BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013267
(446 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis
thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/441 (84%), Positives = 409/441 (92%), Gaps = 9/441 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQF 60
M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SA++ALQF
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 61 YTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120
+TNVQPTIRGRNVYVQFSSHQELTT+EQN GR DEPNRILLVTIHHMLYPITV+VLHQV
Sbjct: 61 FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120
Query: 121 FSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180
FSP+GFVEK+VTFQKSAGFQALIQYQ++ A AR++LQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180
Query: 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFG 240
QVNYNN+RSRD+TNPNLPAEQKGR S Y + G VA+PQMAN +AIAAAFG
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTG---------VAYPQMANTSAIAAAFG 231
Query: 241 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGD 300
GGLPPGITGTNDRCTVLVSNLN+D IDEDKLFNLFSLYGNI+RIKLLRNKPDHALVQMGD
Sbjct: 232 GGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGD 291
Query: 301 GFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCC 360
GFQAELAVHFLKGA+LFGKRLEVNFSKHPNIT G D+H+Y+NSNLNRFNRNAAKNYRYCC
Sbjct: 292 GFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYCC 351
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC 420
SPTKMIHLSTLPQDVTEEE+++H++EHG++VNTK+FEMNGKKQALV FE EE+A EALVC
Sbjct: 352 SPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVC 411
Query: 421 KHASSLGGSIIRISFSQLQSI 441
KHA+SLGGSIIRISFSQLQ+I
Sbjct: 412 KHATSLGGSIIRISFSQLQTI 432
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 177/496 (35%), Positives = 269/496 (54%), Gaps = 63/496 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 27 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 86
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 87 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATSNEGTLL 146
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 147 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 206
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 207 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 265
Query: 210 YSEAGGMYAPG------ARAVAFPQMA--NAAAIAAAFG----------GGLP-PGITGT 250
+ G M +P A A+AFPQ A + +A+ A G G + PG +G
Sbjct: 266 FGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTSSAVSGRMAIPGASGI 325
Query: 251 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 310
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA++A++
Sbjct: 326 PGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNH 385
Query: 311 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 362
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 386 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 444
Query: 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 422
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 445 SATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 504
Query: 423 ASSLG-GSIIRISFSQ 437
LG +R+SFS+
Sbjct: 505 NHDLGENHHLRVSFSK 520
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 340 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 399
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 10 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLK 63
Query: 400 GKKQALVLFETEEQA 414
GK QA + +EE A
Sbjct: 64 GKSQAFLEMASEEAA 78
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 178/496 (35%), Positives = 268/496 (54%), Gaps = 63/496 (12%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 27 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYT 86
Query: 63 NVQPTIRGRNVYVQFSSHQELTT-------------------MEQNAQGRGDEPNR---- 99
V P +R + VY+Q+S+H+EL T N G N
Sbjct: 87 PVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLL 146
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 147 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYA 206
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS +
Sbjct: 207 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 265
Query: 210 YSEAGGMYAPG------ARAVAFPQMA--NAAAIAAAFG----------GGLP-PGITGT 250
+ G M +P A A+AFPQ A + A+ A G G + PG +G
Sbjct: 266 FGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASGM 325
Query: 251 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHF 310
+LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++
Sbjct: 326 PGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNH 385
Query: 311 LKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSP 362
L G L+GK L SKH + QG T ++ NS L+RF + +KN++ P
Sbjct: 386 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQNIFPP 444
Query: 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 422
+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H
Sbjct: 445 SATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 504
Query: 423 ASSLG-GSIIRISFSQ 437
LG +R+SFS+
Sbjct: 505 NHDLGENHHLRVSFSK 520
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 340 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 399
Y N N N+ K R CSP++++HL +P DVTE E++S G + N L +
Sbjct: 10 YANGNDNK----KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN--LLMLK 63
Query: 400 GKKQALVLFETEEQA 414
GK QA + +EE A
Sbjct: 64 GKSQAFLEMASEEAA 78
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 177/476 (37%), Positives = 268/476 (56%), Gaps = 46/476 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMA 294
Query: 212 EAGGMYAPGAR-AVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 270
A G+ P A+A + +AAA AAA G PG+ G + +LVSNLN +R+
Sbjct: 295 AAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQS 353
Query: 271 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 330
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH N
Sbjct: 354 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 413
Query: 331 I--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 382
+ QG T +Y NS L+RF + +KN++ P+ +HLS +P V+EE++
Sbjct: 414 VQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKV 472
Query: 383 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 437
+G +V F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 473 LFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 349 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 404
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 405 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 445
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 278/477 (58%), Gaps = 48/477 (10%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP-------------- 97
V P +R + +Y+Q+S+H+EL T+ Q AQ + P
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 98 -NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARS 156
+ +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A+
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGYS 211
+L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ + ++
Sbjct: 237 ALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFA 295
Query: 212 EAGGMYA-PGARA-VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDED 269
+ + A PGA + +A P A AAA AAA G+P G N +LVSNLN + +
Sbjct: 296 KETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVTPQ 353
