Query 013267
Match_columns 446
No_of_seqs 162 out of 2761
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 02:06:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.5E-67 1.6E-71 513.6 51.1 434 4-440 1-481 (481)
2 KOG1190 Polypyrimidine tract-b 100.0 2.2E-63 4.7E-68 439.7 31.1 432 1-439 24-491 (492)
3 TIGR01628 PABP-1234 polyadenyl 100.0 2.4E-53 5.2E-58 429.1 36.9 345 7-442 2-367 (562)
4 KOG1456 Heterogeneous nuclear 100.0 3.1E-48 6.6E-53 339.6 38.6 434 2-441 28-493 (494)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.6E-42 5.6E-47 330.2 35.0 310 4-330 2-350 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.6E-41 1.2E-45 321.0 31.9 268 101-441 4-351 (352)
7 KOG0123 Polyadenylate-binding 100.0 8.7E-41 1.9E-45 311.7 25.9 337 7-442 3-352 (369)
8 KOG0145 RNA-binding protein EL 100.0 4E-40 8.6E-45 275.3 24.6 297 4-329 40-358 (360)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7E-39 1.5E-43 315.4 33.5 277 102-441 4-353 (481)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 1.4E-38 3E-43 309.8 29.0 291 6-391 59-369 (578)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 7.3E-38 1.6E-42 304.8 29.9 278 50-442 18-310 (578)
12 KOG0117 Heterogeneous nuclear 100.0 8.8E-37 1.9E-41 274.2 27.8 287 44-445 37-337 (506)
13 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-36 2.8E-41 307.3 28.6 247 102-442 2-264 (562)
14 KOG0145 RNA-binding protein EL 100.0 2.2E-36 4.8E-41 252.9 23.0 263 103-439 44-358 (360)
15 KOG0117 Heterogeneous nuclear 100.0 1.3E-36 2.9E-41 273.0 22.7 237 6-331 84-333 (506)
16 TIGR01622 SF-CC1 splicing fact 100.0 3.6E-35 7.9E-40 290.3 31.1 316 4-329 88-448 (457)
17 KOG0127 Nucleolar protein fibr 100.0 2.7E-35 5.9E-40 270.5 26.1 405 6-421 6-516 (678)
18 TIGR01645 half-pint poly-U bin 100.0 6E-34 1.3E-38 277.6 31.8 167 4-177 106-283 (612)
19 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.7E-34 8E-39 287.2 31.1 294 98-440 173-503 (509)
20 TIGR01622 SF-CC1 splicing fact 100.0 1.5E-33 3.2E-38 278.9 32.0 279 100-440 89-449 (457)
21 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.5E-34 7.6E-39 287.4 27.8 280 2-328 172-501 (509)
22 KOG0148 Apoptosis-promoting RN 100.0 1.7E-34 3.6E-39 243.3 18.5 231 4-331 5-240 (321)
23 KOG0144 RNA-binding protein CU 100.0 1.8E-33 3.9E-38 251.7 20.7 163 5-181 34-209 (510)
24 KOG0110 RNA-binding protein (R 100.0 4.1E-33 8.8E-38 264.7 21.1 368 5-440 227-694 (725)
25 KOG0144 RNA-binding protein CU 100.0 2.5E-33 5.4E-38 250.8 17.0 273 98-440 32-505 (510)
26 KOG0148 Apoptosis-promoting RN 100.0 8.4E-33 1.8E-37 233.1 19.1 171 255-440 64-239 (321)
27 KOG0127 Nucleolar protein fibr 100.0 7E-31 1.5E-35 241.6 25.8 291 101-438 6-377 (678)
28 TIGR01659 sex-lethal sex-letha 100.0 5.4E-29 1.2E-33 231.6 23.9 164 249-441 103-277 (346)
29 KOG0123 Polyadenylate-binding 100.0 4.9E-29 1.1E-33 232.9 22.4 237 103-441 4-248 (369)
30 TIGR01659 sex-lethal sex-letha 100.0 3.8E-28 8.2E-33 226.0 18.7 158 4-177 106-274 (346)
31 TIGR01645 half-pint poly-U bin 100.0 2E-27 4.4E-32 232.1 21.0 170 252-439 106-284 (612)
32 KOG0110 RNA-binding protein (R 99.9 1E-26 2.3E-31 221.3 17.6 262 4-331 384-695 (725)
33 KOG4212 RNA-binding protein hn 99.9 7.5E-26 1.6E-30 203.0 21.0 234 4-325 43-290 (608)
34 KOG1190 Polypyrimidine tract-b 99.9 3.5E-25 7.6E-30 197.4 23.4 283 7-329 152-491 (492)
35 KOG0124 Polypyrimidine tract-b 99.9 8.4E-26 1.8E-30 198.3 18.4 160 7-173 115-285 (544)
36 KOG0147 Transcriptional coacti 99.9 8.4E-26 1.8E-30 209.5 12.3 315 6-329 180-528 (549)
37 KOG0124 Polypyrimidine tract-b 99.9 4.5E-24 9.7E-29 187.5 22.2 273 101-435 114-531 (544)
38 KOG0109 RNA-binding protein LA 99.9 1.4E-24 3.1E-29 185.3 11.2 147 255-439 4-150 (346)
39 KOG0131 Splicing factor 3b, su 99.9 3.4E-24 7.3E-29 170.9 11.9 162 254-443 10-181 (203)
40 KOG0147 Transcriptional coacti 99.9 1.9E-23 4.1E-28 194.0 16.8 276 103-439 182-528 (549)
41 KOG1456 Heterogeneous nuclear 99.9 1.4E-21 3.1E-26 172.4 25.6 278 100-442 31-366 (494)
42 KOG0146 RNA-binding protein ET 99.9 1.9E-22 4.1E-27 170.2 8.5 81 249-330 281-366 (371)
43 KOG0146 RNA-binding protein ET 99.9 6.8E-22 1.5E-26 166.9 9.9 188 252-440 18-366 (371)
44 KOG0131 Splicing factor 3b, su 99.9 2.2E-21 4.7E-26 154.9 10.3 155 5-176 9-175 (203)
45 KOG4206 Spliceosomal protein s 99.9 2.7E-20 5.9E-25 155.1 16.7 187 250-438 6-221 (221)
46 KOG4211 Splicing factor hnRNP- 99.8 2.5E-18 5.3E-23 158.1 28.5 400 4-420 9-491 (510)
47 KOG0109 RNA-binding protein LA 99.8 9.9E-21 2.1E-25 162.0 10.8 145 7-176 4-148 (346)
48 KOG4206 Spliceosomal protein s 99.8 4.1E-18 8.8E-23 142.2 18.1 202 102-327 11-220 (221)
49 KOG0120 Splicing factor U2AF, 99.8 2.4E-18 5.3E-23 162.6 15.0 276 2-328 172-491 (500)
50 KOG0120 Splicing factor U2AF, 99.8 1.1E-17 2.4E-22 158.1 15.8 282 98-437 173-490 (500)
51 KOG0105 Alternative splicing f 99.7 2.1E-16 4.6E-21 126.5 15.3 158 3-165 4-177 (241)
52 KOG0105 Alternative splicing f 99.7 4.3E-16 9.4E-21 124.8 16.7 166 252-427 5-176 (241)
53 KOG1457 RNA binding protein (c 99.7 3.4E-16 7.3E-21 129.2 16.3 217 97-316 31-273 (284)
54 KOG1457 RNA binding protein (c 99.7 1.3E-15 2.9E-20 125.8 15.5 174 253-427 34-274 (284)
55 PLN03134 glycine-rich RNA-bind 99.7 7.7E-16 1.7E-20 125.5 11.2 82 362-443 33-118 (144)
56 KOG0106 Alternative splicing f 99.6 4.7E-16 1E-20 131.6 8.2 163 255-433 3-165 (216)
57 KOG1548 Transcription elongati 99.6 7.3E-15 1.6E-19 129.4 15.7 183 253-436 134-349 (382)
58 KOG4307 RNA binding protein RB 99.6 1.8E-14 4E-19 137.3 19.3 71 365-435 869-943 (944)
59 KOG4205 RNA-binding protein mu 99.6 1.8E-15 3.9E-20 136.7 10.0 161 4-178 5-176 (311)
60 KOG4205 RNA-binding protein mu 99.6 2.4E-15 5.1E-20 135.9 10.7 168 252-444 5-181 (311)
61 PLN03134 glycine-rich RNA-bind 99.6 6.3E-15 1.4E-19 120.1 11.3 77 4-82 33-115 (144)
62 KOG4211 Splicing factor hnRNP- 99.6 3E-13 6.5E-18 125.0 20.4 256 98-419 8-339 (510)
63 PF00076 RRM_1: RNA recognitio 99.6 1.9E-14 4.2E-19 103.0 9.5 67 366-432 1-70 (70)
64 KOG4212 RNA-binding protein hn 99.5 9.7E-14 2.1E-18 125.7 13.5 232 103-435 47-290 (608)
65 PF00076 RRM_1: RNA recognitio 99.5 3.4E-14 7.4E-19 101.7 7.1 65 8-74 1-70 (70)
66 KOG0107 Alternative splicing f 99.5 6.1E-14 1.3E-18 111.9 8.4 79 252-331 9-87 (195)
67 KOG0125 Ataxin 2-binding prote 99.5 6.4E-14 1.4E-18 122.6 7.5 80 363-442 96-177 (376)
68 PLN03120 nucleic acid binding 99.5 2E-13 4.4E-18 118.8 10.4 75 363-438 4-79 (260)
69 KOG0122 Translation initiation 99.5 1.6E-13 3.6E-18 115.3 9.3 79 361-439 187-269 (270)
70 KOG0106 Alternative splicing f 99.5 1E-13 2.2E-18 117.4 7.6 156 7-172 3-165 (216)
71 PF14259 RRM_6: RNA recognitio 99.5 2.3E-13 4.9E-18 97.3 8.0 65 8-74 1-70 (70)
72 PF14259 RRM_6: RNA recognitio 99.5 3.5E-13 7.6E-18 96.3 9.0 67 366-432 1-70 (70)
73 KOG1548 Transcription elongati 99.5 5.4E-12 1.2E-16 111.5 17.7 194 101-328 135-351 (382)
74 KOG0125 Ataxin 2-binding prote 99.4 4.5E-13 9.8E-18 117.3 10.2 78 252-330 95-175 (376)
75 KOG0114 Predicted RNA-binding 99.4 1.4E-12 3E-17 94.6 9.7 76 252-328 17-94 (124)
76 KOG0107 Alternative splicing f 99.4 4.6E-13 1E-17 106.9 8.0 77 363-440 10-86 (195)
77 PLN03213 repressor of silencin 99.4 5.5E-13 1.2E-17 122.7 9.6 77 363-439 10-88 (759)
78 KOG0114 Predicted RNA-binding 99.4 9.2E-13 2E-17 95.4 8.7 77 363-439 18-95 (124)
79 PLN03120 nucleic acid binding 99.4 5.9E-13 1.3E-17 115.9 9.1 73 5-80 4-79 (260)
80 KOG0121 Nuclear cap-binding pr 99.4 4.1E-13 8.9E-18 101.2 6.0 74 3-78 34-113 (153)
81 PF13893 RRM_5: RNA recognitio 99.4 1.4E-12 3.1E-17 88.4 7.5 56 380-436 1-56 (56)
82 KOG0122 Translation initiation 99.4 1.8E-12 4E-17 109.1 9.1 77 252-329 188-269 (270)
83 KOG4660 Protein Mei2, essentia 99.4 3.2E-12 7E-17 120.2 10.4 165 3-177 73-249 (549)
84 PF13893 RRM_5: RNA recognitio 99.4 6.3E-12 1.4E-16 85.2 8.8 56 271-326 1-56 (56)
85 KOG0121 Nuclear cap-binding pr 99.3 2.4E-12 5.3E-17 97.1 7.0 76 361-436 34-113 (153)
86 PLN03121 nucleic acid binding 99.3 5.5E-12 1.2E-16 108.0 10.1 74 363-437 5-79 (243)
87 smart00362 RRM_2 RNA recogniti 99.3 5.9E-12 1.3E-16 90.3 8.6 70 365-434 1-72 (72)
88 PLN03121 nucleic acid binding 99.3 5.4E-12 1.2E-16 108.1 9.4 76 1-79 1-79 (243)
89 smart00362 RRM_2 RNA recogniti 99.3 5.9E-12 1.3E-16 90.3 8.1 68 7-76 1-72 (72)
90 KOG0111 Cyclophilin-type pepti 99.3 1.1E-12 2.4E-17 108.3 4.2 84 363-446 10-97 (298)
91 KOG1365 RNA-binding protein Fu 99.3 1.6E-11 3.5E-16 109.8 11.5 278 4-327 59-360 (508)
92 COG0724 RNA-binding proteins ( 99.3 3E-11 6.4E-16 112.2 13.5 169 253-427 115-293 (306)
93 PLN03213 repressor of silencin 99.3 7.1E-12 1.5E-16 115.5 8.6 74 5-80 10-87 (759)
94 KOG0149 Predicted RNA-binding 99.3 5.2E-12 1.1E-16 106.1 6.1 73 5-80 12-90 (247)
95 KOG0111 Cyclophilin-type pepti 99.3 4.3E-12 9.2E-17 104.9 5.4 85 1-87 6-96 (298)
96 smart00360 RRM RNA recognition 99.3 1.7E-11 3.7E-16 87.5 7.9 67 368-434 1-71 (71)
97 cd00590 RRM RRM (RNA recogniti 99.3 3.6E-11 7.7E-16 86.6 9.7 71 365-435 1-74 (74)
98 cd00590 RRM RRM (RNA recogniti 99.2 3.9E-11 8.5E-16 86.4 8.4 69 7-77 1-74 (74)
99 COG0724 RNA-binding proteins ( 99.2 9.1E-11 2E-15 108.9 12.7 127 5-133 115-258 (306)
100 KOG0113 U1 small nuclear ribon 99.2 6E-11 1.3E-15 102.9 9.8 84 359-442 97-184 (335)
101 KOG0130 RNA-binding protein RB 99.2 2.6E-11 5.6E-16 92.4 6.6 78 363-440 72-153 (170)
102 KOG1365 RNA-binding protein Fu 99.2 1.3E-10 2.8E-15 104.1 12.0 277 99-434 59-357 (508)
103 KOG0126 Predicted RNA-binding 99.2 1.7E-12 3.7E-17 104.1 -0.2 75 363-437 35-113 (219)
104 smart00360 RRM RNA recognition 99.2 7.7E-11 1.7E-15 84.0 7.0 65 10-76 1-71 (71)
105 KOG4207 Predicted splicing fac 99.2 3.4E-11 7.3E-16 98.8 5.5 79 363-441 13-95 (256)
106 KOG0130 RNA-binding protein RB 99.2 7.9E-11 1.7E-15 89.8 7.1 83 246-329 65-152 (170)
107 KOG0149 Predicted RNA-binding 99.2 6.4E-11 1.4E-15 99.6 7.2 73 364-437 13-89 (247)
108 KOG0112 Large RNA-binding prot 99.2 2.3E-11 5E-16 120.1 4.5 158 252-442 371-534 (975)
109 KOG4207 Predicted splicing fac 99.1 7.3E-11 1.6E-15 96.9 5.9 76 253-329 13-93 (256)
110 KOG0415 Predicted peptidyl pro 99.1 1E-10 2.2E-15 103.6 6.6 83 359-441 235-321 (479)
111 KOG0132 RNA polymerase II C-te 99.1 1.1E-10 2.5E-15 113.4 7.3 75 4-80 420-494 (894)
112 smart00361 RRM_1 RNA recogniti 99.1 2.9E-10 6.2E-15 80.8 7.1 58 377-434 2-70 (70)
113 KOG0126 Predicted RNA-binding 99.1 1.7E-11 3.8E-16 98.4 0.3 76 253-329 35-115 (219)
114 KOG0108 mRNA cleavage and poly 99.1 2.1E-10 4.6E-15 108.7 7.6 78 364-441 19-100 (435)
115 KOG0153 Predicted RNA-binding 99.1 4.7E-10 1E-14 99.5 7.9 77 3-80 226-302 (377)
116 KOG0108 mRNA cleavage and poly 99.0 4.2E-10 9E-15 106.8 7.7 78 2-81 14-98 (435)
117 KOG4307 RNA binding protein RB 99.0 1.1E-08 2.3E-13 98.7 15.3 186 253-441 311-516 (944)
118 KOG0113 U1 small nuclear ribon 99.0 3.3E-09 7.2E-14 92.3 10.2 81 250-331 98-183 (335)
119 KOG0129 Predicted RNA-binding 99.0 1.6E-08 3.6E-13 94.8 15.5 159 250-420 256-432 (520)
120 KOG0132 RNA polymerase II C-te 99.0 1.2E-09 2.6E-14 106.5 8.1 79 363-443 421-499 (894)
121 smart00361 RRM_1 RNA recogniti 98.9 3.6E-09 7.7E-14 75.1 7.3 57 268-324 2-70 (70)
122 KOG0153 Predicted RNA-binding 98.9 3.8E-09 8.3E-14 93.9 7.9 75 362-438 227-302 (377)
123 KOG4454 RNA binding protein (R 98.9 3.5E-10 7.6E-15 93.8 0.7 134 2-164 6-151 (267)
124 KOG4208 Nucleolar RNA-binding 98.9 8.7E-09 1.9E-13 85.2 8.1 79 361-439 47-130 (214)
125 KOG0112 Large RNA-binding prot 98.8 2.5E-09 5.4E-14 106.1 4.8 156 4-178 371-531 (975)
126 KOG4660 Protein Mei2, essentia 98.8 3.1E-09 6.8E-14 100.4 4.3 178 251-439 73-250 (549)
127 KOG0129 Predicted RNA-binding 98.8 1.6E-07 3.4E-12 88.3 14.0 148 3-157 257-432 (520)
128 KOG0128 RNA-binding protein SA 98.8 3.9E-10 8.6E-15 111.2 -3.6 318 9-444 483-820 (881)
129 KOG0415 Predicted peptidyl pro 98.8 1.1E-08 2.4E-13 90.9 5.7 78 1-80 235-318 (479)
130 KOG0128 RNA-binding protein SA 98.7 5.1E-10 1.1E-14 110.4 -3.8 225 8-328 574-814 (881)
131 KOG4661 Hsp27-ERE-TATA-binding 98.7 7.4E-08 1.6E-12 90.9 8.8 82 359-440 401-486 (940)
132 KOG0226 RNA-binding proteins [ 98.7 1E-07 2.3E-12 81.2 8.9 158 255-435 98-266 (290)
133 KOG4676 Splicing factor, argin 98.6 1.1E-08 2.3E-13 92.3 1.2 181 255-438 9-225 (479)
134 KOG0151 Predicted splicing reg 98.6 5.9E-08 1.3E-12 94.0 6.2 80 361-440 172-258 (877)
135 PF04059 RRM_2: RNA recognitio 98.6 5.4E-07 1.2E-11 67.1 9.5 79 364-442 2-90 (97)
136 KOG4661 Hsp27-ERE-TATA-binding 98.5 2.1E-07 4.6E-12 87.9 6.8 79 251-330 403-486 (940)
137 KOG4210 Nuclear localization s 98.5 9.6E-08 2.1E-12 86.7 4.4 168 253-440 88-265 (285)
138 KOG0533 RRM motif-containing p 98.5 5.1E-07 1.1E-11 78.9 8.3 79 363-441 83-164 (243)
139 KOG2193 IGF-II mRNA-binding pr 98.5 1.1E-08 2.3E-13 93.1 -2.2 155 255-441 3-159 (584)
140 KOG4208 Nucleolar RNA-binding 98.5 5.9E-07 1.3E-11 74.6 7.9 76 253-329 49-130 (214)
141 PF11608 Limkain-b1: Limkain b 98.4 1.7E-06 3.7E-11 60.9 8.3 69 364-438 3-76 (90)
142 KOG4454 RNA binding protein (R 98.4 8.3E-08 1.8E-12 79.9 1.5 133 253-423 9-147 (267)
143 KOG0151 Predicted splicing reg 98.4 6.7E-07 1.5E-11 86.9 7.6 81 250-331 171-259 (877)
144 KOG0116 RasGAP SH3 binding pro 98.4 3.9E-07 8.5E-12 86.3 5.9 70 6-78 289-364 (419)
145 KOG0116 RasGAP SH3 binding pro 98.3 1.2E-06 2.6E-11 83.0 6.4 76 362-438 287-366 (419)
146 KOG0533 RRM motif-containing p 98.3 4E-06 8.7E-11 73.3 8.3 78 253-331 83-164 (243)
147 PF11608 Limkain-b1: Limkain b 98.2 2.9E-06 6.2E-11 59.8 5.8 69 6-80 3-76 (90)
148 PF08777 RRM_3: RNA binding mo 98.2 2.9E-06 6.4E-11 64.8 6.2 71 7-77 3-76 (105)
149 KOG4209 Splicing factor RNPS1, 98.2 2.4E-06 5.3E-11 75.0 5.9 77 362-439 100-180 (231)
150 PF04059 RRM_2: RNA recognitio 98.1 1.2E-05 2.5E-10 60.0 7.3 75 6-80 2-86 (97)
151 PF08777 RRM_3: RNA binding mo 98.1 1.1E-05 2.3E-10 61.7 6.9 70 363-434 1-75 (105)
152 KOG4210 Nuclear localization s 98.1 5.3E-06 1.2E-10 75.5 5.2 164 5-176 88-262 (285)
153 KOG4676 Splicing factor, argin 98.1 4.1E-06 8.9E-11 76.0 4.3 189 102-317 9-214 (479)
154 KOG0226 RNA-binding proteins [ 98.0 4.1E-06 8.9E-11 71.7 3.9 154 9-172 100-266 (290)
155 PF14605 Nup35_RRM_2: Nup53/35 98.0 6.9E-06 1.5E-10 54.1 4.1 53 5-58 1-53 (53)
156 KOG4209 Splicing factor RNPS1, 97.9 2.4E-05 5.1E-10 68.8 5.7 73 4-79 100-178 (231)
157 KOG2193 IGF-II mRNA-binding pr 97.8 2.3E-06 5E-11 78.3 -1.8 152 7-176 3-155 (584)
158 COG5175 MOT2 Transcriptional r 97.8 5.3E-05 1.1E-09 67.5 6.2 75 100-176 114-201 (480)
159 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.8E-05 1.9E-09 48.8 5.5 52 254-308 2-53 (53)
160 COG5175 MOT2 Transcriptional r 97.7 7.6E-05 1.6E-09 66.6 5.8 74 6-81 115-203 (480)
161 KOG2202 U2 snRNP splicing fact 97.6 3.5E-05 7.7E-10 66.5 2.2 64 378-441 83-150 (260)
162 KOG1996 mRNA splicing factor [ 97.5 0.00027 5.8E-09 62.0 6.5 78 361-438 279-366 (378)
163 KOG1855 Predicted RNA-binding 97.5 5.6E-05 1.2E-09 69.7 2.5 61 4-64 230-309 (484)
164 KOG0115 RNA-binding protein p5 97.5 0.00038 8.2E-09 60.1 7.0 91 302-427 5-98 (275)
165 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00084 1.8E-08 50.5 7.5 72 253-327 6-90 (100)
166 KOG2416 Acinus (induces apopto 97.3 0.00022 4.8E-09 68.5 3.8 81 359-441 440-524 (718)
167 KOG1995 Conserved Zn-finger pr 97.2 0.00028 6.1E-09 64.0 3.8 78 363-440 66-155 (351)
168 PF08952 DUF1866: Domain of un 97.2 0.0024 5.1E-08 51.1 8.4 72 255-330 29-108 (146)
169 KOG3152 TBP-binding protein, a 97.2 0.00021 4.5E-09 61.6 2.6 68 363-430 74-157 (278)
170 KOG1855 Predicted RNA-binding 97.2 0.00026 5.7E-09 65.4 3.1 73 361-433 229-318 (484)
171 KOG2314 Translation initiation 97.2 0.00084 1.8E-08 64.3 6.3 72 363-434 58-139 (698)
172 PF08952 DUF1866: Domain of un 97.2 0.0018 4E-08 51.7 7.2 76 1-81 23-107 (146)
173 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0031 6.8E-08 47.4 7.9 72 364-437 7-90 (100)
174 KOG1996 mRNA splicing factor [ 97.1 0.0013 2.7E-08 57.9 6.5 60 268-327 300-365 (378)
175 PF08675 RNA_bind: RNA binding 97.0 0.0029 6.4E-08 44.9 6.3 54 8-63 11-64 (87)
176 KOG3152 TBP-binding protein, a 97.0 0.0004 8.6E-09 59.9 2.5 64 255-319 76-156 (278)
177 KOG2202 U2 snRNP splicing fact 97.0 0.00039 8.4E-09 60.2 2.2 62 270-331 84-150 (260)
178 KOG1995 Conserved Zn-finger pr 96.9 0.0011 2.4E-08 60.2 4.1 80 250-330 63-155 (351)
179 KOG2416 Acinus (induces apopto 96.8 0.00082 1.8E-08 64.8 2.7 81 3-83 442-524 (718)
180 PF10309 DUF2414: Protein of u 96.7 0.0086 1.9E-07 40.4 6.5 53 255-311 7-62 (62)
181 KOG2314 Translation initiation 96.7 0.0056 1.2E-07 58.9 7.4 70 254-325 59-140 (698)
182 PF10309 DUF2414: Protein of u 96.7 0.0066 1.4E-07 40.9 5.7 53 6-61 6-62 (62)
183 PF08675 RNA_bind: RNA binding 96.6 0.012 2.5E-07 41.9 6.5 55 364-423 10-64 (87)
184 PF15023 DUF4523: Protein of u 96.5 0.017 3.8E-07 45.4 7.5 75 359-437 82-160 (166)
185 KOG0115 RNA-binding protein p5 96.4 0.013 2.7E-07 51.0 7.1 75 255-330 33-115 (275)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.012 2.7E-07 49.7 3.7 60 5-64 7-78 (176)
187 PF15023 DUF4523: Protein of u 95.6 0.06 1.3E-06 42.5 6.9 73 2-78 83-159 (166)
188 PF04847 Calcipressin: Calcipr 95.6 0.031 6.8E-07 47.4 6.0 64 376-441 8-73 (184)
189 KOG2591 c-Mpl binding protein, 95.5 0.044 9.4E-07 52.9 7.1 67 363-432 175-245 (684)
190 KOG4285 Mitotic phosphoprotein 95.5 0.085 1.8E-06 47.1 8.2 74 253-330 197-271 (350)
191 PF07576 BRAP2: BRCA1-associat 95.4 0.14 3E-06 39.4 8.3 73 254-326 13-92 (110)
192 PF04847 Calcipressin: Calcipr 95.4 0.055 1.2E-06 45.9 6.7 62 18-81 8-71 (184)
193 KOG2135 Proteins containing th 95.3 0.039 8.4E-07 52.3 6.1 78 251-330 370-447 (526)
194 PF07576 BRAP2: BRCA1-associat 95.3 0.36 7.8E-06 37.1 10.3 73 365-437 15-93 (110)
195 KOG2591 c-Mpl binding protein, 95.3 0.025 5.4E-07 54.5 4.7 71 6-77 176-248 (684)
196 KOG4574 RNA-binding protein (c 95.2 0.012 2.6E-07 59.5 2.4 80 8-87 301-380 (1007)
197 KOG2068 MOT2 transcription fac 94.6 0.012 2.7E-07 53.3 0.8 76 364-439 78-163 (327)
198 KOG4849 mRNA cleavage factor I 94.2 0.11 2.4E-06 47.2 5.8 77 97-175 77-160 (498)
199 KOG4574 RNA-binding protein (c 94.2 0.041 8.8E-07 55.8 3.4 74 368-443 303-378 (1007)
200 KOG2068 MOT2 transcription fac 94.2 0.018 3.8E-07 52.3 0.8 76 255-330 79-164 (327)
201 KOG0804 Cytoplasmic Zn-finger 94.1 0.098 2.1E-06 49.4 5.4 63 3-65 72-139 (493)
202 PF10567 Nab6_mRNP_bdg: RNA-re 93.8 2.9 6.3E-05 37.6 13.7 178 253-437 15-230 (309)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 93.4 0.12 2.6E-06 43.7 4.4 75 253-328 7-97 (176)
204 KOG2135 Proteins containing th 93.1 0.053 1.2E-06 51.4 2.0 73 6-81 373-446 (526)
205 KOG0804 Cytoplasmic Zn-finger 92.6 0.42 9.1E-06 45.3 7.0 66 363-428 74-142 (493)
206 KOG4849 mRNA cleavage factor I 92.2 0.14 2.9E-06 46.6 3.2 74 364-437 81-161 (498)
207 KOG4019 Calcineurin-mediated s 92.2 0.13 2.8E-06 42.5 2.8 80 365-446 12-97 (193)
208 KOG2253 U1 snRNP complex, subu 92.2 0.15 3.2E-06 50.7 3.7 71 250-325 37-107 (668)
209 KOG4285 Mitotic phosphoprotein 92.0 0.44 9.4E-06 42.7 6.0 60 7-70 199-258 (350)
210 PF11767 SET_assoc: Histone ly 92.0 0.89 1.9E-05 31.3 6.3 55 16-75 11-65 (66)
211 PF03880 DbpA: DbpA RNA bindin 91.3 1.2 2.6E-05 31.6 6.8 59 264-326 11-74 (74)
212 PF11767 SET_assoc: Histone ly 91.1 1.7 3.8E-05 29.9 7.0 56 264-323 10-65 (66)
213 PF10567 Nab6_mRNP_bdg: RNA-re 89.7 4.9 0.00011 36.2 10.4 153 4-160 14-213 (309)
214 PF07292 NID: Nmi/IFP 35 domai 89.4 0.7 1.5E-05 33.8 4.2 72 44-121 1-73 (88)
215 KOG2318 Uncharacterized conser 89.3 1.8 3.8E-05 42.6 7.9 78 250-327 171-306 (650)
216 PF03880 DbpA: DbpA RNA bindin 88.8 1.5 3.2E-05 31.1 5.6 58 16-78 12-74 (74)
217 KOG2318 Uncharacterized conser 87.4 3 6.4E-05 41.2 8.1 77 360-436 171-305 (650)
218 PF07292 NID: Nmi/IFP 35 domai 86.8 1.4 2.9E-05 32.3 4.3 73 294-385 1-74 (88)
219 KOG2253 U1 snRNP complex, subu 84.8 0.45 9.7E-06 47.4 1.3 70 3-77 38-107 (668)
220 KOG2891 Surface glycoprotein [ 68.4 2.6 5.5E-05 37.4 1.2 80 362-441 148-270 (445)
221 PF14111 DUF4283: Domain of un 66.4 6.9 0.00015 32.0 3.4 106 266-397 29-139 (153)
222 PF14893 PNMA: PNMA 63.1 4.6 0.0001 37.8 1.9 47 4-50 17-71 (331)
223 PF02714 DUF221: Domain of unk 58.9 15 0.00033 34.6 4.6 57 44-123 1-57 (325)
224 KOG1295 Nonsense-mediated deca 57.2 14 0.00029 34.9 3.7 59 6-64 8-75 (376)
225 PF03468 XS: XS domain; Inter 55.9 17 0.00037 28.3 3.6 51 364-414 9-69 (116)
226 PF14111 DUF4283: Domain of un 54.4 13 0.00028 30.4 3.0 110 15-134 27-139 (153)
227 KOG4019 Calcineurin-mediated s 54.0 8.5 0.00018 32.1 1.7 73 7-81 12-90 (193)
228 KOG4483 Uncharacterized conser 49.4 30 0.00064 32.8 4.6 54 6-60 392-446 (528)
229 COG5638 Uncharacterized conser 47.3 83 0.0018 30.0 7.1 77 359-435 142-294 (622)
230 KOG4483 Uncharacterized conser 45.9 46 0.001 31.5 5.3 56 362-420 390-446 (528)
231 KOG2891 Surface glycoprotein [ 45.9 6 0.00013 35.1 -0.3 59 6-64 150-245 (445)
232 PF15407 Spo7_2_N: Sporulation 44.1 10 0.00023 26.2 0.7 22 4-25 26-47 (67)
233 PRK14548 50S ribosomal protein 43.9 57 0.0012 23.7 4.5 53 9-61 24-81 (84)
234 PF15513 DUF4651: Domain of un 43.2 66 0.0014 21.8 4.3 19 377-395 8-26 (62)
235 TIGR03636 L23_arch archaeal ri 42.9 64 0.0014 23.0 4.5 53 9-61 17-74 (77)
236 COG5638 Uncharacterized conser 41.1 1.3E+02 0.0028 28.8 7.3 78 250-327 143-296 (622)
237 PF03468 XS: XS domain; Inter 41.1 26 0.00056 27.3 2.5 45 7-52 10-67 (116)
238 KOG4410 5-formyltetrahydrofola 39.5 42 0.00091 30.2 3.8 48 102-150 332-379 (396)
239 TIGR03636 L23_arch archaeal ri 39.4 1.4E+02 0.003 21.3 6.2 55 256-311 16-74 (77)
240 PF11823 DUF3343: Protein of u 38.4 41 0.0009 23.5 3.1 29 402-430 2-30 (73)
241 PRK14548 50S ribosomal protein 37.9 1.5E+02 0.0031 21.6 5.8 55 367-421 24-81 (84)
242 KOG4410 5-formyltetrahydrofola 34.7 53 0.0011 29.6 3.7 49 5-53 330-379 (396)
243 PF03439 Spt5-NGN: Early trans 32.0 76 0.0016 23.0 3.7 36 280-315 33-68 (84)
244 PF08002 DUF1697: Protein of u 31.7 71 0.0015 25.7 3.8 41 6-47 4-48 (137)
245 cd04889 ACT_PDH-BS-like C-term 30.7 1.5E+02 0.0032 19.0 5.7 43 376-418 11-55 (56)
246 KOG4008 rRNA processing protei 29.7 33 0.00071 30.1 1.6 33 1-33 36-68 (261)
247 PF00403 HMA: Heavy-metal-asso 28.8 1.7E+02 0.0038 19.2 6.0 54 7-60 1-58 (62)
248 PF03439 Spt5-NGN: Early trans 28.5 86 0.0019 22.7 3.4 34 126-160 33-66 (84)
249 PF13046 DUF3906: Protein of u 28.4 87 0.0019 21.3 3.1 32 375-406 30-63 (64)
250 PF11061 DUF2862: Protein of u 28.1 1.3E+02 0.0029 20.5 3.9 32 20-51 18-52 (64)
251 PF02714 DUF221: Domain of unk 25.2 79 0.0017 29.7 3.5 34 294-329 1-34 (325)
252 PF08544 GHMP_kinases_C: GHMP 25.1 1.8E+02 0.0038 20.5 4.7 42 20-62 37-80 (85)
253 cd04908 ACT_Bt0572_1 N-termina 25.0 2.2E+02 0.0048 19.1 8.0 55 365-420 3-59 (66)
254 KOG1635 Peptide methionine sul 24.7 1.1E+02 0.0023 25.6 3.6 63 5-67 75-141 (191)
255 KOG4213 RNA-binding protein La 24.2 75 0.0016 26.6 2.7 52 6-61 112-170 (205)
256 KOG4365 Uncharacterized conser 23.7 13 0.00029 35.5 -1.9 75 365-440 5-83 (572)
257 KOG1295 Nonsense-mediated deca 23.6 92 0.002 29.6 3.4 64 364-427 8-78 (376)
258 COG3254 Uncharacterized conser 22.9 2.8E+02 0.0062 21.0 5.2 41 378-418 27-68 (105)
259 CHL00123 rps6 ribosomal protei 22.5 3.3E+02 0.0072 20.3 5.8 55 365-421 10-82 (97)
260 PF03544 TonB_C: Gram-negative 22.0 1.4E+02 0.0031 20.7 3.7 46 28-77 26-71 (79)
261 PF08156 NOP5NT: NOP5NT (NUC12 20.7 33 0.00072 23.7 0.0 39 378-422 27-65 (67)
262 KOG4008 rRNA processing protei 20.5 88 0.0019 27.5 2.5 35 362-396 39-73 (261)
263 PF02829 3H: 3H domain; Inter 20.3 2.9E+02 0.0062 20.8 4.9 51 14-64 6-59 (98)
No 1
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=7.5e-67 Score=513.57 Aligned_cols=434 Identities=34% Similarity=0.571 Sum_probs=340.8
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccccc
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL 83 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~ 83 (446)
||++|||+|||.++||++|+++|++||+|.+|.+++++++|||+|.+.++|++|++.++..+..++|++|+|+|+.+++.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 79999999999999999999999999999999999999999999999999999999875555689999999999987654
Q ss_pred cccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCC-ceEEEEEecChhhHHHHHHHhCCCC
Q 013267 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSA-GFQALIQYQLRPSAVVARSSLQGRN 162 (446)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~-g~~afv~f~~~~~A~~a~~~l~~~~ 162 (446)
....... ........+++|+|.||+.++|+++|+++|++||.|.+|.++++.. |+ |||+|.+.++|.+|++.|||..
T Consensus 81 ~~~~~~~-~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~-afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 81 KRDGNSD-FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQ-ALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred ccCCCCc-ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceE-EEEEECCHHHHHHHHHHhcCCc
Confidence 4433111 0112345788899999999999999999999999999999887544 56 9999999999999999999999
Q ss_pred CCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCC-------CCCCCCCCC----CCCCCC---------C
Q 013267 163 IYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-------QSGYSEAGG----MYAPGA---------R 222 (446)
Q Consensus 163 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----~~~~~~---------~ 222 (446)
+++++++|+|.|++...+++.++++++|||+.|.++ +.+.... ++......+ ..+.+. .
T Consensus 159 i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (481)
T TIGR01649 159 IYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP-GRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAG 237 (481)
T ss_pred ccCCceEEEEEEecCCCceeEecccCCCCCcCCCCC-CCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccc
Confidence 999989999999999999999999999999999886 2111110 010000000 000000 0
Q ss_pred CCCcccchh-hhhhhhccC-CCCC-----CCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEE
Q 013267 223 AVAFPQMAN-AAAIAAAFG-GGLP-----PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHAL 295 (446)
Q Consensus 223 ~~~~~~~~~-~~~~~~~~~-~~~~-----~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~af 295 (446)
+..+++... ......+.+ ...+ .+....+++++|||+||+++.+++++|+++|+.||.|.+|+++.+++|+||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~af 317 (481)
T TIGR01649 238 GDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETAL 317 (481)
T ss_pred cccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEE
Confidence 000000000 000000000 0000 011124577899999999535999999999999999999999998889999
Q ss_pred EEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCCCC---------CCccccccCCcccccccccccccccCCCccEE
Q 013267 296 VQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG---------ADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMI 366 (446)
Q Consensus 296 V~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 366 (446)
|+|.+.++|..|++.|||..|.|+.|+|.+++....... ....+|..+...|+..+..+++....+|+++|
T Consensus 318 V~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L 397 (481)
T TIGR01649 318 IEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATL 397 (481)
T ss_pred EEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEE
Confidence 999999999999999999999999999999877654221 11255666666677666555555567889999
Q ss_pred EEeCCCCCCCHHHHHHHhhccCC--eeEEEEEeeC--CceEEEEEeCCHHHHHHHHHHhCCCccCCCe------EEEEee
Q 013267 367 HLSTLPQDVTEEEIVSHLEEHGS--IVNTKLFEMN--GKKQALVLFETEEQATEALVCKHASSLGGSI------IRISFS 436 (446)
Q Consensus 367 ~v~nlp~~~t~~~l~~~F~~~G~--v~~~~i~~~~--~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~------l~v~~a 436 (446)
||+|||..+++++|+++|+.||. |..+++++.+ .+++|||+|.+.++|.+|+..|||..|.|+. |+|+||
T Consensus 398 ~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs 477 (481)
T TIGR01649 398 HLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFS 477 (481)
T ss_pred EEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEec
Confidence 99999999999999999999998 8888887543 2689999999999999999999999999985 999999
Q ss_pred cCcc
Q 013267 437 QLQS 440 (446)
Q Consensus 437 ~~~~ 440 (446)
+++.
T Consensus 478 ~~~~ 481 (481)
T TIGR01649 478 TSRI 481 (481)
T ss_pred cCCC
Confidence 9863
No 2
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=100.00 E-value=2.2e-63 Score=439.71 Aligned_cols=432 Identities=44% Similarity=0.721 Sum_probs=369.0
Q ss_pred CCCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 1 ~~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
|+.||++|++|+||.++||+||.+++.+||.|.++.+++++++||++|.+.++|...+.++...++.++|++|.|+|+.+
T Consensus 24 ~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~ 103 (492)
T KOG1190|consen 24 MAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNH 103 (492)
T ss_pred ccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccchhhhhhhcchhhhhheeecccccCccccCcceeehhhhH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccccCCC---------------------------CCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEE
Q 013267 81 QELTTMEQNAQ---------------------------GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF 133 (446)
Q Consensus 81 ~~~~~~~~~~~---------------------------~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~ 133 (446)
.+........+ +..+++..+++++|.|+-..++-+-|+.+|++||.|.+|..+
T Consensus 104 ~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF 183 (492)
T KOG1190|consen 104 SELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITF 183 (492)
T ss_pred HHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEE
Confidence 66655544331 112236789999999999999999999999999999999999
Q ss_pred ecCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCC
Q 013267 134 QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213 (446)
Q Consensus 134 ~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (446)
.++.||+|+|+|.+++.|..|...|+|+.|+++||+|+|.|++...++++++++++|||++|.+|.+...++.++.....
T Consensus 184 ~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa 263 (492)
T KOG1190|consen 184 TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAA 263 (492)
T ss_pred ecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999885443322221111
Q ss_pred CCCCCC-CCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCC
Q 013267 214 GGMYAP-GARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPD 292 (446)
Q Consensus 214 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g 292 (446)
....+. ...+.++|....... .+.+....++ .+++|.|.||.++.+|.+.|..+|+.||.|.+|+|+.+++.
T Consensus 264 ~~~~~~~~g~p~aip~~~~~a~--~a~~~~~~~~-----~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd 336 (492)
T KOG1190|consen 264 FGSVPAVHGAPLAIPSGAAGAN--AADGKIESPS-----ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD 336 (492)
T ss_pred ccccccccCCcccCCccchhhc--ccccccccCC-----CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc
Confidence 110000 001111221111111 1112222222 26799999999999999999999999999999999999999
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCCC-------CCCccccccCCcccccccccccccccCCCccE
Q 013267 293 HALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQ-------GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKM 365 (446)
Q Consensus 293 ~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (446)
.|.|.|.+..+|+.|++.|+|..+.|+.|+|.+++.+..+. .+..+||..+++.||.+|+++|+.+..+|+.+
T Consensus 337 ~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~Ppsat 416 (492)
T KOG1190|consen 337 NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSAT 416 (492)
T ss_pred ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhh
Confidence 99999999999999999999999999999999999998743 34478899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccC-CCeEEEEeecCc
Q 013267 366 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQLQ 439 (446)
Q Consensus 366 l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~~ 439 (446)
|++.|+|.+++|++|+..|..-|...+...+-.+++.++++.+.++++|..|+..+|+..++ +..|+|+|||..
T Consensus 417 lHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 417 LHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred eeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999999999999999999999887766665567889999999999999999999999999 569999999974
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.4e-53 Score=429.08 Aligned_cols=345 Identities=20% Similarity=0.301 Sum_probs=281.9
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
+|||+|||+++||++|+++|++||+|.+|+|++|+ |||||+|.+.++|++|+..+++. .++|++|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~--~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFK--RLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeeEEeecccc
Confidence 69999999999999999999999999999998763 79999999999999999999988 89999999999765
Q ss_pred ccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe----cCCceEEEEEecChhhHHHHHH
Q 013267 81 QELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ----KSAGFQALIQYQLRPSAVVARS 156 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~----~~~g~~afv~f~~~~~A~~a~~ 156 (446)
+..... .....|||+|||.++++++|+++|+.||.|..|.+.. +++|| |||+|.+.++|.+|++
T Consensus 80 ~~~~~~-----------~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~-afV~F~~~e~A~~Ai~ 147 (562)
T TIGR01628 80 DPSLRR-----------SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGY-GFVHFEKEESAKAAIQ 147 (562)
T ss_pred cccccc-----------cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccE-EEEEECCHHHHHHHHH
Confidence 432211 1123489999999999999999999999999988764 57888 9999999999999999
Q ss_pred HhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 013267 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIA 236 (446)
Q Consensus 157 ~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (446)
.++|..+.++ .+.+........ +. .
