Query 013267
Match_columns 446
No_of_seqs 162 out of 2761
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 07:21:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.7E-41 9.4E-46 312.4 30.1 236 102-443 24-268 (284)
2 3smz_A Protein raver-1, ribonu 100.0 4.5E-41 1.5E-45 311.0 27.8 236 3-330 20-265 (284)
3 2ghp_A U4/U6 snRNA-associated 100.0 8.6E-41 2.9E-45 310.4 25.5 238 99-439 40-291 (292)
4 2ghp_A U4/U6 snRNA-associated 100.0 2.7E-40 9.3E-45 307.0 23.8 237 3-329 39-291 (292)
5 3tyt_A Heterogeneous nuclear r 100.0 4.1E-34 1.4E-38 249.2 21.4 185 251-435 2-203 (205)
6 2adc_A Polypyrimidine tract-bi 100.0 7.9E-33 2.7E-37 246.8 22.8 189 250-439 31-228 (229)
7 4f02_A Polyadenylate-binding p 100.0 2E-32 6.7E-37 241.4 20.9 165 251-442 13-184 (213)
8 1qm9_A Polypyrimidine tract-bi 100.0 1.7E-32 5.9E-37 239.4 17.8 186 253-439 3-197 (198)
9 1b7f_A Protein (SXL-lethal pro 100.0 1.5E-30 5.3E-35 220.9 21.9 156 252-436 2-168 (168)
10 3md3_A Nuclear and cytoplasmic 100.0 1.6E-30 5.3E-35 220.4 20.9 158 254-438 1-166 (166)
11 1fxl_A Paraneoplastic encephal 100.0 3.1E-30 1.1E-34 218.7 21.0 155 253-436 2-167 (167)
12 2qfj_A FBP-interacting repress 100.0 2.9E-30 9.9E-35 228.6 18.9 174 252-443 27-209 (216)
13 1fxl_A Paraneoplastic encephal 100.0 7.8E-30 2.7E-34 216.3 19.5 156 4-175 1-167 (167)
14 4f02_A Polyadenylate-binding p 100.0 1.3E-30 4.3E-35 229.8 14.7 160 3-178 13-181 (213)
15 3pgw_A U1-A; protein-RNA compl 100.0 1.9E-29 6.4E-34 232.7 22.2 187 250-438 6-282 (282)
16 1l3k_A Heterogeneous nuclear r 100.0 1.4E-29 4.8E-34 220.7 20.2 169 250-443 10-187 (196)
17 1b7f_A Protein (SXL-lethal pro 100.0 2.3E-29 8E-34 213.6 19.1 156 4-175 2-168 (168)
18 2g4b_A Splicing factor U2AF 65 100.0 2.5E-29 8.4E-34 214.3 19.1 154 252-436 3-171 (172)
19 2yh0_A Splicing factor U2AF 65 100.0 5.3E-29 1.8E-33 217.4 21.0 179 252-441 3-196 (198)
20 3nmr_A Cugbp ELAV-like family 100.0 1E-28 3.6E-33 211.0 21.0 158 252-437 2-175 (175)
21 2cjk_A Nuclear polyadenylated 100.0 6.5E-30 2.2E-34 216.8 13.1 157 252-440 2-167 (167)
22 1fje_B Nucleolin RBD12, protei 100.0 2.1E-29 7.1E-34 215.4 14.0 162 250-440 10-175 (175)
23 3md3_A Nuclear and cytoplasmic 100.0 1.5E-28 5.1E-33 208.1 17.5 155 6-176 1-165 (166)
24 3tyt_A Heterogeneous nuclear r 100.0 1.1E-28 3.6E-33 215.0 16.8 170 3-175 2-204 (205)
25 3sde_A Paraspeckle component 1 100.0 6.7E-28 2.3E-32 219.2 22.1 159 246-440 15-180 (261)
26 2adc_A Polypyrimidine tract-bi 100.0 2.3E-28 7.7E-33 217.9 18.1 170 3-177 32-227 (229)
27 2g4b_A Splicing factor U2AF 65 100.0 1.9E-28 6.6E-33 208.7 16.9 154 3-175 2-171 (172)
28 3nmr_A Cugbp ELAV-like family 100.0 7.5E-28 2.6E-32 205.7 18.3 157 4-175 2-174 (175)
29 1qm9_A Polypyrimidine tract-bi 100.0 4.4E-28 1.5E-32 211.4 15.6 169 4-177 2-196 (198)
30 3pgw_A U1-A; protein-RNA compl 100.0 1.1E-26 3.7E-31 214.2 24.8 224 100-327 9-281 (282)