Query: 270 KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SKH
Sbjct: 354 SLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQ 413
Query: 330 NIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 382
+ +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++ +
Sbjct: 414 TVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRT 473
Query: 383 HLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 437
G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 474 LFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 414
+P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 56 APSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/479 (36%), Positives = 277/479 (57%), Gaps = 52/479 (10%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ +
Sbjct: 235 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAA 293
Query: 210 YSEAGGMYA-PGARA-VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRID 267
+++ + A PGA + +A P A AAA AAA G+P G N +LVSNLN + +
Sbjct: 294 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVT 351
Query: 268 EDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SK
Sbjct: 352 PQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSK 411
Query: 328 HPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEI 380
H + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 412 HQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDL 471
Query: 381 VSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 437
+ G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 472 RTLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 300 DGFQAELAVHFLKGA--LLFGKRLEV---NFSKHPNITQGADTHEYMNSNLNRFNRNAAK 354
DG E+AV +G+ LL G L N S G D+ ++ +
Sbjct: 2 DGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGED---------- 51
Query: 355 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 414
+ +P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 52 --KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/479 (36%), Positives = 277/479 (57%), Gaps = 52/479 (10%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116
Query: 64 VQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRG 94
V P +R + +Y+Q+S+H+EL TT+ ++A
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 176
Query: 95 DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 177 QSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQA 234
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSG 209
+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P+ +
Sbjct: 235 KLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAA 293
Query: 210 YSEAGGMYA-PGARA-VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRID 267
+++ + A PGA + +A P A AAA AAA G+P G N +LVSNLN + +
Sbjct: 294 FAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVT 351
Query: 268 EDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327
LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK + V SK
Sbjct: 352 PQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSK 411
Query: 328 HPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEI 380
H + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++
Sbjct: 412 HQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDL 471
Query: 381 VSHLEEHGSIVNT-KLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 437
+ G V K F+ K AL+ T E+A +AL+ H +LG + +R+SFS+
Sbjct: 472 RTLFANTGGTVKAFKFFQ--DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 300 DGFQAELAVHFLKGA--LLFGKRLEV---NFSKHPNITQGADTHEYMNSNLNRFNRNAAK 354
DG E+AV +G+ LL G L N S G D+ ++ +
Sbjct: 2 DGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGED---------- 51
Query: 355 NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 414
+ +P++++H+ LP +VTE E+++ G + N + + GK QA + TEE A
Sbjct: 52 --KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTN--ILMLKGKNQAFLELATEEAA 107
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 175/503 (34%), Positives = 267/503 (53%), Gaps = 74/503 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS----- 206
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +PS
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDN-QPSLDQTM 293
Query: 207 QSGYSEAGGMYAPGARAVAFP---QMANAAAIAAA-FGGGLPP----------------- 245
+ + G M A FP + AA ++ G L P
Sbjct: 294 AAAFGAPGIMSASPYAGAGFPPTFAIPQAATVSVPNVHGALAPLAIPSAAARAAAAGRIA 353
Query: 246 --GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 303
G+ G + +LVSNLN +R+ LF LF +Y ++ R+K+L NK ++ALVQM DG Q
Sbjct: 354 IPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENALVQMADGSQ 412
Query: 304 AELAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKN 355
A+LA+ L G L GK + + SKH N+ QG T +Y NS L+RF + +KN
Sbjct: 413 AQLAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKN 471
Query: 356 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 415
++ P+ +HLS +P ++EE++ +G IV F +K AL+ + E+A
Sbjct: 472 FQNIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAI 531
Query: 416 EALVCKHASSLG-GSIIRISFSQ 437
+AL+ H LG +R+SFS+
Sbjct: 532 QALIDLHNHDLGENHHLRVSFSK 554
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 349 NRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQA 404
N N +K + R P+++IH+ LP DVTE E++S G + N L + GK QA
Sbjct: 40 NGNDSKKFKGDNRSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTN--LLMLKGKNQA 97
Query: 405 LVLFETEEQATEALVCKHAS---SLGGSIIRISFSQLQSIRENS 445
+ TEE A +V + S L G I I FS + ++ +S
Sbjct: 98 FIEMNTEE-AANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 268/476 (56%), Gaps = 46/476 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTS 116
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 177 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 234
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +
Sbjct: 235 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMA 294
Query: 212 EAGGMYAPGAR-AVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDK 270
A G+ P A+A + +AAA AAA G PG+ G + +LVSNLN +R+
Sbjct: 295 AAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQS 353
Query: 271 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 330
LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK + + SKH +
Sbjct: 354 LFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQS 413
Query: 331 I--------TQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVS 382
+ QG T +Y NS L+RF + +KN++ P+ +HLS +P ++E+++
Sbjct: 414 VQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDLKI 472
Query: 383 HLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 437
+G IV F +K AL+ + E+A +AL+ H LG +R+SFS+
Sbjct: 473 LFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 300 DGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 359
DG ++AV +G+ + + P I G ++ +F ++ R
Sbjct: 2 DGIVPDIAVGTKRGS---DELFSACVTNGPFIMSGTSASTANGNDSKKFKGDS----RSA 54
Query: 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 419
P+++IH+ LP DVTE E++S G + N L + GK QA + TEE A +V
Sbjct: 55 GVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTN--LLMLKGKNQAFIEMHTEE-AANTMV 111
Query: 420 CKHAS---SLGGSIIRISFSQLQSIRENS 445
+ S L G I I FS + ++ +S
Sbjct: 112 NYYTSVTPVLRGQPIYIQFSNHKELKTDS 140
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 278 bits (710), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 175/501 (34%), Positives = 268/501 (53%), Gaps = 73/501 (14%)