T Consensus 148 ~lng~~~~~~--~i~v~~~~~~~~---------~~---------~----------------------------------- 172 (562)
T TIGR01628 148 KVNGMLLNDK--EVYVGRFIKKHE---------RE---------A----------------------------------- 172 (562)
T ss_pred HhcccEecCc--eEEEeccccccc---------cc---------c-----------------------------------
Confidence 9999988776 555543321100 00 0
Q ss_pred hccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhc
Q 013267 237 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLK 312 (446)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~ln 312 (446)
......++|||+||+. .+++++|+++|+.||.|.++.+..+. +|+|||+|.+.++|.+|++.||
T Consensus 173 -----------~~~~~~~~l~V~nl~~-~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~ 240 (562)
T TIGR01628 173 -----------APLKKFTNLYVKNLDP-SVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMN 240 (562)
T ss_pred -----------ccccCCCeEEEeCCCC-cCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 0011223899999995 79999999999999999999998764 6799999999999999999999
Q ss_pred CCeeC----CcEEEEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccC
Q 013267 313 GALLF----GKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 388 (446)
Q Consensus 313 g~~~~----g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G 388 (446)
|..+. |+.+.|.++..+..........+.. ..........+++|||+|||.++|+++|+++|++||
T Consensus 241 g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~----------~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G 310 (562)
T TIGR01628 241 GKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEE----------LQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECG 310 (562)
T ss_pred CcEecccccceeeEeecccChhhhHHHHHhhHHh----------hhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcC
Confidence 99999 9999999877654321111000000 000001123457899999999999999999999999
Q ss_pred CeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcccc
Q 013267 389 SIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 442 (446)
Q Consensus 389 ~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 442 (446)
.|.+++++.+. .+|||||+|.+.++|.+|++.|||+.++|+.|.|.|++.+..+
T Consensus 311 ~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 311 EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 99999998653 3889999999999999999999999999999999999976543
No 4
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-48 Score=339.56 Aligned_cols=434 Identities=31% Similarity=0.520 Sum_probs=359.6
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
+.+|.+|+|++|-..++|.||.+-++.||+|.-+.+++.+.+|.|+|++.+.|.+|++..-..++.+.|++-.++||..+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq 107 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQ 107 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhh
Confidence 45899999999999999999999999999999999999999999999999999999999888899999999999999887
Q ss_pred cccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhhHHHHHHHhCCC
Q 013267 82 ELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGR 161 (446)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~~~ 161 (446)
.+.++...+ ..+.+++++.|.|.-.++|.+-|+.++.+.|.|.+|.++++ .|.+|.|+|.+.+.|++|.+.|||.
T Consensus 108 ~i~R~g~es----~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGA 182 (494)
T KOG1456|consen 108 CIERPGDES----ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGA 182 (494)
T ss_pred hhccCCCCC----CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccc
Confidence 777766432 24678999999999999999999999999999999999999 6778999999999999999999999
Q ss_pred CCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCC-CCCCC-----CCCCC--------CCCCCCCCCCCCCCCcc
Q 013267 162 NIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAE-QKGRP-----SQSGY--------SEAGGMYAPGARAVAFP 227 (446)
Q Consensus 162 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~--------~~~~~~~~~~~~~~~~~ 227 (446)
.|+.+||+|+|.|+++.++++..|...+|||+.|.++.. ..... .++.. ++.++.+.++.+.....
T Consensus 183 DIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~ 262 (494)
T KOG1456|consen 183 DIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPH 262 (494)
T ss_pred cccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCC
Confidence 999999999999999999999999988899999986322 11111 11111 11111122211111110
Q ss_pred cchhhhhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHH
Q 013267 228 QMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELA 307 (446)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A 307 (446)
+.+ +........+..++.+....+++++.|.+|+...++.+.|.++|..||.|++|++++.+.|.|.|++.+....++|
T Consensus 263 ~~P-~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~ 341 (494)
T KOG1456|consen 263 PPP-SRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERA 341 (494)
T ss_pred CCC-CCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHH
Confidence 000 0001111111123333446778899999999888999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeeCCcEEEEEEecCCCCC---------CCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHH
Q 013267 308 VHFLKGALLFGKRLEVNFSKHPNIT---------QGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 378 (446)
Q Consensus 308 ~~~lng~~~~g~~l~v~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~ 378 (446)
+..|||..+.|.+|.|..++..... -..+.+||+.+.++||.++.........+|+++|+.-|.|..+||+
T Consensus 342 v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe 421 (494)
T KOG1456|consen 342 VTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEE 421 (494)
T ss_pred HHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHH
Confidence 9999999999999999999887762 2568899999999999998665555788999999999999999999
Q ss_pred HHHHHhhccCC-eeEEEEEeeCC--ceEEEEEeCCHHHHHHHHHHhCCCccCC------CeEEEEeecCccc
Q 013267 379 EIVSHLEEHGS-IVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGG------SIIRISFSQLQSI 441 (446)
Q Consensus 379 ~l~~~F~~~G~-v~~~~i~~~~~--~g~~fV~f~~~~~A~~A~~~l~~~~~~g------~~l~v~~a~~~~~ 441 (446)
.|..+|...+. -.++++++.++ ...|+++|++..+|..||..+|...+.+ -.|+++||.++++
T Consensus 422 ~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~~~ 493 (494)
T KOG1456|consen 422 QLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSKHM 493 (494)
T ss_pred HHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccccC
Confidence 99999988764 46778886655 3399999999999999999999999986 3899999998864
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.6e-42 Score=330.19 Aligned_cols=310 Identities=18% Similarity=0.230 Sum_probs=218.9
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
++.+|||+|||.++||+||+++|+.||+|.+|++++++ |||||+|.+.++|.+|++.|++. .+.|++|+|.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~--~l~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGL--RLQNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccE--EECCeeEEEEe
Confidence 67899999999999999999999999999999998763 89999999999999999999998 89999999999
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHH
Q 013267 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAV 152 (446)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~ 152 (446)
+.+.... .....|||+|||.++++++|+++|++||.|..+.+.. .++|| |||+|.+.++|+
T Consensus 80 a~~~~~~-------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~A~ 145 (352)
T TIGR01661 80 ARPSSDS-------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGV-GFIRFDKRDEAD 145 (352)
T ss_pred ecccccc-------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcE-EEEEECCHHHHH
Confidence 8653211 1223599999999999999999999999999887763 46788 999999999999
Q ss_pred HHHHHhCCCCCCCCCceEEEeeeCCCceeee-eCCCcccCCcCCCCCCCCCCCCCCCCCCCC-C---CCCCCCCCC----
Q 013267 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVN-YNNERSRDFTNPNLPAEQKGRPSQSGYSEA-G---GMYAPGARA---- 223 (446)
Q Consensus 153 ~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~---- 223 (446)
.|++.|+|..+.+...++.+.|+........ ........+..+.............+...+ . .........
T Consensus 146 ~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (352)
T TIGR01661 146 RAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAV 225 (352)
T ss_pred HHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhh
Confidence 9999999999888777889988865432110 000001111111100000000000000000 0 000000000
Q ss_pred -------CCcccchhhhh-hh---hccC-C--CCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeC
Q 013267 224 -------VAFPQMANAAA-IA---AAFG-G--GLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRN 289 (446)
Q Consensus 224 -------~~~~~~~~~~~-~~---~~~~-~--~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~ 289 (446)
...++...... .. .... . ...........+.+|||+|||+ .+++++|+++|++||.|.+++|+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~-~~~e~~L~~~F~~fG~v~~v~i~~d 304 (352)
T TIGR01661 226 LAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSP-DTDETVLWQLFGPFGAVQNVKIIRD 304 (352)
T ss_pred hhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCC-CCCHHHHHHHHHhCCCeEEEEEeEc
Confidence 00000000000 00 0000 0 0000111123345799999996 6999999999999999999999987
Q ss_pred C-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCC
Q 013267 290 K-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 330 (446)
Q Consensus 290 ~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~ 330 (446)
. +|||||+|.+.++|..||+.|||..|.|+.|+|.|..++.
T Consensus 305 ~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 305 LTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 5 8999999999999999999999999999999999988663
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=5.6e-41 Score=320.98 Aligned_cols=268 Identities=18% Similarity=0.281 Sum_probs=211.6
Q ss_pred EEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeee
Q 013267 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (446)
Q Consensus 101 ~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~ 175 (446)
..|||+|||.++++++|+++|++||+|.+|.++. +++|| |||+|.+.++|.+|++.|+|..+.++ +|+|.|+
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~-afV~f~~~~~A~~Ai~~l~g~~l~g~--~i~v~~a 80 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGY-GFVNYVRPEDAEKAVNSLNGLRLQNK--TIKVSYA 80 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceE-EEEEECcHHHHHHHHhhcccEEECCe--eEEEEee
Confidence 4599999999999999999999999999998874 57798 99999999999999999999999887 7888887
Q ss_pred CCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcce
Q 013267 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCT 255 (446)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (446)
.+... ....++
T Consensus 81 ~~~~~---------------------------------------------------------------------~~~~~~ 91 (352)
T TIGR01661 81 RPSSD---------------------------------------------------------------------SIKGAN 91 (352)
T ss_pred ccccc---------------------------------------------------------------------ccccce
Confidence 53210 001228
Q ss_pred EEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCC--cEEEEEEecC
Q 013267 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFG--KRLEVNFSKH 328 (446)
Q Consensus 256 l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g--~~l~v~~~~~ 328 (446)
|||+|||. .+++++|+++|+.||.|..+.++.+. +|+|||+|.+.++|..|++.|||..+.| .+|.+.|+..
T Consensus 92 l~v~~l~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~ 170 (352)
T TIGR01661 92 LYVSGLPK-TMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANN 170 (352)
T ss_pred EEECCccc-cCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCC
Confidence 99999996 79999999999999999999987753 7899999999999999999999999977 5788888765
Q ss_pred CCCCCCC-Cc---ccc-----ccCC----------------cc----------------------------cccccccc-
Q 013267 329 PNITQGA-DT---HEY-----MNSN----------------LN----------------------------RFNRNAAK- 354 (446)
Q Consensus 329 ~~~~~~~-~~---~~~-----~~~~----------------~~----------------------------~~~~~~~~- 354 (446)
....... .. ..+ ...+ .. ....+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
T TIGR01661 171 PSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATD 250 (352)
T ss_pred CCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcccc
Confidence 5421000 00 000 0000 00 00000000
Q ss_pred ----------cccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHH
Q 013267 355 ----------NYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVC 420 (446)
Q Consensus 355 ----------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~ 420 (446)
+.......+.+|||+|||.++++++|+++|++||.|.+++|+.+. .+|||||+|.+.++|.+|++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ 330 (352)
T TIGR01661 251 GQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS 330 (352)
T ss_pred ccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 000112234579999999999999999999999999999998653 389999999999999999999
Q ss_pred hCCCccCCCeEEEEeecCccc
Q 013267 421 KHASSLGGSIIRISFSQLQSI 441 (446)
Q Consensus 421 l~~~~~~g~~l~v~~a~~~~~ 441 (446)
|||..|+||.|+|+|+..+..
T Consensus 331 lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 331 LNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred hCCCEECCeEEEEEEccCCCC
Confidence 999999999999999998764
No 7
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-41 Score=311.66 Aligned_cols=337 Identities=20% Similarity=0.288 Sum_probs=275.4
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC---CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccccc
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK---NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL 83 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~---~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~ 83 (446)
+|||+ +++||.+|.+.|+++|+|+++++++|. |||||.|.++++|.+||..+|.. .++|++|+|.|+..+..
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~--~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFD--VLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCc--ccCCcEEEeehhccCCc
Confidence 68898 889999999999999999999999885 89999999999999999999999 89999999999876432
Q ss_pred cccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEec---CCceEEEEEecChhhHHHHHHHhCC
Q 013267 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK---SAGFQALIQYQLRPSAVVARSSLQG 160 (446)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~---~~g~~afv~f~~~~~A~~a~~~l~~ 160 (446)
. +||.||+++++...|++.|+.||.|..|.+... ++|| ||+|.+.++|.+|++.+||
T Consensus 78 ~------------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~--FV~f~~e~~a~~ai~~~ng 137 (369)
T KOG0123|consen 78 L------------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY--FVQFESEESAKKAIEKLNG 137 (369)
T ss_pred e------------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee--EEEeCCHHHHHHHHHHhcC
Confidence 2 899999999999999999999999999998863 4454 9999999999999999999
Q ss_pred CCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccC
Q 013267 161 RNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFG 240 (446)
Q Consensus 161 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (446)
..+.++ ++.+-......... .... .
T Consensus 138 ~ll~~k--ki~vg~~~~~~er~-------~~~~----~------------------------------------------ 162 (369)
T KOG0123|consen 138 MLLNGK--KIYVGLFERKEERE-------APLG----E------------------------------------------ 162 (369)
T ss_pred cccCCC--eeEEeeccchhhhc-------cccc----c------------------------------------------
Confidence 999888 55554433211100 0000 0
Q ss_pred CCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCee
Q 013267 241 GGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALL 316 (446)
Q Consensus 241 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~ 316 (446)
....-+.+++.|++ ...++++|..+|+.+|.|.++.++.+. ++++||.|.+.++|..|++.||+..+
T Consensus 163 --------~~~~~t~v~vk~~~-~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~ 233 (369)
T KOG0123|consen 163 --------YKKRFTNVYVKNLE-EDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIF 233 (369)
T ss_pred --------hhhhhhhhheeccc-cccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcC
Confidence 01112279999999 479999999999999999999998855 78999999999999999999999999
Q ss_pred CCcEEEEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEE
Q 013267 317 FGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 396 (446)
Q Consensus 317 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~ 396 (446)
.+..+.|..+..+..........+ ..... .+....+...|||.|++..++.+.|++.|+.||.|.+++++
T Consensus 234 ~~~~~~V~~aqkk~e~~~~l~~~~--------~~~~~--~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~ 303 (369)
T KOG0123|consen 234 GDKELYVGRAQKKSEREAELKRKF--------EQEFA--KRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVM 303 (369)
T ss_pred CccceeecccccchhhHHHHhhhh--------Hhhhh--hccccccccccccccCccccchhHHHHHHhcccceeeEEEE
Confidence 999999998776432111110000 00000 01122356789999999999999999999999999999998
Q ss_pred ee---CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcccc
Q 013267 397 EM---NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 442 (446)
Q Consensus 397 ~~---~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 442 (446)
.+ +.+|+|||+|.+.++|.+|+..+|+..+.|+.|.|.+++.+.-+
T Consensus 304 ~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r 352 (369)
T KOG0123|consen 304 VDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDR 352 (369)
T ss_pred eccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccc
Confidence 54 34889999999999999999999999999999999999866555
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4e-40 Score=275.32 Aligned_cols=297 Identities=22% Similarity=0.338 Sum_probs=219.9
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
..+.|.|-.||..+|++||+.+|...|+|++|++++|+ ||+||.|.+++||.+|++.||+- .+..+.|+|+|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGL--rLQ~KTIKVSy 117 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGL--RLQNKTIKVSY 117 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcce--eeccceEEEEe
Confidence 44678899999999999999999999999999999997 99999999999999999999988 89999999999
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeE--EEE---EecCCceEEEEEecChhhHH
Q 013267 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEK--IVT---FQKSAGFQALIQYQLRPSAV 152 (446)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~--i~~---~~~~~g~~afv~f~~~~~A~ 152 (446)
+++........+ +||.+||.++|..+|..+|++||.|.- |.+ ...++|. +||.|....+|+
T Consensus 118 ARPSs~~Ik~aN-------------LYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGV-gFiRFDKr~EAe 183 (360)
T KOG0145|consen 118 ARPSSDSIKDAN-------------LYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGV-GFIRFDKRIEAE 183 (360)
T ss_pred ccCChhhhcccc-------------eEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecce-eEEEecchhHHH
Confidence 988655443333 899999999999999999999999873 332 2478896 999999999999
Q ss_pred HHHHHhCCCCCCCCCceEEEeeeCCCceeeeeC------CCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 013267 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYN------NERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAF 226 (446)
Q Consensus 153 ~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (446)
+|+..|||..-.+..-++.|.|+...+...... ....+.+..|......+.. +... ..+......+
T Consensus 184 ~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r-----~~~~---~~~~~~~~rf 255 (360)
T KOG0145|consen 184 EAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFR-----LDNL---LNPHAAQARF 255 (360)
T ss_pred HHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhc-----cccc---cchhhhhccC
Confidence 999999999988888899999987543211000 0000111111100000000 0000 0000001112
Q ss_pred ccchhhhhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCH
Q 013267 227 PQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDG 301 (446)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~ 301 (446)
+++....+..- .+-..|.+. .....|||.||.++ .++.-|+++|.+||.|..|++++|. +||+||.+.+-
T Consensus 256 sP~~~d~m~~l-~~~~lp~~~---~~g~ciFvYNLspd-~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNY 330 (360)
T KOG0145|consen 256 SPMTIDGMSGL-AGVNLPGGP---GGGWCIFVYNLSPD-ADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNY 330 (360)
T ss_pred CCcccccccee-eeeccCCCC---CCeeEEEEEecCCC-chHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecch
Confidence 22221111100 001111111 12348999999984 8999999999999999999999875 89999999999
Q ss_pred HHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 302 FQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 302 ~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
++|..||..|||..+++|.|.|+|..++
T Consensus 331 dEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 331 DEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999999998765
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=7e-39 Score=315.42 Aligned_cols=277 Identities=22% Similarity=0.295 Sum_probs=215.5
Q ss_pred EEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhhHHHHHHHh--CCCCCCCCCceEEEeeeCCCc
Q 013267 102 LVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSL--QGRNIYDGCCQLDIQFSNLDE 179 (446)
Q Consensus 102 ~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l--~~~~~~~~~~~l~v~~~~~~~ 179 (446)
.|||+|||+++++++|+++|++||.|.++.+++ ++|+ |||+|.+.++|..|++.+ ++..+.|+ +|+|.|+....
T Consensus 4 vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-~k~~-afVef~~~e~A~~Ai~~~~~~~~~l~g~--~l~v~~s~~~~ 79 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-GKRQ-ALVEFEDEESAKACVNFATSVPIYIRGQ--PAFFNYSTSQE 79 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-CCCE-EEEEeCchHHHHHHHHHhhcCCceEcCe--EEEEEecCCcc
Confidence 389999999999999999999999999998875 5787 999999999999999975 56667666 89999986432
Q ss_pred eeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEEEe
Q 013267 180 LQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVS 259 (446)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 259 (446)
.....+. + . .. .......+|+|.
T Consensus 80 ~~~~~~~----~------------------~-~~----------------------------------~~~~~~~~v~v~ 102 (481)
T TIGR01649 80 IKRDGNS----D------------------F-DS----------------------------------AGPNKVLRVIVE 102 (481)
T ss_pred cccCCCC----c------------------c-cC----------------------------------CCCCceEEEEEc
Confidence 2100000 0 0 00 000112379999
Q ss_pred CCCCCCCCHHHHHHHhcccCceEEEEEeeCC-CCeEEEEeCCHHHHHHHHHHhcCCeeCC--cEEEEEEecCCCCCC---
Q 013267 260 NLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-PDHALVQMGDGFQAELAVHFLKGALLFG--KRLEVNFSKHPNITQ--- 333 (446)
Q Consensus 260 nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-~g~afV~f~~~~~A~~A~~~lng~~~~g--~~l~v~~~~~~~~~~--- 333 (446)
||+. .+++++|+++|+.||.|.+|.++.+. .++|||+|.+.++|.+|++.|||..|.| +.|+|.|++......
T Consensus 103 nl~~-~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~ 181 (481)
T TIGR01649 103 NPMY-PITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYN 181 (481)
T ss_pred CCCC-CCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEec
Confidence 9994 79999999999999999999988764 4699999999999999999999999964 589999999866531
Q ss_pred CCCccccccCCcc-------------ccccc-----------------------------c------cc-----------
Q 013267 334 GADTHEYMNSNLN-------------RFNRN-----------------------------A------AK----------- 354 (446)
Q Consensus 334 ~~~~~~~~~~~~~-------------~~~~~-----------------------------~------~~----------- 354 (446)
+...+||+.+.+. ++... + ..
T Consensus 182 ~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
T TIGR01649 182 DDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLA 261 (481)
T ss_pred ccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccC
Confidence 2333444432220 00000 0 00
Q ss_pred ----c-ccccCCCccEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 013267 355 ----N-YRYCCSPTKMIHLSTLPQ-DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 428 (446)
Q Consensus 355 ----~-~~~~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g 428 (446)
. .....+++++|||+|||. .+|+++|+++|+.||.|.+++++.+ .+|+|||+|.+.++|..|++.|||..|.|
T Consensus 262 ~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g 340 (481)
T TIGR01649 262 PAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFG 340 (481)
T ss_pred ccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 0 001135788999999997 6999999999999999999999865 47999999999999999999999999999
Q ss_pred CeEEEEeecCccc
Q 013267 429 SIIRISFSQLQSI 441 (446)
Q Consensus 429 ~~l~v~~a~~~~~ 441 (446)
+.|+|++++.+..
T Consensus 341 ~~l~v~~s~~~~~ 353 (481)
T TIGR01649 341 KPLRVCPSKQQNV 353 (481)
T ss_pred ceEEEEEcccccc
Confidence 9999999987643
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.4e-38 Score=309.81 Aligned_cols=291 Identities=21% Similarity=0.261 Sum_probs=225.1
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceec-CeEeEEEecc
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIR-GRNVYVQFSS 79 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~-g~~i~v~~~~ 79 (446)
+.|||+|||++++|++|+++|++||+|.+|++++| +|||||+|.+.++|++|++.||+. .+. |+.|.|..+.
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~--~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNY--EIRPGRLLGVCISV 136 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCC--eecCCccccccccc
Confidence 78999999999999999999999999999999865 599999999999999999999987 564 7777776542
Q ss_pred cccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCc-eeEEEEE------ecCCceEEEEEecChhhHH
Q 013267 80 HQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGF-VEKIVTF------QKSAGFQALIQYQLRPSAV 152 (446)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~-i~~i~~~------~~~~g~~afv~f~~~~~A~ 152 (446)
. ..+|||+|||.++++++|.+.|++++. +.++.++ .+++|| |||+|.++++|.
T Consensus 137 ~-------------------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGF-AFVeF~s~edAa 196 (578)
T TIGR01648 137 D-------------------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGF-AFVEYESHRAAA 196 (578)
T ss_pred c-------------------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCce-EEEEcCCHHHHH
Confidence 1 134999999999999999999999964 4444443 256898 999999999999
Q ss_pred HHHHHhCCC--CCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccch
Q 013267 153 VARSSLQGR--NIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMA 230 (446)
Q Consensus 153 ~a~~~l~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (446)
.|+..|+.. .+.++ .|.|.|+.+.... + +
T Consensus 197 ~AirkL~~gki~l~Gr--~I~VdwA~p~~~~---------d---~----------------------------------- 227 (578)
T TIGR01648 197 MARRKLMPGRIQLWGH--VIAVDWAEPEEEV---------D---E----------------------------------- 227 (578)
T ss_pred HHHHHhhccceEecCc--eEEEEeecccccc---------c---c-----------------------------------
Confidence 999988643 34455 7788887633210 0 0
Q ss_pred hhhhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhccc--CceEEEEEeeCCCCeEEEEeCCHHHHHHHH
Q 013267 231 NAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLY--GNIIRIKLLRNKPDHALVQMGDGFQAELAV 308 (446)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~--G~v~~v~i~~~~~g~afV~f~~~~~A~~A~ 308 (446)
......++|||+||+. .+++++|+++|+.| |.|.+|+++ +++|||+|.+.++|.+|+
T Consensus 228 -----------------~~~~~~k~LfVgNL~~-~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 228 -----------------DVMAKVKILYVRNLMT-TTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred -----------------cccccccEEEEeCCCC-CCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHH
Confidence 0011234899999995 79999999999999 999999876 569999999999999999
Q ss_pred HHhcCCeeCCcEEEEEEecCCCCCCCCCccccccCCcccccc--ccccc-ccccCCCccEEEEeCCCCCCCHHHHHHHhh
Q 013267 309 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNR--NAAKN-YRYCCSPTKMIHLSTLPQDVTEEEIVSHLE 385 (446)
Q Consensus 309 ~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 385 (446)
+.|||..|.|+.|+|.|+++.....-. .+......+..+ ..... .....+++.+++++|++..++++.++++|.
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~~~~---~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~ 363 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKKSYV---RYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPR 363 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCccccc---ccccccCCCcccccccccccCcccCccccccccccccccccccchhhccc
Confidence 999999999999999999876432100 000000000000 00000 112445688999999999999999999999
Q ss_pred ccCCee
Q 013267 386 EHGSIV 391 (446)
Q Consensus 386 ~~G~v~ 391 (446)
.+|.|.
T Consensus 364 ~~g~~~ 369 (578)
T TIGR01648 364 MPGPIR 369 (578)
T ss_pred cCcccc
Confidence 998764
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=7.3e-38 Score=304.78 Aligned_cols=278 Identities=19% Similarity=0.252 Sum_probs=219.2
Q ss_pred ChhHHHHHHHhhccCCceecCeEeEEEecccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeE
Q 013267 50 DVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEK 129 (446)
Q Consensus 50 ~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~ 129 (446)
-.++|.+|+..+++. .+........|..+....... .+.....|||+|||+++++++|+++|++||.|.+
T Consensus 18 ~~~~a~~a~~~~~gy--~~~~~~g~r~~g~Pp~~~~~~--------~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~ 87 (578)
T TIGR01648 18 PDEAALKALLERTGY--TLVQENGQRKYGGPPPGWSGV--------QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYE 87 (578)
T ss_pred ccHHHHHHHHHhhCc--cccccCCcccCCCCCCcccCC--------CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEE
Confidence 468899999988877 555555555665443222111 1122345999999999999999999999999999
Q ss_pred EEEEe----cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCC
Q 013267 130 IVTFQ----KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP 205 (446)
Q Consensus 130 i~~~~----~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (446)
+.++. +++|| |||+|.+.++|++|++.|++..+..+. .|.+.++.
T Consensus 88 vrl~~D~sG~sRGf-aFV~F~~~e~A~~Ai~~lng~~i~~Gr-~l~V~~S~----------------------------- 136 (578)
T TIGR01648 88 LRLMMDFSGQNRGY-AFVTFCGKEEAKEAVKLLNNYEIRPGR-LLGVCISV----------------------------- 136 (578)
T ss_pred EEEEECCCCCccce-EEEEeCCHHHHHHHHHHcCCCeecCCc-cccccccc-----------------------------
Confidence 88763 68899 999999999999999999998775331 22332221
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCc-eEEE
Q 013267 206 SQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN-IIRI 284 (446)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~-v~~v 284 (446)
.+++|||+|||. .+++++|.+.|+.++. +..+
T Consensus 137 ----------------------------------------------~~~rLFVgNLP~-~~TeeeL~eeFskv~egvv~v 169 (578)
T TIGR01648 137 ----------------------------------------------DNCRLFVGGIPK-NKKREEILEEFSKVTEGVVDV 169 (578)
T ss_pred ----------------------------------------------cCceeEeecCCc-chhhHHHHHHhhcccCCceEE
Confidence 123899999995 7999999999999973 4555
Q ss_pred EEeeC------CCCeEEEEeCCHHHHHHHHHHhcC--CeeCCcEEEEEEecCCCCCCCCCccccccCCcccccccccccc
Q 013267 285 KLLRN------KPDHALVQMGDGFQAELAVHFLKG--ALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNY 356 (446)
Q Consensus 285 ~i~~~------~~g~afV~f~~~~~A~~A~~~lng--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (446)
.+... .+|+|||+|.+.++|..|++.|+. ..+.|+.|.|.|+.+.......
T Consensus 170 Iv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~--------------------- 228 (578)
T TIGR01648 170 IVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED--------------------- 228 (578)
T ss_pred EEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc---------------------
Confidence 44321 278999999999999999998864 4578999999998865311100
Q ss_pred cccCCCccEEEEeCCCCCCCHHHHHHHhhcc--CCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 357 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEH--GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 357 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
.....++|||+|||.++|+++|+++|+.| |.|++|+++ ++||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 229 --~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 229 --VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred --ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 11234789999999999999999999999 999999886 5799999999999999999999999999999999
Q ss_pred eecCcccc
Q 013267 435 FSQLQSIR 442 (446)
Q Consensus 435 ~a~~~~~~ 442 (446)
|+++...+
T Consensus 303 ~Akp~~~~ 310 (578)
T TIGR01648 303 LAKPVDKK 310 (578)
T ss_pred EccCCCcc
Confidence 99987654
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.8e-37 Score=274.20 Aligned_cols=287 Identities=17% Similarity=0.232 Sum_probs=226.3
Q ss_pred EEEEecChhHHHHHHHhhccCCceecCeEeEEEecccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcC
Q 013267 44 ALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123 (446)
Q Consensus 44 afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~ 123 (446)
+.-...+.|+|.+||.. --|..|.|+....+..-.+...... .+.+-.-|||+.||.++.|++|.-+|.+
T Consensus 37 ~~~~~~~~eaal~al~E-------~tgy~l~ve~gqrk~ggPpP~weg~---~p~~G~EVfvGkIPrD~~EdeLvplfEk 106 (506)
T KOG0117|consen 37 GVAGVQSEEAALKALLE-------RTGYTLVVENGQRKYGGPPPGWEGP---PPPRGCEVFVGKIPRDVFEDELVPLFEK 106 (506)
T ss_pred cccccccHHHHHHHHHH-------hcCceEEEeccccccCCCCCcccCC---CCCCCceEEecCCCccccchhhHHHHHh
Confidence 34444557888888763 3345666765433322111111111 0122233999999999999999999999
Q ss_pred CCceeEEEEEe-----cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCC
Q 013267 124 HGFVEKIVTFQ-----KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP 198 (446)
Q Consensus 124 ~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (446)
.|+|-++.++. .++|| |||.|.+.++|++|++.||+..|..+ ..|.+..+.
T Consensus 107 iG~I~elRLMmD~~sG~nRGY-AFVtf~~Ke~Aq~Aik~lnn~Eir~G-K~igvc~Sv---------------------- 162 (506)
T KOG0117|consen 107 IGKIYELRLMMDPFSGDNRGY-AFVTFCTKEEAQEAIKELNNYEIRPG-KLLGVCVSV---------------------- 162 (506)
T ss_pred ccceeeEEEeecccCCCCcce-EEEEeecHHHHHHHHHHhhCccccCC-CEeEEEEee----------------------
Confidence 99999988763 68999 99999999999999999999988643 244554432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhccc
Q 013267 199 AEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLY 278 (446)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~ 278 (446)
.+|.|||+|+| .+.++++|.+.+++.
T Consensus 163 -----------------------------------------------------an~RLFiG~IP-K~k~keeIlee~~kV 188 (506)
T KOG0117|consen 163 -----------------------------------------------------ANCRLFIGNIP-KTKKKEEILEEMKKV 188 (506)
T ss_pred -----------------------------------------------------ecceeEeccCC-ccccHHHHHHHHHhh
Confidence 13489999999 589999999999998
Q ss_pred C-ceEEEEEeeCC------CCeEEEEeCCHHHHHHHHHHhcC--CeeCCcEEEEEEecCCCCCCCCCccccccCCccccc
Q 013267 279 G-NIIRIKLLRNK------PDHALVQMGDGFQAELAVHFLKG--ALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFN 349 (446)
Q Consensus 279 G-~v~~v~i~~~~------~g~afV~f~~~~~A~~A~~~lng--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (446)
+ .|..|.|.... +|||||+|.+...|..|-+.|-. ..+.|+.+.|.|+.+........+.
T Consensus 189 teGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms----------- 257 (506)
T KOG0117|consen 189 TEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMS----------- 257 (506)
T ss_pred CCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhh-----------
Confidence 8 67777766533 88999999999999999988854 6679999999999987532221110
Q ss_pred ccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 013267 350 RNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 429 (446)
Q Consensus 350 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~ 429 (446)
.=+.|||+||+.++||+.|+++|++||.|++|+.+ +.||||.|.+.++|.+|++.+||+.|+|.
T Consensus 258 ------------~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~----rDYaFVHf~eR~davkAm~~~ngkeldG~ 321 (506)
T KOG0117|consen 258 ------------KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP----RDYAFVHFAEREDAVKAMKETNGKELDGS 321 (506)
T ss_pred ------------heeeeeeeccchhhhHHHHHHHHHhccceEEeecc----cceeEEeecchHHHHHHHHHhcCceecCc
Confidence 11589999999999999999999999999999998 44999999999999999999999999999
Q ss_pred eEEEEeecCccccccC
Q 013267 430 IIRISFSQLQSIRENS 445 (446)
Q Consensus 430 ~l~v~~a~~~~~~~~~ 445 (446)
.|.|++|||+..|.+.
T Consensus 322 ~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 322 PIEVTLAKPVDKKKKE 337 (506)
T ss_pred eEEEEecCChhhhccc
Confidence 9999999999887653
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.3e-36 Score=307.35 Aligned_cols=247 Identities=21% Similarity=0.301 Sum_probs=210.2
Q ss_pred EEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeC
Q 013267 102 LVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSN 176 (446)
Q Consensus 102 ~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~ 176 (446)
.|||+|||.++|+++|+++|++||.|.+|.+.+ +++|| |||+|.+.++|++|++.+++..+.++ +|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~-afV~F~~~~~A~~Al~~ln~~~i~gk--~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGY-GYVNFQNPADAERALETMNFKRLGGK--PIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCe--eEEeeccc
Confidence 389999999999999999999999999998864 56788 99999999999999999999989887 78888874
Q ss_pred CCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceE
Q 013267 177 LDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTV 256 (446)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (446)
... ... .....+|
T Consensus 79 ~~~----------------~~~---------------------------------------------------~~~~~~v 91 (562)
T TIGR01628 79 RDP----------------SLR---------------------------------------------------RSGVGNI 91 (562)
T ss_pred ccc----------------ccc---------------------------------------------------ccCCCce
Confidence 210 000 0011279
Q ss_pred EEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCC
Q 013267 257 LVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT 332 (446)
Q Consensus 257 ~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~ 332 (446)
||+|||. .+++++|+++|+.||.|.+|++..+. +|+|||+|.+.++|.+|++.+||..+.|+.|.|.........
T Consensus 92 fV~nLp~-~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 92 FVKNLDK-SVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHER 170 (562)
T ss_pred EEcCCCc-cCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccccc
Confidence 9999995 79999999999999999999998764 789999999999999999999999999999999865543211
Q ss_pred CCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeC
Q 013267 333 QGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFE 409 (446)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~ 409 (446)
.. ......++|||+|||.++|+++|+++|+.||.|.++.+..+. .+|||||+|.
T Consensus 171 ~~-----------------------~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~ 227 (562)
T TIGR01628 171 EA-----------------------APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFE 227 (562)
T ss_pred cc-----------------------ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEEC
Confidence 10 011234689999999999999999999999999999998653 3789999999
Q ss_pred CHHHHHHHHHHhCCCccC----CCeEEEEeecCcccc
Q 013267 410 TEEQATEALVCKHASSLG----GSIIRISFSQLQSIR 442 (446)
Q Consensus 410 ~~~~A~~A~~~l~~~~~~----g~~l~v~~a~~~~~~ 442 (446)
+.++|.+|++.+||..+. |+.|.|.+++.+..+
T Consensus 228 ~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 228 KHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAER 264 (562)
T ss_pred CHHHHHHHHHHhCCcEecccccceeeEeecccChhhh
Confidence 999999999999999999 999999999887655
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=252.89 Aligned_cols=263 Identities=19% Similarity=0.298 Sum_probs=214.6
Q ss_pred EEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCC
Q 013267 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177 (446)
Q Consensus 103 v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~ 177 (446)
++|.=||..+|+++++.+|+..|+|+.+.+++ .+-|| +||.|-+++||++|+..|||..+..+ +++|+|+.+
T Consensus 44 LIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGY-GFVNYv~p~DAe~AintlNGLrLQ~K--TIKVSyARP 120 (360)
T KOG0145|consen 44 LIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGY-GFVNYVRPKDAEKAINTLNGLRLQNK--TIKVSYARP 120 (360)
T ss_pred eeeeecccccCHHHHHHHhhcccceeeeeeeecccccccccc-ceeeecChHHHHHHHhhhcceeeccc--eEEEEeccC
Confidence 67888999999999999999999999999875 67889 99999999999999999999999888 889999875
Q ss_pred CceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEE
Q 013267 178 DELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVL 257 (446)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (446)
....++ ...||
T Consensus 121 Ss~~Ik---------------------------------------------------------------------~aNLY 131 (360)
T KOG0145|consen 121 SSDSIK---------------------------------------------------------------------DANLY 131 (360)
T ss_pred Chhhhc---------------------------------------------------------------------ccceE
Confidence 432111 11799
Q ss_pred EeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCc--EEEEEEecCCC
Q 013267 258 VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGK--RLEVNFSKHPN 330 (446)
Q Consensus 258 v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~--~l~v~~~~~~~ 330 (446)
|++|| .+++..||.++|++||.|+.-+|+.|. +|-+||+|+...+|..|+..|||..-.|. +|.|.|+...+
T Consensus 132 vSGlP-ktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 132 VSGLP-KTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred EecCC-ccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 99999 589999999999999999988887776 88999999999999999999999888774 89999988775
Q ss_pred CCCC--CCccccccCCcccc-------------------------cccc---------cccccccCCCccEEEEeCCCCC
Q 013267 331 ITQG--ADTHEYMNSNLNRF-------------------------NRNA---------AKNYRYCCSPTKMIHLSTLPQD 374 (446)
Q Consensus 331 ~~~~--~~~~~~~~~~~~~~-------------------------~~~~---------~~~~~~~~~~~~~l~v~nlp~~ 374 (446)
.... ....-|. ++..|+ .+|. ..+.......+++|||-||.++
T Consensus 211 q~t~~a~ls~ly~-sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd 289 (360)
T KOG0145|consen 211 QKTNQALLSQLYQ-SPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPD 289 (360)
T ss_pred cccchhhhHHhhc-CccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCC
Confidence 4211 0000000 011111 0110 0111223334789999999999
Q ss_pred CCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 375 VTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 375 ~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
++|.-|+++|.+||.|..|+++++-. ||||||.+.+-++|..|+..|||+.+++|.|.|+|...+
T Consensus 290 ~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 290 ADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred chHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999997622 889999999999999999999999999999999998764
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=273.02 Aligned_cols=237 Identities=21% Similarity=0.268 Sum_probs=201.8
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecc
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~ 79 (446)
.-|||+.||.++.|+||..+|.+.|+|-++++|.| ||||||+|.+.++|++|++.||+..+. .|+.|.|..|-
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~Sv 162 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVSV 162 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEee
Confidence 45999999999999999999999999999999987 599999999999999999999998432 68888888743
Q ss_pred cccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCce-eEEEEE------ecCCceEEEEEecChhhHH
Q 013267 80 HQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFV-EKIVTF------QKSAGFQALIQYQLRPSAV 152 (446)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i-~~i~~~------~~~~g~~afv~f~~~~~A~ 152 (446)
. -.||||+|+|.++++++|.+.+++.++= .+|.++ .+++|| |||+|.++.+|.
T Consensus 163 a-------------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGF-aFveYe~H~~Aa 222 (506)
T KOG0117|consen 163 A-------------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGF-AFVEYESHRAAA 222 (506)
T ss_pred e-------------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccce-EEEEeecchhHH
Confidence 3 2469999999999999999999998774 456555 388999 999999999999
Q ss_pred HHHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhh
Q 013267 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANA 232 (446)
Q Consensus 153 ~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (446)
.|...|..-.+.-....+.|.|+.+.... |
T Consensus 223 ~aRrKl~~g~~klwgn~~tVdWAep~~e~---------d----------------------------------------- 252 (506)
T KOG0117|consen 223 MARRKLMPGKIKLWGNAITVDWAEPEEEP---------D----------------------------------------- 252 (506)
T ss_pred HHHhhccCCceeecCCcceeeccCcccCC---------C-----------------------------------------
Confidence 99999866555444457899998754210 0
Q ss_pred hhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhc
Q 013267 233 AAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLK 312 (446)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~ln 312 (446)
......-..|||.||+ .++|++.|+.+|++||.|++|+.++| ||||.|.+.++|.+||+.+|
T Consensus 253 --------------ed~ms~VKvLYVRNL~-~~tTeE~lk~~F~~~G~veRVkk~rD---YaFVHf~eR~davkAm~~~n 314 (506)
T KOG0117|consen 253 --------------EDTMSKVKVLYVRNLM-ESTTEETLKKLFNEFGKVERVKKPRD---YAFVHFAEREDAVKAMKETN 314 (506)
T ss_pred --------------hhhhhheeeeeeeccc-hhhhHHHHHHHHHhccceEEeecccc---eeEEeecchHHHHHHHHHhc
Confidence 0001222389999999 48999999999999999999988755 99999999999999999999
Q ss_pred CCeeCCcEEEEEEecCCCC
Q 013267 313 GALLFGKRLEVNFSKHPNI 331 (446)
Q Consensus 313 g~~~~g~~l~v~~~~~~~~ 331 (446)
|..|.|..|.|.++++...
T Consensus 315 gkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 315 GKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred CceecCceEEEEecCChhh
Confidence 9999999999999998865
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.6e-35 Score=290.35 Aligned_cols=316 Identities=21% Similarity=0.313 Sum_probs=211.6
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
++++|||+|||.++++++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|+. +++. .+.|++|.|.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~--~~~g~~i~v~~ 164 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQ--MLLGRPIIVQS 164 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCC--EECCeeeEEee
Confidence 5789999999999999999999999999999999976 5899999999999999997 7777 89999999998
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHH
Q 013267 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAV 152 (446)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~ 152 (446)
+.................. .....|||+|||..+++++|+++|++||.|..|.+.. +++|| |||+|.+.++|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~-p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~-afV~f~~~e~A~ 242 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDI-PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGF-GFIQFHDAEEAK 242 (457)
T ss_pred cchhhhhhhhcccccCCCC-CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceE-EEEEECCHHHHH
Confidence 7543322211111111111 1135699999999999999999999999999988873 56788 999999999999
Q ss_pred HHHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCC-----cCCCCCCCCCCC--CCCCCCCCCCCC--CCCCCCC
Q 013267 153 VARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDF-----TNPNLPAEQKGR--PSQSGYSEAGGM--YAPGARA 223 (446)
Q Consensus 153 ~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~ 223 (446)
.|++.|+|..+.++ +|.|.|+........... ..... ............ .........+.. .+.....
T Consensus 243 ~A~~~l~g~~i~g~--~i~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (457)
T TIGR01622 243 EALEVMNGFELAGR--PIKVGYAQDSTYLLDAAN-TFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKI 319 (457)
T ss_pred HHHHhcCCcEECCE--EEEEEEccCCCccccchh-hhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchh
Confidence 99999999988776 889999763221111000 00000 000000000000 000000000000 0000000
Q ss_pred CCcccchhhhhhh--------------hccCCCCCCCCccCCCcceEEEeCCCCCCCC----------HHHHHHHhcccC
Q 013267 224 VAFPQMANAAAIA--------------AAFGGGLPPGITGTNDRCTVLVSNLNSDRID----------EDKLFNLFSLYG 279 (446)
Q Consensus 224 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~----------~~~l~~~F~~~G 279 (446)
..++......... .+.....+. .....++.+|+|.|+-. ..+ .++|++.|++||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~n~~~-~~~~~~~~~~~~~~~dv~~e~~k~G 397 (457)
T TIGR01622 320 ALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPS-TNNNLATTCLVLSNMFD-PATEEEPNFDNEILDDVKEECSKYG 397 (457)
T ss_pred hhhccccccccccccccccccccccccccCCCCCCc-ccCCCCCcEEEEecCCC-CcccccchHHHHHHHHHHHHHHhcC
Confidence 0000000000000 000001111 11234567999999963 222 358999999999
Q ss_pred ceEEEEEee-CCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 280 NIIRIKLLR-NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 280 ~v~~v~i~~-~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
.|..|.+.. ...|++||+|.+.++|..|++.|||..|+|+.|.+.|....
