matrin-3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC011404 HGNC:HGNC:6912
ChiTaRS:MATR3 IPI:IPI00966417 ProteinModelPortal:D6RBK5 SMR:D6RBK5
Ensembl:ENST00000511249 ArrayExpress:D6RBK5 Bgee:D6RBK5
Uniprot:D6RBK5
Length = 121
Score = 96 (38.9 bits), Expect = 0.00045, P = 0.00045
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 22 LLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81
LLQL +PFGVI+ ++L N+A ++M A A+ +YT + G+ V V S Q
Sbjct: 13 LLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS--Q 70
Query: 82 ELTTMEQNAQGRGDE 96
+ +++ +G+ D+
Sbjct: 71 KYKRIKK-PEGKPDQ 84
>SGD|S000001448 [details] [associations]
symbol:MSL1 "U2B component of U2 snRNP" species:4932
"Saccharomyces cerevisiae" [GO:0005686 "U2 snRNP" evidence=TAS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;ISS;IMP;IPI] [GO:0030620 "U2 snRNA
binding" evidence=IPI] [GO:0071004 "U2-type prespliceosome"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360 SGD:S000001448
GO:GO:0000166 EMBL:BK006942 Gene3D:3.30.70.330 EMBL:X79743
GO:GO:0000398 GO:GO:0005686 GO:GO:0071004 EMBL:Z37996 EMBL:AY558237
PIR:S48353 RefSeq:NP_012274.1 ProteinModelPortal:P40567 SMR:P40567
DIP:DIP-816N IntAct:P40567 MINT:MINT-572508 STRING:P40567
PaxDb:P40567 EnsemblFungi:YIR009W GeneID:854826 KEGG:sce:YIR009W
CYGD:YIR009w eggNOG:NOG317159 GeneTree:ENSGT00390000007046
HOGENOM:HOG000000973 OrthoDB:EOG4TB7MM NextBio:977683
Genevestigator:P40567 GermOnline:YIR009W GO:GO:0030620
PANTHER:PTHR10501 Uniprot:P40567
Length = 111
Score = 96 (38.9 bits), Expect = 0.00045, P = 0.00045
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 250 TNDRCTVLVSNLNSDRIDEDKL----FNLFSLYGNIIRIKL-LRNKPDHALVQMGDGFQA 304
T + T+ VS LN ++I+ +L F LF+ +G ++++ + + + A + M QA
Sbjct: 24 TEAKNTLYVSQLN-EKINMQRLRVNLFLLFATFGEVLKVSMNFKKQRGQAFITMRTIDQA 82
Query: 305 ELAVHFLKGALLFGKRLEVNFSK 327
LA L G FGK L+V FSK
Sbjct: 83 SLAQISLNGERFFGKPLKVEFSK 105
>UNIPROTKB|D3ZZG7 [details] [associations]
symbol:Rbm20 "RNA-binding protein 20" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR015880 PROSITE:PS50102 SMART:SM00355 SMART:SM00360
RGD:1307427 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 OrthoDB:EOG4TB4CN IPI:IPI00778571
Ensembl:ENSRNOT00000054684 ArrayExpress:D3ZZG7 Uniprot:D3ZZG7
Length = 1094
Score = 117 (46.2 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 6 KVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+V+H+ N+ +END++ L PFG +T +++++ NQA L+M +A +Q+Y
Sbjct: 482 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQEK 541
Query: 65 QPTIRGRNVYVQFSS-HQEL 83
I G + ++ S+ ++EL
Sbjct: 542 PALINGEKLLIRMSTRYKEL 561
Score = 53 (23.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 159 QGRNIYDGCCQLDIQF-SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS-EAGGM 216
QG + +G +L + + + N+ + NL AE+K S++G S E
Sbjct: 906 QGETLGNGDAELSPKLPGQVPSTSTSCPNDTDMEMAGLNLDAERKPAESETGLSPEVSNC 965
Query: 217 YAPGAR 222
Y AR
Sbjct: 966 YEKEAR 971
>RGD|1307427 [details] [associations]
symbol:Rbm20 "RNA binding motif protein 20" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007507 "heart development" evidence=ISO;IMP] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISO;IMP]
InterPro:IPR000504 InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR012677 InterPro:IPR015880 PROSITE:PS50102
PROSITE:PS50171 SMART:SM00355 SMART:SM00360 SMART:SM00451