Query: 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62
PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT
Sbjct: 56 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 115
Query: 63 NVQPTIRGRNVYVQFSSHQELTT------------------MEQNAQGRGDEPNR----- 99
+ P +R + VY+Q+S+H+EL T ++ + P+
Sbjct: 116 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 175
Query: 100 -----ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVA 154
+L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY +A A
Sbjct: 176 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 235
Query: 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------- 206
+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS
Sbjct: 236 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAA 294
Query: 207 -------QSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLP--------------P 245
S Y+ A G +AP A+ FPQ A ++ A G P P
Sbjct: 295 FGAPGIISSPYAGAAG-FAP---AIGFPQ-ATGLSVPAVPGALGPLTITSSAVTGRMAIP 349
Query: 246 GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAE 305
G +G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+
Sbjct: 350 GASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQ 409
Query: 306 LAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYR 357
LA++ L G L+GK L SKH + QG T ++ NS L+RF + +KN++
Sbjct: 410 LAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL-TKDFSNSPLHRFKKPGSKNFQ 468
Query: 358 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 417
P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +A
Sbjct: 469 NIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQA 528
Query: 418 LVCKHASSLG-GSIIRISFSQ 437
L+ H LG +R+SFS+
Sbjct: 529 LIELHNHDLGENHHLRVSFSK 549
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 349 NRNAAKNY---RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 405
N N +K + R CSP++++HL +P DVTE EI+S G + N L + GK QA
Sbjct: 41 NGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLMLKGKSQAF 98
Query: 406 VLFETEEQA 414
+ +EE A
Sbjct: 99 LEMASEEAA 107
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 179/501 (35%), Positives = 272/501 (54%), Gaps = 71/501 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTT--------------------------------MEQNAQ 91
V P +RG+ +Y+QFS+H+EL T ++
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 92 GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP------------A 199
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP A
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMA 293
Query: 200 EQKGRP---SQSGYSEA--GGMYAPGARAVAFPQMANA---------AAIAAAFGGGLPP 245
G P S S Y+ A + P ++ P + A AA AAA G P
Sbjct: 294 AAFGAPGIMSASPYAGAVPSHLCHPSRAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIP 353
Query: 246 GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAE 305
G+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALV+M DG QA+
Sbjct: 354 GLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQ 412
Query: 306 LAVHFLKGALLFGKRLEVNFSKHPNI--------TQGADTHEYMNSNLNRFNRNAAKNYR 357
LA+ L G L GK + + SKH ++ QG T +Y +S L+RF + +KN++
Sbjct: 413 LAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGL-TKDYGSSPLHRFKKPGSKNFQ 471
Query: 358 YCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 417
P+ +HLS +P V+E+++ S +G +V F +K AL+ + E+A +A
Sbjct: 472 NIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQA 531
Query: 418 LVCKHASSLG-GSIIRISFSQ 437
L+ H LG +R+SFS+
Sbjct: 532 LIELHNHDLGENHHLRVSFSK 552
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 341 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 396
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 397 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 445
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1
PE=1 SV=2
Length = 527
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 168/473 (35%), Positives = 256/473 (54%), Gaps = 43/473 (9%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63
PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115
Query: 64 VQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------ 93
V P +RG+ +Y+QFS+H+EL T Q R
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLALAASAAAVDAGMA 175
Query: 94 --GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 151
G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY SA
Sbjct: 176 MAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 233
Query: 152 VVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYS 211
A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ +
Sbjct: 234 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMA 293
Query: 212 EAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKL 271
A G+ P P +AA AAA PG+ G + +LVSNLN +R+ L
Sbjct: 294 AAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGN-SVLLVSNLNPERVTPQSL 352
Query: 272 FNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA--VHFLKGALLFGKRLEVNFSKHP 329
F LF +YG++ R+K+L NK ++ALVQM DG QA+L + A V S+
Sbjct: 353 FILFGVYGDVQRVKILFNKKENALVQMADGSQAQLGEPPERAQAAREVSAHYTVQASECA 412
Query: 330 NITQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE 385
+G + T +Y +S L RF + +KN++ P+ +HLS +P V+E+++ S
Sbjct: 413 AAREGQEDQGLTKDYGSSPL-RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFS 471
Query: 386 EHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQ 437
+G +V F +K AL+ + E+A +AL+ H LG + +R+SFS+
Sbjct: 472 SNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 524
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 341 MNSNLNRFNRNAAKNY----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 396
M+S+ + N N +K + R P+++IH+ LP DVTE E++S G + N L
Sbjct: 31 MSSSASAANGNDSKKFKGDNRSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTN--LL 88
Query: 397 EMNGKKQALVLFETEEQATEAL--VCKHASSLGGSIIRISFSQLQSIRENS 445
+ GK QA + TEE A + A L G I I FS + ++ +S
Sbjct: 89 MLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 229/455 (50%), Gaps = 57/455 (12%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 183
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 184 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 238
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 239 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 297
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGGM------YAPGA 221
V N+ S D+T P L +G+ Q GY G + Y G+
Sbjct: 298 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGS 357
Query: 222 R----AVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277
R VA+P A ++ GG P G V+VS L+ +++ ++FNLF L
Sbjct: 358 RDTPELVAYPL---PQASSSYMHGGSPSG-------SVVMVSGLHQLKMNCSRVFNLFCL 407
Query: 278 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT----- 332
YGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 408 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIF 467
Query: 333 ---QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 388
G ++ ++ S NRF + P+ ++H +P VTEE +H
Sbjct: 468 ELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHE 527
Query: 389 SI--VNTKLFEMNGKKQ---ALVLFETEEQATEAL 418
+ + K+F+ + L+ ++ + A EAL
Sbjct: 528 VLPFIKYKVFDAKASAKTLSGLLEWKCKTDAVEAL 562
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEAL 418