T Consensus 398 ~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 398 GVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred CeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 999998874 33899999999999999999999999999999999997643
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=270.49 Aligned_cols=405 Identities=18% Similarity=0.216 Sum_probs=265.0
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecc
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~ 79 (446)
.+|||++||.+++.++|.++|+.+|+|..|.++.+ |||+||+|.-.||+++|+...++. .+.|+.|.|.++.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~--kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQS--KFEGRILNVDPAK 83 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcC--cccceeccccccc
Confidence 68999999999999999999999999999999876 489999999999999999999988 8999999999987
Q ss_pred cccccc-cccCCCC-------C-----CCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe----cCCceEEE
Q 013267 80 HQELTT-MEQNAQG-------R-----GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ----KSAGFQAL 142 (446)
Q Consensus 80 ~~~~~~-~~~~~~~-------~-----~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~----~~~g~~af 142 (446)
+..... ....... + .....+-.+|+|.|||+.+.+.+|..+|+.||.|..|.+-+ +..|| ||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGF-aF 162 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGF-AF 162 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccce-EE
Confidence 654333 1111000 0 00012246799999999999999999999999999999864 55688 99
Q ss_pred EEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCCceeeeeC--------------------CCcccCCcCCCCCCCCC
Q 013267 143 IQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYN--------------------NERSRDFTNPNLPAEQK 202 (446)
Q Consensus 143 v~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 202 (446)
|+|....+|..|++.+|+..|.|+ ++.|.|+-....-.... .+...+...-.. ....
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i~gR--~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~-e~d~ 239 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKIDGR--PVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDG-EEDS 239 (678)
T ss_pred EEEeeHHHHHHHHHhccCceecCc--eeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcc-cccc
Confidence 999999999999999999999998 88999997664321100 000000000000 0000
Q ss_pred CCCCCCCC-CCCCCCC-CCCCCCCCcccc---hhhhhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcc
Q 013267 203 GRPSQSGY-SEAGGMY-APGARAVAFPQM---ANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSL 277 (446)
Q Consensus 203 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~ 277 (446)
...--... .....-. ....-....... +....-..+..... ........+|||.||| +.+++++|++.|++
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~---~en~~~~~tVFvRNL~-fD~tEEel~~~fsk 315 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTT---RENITEGKTVFVRNLP-FDTTEEELKEHFSK 315 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccc---cccccccceEEEecCC-ccccHHHHHHHHHh
Confidence 00000000 0000000 000000000000 00000000000000 0112234799999999 57999999999999
Q ss_pred cCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHh-----cC-CeeCCcEEEEEEecCCCCCC---------C--C
Q 013267 278 YGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFL-----KG-ALLFGKRLEVNFSKHPNITQ---------G--A 335 (446)
Q Consensus 278 ~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l-----ng-~~~~g~~l~v~~~~~~~~~~---------~--~ 335 (446)
||.|..+.++.++ +|+|||.|.+..+|+.||... .| ..+.||.|+|..+-...... . +
T Consensus 316 FG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~g 395 (678)
T KOG0127|consen 316 FGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKG 395 (678)
T ss_pred hccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCC
Confidence 9999999988865 889999999999999999977 24 77899999999876554310 0 0
Q ss_pred Cccccc-cCCccccccccc----------------------ccccccCCCccEEEEeCCCCCCCHHHHHHHhhc-----c
Q 013267 336 DTHEYM-NSNLNRFNRNAA----------------------KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEE-----H 387 (446)
Q Consensus 336 ~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-----~ 387 (446)
...-|. +...-+...+.+ +| ++.--..+.|.|.|||..++..+|..+... -
T Consensus 396 krNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lkn-pnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~a 474 (678)
T KOG0127|consen 396 KRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKLKN-PNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFA 474 (678)
T ss_pred ccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhhcC-CceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhh
Confidence 000010 111111111111 11 112223457889999999999999988743 2
Q ss_pred CCeeEE-EEE-------eeCCceEEEEEeCCHHHHHHHHHHh
Q 013267 388 GSIVNT-KLF-------EMNGKKQALVLFETEEQATEALVCK 421 (446)
Q Consensus 388 G~v~~~-~i~-------~~~~~g~~fV~f~~~~~A~~A~~~l 421 (446)
+.+..+ +.+ .+-+.||+|+.|...+.|.+|++.+
T Consensus 475 t~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 475 TKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred hhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 333222 222 1123889999999999999999877
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=6e-34 Score=277.62 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=139.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
..++|||+|||.++++++|+++|++||+|.+|.++.| +|||||+|.+.++|.+|++.+|+. .++|++|+|.+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~--~i~GR~IkV~r 183 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 183 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCe--EEecceeeecc
Confidence 3468999999999999999999999999999999865 599999999999999999999998 89999999986
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHH
Q 013267 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAV 152 (446)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~ 152 (446)
........... ...........+|||+||++++++++|+++|+.||.|..+.+.+ +++|| |||+|.+.++|.
T Consensus 184 p~~~p~a~~~~--~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGf-GFVeFe~~e~A~ 260 (612)
T TIGR01645 184 PSNMPQAQPII--DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGY-GFIEYNNLQSQS 260 (612)
T ss_pred ccccccccccc--ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCe-EEEEECCHHHHH
Confidence 43221110000 00011123345799999999999999999999999999988864 57898 999999999999
Q ss_pred HHHHHhCCCCCCCCCceEEEeeeCC
Q 013267 153 VARSSLQGRNIYDGCCQLDIQFSNL 177 (446)
Q Consensus 153 ~a~~~l~~~~~~~~~~~l~v~~~~~ 177 (446)
+|++.||+..+.|+ .|+|.++..
T Consensus 261 kAI~amNg~elgGr--~LrV~kAi~ 283 (612)
T TIGR01645 261 EAIASMNLFDLGGQ--YLRVGKCVT 283 (612)
T ss_pred HHHHHhCCCeeCCe--EEEEEecCC
Confidence 99999999999887 788887764
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=3.7e-34 Score=287.20 Aligned_cols=294 Identities=15% Similarity=0.206 Sum_probs=202.9
Q ss_pred CcEEEEEEcCCCCCcCHHHHHHhhcCC------------CceeEEEEEecCCceEEEEEecChhhHHHHHHHhCCCCCCC
Q 013267 98 NRILLVTIHHMLYPITVEVLHQVFSPH------------GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYD 165 (446)
Q Consensus 98 ~~~~~v~v~nl~~~~t~~~l~~~f~~~------------G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~ 165 (446)
....+|||+|||+.+|+++|+++|+.+ +.|..+. ..+.+|| |||+|.+.++|..|+ .|+|..+.+
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~-~~~~kg~-afVeF~~~e~A~~Al-~l~g~~~~g 249 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN-INKEKNF-AFLEFRTVEEATFAM-ALDSIIYSN 249 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE-ECCCCCE-EEEEeCCHHHHhhhh-cCCCeEeeC
Confidence 344579999999999999999999874 2333333 3567898 999999999999999 599998887
Q ss_pred CCceEEEeeeCCCceeeeeCCCcccCCcCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCC
Q 013267 166 GCCQLDIQFSNLDELQVNYNNERSRDFTNP-NLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLP 244 (446)
Q Consensus 166 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (446)
. +|.|.... ++... ......... .+... .. .... ..
T Consensus 250 ~--~l~v~r~~--------------~~~~~~~~~~~~~~~--~~~~~--------------~~----------~~~~-~~ 286 (509)
T TIGR01642 250 V--FLKIRRPH--------------DYIPVPQITPEVSQK--NPDDN--------------AK----------NVEK-LV 286 (509)
T ss_pred c--eeEecCcc--------------ccCCccccCCCCCCC--CCccc--------------cc----------cccc-cc
Confidence 6 56664321 11100 000000000 00000 00 0000 00
Q ss_pred CCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCc
Q 013267 245 PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGK 319 (446)
Q Consensus 245 ~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~ 319 (446)
.........++|||+|||. .+++++|+++|+.||.|..+.++.+. +|+|||+|.+.++|..|++.|||..|+|+
T Consensus 287 ~~~~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 287 NSTTVLDSKDRIYIGNLPL-YLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN 365 (509)
T ss_pred ccccCCCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 0000123345899999995 79999999999999999999988753 78999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCCCccccccCCcccccccccc-c-ccccCCCccEEEEeCCCCCC----------CHHHHHHHhhcc
Q 013267 320 RLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAK-N-YRYCCSPTKMIHLSTLPQDV----------TEEEIVSHLEEH 387 (446)
Q Consensus 320 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~v~nlp~~~----------t~~~l~~~F~~~ 387 (446)
.|.|.++................ +.. ....... . ......|+++|+|.|+...- ..++|+++|+.|
T Consensus 366 ~l~v~~a~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~ 443 (509)
T TIGR01642 366 KLHVQRACVGANQATIDTSNGMA-PVT-LLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKY 443 (509)
T ss_pred EEEEEECccCCCCCCcccccccc-ccc-cccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhc
Confidence 99999987554322111000000 000 0000000 0 01123578899999996421 236899999999
Q ss_pred CCeeEEEEEee-------CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 388 GSIVNTKLFEM-------NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 388 G~v~~~~i~~~-------~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
|.|.+|+|+.. .+.|+|||+|.++++|.+|+..|||..|.|+.|.|+|.....
T Consensus 444 G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 444 GPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDC 503 (509)
T ss_pred CCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHH
Confidence 99999999853 236899999999999999999999999999999999987543
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.5e-33 Score=278.87 Aligned_cols=279 Identities=20% Similarity=0.263 Sum_probs=208.2
Q ss_pred EEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEee
Q 013267 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174 (446)
Q Consensus 100 ~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~ 174 (446)
...|||+|||..+++++|+++|++||.|..|.++. +++|| |||+|.+.++|.+|++ |+|..+.+. +|.+.+
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~-afVeF~~~e~A~~Al~-l~g~~~~g~--~i~v~~ 164 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGV-AYVEFYDVESVIKALA-LTGQMLLGR--PIIVQS 164 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceE-EEEEECCHHHHHHHHH-hCCCEECCe--eeEEee
Confidence 45699999999999999999999999999998874 57898 9999999999999996 899999887 566655
Q ss_pred eCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcc
Q 013267 175 SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRC 254 (446)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (446)
+..... .... .. . . ..+ ..+.++
T Consensus 165 ~~~~~~---------~~~~---~~--~-----------~-------------------------~~~-------~~p~~~ 187 (457)
T TIGR01622 165 SQAEKN---------RAAK---AA--T-----------H-------------------------QPG-------DIPNFL 187 (457)
T ss_pred cchhhh---------hhhh---cc--c-----------c-------------------------cCC-------CCCCCC
Confidence 431100 0000 00 0 0 000 011245
Q ss_pred eEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
+|||+|||. .+++++|+++|+.||.|..|.+..+. +|+|||+|.+.++|..|+..|||..+.|+.|+|.|+...
T Consensus 188 ~l~v~nl~~-~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 188 KLYVGNLHF-NITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred EEEEcCCCC-CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 999999995 79999999999999999999998754 689999999999999999999999999999999997633
Q ss_pred CCCCCC------------Cccc-----------------------cccC--------Ccccc-----ccc------c---
Q 013267 330 NITQGA------------DTHE-----------------------YMNS--------NLNRF-----NRN------A--- 352 (446)
Q Consensus 330 ~~~~~~------------~~~~-----------------------~~~~--------~~~~~-----~~~------~--- 352 (446)
...... .... +... ...+. ..+ .
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (457)
T TIGR01622 267 TYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAI 346 (457)
T ss_pred CccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccccc
Confidence 211000 0000 0000 00000 000 0
Q ss_pred -ccc----ccccCCCccEEEEeCCCCCCC----------HHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHH
Q 013267 353 -AKN----YRYCCSPTKMIHLSTLPQDVT----------EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEA 417 (446)
Q Consensus 353 -~~~----~~~~~~~~~~l~v~nlp~~~t----------~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A 417 (446)
..+ ......++++|+|.||....+ .+||++.|++||.|+++.+......|++||+|.++++|.+|
T Consensus 347 ~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A 426 (457)
T TIGR01622 347 MARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAA 426 (457)
T ss_pred ccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHH
Confidence 000 001234678999999965443 37899999999999999998666789999999999999999
Q ss_pred HHHhCCCccCCCeEEEEeecCcc
Q 013267 418 LVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 418 ~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
++.|||..++|+.|.++|.....
T Consensus 427 ~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 427 FQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHhcCcccCCeEEEEEEEcHHH
Confidence 99999999999999999987654
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=3.5e-34 Score=287.36 Aligned_cols=280 Identities=17% Similarity=0.228 Sum_probs=202.0
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCc------------cceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceec
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPF------------GVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIR 69 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~------------G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~ 69 (446)
+..+++|||+|||.++|+++|+++|..+ ++|..+.+.+++|||||+|.+.++|..||. |++. .+.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~--~~~ 248 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSI--IYS 248 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCe--Eee
Confidence 4568999999999999999999999863 467788888899999999999999999995 8887 899
Q ss_pred CeEeEEEeccccc-cccc-----cc--CCC--------CCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEE
Q 013267 70 GRNVYVQFSSHQE-LTTM-----EQ--NAQ--------GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF 133 (446)
Q Consensus 70 g~~i~v~~~~~~~-~~~~-----~~--~~~--------~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~ 133 (446)
|++|.|....... .... .. ... ...........|||+|||..+++++|+++|+.||.|..+.++
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 328 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI 328 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 9999997432211 0000 00 000 000011233569999999999999999999999999988876
Q ss_pred e-----cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCC
Q 013267 134 Q-----KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQS 208 (446)
Q Consensus 134 ~-----~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (446)
. .++|| |||+|.+.++|..|++.|+|..+.++ .|.|.++......... + ......
T Consensus 329 ~~~~~g~~~g~-afv~f~~~~~a~~A~~~l~g~~~~~~--~l~v~~a~~~~~~~~~------~-------~~~~~~---- 388 (509)
T TIGR01642 329 KDIATGLSKGY-AFCEYKDPSVTDVAIAALNGKDTGDN--KLHVQRACVGANQATI------D-------TSNGMA---- 388 (509)
T ss_pred ecCCCCCcCeE-EEEEECCHHHHHHHHHHcCCCEECCe--EEEEEECccCCCCCCc------c-------cccccc----
Confidence 4 47898 99999999999999999999999887 7788887532211000 0 000000
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEEEeCCCC-C-CCC-------HHHHHHHhcccC
Q 013267 209 GYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNS-D-RID-------EDKLFNLFSLYG 279 (446)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~-~-~~~-------~~~l~~~F~~~G 279 (446)
.. ....+.. .. .... ....++.+|+|.|+.. + .++ .++|+++|+.||
T Consensus 389 ----~~--------~~~~~~~-----~~----~~~~---~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G 444 (509)
T TIGR01642 389 ----PV--------TLLAKAL-----SQ----SILQ---IGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG 444 (509)
T ss_pred ----cc--------ccccccc-----hh----hhcc---ccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC
Confidence 00 0000000 00 0000 0123456999999972 1 111 257999999999
Q ss_pred ceEEEEEeeCC--------CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecC
Q 013267 280 NIIRIKLLRNK--------PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 328 (446)
Q Consensus 280 ~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~ 328 (446)
.|..|.|+.+. .|+|||+|.+.++|..|+..|||..|.|+.|.+.|...
T Consensus 445 ~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 445 PLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred CeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 99999998642 47999999999999999999999999999999999764
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-34 Score=243.28 Aligned_cols=231 Identities=19% Similarity=0.310 Sum_probs=186.8
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccccc
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL 83 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~ 83 (446)
.-|+|||+||..++||+-|..+|++.|+|.+|+|+.+ .++|.++...
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------e~~v~wa~~p-- 51 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------ELKVNWATAP-- 51 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------hhccccccCc--
Confidence 4589999999999999999999999999999999988 2334443222
Q ss_pred cccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHHHHHHHh
Q 013267 84 TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAVVARSSL 158 (446)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~~a~~~l 158 (446)
...+....++-+++||+.|...++.++|++.|.+||+|.++.+++ +++|| +||.|-+.++|+.|++.|
T Consensus 52 ------~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGY-gFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 52 ------GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGY-GFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ------ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccce-eEEeccchHHHHHHHHHh
Confidence 011111234467799999999999999999999999999988875 89999 999999999999999999
Q ss_pred CCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhc
Q 013267 159 QGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAA 238 (446)
Q Consensus 159 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (446)
+|.=+..+ .||..|+..+.... ..+ .+. +...
T Consensus 125 nGqWlG~R--~IRTNWATRKp~e~------n~~----~lt---------------------------fdeV--------- 156 (321)
T KOG0148|consen 125 NGQWLGRR--TIRTNWATRKPSEM------NGK----PLT---------------------------FDEV--------- 156 (321)
T ss_pred CCeeeccc--eeeccccccCcccc------CCC----Ccc---------------------------HHHH---------
Confidence 99877666 88999986332000 000 000 0000
Q ss_pred cCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCC
Q 013267 239 FGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFG 318 (446)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g 318 (446)
=..+.+.+|+||++|++. .+++++|++.|+.||.|..|+++++ +||+||+|++.|.|.+||..+||..++|
T Consensus 157 -------~NQssp~NtsVY~G~I~~-~lte~~mr~~Fs~fG~I~EVRvFk~-qGYaFVrF~tkEaAahAIv~mNntei~G 227 (321)
T KOG0148|consen 157 -------YNQSSPDNTSVYVGNIAS-GLTEDLMRQTFSPFGPIQEVRVFKD-QGYAFVRFETKEAAAHAIVQMNNTEIGG 227 (321)
T ss_pred -------hccCCCCCceEEeCCcCc-cccHHHHHHhcccCCcceEEEEecc-cceEEEEecchhhHHHHHHHhcCceeCc
Confidence 001256788999999996 6999999999999999999999998 9999999999999999999999999999
Q ss_pred cEEEEEEecCCCC
Q 013267 319 KRLEVNFSKHPNI 331 (446)
Q Consensus 319 ~~l~v~~~~~~~~ 331 (446)
..+++.|.+....
T Consensus 228 ~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 228 QLVRCSWGKEGDD 240 (321)
T ss_pred eEEEEeccccCCC
Confidence 9999999997754
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.8e-33 Score=251.70 Aligned_cols=163 Identities=20% Similarity=0.312 Sum_probs=140.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecC--eEeEEE
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRG--RNVYVQ 76 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g--~~i~v~ 76 (446)
+-.+||+.||+.|||.||+++|++||.|.+|.+++|| |||||.|.+.++|.+|+++||+.. .+-| ++|.|.
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~k-tlpG~~~pvqvk 112 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQK-TLPGMHHPVQVK 112 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhccc-ccCCCCcceeec
Confidence 3468999999999999999999999999999999996 999999999999999999999862 3444 488999
Q ss_pred ecccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe----cCCceEEEEEecChhhHH
Q 013267 77 FSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ----KSAGFQALIQYQLRPSAV 152 (446)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~----~~~g~~afv~f~~~~~A~ 152 (446)
|++.+...... ...|||+-|++..||.+++++|++||.|+++.+++ .++|+ |||+|.+.+.|.
T Consensus 113 ~Ad~E~er~~~------------e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGc-aFV~fstke~A~ 179 (510)
T KOG0144|consen 113 YADGERERIVE------------ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGC-AFVKFSTKEMAV 179 (510)
T ss_pred ccchhhhcccc------------chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccce-eEEEEehHHHHH
Confidence 98765443211 12389999999999999999999999999999875 78998 999999999999
Q ss_pred HHHHHhCCCCC-CCCCceEEEeeeCCCcee
Q 013267 153 VARSSLQGRNI-YDGCCQLDIQFSNLDELQ 181 (446)
Q Consensus 153 ~a~~~l~~~~~-~~~~~~l~v~~~~~~~~~ 181 (446)
.|++.|||..- .|...+|.|.|++.....
T Consensus 180 ~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 180 AAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred HHHHhhccceeeccCCCceEEEecccCCCc
Confidence 99999998765 455689999999987654
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=4.1e-33 Score=264.67 Aligned_cols=368 Identities=18% Similarity=0.221 Sum_probs=260.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccccc
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELT 84 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~ 84 (446)
+-.|||+|||+..+|+||+.+| |||.|...+.|.+|-..+.+. .+.|+-++|-.+......
T Consensus 227 tgrlf~RNLpyt~~eed~~~lf-----------------a~v~~~~~~~avka~~~~D~k--~fqgrmlhvlp~~~k~~~ 287 (725)
T KOG0110|consen 227 TGRLFVRNLPYTSTEEDLLKLF-----------------AFVTFMFPEHAVKAYSELDGK--VFQGRMLHVLPSKEKSTA 287 (725)
T ss_pred hhhhhhccCCccccHHHHHHhh-----------------HHHhhhhhHHHHhhhhhcccc--ccccceeeecCcchhhhh
Confidence 3469999999999999999999 999999999999999999988 899999998765443222
Q ss_pred c------------------ccc------CCCC--------------------------CCCC------------------
Q 013267 85 T------------------MEQ------NAQG--------------------------RGDE------------------ 96 (446)
Q Consensus 85 ~------------------~~~------~~~~--------------------------~~~~------------------ 96 (446)
. +.. ++.- ..+.
T Consensus 288 ~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~~ 367 (725)
T KOG0110|consen 288 KEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRRF 367 (725)
T ss_pred hhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhhh
Confidence 1 000 0000 0000
Q ss_pred --------------CCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhhHHHHHHHhCCCC
Q 013267 97 --------------PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRN 162 (446)
Q Consensus 97 --------------~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~~~~ 162 (446)
...-..++|+|+|..+..++|..+|..||.|.++.+ + ..|..|+|+|.++.+|..|+..|....
T Consensus 368 ~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvll-p-~~G~~aiv~fl~p~eAr~Afrklaysr 445 (725)
T KOG0110|consen 368 FEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLL-P-PGGTGAIVEFLNPLEARKAFRKLAYSR 445 (725)
T ss_pred HHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeec-C-cccceeeeeecCccchHHHHHHhchhh
Confidence 011134789999999999999999999999999954 4 345459999999999999999999877
Q ss_pred CCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 013267 163 IYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNL------PAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIA 236 (446)
Q Consensus 163 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (446)
+... ++.+.|+.........+. .+...... +.........+-..+..+. ..
T Consensus 446 ~k~~--plyle~aP~dvf~~~pka---~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~t--------e~---------- 502 (725)
T KOG0110|consen 446 FKSA--PLYLEWAPEDVFTEDPKA---DDLSAESRSKMEENPSERVSAEDGQVEEDKDPT--------EE---------- 502 (725)
T ss_pred hccC--ccccccChhhhccCCccc---cccccccccccccCcceecccccccccccCCcc--------cc----------
Confidence 7544 777888765443311000 00000000 0000000000000000000 00
Q ss_pred hccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC--------CCeEEEEeCCHHHHHHHH
Q 013267 237 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--------PDHALVQMGDGFQAELAV 308 (446)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~ 308 (446)
...+..-......+.|||.||+. ..+.++|...|...|.|.++.|...+ .|+|||+|.+.++|+.|+
T Consensus 503 ----ss~a~~a~~~~~~t~lfvkNlnf-~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~ 577 (725)
T KOG0110|consen 503 ----SSLARVAEDEETETKLFVKNLNF-DTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAAL 577 (725)
T ss_pred ----ccchhhhhccccchhhhhhcCCc-ccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHH
Confidence 00000000011122499999994 79999999999999999999776532 389999999999999999
Q ss_pred HHhcCCeeCCcEEEEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccC
Q 013267 309 HFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG 388 (446)
Q Consensus 309 ~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G 388 (446)
+.|+|+.+.|+.|.|.++..... ....++. ..-.....|+|+|||+..+..+++++|..||
T Consensus 578 k~lqgtvldGH~l~lk~S~~k~~--~~~gK~~-----------------~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG 638 (725)
T KOG0110|consen 578 KALQGTVLDGHKLELKISENKPA--STVGKKK-----------------SKKKKGTKILVRNIPFEATKREVRKLFTAFG 638 (725)
T ss_pred HHhcCceecCceEEEEeccCccc--ccccccc-----------------ccccccceeeeeccchHHHHHHHHHHHhccc
Confidence 99999999999999999883211 1100000 0111246899999999999999999999999
Q ss_pred CeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 389 SIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 389 ~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.+.+|+|+...+ +|||||.|-++++|..|+..|.+..+-||+|.++||+...
T Consensus 639 qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 639 QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred ceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 999999985422 8899999999999999999999999999999999998754
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-33 Score=250.79 Aligned_cols=273 Identities=17% Similarity=0.287 Sum_probs=218.3
Q ss_pred CcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHHHHHHHhCCCC-CCCCCceEE
Q 013267 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAVVARSSLQGRN-IYDGCCQLD 171 (446)
Q Consensus 98 ~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~~a~~~l~~~~-~~~~~~~l~ 171 (446)
...+.+||+-+|..|+|.||+++|++||.|.+|.+.+ .++|+ +||.|.+.++|.+|+..|++.. +.|...+|.
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gc-CFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGC-CFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccce-EEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4566799999999999999999999999999999874 67888 9999999999999999997655 555678999
Q ss_pred EeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCC
Q 013267 172 IQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTN 251 (446)
Q Consensus 172 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (446)
+.+++...-+. .
T Consensus 111 vk~Ad~E~er~--------------------------------------------------------------------~ 122 (510)
T KOG0144|consen 111 VKYADGERERI--------------------------------------------------------------------V 122 (510)
T ss_pred ecccchhhhcc--------------------------------------------------------------------c
Confidence 99986332110 1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcC-CeeCCc--EEEEE
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKG-ALLFGK--RLEVN 324 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng-~~~~g~--~l~v~ 324 (446)
..+.|||+.|+ ..++|.|++++|++||.|++|.|+++. +|||||+|.+.+.|..||+.||| ..+.|+ +|.|.
T Consensus 123 ~e~KLFvg~ls-K~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLS-KQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhcc-ccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 12279999999 589999999999999999999999976 89999999999999999999999 556774 99999
Q ss_pred EecCCCCCCCCCc-------------------------------------------ccccc-------------------
Q 013267 325 FSKHPNITQGADT-------------------------------------------HEYMN------------------- 342 (446)
Q Consensus 325 ~~~~~~~~~~~~~-------------------------------------------~~~~~------------------- 342 (446)
|+..+.......- ..+..
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 9988865220000 00000
Q ss_pred -----------CCcc----cccc-cc-----------------c-----------------ccc----------------
Q 013267 343 -----------SNLN----RFNR-NA-----------------A-----------------KNY---------------- 356 (446)
Q Consensus 343 -----------~~~~----~~~~-~~-----------------~-----------------~~~---------------- 356 (446)
+... ...+ +. + .++
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence 0000 0000 00 0 000
Q ss_pred --------------------------------------------------------cccCCCccEEEEeCCCCCCCHHHH
Q 013267 357 --------------------------------------------------------RYCCSPTKMIHLSTLPQDVTEEEI 380 (446)
Q Consensus 357 --------------------------------------------------------~~~~~~~~~l~v~nlp~~~t~~~l 380 (446)
...++.+..+||.+||.+.-+.||
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 345567789999999999999999
Q ss_pred HHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 381 VSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 381 ~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
...|..||.|.+.+++-++- ++|+||.|++..+|..||..|||+++++++|+|...+.+.
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 99999999999999985543 7899999999999999999999999999999999988764
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-33 Score=233.06 Aligned_cols=171 Identities=22% Similarity=0.395 Sum_probs=149.6
Q ss_pred eEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
.+||+-|.+ .++-++|++.|.+||.|.+++|++|- |||+||.|.+.++|..||+.|||..|++|.|+-.|+..+
T Consensus 64 hvfvgdls~-eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 64 HVFVGDLSP-EIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eEEehhcch-hcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 799999998 59999999999999999999999875 899999999999999999999999999999999999988
Q ss_pred CCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeC
Q 013267 330 NITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFE 409 (446)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~ 409 (446)
..+++.....|.. + +....+.+++||++|++...||++|++.|++||.|.+|++++ .+||+||.|+
T Consensus 143 p~e~n~~~ltfde----------V--~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~ 208 (321)
T KOG0148|consen 143 PSEMNGKPLTFDE----------V--YNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFE 208 (321)
T ss_pred ccccCCCCccHHH----------H--hccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec--ccceEEEEec
Confidence 6433322211110 0 112334568999999999999999999999999999999994 6999999999
Q ss_pred CHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 410 TEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 410 ~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
+.|+|.+||..+|+..+.|..++++|.|...
T Consensus 209 tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 209 TKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred chhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 9999999999999999999999999998754
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7e-31 Score=241.59 Aligned_cols=291 Identities=20% Similarity=0.323 Sum_probs=210.5
Q ss_pred EEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeee
Q 013267 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (446)
Q Consensus 101 ~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~ 175 (446)
..|||++||++++.++|.++|+.+|+|..+.+.. .++|| +||.|.-.+|+++|++.+++..+.|+ .|.+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGf-gfVtFam~ED~qrA~~e~~~~kf~Gr--~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGF-GFVTFAMEEDVQRALAETEQSKFEGR--ILNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCc-cceeeehHhHHHHHHHHhhcCcccce--ecccccc
Confidence 4599999999999999999999999999988763 67899 99999999999999999999889877 6677666
Q ss_pred CCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcce
Q 013267 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCT 255 (446)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (446)
................... +.... .|.--....+-..
T Consensus 83 ~~R~r~e~~~~~e~~~veK---~~~q~----------------------------------------~~~k~~v~~~k~r 119 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEK---PIEQK----------------------------------------RPTKAKVDLPKWR 119 (678)
T ss_pred cccccchhcccccchhhhc---ccccC----------------------------------------CcchhhccCccce
Confidence 5443221100000000000 00000 0000000111228
Q ss_pred EEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCC
Q 013267 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 331 (446)
Q Consensus 256 l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~ 331 (446)
|.|.|||. .+.+++|..+|+.||.|..|.|+... .|||||.|.+..+|..|++.+||..|.||+|-|.|+-++..
T Consensus 120 LIIRNLPf-~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 120 LIIRNLPF-KCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred EEeecCCc-ccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 99999995 79999999999999999999998754 67999999999999999999999999999999999877653
Q ss_pred CC-----------------------CCCcccccc------------------------CCcc----------cccccccc
Q 013267 332 TQ-----------------------GADTHEYMN------------------------SNLN----------RFNRNAAK 354 (446)
Q Consensus 332 ~~-----------------------~~~~~~~~~------------------------~~~~----------~~~~~~~~ 354 (446)
=. .....++.. +... ...++..+
T Consensus 199 ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k 278 (678)
T KOG0127|consen 199 YEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDK 278 (678)
T ss_pred ccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccc
Confidence 00 000000000 0000 00000000
Q ss_pred cc-----cccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHh----
Q 013267 355 NY-----RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCK---- 421 (446)
Q Consensus 355 ~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l---- 421 (446)
+. +....-+.+|||+|||+++|+++|...|+.||.|.++.+..++ .+|.|||.|.+..+|..||+..
T Consensus 279 ~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~ 358 (678)
T KOG0127|consen 279 KAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPAS 358 (678)
T ss_pred hhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccC
Confidence 00 1122335899999999999999999999999999999887554 3889999999999999999887
Q ss_pred -CC-CccCCCeEEEEeecC
Q 013267 422 -HA-SSLGGSIIRISFSQL 438 (446)
Q Consensus 422 -~~-~~~~g~~l~v~~a~~ 438 (446)
-| ..|.||.|+|..+=.
T Consensus 359 e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 359 EDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred CCceEEEeccEEeeeeccc
Confidence 23 678899999988744
No 28
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=5.4e-29 Score=231.63 Aligned_cols=164 Identities=20% Similarity=0.356 Sum_probs=144.8
Q ss_pred cCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEE
Q 013267 249 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 323 (446)
Q Consensus 249 ~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v 323 (446)
.....++|||+|||+ .+++++|+++|+.||.|++|+|+.+. +|||||+|.+.++|.+|++.|||..+.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~-~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQ-DMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345678999999996 69999999999999999999998764 589999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----
Q 013267 324 NFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---- 399 (446)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---- 399 (446)
.|+++... ....++|||+|||..+|+++|+++|++||.|++++++.++
T Consensus 182 ~~a~p~~~----------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~ 233 (346)
T TIGR01659 182 SYARPGGE----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGT 233 (346)
T ss_pred eccccccc----------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCc
Confidence 99875310 0123589999999999999999999999999999998653
Q ss_pred CceEEEEEeCCHHHHHHHHHHhCCCccCC--CeEEEEeecCccc
Q 013267 400 GKKQALVLFETEEQATEALVCKHASSLGG--SIIRISFSQLQSI 441 (446)
Q Consensus 400 ~~g~~fV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~~~ 441 (446)
.+++|||+|.+.++|++|++.||+..+.| ++|+|.|++.+..
T Consensus 234 ~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 234 PRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 26899999999999999999999999875 7999999987543
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.9e-29 Score=232.90 Aligned_cols=237 Identities=25% Similarity=0.345 Sum_probs=205.2
Q ss_pred EEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe--cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCCce
Q 013267 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ--KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDEL 180 (446)
Q Consensus 103 v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~--~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~~~ 180 (446)
+||+ +++|+..|++.|+++|++..+.+.+ -+-|| |||.|.++++|.+|++.||...+.|+ +++++|+.
T Consensus 4 l~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy-~yvnf~~~~da~~A~~~~n~~~~~~~--~~rim~s~---- 73 (369)
T KOG0123|consen 4 LYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGY-AYVNFQQPADAERALDTMNFDVLKGK--PIRIMWSQ---- 73 (369)
T ss_pred eecC---CcCChHHHHHHhcccCCceeEEEeecCCccce-EEEecCCHHHHHHHHHHcCCcccCCc--EEEeehhc----
Confidence 7888 9999999999999999999887754 27788 99999999999999999999999998 88999985
Q ss_pred eeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEEEeC
Q 013267 181 QVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSN 260 (446)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 260 (446)
+|. +.|||.|
T Consensus 74 ---------rd~-------------------------------------------------------------~~~~i~n 83 (369)
T KOG0123|consen 74 ---------RDP-------------------------------------------------------------SLVFIKN 83 (369)
T ss_pred ---------cCC-------------------------------------------------------------ceeeecC
Confidence 220 0499999
Q ss_pred CCCCCCCHHHHHHHhcccCceEEEEEeeCC---CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCCCCCCc
Q 013267 261 LNSDRIDEDKLFNLFSLYGNIIRIKLLRNK---PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADT 337 (446)
Q Consensus 261 l~~~~~~~~~l~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~~~~~~ 337 (446)
|++ .++..+|+++|+.||.|.+|++..+. +|+ ||+|++.++|.+|+..+||..+.|+.|.|...........+..
T Consensus 84 l~~-~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~ 161 (369)
T KOG0123|consen 84 LDE-SIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLG 161 (369)
T ss_pred CCc-ccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhccccc
Confidence 996 69999999999999999999999987 778 9999999999999999999999999999998776543222211
Q ss_pred cccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHHHH
Q 013267 338 HEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQA 414 (446)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A 414 (446)
. + ...-..+++.|++.+.++.+|..+|+.||.|.++.++++. .++|+||.|.++++|
T Consensus 162 ~-~-------------------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a 221 (369)
T KOG0123|consen 162 E-Y-------------------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDA 221 (369)
T ss_pred c-h-------------------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHH
Confidence 1 1 1123578999999999999999999999999999998652 388999999999999
Q ss_pred HHHHHHhCCCccCCCeEEEEeecCccc
Q 013267 415 TEALVCKHASSLGGSIIRISFSQLQSI 441 (446)
Q Consensus 415 ~~A~~~l~~~~~~g~~l~v~~a~~~~~ 441 (446)
..|++.||+..+++..+.|.-++.+..
T Consensus 222 ~~av~~l~~~~~~~~~~~V~~aqkk~e 248 (369)
T KOG0123|consen 222 KKAVETLNGKIFGDKELYVGRAQKKSE 248 (369)
T ss_pred HHHHHhccCCcCCccceeecccccchh
Confidence 999999999999999999988877443
No 30
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=3.8e-28 Score=225.96 Aligned_cols=158 Identities=16% Similarity=0.275 Sum_probs=140.2
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
..++|||++||+++||++|+++|+.||+|++|+|++|+ +||||+|.+.++|.+|++.|++. .+.+++|+|.+
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~--~l~gr~i~V~~ 183 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGI--TVRNKRLKVSY 183 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCC--ccCCceeeeec
Confidence 56899999999999999999999999999999998763 89999999999999999999998 89999999999
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHH
Q 013267 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAV 152 (446)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~ 152 (446)
+.+.... .....|||.|||.++|+++|+++|++||.|..+.+.. +++|| |||+|.+.++|+
T Consensus 184 a~p~~~~-------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~ 249 (346)
T TIGR01659 184 ARPGGES-------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGV-AFVRFNKREEAQ 249 (346)
T ss_pred ccccccc-------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceE-EEEEECCHHHHH
Confidence 7653211 1123489999999999999999999999999888764 45688 999999999999
Q ss_pred HHHHHhCCCCCCCCCceEEEeeeCC
Q 013267 153 VARSSLQGRNIYDGCCQLDIQFSNL 177 (446)
Q Consensus 153 ~a~~~l~~~~~~~~~~~l~v~~~~~ 177 (446)
+|++.|++..+.++..+|+|.++..
T Consensus 250 ~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 250 EAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred HHHHHhCCCccCCCceeEEEEECCc
Confidence 9999999999988778899998864
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=2e-27 Score=232.10 Aligned_cols=170 Identities=21% Similarity=0.301 Sum_probs=143.4
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEe
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~ 326 (446)
..++|||+||+. .+++++|+++|+.||.|.+|+++.+. +|||||+|.+.++|.+|++.|||..+.|+.|+|.+.
T Consensus 106 ~~~rLfVGnLp~-~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISF-ELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCC-CCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456999999995 79999999999999999999998763 899999999999999999999999999999999864
Q ss_pred cCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----Cce
Q 013267 327 KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKK 402 (446)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g 402 (446)
....... . . ...........++|||+|||.++++++|+++|+.||.|.++++..++ .+|
T Consensus 185 ~~~p~a~-~----~------------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKG 247 (612)
T TIGR01645 185 SNMPQAQ-P----I------------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKG 247 (612)
T ss_pred ccccccc-c----c------------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCC
Confidence 4321000 0 0 00000111234799999999999999999999999999999998653 488
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 403 QALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 403 ~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
||||+|.+.++|.+|++.||++.++|+.|+|.++..+
T Consensus 248 fGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 248 YGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred eEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 9999999999999999999999999999999998864
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=1e-26 Score=221.29 Aligned_cols=262 Identities=20% Similarity=0.312 Sum_probs=207.6
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccccc
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL 83 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~ 83 (446)
..++|+|+|||..+..++|..+|..||+|..+.+.+....|+|.|....+|.+|++.+.+. .+...++++.|++.+..
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklays--r~k~~plyle~aP~dvf 461 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYS--RFKSAPLYLEWAPEDVF 461 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchh--hhccCccccccChhhhc
Confidence 4589999999999999999999999999999966655566999999999999999999988 78888999998876554
Q ss_pred ccc-----ccCCC-CC-------------------CC----C--------CCcEEEEEEcCCCCCcCHHHHHHhhcCCCc
Q 013267 84 TTM-----EQNAQ-GR-------------------GD----E--------PNRILLVTIHHMLYPITVEVLHQVFSPHGF 126 (446)
Q Consensus 84 ~~~-----~~~~~-~~-------------------~~----~--------~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~ 126 (446)
... ..... .. .+ . ......+||.|+.++.|.++|...|...|.
T Consensus 462 ~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~ 541 (725)
T KOG0110|consen 462 TEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGT 541 (725)
T ss_pred cCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCe
Confidence 411 00000 00 00 0 011122899999999999999999999999
Q ss_pred eeEEEEEe--------cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCC
Q 013267 127 VEKIVTFQ--------KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP 198 (446)
Q Consensus 127 i~~i~~~~--------~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (446)
|..+.+.. .+.|| |||+|.+.++|+.|++.|+|..+.|. .|.+.++..... + .
T Consensus 542 VlS~~I~kkkd~~~k~lSmGf-gFVEF~~~e~A~~a~k~lqgtvldGH--~l~lk~S~~k~~----------~------~ 602 (725)
T KOG0110|consen 542 VLSIEISKKKDPANKYLSMGF-GFVEFAKPESAQAALKALQGTVLDGH--KLELKISENKPA----------S------T 602 (725)
T ss_pred EEEEEEeccccccccccccce-eEEEecCHHHHHHHHHHhcCceecCc--eEEEEeccCccc----------c------c
Confidence 99987653 24498 99999999999999999999999988 666666541100 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhccc
Q 013267 199 AEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLY 278 (446)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~ 278 (446)
.+ + .......++.|+|.|+|. ..+..+++.+|..|
T Consensus 603 ~g-K-------------------------------------------~~~~kk~~tKIlVRNipF-eAt~rEVr~LF~aF 637 (725)
T KOG0110|consen 603 VG-K-------------------------------------------KKSKKKKGTKILVRNIPF-EATKREVRKLFTAF 637 (725)
T ss_pred cc-c-------------------------------------------ccccccccceeeeeccch-HHHHHHHHHHHhcc
Confidence 00 0 000012245899999994 69999999999999
Q ss_pred CceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCC
Q 013267 279 GNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 331 (446)
Q Consensus 279 G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~ 331 (446)
|.+.+|+|+... +|||||+|.+..+|..|+..|.+..+.||+|.+.|++....
T Consensus 638 GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 638 GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 999999997742 88999999999999999999999999999999999997653
No 33
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=7.5e-26 Score=203.04 Aligned_cols=234 Identities=16% Similarity=0.133 Sum_probs=175.6
Q ss_pred CceEEEEcCCCCCCCHHHHHHhcc-CccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQ-PFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~-~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
..|.+||.|||+++-++||.+++. ..|.|+-|.++-| ++||.|||.++|.+++|++.||.. .++|++|.|.-
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~--~~~GR~l~vKE 120 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKY--EVNGRELVVKE 120 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhc--cccCceEEEec
Confidence 457899999999999999999996 5699999999865 599999999999999999999988 89999999985
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEE----ecCCceEEEEEecChhhHHH
Q 013267 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF----QKSAGFQALIQYQLRPSAVV 153 (446)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~----~~~~g~~afv~f~~~~~A~~ 153 (446)
....+.-+ .....+ .--.+|+.++....-..-|...|+--|...+-.+. +.+++. .+++|.+.-.+..
T Consensus 121 d~d~q~~~--~~~~~r-----~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~-~t~t~~~~~~~~~ 192 (608)
T KOG4212|consen 121 DHDEQRDQ--YGRIVR-----DGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRN-NTNTMSNDYNNSS 192 (608)
T ss_pred cCchhhhh--hhheee-----ccCcccccCcceecccccccccCCCCccccCCCCccccccccccc-Cccccccccccch
Confidence 43321111 000000 00126888888888888888888777755543322 355554 7888888877777
Q ss_pred HHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhh
Q 013267 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAA 233 (446)
Q Consensus 154 a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (446)
++........+.+ ++++ ++
T Consensus 193 ~~~lfgl~~~Flr--~~h~-f~---------------------------------------------------------- 211 (608)
T KOG4212|consen 193 NYNLFGLSASFLR--SLHI-FS---------------------------------------------------------- 211 (608)
T ss_pred hhhcccchhhhhh--hccC-CC----------------------------------------------------------
Confidence 7765555444443 2221 11
Q ss_pred hhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHH
Q 013267 234 AIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVH 309 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~ 309 (446)
.|....+||.||. +.+..+.|++.|.--|.|..|.+-.++ +|++.++|.++-+|..||.