31 2cjk_A Nuclear polyadenylated 100.0 3.5E-28 1.2E-32 206.1 13.7 154 3-177 1-165 (167)
32 2qfj_A FBP-interacting repress 100.0 3.8E-28 1.3E-32 214.9 14.3 167 4-177 27-204 (216)
33 2yh0_A Splicing factor U2AF 65 100.0 1.5E-27 5.1E-32 208.1 17.3 170 3-178 2-194 (198)
34 1l3k_A Heterogeneous nuclear r 100.0 2E-27 6.9E-32 207.0 17.0 162 3-178 11-183 (196)
35 1fje_B Nucleolin RBD12, protei 99.9 4.3E-27 1.5E-31 200.9 14.7 158 3-177 11-173 (175)
36 3sde_A Paraspeckle component 1 99.9 1.5E-26 5.3E-31 210.2 16.5 153 3-177 20-178 (261)
37 3zzy_A Polypyrimidine tract-bi 99.9 3.5E-22 1.2E-26 157.3 11.9 106 96-201 24-129 (130)
38 2i2y_A Fusion protein consists 99.9 1.2E-21 4E-26 162.3 11.4 135 291-439 13-148 (150)
39 2kn4_A Immunoglobulin G-bindin 99.9 3.1E-21 1.1E-25 161.3 12.4 138 291-443 13-154 (158)
40 3r27_A HnRNP L, heterogeneous 99.9 2.5E-21 8.5E-26 145.2 10.3 82 2-83 18-99 (100)
41 2e5i_A Heterogeneous nuclear r 99.8 3.7E-20 1.3E-24 145.4 14.2 102 96-198 21-122 (124)
42 4f25_A Polyadenylate-binding p 99.8 8.8E-21 3E-25 149.1 9.8 107 3-116 3-113 (115)
43 2cq1_A PTB-like protein L; RRM 99.8 4.7E-20 1.6E-24 140.2 11.2 86 2-87 12-97 (101)
44 1sjq_A Polypyrimidine tract-bi 99.8 1.5E-20 5.3E-25 142.4 8.4 86 2-87 13-98 (105)
45 4f25_A Polyadenylate-binding p 99.8 3.4E-20 1.2E-24 145.7 10.6 105 253-378 5-112 (115)
46 3r27_A HnRNP L, heterogeneous 99.8 4.8E-20 1.6E-24 138.2 10.6 81 359-441 17-99 (100)
47 1x4d_A Matrin 3; structural ge 99.8 3.2E-20 1.1E-24 140.9 9.8 80 2-81 12-92 (102)
48 1wex_A Hypothetical protein (r 99.8 5.5E-20 1.9E-24 140.7 10.6 86 2-87 12-97 (104)
49 2ad9_A Polypyrimidine tract-bi 99.8 3.1E-20 1.1E-24 144.5 8.9 88 2-89 28-115 (119)
50 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-19 4.1E-24 138.1 11.2 79 361-439 17-99 (99)
51 1sjr_A Polypyrimidine tract-bi 99.8 1.6E-19 5.5E-24 147.6 11.5 106 96-202 42-148 (164)
52 2cq1_A PTB-like protein L; RRM 99.8 2.8E-19 9.5E-24 135.9 11.5 85 357-443 9-95 (101)
53 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-19 5.3E-24 136.9 8.9 83 361-445 14-98 (105)
54 2ad9_A Polypyrimidine tract-bi 99.8 2.8E-19 9.6E-24 139.1 9.9 85 359-445 27-113 (119)
55 2i2y_A Fusion protein consists 99.8 8.1E-19 2.8E-23 145.1 12.3 137 135-329 11-148 (150)
56 1x4f_A Matrin 3; structural ge 99.8 3.2E-19 1.1E-23 137.2 8.5 81 2-82 22-103 (112)
57 1x4d_A Matrin 3; structural ge 99.8 6E-19 2.1E-23 133.8 9.0 78 360-439 12-92 (102)
58 1wex_A Hypothetical protein (r 99.8 1.1E-18 3.8E-23 133.4 10.5 83 359-443 11-95 (104)
59 2wbr_A GW182, gawky, LD47780P; 99.8 5.4E-19 1.8E-23 127.2 7.4 77 2-80 4-80 (89)
60 3s8s_A Histone-lysine N-methyl 99.8 2E-18 7E-23 133.9 10.6 82 361-442 4-89 (110)
61 2lxi_A RNA-binding protein 10; 99.8 3.3E-19 1.1E-23 133.6 5.3 80 363-442 1-86 (91)
62 2kn4_A Immunoglobulin G-bindin 99.8 4.2E-18 1.4E-22 142.2 12.2 133 41-178 13-150 (158)