S + ++H+ L + V E ++V LE+ G+I + M K+QALV FE + A E +
Sbjct: 122 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM--MPFKRQALVEFENIDSAKECV 177
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 198 bits (503), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 139/456 (30%), Positives = 226/456 (49%), Gaps = 57/456 (12%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 65 QPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVF 121
I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V
Sbjct: 135 PVYIAGQQAFFNYSTSKRITR-----PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVC 189
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+++ G QA+++++ A A+++L G +IY GCC L I+++ L
Sbjct: 190 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQ--------------SGYSEAGGM------YAPGA 221
V N+ S D+T P L +G+ Q GY G + Y G+
Sbjct: 249 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 308
Query: 222 RA----VAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277
R VA+P A ++ GG P G V+VS L+ +++ ++FNLF L
Sbjct: 309 RDTPELVAYPL---PQASSSYMHGGNPSG-------SVVMVSGLHQLKMNCSRVFNLFCL 358
Query: 278 YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT----- 332
YGNI ++K ++ P ALV+MGD + E AV L LFGKRL V SK ++
Sbjct: 359 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIF 418
Query: 333 ---QGADTH-EYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 388
G ++ ++ S NRF + P+ ++H +P VTEE +H
Sbjct: 419 ELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHE 478
Query: 389 SIVNTKLFEMNGKKQA-----LVLFETEEQATEALV 419
+ K + K A L+ +E + A EAL
Sbjct: 479 VLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALT 514
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALV 419
S + ++H+ L + V E ++V LE+ G+I + M K+QALV FE + A E +
Sbjct: 73 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM--MPFKRQALVEFENIDSAKECVT 129
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL
PE=1 SV=2
Length = 589
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 137/479 (28%), Positives = 227/479 (47%), Gaps = 79/479 (16%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 98 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 157
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 158 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 215
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 216 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 274
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGG 241
V N++ + D+TNPNL SG + G P R P + + A G
Sbjct: 275 VFKNDQDTWDYTNPNL----------SGQGDPGS--NPNKRQRQPPLLGDHPAEYGGPHG 322
Query: 242 GL------------PPGITGTN-----------------------------------DRC 254
G PP G D
Sbjct: 323 GYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSP 382
Query: 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGA 314
++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L
Sbjct: 383 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNN 442
Query: 315 LLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPT 363
+FG++L V SK P I G ++ S NRF+ AAKN P+
Sbjct: 443 FMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPS 500
Query: 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 418
++H P +VTEE +E G + + +GK + L+ +E++ A E L
Sbjct: 501 NVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 559
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl
PE=1 SV=2
Length = 586
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 136/479 (28%), Positives = 227/479 (47%), Gaps = 79/479 (16%)
Query: 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY 61
T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ +
Sbjct: 95 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYA 154
Query: 62 TNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121
+ Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ +
Sbjct: 155 ADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTIC 212
Query: 122 SPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181
+P G V++IV F+K+ G QA++++ SA A++SL G +IY GCC L I+++ L
Sbjct: 213 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLN 271
Query: 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGG 241
V N++ + D+TNPNL SG + G P R P + + A G
Sbjct: 272 VFKNDQDTWDYTNPNL----------SGQGDPGS--NPNKRQRQPPLLGDHPAEYGGPHG 319
Query: 242 GL------------PPGITGTN-----------------------------------DRC 254
G PP G D
Sbjct: 320 GYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSP 379
Query: 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGA 314
++V L+ +++ D++FN+F LYGN+ ++K +++KP A+V+M DG+ + A+ L
Sbjct: 380 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNN 439
Query: 315 LLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFN--RNAAKNYRYCCSPT 363
+FG+++ V SK P I G ++ S NRF+ AAKN P+
Sbjct: 440 FMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKN--RIQHPS 497
Query: 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ----ALVLFETEEQATEAL 418
++H P +VTEE +E G T + +GK + L+ ++++ A E L
Sbjct: 498 NVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 556
>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis
thaliana GN=PTB PE=2 SV=1
Length = 399
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 176/351 (50%), Gaps = 63/351 (17%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E E +L+ L + FG I TK + +NQA ++ D+ AI+ + +Y
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
++ +P IRG+ VY+Q+S+ E+ N Q GD P +LLVT + + ++++V+H
Sbjct: 75 ASSSEPAQIRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLLVTFEGVESHEVSIDVIH 130
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNI-------YDGCCQLD 171
VFS GFV KI TF+K+AGFQAL+Q+ +A ARS+L GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLR 190
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMAN 231
+ +S +L + + + RSRD+TNP LP Q
Sbjct: 191 MSYSAHTDLNIKFQSHRSRDYTNPYLPVNQ------------------------------ 220
Query: 232 AAAIAAAFGGGLPPGITGTNDRCTV-------LVSNLNSDRIDEDKLFNLFSLYGNIIRI 284
A G + P + + L+ N+ + D L +FS YG + +I
Sbjct: 221 -----TAMDGSMQPALGADGKKVESQSNVLLGLIENMQY-AVTVDVLHTVFSAYGTVQKI 274
Query: 285 KLL-RNKPDHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNI 331
+ +N AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 275 AIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDL 325
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 55/256 (21%)
Query: 15 HEISENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRN 72
HE+S + + +F FG + K+ A QAL+Q DV +A A + + GR+
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAA-------RSALDGRS 174
Query: 73 V--------------YVQFSSHQELTTMEQNAQGRG------------------------ 94
+ + +S+H +L Q+ + R
Sbjct: 175 IPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGAD 234
Query: 95 ----DEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150
+ + +LL I +M Y +TV+VLH VFS +G V+KI F+K+ QALIQY P+
Sbjct: 235 GKKVESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPT 294
Query: 151 AVVARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP--AEQKGRPSQ 207
A +A+ +L+G IYD G C+L + +S +L V +++SRD+T P+L QKG P+
Sbjct: 295 AAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKG-PAV 353
Query: 208 SGYSEAGGMYAPGARA 223
SG + G P A++
Sbjct: 354 SGSAPPAGWQNPQAQS 369