T Consensus 212 ----------------pPl~~k~fvanl~-~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIs 274 (608)
T KOG4212|consen 212 ----------------PPLHNKVFVANLD-YKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAIS 274 (608)
T ss_pred ----------------CCccceeeeeccc-cccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHH
Confidence 1223379999999 589999999999999999998877666 7899999999999999999
Q ss_pred HhcCCeeCCcEEEEEE
Q 013267 310 FLKGALLFGKRLEVNF 325 (446)
Q Consensus 310 ~lng~~~~g~~l~v~~ 325 (446)
.+++.-+..++..+.+
T Consensus 275 ml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 275 MLDRQGLFDRRMTVRL 290 (608)
T ss_pred hhccCCCccccceeec
Confidence 9998666666666665
No 34
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.94 E-value=3.5e-25 Score=197.38 Aligned_cols=283 Identities=23% Similarity=0.294 Sum_probs=217.9
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC-C-eEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccccc
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK-N-QALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELT 84 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~-~-~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~ 84 (446)
++.|.++-..+|-+-|++.|++||.|..|..+.+. + +|.|.|.+.+.|+.|...|.+.-+.-..+.|+|+|+....+.
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~Ln 231 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLN 231 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccce
Confidence 56789999999999999999999999988887653 3 499999999999999999999876677778999998765544
Q ss_pred ccccCCCCC---------C-----------------------------------------CCCCcEEEEEEcCCC-CCcC
Q 013267 85 TMEQNAQGR---------G-----------------------------------------DEPNRILLVTIHHML-YPIT 113 (446)
Q Consensus 85 ~~~~~~~~~---------~-----------------------------------------~~~~~~~~v~v~nl~-~~~t 113 (446)
.+-.++.+| + ..+.....|.|.||- ..+|
T Consensus 232 vKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT 311 (492)
T KOG1190|consen 232 VKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVT 311 (492)
T ss_pred eeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccc
Confidence 443331110 0 001112345666654 8899
Q ss_pred HHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCc
Q 013267 114 VEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFT 193 (446)
Q Consensus 114 ~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~ 193 (446)
.+-|..+|+-||+|.+|.++.+.+- .|+|+|.+...|+-|++.|+|..|+|+ +|++.++++..+......++..+++
T Consensus 312 ~d~LftlFgvYGdVqRVkil~nkkd-~ALIQmsd~~qAqLA~~hL~g~~l~gk--~lrvt~SKH~~vqlp~egq~d~glT 388 (492)
T KOG1190|consen 312 PDVLFTLFGVYGDVQRVKILYNKKD-NALIQMSDGQQAQLAMEHLEGHKLYGK--KLRVTLSKHTNVQLPREGQEDQGLT 388 (492)
T ss_pred hhHHHHHHhhhcceEEEEeeecCCc-ceeeeecchhHHHHHHHHhhcceecCc--eEEEeeccCccccCCCCCCcccccc
Confidence 9999999999999999999876555 499999999999999999999999996 9999999999988777666555555
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHH
Q 013267 194 NPNLP--AEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKL 271 (446)
Q Consensus 194 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 271 (446)
.+... ..+..++....+. ..-+++.+|+++|+|+ .+++++|
T Consensus 389 ~dy~~spLhrfkkpgsKN~~------------------------------------ni~PpsatlHlsnip~-svsee~l 431 (492)
T KOG1190|consen 389 KDYGNSPLHRFKKPGSKNYQ------------------------------------NIFPPSATLHLSNIPP-SVSEEDL 431 (492)
T ss_pred ccCCCCchhhccCccccccc------------------------------------ccCCchhheeeccCCc-ccchhHH
Confidence 43311 1111111000000 0135566999999997 7999999
Q ss_pred HHHhcccCce-EEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCc-EEEEEEecCC
Q 013267 272 FNLFSLYGNI-IRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK-RLEVNFSKHP 329 (446)
Q Consensus 272 ~~~F~~~G~v-~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~-~l~v~~~~~~ 329 (446)
+++|..-|.. ...+++...+.+|++.++++++|..|+..+++..+++. .++|+|++..
T Consensus 432 k~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 432 KNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred HHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 9999988866 44555554478999999999999999999999999665 9999998853
No 35
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=8.4e-26 Score=198.34 Aligned_cols=160 Identities=19% Similarity=0.250 Sum_probs=129.6
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEE------ccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVML------RAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~------~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
+|||+.|..++-|+.|+..|.+||+|++|.+- +.+|||||+|+-+|.|+-|++.+|+. .++||.|+|.. +
T Consensus 115 RvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr--P 190 (544)
T KOG0124|consen 115 RVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR--P 190 (544)
T ss_pred heeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC--C
Confidence 49999999999999999999999999998874 44799999999999999999999998 89999999983 2
Q ss_pred ccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEE-----ecCCceEEEEEecChhhHHHHH
Q 013267 81 QELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVAR 155 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afv~f~~~~~A~~a~ 155 (446)
..+....+--..-.......+||||..+-++.++++|+.+|..||+|..|.+- +.++|| +||+|.+...-..|+
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGy-GfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGY-GFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccce-eeEEeccccchHHHh
Confidence 11111111000001124567899999999999999999999999999999885 378899 999999999999999
Q ss_pred HHhCCCCCCCCCceEEEe
Q 013267 156 SSLQGRNIYDGCCQLDIQ 173 (446)
Q Consensus 156 ~~l~~~~~~~~~~~l~v~ 173 (446)
..||=..+.|. -|+|-
T Consensus 270 asMNlFDLGGQ--yLRVG 285 (544)
T KOG0124|consen 270 ASMNLFDLGGQ--YLRVG 285 (544)
T ss_pred hhcchhhcccc--eEecc
Confidence 99886666554 44443
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=8.4e-26 Score=209.54 Aligned_cols=315 Identities=17% Similarity=0.213 Sum_probs=202.1
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecc
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~ 79 (446)
|+||+-.|+...++.||+++|+.+|+|.+|+++.|+ |-|||+|.+.++...|+. |.|. .+.|.+|.|+.+.
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGq--rllg~pv~vq~sE 256 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQ--RLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCC--cccCceeEecccH
Confidence 678888888899999999999999999999999884 889999999999999985 6666 6999999999775
Q ss_pred cccccccccCCCCCCCCC-CcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEE-----ecCCceEEEEEecChhhHHH
Q 013267 80 HQELTTMEQNAQGRGDEP-NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVV 153 (446)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afv~f~~~~~A~~ 153 (446)
.+.-......+.....+. .+..++||+||-+++++++|+.+|++||.|+.|.+. .+++|| +||+|.+.++|..
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgf-Gfi~f~~~~~ar~ 335 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGF-GFITFVNKEDARK 335 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCc-ceEEEecHHHHHH
Confidence 544332222222222222 233338999999999999999999999999998875 378999 9999999999999
Q ss_pred HHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCc-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCcccc
Q 013267 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFT-NPNLPAEQKGRPSQSGYSEAGGMYAPGARA---VAFPQM 229 (446)
Q Consensus 154 a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 229 (446)
|++.|||..+.|+..+|.+.......... .......|.. .-.++.+.... .+.+....+..+..... .++-.+
T Consensus 336 a~e~lngfelAGr~ikV~~v~~r~~~~~a-~~~~~d~D~~d~~gl~~~~~g~--~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 336 ALEQLNGFELAGRLIKVSVVTERVDTKEA-AVTQFDFDEDDRQGLSLGSGGR--NQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHhccceecCceEEEEEeeeecccccc-cccccccchhhccccccccccH--HHHHHHHhccCCccccchhhhHHHhc
Confidence 99999999898885544332222111100 0000000000 00010000000 00000000000000000 000000
Q ss_pred hhhhhhhhccC-----CCC----CCCCccCCCcceEEEeCCC-CCCCC--------HHHHHHHhcccCceEEEEEeeCCC
Q 013267 230 ANAAAIAAAFG-----GGL----PPGITGTNDRCTVLVSNLN-SDRID--------EDKLFNLFSLYGNIIRIKLLRNKP 291 (446)
Q Consensus 230 ~~~~~~~~~~~-----~~~----~~~~~~~~~~~~l~v~nl~-~~~~~--------~~~l~~~F~~~G~v~~v~i~~~~~ 291 (446)
......+...+ ... .|+. ..++.++.+.|+= |.+.| .+++.+-+.+||.|.+|.|..+.-
T Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~~p~~--~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~ 490 (549)
T KOG0147|consen 413 AKLASAAQFNGVVRVRSVDPADASPAF--DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA 490 (549)
T ss_pred cccchHHhhcCCcCccccCcccccccc--CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC
Confidence 00000000000 000 1111 1344455666542 32122 347888899999999999987767
Q ss_pred CeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 292 DHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 292 g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
|+.||.|.+.+.|..|+..|||.+|.|+.|.+.|-...
T Consensus 491 g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 491 GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 99999999999999999999999999999999997643
No 37
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=4.5e-24 Score=187.53 Aligned_cols=273 Identities=17% Similarity=0.248 Sum_probs=198.2
Q ss_pred EEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEE-----ecCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeee
Q 013267 101 LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (446)
Q Consensus 101 ~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~ 175 (446)
-||||+.+.+.+.++.|+..|.+||+|.+|.+. .+++|| |||+|+=++.|..|++.|||..+.|+.+ +|...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgF-AFVEYEvPEaAqLAlEqMNg~mlGGRNi--KVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGF-AFVEYEVPEAAQLALEQMNGQMLGGRNI--KVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccce-EEEEEeCcHHHHHHHHHhccccccCccc--cccCC
Confidence 369999999999999999999999999999864 488999 9999999999999999999999988833 33211
Q ss_pred CCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcce
Q 013267 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCT 255 (446)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (446)
+ .++.+.|......-.+. .-+.
T Consensus 191 --s------------------------------------------NmpQAQpiID~vqeeAk--------------~fnR 212 (544)
T KOG0124|consen 191 --S------------------------------------------NMPQAQPIIDMVQEEAK--------------KFNR 212 (544)
T ss_pred --C------------------------------------------CCcccchHHHHHHHHHH--------------hhhe
Confidence 0 00011111000000000 1127
Q ss_pred EEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCC
Q 013267 256 VLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 330 (446)
Q Consensus 256 l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~ 330 (446)
|||..+.| .++++||+..|+.||+|.+|.+-++. +||+|++|.+......|+..||=+.++|.-|+|..+-...
T Consensus 213 iYVaSvHp-DLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 213 IYVASVHP-DLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred EEeeecCC-CccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 99999998 59999999999999999999998854 8899999999999999999999999999999998655443
Q ss_pred CCC------------------------------------CCCccccccCCcccccccc---------cc-----------
Q 013267 331 ITQ------------------------------------GADTHEYMNSNLNRFNRNA---------AK----------- 354 (446)
Q Consensus 331 ~~~------------------------------------~~~~~~~~~~~~~~~~~~~---------~~----------- 354 (446)
... +.....-.-++..+...+. ..
T Consensus 292 ~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~ 371 (544)
T KOG0124|consen 292 DALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPA 371 (544)
T ss_pred chhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCC
Confidence 210 0000000000100000000 00
Q ss_pred --------------cc----------------------------------------------------cccCCCccEEEE
Q 013267 355 --------------NY----------------------------------------------------RYCCSPTKMIHL 368 (446)
Q Consensus 355 --------------~~----------------------------------------------------~~~~~~~~~l~v 368 (446)
+. .-....+++|.+
T Consensus 372 ~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivL 451 (544)
T KOG0124|consen 372 RPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVL 451 (544)
T ss_pred CCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEE
Confidence 00 001124678899
Q ss_pred eCC--CCCCC---HHHHHHHhhccCCeeEEEEEeeCCce--------EEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 369 STL--PQDVT---EEEIVSHLEEHGSIVNTKLFEMNGKK--------QALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 369 ~nl--p~~~t---~~~l~~~F~~~G~v~~~~i~~~~~~g--------~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
+|+ |.+++ +.+|++.|++||.|.+|.|+..+..+ --||+|....++.+|...|+|.+|+|+++..+.
T Consensus 452 RNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 452 RNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred eccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhh
Confidence 998 44555 68999999999999999998554321 579999999999999999999999999987654
No 38
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=1.4e-24 Score=185.31 Aligned_cols=147 Identities=24% Similarity=0.440 Sum_probs=138.4
Q ss_pred eEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCCCC
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG 334 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~~~ 334 (446)
.|||+||| +..++.+|+.+|++||.|..|.|++ ++|||..++...|..|++.|||..|+|..|.|+-+++++
T Consensus 4 KLFIGNLp-~~~~~~elr~lFe~ygkVlECDIvK---NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 4 KLFIGNLP-REATEQELRSLFEQYGKVLECDIVK---NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred chhccCCC-cccchHHHHHHHHhhCceEeeeeec---ccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 79999999 5799999999999999999999984 599999999999999999999999999999999888652
Q ss_pred CCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHH
Q 013267 335 ADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 414 (446)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A 414 (446)
.++..|+|+||-+..+-.||+..|.+||.|.+|+|. ++|+||.|...++|
T Consensus 76 --------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda 125 (346)
T KOG0109|consen 76 --------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDA 125 (346)
T ss_pred --------------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeee----cceeEEEEeeccch
Confidence 356799999999999999999999999999999997 77999999999999
Q ss_pred HHHHHHhCCCccCCCeEEEEeecCc
Q 013267 415 TEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 415 ~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
..|++.|+|..++|++++|+.|+++
T Consensus 126 ~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 126 VEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred HHHHhcccccccccceeeeeeeccc
Confidence 9999999999999999999999876
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=3.4e-24 Score=170.89 Aligned_cols=162 Identities=17% Similarity=0.324 Sum_probs=141.3
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecC
Q 013267 254 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 328 (446)
Q Consensus 254 ~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~ 328 (446)
.+|||+||++ .++++.|+++|-+.|+|..+++..+. +||||++|.++++|..|++.||...+.|++|+|..+..
T Consensus 10 ~tiyvgnld~-kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 10 ATLYVGNLDE-KVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred ceEEEecCCH-HHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 4999999995 79999999999999999999988865 89999999999999999999999999999999998762
Q ss_pred CCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEE-EEEee----CCceE
Q 013267 329 PNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT-KLFEM----NGKKQ 403 (446)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~-~i~~~----~~~g~ 403 (446)
... ...-+.+|||+||.+.++|..|.+.|+.||.+.+. +++++ +.+++
T Consensus 89 ~~~---------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~ 141 (203)
T KOG0131|consen 89 HQK---------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGF 141 (203)
T ss_pred ccc---------------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCC
Confidence 210 11123689999999999999999999999988663 55533 34779
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCccccc
Q 013267 404 ALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIRE 443 (446)
Q Consensus 404 ~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 443 (446)
|||.|.+.+.+.+|+..|||+.+.++++.|+++..+..|.
T Consensus 142 g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 142 GFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred eEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 9999999999999999999999999999999998876553
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.91 E-value=1.9e-23 Score=193.99 Aligned_cols=276 Identities=21% Similarity=0.256 Sum_probs=197.1
Q ss_pred EEEcCCCCCcCHHHHHHhhcCCCceeEEEEE-----ecCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCC
Q 013267 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177 (446)
Q Consensus 103 v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~ 177 (446)
||+.-++...+..+|+++|+.+|+|.+|.++ .+++|. |||+|.+.+....|+ .|.|+.+.|- +|.+..+..
T Consensus 182 vf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi-~Yvef~D~~sVp~ai-aLsGqrllg~--pv~vq~sEa 257 (549)
T KOG0147|consen 182 VFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGI-AYVEFCDEQSVPLAI-ALSGQRLLGV--PVIVQLSEA 257 (549)
T ss_pred HHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcce-eEEEEecccchhhHh-hhcCCcccCc--eeEecccHH
Confidence 6777777888899999999999999999887 378897 999999999999999 6899888776 555544321
Q ss_pred CceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEE
Q 013267 178 DELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVL 257 (446)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (446)
.. .+. +. .+++..+..- ..|-..||
T Consensus 258 ek---------nr~------------a~-----------------------------~s~a~~~k~~-----~~p~~rl~ 282 (549)
T KOG0147|consen 258 EK---------NRA------------AN-----------------------------ASPALQGKGF-----TGPMRRLY 282 (549)
T ss_pred HH---------HHH------------Hh-----------------------------cccccccccc-----ccchhhhh
Confidence 10 000 00 0000000000 01111399
Q ss_pred EeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCC
Q 013267 258 VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT 332 (446)
Q Consensus 258 v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~ 332 (446)
|+||.. ++++++|+.+|++||.|..|.+..+. +||+|++|.+.++|..|++.|||+.+.|+.|+|.........
T Consensus 283 vgnLHf-Nite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 283 VGNLHF-NITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred hccccc-CchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeeccc
Confidence 999995 89999999999999999999988874 889999999999999999999999999999999875544332
Q ss_pred CCC--Ccccc-------ccC-Cccccc-----ccc-----------------------ccc------cccc-------CC
Q 013267 333 QGA--DTHEY-------MNS-NLNRFN-----RNA-----------------------AKN------YRYC-------CS 361 (446)
Q Consensus 333 ~~~--~~~~~-------~~~-~~~~~~-----~~~-----------------------~~~------~~~~-------~~ 361 (446)
... ...++ ... ...+.+ .++ .-+ ...+ ..
T Consensus 362 ~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i 441 (549)
T KOG0147|consen 362 KEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDI 441 (549)
T ss_pred ccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCC
Confidence 110 00000 000 000000 000 000 0111 25
Q ss_pred CccEEEEeCCCC--CCC--------HHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeE
Q 013267 362 PTKMIHLSTLPQ--DVT--------EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSII 431 (446)
Q Consensus 362 ~~~~l~v~nlp~--~~t--------~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l 431 (446)
|+.|+.|+|+=. ..| .+|+.+.|..||+|..|.+-++ +-|+.||.|.+.+.|..|++.|||.+|.|+.|
T Consensus 442 ~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~I 520 (549)
T KOG0147|consen 442 PTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMI 520 (549)
T ss_pred ccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-CCceEEEecCcHHHHHHHHHHHhhhhhcccee
Confidence 788999999843 222 4899999999999988877543 35999999999999999999999999999999
Q ss_pred EEEeecCc
Q 013267 432 RISFSQLQ 439 (446)
Q Consensus 432 ~v~~a~~~ 439 (446)
...|-...
T Consensus 521 ta~~~~~~ 528 (549)
T KOG0147|consen 521 TAKYLPLE 528 (549)
T ss_pred EEEEeehh
Confidence 99986543
No 41
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.90 E-value=1.4e-21 Score=172.37 Aligned_cols=278 Identities=18% Similarity=0.229 Sum_probs=210.5
Q ss_pred EEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCCc
Q 013267 100 ILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDE 179 (446)
Q Consensus 100 ~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~~ 179 (446)
...|.|.+|-..+++.+|.+..+.||+|.-+..+..++ +|.|+|++.+-|..++.....-.++-....--+.|+..+.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r--~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~ 108 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR--QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQC 108 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccccc--eeeeeeccccchhhheehhccCcccccCchhhcccchhhh
Confidence 34588999999999999999999999999999888766 4999999999999988654332222211111222221111
Q ss_pred eeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEEEe
Q 013267 180 LQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVS 259 (446)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 259 (446)
..+ ++..+..++.+|.++
T Consensus 109 ------------i~R--------------------------------------------------~g~es~~pN~VLl~T 126 (494)
T KOG1456|consen 109 ------------IER--------------------------------------------------PGDESATPNKVLLFT 126 (494)
T ss_pred ------------hcc--------------------------------------------------CCCCCCCCCeEEEEE
Confidence 111 122223455688888
Q ss_pred CCCC-CCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeC-C-cEEEEEEecCCCCCC---
Q 013267 260 NLNS-DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLF-G-KRLEVNFSKHPNITQ--- 333 (446)
Q Consensus 260 nl~~-~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~-g-~~l~v~~~~~~~~~~--- 333 (446)
-|.| +.+|.|.|+.++...|.|.+|.|+...--.|.|+|++.+.|++|.+.|||..|. | ++|+|+|+++...+.
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~kn 206 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKN 206 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeec
Confidence 7776 679999999999999999999988764449999999999999999999999884 4 699999999998743
Q ss_pred CCCccccccCCcccc-----------cccccccc----------------------------------------cccCCC
Q 013267 334 GADTHEYMNSNLNRF-----------NRNAAKNY----------------------------------------RYCCSP 362 (446)
Q Consensus 334 ~~~~~~~~~~~~~~~-----------~~~~~~~~----------------------------------------~~~~~~ 362 (446)
....+||+...+.+. ..+....+ .....+
T Consensus 207 d~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~ 286 (494)
T KOG1456|consen 207 DKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAP 286 (494)
T ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCC
Confidence 344566665433211 11110000 012346
Q ss_pred ccEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCccc
Q 013267 363 TKMIHLSTLPQ-DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 441 (446)
Q Consensus 363 ~~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 441 (446)
++++.|.+|.. .++.+.|..+|..||.|+++++++. -.|.|.|++.+..+.++|+..||+..+.|.+|.|++||...+
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccccc
Confidence 78999999986 5789999999999999999999964 377999999999999999999999999999999999998765
Q ss_pred c
Q 013267 442 R 442 (446)
Q Consensus 442 ~ 442 (446)
-
T Consensus 366 ~ 366 (494)
T KOG1456|consen 366 S 366 (494)
T ss_pred c
Confidence 3
No 42
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.9e-22 Score=170.17 Aligned_cols=81 Identities=19% Similarity=0.405 Sum_probs=75.2
Q ss_pred cCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEE
Q 013267 249 GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 323 (446)
Q Consensus 249 ~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v 323 (446)
..++.|.|||..||. ...+.||.++|-.||.|.+.+++-|. |+|+||.|+|+.+|+.||..|||+.|+-++|+|
T Consensus 281 eGPeGCNlFIYHLPQ-EFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQ-EFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred cCCCcceEEEEeCch-hhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 467889999999996 59999999999999999999988765 889999999999999999999999999999999
Q ss_pred EEecCCC
Q 013267 324 NFSKHPN 330 (446)
Q Consensus 324 ~~~~~~~ 330 (446)
.+.+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9998874
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=6.8e-22 Score=166.85 Aligned_cols=188 Identities=21% Similarity=0.317 Sum_probs=146.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCC-eeCC--cEEEEE
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGA-LLFG--KRLEVN 324 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~-~~~g--~~l~v~ 324 (446)
..+.|||+.|. ..-.|||++.+|..||+|+.|.+++.. ||||||+|.+.-+|+.||..|||. .+.| ..|.|.
T Consensus 18 ~drklfvgml~-kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLN-KQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhc-ccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 34589999999 589999999999999999999998854 899999999999999999999994 4455 588888
Q ss_pred EecCCCCCC--------------CCCc-------------------------cccccC----------------------
Q 013267 325 FSKHPNITQ--------------GADT-------------------------HEYMNS---------------------- 343 (446)
Q Consensus 325 ~~~~~~~~~--------------~~~~-------------------------~~~~~~---------------------- 343 (446)
|+....++. .+.. ..|...
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 877654410 0000 000000
Q ss_pred -Ccc----ccc------------------------------------------------cccc-----------------
Q 013267 344 -NLN----RFN------------------------------------------------RNAA----------------- 353 (446)
Q Consensus 344 -~~~----~~~------------------------------------------------~~~~----------------- 353 (446)
+.. ... ++..
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 000 000 0000
Q ss_pred --cc-----------------ccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee----CCceEEEEEeCC
Q 013267 354 --KN-----------------YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM----NGKKQALVLFET 410 (446)
Q Consensus 354 --~~-----------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~----~~~g~~fV~f~~ 410 (446)
.+ ....++.+|+|||-+||.+..+.||.+.|-+||.|.+.+++.+ .+|+||||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00 0356678999999999999999999999999999999999854 348999999999
Q ss_pred HHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 411 EEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 411 ~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
+.+|++||..|||++|+-++|+|.+.+|+.
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 999999999999999999999999988874
No 44
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.86 E-value=2.2e-21 Score=154.93 Aligned_cols=155 Identities=18% Similarity=0.269 Sum_probs=131.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
.-+|||+||+..+|++-|+++|-+.|+|+++.+.+|+ ||||++|.+.|||.=|++.||.. ++-|++|+|..+
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~V--kLYgrpIrv~ka 86 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMV--KLYGRPIRVNKA 86 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHH--HhcCceeEEEec
Confidence 4589999999999999999999999999999998874 99999999999999999999966 899999999987
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeE---EEEE---ecCCceEEEEEecChhhHH
Q 013267 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEK---IVTF---QKSAGFQALIQYQLRPSAV 152 (446)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~---i~~~---~~~~g~~afv~f~~~~~A~ 152 (446)
.....+.. -...+||+||.+.+++..|++.|+.||.+.+ |... .+++|| +||-|++.+.+.
T Consensus 87 s~~~~nl~------------vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~-g~i~~~sfeasd 153 (203)
T KOG0131|consen 87 SAHQKNLD------------VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGF-GFINYASFEASD 153 (203)
T ss_pred cccccccc------------ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCC-eEEechhHHHHH
Confidence 62211111 1134899999999999999999999999885 2221 366778 999999999999
Q ss_pred HHHHHhCCCCCCCCCceEEEeeeC
Q 013267 153 VARSSLQGRNIYDGCCQLDIQFSN 176 (446)
Q Consensus 153 ~a~~~l~~~~~~~~~~~l~v~~~~ 176 (446)
+|+..++|+.+.++ ++++.++.
T Consensus 154 ~ai~s~ngq~l~nr--~itv~ya~ 175 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNR--PITVSYAF 175 (203)
T ss_pred HHHHHhccchhcCC--ceEEEEEE
Confidence 99999999999888 56666654
No 45
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.86 E-value=2.7e-20 Score=155.10 Aligned_cols=187 Identities=21% Similarity=0.369 Sum_probs=149.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHH----HhcccCceEEEEEeeCC--CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEE
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFN----LFSLYGNIIRIKLLRNK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 323 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~----~F~~~G~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v 323 (446)
.+++.||||.||+ +.+..++|+. +|++||.|..|..+... +|.|||.|.+.+.|..|+..|+|+.|.|+.+++
T Consensus 6 ~~pn~TlYInnLn-ekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 6 VNPNGTLYINNLN-EKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred cCCCceEeehhcc-ccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 3445599999999 6899998877 99999999999877654 999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCcccccc-------CCcccccccccccc---------------cccCCCccEEEEeCCCCCCCHHHHH
Q 013267 324 NFSKHPNITQGADTHEYMN-------SNLNRFNRNAAKNY---------------RYCCSPTKMIHLSTLPQDVTEEEIV 381 (446)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------------~~~~~~~~~l~v~nlp~~~t~~~l~ 381 (446)
.|++.++.........+.. ....+...+...|. ....+|...+++.|||.+++.+.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 9999887632110001000 00000001111110 1235678999999999999999999
Q ss_pred HHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccC-CCeEEEEeecC
Q 013267 382 SHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQL 438 (446)
Q Consensus 382 ~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~ 438 (446)
.+|.+|....++++++. .++.|||+|.+...|..|...+.|..+. ...+.++|++.
T Consensus 165 ~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~K 221 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAKK 221 (221)
T ss_pred HHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEecccCC
Confidence 99999999999999863 4789999999999999999999999998 99999999863
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.85 E-value=2.5e-18 Score=158.09 Aligned_cols=400 Identities=17% Similarity=0.198 Sum_probs=227.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecc
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~ 79 (446)
....|.+++||+++|++||++||+-++ |.++++.+. .|.|||+|.+.||+++|++.-.- .+..+-|.|.-+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~---~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRE---SMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHH---HhCCceEEEEccC
Confidence 346789999999999999999999996 888777765 38899999999999999985432 5888899999887
Q ss_pred cccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeE-EEEE----ecCCceEEEEEecChhhHHHH
Q 013267 80 HQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEK-IVTF----QKSAGFQALIQYQLRPSAVVA 154 (446)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~-i~~~----~~~~g~~afv~f~~~~~A~~a 154 (446)
..+..+..............+ |.+.+||+.+|+++|.++|+..-.+.+ |.+. .+..|= |||+|++.+.|+.|
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~v--VRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGE-AfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGV--VRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGE-AFVQFESQESAEIA 161 (510)
T ss_pred CccccccccCCCCCCCCCCce--EEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccc-eEEEecCHHHHHHH
Confidence 766655544434333333344 778999999999999999998644444 2222 256674 99999999999999
Q ss_pred HHHhCCCCCCCCCceEEEeeeCCCceeeeeCC-----CcccCCcCCCCCCCCCCC-C----CCCCCC------CCCCCCC
Q 013267 155 RSSLQGRNIYDGCCQLDIQFSNLDELQVNYNN-----ERSRDFTNPNLPAEQKGR-P----SQSGYS------EAGGMYA 218 (446)
Q Consensus 155 ~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~----~~~~~~------~~~~~~~ 218 (446)
+...+ ..|..+ =+.|--+........... .+.-.|..+ ...+.. . -.+... ......+
T Consensus 162 l~rhr-e~iGhR--YIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~---~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g 235 (510)
T KOG4211|consen 162 LGRHR-ENIGHR--YIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRP---GAPRGGYDYGQGRDPGRNATRYGAGGEGYYG 235 (510)
T ss_pred HHHHH-Hhhccc--eEEeehhHHHHHHhhccccccccCCCCccccc---cCCccccccccccCCCccccccccccCCccc
Confidence 98732 233222 223332222211100000 000001000 000000 0 000000 0000000
Q ss_pred CCCCCCCcc--cc------hhhhhhhhccCCCCC---CCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEe
Q 013267 219 PGARAVAFP--QM------ANAAAIAAAFGGGLP---PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLL 287 (446)
Q Consensus 219 ~~~~~~~~~--~~------~~~~~~~~~~~~~~~---~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~ 287 (446)
....+...+ .. ..........+...+ ......+....++..+|| +..++.++.++|+..-++ .|.|-
T Consensus 236 ~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlp-y~a~~~di~nfFspl~p~-~v~i~ 313 (510)
T KOG4211|consen 236 FSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLP-YDATENDIANFFSPLNPY-RVHIE 313 (510)
T ss_pred cccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCC-ccCCCcchhhhcCCCCce-eEEEE
Confidence 000000000 00 000000000000000 000112222689999999 689999999999988766 45544
Q ss_pred eCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCC-------CCCCc-------------cccc--
Q 013267 288 RNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT-------QGADT-------------HEYM-- 341 (446)
Q Consensus 288 ~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~-------~~~~~-------------~~~~-- 341 (446)
... .|.|+|+|.+.++|..||. -++..++.+-+.+...-..-.. +.+.. ..+.
T Consensus 314 ig~dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG 392 (510)
T KOG4211|consen 314 IGPDGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGG 392 (510)
T ss_pred eCCCCccCCcceeecccchhhHhhhc-cCCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccccccccC
Confidence 433 7799999999999999998 5666666665554432111100 00000 0000
Q ss_pred -------cC----Ccccccccccccc-------cccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC---
Q 013267 342 -------NS----NLNRFNRNAAKNY-------RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG--- 400 (446)
Q Consensus 342 -------~~----~~~~~~~~~~~~~-------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~--- 400 (446)
.. +.....++..-.+ ......-.+|..+.+|...++.|+.++|.+++.- .+.+..++.
T Consensus 393 ~~g~~~~~~~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~~~a-~~~~~yd~~~~~ 471 (510)
T KOG4211|consen 393 GNGGGGRGSPYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPIRPA-QVELLYDHQFQR 471 (510)
T ss_pred CCCCccccCCCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhcccccCcc-cccccccccccc
Confidence 00 0000000000000 0000112467789999999999999999988743 455543322
Q ss_pred ceEEEEEeCCHHHHHHHHHH
Q 013267 401 KKQALVLFETEEQATEALVC 420 (446)
Q Consensus 401 ~g~~fV~f~~~~~A~~A~~~ 420 (446)
.+.|-|.|.+.++++.|+..
T Consensus 472 ~~~a~~~~~~~~~~q~a~~~ 491 (510)
T KOG4211|consen 472 SGDARVIFYNRKDYQDALMK 491 (510)
T ss_pred cCceeEEEechhhhHHHHHh
Confidence 55899999999999999854
No 47
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=9.9e-21 Score=161.97 Aligned_cols=145 Identities=19% Similarity=0.309 Sum_probs=129.9
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccccccc
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTM 86 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~~~ 86 (446)
.|||+|||.++++.+|+.+|.+||+|.+|.|+++ ||||-.++...|..|+..||+. .|+|..|.|+-++.+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--YgFVHiEdktaaedairNLhgY--tLhg~nInVeaSksK----- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--YGFVHIEDKTAAEDAIRNLHGY--TLHGVNINVEASKSK----- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--cceEEeecccccHHHHhhcccc--eecceEEEEEecccc-----
Confidence 5899999999999999999999999999999986 9999999999999999999988 999999999976654
Q ss_pred ccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhhHHHHHHHhCCCCCCCC
Q 013267 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDG 166 (446)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~ 166 (446)
++....++|+|+.+..+..+|+..|.+||++..+.+.+ +| +||.|.-.++|..|+..|++..+.|+
T Consensus 75 ----------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk---dy-~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 75 ----------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK---DY-AFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred ----------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec---ce-eEEEEeeccchHHHHhcccccccccc
Confidence 12223489999999999999999999999999887754 56 99999999999999999999999998
Q ss_pred CceEEEeeeC
Q 013267 167 CCQLDIQFSN 176 (446)
Q Consensus 167 ~~~l~v~~~~ 176 (446)
+++|+.+.
T Consensus 141 --~m~vq~st 148 (346)
T KOG0109|consen 141 --RMHVQLST 148 (346)
T ss_pred --eeeeeeec
Confidence 66666654
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=4.1e-18 Score=142.18 Aligned_cols=202 Identities=21% Similarity=0.257 Sum_probs=145.9
Q ss_pred EEEEcCCCCCcCHHHHHH----hhcCCCceeEEEEEe--cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeee
Q 013267 102 LVTIHHMLYPITVEVLHQ----VFSPHGFVEKIVTFQ--KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (446)
Q Consensus 102 ~v~v~nl~~~~t~~~l~~----~f~~~G~i~~i~~~~--~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~ 175 (446)
.+||.||...+..++|+. +|++||.|.+|..++ +.+| +|||.|.+.+.|..|+..|+|..++|+ ++++.|+
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRG-QA~VvFk~~~~As~A~r~l~gfpFygK--~mriqyA 87 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRG-QAFVVFKETEAASAALRALQGFPFYGK--PMRIQYA 87 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccC-ceEEEecChhHHHHHHHHhcCCcccCc--hhheecc
Confidence 589999999999999886 999999999999985 7788 599999999999999999999999999 8999999
Q ss_pred CCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCC-CccCCCcc
Q 013267 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPG-ITGTNDRC 254 (446)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 254 (446)
..++........ ..-+..+..+......-.++......... ++. ....++. ....+++.
T Consensus 88 ~s~sdii~~~~~-~~v~~~~k~~~~~~~~~~~~~~~ng~~~~--------~~~-----------~~~p~p~~~~~~ppn~ 147 (221)
T KOG4206|consen 88 KSDSDIIAQAPG-TFVEKEKKINGEILARIKQPLDTNGHFYN--------MNR-----------MNLPPPFLAQMAPPNN 147 (221)
T ss_pred cCccchhhccCc-eeccccCccccccccccCCcccccccccc--------ccc-----------ccCCCCccccCCCCce
Confidence 977655432110 00000000000000000000000000000 000 0001111 12245677
Q ss_pred eEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeC-CcEEEEEEec
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLF-GKRLEVNFSK 327 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~-g~~l~v~~~~ 327 (446)
+|++.|||. .++.+.+..+|.+|.....++++...++.|||+|.+...|..|.+.+.|..+- ...+.+.+++
T Consensus 148 ilf~~niP~-es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 148 ILFLTNIPS-ESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred EEEEecCCc-chhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999996 58999999999999999999999888999999999999999999999999995 7888888765
No 49
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=2.4e-18 Score=162.60 Aligned_cols=276 Identities=16% Similarity=0.235 Sum_probs=194.0
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCc-----------cc-eeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceec
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPF-----------GV-ITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIR 69 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~-----------G~-i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~ 69 (446)
+...+.++|+++|..++|+....+|..- |+ +..+.+...+++||++|.+.++|..|+... +. .+.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~-~~--~f~ 248 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALD-GI--IFE 248 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhccc-ch--hhC
Confidence 3456789999999999999999999532 44 788999999999999999999999998743 33 588
Q ss_pred CeEeEEEec-ccccccccccC---------CCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEE-----e
Q 013267 70 GRNVYVQFS-SHQELTTMEQN---------AQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----Q 134 (446)
Q Consensus 70 g~~i~v~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~-----~ 134 (446)
|.++++.-- ........... ........-....++|++||...++.++.++...||++....++ .
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 888776621 11111111110 01111223344568999999999999999999999999866554 2
Q ss_pred cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCC
Q 013267 135 KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAG 214 (446)
Q Consensus 135 ~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (446)
.++|| ||.+|.+......|++.|||..+.+. +|.++.+-........+... .+...+.++...
T Consensus 329 ~skg~-af~ey~dpsvtd~A~agLnGm~lgd~--~lvvq~A~~g~~~~~~~~~~-~~~~~~~i~~~~------------- 391 (500)
T KOG0120|consen 329 NSKGF-AFCEYCDPSVTDQAIAGLNGMQLGDK--KLVVQRAIVGASNANVNFNI-SQSQVPGIPLLM------------- 391 (500)
T ss_pred cccce-eeeeeeCCcchhhhhcccchhhhcCc--eeEeehhhccchhccccCCc-cccccccchhhh-------------
Confidence 67898 99999999999999999999999877 77777776554332211110 000000000000
Q ss_pred CCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEEEeCCCC-C-CCCHH-------HHHHHhcccCceEEEE
Q 013267 215 GMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNS-D-RIDED-------KLFNLFSLYGNIIRIK 285 (446)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~-~-~~~~~-------~l~~~F~~~G~v~~v~ 285 (446)
......++.+|.+.|+-. + -.+++ +++.-+..||.|..|.
T Consensus 392 -------------------------------~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ 440 (500)
T KOG0120|consen 392 -------------------------------TQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVE 440 (500)
T ss_pred -------------------------------cccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEe
Confidence 000123444777777652 1 11222 5666789999999999
Q ss_pred EeeC-C-------CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecC
Q 013267 286 LLRN-K-------PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 328 (446)
Q Consensus 286 i~~~-~-------~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~ 328 (446)
+..+ . -|..||+|.+.++|++|++.|+|..|.||.+..+|-..
T Consensus 441 ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 441 IPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred cCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 8876 2 56889999999999999999999999999999998553
No 50
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.1e-17 Score=158.14 Aligned_cols=282 Identities=14% Similarity=0.188 Sum_probs=193.2
Q ss_pred CcEEEEEEcCCCCCcCHHHHHHhhcCC-----------CceeEEEEEecCCceEEEEEecChhhHHHHHHHhCCCCCCCC
Q 013267 98 NRILLVTIHHMLYPITVEVLHQVFSPH-----------GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDG 166 (446)
Q Consensus 98 ~~~~~v~v~nl~~~~t~~~l~~~f~~~-----------G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~ 166 (446)
.+..+++|+++|..++++....+|..- |+-..-..+...++| ||++|.+.++|..|+ .+++..+.|.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nf-a~ie~~s~~~at~~~-~~~~~~f~g~ 250 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNF-AFIEFRSISEATEAM-ALDGIIFEGR 250 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccc-eeEEecCCCchhhhh-cccchhhCCC
Confidence 344579999999999999999888753 332222233556777 999999999999998 4577666665
Q ss_pred CceEEEeeeCCCceeeeeCCCcccCCcCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCC
Q 013267 167 CCQLDIQFSNLDELQVNYNNERSRDFTNP-NLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPP 245 (446)
Q Consensus 167 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (446)
...+..... |... .......+ ++ . ..........
T Consensus 251 ~~~~~r~~d----------------~~~~p~~~~~~~~----~~--~---------------------~~~~~~~t~~-- 285 (500)
T KOG0120|consen 251 PLKIRRPHD----------------YQPVPGITLSPSQ----LG--K---------------------VGLLPASTDV-- 285 (500)
T ss_pred Cceeccccc----------------ccCCccchhhhcc----cc--c---------------------cCCcccccCc--
Confidence 332222111 1100 00000000 00 0 0000000011
Q ss_pred CCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcE
Q 013267 246 GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKR 320 (446)
Q Consensus 246 ~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~ 320 (446)
.-....++|++||. ..+++++.++...||.+....++.+. +||||.+|.+......|+..|||..++++.
T Consensus 286 ----~~~~~ki~v~~lp~-~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 286 ----PDSPNKIFVGGLPL-YLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred ----ccccchhhhccCcC-ccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 12234799999994 89999999999999999998887754 889999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCccccccCCcccccccccccc--cccCCCccEEEEeCCCC--C------CC--HHHHHHHhhccC
Q 013267 321 LEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNY--RYCCSPTKMIHLSTLPQ--D------VT--EEEIVSHLEEHG 388 (446)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~v~nlp~--~------~t--~~~l~~~F~~~G 388 (446)
|.|..+-............ ....-++..+. +..+.|..+|.+.|+-. + ++ .++++..|+.||
T Consensus 361 lvvq~A~~g~~~~~~~~~~------~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g 434 (500)
T KOG0120|consen 361 LVVQRAIVGASNANVNFNI------SQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG 434 (500)
T ss_pred eEeehhhccchhccccCCc------cccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC
Confidence 9999877654432221110 00011122221 23445677888877743 1 11 278888999999
Q ss_pred CeeEEEEEee-------CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 389 SIVNTKLFEM-------NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 389 ~v~~~~i~~~-------~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
.|.+|.+... .+-|..||+|.+.++|++|++.|+|.++.||.+..+|--
T Consensus 435 ~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 435 AVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred ceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 9999999744 236689999999999999999999999999999998864
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=2.1e-16 Score=126.54 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=128.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC---CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK---NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~---~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~ 79 (446)
..+++|||+|||.++-|.||.++|-+||.|.+|.+.... +||||+|+++.||..|+.--++. .++|+.|+|++..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGY--dydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGY--DYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhccccc--ccCcceEEEEecc
Confidence 468899999999999999999999999999988886543 79999999999999999988887 8999999999975
Q ss_pred cccccccccC---CCCCCC----------CCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEec
Q 013267 80 HQELTTMEQN---AQGRGD----------EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 146 (446)
Q Consensus 80 ~~~~~~~~~~---~~~~~~----------~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~ 146 (446)
-......... ...+.. +.....+|.|.+||++-++++|++...+-|.+.-..+.+ .|+ +.|+|.
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r--Dg~-GvV~~~ 158 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR--DGV-GVVEYL 158 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec--ccc-eeeeee
Confidence 4431111111 111100 134567899999999999999999999999998766665 455 889999
Q ss_pred ChhhHHHHHHHhCCCCCCC
Q 013267 147 LRPSAVVARSSLQGRNIYD 165 (446)
Q Consensus 147 ~~~~A~~a~~~l~~~~~~~ 165 (446)
+.+|...|+..|+...+..
T Consensus 159 r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 159 RKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ehhhHHHHHHhhccccccC
Confidence 9999999999998876643
No 52
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=4.3e-16 Score=124.78 Aligned_cols=166 Identities=22% Similarity=0.250 Sum_probs=129.3
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC--CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
.++.|||+|||+ .+.+.+|.++|-+||.|..|.+.... ++||||+|++..+|..|+..-+|..+.|+.|+|++.+..