63 2lea_A Serine/arginine-rich sp 99.8 3.6E-19 1.2E-23 143.8 5.4 123 293-444 6-132 (135)
64 4fxv_A ELAV-like protein 1; RN 99.8 3.7E-18 1.3E-22 129.9 10.1 75 4-80 18-98 (99)
65 2wbr_A GW182, gawky, LD47780P; 99.8 3.3E-18 1.1E-22 123.1 8.8 76 362-439 6-81 (89)
66 3bs9_A Nucleolysin TIA-1 isofo 99.7 7.9E-18 2.7E-22 125.4 10.8 79 361-439 4-86 (87)
67 1whw_A Hypothetical protein ri 99.7 8.9E-18 3E-22 128.3 10.8 85 361-445 6-94 (99)
68 1x4f_A Matrin 3; structural ge 99.7 4.9E-18 1.7E-22 130.6 9.1 81 359-441 21-104 (112)
69 3lqv_A PRE-mRNA branch site pr 99.7 2.3E-18 7.8E-23 135.6 7.3 102 2-126 5-109 (115)
70 2x1f_A MRNA 3'-END-processing 99.7 9E-18 3.1E-22 127.5 10.1 82 362-443 1-86 (96)
71 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.5E-17 5.3E-22 128.0 11.5 83 361-443 13-97 (103)
72 2dgx_A KIAA0430 protein; RRM d 99.7 9.4E-18 3.2E-22 127.2 10.1 82 362-443 8-94 (96)
73 3md1_A Nuclear and cytoplasmic 99.7 1.6E-17 5.5E-22 122.5 10.9 77 364-440 2-82 (83)
74 2cq3_A RNA-binding protein 9; 99.7 2E-17 6.7E-22 127.4 11.8 84 361-444 13-98 (103)
75 4a8x_A RNA-binding protein wit 99.7 1.1E-17 3.8E-22 124.9 10.1 80 362-441 3-87 (88)
76 2cpf_A RNA binding motif prote 99.7 1.2E-17 4.2E-22 127.3 10.5 83 361-443 3-92 (98)
77 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.4E-17 4.8E-22 123.4 10.4 77 361-437 5-85 (85)
78 2d9p_A Polyadenylate-binding p 99.7 1.5E-17 5.2E-22 128.0 11.0 83 361-443 13-97 (103)
79 2dnz_A Probable RNA-binding pr 99.7 1.8E-17 6.1E-22 125.6 11.1 82 361-442 3-88 (95)
80 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.2E-17 4.2E-22 140.1 11.2 140 296-443 11-156 (165)
81 2dgo_A Cytotoxic granule-assoc 99.7 2.1E-17 7.4E-22 129.9 11.8 85 361-445 13-101 (115)
82 2do4_A Squamous cell carcinoma 99.7 2.7E-17 9.2E-22 125.9 11.7 81 361-441 15-98 (100)
83 2jrs_A RNA-binding protein 39; 99.7 2.6E-17 8.7E-22 127.5 11.7 82 359-440 22-107 (108)
84 2lxi_A RNA-binding protein 10; 99.7 2.2E-18 7.4E-23 129.1 5.3 77 5-82 1-84 (91)
85 2cpj_A Non-POU domain-containi 99.7 1.4E-17 5E-22 127.1 10.0 80 2-83 12-91 (99)
86 2cqc_A Arginine/serine-rich sp 99.7 2.2E-17 7.7E-22 125.1 11.0 79 360-438 12-94 (95)
87 2lkz_A RNA-binding protein 5; 99.7 4.2E-18 1.4E-22 127.9 6.8 75 364-438 10-94 (95)
88 1p27_B RNA-binding protein 8A; 99.7 2.5E-17 8.5E-22 127.6 11.4 81 361-441 21-105 (106)
89 2dgv_A HnRNP M, heterogeneous 99.7 1.9E-17 6.4E-22 124.7 10.3 82 361-442 6-89 (92)
90 2dnq_A RNA-binding protein 4B; 99.7 2.8E-17 9.6E-22 123.1 11.1 79 361-443 6-84 (90)
91 2dnh_A Bruno-like 5, RNA bindi 99.7 3.5E-17 1.2E-21 126.5 12.0 84 361-444 13-102 (105)
92 2cq0_A Eukaryotic translation 99.7 2.2E-17 7.4E-22 127.2 10.7 84 360-443 12-99 (103)
93 1why_A Hypothetical protein ri 99.7 1.8E-17 6.2E-22 126.0 9.9 78 361-440 15-94 (97)