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 356 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 415
+RY +P+K++HL LP + EEE++ + G IVNTK + QA V F QA
Sbjct: 9 FRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAI 68
Query: 416 EALVCKHASS-----LGGSIIRISFSQLQSIREN 444
++V +ASS + G + I +S I N
Sbjct: 69 -SMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNN 101
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 180/347 (51%), Gaps = 53/347 (15%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ +D+ AI + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYY 75
Query: 62 -TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH-HMLYPITVEVLH 118
++ +P +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVVGNVLLVTIEGDDARMVSIDVLH 131
Query: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD-------GCCQLD 171
VFS GFV KI TF+K+AG+QAL+Q+ +A A+ +L GR+I G C L
Sbjct: 132 LVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLK 191
Query: 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMAN 231
I +S +L V + + RSRD+TNP LP AP A + +
Sbjct: 192 ITYSAHTDLTVKFQSHRSRDYTNPYLPV------------------APSA-------IDS 226
Query: 232 AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDR--IDEDKLFNLFSLYGNIIRIKLL-R 288
+A G VL++++ + + + D L +F+ +G + +I + +
Sbjct: 227 TGQVAVGVDG------KKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDK 280
Query: 289 NKPDHALVQMGDGFQAELAVHFLKGALLFGK---RLEVNFSKHPNIT 332
N AL+Q D A +A L+G ++ +L + +S+H +++
Sbjct: 281 NGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLS 327
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 106/212 (50%), Gaps = 39/212 (18%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAINA-LQFYTNVQP------TIRG 70
D+L L F FG + K+ A QAL+Q D +A A L P T+
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQ 187
Query: 71 RNVYVQFSSHQELTTMEQN---------------------------AQGRGDEP-NRILL 102
++ + +S+H +LT Q+ G+ EP + +LL
Sbjct: 188 CSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLL 247
Query: 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162
+I +M Y +T++VLH VF+ G V+KI F K+ G QALIQY +AVVA+ +L+G
Sbjct: 248 ASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHC 307
Query: 163 IYDGC-CQLDIQFSNLDELQVNYNNERSRDFT 193
IYDG C+L I +S +L + NN+RSRD+T
Sbjct: 308 IYDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 339
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 356 YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQAT 415
+RY P+K++HL LP + TEEE++ + G++VNTK + QA + FE QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69
Query: 416 EALVCKHASS-----LGGSIIRISFSQLQSIREN 444
+ ++ +ASS + G + + +S Q I N
Sbjct: 70 Q-MISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
>sp|P23241|ELAV_DROVI Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1
Length = 519
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 55/210 (26%)
Query: 241 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK---------- 290
GG G G+ + T L+ N + ED++ +LFS G I +KL+R+K
Sbjct: 171 GGAQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNP 230
Query: 291 --PDHALVQMGDGF-------QAELAVHFLKGALLFGKRLEVNFSK-HPNITQGADTHEY 340
P +G GF AE AV+ L G L K ++V+F++ + +GA+
Sbjct: 231 QAPSKGQ-SLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGAN---- 285
Query: 341 MNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG 400
+++S LP+ +T++E+ + G+I+ +++ + G
Sbjct: 286 -------------------------LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAG 320
Query: 401 -----KKQALVLFETEEQATEALVCKHASS 425
K + F+ E+AT A++ + ++
Sbjct: 321 NDTQTKGVGFIRFDKREEATRAIIALNGTT 350
>sp|P16914|ELAV_DROME Protein elav OS=Drosophila melanogaster GN=elav PE=2 SV=1
Length = 483
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 55/211 (26%)
Query: 240 GGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--------- 290
G G G G+ + T L+ N + ED++ +LFS G I +KL+R+K
Sbjct: 134 GSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLN 193
Query: 291 ---PDHALVQMGDGF-------QAELAVHFLKGALLFGKRLEVNFSK-HPNITQGADTHE 339
P +G GF AE AV+ L G L K ++V+F++ + +GA+
Sbjct: 194 PQAPSKGQ-SLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGAN--- 249
Query: 340 YMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN 399
+++S LP+ +T++E+ + G+I+ +++ +
Sbjct: 250 --------------------------LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNA 283
Query: 400 G-----KKQALVLFETEEQATEALVCKHASS 425
G K + F+ E+AT A++ + ++
Sbjct: 284 GNDTQTKGVGFIRFDKREEATRAIIALNGTT 314
>sp|Q3UQS8|RBM20_MOUSE RNA-binding protein 20 OS=Mus musculus GN=Rbm20 PE=1 SV=3
Length = 1199
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 6 KVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+V+H+ N+ +END++ L PFG +T +++++ NQA L+M +A +Q+Y
Sbjct: 520 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQEK 579
Query: 65 QPTIRGRNVYVQFSS-HQEL 83
I G + ++ S+ ++EL
Sbjct: 580 PAIINGEKLLIRMSTRYKEL 599
>sp|Q5T481|RBM20_HUMAN RNA-binding protein 20 OS=Homo sapiens GN=RBM20 PE=1 SV=3
Length = 1227
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 6 KVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+V+H+ N+ +END++ L PFG +T +++++ NQA L+M +A +Q+Y
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQEK 577
Query: 65 QPTIRGRNVYVQFS 78
I G + ++ S
Sbjct: 578 SAVINGEKLLIRMS 591
>sp|E9PT37|RBM20_RAT RNA-binding protein 20 OS=Rattus norvegicus GN=Rbm20 PE=2 SV=1
Length = 1207
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 6 KVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+V+H+ N+ +END++ L PFG +T +++++ NQA L+M +A +Q+Y
Sbjct: 521 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQEK 580
Query: 65 QPTIRGRNVYVQFSS-HQEL 83
I G + ++ S+ ++EL
Sbjct: 581 PALINGEKLLIRMSTRYKEL 600
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 246 GITGTND--RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQ 303
G+T ND TV V L++ + +D L N+FS YG I+ +K+ K VQ +
Sbjct: 251 GVTTDNDPNNTTVFVGGLDAS-VTDDHLKNVFSQYGEIVHVKIPAGK-RCGFVQFSEKSC 308
Query: 304 AELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEY 340
AE A+ L G L G + +++ + P+ Q D ++
Sbjct: 309 AEEALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPSQF 345
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 366 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS 425
+ + L VT++ + + ++G IV+ K+ GK+ V F + A EAL +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKI--PAGKRCGFVQFSEKSCAEEALRMLNGVQ 320
Query: 426 LGGSIIRISFSQLQSIREN 444
LGG+ +R+S+ + S +++
Sbjct: 321 LGGTTVRLSWGRSPSNKQS 339
>sp|P43244|MATR3_RAT Matrin-3 OS=Rattus norvegicus GN=Matr3 PE=1 SV=2
Length = 845
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 26/165 (15%)
Query: 3 EPSKVIHV------RNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAIN 56
E S+V+H+ +N+ ++ LLQL +PFGVI+ ++L N+A ++M A
Sbjct: 395 ETSRVVHIMDFQRGKNLRYQ-----LLQLVEPFGVISNHLILNKINEAFIEMATTEDAQA 449
Query: 57 ALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP-------NRIL-LVTIHHM 108
A+ +YT + G+ V V S Q+ +++ +G+ DE R++ L + H
Sbjct: 450 AVDYYTTTPALVFGKPVRVHLS--QKYKRIKK-PEGKPDEKFDQKQELGRVIHLSNLPHS 506
Query: 109 LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
Y + + ++ P+G ++ + + + QA I+ + R A+