T Consensus 5 ~~~~iyvGNLP~-diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPG-DIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCc-chhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 456999999998 59999999999999999999875543 779999999999999999999999999999999998765
Q ss_pred CCCCCCCccccccCCcccccccccccccccCCC----ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEE
Q 013267 330 NITQGADTHEYMNSNLNRFNRNAAKNYRYCCSP----TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 405 (446)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~f 405 (446)
.--. .....|.. +-. .+-.......+| .-.|.|.+||...+..||++.-.+-|.|....+.+ .|.+.
T Consensus 84 r~s~-~~~G~y~g----ggr-gGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r---Dg~Gv 154 (241)
T KOG0105|consen 84 RSSS-DRRGSYSG----GGR-GGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR---DGVGV 154 (241)
T ss_pred Cccc-ccccccCC----CCC-CCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec---cccee
Confidence 3100 00000000 000 000000112223 34799999999999999999999999999999875 45999
Q ss_pred EEeCCHHHHHHHHHHhCCCccC
Q 013267 406 VLFETEEQATEALVCKHASSLG 427 (446)
Q Consensus 406 V~f~~~~~A~~A~~~l~~~~~~ 427 (446)
|+|...|+-..|+..|....+.
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeehhhHHHHHHhhcccccc
Confidence 9999999999999999998776
No 53
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.72 E-value=3.4e-16 Score=129.24 Aligned_cols=217 Identities=19% Similarity=0.229 Sum_probs=134.1
Q ss_pred CCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEE--ecCC----ceEEEEEecChhhHHHHHHHhCCCCCCCC-Cce
Q 013267 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF--QKSA----GFQALIQYQLRPSAVVARSSLQGRNIYDG-CCQ 169 (446)
Q Consensus 97 ~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~--~~~~----g~~afv~f~~~~~A~~a~~~l~~~~~~~~-~~~ 169 (446)
+..+..+||.+||-++...+|+.+|..|---+-..+- .+.+ -+ ||+.|.+.++|..|+..|||..++.. ..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pv-aFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPV-AFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccce-EEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 4457789999999999999999999998555543332 2221 35 99999999999999999999999775 578
Q ss_pred EEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCC------CC--CCCCCCCCCCCCCCCCCC----------CCcccchh
Q 013267 170 LDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKG------RP--SQSGYSEAGGMYAPGARA----------VAFPQMAN 231 (446)
Q Consensus 170 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 231 (446)
|++.+++............... ..+.+...... .. ...+..++.+.+.++... .+......
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~-~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPG-SSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eEeeehhcCcccccCCCCCCCC-CCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 9999988654322111111000 00001100000 00 001111111111111100 11111111
Q ss_pred hhhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-CCeEEEEeCCHHHHHHHHHH
Q 013267 232 AAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-PDHALVQMGDGFQAELAVHF 310 (446)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-~g~afV~f~~~~~A~~A~~~ 310 (446)
....+.+..+-...+.....-++||||-||.+ ++++|+|+.+|+.|.....++|-... ...||++|++.+.|..||..
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~-~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGP-NCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCC-CCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHH
Confidence 11111222222222333455678999999997 79999999999999988877775432 55899999999999999999
Q ss_pred hcCCee
Q 013267 311 LKGALL 316 (446)
Q Consensus 311 lng~~~ 316 (446)
|.|..+
T Consensus 268 lqg~~~ 273 (284)
T KOG1457|consen 268 LQGNLL 273 (284)
T ss_pred hhccee
Confidence 999876
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.69 E-value=1.3e-15 Score=125.78 Aligned_cols=174 Identities=22% Similarity=0.213 Sum_probs=127.5
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC------CCeEEEEeCCHHHHHHHHHHhcCCeeC---CcEEEE
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK------PDHALVQMGDGFQAELAVHFLKGALLF---GKRLEV 323 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~------~g~afV~f~~~~~A~~A~~~lng~~~~---g~~l~v 323 (446)
-+||||.+||. .+...||+.+|..|-..+...+.... +..|||.|.+.++|..||..|||..|. +..|++
T Consensus 34 VRTLFVSGLP~-DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 34 VRTLFVSGLPN-DVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred cceeeeccCCc-ccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46999999995 69999999999999888877665433 359999999999999999999999994 579999
Q ss_pred EEecCCCCCC--CCCc-----cccccC--C-ccc--------------c------cccccc-c---c-------------
Q 013267 324 NFSKHPNITQ--GADT-----HEYMNS--N-LNR--------------F------NRNAAK-N---Y------------- 356 (446)
Q Consensus 324 ~~~~~~~~~~--~~~~-----~~~~~~--~-~~~--------------~------~~~~~~-~---~------------- 356 (446)
++++...... ..+. ..+... . ..| . ..+..+ + +
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 9988765411 0000 000000 0 000 0 000000 0 0
Q ss_pred --------cccC---CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCc
Q 013267 357 --------RYCC---SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS 425 (446)
Q Consensus 357 --------~~~~---~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~ 425 (446)
+..+ ..-.+|||.||..+++|++|+.+|++|.....++|-..++...||++|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 0000 01137999999999999999999999999988888755567799999999999999999999987
Q ss_pred cC
Q 013267 426 LG 427 (446)
Q Consensus 426 ~~ 427 (446)
|-
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 65
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=7.7e-16 Score=125.49 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=75.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
.+++|||+|||.++++++|+++|++||.|.++.+..++ .+|||||+|.+.++|++|++.||+..|.|+.|+|.+++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 46799999999999999999999999999999998553 38899999999999999999999999999999999998
Q ss_pred Cccccc
Q 013267 438 LQSIRE 443 (446)
Q Consensus 438 ~~~~~~ 443 (446)
.+...+
T Consensus 113 ~~~~~~ 118 (144)
T PLN03134 113 DRPSAP 118 (144)
T ss_pred cCCCCC
Confidence 765443
No 56
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=4.7e-16 Score=131.56 Aligned_cols=163 Identities=24% Similarity=0.320 Sum_probs=132.0
Q ss_pred eEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCCCC
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQG 334 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~~~ 334 (446)
.+||++|| +...+.+|..+|..||.+..+.+. .+++||+|.+..+|..|+..+||..|+|..+.+.|++...-..+
T Consensus 3 rv~vg~~~-~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 3 RVYIGRLP-YRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred ceeecccC-CccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 69999999 479999999999999999998874 67999999999999999999999999998899999886432221
Q ss_pred CCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHH
Q 013267 335 ADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQA 414 (446)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A 414 (446)
.....+ ..+....+.......+.+.|.|+...+.+.+|.+.|+++|.+..... ..+++||+|.+.++|
T Consensus 79 ~~~~g~--------r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 79 RPRGGD--------RRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDA 146 (216)
T ss_pred CCCCCC--------ccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhh
Confidence 111000 00001111122233578889999999999999999999999966655 478999999999999
Q ss_pred HHHHHHhCCCccCCCeEEE
Q 013267 415 TEALVCKHASSLGGSIIRI 433 (446)
Q Consensus 415 ~~A~~~l~~~~~~g~~l~v 433 (446)
..|+..+++..+.|++|.+
T Consensus 147 ~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hhcchhccchhhcCceeee
Confidence 9999999999999999998
No 57
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.64 E-value=7.3e-15 Score=129.40 Aligned_cols=183 Identities=21% Similarity=0.280 Sum_probs=136.4
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEE--------EEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcE
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIR--------IKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKR 320 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~--------v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g~~ 320 (446)
++.|||+|||. .+|.+++.++|+.+|.|.. |++..+. +|-|.+.|...++...|+..|++..|.|+.
T Consensus 134 Nt~VYVsgLP~-DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPL-DITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCC-cccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 34799999996 6999999999999998853 7777765 889999999999999999999999999999
Q ss_pred EEEEEecCCCCCC-CCCcccc-ccCCcccccccccc--------cccccCCCccEEEEeCCCC----CCC-------HHH
Q 013267 321 LEVNFSKHPNITQ-GADTHEY-MNSNLNRFNRNAAK--------NYRYCCSPTKMIHLSTLPQ----DVT-------EEE 379 (446)
Q Consensus 321 l~v~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~l~v~nlp~----~~t-------~~~ 379 (446)
|+|+.++-+..-. ....+.- ......+......+ .........++|.|+|+=. ..+ +++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 9999876543210 0000000 00000000000000 0011223457899999844 222 578
Q ss_pred HHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 380 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 380 l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
|++-|..||.|.+|.|+.....|-+.|.|.+.++|..|++.|+|.+++||.|..+..
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 888999999999999997777999999999999999999999999999999987754
No 58
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.64 E-value=1.8e-14 Score=137.33 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=62.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 365 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 365 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
+|.+.|+|++++.+||.++|..|-.+....+++.++ .|.|.|.|++.++|.+|...|++++|.++.+.|..
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 899999999999999999999998776655543333 56999999999999999999999999999998864
No 59
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.62 E-value=1.8e-15 Score=136.72 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=129.3
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.+..|||++|++++|++.|+++|.+||.|.+|.+++| ++|+||+|.+++...+++..- .+.+.|+.|.+.-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~---~h~~dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNAR---THKLDGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccc---ccccCCcccccee
Confidence 3568999999999999999999999999999999987 499999999999988887643 3469999988887
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEE-----ecCCceEEEEEecChhhHH
Q 013267 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAV 152 (446)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afv~f~~~~~A~ 152 (446)
+-+........ ....+..+||++||.++++++++++|.+||.|.++.++ .+.+|| +||.|.+.+.+.
T Consensus 82 av~r~~~~~~~-------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgF-gfv~~~~e~sVd 153 (311)
T KOG4205|consen 82 AVSREDQTKVG-------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGF-GFVTFDSEDSVD 153 (311)
T ss_pred ccCcccccccc-------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccc-eeeEeccccccc
Confidence 65543322221 12256679999999999999999999999998887765 377898 999999999999
Q ss_pred HHHHHhCCCCCCCCCceEEEeeeCCC
Q 013267 153 VARSSLQGRNIYDGCCQLDIQFSNLD 178 (446)
Q Consensus 153 ~a~~~l~~~~~~~~~~~l~v~~~~~~ 178 (446)
+++.. .-+.+.++ .+.+..+.+.
T Consensus 154 kv~~~-~f~~~~gk--~vevkrA~pk 176 (311)
T KOG4205|consen 154 KVTLQ-KFHDFNGK--KVEVKRAIPK 176 (311)
T ss_pred eeccc-ceeeecCc--eeeEeeccch
Confidence 99854 55566666 5566655544
No 60
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.62 E-value=2.4e-15 Score=135.94 Aligned_cols=168 Identities=15% Similarity=0.270 Sum_probs=139.2
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEe
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~ 326 (446)
..+.|+|++|+. .++++.|++.|.+||.|..+.++.+. ++|+||+|++++....++. ...+.|.|+.|.+..+
T Consensus 5 ~~~KlfiGgisw-~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSW-ETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCc-cccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec
Confidence 456999999996 69999999999999999999999865 7899999999999888877 5567788998888876
Q ss_pred cCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ce
Q 013267 327 KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KK 402 (446)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g 402 (446)
.+......... -...+.|+|+.||.++++++++++|.+||.|..+.++.++. ++
T Consensus 83 v~r~~~~~~~~----------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rg 140 (311)
T KOG4205|consen 83 VSREDQTKVGR----------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRG 140 (311)
T ss_pred cCccccccccc----------------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccccccc
Confidence 65432111110 01357999999999999999999999999999998885543 88
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcccccc
Q 013267 403 QALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIREN 444 (446)
Q Consensus 403 ~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~ 444 (446)
|+||.|.++++..+++ ...-..|.|+.+.|--|.|+.+.+.
T Consensus 141 Fgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 141 FGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ceeeEeccccccceec-ccceeeecCceeeEeeccchhhccc
Confidence 9999999999999976 6677778899999999999887653
No 61
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.61 E-value=6.3e-15 Score=120.13 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=71.3
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.+++|||+|||+++||++|+++|++||.|.+|.++.+ ++||||+|.+.++|++|++.|++. .++|++|+|++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~--~i~Gr~l~V~~ 110 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK--ELNGRHIRVNP 110 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEe
Confidence 5788999999999999999999999999999999865 599999999999999999999988 89999999999
Q ss_pred ccccc
Q 013267 78 SSHQE 82 (446)
Q Consensus 78 ~~~~~ 82 (446)
+....
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 86543
No 62
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.58 E-value=3e-13 Score=124.96 Aligned_cols=256 Identities=18% Similarity=0.209 Sum_probs=159.1
Q ss_pred CcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe---cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEee
Q 013267 98 NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ---KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174 (446)
Q Consensus 98 ~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~---~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~ 174 (446)
.....|.+.+|||+.|+++|.++|+.. .|..+.+.+ +..|- |||+|.+.+++++|++. +...+..+ =|.|-.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGe-A~Ve~~seedv~~Alkk-dR~~mg~R--YIEVf~ 82 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGE-AYVEFTSEEDVEKALKK-DRESMGHR--YIEVFT 82 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcc-eEEEeechHHHHHHHHh-hHHHhCCc--eEEEEc
Confidence 344568899999999999999999996 577655543 56775 99999999999999976 33333222 223322
Q ss_pred eCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcc
Q 013267 175 SNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRC 254 (446)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (446)
+..... .|-+. +. ++.......
T Consensus 83 ~~~~e~--------d~~~~-~~-------------------------------------------------g~~s~~~d~ 104 (510)
T KOG4211|consen 83 AGGAEA--------DWVMR-PG-------------------------------------------------GPNSSANDG 104 (510)
T ss_pred cCCccc--------ccccc-CC-------------------------------------------------CCCCCCCCc
Confidence 221110 00000 00 000011223
Q ss_pred eEEEeCCCCCCCCHHHHHHHhcccCceEE-EEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIR-IKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~G~v~~-v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
+|.+.+|| +.++++||.++|+-.--|.. +.++.++ .|.|||+|++.+.|++|+. -|...|+-|-|.|-.+...
T Consensus 105 vVRLRGLP-fscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~ 182 (510)
T KOG4211|consen 105 VVRLRGLP-FSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRA 182 (510)
T ss_pred eEEecCCC-ccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHH
Confidence 89999999 58999999999998776655 3344444 6699999999999999998 5556666666655532221
Q ss_pred CCC------------CCCC--------cccccc-----CCccccc-------------------------------cc--
Q 013267 330 NIT------------QGAD--------THEYMN-----SNLNRFN-------------------------------RN-- 351 (446)
Q Consensus 330 ~~~------------~~~~--------~~~~~~-----~~~~~~~-------------------------------~~-- 351 (446)
... +.+. .+++.. .+..++. .+
T Consensus 183 e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~ 262 (510)
T KOG4211|consen 183 EVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVS 262 (510)
T ss_pred HHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCC
Confidence 110 0000 000000 0000000 00
Q ss_pred -cccc------ccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEE--ee-CCceEEEEEeCCHHHHHHHHH
Q 013267 352 -AAKN------YRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF--EM-NGKKQALVLFETEEQATEALV 419 (446)
Q Consensus 352 -~~~~------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~--~~-~~~g~~fV~f~~~~~A~~A~~ 419 (446)
...+ +.+....+..++.++||...++-++..+|+..-.+ .+.|- ++ +..|-|.|+|.|.++|..|+.
T Consensus 263 ~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 263 SGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0000 01112223789999999999999999999976554 44442 22 237799999999999999993
No 63
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.9e-14 Score=103.01 Aligned_cols=67 Identities=36% Similarity=0.512 Sum_probs=62.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee---CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEE
Q 013267 366 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM---NGKKQALVLFETEEQATEALVCKHASSLGGSIIR 432 (446)
Q Consensus 366 l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 432 (446)
|||+|||.++|+++|+++|++||.|..+.+..+ +.+++|||+|.+.++|++|++.++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999875 2378999999999999999999999999999986
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.54 E-value=9.7e-14 Score=125.72 Aligned_cols=232 Identities=14% Similarity=0.118 Sum_probs=177.1
Q ss_pred EEEcCCCCCcCHHHHHHhhc-CCCceeEEEEE----ecCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCC
Q 013267 103 VTIHHMLYPITVEVLHQVFS-PHGFVEKIVTF----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNL 177 (446)
Q Consensus 103 v~v~nl~~~~t~~~l~~~f~-~~G~i~~i~~~----~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~ 177 (446)
+||.|+|+++.+++|+++|. +.|+|+-|.++ .+++|+ |.|+|.+++.+++|++.|+...+.++ +|.++....
T Consensus 47 vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGc-avVEFk~~E~~qKa~E~lnk~~~~GR--~l~vKEd~d 123 (608)
T KOG4212|consen 47 VFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGC-AVVEFKDPENVQKALEKLNKYEVNGR--ELVVKEDHD 123 (608)
T ss_pred EEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCc-eEEEeeCHHHHHHHHHHhhhccccCc--eEEEeccCc
Confidence 99999999999999999997 57999988776 388898 99999999999999999999999888 555544321
Q ss_pred CceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEE
Q 013267 178 DELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVL 257 (446)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (446)
..++... .. .....+.|
T Consensus 124 ----------~q~~~~~----------------------------------------------~~-------~r~g~~~f 140 (608)
T KOG4212|consen 124 ----------EQRDQYG----------------------------------------------RI-------VRDGGGGF 140 (608)
T ss_pred ----------hhhhhhh----------------------------------------------he-------eeccCccc
Confidence 1111000 00 00111678
Q ss_pred EeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCCC
Q 013267 258 VSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQ 333 (446)
Q Consensus 258 v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~~ 333 (446)
+.++.. ..-..-|...|+--|.+.+-....|. ++..+++|++.-.+..++..++......+.+++ +..
T Consensus 141 ~~~~~~-q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~-f~p------ 212 (608)
T KOG4212|consen 141 GGGGGV-QGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHI-FSP------ 212 (608)
T ss_pred ccCcce-ecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccC-CCC------
Confidence 888884 57777788888777766555455444 567899999999999999877766555565554 222
Q ss_pred CCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee---CCceEEEEEeCC
Q 013267 334 GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM---NGKKQALVLFET 410 (446)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~g~~fV~f~~ 410 (446)
|.-..+||.||...+....|.+.|.-.|.|+.+.+--+ +++|++.++|..
T Consensus 213 ---------------------------Pl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~h 265 (608)
T KOG4212|consen 213 ---------------------------PLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDH 265 (608)
T ss_pred ---------------------------CccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecc
Confidence 11247899999999999999999999999999988544 348899999999
Q ss_pred HHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 411 EEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 411 ~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
+-+|..||..+++.-+..++..+..
T Consensus 266 pveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 266 PVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred hHHHHHHHHhhccCCCccccceeec
Confidence 9999999999998777777666554
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=3.4e-14 Score=101.71 Aligned_cols=65 Identities=26% Similarity=0.469 Sum_probs=61.7
Q ss_pred EEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 8 l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
|||+|||+++|+++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.+++. .++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~--~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGK--KINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTE--EETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCC--EECccCcC
Confidence 799999999999999999999999999999985 489999999999999999999998 99999985
No 66
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=6.1e-14 Score=111.88 Aligned_cols=79 Identities=34% Similarity=0.466 Sum_probs=73.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCC
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 331 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~ 331 (446)
..+.|||+||+. .+++.||...|..||++..|+|-.+++|||||+|+++.||..|+..|+|..|+|..+.|++++....
T Consensus 9 ~~~kVYVGnL~~-~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGS-RATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCC-CcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 356999999995 7999999999999999999999999899999999999999999999999999999999999886643
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=6.4e-14 Score=122.58 Aligned_cols=80 Identities=19% Similarity=0.328 Sum_probs=73.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee-CC-ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM-NG-KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~-~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.++|||+|||+..-|-||+..|.+||.|.+|.|+-+ ++ ||||||.|++.+||++|..+|||..+.||+|.|-.++.+.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhh
Confidence 479999999999999999999999999999998744 33 9999999999999999999999999999999999998875
Q ss_pred cc
Q 013267 441 IR 442 (446)
Q Consensus 441 ~~ 442 (446)
.-
T Consensus 176 ~n 177 (376)
T KOG0125|consen 176 HN 177 (376)
T ss_pred cc
Confidence 43
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2e-13 Score=118.80 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=70.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC-CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
.++|||+|||..+|+++|+++|+.||.|+++.+..++ .+|||||+|.++++|..|+ .|||..|.|+.|.|+.+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 4799999999999999999999999999999998765 3789999999999999999 5999999999999999974
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.6e-13 Score=115.34 Aligned_cols=79 Identities=20% Similarity=0.342 Sum_probs=74.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
..+++|.|.||+.+++|++|+++|.+||.|.++.+..++. +|||||.|.+.++|++||+.|||.-+++--|+|+||
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 3578999999999999999999999999999999987754 889999999999999999999999999999999999
Q ss_pred cCc
Q 013267 437 QLQ 439 (446)
Q Consensus 437 ~~~ 439 (446)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 997
No 70
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1e-13 Score=117.43 Aligned_cols=156 Identities=14% Similarity=0.240 Sum_probs=124.6
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccccccc
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTM 86 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~~~ 86 (446)
.+||+.||+.+.+.||..+|+.||.+.++.+... ++||+|.+..+|..|+..+++. .+.|-.+.++++........
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g--f~fv~fed~rda~Dav~~l~~~--~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKNG--FGFVEFEDPRDADDAVHDLDGK--ELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeecc--cceeccCchhhhhcccchhcCc--eecceeeeeecccccccccC
Confidence 5899999999999999999999999998888765 7899999999999999999998 88888899998765322221
Q ss_pred ccCCC-------CCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhhHHHHHHHhC
Q 013267 87 EQNAQ-------GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQ 159 (446)
Q Consensus 87 ~~~~~-------~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~ 159 (446)
....+ ........-.++.|.+++..+.+.+|.+.|.++|.+..... ..++ +||+|.+.++|.+|++.|+
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~-~~v~Fs~~~da~ra~~~l~ 154 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNF-AFVEFSEQEDAKRALEKLD 154 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccc-cceeehhhhhhhhcchhcc
Confidence 11110 00111233345788999999999999999999999954433 4565 9999999999999999999
Q ss_pred CCCCCCCCceEEE
Q 013267 160 GRNIYDGCCQLDI 172 (446)
Q Consensus 160 ~~~~~~~~~~l~v 172 (446)
+..+.+. .|.+
T Consensus 155 ~~~~~~~--~l~~ 165 (216)
T KOG0106|consen 155 GKKLNGR--RISV 165 (216)
T ss_pred chhhcCc--eeee
Confidence 9999887 4444
No 71
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=2.3e-13 Score=97.34 Aligned_cols=65 Identities=23% Similarity=0.452 Sum_probs=59.0
Q ss_pred EEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 8 l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
|+|+|||+++|+++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|++.+++. .++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~--~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGK--EIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTE--EETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCc--EECCEEcC
Confidence 799999999999999999999999999999987 489999999999999999999866 89999875
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=3.5e-13 Score=96.34 Aligned_cols=67 Identities=27% Similarity=0.462 Sum_probs=60.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC---ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEE
Q 013267 366 IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIR 432 (446)
Q Consensus 366 l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~---~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 432 (446)
|||+|||.++++++|+++|+.||.|..+.+..++. +++|||+|.++++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999987643 78999999999999999999999999999885
No 73
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.46 E-value=5.4e-12 Score=111.51 Aligned_cols=194 Identities=15% Similarity=0.190 Sum_probs=130.3
Q ss_pred EEEEEcCCCCCcCHHHHHHhhcCCCcee--------EEEEEe----cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCc
Q 013267 101 LLVTIHHMLYPITVEVLHQVFSPHGFVE--------KIVTFQ----KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCC 168 (446)
Q Consensus 101 ~~v~v~nl~~~~t~~~l~~~f~~~G~i~--------~i~~~~----~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~ 168 (446)
..|||.|||.++|.+++.++|+++|.|. +|.+++ .-+|- |+|.|...+++..|++.|++..+.|.
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGD-aLc~y~K~ESVeLA~~ilDe~~~rg~-- 211 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGD-ALCCYIKRESVELAIKILDEDELRGK-- 211 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCc-eEEEeecccHHHHHHHHhCcccccCc--
Confidence 3499999999999999999999999987 366765 44565 99999999999999999999999766
Q ss_pred eEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCc
Q 013267 169 QLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGIT 248 (446)
Q Consensus 169 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (446)
+|+|+.++-..-.......+ ...+.+.. .+.+..+.-.-+ ..+.. +...
T Consensus 212 ~~rVerAkfq~Kge~~~~~k-~k~k~~~~---kk~~k~q~k~~d-------------------------w~pd~--~~~s 260 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKK-EKGKCKDK---KKLKKQQQKLLD-------------------------WRPDR--DDPS 260 (382)
T ss_pred EEEEehhhhhhccCcCcccc-cccccccH---HHHHHHHHhhcc-------------------------cCCCc--cccc
Confidence 88998886443221100000 00000000 000000000000 00000 0111
Q ss_pred cCCCcceEEEeCCC-CC--CCC-------HHHHHHHhcccCceEEEEEeeCC-CCeEEEEeCCHHHHHHHHHHhcCCeeC
Q 013267 249 GTNDRCTVLVSNLN-SD--RID-------EDKLFNLFSLYGNIIRIKLLRNK-PDHALVQMGDGFQAELAVHFLKGALLF 317 (446)
Q Consensus 249 ~~~~~~~l~v~nl~-~~--~~~-------~~~l~~~F~~~G~v~~v~i~~~~-~g~afV~f~~~~~A~~A~~~lng~~~~ 317 (446)
.....++|.+.|+= |+ ..+ .++|.+-+.+||.|.+|.|...+ .|-+-|.|.+.++|..+|+.|+|+.|.
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fd 340 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFD 340 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeec
Confidence 12233578888864 11 122 34677889999999999887654 889999999999999999999999999
Q ss_pred CcEEEEEEecC
Q 013267 318 GKRLEVNFSKH 328 (446)
Q Consensus 318 g~~l~v~~~~~ 328 (446)
||+|..+....
T Consensus 341 gRql~A~i~DG 351 (382)
T KOG1548|consen 341 GRQLTASIWDG 351 (382)
T ss_pred ceEEEEEEeCC
Confidence 99999986543
No 74
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=4.5e-13 Score=117.34 Aligned_cols=78 Identities=23% Similarity=0.372 Sum_probs=72.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC---CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecC
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK---PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 328 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~ 328 (446)
..+.|+|+||| +...+.||+.+|.+||.|.+|.|+.+. |||+||+|++.+||.+|-++|||..+.||+|.|..++.
T Consensus 95 ~pkRLhVSNIP-FrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIP-FRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCC-ccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 34689999999 589999999999999999999998876 88999999999999999999999999999999998876
Q ss_pred CC
Q 013267 329 PN 330 (446)
Q Consensus 329 ~~ 330 (446)
..
T Consensus 174 rV 175 (376)
T KOG0125|consen 174 RV 175 (376)
T ss_pred hh
Confidence 53
No 75
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=1.4e-12 Score=94.56 Aligned_cols=76 Identities=26% Similarity=0.377 Sum_probs=69.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC--CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecC
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 328 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~ 328 (446)
-++.|||.||| +.+|.++++++|..||.|..|+|=..+ +|.|||.|++..+|.+|++.|+|..+.++-+.|-|-.+
T Consensus 17 vnriLyirNLp-~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLP-FKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCC-ccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 45699999999 589999999999999999999985544 89999999999999999999999999999999998554
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4.6e-13 Score=106.89 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=71.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.+.|||+||+..+++.||+..|..||.+.+|-|.. +-.|||||+|+++.+|+.|+..|+|+.|-|.+|.|++++-+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 57999999999999999999999999999888875 458899999999999999999999999999999999987543
No 77
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=5.5e-13 Score=122.71 Aligned_cols=77 Identities=13% Similarity=0.267 Sum_probs=73.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCH--HHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETE--EQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~--~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
+-+|||+||+..++++||+..|+.||.|.+|.|++.++||||||+|.+. +++.+||..|||..+.|+.|+|.-|+++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 4689999999999999999999999999999999888899999999987 7899999999999999999999999875
No 78
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=9.2e-13 Score=95.43 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=71.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC-CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
++.|||+|||.++|.+++.++|.+||.|..++|=..+ .+|.|||-|+++.+|.+|+..|+|+.+.++-|.|-|-++.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 5799999999999999999999999999999996433 4999999999999999999999999999999999887654
No 79
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=5.9e-13 Score=115.95 Aligned_cols=73 Identities=23% Similarity=0.292 Sum_probs=68.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc---CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA---KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~---~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
.++|||+|||+++||++|+++|+.||.|.+|.|..+ +++|||+|.+.++|..|+. |++. .+.|++|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~--~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGA--TIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCC--eeCCceEEEEeccC
Confidence 589999999999999999999999999999999887 4899999999999999996 8888 89999999998754
No 80
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.1e-13 Score=101.23 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=68.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
..|.+|||+||+..++|+.|+++|+.+|+|..|.+--|+ |||||+|.+.++|..|++++++. .++.++|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt--rLddr~ir~D 111 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT--RLDDRPIRID 111 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccC--cccccceeee
Confidence 358899999999999999999999999999988875554 89999999999999999999999 8999999999
Q ss_pred ec
Q 013267 77 FS 78 (446)
Q Consensus 77 ~~ 78 (446)
|.
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 84
No 81
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=1.4e-12 Score=88.40 Aligned_cols=56 Identities=20% Similarity=0.404 Sum_probs=51.4
Q ss_pred HHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 380 IVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 380 l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
|+++|++||.|.++.+.+++ +++|||+|.+.++|.+|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998543 599999999999999999999999999999999997
No 82
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.8e-12 Score=109.11 Aligned_cols=77 Identities=35% Similarity=0.417 Sum_probs=72.8
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEe
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~ 326 (446)
.+++|.|.||+ +.+++++|.++|.+||.|.++.|..++ +|||||.|.+.++|++|+..|||.-+..--|+|+|+
T Consensus 188 D~~tvRvtNLs-ed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLS-EDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCc-cccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 56699999999 579999999999999999999999987 899999999999999999999999999999999999
Q ss_pred cCC
Q 013267 327 KHP 329 (446)
Q Consensus 327 ~~~ 329 (446)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 975
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=3.2e-12 Score=120.16 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=110.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
.++++|+|-|||.+|++++|+.+|+.||+|.+|+.-+. ++..||+|.+..+|++|++.|++. .+.|+.|........
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~--~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRR--EIAGKRIKRPGGARR 150 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHH--HhhhhhhcCCCcccc
Confidence 47799999999999999999999999999999777554 589999999999999999999998 899998883221111
Q ss_pred ccccccc-----------CCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhh
Q 013267 82 ELTTMEQ-----------NAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150 (446)
Q Consensus 82 ~~~~~~~-----------~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~ 150 (446)
.+..... .+...+...... ++ +.|++......+...+.-+|.+.. .-...-+. +-++.|.+..+
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~--~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~h-q~~~~~~~~~s 225 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQ--LF-GMLSPTRSSILLEHISSVDGSSPG-RETPLLNH-QRFVEFADNRS 225 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCc--ce-eeeccchhhhhhhcchhccCcccc-ccccchhh-hhhhhhccccc
Confidence 1100000 001111111111 22 228888888778888888888876 33322112 36888888888
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeeeCC
Q 013267 151 AVVARSSLQGRNIYDGCCQLDIQFSNL 177 (446)
Q Consensus 151 A~~a~~~l~~~~~~~~~~~l~v~~~~~ 177 (446)
+..+...+ |..+.+. ...+.++..
T Consensus 226 ~a~~~~~~-G~~~s~~--~~v~t~S~~ 249 (549)
T KOG4660|consen 226 YAFSEPRG-GFLISNS--SGVITFSGP 249 (549)
T ss_pred hhhcccCC-ceecCCC--CceEEecCC
Confidence 86655533 4444444 345555554
No 84
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.35 E-value=6.3e-12 Score=85.20 Aligned_cols=56 Identities=30% Similarity=0.586 Sum_probs=51.9
Q ss_pred HHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEe
Q 013267 271 LFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326 (446)
Q Consensus 271 l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~ 326 (446)
|+++|++||.|..+.+..+.+++|||+|.+.++|..|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998875699999999999999999999999999999999986
No 85
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.4e-12 Score=97.11 Aligned_cols=76 Identities=20% Similarity=0.177 Sum_probs=67.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
..|++|||+||..-++|++|.++|+++|.|..+..=-++. =|||||+|-+.++|+.|++.++|..++.+.|.+.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4589999999999999999999999999998876633322 459999999999999999999999999999999873
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.35 E-value=5.5e-12 Score=107.98 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=68.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC-ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG-KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
+.+|+|+||+..+|+++|+++|+.||.|.+|.+.+++. +++|||+|.++++|+.|+ .|+|..|.+++|.|.-..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 57999999999999999999999999999999997654 679999999999999999 899999999999998755
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=5.9e-12 Score=90.26 Aligned_cols=70 Identities=33% Similarity=0.520 Sum_probs=64.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC--CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 365 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN--GKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 365 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~--~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
+|+|+|||..+++++|+++|++||.|..+.+..++ .+++|||+|.+.++|.+|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999988543 36899999999999999999999999999999873
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=5.4e-12 Score=108.06 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=69.5
Q ss_pred CCCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC---CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK---NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 1 ~~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~---~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
|.+...+|+|+||++.+||+||+++|+.||+|.+|.+++++ ++|||+|.+.++|..|+. |++. .|.+++|.|..
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa--~l~d~~I~It~ 77 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGA--TIVDQRVCITR 77 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCC--eeCCceEEEEe
Confidence 66777899999999999999999999999999999999875 789999999999999994 8888 89999999986
Q ss_pred cc
Q 013267 78 SS 79 (446)
Q Consensus 78 ~~ 79 (446)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 44
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=5.9e-12 Score=90.26 Aligned_cols=68 Identities=24% Similarity=0.434 Sum_probs=63.4
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC----CeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK----NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~----~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
+|+|+|||..+++++|+++|.+||+|..+.+..+. ++|||+|.+.++|.+|++.+++. .++|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~--~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGT--KLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCc--EECCEEEeeC
Confidence 48999999999999999999999999999999876 99999999999999999999987 7999998763
No 90
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.1e-12 Score=108.28 Aligned_cols=84 Identities=25% Similarity=0.340 Sum_probs=78.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee----CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM----NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~----~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
.++|||++|..+++|.-|...|-+||.|..+.++-+ +.+|||||+|.-.++|.+||..||+..|-||.|+|-||+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 479999999999999999999999999999999733 4599999999999999999999999999999999999999
Q ss_pred ccccccCC
Q 013267 439 QSIRENSQ 446 (446)
Q Consensus 439 ~~~~~~~~ 446 (446)
.-+|+-||
T Consensus 90 ~kikegsq 97 (298)
T KOG0111|consen 90 EKIKEGSQ 97 (298)
T ss_pred ccccCCCC
Confidence 99998886
No 91
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.32 E-value=1.6e-11 Score=109.76 Aligned_cols=278 Identities=17% Similarity=0.219 Sum_probs=170.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccc----eeEEEEEcc--CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGV----ITKLVMLRA--KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~----i~~~~i~~~--~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
...+|..++||+--+..+|..+|+.... +.=|...-. .|+|.|.|.+.|.-.-|+++... .+.++.|.|--
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkh---h~g~ryievYk 135 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKH---HMGTRYIEVYK 135 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhh---hccCCceeeec
Confidence 3467889999999999999999976532 211222222 38899999999998889887654 48888888876
Q ss_pred cccccccc-cccCCC--CCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCC----ceeEEEEEe----cCCceEEEEEec
Q 013267 78 SSHQELTT-MEQNAQ--GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHG----FVEKIVTFQ----KSAGFQALIQYQ 146 (446)
Q Consensus 78 ~~~~~~~~-~~~~~~--~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G----~i~~i~~~~----~~~g~~afv~f~ 146 (446)
+..++... ....+. ...-+...-..|.+.+||++.++.++.++|.+-. ..+.|.+++ +.-|- |||.|.
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGd-AFvlfa 214 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGD-AFVLFA 214 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccc-eEEEec
Confidence 55544221 111111 1111122334478899999999999999997543 344666655 44565 999999
Q ss_pred ChhhHHHHHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 013267 147 LRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAF 226 (446)
Q Consensus 147 ~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (446)
..++|+.|+.+..+ .+.-+ .|+.-+.....++.... +....|-.+ ...+...++ .
T Consensus 215 ~ee~aq~aL~khrq-~iGqR----YIElFRSTaaEvqqvln--r~~s~pLi~-------------~~~sp~~p~-----~ 269 (508)
T KOG1365|consen 215 CEEDAQFALRKHRQ-NIGQR----YIELFRSTAAEVQQVLN--REVSEPLIP-------------GLTSPLLPG-----G 269 (508)
T ss_pred CHHHHHHHHHHHHH-HHhHH----HHHHHHHhHHHHHHHHH--hhccccccC-------------CCCCCCCCC-----C
Confidence 99999999987332 22111 11111111000000000 000000000 000000000 0
Q ss_pred ccchhhhhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCc-eEE--EEEeeCC----CCeEEEEeC
Q 013267 227 PQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGN-IIR--IKLLRNK----PDHALVQMG 299 (446)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~-v~~--v~i~~~~----~g~afV~f~ 299 (446)
|. ...|+ ....-.|.+.+|| +..+.++|.++|..|.. |+. |.++-+. .|.|||+|.
T Consensus 270 p~------------~~~p~----~~~kdcvRLRGLP-y~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~ 332 (508)
T KOG1365|consen 270 PA------------RLVPP----TRSKDCVRLRGLP-YEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMR 332 (508)
T ss_pred cc------------ccCCC----CCCCCeeEecCCC-hhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhh
Confidence 00 00111 1223389999999 68999999999999873 333 5666554 679999999
Q ss_pred CHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 300 DGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 300 ~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
+.++|..|+...+++...+|-|.|-.+.
T Consensus 333 nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 333 NAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred hhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 9999999999999888877877776544
No 92
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.31 E-value=3e-11 Score=112.19 Aligned_cols=169 Identities=22% Similarity=0.323 Sum_probs=117.8
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
.++|||+|||. .+++++|+++|..||.|..+.+..+. +|+|||+|.+.++|..|++.++|..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~-~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPY-DVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCC-CCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 46999999995 79999999999999999999887763 7899999999999999999999999999999999976
Q ss_pred C-CCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ce
Q 013267 328 H-PNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KK 402 (446)
Q Consensus 328 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g 402 (446)
. .......... ... . ..................+++.+++..++..++...|..+|.+....+..... ..
T Consensus 194 ~~~~~~~~~~~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (306)
T COG0724 194 PASQPRSELSNN-LDA-S---FAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKS 268 (306)
T ss_pred cccccccccccc-cch-h---hhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCccccc
Confidence 4 1100000000 000 0 00000111112334568999999999999999999999999997776653322 22
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccC
Q 013267 403 QALVLFETEEQATEALVCKHASSLG 427 (446)
Q Consensus 403 ~~fV~f~~~~~A~~A~~~l~~~~~~ 427 (446)
..++.+.....+.............
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (306)
T COG0724 269 RSFVGNEASKDALESNSRGNKKKIL 293 (306)
T ss_pred ccccchhHHHhhhhhhccccceeec
Confidence 3335555555555555444443333
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=7.1e-12 Score=115.51 Aligned_cols=74 Identities=19% Similarity=0.444 Sum_probs=69.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc--CCeEEEEecCh--hHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA--KNQALLQMQDV--PSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~--~~~afV~F~~~--~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
..+||||||++++|++||...|.+||.|.+|.|++. ||||||+|.+. +++.+||+.|++. .++|+.|+|+.+++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGA--EWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGC--VWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCC--eecCceeEEeeccH
Confidence 467999999999999999999999999999999964 69999999987 7899999999999 99999999998866
No 94
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=5.2e-12 Score=106.07 Aligned_cols=73 Identities=25% Similarity=0.372 Sum_probs=65.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
-+.|||++|+++.+.++|+++|++||+|++..|+.|+ ||+||+|.+.++|.+|.+.-+ +.|+||+-.|+.+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~---piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN---PIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC---Ccccccccccchh
Confidence 4789999999999999999999999999999999774 999999999999999977544 4699999999976
Q ss_pred cc
Q 013267 79 SH 80 (446)
Q Consensus 79 ~~ 80 (446)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 44
No 95
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.3e-12 Score=104.89 Aligned_cols=85 Identities=18% Similarity=0.355 Sum_probs=77.4
Q ss_pred CCCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 1 ~~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
|+...|+|||++|-.++||.-|...|-+||.|.+|.+.-| |+||||+|...|||..||..+|.. .+.||.|+
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes--EL~Grtir 83 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES--ELFGRTIR 83 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchh--hhcceeEE
Confidence 5667899999999999999999999999999999998744 799999999999999999999999 99999999
Q ss_pred EEecccccccccc
Q 013267 75 VQFSSHQELTTME 87 (446)
Q Consensus 75 v~~~~~~~~~~~~ 87 (446)
|+++.+.+....+
T Consensus 84 VN~AkP~kikegs 96 (298)
T KOG0111|consen 84 VNLAKPEKIKEGS 96 (298)
T ss_pred EeecCCccccCCC
Confidence 9999987665443
No 96
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=1.7e-11 Score=87.51 Aligned_cols=67 Identities=34% Similarity=0.510 Sum_probs=61.6
Q ss_pred EeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 368 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 368 v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
|+|||..+++++|+++|++||.|..+.+..++. +++|||+|.+.++|.+|++.+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 578999999999999999999999999986543 7899999999999999999999999999999874
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=3.6e-11 Score=86.63 Aligned_cols=71 Identities=32% Similarity=0.545 Sum_probs=65.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 365 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 365 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
+|+|+|||..+++++|+++|+.||.|..+.+.... .+++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999998654 378999999999999999999999999999999875
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=3.9e-11 Score=86.41 Aligned_cols=69 Identities=29% Similarity=0.517 Sum_probs=64.0
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
+|+|+|||+.+++++|+++|+.+|.|..+.+..+ +++|||+|.+.++|+.|++.+++. .++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~--~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGK--ELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEeC
Confidence 4899999999999999999999999999999876 489999999999999999999988 79999998864
No 99
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.24 E-value=9.1e-11 Score=108.89 Aligned_cols=127 Identities=18% Similarity=0.284 Sum_probs=101.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
..+|||+|||.++|+++|+++|..||.|..+.+..++ |+|||+|.+.++|..|+..+++. .+.|++|.|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~--~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGK--ELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCC--eECCceeEeecc
Confidence 4899999999999999999999999999999998774 99999999999999999999988 899999999996
Q ss_pred cc----ccccccc-c------CCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEE
Q 013267 79 SH----QELTTME-Q------NAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF 133 (446)
Q Consensus 79 ~~----~~~~~~~-~------~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~ 133 (446)
.. ....... . ..............+++.+++..++..++...|..+|.+....+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 42 1111100 0 001111123344558999999999999999999999999665554
No 100
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=6e-11 Score=102.91 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=77.3
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee----CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 359 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM----NGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~----~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
.+.|-++|||+-|+.+++|+.|+..|+.||.|+.+.++.+ +.+|||||+|+++.+-.+|.+...|.+|+|++|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3457799999999999999999999999999999999866 459999999999999999999999999999999999
Q ss_pred eecCcccc
Q 013267 435 FSQLQSIR 442 (446)
Q Consensus 435 ~a~~~~~~ 442 (446)
+-.-+.+|
T Consensus 177 vERgRTvk 184 (335)
T KOG0113|consen 177 VERGRTVK 184 (335)
T ss_pred eccccccc
Confidence 98877665
No 101
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=2.6e-11 Score=92.39 Aligned_cols=78 Identities=26% Similarity=0.351 Sum_probs=70.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC--C--ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN--G--KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~--~--~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
++.|+|.++...++|+||.+.|..||.|+.+.+--+. + +|||+|+|.+.++|++|+..+||..|-|..|.|.|+=.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 6799999999999999999999999999999885332 2 88999999999999999999999999999999998754
Q ss_pred cc
Q 013267 439 QS 440 (446)
Q Consensus 439 ~~ 440 (446)
+.