RGD:1307427 GO:GO:0005634 GO:GO:0007507 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0033120 GeneTree:ENSGT00650000093206 CTD:282996
eggNOG:NOG145655 HOGENOM:HOG000072583 EMBL:EU562301 IPI:IPI00782698
RefSeq:NP_001101081.2 UniGene:Rn.21596 Ensembl:ENSRNOT00000054685
GeneID:309544 KEGG:rno:309544 UCSC:RGD:1307427 NextBio:660952
ArrayExpress:E9PT37 Genevestigator:C1IEE3 Uniprot:E9PT37
Length = 1207
Score = 117 (46.2 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 6 KVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+V+H+ N+ +END++ L PFG +T +++++ NQA L+M +A +Q+Y
Sbjct: 521 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQEK 580
Query: 65 QPTIRGRNVYVQFSS-HQEL 83
I G + ++ S+ ++EL
Sbjct: 581 PALINGEKLLIRMSTRYKEL 600
Score = 53 (23.7 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 159 QGRNIYDGCCQLDIQF-SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS-EAGGM 216
QG + +G +L + + + N+ + NL AE+K S++G S E
Sbjct: 951 QGETLGNGDAELSPKLPGQVPSTSTSCPNDTDMEMAGLNLDAERKPAESETGLSPEVSNC 1010
Query: 217 YAPGAR 222
Y AR
Sbjct: 1011 YEKEAR 1016
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 113 (44.8 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 42/194 (21%), Positives = 85/194 (43%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHA----LVQMGDGFQAELAVHFL 311
+ V NL+ D +DE L +LFS +G ++ +K++R+ H+ V +A+ AV +
Sbjct: 193 IYVKNLHVD-VDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 312 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 371
G + G+ L V ++ Q + +R R N +++ L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVN----------LYVKNL 301
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL--VLFETEEQATEALVCKHASSLGGS 429
+ +E++ +G I + K+ G + V F + E+AT+A+ + LG
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTK 361
Query: 430 IIRISFSQLQSIRE 443
+ ++ +Q + R+
Sbjct: 362 PLYVALAQRKEERK 375
Score = 50 (22.7 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 49/225 (21%), Positives = 94/225 (41%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR--AKNQAL----LQMQDVPSAINA 57
P ++V ++ +++E L + F P G I + + R A ++L + Q A A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 58 LQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVL 117
L N + I+G+ + + +S Q + ++ G + I ++ I + L
Sbjct: 69 LDTM-NFE-VIKGQPIRIMWS--QRDPGLRKSGVGN---------IFIKNLEDSIDNKAL 115
Query: 118 HQVFSPHGFVE--KIVTFQK-SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174
+ FS G + K+V S GF + ++ +A A +++ G + D + F
Sbjct: 116 YDTFSTFGNILSCKVVCDDHGSRGF-GFVHFETHEAAQQAITTMNGMLLNDRKVFVG-HF 173
Query: 175 SNLDELQVNYNNERSRDFTN---PNLPAEQKGRPSQSGYSEAGGM 216
+ E +V R+ +FTN NL + + Q +S G M
Sbjct: 174 KSRREREVELG-ARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKM 217
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 115 (45.5 bits), Expect = 0.00091, P = 0.00091
Identities = 52/195 (26%), Positives = 86/195 (44%)
Query: 250 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-QAE 305
T DR T V V N D ID++KL LFS YG +K++R+ + G GF + E
Sbjct: 192 TRDRATFTNVFVKNFGDD-IDDEKLKKLFSEYGPTESVKVIRDATGKS---KGFGFVRYE 247
Query: 306 LAVHFLKGAL-LFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTK 364
K L L GK ++ K + + E + RF R K+ P
Sbjct: 248 THEAAQKAVLELHGKSID---GKVLCVGRAQKKIERLAELRRRFERLKLKDKTR--PPGV 302
Query: 365 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEALVCKH 422