Sbjct: 507 GY--SDSAVLKLAEPYGKIKNYILMRMKS--QAFIEMETREDAMA 547
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 6 KVIHVRNVGHE-ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+VIH+ N+ H S++ +L+L +P+G I +++R K+QA ++M+ A+ +
Sbjct: 496 RVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKK 555
Query: 65 QPTIRGRNVYVQFS 78
+GR V V S
Sbjct: 556 ALWFQGRCVKVDLS 569
>sp|Q8K310|MATR3_MOUSE Matrin-3 OS=Mus musculus GN=Matr3 PE=1 SV=1
Length = 846
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 3 EPSKVIHV------RNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAIN 56
E S+V+H+ +N+ ++ LLQL +PFGVI+ ++L N+A ++M A
Sbjct: 395 ETSRVVHIMDFQRGKNLRYQ-----LLQLVEPFGVISNHLILNKINEAFIEMATTEDAQA 449
Query: 57 ALQFYTNVQPTIRGRNVYVQFS-SHQELTTMEQNAQGRGDEPNR----ILLVTIHHMLYP 111
A+ +YT + G+ V V S ++ + E + D+ I L + H Y
Sbjct: 450 AVDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGY- 508
Query: 112 ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
+ + ++ P+G ++ + + + QA I+ + R A+
Sbjct: 509 -SDSAVLKLAEPYGKIKNYILMRMKS--QAFIEMETREDAMA 547
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 6 KVIHVRNVGHE-ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64
+VIH+ N+ H S++ +L+L +P+G I +++R K+QA ++M+ A+ +
Sbjct: 496 RVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKK 555
Query: 65 QPTIRGRNVYVQFS 78
+GR V V S
Sbjct: 556 ALWFQGRCVKVDLS 569
>sp|P43243|MATR3_HUMAN Matrin-3 OS=Homo sapiens GN=MATR3 PE=1 SV=2
Length = 847
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 3 EPSKVIHV------RNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAIN 56
E S+V+H+ +N+ ++ LLQL +PFGVI+ ++L N+A ++M A
Sbjct: 395 ETSRVVHIMDFQRGKNLRYQ-----LLQLVEPFGVISNHLILNKINEAFIEMATTEDAQA 449
Query: 57 ALQFYTNVQPTIRGRNVYVQFS-SHQELTTMEQNAQGRGDEPNR----ILLVTIHHMLYP 111
A+ +YT + G+ V V S ++ + E + D+ I L + H Y
Sbjct: 450 AVDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGY- 508
Query: 112 ITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVV 153
+ + ++ P+G ++ + + + QA I+ + R A+
Sbjct: 509 -SDSAVLKLAEPYGKIKNYILMRMKS--QAFIEMETREDAMA 547
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 85/194 (43%), Gaps = 17/194 (8%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHA----LVQMGDGFQAELAVHFL 311
V + N D +D+ +L +FS +GN + +K++ + + V G+ +A+ AV +
Sbjct: 193 VYIKNFGED-MDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 312 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 371
G + G+ + V ++ QG ++ R NR N +++ L
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN----------LYVKNL 301
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 429
+ ++ + +G+I +TK+ G + V F + E+AT+A+ + +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTK 361
Query: 430 IIRISFSQLQSIRE 443
+ ++ +Q + R+
Sbjct: 362 PLYVALAQRKEERK 375
>sp|Q9SJG8|AML2_ARATH Protein MEI2-like 2 OS=Arabidopsis thaliana GN=ML2 PE=2 SV=2
Length = 843
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKL-VMLRAKNQALLQMQDVPSAINALQFYT 62
PS+ + VRN+ + +++L LF+PFG I L +++ ++ D+ +A A++
Sbjct: 196 PSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQ 255
Query: 63 NVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFS 122
N +R R + + FS +E + + QG + I ++ ++ + L Q+F
Sbjct: 256 NT--LLRKRTLDIHFSIPKENPSEKDMNQG---------TLVIFNVDTTVSNDELLQLFG 304
Query: 123 PHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDI 172
+G + +I + F I+Y A A +L I C +L++
Sbjct: 305 AYGEIREIRE-TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 311
++ T+++ N+++ + D+L LF YG I I+ N+ H ++ D AE A+ L
Sbjct: 281 NQGTLVIFNVDT-TVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKAL 339
Query: 312 KGALLFGKRLEVNFSK 327
+ + GK +++ S+
Sbjct: 340 NRSEIGGKCIKLELSR 355
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana
GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 271 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327
L LFS YG + + + R D+A V+ GD A+ A H+L G G R+ V FS+
Sbjct: 27 LERLFSRYGRVRDVDMKR---DYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 80
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/194 (19%), Positives = 84/194 (43%), Gaps = 17/194 (8%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHA----LVQMGDGFQAELAVHFL 311
V + N D +D+ +L +FS +GN + +K++ + + V G+ +A+ AV +
Sbjct: 193 VYIKNFGED-MDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 312 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 371
G + G+ + V ++ QG ++ R NR N +++ L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN----------LYVKNL 301
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 429
+ ++ + +G+I + K+ G + V F + E+AT+A+ + +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTK 361
Query: 430 IIRISFSQLQSIRE 443
+ ++ +Q + R+
Sbjct: 362 PLYVALAQRKEERK 375
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRI--KLLRNKPDHALVQMGDGFQAELAVHFLK 312
TV V NL D I E ++ +LFS YG +++I K+ P +A V+ D AE A+H
Sbjct: 8 TVYVGNLPGD-IREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 313 GALLFGKRLEVNFS 326
G G RL V +
Sbjct: 67 GYDFDGHRLRVELA 80
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 24/199 (12%)
Query: 254 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAEL 306
+ V N+NS+ DE + LF+ +G I+ L ++ D L G GF A
Sbjct: 219 TNLYVKNINSETTDE-QFQELFAKFGPIVSASLEKDA-DGKL--KGFGFVNYEKHEDAVK 274
Query: 307 AVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMI 366
AV L + L G++L V ++ N +Y L + + N +
Sbjct: 275 AVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN----------L 324
Query: 367 HLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM-NGKKQAL--VLFETEEQATEALVCKHA 423
+ L V +E++ +G+I + K+ NGK + V F T E+AT+A+ K+
Sbjct: 325 FVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQ 384
Query: 424 SSLGGSIIRISFSQLQSIR 442
+ G + ++ +Q + +R
Sbjct: 385 QIVAGKPLYVAIAQRKDVR 403
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFL 311
+ + NL+ D ID L++ FS++G+I+ K+ ++ V + A+ A+ L
Sbjct: 128 IFIKNLHPD-IDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 312 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 371
G LL G+ + Y+ +L+R R++ + +++ +
Sbjct: 187 NGMLLNGQEI------------------YVAPHLSRKERDS--QLEETKAHYTNLYVKNI 226
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKL-FEMNGKKQ--ALVLFETEEQATEALVCKHASSLGG 428
+ T+E+ + G IV+ L + +GK + V +E E A +A+ + S L G
Sbjct: 227 NSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNG 286
Query: 429 SIIRISFSQLQSIR 442
+ + +Q ++ R
Sbjct: 287 EKLYVGRAQKKNER 300
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHA----LVQMGDGFQAELAVHFL 311
+ V NL D +DE L +LFS +G ++ +K++R+ H+ V +A+ AV +
Sbjct: 193 IYVKNLPVD-VDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 312 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTL 371
G + G+ L ++ Q + +R R N +++ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN----------LYVKNL 301
Query: 372 PQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 429
+ ++++ +G I + K+ G + V F + E+AT+A+ + +G
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 430 IIRISFSQLQSIRE 443
+ ++ +Q + R+
Sbjct: 362 PLYVALAQRKEERK 375
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 41/202 (20%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 308
+ + NL D ID L++ FS +GNI+ K+ + +H G GF A+ A+
Sbjct: 101 IFIKNLE-DSIDNKALYDTFSTFGNILSCKVACD--EHG--SRGFGFVHFETHEAAQQAI 155