T Consensus 152 ~g 153 (170)
T KOG0130|consen 152 KG 153 (170)
T ss_pred cC
Confidence 43
No 102
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=104.07 Aligned_cols=277 Identities=12% Similarity=0.121 Sum_probs=158.9
Q ss_pred cEEEEEEcCCCCCcCHHHHHHhhcCC-----CceeEEEEEecCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEe
Q 013267 99 RILLVTIHHMLYPITVEVLHQVFSPH-----GFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQ 173 (446)
Q Consensus 99 ~~~~v~v~nl~~~~t~~~l~~~f~~~-----G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~ 173 (446)
....+...++|+..++.++..+|.-- |.......-++..|. |.|.|.+.+.-+-|++.... .+..+ .+.+-
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge-~lvrf~d~e~RdlalkRhkh-h~g~r--yievY 134 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGE-ALVRFVDPEGRDLALKRHKH-HMGTR--YIEVY 134 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccc-eEEEecCchhhhhhhHhhhh-hccCC--ceeee
Confidence 34457889999999999999998743 222233333466675 99999999998888876322 22222 11211
Q ss_pred eeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCc
Q 013267 174 FSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDR 253 (446)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (446)
-+.. ..-..++...+.. ++.+.+...-
T Consensus 135 ka~g-e~f~~iagg~s~e----------------------------------------------------~~~flsk~~q 161 (508)
T KOG1365|consen 135 KATG-EEFLKIAGGTSNE----------------------------------------------------AAPFLSKENQ 161 (508)
T ss_pred ccCc-hhheEecCCcccc----------------------------------------------------CCCCCCcccc
Confidence 1100 0000000000000 0000000011
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhccc----CceEEEEEeeC--C--CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEE
Q 013267 254 CTVLVSNLNSDRIDEDKLFNLFSLY----GNIIRIKLLRN--K--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 325 (446)
Q Consensus 254 ~~l~v~nl~~~~~~~~~l~~~F~~~----G~v~~v~i~~~--~--~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~ 325 (446)
-.|.+.+|| +.+++.++.++|..- |..+.|.++.. . .|-|||.|..+++|+.|+.. |...++-|-|.+-.
T Consensus 162 vivRmRGLP-fdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLP-FDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCC-CCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 278899999 579999999999632 23445544442 1 78999999999999999983 43444444444433
Q ss_pred ecCCCCCC---CCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeE---EEEE-ee
Q 013267 326 SKHPNITQ---GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN---TKLF-EM 398 (446)
Q Consensus 326 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~---~~i~-~~ 398 (446)
++...... ........+.....-......+.-...++..+|.+++||...+.+||.++|..|-.-+. |... ..
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 33221100 00000000000000000000000011123569999999999999999999998864333 3332 22
Q ss_pred CC--ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 399 NG--KKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 399 ~~--~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
.+ .|.|||+|.+.++|.+|....|.+..++|-|.|-
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 22 6699999999999999999999988877777653
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=1.7e-12 Score=104.11 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=70.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
+.-|||+|||.+.||.||...|++||+|..+.+++++ ++||||+.|++..+..-|+..|||..|.||.|+|.+.-
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 5689999999999999999999999999999999774 38899999999999999999999999999999998753
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.18 E-value=7.7e-11 Score=84.05 Aligned_cols=65 Identities=28% Similarity=0.474 Sum_probs=59.4
Q ss_pred EcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 10 VRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 10 v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
|+|||..+++++|+++|++||.|..+.+.+++ ++|||+|.+.++|.+|++.+++. .++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~--~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGK--ELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCC--eeCCcEEEeC
Confidence 68999999999999999999999999998763 69999999999999999999977 7899998773
No 105
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.17 E-value=3.4e-11 Score=98.80 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=72.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
-..|.|-||-..++.++|+.+|++||.|-+|.|..+. .+|||||.|.+..+|+.|++.|.|.+|+|+.|.|++|+-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 3589999999999999999999999999999998553 389999999999999999999999999999999999986
Q ss_pred ccc
Q 013267 439 QSI 441 (446)
Q Consensus 439 ~~~ 441 (446)
...
T Consensus 93 gr~ 95 (256)
T KOG4207|consen 93 GRP 95 (256)
T ss_pred CCC
Confidence 543
No 106
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=7.9e-11 Score=89.80 Aligned_cols=83 Identities=24% Similarity=0.380 Sum_probs=72.8
Q ss_pred CCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcE
Q 013267 246 GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKR 320 (446)
Q Consensus 246 ~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~ 320 (446)
++..+-....|||+++.+ ..++++|.+.|..||.|..+.+..+. +|||+|+|++.++|+.|+..+||..+.|..
T Consensus 65 gPqrSVEGwIi~VtgvHe-EatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHE-EATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred CCccceeeEEEEEeccCc-chhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 333344456999999996 59999999999999999999987765 889999999999999999999999999999
Q ss_pred EEEEEecCC
Q 013267 321 LEVNFSKHP 329 (446)
Q Consensus 321 l~v~~~~~~ 329 (446)
|.|.|+-..
T Consensus 144 v~VDw~Fv~ 152 (170)
T KOG0130|consen 144 VSVDWCFVK 152 (170)
T ss_pred eeEEEEEec
Confidence 999997644
No 107
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=6.4e-11 Score=99.60 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=63.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
..|||++|+.++..++|+++|++||+|++.+|+.++ +||||||.|++.++|.+|++--| -.|+||+-.+-+|-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 589999999999999999999999999999998654 48999999999999999996655 46889887776543
No 108
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=2.3e-11 Score=120.12 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=137.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
.+.+|+++||+. .+++.+|+..|..+|.|..|.|-..+ .-++||.|.+...+..|+..+.+..|....+++.+..
T Consensus 371 atrTLf~Gnl~~-kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDS-KLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCccc-chhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 457999999997 79999999999999999999886654 3389999999999999999999999877777777764
Q ss_pred CCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEE
Q 013267 328 HPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVL 407 (446)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~ 407 (446)
.. ..+.+.+|+++|+.+.....|.+.|++||.|..+.+- ++..|++|.
T Consensus 450 ~k------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~--hgq~yayi~ 497 (975)
T KOG0112|consen 450 PK------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR--HGQPYAYIQ 497 (975)
T ss_pred cc------------------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc--cCCcceeee
Confidence 32 1346799999999999999999999999999998873 567799999
Q ss_pred eCCHHHHHHHHHHhCCCccCC--CeEEEEeecCcccc
Q 013267 408 FETEEQATEALVCKHASSLGG--SIIRISFSQLQSIR 442 (446)
Q Consensus 408 f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~~~~ 442 (446)
|.+...|+.|++.|.|+.|+| ++|+|.|+.+....
T Consensus 498 yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 498 YESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred cccCccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 999999999999999999994 89999999876543
No 109
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.14 E-value=7.3e-11 Score=96.85 Aligned_cols=76 Identities=29% Similarity=0.428 Sum_probs=69.6
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
...|.|-||. +.++.++|+.+|++||.|-+|.|..+. +|||||.|.+..||+.|++.|+|..+.|+.|.|.+++
T Consensus 13 m~SLkVdNLT-yRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLT-YRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEeccee-ccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4589999999 689999999999999999999998876 8999999999999999999999999999999888655
Q ss_pred CC
Q 013267 328 HP 329 (446)
Q Consensus 328 ~~ 329 (446)
=.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 33
No 110
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1e-10 Score=103.61 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=75.6
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 359 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
..||.++|||--|.+-++.+||.-+|++||.|.+|.|+++.. ..||||+|++.+++++|.=.|.+..|+.++|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 346889999999999999999999999999999999997744 4499999999999999999999999999999999
Q ss_pred eecCccc
Q 013267 435 FSQLQSI 441 (446)
Q Consensus 435 ~a~~~~~ 441 (446)
||++=+.
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9987553
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.12 E-value=1.1e-10 Score=113.45 Aligned_cols=75 Identities=24% Similarity=0.458 Sum_probs=71.9
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
-||+|||++||+.++|.||.++|++||.|.+|.++..++||||.+.+..+|.+|+..|++. .+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~--kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNV--KVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcc--cccceeeEEeeecc
Confidence 4899999999999999999999999999999999999999999999999999999999988 89999999999754
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=2.9e-10 Score=80.79 Aligned_cols=58 Identities=16% Similarity=0.337 Sum_probs=50.0
Q ss_pred HHHHHHHhh----ccCCeeEEE-E-Eee-----CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 377 EEEIVSHLE----EHGSIVNTK-L-FEM-----NGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 377 ~~~l~~~F~----~~G~v~~~~-i-~~~-----~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
+++|+++|+ .||.|.++. + ++. ..+|+|||+|.+.++|.+|++.|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 4 332 248999999999999999999999999999999874
No 113
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1.7e-11 Score=98.42 Aligned_cols=76 Identities=26% Similarity=0.464 Sum_probs=69.6
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
+.-|||+||| +.+|+.+|.-+|++||.|..|.+++|+ +||||++|++..+...|+..|||..+.||.|+|....
T Consensus 35 sA~Iyiggl~-~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGLP-YELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCCc-ccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 3489999999 579999999999999999999999987 8899999999999999999999999999999998644
Q ss_pred CC
Q 013267 328 HP 329 (446)
Q Consensus 328 ~~ 329 (446)
..
T Consensus 114 ~Y 115 (219)
T KOG0126|consen 114 NY 115 (219)
T ss_pred cc
Confidence 33
No 114
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.09 E-value=2.1e-10 Score=108.72 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=72.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
+.|||+|+|+++++++|.++|+..|.|.++++..|. .+||||++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 799999999999999999999999999999998553 2889999999999999999999999999999999999765
Q ss_pred cc
Q 013267 440 SI 441 (446)
Q Consensus 440 ~~ 441 (446)
--
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 115
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=4.7e-10 Score=99.53 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=71.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
+.+++|||++|-..++|.||+++|.+||+|..+.++..+++|||+|.+.++|+.|....-+ .+.++|++|.|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFN-KLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcc-eeeecceEEEEEeCCC
Confidence 3568999999988999999999999999999999999999999999999999999988666 4589999999999877
No 116
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.05 E-value=4.2e-10 Score=106.76 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=71.8
Q ss_pred CCCc-eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 2 TEPS-KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 2 ~~~s-~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
.++. +.|||||||++++|++|.++|++.|.|.+++++-|+ ||||++|.+.++|.+|++.||+. .+.|++|+
T Consensus 14 ~~~~~~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~--~~~gr~l~ 91 (435)
T KOG0108|consen 14 SPGLSSSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGA--EFNGRKLR 91 (435)
T ss_pred CcccccceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCc--ccCCceEE
Confidence 3444 899999999999999999999999999999999774 99999999999999999999999 99999999
Q ss_pred EEecccc
Q 013267 75 VQFSSHQ 81 (446)
Q Consensus 75 v~~~~~~ 81 (446)
|.|+...
T Consensus 92 v~~~~~~ 98 (435)
T KOG0108|consen 92 VNYASNR 98 (435)
T ss_pred eeccccc
Confidence 9998544
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.00 E-value=1.1e-08 Score=98.67 Aligned_cols=186 Identities=11% Similarity=-0.022 Sum_probs=124.9
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEee-----CCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR-----NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~-----~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
.+.+-+.+.+ .+.+..+++.+|.-.- |.++.|.. ...|-++|+|..+.+++.|++ -|...+..|.+.+....
T Consensus 311 ~~y~~~~gm~-fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 311 KYYNNYKGME-FNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hheeeecccc-cccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 3677788888 5889999999986432 33333332 337899999999999999987 45566677888887655
Q ss_pred CCCCCCCCCcccccc-----------CCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeE-EEE
Q 013267 328 HPNITQGADTHEYMN-----------SNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN-TKL 395 (446)
Q Consensus 328 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~-~~i 395 (446)
...-+..+....+.. ....|..+....+.+-..+.+.+|||..||..+++.++.+.|..--.|++ +.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 443221111111000 01111112211222234456789999999999999999999998888877 444
Q ss_pred E---eeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCccc
Q 013267 396 F---EMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 441 (446)
Q Consensus 396 ~---~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 441 (446)
- .++-++-|||+|..++++.+|...-+-+.++.+.|+|.=+....+
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 3 223377999999999999999977777777788888876554443
No 118
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=3.3e-09 Score=92.26 Aligned_cols=81 Identities=27% Similarity=0.370 Sum_probs=74.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEE
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 324 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~ 324 (446)
..|-+||||.-|+ +.+++.+|+..|+.||.|+.|.|+.++ +|||||+|++..+...|.+..+|..|.|+.|.|.
T Consensus 98 gDPy~TLFv~RLn-ydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 98 GDPYKTLFVARLN-YDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CCccceeeeeecc-ccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3566799999999 579999999999999999999999985 8999999999999999999999999999999999
Q ss_pred EecCCCC
Q 013267 325 FSKHPNI 331 (446)
Q Consensus 325 ~~~~~~~ 331 (446)
+-+....
T Consensus 177 vERgRTv 183 (335)
T KOG0113|consen 177 VERGRTV 183 (335)
T ss_pred ecccccc
Confidence 8776654
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.6e-08 Score=94.77 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=109.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEee--------CCCC---eEEEEeCCHHHHHHHHHHhcCCeeCC
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR--------NKPD---HALVQMGDGFQAELAVHFLKGALLFG 318 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~--------~~~g---~afV~f~~~~~A~~A~~~lng~~~~g 318 (446)
..-++.|||++||+ .++|++|...|..||.+. |.... ..+| |+|+-|+++...+.-+..+.- +.
T Consensus 256 ~~~S~KVFvGGlp~-dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~ 330 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPW-DITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GE 330 (520)
T ss_pred cccccceeecCCCc-cccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cc
Confidence 44568999999997 699999999999999773 43431 1166 999999999998887766643 33
Q ss_pred cEEEEEEecCCC--CCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhh-ccCCeeEEEE
Q 013267 319 KRLEVNFSKHPN--ITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLE-EHGSIVNTKL 395 (446)
Q Consensus 319 ~~l~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~v~~~~i 395 (446)
..+.+..+.+.. ...+..-+- -.+............|.++|||++||.-++.++|-.+|+ .||.|..+.|
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~-------laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGI 403 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWV-------LADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGI 403 (520)
T ss_pred cceEEEEecCcccccceeEEeeE-------eccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEe
Confidence 333332222221 111000000 000011111112445789999999999999999999998 8999999999
Q ss_pred EeeCC----ceEEEEEeCCHHHHHHHHHH
Q 013267 396 FEMNG----KKQALVLFETEEQATEALVC 420 (446)
Q Consensus 396 ~~~~~----~g~~fV~f~~~~~A~~A~~~ 420 (446)
-.+.. +|-|.|.|.+.++=.+||..
T Consensus 404 DtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 404 DTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 65432 89999999999999999853
No 120
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.98 E-value=1.2e-09 Score=106.54 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=74.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcccc
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 442 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 442 (446)
+++|||++|+..++|.||.++|++||.|.+++++. .+++|||.+...++|.+|+..|++..+.++.|++.|+--..+|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 68999999999999999999999999999999973 5999999999999999999999999999999999999888776
Q ss_pred c
Q 013267 443 E 443 (446)
Q Consensus 443 ~ 443 (446)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 5
No 121
>smart00361 RRM_1 RNA recognition motif.
Probab=98.94 E-value=3.6e-09 Score=75.12 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=49.2
Q ss_pred HHHHHHHhc----ccCceEEEE-EeeC-------CCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEE
Q 013267 268 EDKLFNLFS----LYGNIIRIK-LLRN-------KPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 324 (446)
Q Consensus 268 ~~~l~~~F~----~~G~v~~v~-i~~~-------~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~ 324 (446)
+++|+++|+ .||.|.++. +..+ .+|+|||+|.+.++|..|+..|||..+.|+.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999985 4332 27899999999999999999999999999998763
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=3.8e-09 Score=93.85 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=67.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHH-hCCCccCCCeEEEEeecC
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVC-KHASSLGGSIIRISFSQL 438 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~-l~~~~~~g~~l~v~~a~~ 438 (446)
..++|||++|-+.++|.+|++.|.+||+|+++.+.. ++++|||+|.+.++|+.|... +|.-.|+|.+|+|.|+++
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 357999999999999999999999999999999984 578999999999999998855 555567899999999999
No 123
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=3.5e-10 Score=93.80 Aligned_cols=134 Identities=21% Similarity=0.225 Sum_probs=110.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC----CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK----NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~----~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
++..|+|||+|+...+||+-|.++|-+.|+|..|.|.+++ .||||.|.++-+..-|++.+|+. .+.+.++++.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~--~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGD--DLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccc--hhccchhhccc
Confidence 5677999999999999999999999999999999998764 68999999999999999999998 78898888875
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEcC----CCCCcCHHHHHHhhcCCCceeEEEEEe----cCCceEEEEEecChh
Q 013267 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHH----MLYPITVEVLHQVFSPHGFVEKIVTFQ----KSAGFQALIQYQLRP 149 (446)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n----l~~~~t~~~l~~~f~~~G~i~~i~~~~----~~~g~~afv~f~~~~ 149 (446)
+-++ |...++++.++..|+.-|+++.+.+-. +++.+ .|+.+...-
T Consensus 84 --------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~-~~~~~qr~~ 136 (267)
T KOG4454|consen 84 --------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNF-GFVTYQRLC 136 (267)
T ss_pred --------------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCc-cchhhhhhh
Confidence 2222 557788899999999999999766542 45556 788877777
Q ss_pred hHHHHHHHhCCCCCC
Q 013267 150 SAVVARSSLQGRNIY 164 (446)
Q Consensus 150 ~A~~a~~~l~~~~~~ 164 (446)
..-.++....+....
T Consensus 137 ~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 137 AVPFALDLYQGLELF 151 (267)
T ss_pred cCcHHhhhhcccCcC
Confidence 777777766665543
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.87 E-value=8.7e-09 Score=85.21 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=70.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhcc-CCeeEEEEEee----CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEH-GSIVNTKLFEM----NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~-G~v~~~~i~~~----~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
.....+++..+|..+.+.++..+|.+| |.|..+++.++ +++|||||+|++++-|+-|-+.||++-+.|+.|.+.|
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 456789999999999999999999999 67777777555 4589999999999999999999999999999999999
Q ss_pred ecCc
Q 013267 436 SQLQ 439 (446)
Q Consensus 436 a~~~ 439 (446)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8876
No 125
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=2.5e-09 Score=106.07 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=129.6
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
.+++||++||+..+++.+|+..|..+|.|.+|.|..- ..||||.|.+...|.+|.-.+.+. .|..-.+++-+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~--~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGP--LIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCC--ccccCccccccc
Confidence 5789999999999999999999999999999888654 267999999999999999888776 344435555543
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhhHHHHHHHh
Q 013267 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSL 158 (446)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l 158 (446)
.. ..+...++++++|..+.....|...|..||+|..|.+ +...-| |||+|.+...|+.|++.|
T Consensus 449 ~~---------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~y-ayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 449 QP---------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPY-AYIQYESPPAAQAATHDM 511 (975)
T ss_pred cc---------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcc-eeeecccCccchhhHHHH
Confidence 22 1244556899999999999999999999999998765 333457 999999999999999999
Q ss_pred CCCCCCCCCceEEEeeeCCC
Q 013267 159 QGRNIYDGCCQLDIQFSNLD 178 (446)
Q Consensus 159 ~~~~~~~~~~~l~v~~~~~~ 178 (446)
.|..+.+....+++.++..-
T Consensus 512 rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 512 RGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred hcCcCCCCCcccccccccCC
Confidence 99999888778888888754
No 126
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=3.1e-09 Score=100.35 Aligned_cols=178 Identities=21% Similarity=0.176 Sum_probs=122.2
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCC
Q 013267 251 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 330 (446)
Q Consensus 251 ~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~ 330 (446)
.+..+|+|.|||. .+++++|.++|+.||+|+.|+.-..+.+.+||+|-|+.+|.+|++.||+.++.|+.++...+....
T Consensus 73 ~~~~~L~v~nl~~-~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~ 151 (549)
T KOG4660|consen 73 MNQGTLVVFNLPR-SVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRA 151 (549)
T ss_pred CccceEEEEecCC-cCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccccc
Confidence 3456999999996 799999999999999999988888889999999999999999999999999999998821111110
Q ss_pred CCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCC
Q 013267 331 ITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET 410 (446)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~ 410 (446)
..... ...| ...+..+...+. ..+-+...+++. |++..+..-++..|..+|.+.. ...... +-.-+++|.+
T Consensus 152 ~~~~~-~~~~----~~~~~~p~a~s~-pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~-~hq~~~~~~~ 222 (549)
T KOG4660|consen 152 MGLQS-GTSF----LNHFGSPLANSP-PGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLL-NHQRFVEFAD 222 (549)
T ss_pred chhcc-cchh----hhhccchhhcCC-CCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccch-hhhhhhhhcc
Confidence 00000 0011 011111111110 001112234443 8888888888888888998876 443221 2277889999
Q ss_pred HHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 411 EEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 411 ~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
..++..+...+ |+.+.|..-..+|+.+-
T Consensus 223 ~~s~a~~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 223 NRSYAFSEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred ccchhhcccCC-ceecCCCCceEEecCCC
Confidence 99997777644 77777888888887663
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.6e-07 Score=88.34 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=103.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEE---------ccCC---eEEEEecChhHHHHHHHhhccCCceecC
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVML---------RAKN---QALLQMQDVPSAINALQFYTNVQPTIRG 70 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~---------~~~~---~afV~F~~~~~A~~A~~~~~~~~~~~~g 70 (446)
.=|+.|||++||++++|+.|...|..||.+. |..- ..+| |+|+-|+++.+.+.-+.+|... .
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~-----~ 330 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG-----E 330 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc-----c
Confidence 3478999999999999999999999999863 2222 1135 9999999999999999887542 2
Q ss_pred eEeEEEeccc--cccccc-cc--CCCC-----CCCCCCcEEEEEEcCCCCCcCHHHHHHhhc-CCCceeEEEEE-----e
Q 013267 71 RNVYVQFSSH--QELTTM-EQ--NAQG-----RGDEPNRILLVTIHHMLYPITVEVLHQVFS-PHGFVEKIVTF-----Q 134 (446)
Q Consensus 71 ~~i~v~~~~~--~~~~~~-~~--~~~~-----~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~-~~G~i~~i~~~-----~ 134 (446)
....+..+.+ +..... .+ -... ....-....+|||++||..++.++|..++. -||-|.-+-|. +
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 2222222111 111000 00 0000 011122334599999999999999999999 79999877664 3
Q ss_pred cCCceEEEEEecChhhHHHHHHH
Q 013267 135 KSAGFQALIQYQLRPSAVVARSS 157 (446)
Q Consensus 135 ~~~g~~afv~f~~~~~A~~a~~~ 157 (446)
-.+|- |-|.|.+.+.-.+|++.
T Consensus 411 YPkGa-GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 411 YPKGA-GRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCc-ceeeecccHHHHHHHhh
Confidence 56785 89999999999999976
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=3.9e-10 Score=111.17 Aligned_cols=318 Identities=17% Similarity=0.161 Sum_probs=199.4
Q ss_pred EEcCCCCCCCHHHHH-Hhc------cCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 9 HVRNVGHEISENDLL-QLF------QPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 9 ~v~~lp~~~te~~l~-~~f------~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
.|=|-+...+...|+ ..+ ..||...+++- ....||+.-.+.++|..++..+... .-..-++.+--+.+.
T Consensus 483 ~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~--~~R~ay~~~~~~~~~~ev~~~~~r~--Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 483 EIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARK--VLRKAYSQVVDPEDALEVLEFFRRF--EREYGTLESFDLCPE 558 (881)
T ss_pred HhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHH--HHHHHHhcCcCchhHHHHHHHHHHH--HhccccHHHHhhhHH
Confidence 344445555566666 222 23344433333 2346899999999998888877654 211112111111110
Q ss_pred cccccccCCCCCCCCCCcEEEEEEcCCCCCcCHH-HHHHhhcCCCceeEEEEEe----cCCceEEEEEecChhhHHHHHH
Q 013267 82 ELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVE-VLHQVFSPHGFVEKIVTFQ----KSAGFQALIQYQLRPSAVVARS 156 (446)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~-~l~~~f~~~G~i~~i~~~~----~~~g~~afv~f~~~~~A~~a~~ 156 (446)
.-.. ... . ..-...-..+.++.+..... ..+..|..+|.+++|..-. ...+-++++.+.....++.|..
T Consensus 559 ~~~p-r~~-~----~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~ 632 (881)
T KOG0128|consen 559 KVLP-RVY-E----APLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV 632 (881)
T ss_pred hhcc-hhh-h----hhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc
Confidence 0000 000 0 00000113455555444444 5678899999999987653 1122126777888888887775
Q ss_pred HhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 013267 157 SLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIA 236 (446)
Q Consensus 157 ~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (446)
. .+..+.+++. .+..+..... .+ .+.
T Consensus 633 p-a~~~~a~~~~--av~~ad~~~~---------~~--~~k---------------------------------------- 658 (881)
T KOG0128|consen 633 P-AGGALANRSA--AVGLADAEEK---------EE--NFK---------------------------------------- 658 (881)
T ss_pred c-cccccCCccc--cCCCCCchhh---------hh--ccC----------------------------------------
Confidence 4 3333333311 1111110000 00 000
Q ss_pred hccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEee----C-CCCeEEEEeCCHHHHHHHHHHh
Q 013267 237 AAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR----N-KPDHALVQMGDGFQAELAVHFL 311 (446)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~----~-~~g~afV~f~~~~~A~~A~~~l 311 (446)
-.++......++|++||++ .+.+.+|...|..+|.+..+.+.. . -+|.||+.|...+.|.+|+...
T Consensus 659 --------vs~n~~R~~~~~fvsnl~~-~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 659 --------VSPNEIRDLIKIFVSNLSP-KMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred --------cCchHHHHHHHHHHhhcch-hhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 0000012234899999996 799999999999999887765541 1 2899999999999999999966
Q ss_pred cCCeeCCcEEEEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCee
Q 013267 312 KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV 391 (446)
Q Consensus 312 ng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~ 391 (446)
.++.++ + ..++|+|.|+..|.++++.+|+.+|.+.
T Consensus 730 d~~~~g---------K------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~ 764 (881)
T KOG0128|consen 730 DSCFFG---------K------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVT 764 (881)
T ss_pred hhhhhh---------h------------------------------------hhhheeCCCCCCchHHHHhhccccCCcc
Confidence 655443 1 3688999999999999999999999999
Q ss_pred EEEEEee---CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcccccc
Q 013267 392 NTKLFEM---NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIREN 444 (446)
Q Consensus 392 ~~~i~~~---~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~ 444 (446)
++.+... +-+|-++|.|.++.+|.+++.......+..+.+.|..+.|..-|++
T Consensus 765 ~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K~k 820 (881)
T KOG0128|consen 765 SLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDKKK 820 (881)
T ss_pred ccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcccccc
Confidence 9887633 3388999999999999999999999888888999998877555554
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.1e-08 Score=90.93 Aligned_cols=78 Identities=26% Similarity=0.412 Sum_probs=72.9
Q ss_pred CCCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 1 ~~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
|.||--+|||.-|.+-+|.+||.-+|+.||+|.+|.|++|+ -||||+|.+.++.++|.-.+.+. -|+.+.|+
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNv--LIDDrRIH 312 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNV--LIDDRRIH 312 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcce--eeccceEE
Confidence 57899999999999999999999999999999999999996 67999999999999999999988 89999999
Q ss_pred EEeccc
Q 013267 75 VQFSSH 80 (446)
Q Consensus 75 v~~~~~ 80 (446)
|.|+..
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 999754
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=5.1e-10 Score=110.41 Aligned_cols=225 Identities=18% Similarity=0.123 Sum_probs=168.2
Q ss_pred EEEcCCCCCCCH-HHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 8 IHVRNVGHEISE-NDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 8 l~v~~lp~~~te-~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
..+.++-+..-. +..+..|..+|.|+.+++-..+ +++++.++...+|+.|...-.+. +.++...+..+++
T Consensus 574 ~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~---~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 574 KESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGA---LANRSAAVGLADA 650 (881)
T ss_pred hcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccc---cCCccccCCCCCc
Confidence 344555444433 4678899999999998887632 57899999999999997755444 7787777777766
Q ss_pred ccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEE-----ecCCceEEEEEecChhhHHHHH
Q 013267 81 QELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVAR 155 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afv~f~~~~~A~~a~ 155 (446)
.+......- ..+.......+||.||+..+.+++|...|.++|.+..+.+. .+-+|+ ||+.|..+++|.+|+
T Consensus 651 ~~~~~~~kv---s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~-~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 651 EEKEENFKV---SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGK-AYVEFLKPEHAGAAV 726 (881)
T ss_pred hhhhhccCc---CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccc-eeeEeecCCchhhhh
Confidence 553222111 11111233457999999999999999999999999865543 356787 999999999999999
Q ss_pred HHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhh
Q 013267 156 SSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAI 235 (446)
Q Consensus 156 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (446)
....+ .+.++
T Consensus 727 ~f~d~-~~~gK--------------------------------------------------------------------- 736 (881)
T KOG0128|consen 727 AFRDS-CFFGK--------------------------------------------------------------------- 736 (881)
T ss_pred hhhhh-hhhhh---------------------------------------------------------------------
Confidence 76443 22221
Q ss_pred hhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHh
Q 013267 236 AAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFL 311 (446)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l 311 (446)
..++|.|.|+ ..|.++++.+++.+|.+.++.++... +|.|+|.|.+..+|.++....
T Consensus 737 ------------------~~v~i~g~pf-~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 737 ------------------ISVAISGPPF-QGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred ------------------hhhheeCCCC-CCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccc
Confidence 1689999995 79999999999999999998776643 889999999999999998878
Q ss_pred cCCeeCCcEEEEEEecC
Q 013267 312 KGALLFGKRLEVNFSKH 328 (446)
Q Consensus 312 ng~~~~g~~l~v~~~~~ 328 (446)
.+..+.-+.+.+..+.+
T Consensus 798 d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 798 DVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhhhcCccccccCC
Confidence 77766666666665444
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.68 E-value=7.4e-08 Score=90.93 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=73.5
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---C-ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 359 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---G-KKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~-~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
....+++|||.+|...+-..||+.+|+.||.|.-.+|..+. + ++||||.|.+.++|.++|+.||...|-|+-|.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 34467899999999999999999999999999999998552 2 8899999999999999999999999999999999
Q ss_pred eecCcc
Q 013267 435 FSQLQS 440 (446)
Q Consensus 435 ~a~~~~ 440 (446)
-+|...
T Consensus 481 kaKNEp 486 (940)
T KOG4661|consen 481 KAKNEP 486 (940)
T ss_pred ecccCc
Confidence 887643
No 132
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.68 E-value=1e-07 Score=81.23 Aligned_cols=158 Identities=14% Similarity=0.126 Sum_probs=117.2
Q ss_pred eEEEeCCCCCCCCHHH---HHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 255 TVLVSNLNSDRIDEDK---LFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~---l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
..+++++-+ .+..+- +...|+.+-.....+++.+. .+++|+.|.....-..+-..-+++.++-..+++.-+.
T Consensus 98 ~p~~~~~g~-~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGA-TVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccc-ccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 445555554 333332 37788888777776776654 6799999988888888887777888777776665443
Q ss_pred CCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceE
Q 013267 328 HPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQ 403 (446)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~ 403 (446)
.-.. +... ++....-.||-+.|-.+++++-|-+.|.+|-.....++++++ ++||
T Consensus 177 swed-------------------Psl~---ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgy 234 (290)
T KOG0226|consen 177 SWED-------------------PSLA---EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGY 234 (290)
T ss_pred ccCC-------------------cccc---cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccc
Confidence 3221 0000 122223588999999999999999999999999888888663 4889
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 404 ALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 404 ~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
+||.|.++.++..|++.|+|+.++.+.|++.=
T Consensus 235 gfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 235 GFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred eeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 99999999999999999999999999887643
No 133
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.61 E-value=1.1e-08 Score=92.27 Aligned_cols=181 Identities=17% Similarity=0.179 Sum_probs=123.9
Q ss_pred eEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC--------CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEe
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--------PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~ 326 (446)
+|.|.||.| .++.++++.+|...|.|..+.|+.+. ...|||.|.|...+..|.+ |.++.|-++.|.|-..
T Consensus 9 vIqvanisp-sat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANISP-SATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred eeeecccCc-hhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 899999998 79999999999999999999988743 3389999999999988877 8889999998887754
Q ss_pred cCCCCCCC------CCc--------cc--ccc-CCccc-cccc--ccccc--------cccCCCccEEEEeCCCCCCCHH
Q 013267 327 KHPNITQG------ADT--------HE--YMN-SNLNR-FNRN--AAKNY--------RYCCSPTKMIHLSTLPQDVTEE 378 (446)
Q Consensus 327 ~~~~~~~~------~~~--------~~--~~~-~~~~~-~~~~--~~~~~--------~~~~~~~~~l~v~nlp~~~t~~ 378 (446)
-...+... +.. .+ +.+ .++.. ...+ ..+.. ...-.-.+++++.+|+..|...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 43332110 000 00 000 00000 0000 00000 0000123689999999999999
Q ss_pred HHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 379 EIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 379 ~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
++.+.|..+|+|....+.......+|-++|...-+...|+ .++|..+.-....+.-.+|
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcCc
Confidence 9999999999999988875445668889999988888887 5666666533333333333
No 134
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.61 E-value=5.9e-08 Score=93.99 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee-------CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEE
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM-------NGKKQALVLFETEEQATEALVCKHASSLGGSIIRI 433 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-------~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 433 (446)
+..+++||+||++.+++..|...|.+||.|..++|+-. ..+.||||.|.+..+|++|++.|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 44679999999999999999999999999999999822 23669999999999999999999999999999999
Q ss_pred EeecCcc
Q 013267 434 SFSQLQS 440 (446)
Q Consensus 434 ~~a~~~~ 440 (446)
-|+|.=.
T Consensus 252 gWgk~V~ 258 (877)
T KOG0151|consen 252 GWGKAVP 258 (877)
T ss_pred ccccccc
Confidence 9996533
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.59 E-value=5.4e-07 Score=67.07 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=66.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcc--CCeeEEEEEee----CCceEEEEEeCCHHHHHHHHHHhCCCccC----CCeEEE
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEH--GSIVNTKLFEM----NGKKQALVLFETEEQATEALVCKHASSLG----GSIIRI 433 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~--G~v~~~~i~~~----~~~g~~fV~f~~~~~A~~A~~~l~~~~~~----g~~l~v 433 (446)
++|.|+|||..+|.++|.+++... |....+.++-+ -+.|||||.|.+++.|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999999765 55555555422 23889999999999999999999999887 689999
Q ss_pred EeecCcccc
Q 013267 434 SFSQLQSIR 442 (446)
Q Consensus 434 ~~a~~~~~~ 442 (446)
+||+-|...
T Consensus 82 ~yAriQG~~ 90 (97)
T PF04059_consen 82 SYARIQGKD 90 (97)
T ss_pred ehhHhhCHH
Confidence 999987654
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.51 E-value=2.1e-07 Score=87.94 Aligned_cols=79 Identities=27% Similarity=0.346 Sum_probs=71.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEE
Q 013267 251 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 325 (446)
Q Consensus 251 ~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~ 325 (446)
..++.|+|++|.. ++...+|+++|++||.|+-.+|+.+. ++|+||++.+..+|.++|..||...|+|+-|.|..
T Consensus 403 ~~gRNlWVSGLSs-tTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSS-TTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeecccc-chhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3457999999994 67788999999999999999998865 67999999999999999999999999999999998
Q ss_pred ecCCC
Q 013267 326 SKHPN 330 (446)
Q Consensus 326 ~~~~~ 330 (446)
+++..
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 77653
No 137
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.51 E-value=9.6e-08 Score=86.72 Aligned_cols=168 Identities=20% Similarity=0.221 Sum_probs=126.6
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEee--C---CCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR--N---KPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~--~---~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
.++++++++. +.+.+.+...++..+|......... + .++++++.|...+.+..|+...-.....++.+...+..
T Consensus 88 ~~~~f~g~~s-~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 88 SSTFFVGELS-ENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred cccccccccc-cchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 4589999999 5788888999999999666554333 1 18899999999999999999555456666655444433
Q ss_pred CCCCCCCCCccccccCCcccccccccccccccCCCccEEE-EeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ce
Q 013267 328 HPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIH-LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KK 402 (446)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g 402 (446)
.... . +..+.......++.+++ +++++..+++++|+..|..+|.|..+++..... +|
T Consensus 167 ~~~~--------~----------~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg 228 (285)
T KOG4210|consen 167 RRGL--------R----------PKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKG 228 (285)
T ss_pred cccc--------c----------ccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhh
Confidence 2210 0 00000011223445566 999999999999999999999999999985533 77
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 403 QALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 403 ~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
+|+|.|.....+..++.. .+..+.|+.+.+.+.++..
T Consensus 229 ~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 229 FAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 999999999999999988 8999999999999998764
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.49 E-value=5.1e-07 Score=78.88 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
+..|+|.|||..|+++||+++|..||.+..+-+-.+. ..|.|-|.|...++|.+|++.+||..++|+.+++..+.+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 3689999999999999999999999988887775443 2789999999999999999999999999999999887766
Q ss_pred cc
Q 013267 440 SI 441 (446)
Q Consensus 440 ~~ 441 (446)
..
T Consensus 163 ~~ 164 (243)
T KOG0533|consen 163 SQ 164 (243)
T ss_pred cc
Confidence 54
No 139
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.49 E-value=1.1e-08 Score=93.09 Aligned_cols=155 Identities=20% Similarity=0.245 Sum_probs=124.8
Q ss_pred eEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcC-CeeCCcEEEEEEecCCCCCC
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG-ALLFGKRLEVNFSKHPNITQ 333 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng-~~~~g~~l~v~~~~~~~~~~ 333 (446)
.+|++||.| ..+..+|..+|..----.+-.++. +.|++||.+.+..-|.+|++.++| ..+.|+++.+.++-++.
T Consensus 3 klyignL~p-~~~psdl~svfg~ak~~~~g~fl~-k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk--- 77 (584)
T KOG2193|consen 3 KLYIGNLSP-QVTPSDLESVFGDAKIPGSGQFLV-KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK--- 77 (584)
T ss_pred cccccccCC-CCChHHHHHHhccccCCCCcceee-ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH---
Confidence 699999997 799999999997652111112222 378999999999999999999999 56789999998877552
Q ss_pred CCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC-ceEEEEEeCCHH
Q 013267 334 GADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG-KKQALVLFETEE 412 (446)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~g~~fV~f~~~~ 412 (446)
.-++.+.|.|+|...-.+.|-.+...||.++.|....... .-..-|.|.+.+
T Consensus 78 ---------------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~ 130 (584)
T KOG2193|consen 78 ---------------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQ 130 (584)
T ss_pred ---------------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHH
Confidence 1235688999999999999999999999999997752211 225568899999
Q ss_pred HHHHHHHHhCCCccCCCeEEEEeecCccc
Q 013267 413 QATEALVCKHASSLGGSIIRISFSQLQSI 441 (446)
Q Consensus 413 ~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 441 (446)
.+..|+..++|.++.+..+++.|.-....
T Consensus 131 ~~~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 131 QHRQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHHHHHHhhcchHhhhhhhhcccCchhhh
Confidence 99999999999999999999999765543
No 140
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.48 E-value=5.9e-07 Score=74.58 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=66.5
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhccc-CceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEe
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLY-GNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~-G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~ 326 (446)
...+++..+| ..+.+.++..+|.+| |.|..+++-+++ +|||||+|++.+.|.-|-+.||+..|.++.|.+.+-
T Consensus 49 ~g~~~~~~~p-~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIP-HGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccc-cchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 3489999999 479999999999999 566777775544 889999999999999999999999999999999987
Q ss_pred cCC
Q 013267 327 KHP 329 (446)
Q Consensus 327 ~~~ 329 (446)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 765
No 141
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.44 E-value=1.7e-06 Score=60.94 Aligned_cols=69 Identities=20% Similarity=0.307 Sum_probs=48.6
Q ss_pred cEEEEeCCCCCCCH----HHHHHHhhccC-CeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 364 KMIHLSTLPQDVTE----EEIVSHLEEHG-SIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 364 ~~l~v~nlp~~~t~----~~l~~~F~~~G-~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
..|+|.|||.+.+. ..|++++..+| .|.++ ..+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 37999999998775 56677778886 44333 267999999999999999999999999999999999854
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=8.3e-08 Score=79.92 Aligned_cols=133 Identities=21% Similarity=0.218 Sum_probs=106.0
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC---CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK---PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
..||||.|+.. .++++-|.++|-+-|+|.+|.|..++ ..||||.|.++.....|++.+||..+.++.+++.+-...
T Consensus 9 drtl~v~n~~~-~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 9 DRTLLVQNMYS-GVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhHHHHHhhhh-hhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 34999999995 79999999999999999999998765 339999999999999999999999999998888864322
Q ss_pred CCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEE
Q 013267 330 NITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALV 406 (446)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV 406 (446)
+. . -|...++++.+...|+.-|.++.+++..++ ++.++|+
T Consensus 88 sh--------------------a-----------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~ 130 (267)
T KOG4454|consen 88 SH--------------------A-----------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFV 130 (267)
T ss_pred Cc--------------------c-----------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccch
Confidence 10 0 144567888888889999999888887443 3668888
Q ss_pred EeCCHHHHHHHHHHhCC
Q 013267 407 LFETEEQATEALVCKHA 423 (446)
Q Consensus 407 ~f~~~~~A~~A~~~l~~ 423 (446)
.+-...+.-.|+..-.+
T Consensus 131 ~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 131 TYQRLCAVPFALDLYQG 147 (267)
T ss_pred hhhhhhcCcHHhhhhcc
Confidence 88777776666655544
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.41 E-value=6.7e-07 Score=86.90 Aligned_cols=81 Identities=22% Similarity=0.411 Sum_probs=73.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC--------CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEE
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--------PDHALVQMGDGFQAELAVHFLKGALLFGKRL 321 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~~~lng~~~~g~~l 321 (446)
.+.++.||++||+| .++++.|...|..||+|..++|+-.. +.|+||-|-+..||.+|+..|+|..+.+..+
T Consensus 171 DP~TTNlyv~Nlnp-sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNP-SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCc-cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 45667999999998 79999999999999999999987643 5699999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 013267 322 EVNFSKHPNI 331 (446)
Q Consensus 322 ~v~~~~~~~~ 331 (446)
++.|++.-.+
T Consensus 250 K~gWgk~V~i 259 (877)
T KOG0151|consen 250 KLGWGKAVPI 259 (877)
T ss_pred eecccccccc
Confidence 9999976554
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.41 E-value=3.9e-07 Score=86.25 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=61.3
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEc----cC--CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR----AK--NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~----~~--~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
..|||+|||.++++++|.+.|+.||.|+...|.. ++ .||||+|.+.++++.|+.+. ++.++|+++.|+--
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRKLNVEEK 364 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccCCeeEEEEec
Confidence 4499999999999999999999999999766654 22 78999999999999999876 66899999999953
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.29 E-value=1.2e-06 Score=82.98 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=65.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
....|||+|||.++++++|++.|..||.|+...|...+ ..+||||+|.+.++++.|++.- -..++|++|.|.--+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 34459999999999999999999999999998887432 2479999999999999999666 777889999998665
Q ss_pred C
Q 013267 438 L 438 (446)
Q Consensus 438 ~ 438 (446)
+
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 5
No 146
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.26 E-value=4e-06 Score=73.34 Aligned_cols=78 Identities=26% Similarity=0.329 Sum_probs=69.7
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecC
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 328 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~ 328 (446)
.+.|+|.||| +.+.+++|+++|..||.+..+-+-.+. .|+|-|.|...+||..|++.+||..+.|+.|++....+
T Consensus 83 ~~~v~v~NL~-~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLP-YGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCC-cCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3589999999 589999999999999988888776665 67999999999999999999999999999999998766
Q ss_pred CCC
Q 013267 329 PNI 331 (446)
Q Consensus 329 ~~~ 331 (446)
...