I++ L + + +E++ GSI K + E+ GK +V F + E+A++A+ +
Sbjct: 303 PIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQGKGFGVVCFSSFEEASKAVNEMN 362
Query: 423 ASSLGGSIIRISFSQ 437
+G + ++ Q
Sbjct: 363 GRVVGSKTLHVTLGQ 377
>UNIPROTKB|J3KSW7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3KSW7 Ensembl:ENST00000585096 Uniprot:J3KSW7
Length = 73
Score = 93 (37.8 bits), Expect = 0.00096, P = 0.00096
Identities = 29/72 (40%), Positives = 37/72 (51%)
Query: 240 GGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNI--IRIKLLRNKPDHALVQ 297
GGG+ G G ND C + V NL D +D + ++F YG I I +K R P A V+
Sbjct: 3 GGGVIRGPAGNND-CRIYVGNLPPDIRTKD-IEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 298 MGDGFQAELAVH 309
D AE AVH
Sbjct: 61 FEDPRDAEDAVH 72
>TAIR|locus:2058203 [details] [associations]
symbol:FPA species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=IMP] [GO:0000785 "chromatin"
evidence=IDA] [GO:0009553 "embryo sac development" evidence=IGI]
[GO:0009790 "embryo development" evidence=IGI] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0006378 "mRNA
polyadenylation" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 GO:GO:0009790 GO:GO:0009911
GO:GO:0031048 GO:GO:0010228 GO:GO:0009908 GO:GO:0009553
EMBL:AC002335 InterPro:IPR012921 Pfam:PF07744 HSSP:Q9V535
EMBL:AY849993 EMBL:AY094463 EMBL:BT003029 EMBL:AK317032
EMBL:AK318833 IPI:IPI00545884 IPI:IPI00852356 IPI:IPI00955350
RefSeq:NP_001078046.1 RefSeq:NP_001078047.1 RefSeq:NP_001078048.1
RefSeq:NP_181869.2 UniGene:At.12188 UniGene:At.36898
ProteinModelPortal:Q8LPQ9 SMR:Q8LPQ9 IntAct:Q8LPQ9 STRING:Q8LPQ9
PaxDb:Q8LPQ9 PRIDE:Q8LPQ9 EnsemblPlants:AT2G43410.2
EnsemblPlants:AT2G43410.3 EnsemblPlants:AT2G43410.4 GeneID:818942
KEGG:ath:AT2G43410 TAIR:At2g43410 eggNOG:NOG250829
HOGENOM:HOG000015139 InParanoid:A8MQX1 OMA:TSAYIDF PhylomeDB:Q8LPQ9
ProtClustDB:CLSN2697851 Genevestigator:Q8LPQ9 PROSITE:PS50917
Uniprot:Q8LPQ9
Length = 901
Score = 88 (36.0 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 40/165 (24%), Positives = 77/165 (46%)
Query: 266 IDEDKLFNLFSLYGNIIRIKLLRNKPDHAL--VQMGDGFQAELAVHFLKGALLFGKRLEV 323
+ +D L FS +G I + LR + + +M D QA+ + G + G L V
Sbjct: 106 VSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQAKS----MNGKPMGGSFLRV 161
Query: 324 NF--SKHPNITQGADTHEYMNSNLNRFNR--NAAKNYRYCCSPTKMIHLSTLPQ--DVTE 377
+F S+ P Q A +++ N N+N + ++ ++++ P+K++ + P +
Sbjct: 162 DFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCND 221
Query: 378 EEIVSH-LEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK 421
E+I+ + + G I K + + ALV F + E+A + CK
Sbjct: 222 EQILHNAMILFGEIERVKSYP--SRNFALVEFRSAEEARQ---CK 261
Score = 79 (32.9 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 109 LYPITVEV-LHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGC 167
L P T E L ++F +G +++I + S GF A I Y+ AV A+ +LQG N+ +G
Sbjct: 25 LTPETTESDLTELFGRYGDIDRITVYS-SRGF-AFIYYRHVEEAVAAKEALQGANL-NGS 81
Query: 168 CQLDIQFS 175
Q+ I+++
Sbjct: 82 -QIKIEYA 88
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 446 437 0.00088 118 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 116
No. of states in DFA: 599 (64 KB)
Total size of DFA: 242 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.06u 0.14s 36.20t Elapsed: 00:00:02
Total cpu time: 36.09u 0.14s 36.23t Elapsed: 00:00:02
Start: Fri May 10 07:17:28 2013 End: Fri May 10 07:17:30 2013
WARNINGS ISSUED: 1