Query: 309 HFLKGALLFGKRLEVNFSKHPNITQ---GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKM 365
+ + G LL +++ V K + GA E+ N
Sbjct: 156 NTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN----------------------- 192
Query: 366 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ---ALVLFETEEQATEALVCKH 422
I++ LP DV E+ + + G +++ K+ N V FE E+A +A+V +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 423 ASSLGGSIIRISFSQLQSIREN 444
+ G ++ +Q + R+N
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQN 274
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 36/200 (18%)
Query: 250 TNDRCTVLVSNLN-SDRIDEDKLFNLFSLYGNIIRIK-LLRNKPD---HALVQMGDGFQA 304
+ D TV VSNL S E KL LF + G +++I+ + N+ D + V+ G+ A
Sbjct: 700 SKDSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSA 759
Query: 305 ----ELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCC 360
EL ++G +F V+ SK+P+ K +RY
Sbjct: 760 QQALELDRKIVEGRPMFVSPC-VDKSKNPDF----------------------KVFRYST 796
Query: 361 SPTK-MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQAL--VLFETEEQATE 416
+ K + +S LP T+EE+ + HG++ + +L GK + L V +E E QA++
Sbjct: 797 TLEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQ 856
Query: 417 ALVCKHASSLGGSIIRISFS 436
A++ ++ ++I+++ S
Sbjct: 857 AVMKMDGMTIRENVIKVAIS 876
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 36/224 (16%)
Query: 228 QMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL 287
Q+++ + G PP + + V NL D +D +KL +F G + +++
Sbjct: 35 QVSDEGGVEGGQGFSEPP------EEAKLFVGNLPYD-VDSEKLAGIFDAAGVVEIAEVI 87
Query: 288 RNKPDH-----ALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMN 342
N+ V M +AE AV L G + G++L VN + + A ++
Sbjct: 88 YNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDF-- 145
Query: 343 SNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF--EMNG 400
P+ +++ LP DV + EHG +V+ ++ G
Sbjct: 146 ------------------EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETG 187
Query: 401 KKQ--ALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 442
+ + V +E + +A+ +L G +R++ ++ + R
Sbjct: 188 RSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 247 ITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAEL 306
+ G + V V NL + + +L FS YG + + + RN P A V+ D AE
Sbjct: 33 LWGGDSETKVYVGNLGTG-AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAED 91
Query: 307 AVHFLKGALLFGKRLEVNFS 326
AV L G ++ G R+ V S
Sbjct: 92 AVRGLDGKVICGSRVRVELS 111
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINAL 58
++I V+N H + +L +LF PFG I +L+M + A++Q +DVP+A A
Sbjct: 487 DRIILVKNFPHGTTREELAELFLPFGKIERLLMPPSGTIAIIQYRDVPAARGAF 540
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 83/197 (42%), Gaps = 23/197 (11%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF-------QAELAV 308
V + N + +D++ L LFS +G + +K++R D G GF A AV
Sbjct: 193 VYIKNFGEE-VDDESLKELFSQFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAV 248
Query: 309 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHL 368
+ G + GK + V ++ Q ++ R +R N +++
Sbjct: 249 EEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN----------LYI 298
Query: 369 STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ--ALVLFETEEQATEALVCKHASSL 426
L + +E++ GSI + K+ +G+ + V F + E+AT+A+ + +
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 427 GGSIIRISFSQLQSIRE 443
G + ++ +Q + R+
Sbjct: 359 GSKPLYVALAQRKEERK 375
>sp|Q1LZD9|PSPC1_BOVIN Paraspeckle component 1 OS=Bos taurus GN=PSPC1 PE=2 SV=1
Length = 520
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 213 AGGMYAPGARAVAFPQMANAAAIAA-----AFGGG--------LPPGITGTNDRCTVLVS 259
A G P A A+A P A A A GG L PG RC + V
Sbjct: 25 AAGEGDPAALALALPGEPPVPAAPAGEDRPADEGGFTIDIKSFLKPGEKTYTQRCRLFVG 84
Query: 260 NLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK 319
NL +D I ED LF YG + + R++ +++ AE+A L G +L +
Sbjct: 85 NLPTD-ITEDDFKRLFERYGEPSEVFINRDR-GFGFIRLESRTLAEIAKAELDGTILKSR 142
Query: 320 RLEVNFSKH 328
L + F+ H
Sbjct: 143 PLRIRFATH 151
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7 PE=2
SV=1
Length = 235
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 315
V V NL + + +L FS YG + + + RN P A V+ D AE AV L G +
Sbjct: 13 VYVGNLGTG-AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71
Query: 316 LFGKRLEVNFS 326
+ G R+ V S
Sbjct: 72 ICGSRVRVELS 82
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL---RNKPDHALVQMGDGFQAELAVHFLK 312
+ + NL+ ID LF LFS +GNI+ K++ +A V A A+ +
Sbjct: 108 IFIKNLDKS-IDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 313 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 372
G L +++ V K P E + + +R N + + +
Sbjct: 167 GVRLNNRQVYVGRFKFP---------EERAAEVRTRDRATFTN----------VFVKNIG 207
Query: 373 QDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 429
D+ +E++ E+G + K+ + +GK + V +ET E A +A++ H S+ G
Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 430 IIRISFSQ 437
++ + +Q
Sbjct: 268 VLYVGRAQ 275
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 250 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF---- 302
T DR T V V N+ D ID++KL LF YG +K++R D + G GF
Sbjct: 192 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 247
Query: 303 ---QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 359
A+ AV L G + GK L V ++ + L +R
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--------- 298
Query: 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEA 417
P I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A
Sbjct: 299 -PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357
Query: 418 LVCKHASSLGGSIIRISFSQLQ 439
+ + +G + ++ Q +
Sbjct: 358 VDEMNGRIVGSKPLHVTLGQAR 379
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL---RNKPDHALVQMGDGFQAELAVHFLK 312
+ + NL+ ID LF LFS +GNI+ K++ +A V A A+ +
Sbjct: 108 IFIKNLDKS-IDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 313 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 372
G L +++ V K P E + + +R N + + +
Sbjct: 167 GVRLNNRQVYVGRFKFP---------EERAAEVRTRDRATFTN----------VFVKNIG 207
Query: 373 QDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 429
D+ +E++ E+G + K+ + +GK + V +ET E A +A++ H S+ G
Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 430 IIRISFSQ 437
++ + +Q
Sbjct: 268 VLYVGRAQ 275
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 250 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF---- 302
T DR T V V N+ D ID++KL LF YG +K++R D + G GF
Sbjct: 192 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 247
Query: 303 ---QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 359
A+ AV L G + GK L V ++ + L +R
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--------- 298
Query: 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEA 417
P I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A
Sbjct: 299 -PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357
Query: 418 LVCKHASSLGGSIIRISFSQLQ 439
+ + +G + ++ Q +
Sbjct: 358 VDEMNGRIVGSKPLHVTLGQAR 379
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL---RNKPDHALVQMGDGFQAELAVHFLK 312
+ + NL+ ID LF LFS +GNI+ K++ +A V A A+ +
Sbjct: 108 IFIKNLDKS-IDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 313 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 372
G L +++ V K P E + + +R N + + +