T Consensus 162 ~~~ 164 (243)
T KOG0533|consen 162 PSQ 164 (243)
T ss_pred ccc
Confidence 654
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.25 E-value=2.9e-06 Score=59.84 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=47.3
Q ss_pred eEEEEcCCCCCCCHHHHHHhc----cCc-cceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 6 KVIHVRNVGHEISENDLLQLF----QPF-GVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f----~~~-G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
..|+|.|||.+.+-..|+.-+ ..+ |.|.+| ..+.|.|.|.+.+.|.+|.+++++. .+.|+.|.|+|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegE--dVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGE--DVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT----SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhccc--ccccceEEEEEcCC
Confidence 579999999999987666544 466 556655 2678999999999999999999998 89999999999754
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.23 E-value=2.9e-06 Score=64.83 Aligned_cols=71 Identities=18% Similarity=0.399 Sum_probs=48.1
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccC---CceecCeEeEEEe
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV---QPTIRGRNVYVQF 77 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~---~~~~~g~~i~v~~ 77 (446)
+|+|.+++.+++-++|.+.|+.||.|.-|.+.++...|||.|.+.++|++|+..+... .+.+.+..+.++.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 6889999999999999999999999999999998889999999999999999987765 5566666665553
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.21 E-value=2.4e-06 Score=74.97 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=69.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
..+.+||+|+...+|.+++...|+.||.|..+.+..++ .+||+||+|.+.+.++.|+. |++..+.|+.+.|++.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 35799999999999999999999999999988887553 37899999999999999998 99999999999999987
Q ss_pred Cc
Q 013267 438 LQ 439 (446)
Q Consensus 438 ~~ 439 (446)
-.
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 65
No 150
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.13 E-value=1.2e-05 Score=59.96 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=54.0
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCc--ccee--EEEEEc----cCCeEEEEecChhHHHHHHHhhccCCce-e-cCeEeEE
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPF--GVIT--KLVMLR----AKNQALLQMQDVPSAINALQFYTNVQPT-I-RGRNVYV 75 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~--G~i~--~~~i~~----~~~~afV~F~~~~~A~~A~~~~~~~~~~-~-~g~~i~v 75 (446)
++|+|+|||..+|.++|.+++... |... -+.+.. ..|||||.|.+.++|.+..+.+++.... . ..+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988643 4332 122221 2499999999999999999999988321 1 2345566
Q ss_pred Eeccc
Q 013267 76 QFSSH 80 (446)
Q Consensus 76 ~~~~~ 80 (446)
.|+.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 66543
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.10 E-value=1.1e-05 Score=61.73 Aligned_cols=70 Identities=20% Similarity=0.342 Sum_probs=45.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCC-----ccCCCeEEEE
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHAS-----SLGGSIIRIS 434 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~-----~~~g~~l~v~ 434 (446)
++.|+|.+++..++.++|++.|++||.|..|.+. .+...|+|.|.+.++|++|+..+... .+.+..+.++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~--~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS--RGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE----TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEec--CCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 3689999999999999999999999999999886 35669999999999999999887765 4445555443
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.06 E-value=5.3e-06 Score=75.46 Aligned_cols=164 Identities=15% Similarity=0.185 Sum_probs=117.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEc------cCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR------AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~------~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
+.+.|++++...+.+.++..++...|....+.... .++++++.|...+.+..|+...... .+.++.+.....
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~--~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSK--VLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcc--ccccccccCccc
Confidence 57889999999999999999999998876665543 3588999999999999999976654 455555554443
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHHH
Q 013267 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAVV 153 (446)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~~ 153 (446)
........... ......... ...+|++++..+++++|+..|..+|.|..+.+.. ..+|| ||+.|.+..++..
T Consensus 166 ~~~~~~~~n~~-~~~~~~~s~-~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~-a~~~~~~~~~~~~ 242 (285)
T KOG4210|consen 166 TRRGLRPKNKL-SRLSSGPSD-TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGF-AYVDFSAGNSKKL 242 (285)
T ss_pred ccccccccchh-cccccCccc-cceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhh-hhhhhhhchhHHH
Confidence 32221110000 011111111 2235999999999999999999999999887753 67788 9999999999999
Q ss_pred HHHHhCCCCCCCCCceEEEeeeC
Q 013267 154 ARSSLQGRNIYDGCCQLDIQFSN 176 (446)
Q Consensus 154 a~~~l~~~~~~~~~~~l~v~~~~ 176 (446)
++.. ....+.+. ++.+.+..
T Consensus 243 ~~~~-~~~~~~~~--~~~~~~~~ 262 (285)
T KOG4210|consen 243 ALND-QTRSIGGR--PLRLEEDE 262 (285)
T ss_pred Hhhc-ccCcccCc--ccccccCC
Confidence 9987 66666665 55665544
No 153
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.05 E-value=4.1e-06 Score=75.96 Aligned_cols=189 Identities=12% Similarity=0.057 Sum_probs=108.4
Q ss_pred EEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe--------cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEe
Q 013267 102 LVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ--------KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQ 173 (446)
Q Consensus 102 ~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~--------~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~ 173 (446)
.|-|.||.+++|.++++.+|.-.|.|..+.++. ..... |||.|.+..++..|-+ |.+..+-++ ..+.+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRt-cyVkf~d~~sv~vaQh-Ltntvfvdr-aliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRT-CYVKFLDSQSVTVAQH-LTNTVFVDR-ALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeee-EEEeccCCcceeHHhh-hccceeeee-eEEEEe
Confidence 478999999999999999999999999988874 12234 9999999999988875 444444343 233333
Q ss_pred eeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhh-hhhh---hc-cCCCCCCCCc
Q 013267 174 FSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANA-AAIA---AA-FGGGLPPGIT 248 (446)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~~~~ 248 (446)
|...-..-. + .... +.... ..+++.++ .+.+++-... ..+. +. ....+|+...
T Consensus 86 ~~~~~~p~r-~----af~~----l~~~n----avprll~p---------dg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~ 143 (479)
T KOG4676|consen 86 YGDEVIPDR-F----AFVE----LADQN----AVPRLLPP---------DGVLPGDRPLTKINHSPNAILKTPELPPQAA 143 (479)
T ss_pred cCCCCCccH-H----HHHh----cCccc----ccccccCC---------CCccCCCCccccccCCccceecCCCCChHhh
Confidence 332110000 0 0000 00000 00000000 0001000000 0000 00 0011111111
Q ss_pred ---cCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-CCeEEEEeCCHHHHHHHHHHhcCCeeC
Q 013267 249 ---GTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-PDHALVQMGDGFQAELAVHFLKGALLF 317 (446)
Q Consensus 249 ---~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-~g~afV~f~~~~~A~~A~~~lng~~~~ 317 (446)
...-..|++|.+|+. .+..+++.+.|..+|.|....+-... ..+|-++|....+...|++ ++|..+.
T Consensus 144 A~kleeirRt~~v~sl~~-~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 144 AKKLEEIRRTREVQSLIS-AAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhHHHHhhhhhhcchh-hhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 011225899999995 69999999999999999877665433 5577799999999899988 6666654
No 154
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.05 E-value=4.1e-06 Score=71.73 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=103.0
Q ss_pred EEcCCCCCCCHHH-H--HHhccCccceeEEEEEccC-----CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 9 HVRNVGHEISEND-L--LQLFQPFGVITKLVMLRAK-----NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 9 ~v~~lp~~~te~~-l--~~~f~~~G~i~~~~i~~~~-----~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
+++++-..+..+- | ...|+.+-.+...++++++ +++|+.|.....-.++-..-++. +++-.+|++.- -
T Consensus 100 ~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~K--ki~~~~VR~a~--g 175 (290)
T KOG0226|consen 100 FQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKK--KIGKPPVRLAA--G 175 (290)
T ss_pred cccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccc--cccCcceeecc--c
Confidence 4444444443333 3 5666666666666666664 78999998777777765554444 45555544431 1
Q ss_pred ccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEE-----ecCCceEEEEEecChhhHHHHH
Q 013267 81 QELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTF-----QKSAGFQALIQYQLRPSAVVAR 155 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~-----~~~~g~~afv~f~~~~~A~~a~ 155 (446)
..+...... .-...-.+||.+.|--+++.+.|-..|.+|-......+. .+++|| +||-|.+..|+.+|+
T Consensus 176 tswedPsl~-----ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgy-gfVSf~~pad~~rAm 249 (290)
T KOG0226|consen 176 TSWEDPSLA-----EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGY-GFVSFRDPADYVRAM 249 (290)
T ss_pred cccCCcccc-----cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccc-eeeeecCHHHHHHHH
Confidence 111111110 112344679999999999999999999999766554444 388999 999999999999999
Q ss_pred HHhCCCCCCCCCceEEE
Q 013267 156 SSLQGRNIYDGCCQLDI 172 (446)
Q Consensus 156 ~~l~~~~~~~~~~~l~v 172 (446)
..|+|.....+.++|+-
T Consensus 250 rem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 250 REMNGKYVGSRPIKLRK 266 (290)
T ss_pred HhhcccccccchhHhhh
Confidence 99999988777555543
No 155
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.04 E-value=6.9e-06 Score=54.10 Aligned_cols=53 Identities=26% Similarity=0.388 Sum_probs=45.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHH
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINAL 58 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~ 58 (446)
++.|-|.|.|++..+ +++.+|..||+|.++.+-...+.+||.|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 467899999987664 55558899999999988877899999999999999985
No 156
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.87 E-value=2.4e-05 Score=68.82 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=65.6
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
..+.+||+++...+|.+++..+|+.||.|..+.+..+ +++|||+|.+.+.+.+|+. +++. .+.|+.+.+.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs--~i~~~~i~vt~ 176 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGS--EIPGPAIEVTL 176 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCc--ccccccceeee
Confidence 5688999999999999999999999999987777765 3799999999999999999 9988 89999999997
Q ss_pred cc
Q 013267 78 SS 79 (446)
Q Consensus 78 ~~ 79 (446)
-.
T Consensus 177 ~r 178 (231)
T KOG4209|consen 177 KR 178 (231)
T ss_pred ee
Confidence 43
No 157
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.80 E-value=2.3e-06 Score=78.28 Aligned_cols=152 Identities=16% Similarity=0.210 Sum_probs=117.2
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccccccc
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTM 86 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~~~ 86 (446)
.+|+++|.+.++..||...|...-.-.+-.++-..+||||.+.+..-|.+|+..+++.. .+.|+++.+.++-++....
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~-elqGkr~e~~~sv~kkqrs- 80 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKV-ELQGKRQEVEHSVPKKQRS- 80 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhh-hhcCceeeccchhhHHHHh-
Confidence 48999999999999999999654222233444456899999999999999999999873 7999999999876653321
Q ss_pred ccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-cCCceEEEEEecChhhHHHHHHHhCCCCCCC
Q 013267 87 EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-KSAGFQALIQYQLRPSAVVARSSLQGRNIYD 165 (446)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~ 165 (446)
..+-|.|+|+..-++.|..+...||.++.+.... .+.--+.-|+|.+.+.+..|++.++|..+.+
T Consensus 81 --------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en 146 (584)
T KOG2193|consen 81 --------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLEN 146 (584)
T ss_pred --------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhh
Confidence 1267899999999999999999999999765432 2221113478999999999999999988866
Q ss_pred CCceEEEeeeC
Q 013267 166 GCCQLDIQFSN 176 (446)
Q Consensus 166 ~~~~l~v~~~~ 176 (446)
. .+.+.|-.
T Consensus 147 ~--~~k~~YiP 155 (584)
T KOG2193|consen 147 Q--HLKVGYIP 155 (584)
T ss_pred h--hhhcccCc
Confidence 5 44555543
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.77 E-value=5.3e-05 Score=67.55 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCCcCHHHH------HHhhcCCCceeEEEEEecC------Cc-eEEEEEecChhhHHHHHHHhCCCCCCCC
Q 013267 100 ILLVTIHHMLYPITVEVL------HQVFSPHGFVEKIVTFQKS------AG-FQALIQYQLRPSAVVARSSLQGRNIYDG 166 (446)
Q Consensus 100 ~~~v~v~nl~~~~t~~~l------~~~f~~~G~i~~i~~~~~~------~g-~~afv~f~~~~~A~~a~~~l~~~~~~~~ 166 (446)
-+++||.+|++.+..|+. .++|.+||.|.+|.+.++. .+ +-.||+|.+.+||.+|++..+|..+.|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 356999999988877763 3899999999999987532 12 2259999999999999999999988887
Q ss_pred CceEEEeeeC
Q 013267 167 CCQLDIQFSN 176 (446)
Q Consensus 167 ~~~l~v~~~~ 176 (446)
.|+..|-.
T Consensus 194 --~lkatYGT 201 (480)
T COG5175 194 --VLKATYGT 201 (480)
T ss_pred --eEeeecCc
Confidence 56665543
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.74 E-value=8.8e-05 Score=48.85 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=44.4
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHH
Q 013267 254 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAV 308 (446)
Q Consensus 254 ~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~ 308 (446)
+.|.|.+.++ -..+.+...|..||.|.++.+... ....+|+|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~--~~~~~vl~~F~~fGeI~~~~~~~~-~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPP--DLAEEVLEHFASFGEIVDIYVPES-TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECc--hHHHHHHHHHHhcCCEEEEEcCCC-CcEEEEEECCHHHHHhhC
Confidence 4789999996 356778889999999999888633 789999999999999985
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.68 E-value=7.6e-05 Score=66.57 Aligned_cols=74 Identities=12% Similarity=0.316 Sum_probs=62.5
Q ss_pred eEEEEcCCCCCCCHHHH------HHhccCccceeEEEEEccC-------Ce--EEEEecChhHHHHHHHhhccCCceecC
Q 013267 6 KVIHVRNVGHEISENDL------LQLFQPFGVITKLVMLRAK-------NQ--ALLQMQDVPSAINALQFYTNVQPTIRG 70 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l------~~~f~~~G~i~~~~i~~~~-------~~--afV~F~~~~~A~~A~~~~~~~~~~~~g 70 (446)
-.+||-+||+.+-.+++ .++|.+||.|..|.|.+.. +. .||+|.+.|||.+||....+. .++|
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs--~~DG 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS--LLDG 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc--cccC
Confidence 46899999999877773 3889999999988887653 33 499999999999999999999 8999
Q ss_pred eEeEEEecccc
Q 013267 71 RNVYVQFSSHQ 81 (446)
Q Consensus 71 ~~i~v~~~~~~ 81 (446)
+-|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999986543
No 161
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.58 E-value=3.5e-05 Score=66.47 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=53.5
Q ss_pred HHHHHHhh-ccCCeeEEEEEeeCC---ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCccc
Q 013267 378 EEIVSHLE-EHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 441 (446)
Q Consensus 378 ~~l~~~F~-~~G~v~~~~i~~~~~---~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 441 (446)
+||...|+ +||.|++++|..+-+ .|-++|.|...++|++|++.||+.++.|++|+..|+.--..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence 44555555 899999998875433 88999999999999999999999999999999999865443
No 162
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.50 E-value=0.00027 Score=62.00 Aligned_cols=78 Identities=29% Similarity=0.461 Sum_probs=63.7
Q ss_pred CCccEEEEeCCCC--CCC---HHHHHHHhhccCCeeEEEEEeeCC-----ceEEEEEeCCHHHHHHHHHHhCCCccCCCe
Q 013267 361 SPTKMIHLSTLPQ--DVT---EEEIVSHLEEHGSIVNTKLFEMNG-----KKQALVLFETEEQATEALVCKHASSLGGSI 430 (446)
Q Consensus 361 ~~~~~l~v~nlp~--~~t---~~~l~~~F~~~G~v~~~~i~~~~~-----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~ 430 (446)
-|.++|.+.|+-- .++ ++++...|..||.|..|.|+...+ ---.||+|..+++|.+|+-.|||..|+|+.
T Consensus 279 ~ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 279 CPTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred cchHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 4566777777632 344 588999999999999999985433 226799999999999999999999999999
Q ss_pred EEEEeecC
Q 013267 431 IRISFSQL 438 (446)
Q Consensus 431 l~v~~a~~ 438 (446)
+..+|-..
T Consensus 359 v~A~Fyn~ 366 (378)
T KOG1996|consen 359 VSACFYNL 366 (378)
T ss_pred eeheeccH
Confidence 99999754
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.50 E-value=5.6e-05 Score=69.70 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=55.9
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-------------------CCeEEEEecChhHHHHHHHhhccC
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-------------------KNQALLQMQDVPSAINALQFYTNV 64 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-------------------~~~afV~F~~~~~A~~A~~~~~~~ 64 (446)
|||+|.+-|||.+-..+.|.++|..+|.|..|+|++- +-+|+|+|...+.|.+|...++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 7999999999999999999999999999999999865 145999999999999999988765
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.48 E-value=0.00038 Score=60.13 Aligned_cols=91 Identities=22% Similarity=0.310 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCeeCCcEEEEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHH
Q 013267 302 FQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV 381 (446)
Q Consensus 302 ~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 381 (446)
.-|..|-..|.+...-|+.+.|.|+... .|||.||+.-++-+.+.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~a-----------------------------------~l~V~nl~~~~sndll~ 49 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMHA-----------------------------------ELYVVNLMQGASNDLLE 49 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeeccc-----------------------------------eEEEEecchhhhhHHHH
Confidence 4577788889999999999999998843 79999999999999999
Q ss_pred HHhhccCCeeEEEEE-eeCC--ceEEEEEeCCHHHHHHHHHHhCCCccC
Q 013267 382 SHLEEHGSIVNTKLF-EMNG--KKQALVLFETEEQATEALVCKHASSLG 427 (446)
Q Consensus 382 ~~F~~~G~v~~~~i~-~~~~--~g~~fV~f~~~~~A~~A~~~l~~~~~~ 427 (446)
+-|++||.|+...++ ++.+ .+-++|.|...-.|.+|...++-.-+.
T Consensus 50 ~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 50 QAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred HhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccc
Confidence 999999999987666 3333 558999999999999999998554444
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.42 E-value=0.00084 Score=50.49 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=53.0
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEE------------EeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcE
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIK------------LLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 320 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~------------i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~ 320 (446)
.+-|.|.+.|+ .....+.+.|++||.|.... -.....+...|+|+++.+|.+|+. .||..|.|..
T Consensus 6 ~~wVtVFGfp~--~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPP--SASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---G--GGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEccCH--HHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 34799999996 47889999999999997764 122237799999999999999999 8999998864
Q ss_pred E-EEEEec
Q 013267 321 L-EVNFSK 327 (446)
Q Consensus 321 l-~v~~~~ 327 (446)
| -|.|.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 466654
No 166
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.28 E-value=0.00022 Score=68.55 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=67.9
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccC---CCeEEEE
Q 013267 359 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHG-SIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG---GSIIRIS 434 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~---g~~l~v~ 434 (446)
..+++++|||.||-...|.-+|+.++.+-| .|++. ||+ +-+..|||.|.+.++|.+-+..|||-.+. +++|.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmD-kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMD-KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHH-HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 446789999999999999999999999655 55555 763 35789999999999999999999998776 6899999
Q ss_pred eecCccc
Q 013267 435 FSQLQSI 441 (446)
Q Consensus 435 ~a~~~~~ 441 (446)
|.....+
T Consensus 518 f~~~del 524 (718)
T KOG2416|consen 518 FVRADEL 524 (718)
T ss_pred ecchhHH
Confidence 9875544
No 167
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.24 E-value=0.00028 Score=64.04 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=68.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeE--------EEEEee----CCceEEEEEeCCHHHHHHHHHHhCCCccCCCe
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVN--------TKLFEM----NGKKQALVLFETEEQATEALVCKHASSLGGSI 430 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--------~~i~~~----~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~ 430 (446)
..+|||-+||..+++.+|.++|.++|.|.. +.+..+ ..|+-|.|.|.+...|++|+.-++++.+-|..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 458999999999999999999999998854 334433 23889999999999999999999999999999
Q ss_pred EEEEeecCcc
Q 013267 431 IRISFSQLQS 440 (446)
Q Consensus 431 l~v~~a~~~~ 440 (446)
|+|++++.+.
T Consensus 146 ikvs~a~~r~ 155 (351)
T KOG1995|consen 146 IKVSLAERRT 155 (351)
T ss_pred chhhhhhhcc
Confidence 9999998765
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.23 E-value=0.0024 Score=51.06 Aligned_cols=72 Identities=26% Similarity=0.429 Sum_probs=53.1
Q ss_pred eEEEeCCCC---C-CCCHH----HHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEe
Q 013267 255 TVLVSNLNS---D-RIDED----KLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326 (446)
Q Consensus 255 ~l~v~nl~~---~-~~~~~----~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~ 326 (446)
||.|.-+.+ + ...++ +|.+.|..||.+.-+++.. +.-.|+|.+.+.|..|+. ++|..++|+.|+|+..
T Consensus 29 TVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 29 TVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK 104 (146)
T ss_dssp EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-
T ss_pred eEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC
Confidence 676666551 1 12232 7888999999998888774 489999999999999999 9999999999999987
Q ss_pred cCCC
Q 013267 327 KHPN 330 (446)
Q Consensus 327 ~~~~ 330 (446)
.+.-
T Consensus 105 tpdW 108 (146)
T PF08952_consen 105 TPDW 108 (146)
T ss_dssp ----
T ss_pred CccH
Confidence 7653
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.22 E-value=0.00021 Score=61.63 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=59.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----------------ceEEEEEeCCHHHHHHHHHHhCCCcc
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----------------KKQALVLFETEEQATEALVCKHASSL 426 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----------------~g~~fV~f~~~~~A~~A~~~l~~~~~ 426 (446)
.-+||+++||+.+...-|+++++.||.|-.|.+.+... -.-|-|+|.+...|.+....|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46999999999999999999999999999998874421 11578999999999999999999999
Q ss_pred CCCe
Q 013267 427 GGSI 430 (446)
Q Consensus 427 ~g~~ 430 (446)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9863
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.19 E-value=0.00026 Score=65.44 Aligned_cols=73 Identities=23% Similarity=0.254 Sum_probs=60.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee-----C------------CceEEEEEeCCHHHHHHHHHHhCC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM-----N------------GKKQALVLFETEEQATEALVCKHA 423 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-----~------------~~g~~fV~f~~~~~A~~A~~~l~~ 423 (446)
-++++|.+-|||.+-.-+-|+++|+.+|.|..|+|+.. . .+-+|+|+|...+.|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36899999999999888999999999999999999733 1 133899999999999999999988
Q ss_pred CccCCCeEEE
Q 013267 424 SSLGGSIIRI 433 (446)
Q Consensus 424 ~~~~g~~l~v 433 (446)
..-+-.-|+|
T Consensus 309 e~~wr~glkv 318 (484)
T KOG1855|consen 309 EQNWRMGLKV 318 (484)
T ss_pred hhhhhhcchh
Confidence 7655333333
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.00084 Score=64.33 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=58.8
Q ss_pred ccEEEEeCCCCCC------CHHHHHHHhhccCCeeEEEEEee---CCceEEEEEeCCHHHHHHHHHHhCCCccC-CCeEE
Q 013267 363 TKMIHLSTLPQDV------TEEEIVSHLEEHGSIVNTKLFEM---NGKKQALVLFETEEQATEALVCKHASSLG-GSIIR 432 (446)
Q Consensus 363 ~~~l~v~nlp~~~------t~~~l~~~F~~~G~v~~~~i~~~---~~~g~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~ 432 (446)
..+|.|-|+|.-- -..-|.++|+++|.+....++.+ +.+|+.|++|.+..+|..|++.|||+.|+ ++++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4689999998632 24567789999999988888733 23899999999999999999999999998 66666
Q ss_pred EE
Q 013267 433 IS 434 (446)
Q Consensus 433 v~ 434 (446)
|.
T Consensus 138 v~ 139 (698)
T KOG2314|consen 138 VR 139 (698)
T ss_pred ee
Confidence 54
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.17 E-value=0.0018 Score=51.67 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=53.4
Q ss_pred CCCCceEEEEcCCC-----CCCCH----HHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCe
Q 013267 1 MTEPSKVIHVRNVG-----HEISE----NDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGR 71 (446)
Q Consensus 1 ~~~~s~~l~v~~lp-----~~~te----~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~ 71 (446)
|.||.-+|.|.=+. ...-. .+|.+.|.+||.+.=+++..+ .-+|+|.+.++|.+|++ +++. .+.|+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--~mwVTF~dg~sALaals-~dg~--~v~g~ 97 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--TMWVTFRDGQSALAALS-LDGI--QVNGR 97 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--CEEEEESSCHHHHHHHH-GCCS--EETTE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--eEEEEECccHHHHHHHc-cCCc--EECCE
Confidence 56788888887776 22222 377788899999877777765 68999999999999998 6666 89999
Q ss_pred EeEEEecccc
Q 013267 72 NVYVQFSSHQ 81 (446)
Q Consensus 72 ~i~v~~~~~~ 81 (446)
.|.|....++
T Consensus 98 ~l~i~LKtpd 107 (146)
T PF08952_consen 98 TLKIRLKTPD 107 (146)
T ss_dssp EEEEEE----
T ss_pred EEEEEeCCcc
Confidence 9999975553
No 173
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.13 E-value=0.0031 Score=47.41 Aligned_cols=72 Identities=15% Similarity=0.304 Sum_probs=52.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEE-E----------EeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEE
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-L----------FEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIR 432 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~-i----------~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 432 (446)
.-|.|-+.|.. ....|.+.|++||.|.+.. . ....+.++..|.|.++.+|.+|| .-||..+.|..+-
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEEE
Confidence 46778888877 7788999999999997775 0 11135779999999999999999 7899999986554
Q ss_pred -EEeec
Q 013267 433 -ISFSQ 437 (446)
Q Consensus 433 -v~~a~ 437 (446)
|-+.+
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 66653
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.13 E-value=0.0013 Score=57.90 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=52.3
Q ss_pred HHHHHHHhcccCceEEEEEeeCC------CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 268 EDKLFNLFSLYGNIIRIKLLRNK------PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 268 ~~~l~~~F~~~G~v~~v~i~~~~------~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
++++++.+.+||.|..|.|+... .-..||+|..+++|.+|+-.|||..|+||.++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45789999999999999887653 2267999999999999999999999999999998754
No 175
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.02 E-value=0.0029 Score=44.89 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=42.2
Q ss_pred EEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhcc
Q 013267 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTN 63 (446)
Q Consensus 8 l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~ 63 (446)
||--..|++|-..||.++|++||.| .|..+.+. .|||.....+.|..+++.+..
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT-SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT-SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT-EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC-cEEEEeecHHHHHHHHHHhcc
Confidence 4444499999999999999999988 67777764 699999999999999998764
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.02 E-value=0.0004 Score=59.94 Aligned_cols=64 Identities=23% Similarity=0.295 Sum_probs=57.2
Q ss_pred eEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----------------CCeEEEEeCCHHHHHHHHHHhcCCeeC
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----------------PDHALVQMGDGFQAELAVHFLKGALLF 317 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----------------~g~afV~f~~~~~A~~A~~~lng~~~~ 317 (446)
+||+++||| .++...|+++++.||.|-+|.+-... ...|.|+|.+-..|.+....|||..|+
T Consensus 76 VvylS~IPp-~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 76 VVYLSNIPP-YMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred EEEeccCCC-ccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 999999999 59999999999999999999876532 126799999999999999999999999
Q ss_pred Cc
Q 013267 318 GK 319 (446)
Q Consensus 318 g~ 319 (446)
|+
T Consensus 155 gk 156 (278)
T KOG3152|consen 155 GK 156 (278)
T ss_pred CC
Confidence 86
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.00 E-value=0.00039 Score=60.22 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=53.1
Q ss_pred HHHHHhc-ccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCC
Q 013267 270 KLFNLFS-LYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI 331 (446)
Q Consensus 270 ~l~~~F~-~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~ 331 (446)
+|...++ +||.|+.++|..+. .|-+||.|...++|..|++.|||..+.|++|+..++.....
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence 4444555 99999998776654 78999999999999999999999999999999999887654
No 178
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.87 E-value=0.0011 Score=60.25 Aligned_cols=80 Identities=25% Similarity=0.363 Sum_probs=68.7
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEE--------EEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCee
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIR--------IKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALL 316 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~--------v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~ 316 (446)
.....+|||-+|| +.+++++|..+|.+.|.|.. |+|..++ |+-|.|.|++...|+.|+..+++..|
T Consensus 63 ~s~~~ti~v~g~~-d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCP-DSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccC-ccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3455699999999 58999999999999998753 4444443 88999999999999999999999999
Q ss_pred CCcEEEEEEecCCC
Q 013267 317 FGKRLEVNFSKHPN 330 (446)
Q Consensus 317 ~g~~l~v~~~~~~~ 330 (446)
.+..|+|.++....
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999999887665
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.78 E-value=0.00082 Score=64.78 Aligned_cols=81 Identities=25% Similarity=0.374 Sum_probs=68.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhcc-CccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCC-ceecCeEeEEEeccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQ-PFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQ-PTIRGRNVYVQFSSH 80 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~-~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~-~~~~g~~i~v~~~~~ 80 (446)
++|-+|+|.||=...|.-.|+.++. ..|.|++.+|-+-+-.|||.|.+.++|..-+.+||+.+ +.-+++.|.+.|...
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 4688999999999999999999997 67778888877778899999999999999999999983 225677888888765
Q ss_pred ccc
Q 013267 81 QEL 83 (446)
Q Consensus 81 ~~~ 83 (446)
+.+
T Consensus 522 del 524 (718)
T KOG2416|consen 522 DEL 524 (718)
T ss_pred hHH
Confidence 544
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.74 E-value=0.0086 Score=40.38 Aligned_cols=53 Identities=23% Similarity=0.299 Sum_probs=45.0
Q ss_pred eEEEeCCCCCCCCHHHHHHHhccc---CceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHh
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLY---GNIIRIKLLRNKPDHALVQMGDGFQAELAVHFL 311 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~---G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l 311 (446)
.|+|.+++ .++.++|+.+|..| ....+|.++.| ..|-|.|.+.+.|.+|+..|
T Consensus 7 avhirGvd--~lsT~dI~~y~~~y~~~~~~~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD--ELSTDDIKAYFSEYFDEEGPFRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC--CCCHHHHHHHHHHhcccCCCceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 79999998 49999999999999 13457877766 57899999999999999864
No 181
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0056 Score=58.92 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=57.8
Q ss_pred ceEEEeCCCCCCCCHH-------HHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCC-cEE
Q 013267 254 CTVLVSNLNSDRIDED-------KLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFG-KRL 321 (446)
Q Consensus 254 ~~l~v~nl~~~~~~~~-------~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g-~~l 321 (446)
+.|+|-|+|. +..+ -|..+|+++|.+..+.+..+. +|+.|++|.+..+|..|++.|||..|.- +++
T Consensus 59 ~vVvv~g~Pv--V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAPV--VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCCcc--cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 4899999993 4433 467799999999888887654 7899999999999999999999999954 577
Q ss_pred EEEE
Q 013267 322 EVNF 325 (446)
Q Consensus 322 ~v~~ 325 (446)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6664
No 182
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.68 E-value=0.0066 Score=40.91 Aligned_cols=53 Identities=21% Similarity=0.396 Sum_probs=45.1
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCc----cceeEEEEEccCCeEEEEecChhHHHHHHHhh
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPF----GVITKLVMLRAKNQALLQMQDVPSAINALQFY 61 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~----G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~ 61 (446)
..|+|+|+.. ++.+||..+|..| + ...|..+.|. .|=|-|.+.+.|.+||..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEG-PFRIEWIDDT-SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCC-CceEEEecCC-cEEEEECCHHHHHHHHHcC
Confidence 4699999965 9999999999988 4 5588899886 4789999999999999754
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.56 E-value=0.012 Score=41.94 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=43.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCC
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 423 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~ 423 (446)
.+.||. .|..|...||.++|+.||.| .|.++ +...|||...+.+.|..|++.+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 355665 99999999999999999988 46666 466899999999999999998863
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.47 E-value=0.017 Score=45.43 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=59.8
Q ss_pred cCCCccEEEEeCCCCCC----CHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 359 CCSPTKMIHLSTLPQDV----TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~----t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
..+|=.+|.|+=|...+ +...+....+.||.|.+|... |+-.|.|.|.+..+|=+|+..++. ...|..+..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 34566677776555444 345566677899999999997 788999999999999999999988 6678889888
Q ss_pred eec
Q 013267 435 FSQ 437 (446)
Q Consensus 435 ~a~ 437 (446)
|-+
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 865
No 185
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.39 E-value=0.013 Score=50.98 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=57.0
Q ss_pred eEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCee----CCcEEEEEEe
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALL----FGKRLEVNFS 326 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~----~g~~l~v~~~ 326 (446)
.|+|.||.+ .++.|.+.+.|+.||+|....+.-|. .+-++|+|...-.|..|.+.++-.-| .++..-|...
T Consensus 33 ~l~V~nl~~-~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 33 ELYVVNLMQ-GASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred eEEEEecch-hhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 799999997 69999999999999999775443333 55889999999999999998854333 3455555544
Q ss_pred cCCC
Q 013267 327 KHPN 330 (446)
Q Consensus 327 ~~~~ 330 (446)
....
T Consensus 112 eq~~ 115 (275)
T KOG0115|consen 112 EQPD 115 (275)
T ss_pred hccC
Confidence 4433
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.65 E-value=0.012 Score=49.66 Aligned_cols=60 Identities=8% Similarity=0.206 Sum_probs=42.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccC-ccceeEEEEEc----cC-------CeEEEEecChhHHHHHHHhhccC
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQP-FGVITKLVMLR----AK-------NQALLQMQDVPSAINALQFYTNV 64 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~-~G~i~~~~i~~----~~-------~~afV~F~~~~~A~~A~~~~~~~ 64 (446)
...|.||.||+++||+++.+.+++ ++.......+. +. .-|||.|.+.+++......+++.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~ 78 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGH 78 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Confidence 357999999999999999999988 66653333332 11 33999999999999999988775
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.61 E-value=0.06 Score=42.50 Aligned_cols=73 Identities=21% Similarity=0.369 Sum_probs=57.5
Q ss_pred CCCceEEEEcCCCCCCC-HHH---HHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 2 TEPSKVIHVRNVGHEIS-END---LLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~t-e~~---l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.+|=.+|.|+=|.+++. .+| +...++.||+|.+|..+. +-.|.|.|.+..+|=+|+++++.. .-|.-+++.|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-rqsavVvF~d~~SAC~Av~Af~s~---~pgtm~qCsW 158 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-RQSAVVVFKDITSACKAVSAFQSR---APGTMFQCSW 158 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-CceEEEEehhhHHHHHHHHhhcCC---CCCceEEeec
Confidence 45667888888777763 344 446668999999888775 457999999999999999999875 6677888887
Q ss_pred c
Q 013267 78 S 78 (446)
Q Consensus 78 ~ 78 (446)
.
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 4
No 188
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.60 E-value=0.031 Score=47.35 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=48.2
Q ss_pred CHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhC--CCccCCCeEEEEeecCccc
Q 013267 376 TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH--ASSLGGSIIRISFSQLQSI 441 (446)
Q Consensus 376 t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~--~~~~~g~~l~v~~a~~~~~ 441 (446)
..+.|+++|..|+.+....++ ++-+=..|.|.+.++|.+|...|+ +..+.|..+++.|++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L--~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL--KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE--TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEc--CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 468999999999999877776 456678999999999999999999 9999999999999976554
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.50 E-value=0.044 Score=52.93 Aligned_cols=67 Identities=13% Similarity=0.256 Sum_probs=55.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhc--cCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCC--ccCCCeEE
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEE--HGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHAS--SLGGSIIR 432 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~--~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~--~~~g~~l~ 432 (446)
.|.|.|+-||..+-+++++.+|+. +-.+++|.+.- ..-+||.|++..||+.|.+.|... .|.|+.|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~---N~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH---NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee---cCceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 477888999999999999999974 67899999863 336899999999999999888763 46676553
No 190
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.47 E-value=0.085 Score=47.07 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=57.7
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCc-EEEEEEecCCC
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGK-RLEVNFSKHPN 330 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~-~l~v~~~~~~~ 330 (446)
..=|.|.+++| -...-|..+|+++|.|.++.-- ..-++-+|.|.+.-+|++|+. .||..|+|. -|-|.....+.
T Consensus 197 D~WVTVfGFpp--g~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPP--GQVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCc--cchhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 34688899997 5677899999999999876444 336699999999999999999 899998876 34455544443
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.40 E-value=0.14 Score=39.37 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=54.3
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhcccC-ceEEEEEeeCCC---CeEEEEeCCHHHHHHHHHHhcCCeeCC---cEEEEEEe
Q 013267 254 CTVLVSNLNSDRIDEDKLFNLFSLYG-NIIRIKLLRNKP---DHALVQMGDGFQAELAVHFLKGALLFG---KRLEVNFS 326 (446)
Q Consensus 254 ~~l~v~nl~~~~~~~~~l~~~F~~~G-~v~~v~i~~~~~---g~afV~f~~~~~A~~A~~~lng~~~~g---~~l~v~~~ 326 (446)
+++.+--.|++.++.++|..+.+.+- .|..++++++.. -.+.++|.+.++|..=...+||+.|.. ...+|-|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 46666666666667777776666665 567888888763 388999999999999999999999865 34444443
No 192
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.40 E-value=0.055 Score=45.91 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=49.1
Q ss_pred CHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhc--cCCceecCeEeEEEecccc
Q 013267 18 SENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT--NVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 18 te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~--~~~~~~~g~~i~v~~~~~~ 81 (446)
..+.|+++|..++.+.....++.-+-..|.|.+.++|++|+..|+ +. .+.|..+++.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~--~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGT--SFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TS--EETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhccccc--ccCCCceEEEEcccc
Confidence 458899999999999999999998889999999999999999999 66 899999999998543
No 193
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.35 E-value=0.039 Score=52.26 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=63.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCC
Q 013267 251 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 330 (446)
Q Consensus 251 ~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~ 330 (446)
..++.|-+--.+..--+-.+|...|.+||.|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|.++.|+|.|-.+..
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 344566666666544566789999999999999987554 5689999999999988777 79999999999999988754
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.30 E-value=0.36 Score=37.13 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=51.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcc-CCeeEEEEEeeCC--ceEEEEEeCCHHHHHHHHHHhCCCccC---CCeEEEEeec
Q 013267 365 MIHLSTLPQDVTEEEIVSHLEEH-GSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLG---GSIIRISFSQ 437 (446)
Q Consensus 365 ~l~v~nlp~~~t~~~l~~~F~~~-G~v~~~~i~~~~~--~g~~fV~f~~~~~A~~A~~~l~~~~~~---g~~l~v~~a~ 437 (446)
.+.+...|..++.++|..+.+.+ ..|..++++++.. +-.++++|.+.++|....+..||+.+. ...-+|-|.+
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV~ 93 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFVK 93 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEEE
Confidence 44444444455566777666666 4667788886643 449999999999999999999999876 3455555544
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.28 E-value=0.025 Score=54.55 Aligned_cols=71 Identities=11% Similarity=0.201 Sum_probs=60.0
Q ss_pred eEEEEcCCCCCCCHHHHHHhccC--ccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 6 KVIHVRNVGHEISENDLLQLFQP--FGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~--~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.+|.||.||....+|++..+|+. +-++.+|..-..-+ =||+|++..||+.|.++|......|-|++|...+
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 56888999999999999999975 66777888765433 7999999999999999998876679999887665
No 196
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.18 E-value=0.012 Score=59.45 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=70.7
Q ss_pred EEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccccccccc
Q 013267 8 IHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTME 87 (446)
Q Consensus 8 l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~~~~ 87 (446)
..+.|.+...+-.-|..+|+.||.|.+.+.+++-+.|.|+|.+.+.|..|+.++++.....-|-|.+|.+++..++-.+.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ep~ 380 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYEPP 380 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccccCC
Confidence 34556677788889999999999999999999999999999999999999999999988899999999999877665544
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.64 E-value=0.012 Score=53.32 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=61.4
Q ss_pred cEEEEeCCCCCCCHHHHH---HHhhccCCeeEEEEEeeC----C---ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEE
Q 013267 364 KMIHLSTLPQDVTEEEIV---SHLEEHGSIVNTKLFEMN----G---KKQALVLFETEEQATEALVCKHASSLGGSIIRI 433 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~---~~F~~~G~v~~~~i~~~~----~---~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 433 (446)
+-+||.+|+..+..+++. +.|.+||.|.++....+. + -..++|.|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 467888898876554444 378999999998887533 1 237899999999999999999999999999998
Q ss_pred EeecCc
Q 013267 434 SFSQLQ 439 (446)
Q Consensus 434 ~~a~~~ 439 (446)
+|...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 887764
No 198
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.22 E-value=0.11 Score=47.20 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=59.7
Q ss_pred CCcEEEEEEcCCCCCcCHHHHHHhhcCCCc--eeEEEEE-----ecCCceEEEEEecChhhHHHHHHHhCCCCCCCCCce
Q 013267 97 PNRILLVTIHHMLYPITVEVLHQVFSPHGF--VEKIVTF-----QKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQ 169 (446)
Q Consensus 97 ~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~--i~~i~~~-----~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~ 169 (446)
..+..++||+||.|..|.++|-+....-|. +.++.++ ..++|| |+|-..+.....+.++.|....+.|. .+
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~-AL~~~~SdAa~Kq~MeiLP~k~iHGQ-~P 154 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGY-ALLVLNSDAAVKQTMEILPTKTIHGQ-SP 154 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccce-EEEEecchHHHHHHHHhcccceecCC-CC
Confidence 456678999999999999999888877664 3455555 378999 99999999999999999998888775 23
Q ss_pred EEEeee
Q 013267 170 LDIQFS 175 (446)
Q Consensus 170 l~v~~~ 175 (446)
..+.+.
T Consensus 155 ~V~~~N 160 (498)
T KOG4849|consen 155 TVLSYN 160 (498)
T ss_pred eeeccc
Confidence 334443
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.21 E-value=0.041 Score=55.85 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=62.5
Q ss_pred EeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccC--CCeEEEEeecCccccc
Q 013267 368 LSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG--GSIIRISFSQLQSIRE 443 (446)
Q Consensus 368 v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~a~~~~~~~ 443 (446)
+.|.+...+-.-|--+|+.||.|.+..-++ +-..|.|+|.+.+.|..|++.++|+.+- |-+.+|+||+.-.+=+
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr--~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLR--DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheecc--cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 344444667889999999999999887763 4779999999999999999999999876 8899999999876644
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.20 E-value=0.018 Score=52.35 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=61.3
Q ss_pred eEEEeCCCCCCCCHHHH--HHHhcccCceEEEEEeeCC--------CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEE
Q 013267 255 TVLVSNLNSDRIDEDKL--FNLFSLYGNIIRIKLLRNK--------PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 324 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l--~~~F~~~G~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~ 324 (446)
-+||-+|++.-..++.| .+.|.+||.|.+|.+..+. ..-++|+|...++|..|+...+|+.+.|+.+++.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 68888898643444444 4589999999998776643 2368999999999999999999999999999999
Q ss_pred EecCCC
Q 013267 325 FSKHPN 330 (446)
Q Consensus 325 ~~~~~~ 330 (446)
+...+.