Sbjct: 167 GVRLNNRQVYVGRFKFP---------EERAAEVRTRDRATFTN----------VFVKNIG 207
Query: 373 QDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 429
D+ +E++ E+G + K+ + +GK + V +ET E A +A++ H S+ G
Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 430 IIRISFSQ 437
++ + +Q
Sbjct: 268 VLYVGRAQ 275
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 250 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF---- 302
T DR T V V N+ D ID++KL LF YG +K++R D + G GF
Sbjct: 192 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 247
Query: 303 ---QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 359
A+ AV L G + GK L V ++ + L +R
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--------- 298
Query: 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEA 417
P I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A
Sbjct: 299 -PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357
Query: 418 LVCKHASSLGGSIIRISFSQLQ 439
+ + +G + ++ Q +
Sbjct: 358 VDEMNGRIVGSKPLHVTLGQAR 379
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL---RNKPDHALVQMGDGFQAELAVHFLK 312
+ + NL+ ID LF LFS +GNI+ K++ +A V A A+ +
Sbjct: 108 IFIKNLDKS-IDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 313 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 372
G L +++ V K P E + + +R N + + +
Sbjct: 167 GVRLNNRQVYVGRFKFP---------EERAAEVRTRDRATFTN----------VFVKNIG 207
Query: 373 QDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 429
D+ +E++ E+G + K+ + +GK + V +ET E A +A++ H S+ G
Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 430 IIRISFSQ 437
++ + +Q
Sbjct: 268 VLYVGRAQ 275
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 250 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF---- 302
T DR T V V N+ D ID++KL LF YG +K++R D + G GF
Sbjct: 192 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 247
Query: 303 ---QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 359
A+ AV L G + GK L V ++ + L +R
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--------- 298
Query: 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEA 417
P I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A
Sbjct: 299 -PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357
Query: 418 LVCKHASSLGGSIIRISFSQLQ 439
+ + +G + ++ Q +
Sbjct: 358 VDEMNGRIVGSKPLHVTLGQAR 379
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL---RNKPDHALVQMGDGFQAELAVHFLK 312
+ + NL+ ID LF LFS +GNI+ K++ +A V A A+ +
Sbjct: 108 IFIKNLDKS-IDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 313 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 372
G L +++ V K P E + + +R N + + +
Sbjct: 167 GVRLNNRQVYVGRFKFP---------EERAAEVRTRDRATFTN----------VFVKNIG 207
Query: 373 QDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQ--ALVLFETEEQATEALVCKHASSLGGS 429
D+ +E++ E+G + K+ + +GK + V +ET E A +A++ H S+ G
Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 430 IIRISFSQ 437
++ + +Q
Sbjct: 268 VLYVGRAQ 275
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 250 TNDRCT---VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGF---- 302
T DR T V V N+ D ID++KL LF YG +K++R D + G GF
Sbjct: 192 TRDRATFTNVFVKNIGDD-IDDEKLKELFCEYGPTESVKVIR---DASGKSKGFGFVRYE 247
Query: 303 ---QAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYC 359
A+ AV L G + GK L V ++ + L +R
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSR--------- 298
Query: 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMN-GKKQALVLFETEEQATEA 417
P I++ L + + +E++ GSI K + E+ GK +V F + E+AT+A
Sbjct: 299 -PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357
Query: 418 LVCKHASSLGGSIIRISFSQLQ 439
+ + +G + ++ Q +
Sbjct: 358 VDEMNGRIVGSKPLHVTLGQAR 379
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 37/188 (19%)
Query: 255 TVLVSNLNSDRIDEDKLFNLFSLYGNI--IRIKLLRNKPDHALVQMGDGFQAELAVHFLK 312
T+ + NL D L N+F +G I I IK + P +A +Q D A+ +
Sbjct: 439 TLFIGNLEKTTTYHD-LRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMD 497
Query: 313 GALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 372
G L RL++ F K PT + L L
Sbjct: 498 GEYLGNNRLKLGFGK--------------------------------SMPTNCVWLDGLS 525
Query: 373 QDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIR 432
+V+++ + H +G +V + G ALVL+ E A A+ +GG+ I+
Sbjct: 526 SNVSDQYLTRHFCRYGPVVKVVFDRLKG--MALVLYNEIEYAQAAVKETKGRKIGGNKIK 583
Query: 433 ISFSQLQS 440
+ F+ +S
Sbjct: 584 VDFANRES 591
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLF 408
T+ + + LP++V EE+I+ H + +G + + K+ G + + F
Sbjct: 5 TRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAF 50
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 315
V V NL + + +L FS YG + + + RN P A V+ D AE AV L G +
Sbjct: 13 VYVGNLGTG-AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71
Query: 316 LFGKRLEVNFS 326
+ G R+ V S
Sbjct: 72 ICGSRVRVELS 82
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 251 NDRCTVLVSNL---NSDRIDEDKLFNLFSLYGNIIRIKLL-RNKPDHALVQMGDGFQAEL 306
N + V NL +SD +D LF+ + +G + +K++ +N +ALV E
Sbjct: 551 NRPLAIRVRNLPARSSDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEK 610
Query: 307 AVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMI 366
A+ FG ++EV QG D + N F A+ Y T+ +
Sbjct: 611 ALEVSHDKHFFGCKIEVE------PYQGYDVED------NEFRPYEAELDEYHPKSTRTL 658
Query: 367 HLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLF 408
+ L +D+T E+ SH E G I+ E++ KKQ L +
Sbjct: 659 FIGNLEKDITAGELRSHFEAFGEII-----EIDIKKQGLNAY 695
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 235 IAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHA 294
I FG +P TN C V + ++ +++ E L + F+ +G + ++ + RN+ A
Sbjct: 723 IKLGFGKSMP-----TN--C-VWIDGVD-EKVSESFLQSQFTRFGAVTKVSIDRNR-QLA 772
Query: 295 LVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326
LV A+ AV ++G +L K+L+V+F+
Sbjct: 773 LVLYDQVQNAQAAVKDMRGTILRRKKLQVDFA 804
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 37/215 (17%)
Query: 236 AAAFGGGLPPGI-TGTNDRCTVLVSNLNSDRIDED-KLFNLFSLYGNIIRIK-LLRNKPD 292
AA+ +P + + D TV VSNL + D KL LF G +++I+ + N+ D
Sbjct: 685 AASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGD 744
Query: 293 ---HALVQMGD---GFQA-ELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNL 345
+ V+ + QA E+ ++G +F V+ SK+P+
Sbjct: 745 FRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC-VDKSKNPDF-------------- 789
Query: 346 NRFNRNAAKNYRYCCSPTK-MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF-EMNGKKQ 403
K +RY S K + +S LP T+EE+ + HG++ + +L GK +
Sbjct: 790 --------KVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPK 841
Query: 404 AL--VLFETEEQATEALVCKHASSLGGSIIRISFS 436
L V +E E QA++A++ ++ +II+++ S
Sbjct: 842 GLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 876
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,811,806
Number of Sequences: 539616
Number of extensions: 6702862
Number of successful extensions: 19059
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 18543
Number of HSP's gapped (non-prelim): 652
length of query: 446
length of database: 191,569,459
effective HSP length: 121
effective length of query: 325
effective length of database: 126,275,923
effective search space: 41039674975
effective search space used: 41039674975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)