T Consensus 159 ~gttky 164 (327)
T KOG2068|consen 159 LGTTKY 164 (327)
T ss_pred hCCCcc
Confidence 877664
No 201
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.10 E-value=0.098 Score=49.39 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=55.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccc-eeEEEEEccC----CeEEEEecChhHHHHHHHhhccCC
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGV-ITKLVMLRAK----NQALLQMQDVPSAINALQFYTNVQ 65 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~-i~~~~i~~~~----~~afV~F~~~~~A~~A~~~~~~~~ 65 (446)
.+++.|.|-.+|..+|-.||..|+..+-. |.++++++|+ -.+.|.|.+.++|....+.+||.+
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~ 139 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQ 139 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCc
Confidence 35899999999999999999999988844 8899999985 348899999999999999988873
No 202
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.84 E-value=2.9 Score=37.62 Aligned_cols=178 Identities=16% Similarity=0.229 Sum_probs=109.1
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC------------CCeEEEEeCCHHHHHH----HHHHhcC--C
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK------------PDHALVQMGDGFQAEL----AVHFLKG--A 314 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~------------~g~afV~f~~~~~A~~----A~~~lng--~ 314 (446)
++.|.+.|+.. .++-..+..-|.+||+|++|.++.+. .....+.|-+.+.|.. .++.|+. .
T Consensus 15 TRSLLfeNv~~-sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNN-SIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccc-cccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 45788999995 79999999999999999999998864 3478999999988755 3333433 4
Q ss_pred eeCCcEEEEEEecCCCCC---CCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHH-HHh---hcc
Q 013267 315 LLFGKRLEVNFSKHPNIT---QGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIV-SHL---EEH 387 (446)
Q Consensus 315 ~~~g~~l~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~-~~F---~~~ 387 (446)
.+....|.++|..-.... .+....++.. ...+..+=.-......|.|.|- +...+.++++. +.+ ..-
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~-----~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSD-----YLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhh-----HHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccC
Confidence 455667777775532211 1111111100 0000000000112346788885 44555443333 222 222
Q ss_pred C----CeeEEEEEee----CC--ceEEEEEeCCHHHHHHHHHHhC--CCccC-CCeEEEEeec
Q 013267 388 G----SIVNTKLFEM----NG--KKQALVLFETEEQATEALVCKH--ASSLG-GSIIRISFSQ 437 (446)
Q Consensus 388 G----~v~~~~i~~~----~~--~g~~fV~f~~~~~A~~A~~~l~--~~~~~-g~~l~v~~a~ 437 (446)
+ .++++.++.. +. +.||.+.|-+...|...+..+. +...+ .++..|+.+.
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 3 3667777632 22 6699999999999999998887 55555 6777777655
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.37 E-value=0.12 Score=43.71 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=50.6
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcc-cCce---EEEEEeeCC-------CCeEEEEeCCHHHHHHHHHHhcCCeeCCc--
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSL-YGNI---IRIKLLRNK-------PDHALVQMGDGFQAELAVHFLKGALLFGK-- 319 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~-~G~v---~~v~i~~~~-------~g~afV~f~~~~~A~~A~~~lng~~~~g~-- 319 (446)
...|.|.+||| ++|++++++.++. ++.. ..+.-.... ...|||.|.+.++...-+..++|..|.+.
T Consensus 7 ~~KvVIR~LPP-~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 7 GTKVVIRRLPP-NLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp --EEEEEEE-T-TS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred CceEEEeCCCC-CCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 34899999998 7999999998877 6655 333311221 44899999999999999999999888542
Q ss_pred ---EEEEEEecC
Q 013267 320 ---RLEVNFSKH 328 (446)
Q Consensus 320 ---~l~v~~~~~ 328 (446)
...|+++.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 455666554
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.13 E-value=0.053 Score=51.37 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=56.8
Q ss_pred eEEEEcCCCCCC-CHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 6 KVIHVRNVGHEI-SENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 6 ~~l~v~~lp~~~-te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
+.|-+.-+|..+ |-++|..+|.+||.|.+|.+--.--.|.|+|.+..+|-+|-. .++. .|+++.|+|.|.++.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~a--vlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGA--VLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccc--eecCceeEEEEecCC
Confidence 334455566665 468999999999999999886554569999999999977754 3444 899999999997764
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.59 E-value=0.42 Score=45.32 Aligned_cols=66 Identities=11% Similarity=0.188 Sum_probs=58.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEEeeCC--ceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHG-SIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGG 428 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~--~g~~fV~f~~~~~A~~A~~~l~~~~~~g 428 (446)
+..|+|-.+|..++-.||..++..|- .|.+++++++.. +=.++|.|.+.++|....+.+||+.|.-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 68999999999999999999998774 778889987644 4499999999999999999999998773
No 206
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.22 E-value=0.14 Score=46.64 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=58.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCC--eeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCC-eEEEEee
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGS--IVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFS 436 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~--v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~-~l~v~~a 436 (446)
-++||+||-.++|++||.+....-|. +.+++++.+. +||||+|-..+..+..+.++.|-.+.|-|. ...++|-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 38999999999999999998887774 4556666442 388999999999999999999998888874 3444444
Q ss_pred c
Q 013267 437 Q 437 (446)
Q Consensus 437 ~ 437 (446)
|
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 3
No 207
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=92.20 E-value=0.13 Score=42.51 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=60.0
Q ss_pred EEEEeCCCCCCC-----HHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCC-eEEEEeecC
Q 013267 365 MIHLSTLPQDVT-----EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS-IIRISFSQL 438 (446)
Q Consensus 365 ~l~v~nlp~~~t-----~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~-~l~v~~a~~ 438 (446)
.+.+.+++..+- ......+|.+|....-..++ ++.+...|.|.+++.|..|...+++..|.|+ .++..|+++
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l--rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL--RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH--HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 455556655432 34455667766655555554 3567889999999999999999999999988 999999999
Q ss_pred ccccccCC
Q 013267 439 QSIRENSQ 446 (446)
Q Consensus 439 ~~~~~~~~ 446 (446)
.....++|
T Consensus 90 ~~~~~~~q 97 (193)
T KOG4019|consen 90 GHPESNSQ 97 (193)
T ss_pred CCcccccc
Confidence 88776654
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.20 E-value=0.15 Score=50.65 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=59.8
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEE
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 325 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~ 325 (446)
.++.-++||+|+. +.+..+-++.+....|.|.+++... |+|+.|....-+.+|+..++-..++|..+.+.-
T Consensus 37 ~~~~~~vfv~~~~-~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNIS-YLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchh-hhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3455589999999 5788888999999999997776543 899999999999999999999888887666554
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.00 E-value=0.44 Score=42.73 Aligned_cols=60 Identities=22% Similarity=0.193 Sum_probs=46.9
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecC
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRG 70 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g 70 (446)
=|-|=+.|+. .-.-|..+|+.||.|++...-...+.-+|.|.+.-+|++||+ .+++ .|+|
T Consensus 199 WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~--ii~g 258 (350)
T KOG4285|consen 199 WVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGT--IIDG 258 (350)
T ss_pred eEEEeccCcc-chhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCe--eecc
Confidence 3556666663 446688899999999887777777999999999999999998 4454 4555
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.95 E-value=0.89 Score=31.28 Aligned_cols=55 Identities=5% Similarity=0.042 Sum_probs=43.5
Q ss_pred CCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 16 EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 16 ~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
.++-+|++..++.|+-. +|..++--=||.|.+.++|++|....++. .+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~--~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTGFYIVFNDSKEAERCFRAEDGT--LFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCEEEEEECChHHHHHHHHhcCCC--EEEEEEEEe
Confidence 57889999999999854 45555533579999999999999999888 676666554
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.34 E-value=1.2 Score=31.59 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHhcccC-----ceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEe
Q 013267 264 DRIDEDKLFNLFSLYG-----NIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326 (446)
Q Consensus 264 ~~~~~~~l~~~F~~~G-----~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~ 326 (446)
+.++..+|..++...+ .|-.|.+.. .++||+-. .+.|..++..|++..+.|+.+.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~---~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD---NFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S---S-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee---eEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4688889988887775 445677764 48999984 45899999999999999999999864
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.14 E-value=1.7 Score=29.86 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEE
Q 013267 264 DRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 323 (446)
Q Consensus 264 ~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v 323 (446)
..++-++++..+..|+-. +|..++.| -||-|.|..+|.++....+|..+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 457899999999999954 45555444 589999999999999999999998877654
No 213
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=89.68 E-value=4.9 Score=36.24 Aligned_cols=153 Identities=14% Similarity=0.246 Sum_probs=92.9
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC-------------CeEEEEecChhHHHHHHH----hhccCCc
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK-------------NQALLQMQDVPSAINALQ----FYTNVQP 66 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~-------------~~afV~F~~~~~A~~A~~----~~~~~~~ 66 (446)
.+|.|...|+..+++--++...|..||+|++|.++.+. ....+.|-+.+.+...-+ +|....-
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999876 457899999888755432 2222222
Q ss_pred eecCeEeEEEeccccccccc-----ccCC----------CCCCCCCCcEEEEEEcCCCCCcCHHHH-HHhh---cCCC--
Q 013267 67 TIRGRNVYVQFSSHQELTTM-----EQNA----------QGRGDEPNRILLVTIHHMLYPITVEVL-HQVF---SPHG-- 125 (446)
Q Consensus 67 ~~~g~~i~v~~~~~~~~~~~-----~~~~----------~~~~~~~~~~~~v~v~nl~~~~t~~~l-~~~f---~~~G-- 125 (446)
.++...+.+.|..-...... ..+- .--..+.++.+.|-.. .++.++++ .+.. ..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~---~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK---DPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec---CccchhHHHHHhhhhhccCCCc
Confidence 36667777776542111100 0000 0000112333333222 33433333 2221 1212
Q ss_pred --ceeEEEEEe-------cCCceEEEEEecChhhHHHHHHHhCC
Q 013267 126 --FVEKIVTFQ-------KSAGFQALIQYQLRPSAVVARSSLQG 160 (446)
Q Consensus 126 --~i~~i~~~~-------~~~g~~afv~f~~~~~A~~a~~~l~~ 160 (446)
.++.|.++. -...| |.+.|-+...|.+.++.+..
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~Y-aILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNY-AILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred eEEEEEEEEeccCcccccCCcce-EEEeehhHHhHHHHHHHHHh
Confidence 245666552 23458 99999999999999998763
No 214
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.39 E-value=0.7 Score=33.81 Aligned_cols=72 Identities=15% Similarity=0.010 Sum_probs=45.6
Q ss_pred EEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccccccc-ccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhh
Q 013267 44 ALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTM-EQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVF 121 (446)
Q Consensus 44 afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f 121 (446)
|.|+|...+-|++-++.- ..+..++++.+.|..+......-. ..- ...-+. .+|.|.|+|...++++|++..
T Consensus 1 AlITF~e~~VA~~i~~~~-~~~v~l~~~~~~V~v~P~~~~~~~k~qv---~~~vs~--rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKK-KHPVPLEDCCVRVKVSPVTLGHLQKFQV---FSGVSK--RTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCC-EEEEEECCEEEEEEEEeEecCCceEEEE---EEcccC--CEEEEeCCCCCCChhhheeeE
Confidence 789999999999998843 334568888877775443221110 000 000112 237899999999999887643
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.26 E-value=1.8 Score=42.63 Aligned_cols=78 Identities=23% Similarity=0.379 Sum_probs=64.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhccc----CceEEEEEeeCC-------------C---------------------
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLY----GNIIRIKLLRNK-------------P--------------------- 291 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~----G~v~~v~i~~~~-------------~--------------------- 291 (446)
..+++.|-|.|++++.+...+|.-+|+.| |.|.+|.|.... +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45667999999999899999999998776 589999887621 2
Q ss_pred ------------------CeEEEEeCCHHHHHHHHHHhcCCeeCC--cEEEEEEec
Q 013267 292 ------------------DHALVQMGDGFQAELAVHFLKGALLFG--KRLEVNFSK 327 (446)
Q Consensus 292 ------------------g~afV~f~~~~~A~~A~~~lng~~~~g--~~l~v~~~~ 327 (446)
=||.|+|.+...|......|.|..|.. ..|-++|-.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 089999999999999999999999965 466666644
No 216
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.82 E-value=1.5 Score=31.06 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=34.9
Q ss_pred CCCHHHHHHhccCccc-----eeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 16 EISENDLLQLFQPFGV-----ITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 16 ~~te~~l~~~f~~~G~-----i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
.++..+|..++..-+. |-+|.+... |+||+-. .+.|.++++.+++. .++|+++.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--~S~vev~-~~~a~~v~~~l~~~--~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--FSFVEVP-EEVAEKVLEALNGK--KIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---EEEEE--TT-HHHHHHHHTT----SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--EEEEEEC-HHHHHHHHHHhcCC--CCCCeeEEEEEC
Confidence 4788888888876533 446667665 8999884 55888999999988 899999999853
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.40 E-value=3 Score=41.15 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=62.4
Q ss_pred CCCccEEEEeCCCC-CCCHHHHHHHhhcc----CCeeEEEEEeeC------------C----------------------
Q 013267 360 CSPTKMIHLSTLPQ-DVTEEEIVSHLEEH----GSIVNTKLFEMN------------G---------------------- 400 (446)
Q Consensus 360 ~~~~~~l~v~nlp~-~~t~~~l~~~F~~~----G~v~~~~i~~~~------------~---------------------- 400 (446)
+.++++|.|.||.. .+...||.-+|+.| |.|.+|.|++.. +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45688999999986 47789999999876 699999997440 0
Q ss_pred ---------------ce--EEEEEeCCHHHHHHHHHHhCCCccC--CCeEEEEee
Q 013267 401 ---------------KK--QALVLFETEEQATEALVCKHASSLG--GSIIRISFS 436 (446)
Q Consensus 401 ---------------~g--~~fV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~a 436 (446)
.+ ||.|+|.+++.|.+..+.|.|..+. +..|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 11 8999999999999999999999998 556666554
No 218
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=86.83 E-value=1.4 Score=32.33 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=44.5
Q ss_pred EEEEeCCHHHHHHHHHHhcC-CeeCCcEEEEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCC
Q 013267 294 ALVQMGDGFQAELAVHFLKG-ALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 372 (446)
Q Consensus 294 afV~f~~~~~A~~A~~~lng-~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 372 (446)
|+|+|.+..-|++.++.-.- ..+++..+.|.-+.-... ...++. -.....+++|.|.|||
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~------------~~~k~q-------v~~~vs~rtVlvsgip 61 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLG------------HLQKFQ-------VFSGVSKRTVLVSGIP 61 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecC------------CceEEE-------EEEcccCCEEEEeCCC
Confidence 68999999999998883222 334555554443221110 000000 0122345799999999
Q ss_pred CCCCHHHHHHHhh
Q 013267 373 QDVTEEEIVSHLE 385 (446)
Q Consensus 373 ~~~t~~~l~~~F~ 385 (446)
...++++|++...
T Consensus 62 ~~l~ee~l~D~Le 74 (88)
T PF07292_consen 62 DVLDEEELRDKLE 74 (88)
T ss_pred CCCChhhheeeEE
Confidence 9999999997654
No 219
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.80 E-value=0.45 Score=47.40 Aligned_cols=70 Identities=11% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
+|.-++||++|..-++.+-+......+|.|.+++... |+|..|.....+.+|+..++.. .++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~--~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTEL--NIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhccc--CCCcchhhccc
Confidence 4677899999999999999999999999998887777 8999999999999999998876 78888766654
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=68.41 E-value=2.6 Score=37.39 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=52.9
Q ss_pred CccEEEEeCCCCC------------CCHHHHHHHhhccCCeeEEEEEe---e----CC-------ceEE---------EE
Q 013267 362 PTKMIHLSTLPQD------------VTEEEIVSHLEEHGSIVNTKLFE---M----NG-------KKQA---------LV 406 (446)
Q Consensus 362 ~~~~l~v~nlp~~------------~t~~~l~~~F~~~G~v~~~~i~~---~----~~-------~g~~---------fV 406 (446)
-..+||+.+||-. .+++.|+..|..||.|..|.|+- . ++ .||+ ||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3468999888864 35789999999999999998851 0 11 3333 45
Q ss_pred EeCCHHHHHHHHHHhCCCccC----C----CeEEEEeecCccc
Q 013267 407 LFETEEQATEALVCKHASSLG----G----SIIRISFSQLQSI 441 (446)
Q Consensus 407 ~f~~~~~A~~A~~~l~~~~~~----g----~~l~v~~a~~~~~ 441 (446)
.|..-.--..|+..|.|..+. | -.++|.|-++++.
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrhl 270 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRHL 270 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhhh
Confidence 555555555666666665432 3 3677888776543
No 221
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=66.40 E-value=6.9 Score=32.04 Aligned_cols=106 Identities=13% Similarity=0.004 Sum_probs=66.4
Q ss_pred CCHHHHHHHh----cccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCCCCCCccccc
Q 013267 266 IDEDKLFNLF----SLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYM 341 (446)
Q Consensus 266 ~~~~~l~~~F----~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~ 341 (446)
.+-..|.+.+ ...|.+ .+..-..++..+.|.+.+++.+++. .....+.|..+.+..=.+......
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~---~i~~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~------- 97 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGV---KIRDLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE------- 97 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcE---EEEEeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc-------
Confidence 4555554444 444544 3433347899999999999999988 344555666666554332210000
Q ss_pred cCCcccccccccccccccCCCccEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEEe
Q 013267 342 NSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFE 397 (446)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~v~~~~i~~ 397 (446)
.... .-.-=|.|.|||.. ++++-++.+.+..|.+.++....
T Consensus 98 ---------~~~~------~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 98 ---------VKFE------HIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ---------ccee------ccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 0000 00123667899986 78999999999999998888753
No 222
>PF14893 PNMA: PNMA
Probab=63.09 E-value=4.6 Score=37.79 Aligned_cols=47 Identities=15% Similarity=0.354 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccC-ccceeEEEEEcc-------CCeEEEEecC
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQP-FGVITKLVMLRA-------KNQALLQMQD 50 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~-~G~i~~~~i~~~-------~~~afV~F~~ 50 (446)
+.|.|.|.+||.++++++|.+.+.. +-++-.+++... ..-|+|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 5688999999999999999987743 222324455543 1346677643
No 223
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=58.91 E-value=15 Score=34.56 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=39.0
Q ss_pred EEEEecChhHHHHHHHhhccCCceecCeEeEEEecccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcC
Q 013267 44 ALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSP 123 (446)
Q Consensus 44 afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~ 123 (446)
|||+|.+..+|+.|.+.+... +++..+++.+.+.+. |...|+..+..+..++..+.-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~----~~~~~~v~~APeP~D-------------------I~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK----RPNSWRVSPAPEPDD-------------------IIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC----CCCCceEeeCCCccc-------------------ccccccCCChHHHHHHHHHHH
Confidence 799999999999999976544 334556665443211 677888766666667665554
No 224
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=57.16 E-value=14 Score=34.89 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=44.1
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEc-c--------CCeEEEEecChhHHHHHHHhhccC
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR-A--------KNQALLQMQDVPSAINALQFYTNV 64 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~-~--------~~~afV~F~~~~~A~~A~~~~~~~ 64 (446)
..|.|+.||+.+++++|.+...+|-.-.....+. . .+.|||.|...++.......+++.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 4588999999999999999998875533333332 1 155999999999977777765554
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=55.92 E-value=17 Score=28.33 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=26.6
Q ss_pred cEEEEeCCCCC---------CCHHHHHHHhhccCCeeEEEEEeeCC-ceEEEEEeCCHHHH
Q 013267 364 KMIHLSTLPQD---------VTEEEIVSHLEEHGSIVNTKLFEMNG-KKQALVLFETEEQA 414 (446)
Q Consensus 364 ~~l~v~nlp~~---------~t~~~l~~~F~~~G~v~~~~i~~~~~-~g~~fV~f~~~~~A 414 (446)
.++.|.|+|.. .+-++|++.|+.|..++-.-+....+ .|+++|+|..--..
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHH
Confidence 35667778653 35689999999998875433333223 77999999886543
No 226
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=54.40 E-value=13 Score=30.39 Aligned_cols=110 Identities=15% Similarity=0.015 Sum_probs=67.1
Q ss_pred CCCCHHHHHHhccCc-cceeEEEEEc-cCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccccccccccCCCC
Q 013267 15 HEISENDLLQLFQPF-GVITKLVMLR-AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQG 92 (446)
Q Consensus 15 ~~~te~~l~~~f~~~-G~i~~~~i~~-~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~ 92 (446)
...+...|.+.+... +....+.+.. +.++..+.|.+.+++.++++ ..+..++|..+.++.=.+.......
T Consensus 27 ~~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W~~~~~~~~~----- 98 (153)
T PF14111_consen 27 KPISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRWSPDFNPSEV----- 98 (153)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe---cccccccccchhhhhhccccccccc-----
Confidence 345666666655432 3322333333 45788899999999999876 3344578877776632221110000
Q ss_pred CCCCCCcEEEEEEcCCC-CCcCHHHHHHhhcCCCceeEEEEEe
Q 013267 93 RGDEPNRILLVTIHHML-YPITVEVLHQVFSPHGFVEKIVTFQ 134 (446)
Q Consensus 93 ~~~~~~~~~~v~v~nl~-~~~t~~~l~~~f~~~G~i~~i~~~~ 134 (446)
.......=|.|.||| .-++++.++.+-+..|.+.++....
T Consensus 99 --~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 99 --KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred --ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 000111226678999 4578888999999999999887654
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=54.04 E-value=8.5 Score=32.12 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=53.4
Q ss_pred EEEEcCCCCCCCH-----HHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCe-EeEEEeccc
Q 013267 7 VIHVRNVGHEISE-----NDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGR-NVYVQFSSH 80 (446)
Q Consensus 7 ~l~v~~lp~~~te-----~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~-~i~v~~~~~ 80 (446)
++.+.+|+..+-. ....++|.+|.+..-..+++..+..-|.|.+.+.|.+|+..+++. .+.|+ .++.-++.+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~--~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHST--SFNGKNELKLYFAQP 89 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhc--ccCCCceEEEEEccC
Confidence 4566666665422 223356666766666667777778889999999999999999998 78888 777777655
Q ss_pred c
Q 013267 81 Q 81 (446)
Q Consensus 81 ~ 81 (446)
.
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 4
No 228
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.37 E-value=30 Score=32.77 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=45.6
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccc-eeEEEEEccCCeEEEEecChhHHHHHHHh
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGV-ITKLVMLRAKNQALLQMQDVPSAINALQF 60 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~-i~~~~i~~~~~~afV~F~~~~~A~~A~~~ 60 (446)
.+|-|-+.|...-.+||...|+.|+. --+|+++.|. .||--|.+...|..|+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-eeEEeecchHHHHHHhhc
Confidence 46889999999888999999999954 4577777765 699999999999999875
No 229
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=47.33 E-value=83 Score=29.99 Aligned_cols=77 Identities=14% Similarity=0.266 Sum_probs=57.6
Q ss_pred cCCCccEEEEeCCCC-CCCHHHHHHHhhcc----CCeeEEEEEeeC----------------------------------
Q 013267 359 CCSPTKMIHLSTLPQ-DVTEEEIVSHLEEH----GSIVNTKLFEMN---------------------------------- 399 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~----G~v~~~~i~~~~---------------------------------- 399 (446)
.+.++++|.|.|+.. .+...+|...|+.| |.+..|.|++..
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 456789999999986 47789999998865 577778886430
Q ss_pred ----------------Cc------------------e-EEEEEeCCHHHHHHHHHHhCCCccC--CCeEEEEe
Q 013267 400 ----------------GK------------------K-QALVLFETEEQATEALVCKHASSLG--GSIIRISF 435 (446)
Q Consensus 400 ----------------~~------------------g-~~fV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~ 435 (446)
.. - ||.|+|.+...+......+.|..+. +..+-+.|
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 01 1 7889999999999988999998877 34444444
No 230
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.91 E-value=46 Score=31.55 Aligned_cols=56 Identities=20% Similarity=0.397 Sum_probs=47.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCe-eEEEEEeeCCceEEEEEeCCHHHHHHHHHH
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSI-VNTKLFEMNGKKQALVLFETEEQATEALVC 420 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v-~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~ 420 (446)
-..+|-|.++|...-.+||...|+.|+.- -+++|++ ...+|--|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD---dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD---DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee---cceeEEeecchHHHHHHhhc
Confidence 45799999999999999999999999744 4577874 45799999999999999965
No 231
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.87 E-value=6 Score=35.13 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=43.5
Q ss_pred eEEEEcCCCCCC------------CHHHHHHhccCccceeEEEEE---------ccC-------Ce---------EEEEe
Q 013267 6 KVIHVRNVGHEI------------SENDLLQLFQPFGVITKLVML---------RAK-------NQ---------ALLQM 48 (446)
Q Consensus 6 ~~l~v~~lp~~~------------te~~l~~~f~~~G~i~~~~i~---------~~~-------~~---------afV~F 48 (446)
-+|++.+||-.| +|+.|+..|..||.|.+|.|. .++ || |||.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 368888988654 578899999999998776653 111 22 77888
Q ss_pred cChhHHHHHHHhhccC
Q 013267 49 QDVPSAINALQFYTNV 64 (446)
Q Consensus 49 ~~~~~A~~A~~~~~~~ 64 (446)
.....-..|+..|.+.
T Consensus 230 meykgfa~amdalr~~ 245 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGM 245 (445)
T ss_pred HHHHhHHHHHHHHhcc
Confidence 8877777788777765
No 232
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=44.12 E-value=10 Score=26.15 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=16.8
Q ss_pred CceEEEEcCCCCCCCHHHHHHh
Q 013267 4 PSKVIHVRNVGHEISENDLLQL 25 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~ 25 (446)
-||++|||+||..|-++.=...
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~ 47 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSW 47 (67)
T ss_pred cCceEEECCCChHHHHcCcchH
Confidence 5799999999998866544333
No 233
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=43.92 E-value=57 Score=23.73 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=38.8
Q ss_pred EEcCCCCCCCHHHHHHhccC-ccc-eeEEEEEccC---CeEEEEecChhHHHHHHHhh
Q 013267 9 HVRNVGHEISENDLLQLFQP-FGV-ITKLVMLRAK---NQALLQMQDVPSAINALQFY 61 (446)
Q Consensus 9 ~v~~lp~~~te~~l~~~f~~-~G~-i~~~~i~~~~---~~afV~F~~~~~A~~A~~~~ 61 (446)
|.-.+++..+-.+|.+.++. ||. |.+|..+.-. .-|||.+....+|....+.+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 34446688899999988876 465 6666665432 44999999999998886644
No 234
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=43.22 E-value=66 Score=21.79 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.7
Q ss_pred HHHHHHHhhccCCeeEEEE
Q 013267 377 EEEIVSHLEEHGSIVNTKL 395 (446)
Q Consensus 377 ~~~l~~~F~~~G~v~~~~i 395 (446)
..+||++|+..|.|.-+.+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3789999999999966555
No 235
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.87 E-value=64 Score=23.02 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=38.6
Q ss_pred EEcCCCCCCCHHHHHHhccC-ccc-eeEEEEEccC---CeEEEEecChhHHHHHHHhh
Q 013267 9 HVRNVGHEISENDLLQLFQP-FGV-ITKLVMLRAK---NQALLQMQDVPSAINALQFY 61 (446)
Q Consensus 9 ~v~~lp~~~te~~l~~~f~~-~G~-i~~~~i~~~~---~~afV~F~~~~~A~~A~~~~ 61 (446)
|+-.+++..+-.+|++.++. ||. |.+|..+.-+ .-|||++...++|...-+.+
T Consensus 17 y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 44456788999999988876 454 6666665433 34999999999998876543
No 236
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=41.08 E-value=1.3e+02 Score=28.81 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=59.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhccc----CceEEEEEeeCC-----------------------------------
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLY----GNIIRIKLLRNK----------------------------------- 290 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~----G~v~~v~i~~~~----------------------------------- 290 (446)
..++..|-|.|++++.+...+|...|+.| |.+..|.|....
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 45566899999998889999998888765 466667665410
Q ss_pred ----------------CC-------------------eEEEEeCCHHHHHHHHHHhcCCeeCC--cEEEEEEec
Q 013267 291 ----------------PD-------------------HALVQMGDGFQAELAVHFLKGALLFG--KRLEVNFSK 327 (446)
Q Consensus 291 ----------------~g-------------------~afV~f~~~~~A~~A~~~lng~~~~g--~~l~v~~~~ 327 (446)
.| ||.|++.+...+......+.|..+.. ..+-++|..
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 01 78999999999999999999988865 456666644
No 237
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=41.07 E-value=26 Score=27.33 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=23.9
Q ss_pred EEEEcCCCCC---------CCHHHHHHhccCccceeEEEEEccC----CeEEEEecChh
Q 013267 7 VIHVRNVGHE---------ISENDLLQLFQPFGVITKLVMLRAK----NQALLQMQDVP 52 (446)
Q Consensus 7 ~l~v~~lp~~---------~te~~l~~~f~~~G~i~~~~i~~~~----~~afV~F~~~~ 52 (446)
++.|-|+|.+ ++.++|.+.|+.|.++. ++.+-++ ++|.|+|.+.-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCCh
Confidence 4567777654 46789999999998874 5554332 77999998843
No 238
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=39.48 E-value=42 Score=30.23 Aligned_cols=48 Identities=10% Similarity=0.193 Sum_probs=36.6
Q ss_pred EEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhh
Q 013267 102 LVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPS 150 (446)
Q Consensus 102 ~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~ 150 (446)
-|+++||+.++-..+|+....+-|-+---.......|- ||+.|.+...
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k-~flh~~~~~~ 379 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGK-CFLHFGNRKG 379 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcc-eeEecCCccC
Confidence 48999999999999999888887765433344555664 9999987543
No 239
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=39.38 E-value=1.4e+02 Score=21.29 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=38.7
Q ss_pred EEEeCCCCCCCCHHHHHHHhcc-cC-ceEEEEEeeCC--CCeEEEEeCCHHHHHHHHHHh
Q 013267 256 VLVSNLNSDRIDEDKLFNLFSL-YG-NIIRIKLLRNK--PDHALVQMGDGFQAELAVHFL 311 (446)
Q Consensus 256 l~v~nl~~~~~~~~~l~~~F~~-~G-~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~l 311 (446)
-|+..+++ ..+..+|++.++. || .|.+|..+.-. .--|||++...++|...-..+
T Consensus 16 ~y~F~V~~-~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDR-KATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECC-CCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 45556665 5899999988876 56 56666654433 347999999999988765533
No 240
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=38.40 E-value=41 Score=23.51 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=24.4
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCccCCCe
Q 013267 402 KQALVLFETEEQATEALVCKHASSLGGSI 430 (446)
Q Consensus 402 g~~fV~f~~~~~A~~A~~~l~~~~~~g~~ 430 (446)
.+++|.|.+..+|++|-+.|+...+..+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 36899999999999999999987776543
No 241
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=37.91 E-value=1.5e+02 Score=21.64 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=40.4
Q ss_pred EEeCCCCCCCHHHHHHHhhc-cC-CeeEEEEEee-CCceEEEEEeCCHHHHHHHHHHh
Q 013267 367 HLSTLPQDVTEEEIVSHLEE-HG-SIVNTKLFEM-NGKKQALVLFETEEQATEALVCK 421 (446)
Q Consensus 367 ~v~nlp~~~t~~~l~~~F~~-~G-~v~~~~i~~~-~~~g~~fV~f~~~~~A~~A~~~l 421 (446)
|.--.+...+..+|++.++. || .|.+|..+.. .+..-|+|.+..-++|......+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 33347889999999999886 45 6677766533 34568999999999998865544
No 242
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=34.72 E-value=53 Score=29.63 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=39.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccc-eeEEEEEccCCeEEEEecChhH
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGV-ITKLVMLRAKNQALLQMQDVPS 53 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~-i~~~~i~~~~~~afV~F~~~~~ 53 (446)
..-|++.|||.++--.||...+.+.|- -.++.+.-..+-||+.|.+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccC
Confidence 356999999999999999999987764 3466666667889999987543
No 243
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.95 E-value=76 Score=22.99 Aligned_cols=36 Identities=14% Similarity=0.004 Sum_probs=25.2
Q ss_pred ceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCe
Q 013267 280 NIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAL 315 (446)
Q Consensus 280 ~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~ 315 (446)
.|.++-...+-+||.|||=.+..+...|++.+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 466665555559999999999999999998776543
No 244
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=31.74 E-value=71 Score=25.72 Aligned_cols=41 Identities=12% Similarity=0.292 Sum_probs=27.2
Q ss_pred eEEEEcCC----CCCCCHHHHHHhccCccceeEEEEEccCCeEEEE
Q 013267 6 KVIHVRNV----GHEISENDLLQLFQPFGVITKLVMLRAKNQALLQ 47 (446)
Q Consensus 6 ~~l~v~~l----p~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~ 47 (446)
-+.++|+| ...+...||++.|...| ..+|+..-..|-..++
T Consensus 4 yiaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~SGNvvf~ 48 (137)
T PF08002_consen 4 YIALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQSGNVVFE 48 (137)
T ss_dssp EEEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETTTTEEEEE
T ss_pred EEEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEeeCCEEEe
Confidence 46788887 33489999999999888 5677777665555555
No 245
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=30.73 E-value=1.5e+02 Score=18.99 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=31.8
Q ss_pred CHHHHHHHhhccC-CeeEEEEEeeC-CceEEEEEeCCHHHHHHHH
Q 013267 376 TEEEIVSHLEEHG-SIVNTKLFEMN-GKKQALVLFETEEQATEAL 418 (446)
Q Consensus 376 t~~~l~~~F~~~G-~v~~~~i~~~~-~~g~~fV~f~~~~~A~~A~ 418 (446)
.-.++.+.+.+.| .|.++...... +.....+.+.+.+.|.+++
T Consensus 11 ~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 11 RLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred hHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 3567778888886 66677766544 4668888999988888876
No 246
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.69 E-value=33 Score=30.07 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=28.7
Q ss_pred CCCCceEEEEcCCCCCCCHHHHHHhccCcccee
Q 013267 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVIT 33 (446)
Q Consensus 1 ~~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~ 33 (446)
|...++++|+-|||...|++.|..+.+.+|-+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 345678999999999999999999999998553
No 247
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.78 E-value=1.7e+02 Score=19.17 Aligned_cols=54 Identities=7% Similarity=0.045 Sum_probs=40.2
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecCh----hHHHHHHHh
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDV----PSAINALQF 60 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~----~~A~~A~~~ 60 (446)
++.|.|+.=.--...|.+.+...-.|.++.+....+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 356666655556788888888887799999998889999999865 444555543
No 248
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.48 E-value=86 Score=22.70 Aligned_cols=34 Identities=9% Similarity=0.107 Sum_probs=24.9
Q ss_pred ceeEEEEEecCCceEEEEEecChhhHHHHHHHhCC
Q 013267 126 FVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQG 160 (446)
Q Consensus 126 ~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~~ 160 (446)
.|..+...+.-+|| -||+=.+..++..|++.+.+
T Consensus 33 ~I~Si~~~~~lkGy-IyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDSLKGY-IYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TTSTSE-EEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCCceE-EEEEeCCHHHHHHHHhcccc
Confidence 45566666678998 99999999999999987665
No 249
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=28.40 E-value=87 Score=21.30 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=25.3
Q ss_pred CCHHHHHHHhhccCCeeEEEEEeeCC--ceEEEE
Q 013267 375 VTEEEIVSHLEEHGSIVNTKLFEMNG--KKQALV 406 (446)
Q Consensus 375 ~t~~~l~~~F~~~G~v~~~~i~~~~~--~g~~fV 406 (446)
.-+.+|.+.|-+-..|.++.+...|. +|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 34688899998889999999986554 777776
No 250
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=28.05 E-value=1.3e+02 Score=20.50 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=24.2
Q ss_pred HHHHHhccC--ccceeEEEEEccCCeEE-EEecCh
Q 013267 20 NDLLQLFQP--FGVITKLVMLRAKNQAL-LQMQDV 51 (446)
Q Consensus 20 ~~l~~~f~~--~G~i~~~~i~~~~~~af-V~F~~~ 51 (446)
++|.+.+.. .|.|...++..++|.++ |+|.+.
T Consensus 18 ~~l~~~l~~~~~g~I~~fKmtDG~giG~vv~~~ng 52 (64)
T PF11061_consen 18 KELVDKLGKNPIGTIKGFKMTDGSGIGVVVEFSNG 52 (64)
T ss_pred HHHHHHhccCCcEEEEEEEEecCCcEEEEEEecCC
Confidence 455566655 89999999999988755 888764
No 251
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=25.21 E-value=79 Score=29.66 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=25.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 294 ALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 294 afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
|||+|.+..+|+.|.+.+.... ++.+++..+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999665443 345566655544
No 252
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=25.12 E-value=1.8e+02 Score=20.52 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=32.2
Q ss_pred HHHHHhccCccceeEEEEEcc--CCeEEEEecChhHHHHHHHhhc
Q 013267 20 NDLLQLFQPFGVITKLVMLRA--KNQALLQMQDVPSAINALQFYT 62 (446)
Q Consensus 20 ~~l~~~f~~~G~i~~~~i~~~--~~~afV~F~~~~~A~~A~~~~~ 62 (446)
.++.+.+..+| +.-..+--. +++.|+-+.+.++|.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45666677888 556777777 7888888889999888887764
No 253
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.00 E-value=2.2e+02 Score=19.06 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=35.1
Q ss_pred EEEEeCCCCCC-CHHHHHHHhhccC-CeeEEEEEeeCCceEEEEEeCCHHHHHHHHHH
Q 013267 365 MIHLSTLPQDV-TEEEIVSHLEEHG-SIVNTKLFEMNGKKQALVLFETEEQATEALVC 420 (446)
Q Consensus 365 ~l~v~nlp~~~-t~~~l~~~F~~~G-~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~ 420 (446)
.|.|. ++... .-.++.++|.+.| .|.++......+++...+.+.+.+.|.++++.
T Consensus 3 ri~v~-v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 3 QLSVF-LENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred EEEEE-EcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 34442 44433 4688999998887 56677766554455656667776677766643
No 254
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=24.69 E-value=1.1e+02 Score=25.60 Aligned_cols=63 Identities=16% Similarity=0.015 Sum_probs=43.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCc-cceeEEEEEccCCeEE---EEecChhHHHHHHHhhccCCce
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPF-GVITKLVMLRAKNQAL---LQMQDVPSAINALQFYTNVQPT 67 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~-G~i~~~~i~~~~~~af---V~F~~~~~A~~A~~~~~~~~~~ 67 (446)
..+|-|..=|+.++-++|.++|..- .+-..-+--.|.|.-| |-|.+.|+.+.|.+.+...+..
T Consensus 75 aEvvrV~ydpk~~sy~~Lld~Fw~~HdPtt~n~QG~D~GtQYRS~I~~~s~eq~k~A~~s~e~~Q~k 141 (191)
T KOG1635|consen 75 AEVVRVQYDPKVISYEELLDFFWSRHDPTTLNRQGNDVGTQYRSGIYTYSPEQEKLARESKEREQKK 141 (191)
T ss_pred ceEEEEEeCcccccHHHHHHHHHHcCCchhhhccCCcccceeeeeeeeCCHHHHHHHHHHHHHHHhc
Confidence 3578888899999999999999543 3332222223334433 7888999999998887766544
No 255
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=24.18 E-value=75 Score=26.65 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=34.7
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-------CCeEEEEecChhHHHHHHHhh
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-------KNQALLQMQDVPSAINALQFY 61 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-------~~~afV~F~~~~~A~~A~~~~ 61 (446)
|+++.. |.+-..++|.++-+ |.+.++.+.+. +|-.||.|.+.++|..++...
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 344444 33334455555544 78888877643 266999999999999987743
No 256
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.73 E-value=13 Score=35.48 Aligned_cols=75 Identities=9% Similarity=-0.070 Sum_probs=57.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 365 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 365 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.-++..+|...+++++.-+|..||.|..+...+.-. +-.+||.-.+ ++|..++..+....+-|..++++.++...
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 345677899999999999999999999887764322 3366776554 56788888888888888888888887654
No 257
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=23.61 E-value=92 Score=29.58 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=46.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeE-EEEEeeC------CceEEEEEeCCHHHHHHHHHHhCCCccC
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVN-TKLFEMN------GKKQALVLFETEEQATEALVCKHASSLG 427 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~-~~i~~~~------~~g~~fV~f~~~~~A~~A~~~l~~~~~~ 427 (446)
+.+.|.+||+..++.++.+-..++-.-.. ..+.+.+ -.+.++|.|...++-+......+|..+-
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 56889999999999999998887643322 2222111 1558999999999988888888887654
No 258
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=22.93 E-value=2.8e+02 Score=21.04 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=31.2
Q ss_pred HHHHHHhhccCCeeEEEEEeeC-CceEEEEEeCCHHHHHHHH
Q 013267 378 EEIVSHLEEHGSIVNTKLFEMN-GKKQALVLFETEEQATEAL 418 (446)
Q Consensus 378 ~~l~~~F~~~G~v~~~~i~~~~-~~g~~fV~f~~~~~A~~A~ 418 (446)
.+|..+.++.|.-....+++.. +.-||++++.|.++..+++
T Consensus 27 PE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHH
Confidence 6788888999977766666432 3559999999888877776
No 259
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=22.52 E-value=3.3e+02 Score=20.28 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=35.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhh-------cc-CCeeEEEEE---------eeCCce-EEEEEeCCHHHHHHHHHHh
Q 013267 365 MIHLSTLPQDVTEEEIVSHLE-------EH-GSIVNTKLF---------EMNGKK-QALVLFETEEQATEALVCK 421 (446)
Q Consensus 365 ~l~v~nlp~~~t~~~l~~~F~-------~~-G~v~~~~i~---------~~~~~g-~~fV~f~~~~~A~~A~~~l 421 (446)
+++| |.++.+++++....+ .. |.|.++.-. ....+| |.++.|...-++.+.++..
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~ 82 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKA 82 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHH
Confidence 5666 667777766665544 44 466555432 112366 8899999888888877554
No 260
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=22.05 E-value=1.4e+02 Score=20.66 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=27.6
Q ss_pred CccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 28 PFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 28 ~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.-|.|.+|+++...+.. .-.++|.+|++.....+...+|+++.+.+
T Consensus 26 ~~G~v~~~~v~~s~~~~----~l~~~a~~~v~~~~~~p~~~~g~~~~~~~ 71 (79)
T PF03544_consen 26 PDGRVSDVRVIQSSGPP----ILDEAALRAVKKWRFKPAPKNGKPVKVTY 71 (79)
T ss_dssp TTTEEEEEEEEEESSSS----CSHHHHHHHHCC-EE-TT--CCEECEEEE
T ss_pred CCCCEEEEEEEEccCHH----HHHHHHHHHHHhCCCCCCCcCCEEEEEEE
Confidence 44677777777665432 24677888888766666567787766664
No 261
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.74 E-value=33 Score=23.68 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=29.0
Q ss_pred HHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhC
Q 013267 378 EEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 422 (446)
Q Consensus 378 ~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~ 422 (446)
++|++.|..+....++..+ .+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh------hhccCCCCHHHHHHHHHHhh
Confidence 6888888776655443322 48999999999999887654
No 262
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=20.49 E-value=88 Score=27.54 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=30.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEE
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLF 396 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~ 396 (446)
...++|+-|+|...|++-|.+..+..|.+..+.+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 34799999999999999999999999988776663
No 263
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=20.34 E-value=2.9e+02 Score=20.80 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHhccCccceeEEEEEccC---CeEEEEecChhHHHHHHHhhccC
Q 013267 14 GHEISENDLLQLFQPFGVITKLVMLRAK---NQALLQMQDVPSAINALQFYTNV 64 (446)
Q Consensus 14 p~~~te~~l~~~f~~~G~i~~~~i~~~~---~~afV~F~~~~~A~~A~~~~~~~ 64 (446)
..+-++++|.-+...-|.|.+|.+-..- =.|-+.-.+.+|+.++++.++..
T Consensus 6 ~~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~~ 59 (98)
T PF02829_consen 6 TPDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEKS 59 (98)
T ss_dssp -GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhcc
Confidence 3455678888888877889999887642 23789999999999999988754
Done!