94 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.8E-17 6.1E-22 122.8 9.5 77 1-79 3-85 (85)
95 2dgs_A DAZ-associated protein 99.7 3.2E-17 1.1E-21 125.2 11.1 83 361-444 8-94 (99)
96 3s8s_A Histone-lysine N-methyl 99.7 2.3E-17 7.9E-22 127.9 10.4 79 2-82 3-87 (110)
97 2e5j_A Methenyltetrahydrofolat 99.7 1.9E-17 6.5E-22 125.9 9.7 80 361-441 17-96 (97)
98 2jvr_A Nucleolar protein 3; RN 99.7 9.3E-18 3.2E-22 129.6 8.0 80 362-441 27-107 (111)
99 1x4g_A Nucleolysin TIAR; struc 99.7 2.2E-17 7.4E-22 128.5 9.8 84 360-445 22-105 (109)
100 2dnp_A RNA-binding protein 14; 99.7 2.4E-17 8.2E-22 123.5 9.6 80 361-444 7-86 (90)
101 2cpj_A Non-POU domain-containi 99.7 2.5E-17 8.4E-22 125.8 9.8 80 360-441 12-91 (99)
102 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.5E-17 5.2E-22 127.8 8.7 84 361-444 10-97 (102)
103 2err_A Ataxin-2-binding protei 99.7 1.7E-17 5.9E-22 128.9 9.0 80 361-440 27-108 (109)
104 1why_A Hypothetical protein ri 99.7 1.5E-17 5.3E-22 126.4 8.5 78 2-81 14-93 (97)
105 2cpz_A CUG triplet repeat RNA- 99.7 4.8E-17 1.6E-21 127.9 11.6 85 359-443 21-109 (115)
106 1x5s_A Cold-inducible RNA-bind 99.7 2.7E-17 9.4E-22 126.4 10.0 83 361-443 10-96 (102)
107 2e5h_A Zinc finger CCHC-type a 99.7 2.5E-17 8.4E-22 124.6 9.5 77 361-437 14-94 (94)
108 1whx_A Hypothetical protein ri 99.7 2.6E-17 8.8E-22 128.2 9.7 81 362-444 9-89 (111)
109 2hvz_A Splicing factor, argini 99.7 1.5E-17 5E-22 127.6 8.2 99 6-109 1-100 (101)
110 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.6E-17 5.6E-22 127.6 8.5 82 1-84 8-95 (102)
111 2x1f_A MRNA 3'-END-processing 99.7 2.7E-17 9.1E-22 124.8 9.5 79 4-84 1-85 (96)
112 2la6_A RNA-binding protein FUS 99.7 5.4E-17 1.8E-21 123.9 11.1 78 360-437 10-99 (99)
113 1x4g_A Nucleolysin TIAR; struc 99.7 3.2E-17 1.1E-21 127.5 10.0 80 3-84 23-102 (109)
114 2ywk_A Putative RNA-binding pr 99.7 4.3E-17 1.5E-21 123.5 10.3 78 361-438 14-94 (95)
115 1x5t_A Splicing factor 3B subu 99.7 2E-17 6.7E-22 125.7 8.4 83 361-443 3-90 (96)
116 3p5t_L Cleavage and polyadenyl 99.7 1E-17 3.5E-22 125.4 6.7 81 364-444 2-88 (90)
117 2cq3_A RNA-binding protein 9; 99.7 6.9E-17 2.4E-21 124.3 11.6 81 3-85 13-97 (103)
118 1x4h_A RNA-binding protein 28; 99.7 4.6E-17 1.6E-21 127.2 10.6 84 361-444 13-106 (111)
119 2xnq_A Nuclear polyadenylated 99.7 5.1E-17 1.7E-21 123.2 10.5 78 359-440 18-96 (97)
120 1x4a_A Splicing factor, argini 99.7 4.4E-17 1.5E-21 126.8 10.4 82 361-442 20-102 (109)
121 2a3j_A U1 small nuclear ribonu 99.7 3.7E-17 1.3E-21 129.6 10.0 83 360-442 26-113 (127)
122 2dhg_A TRNA selenocysteine ass 99.7 3.3E-17 1.1E-21 126.4 9.5 85 361-445 7-96 (104)
123 2ytc_A PRE-mRNA-splicing facto 99.7 2.8E-17 9.7E-22 121.7 8.8 75 3-79 10-85 (85)
124 2dgt_A RNA-binding protein 30; 99.7 5.9E-17 2E-21 121.8 10.6 78 361-442 8-85 (92)
125 2fy1_A RNA-binding motif prote 99.7 4.7E-17 1.6E-21 127.8 10.4 83 361-443 5-90 (116)
126 2dnm_A SRP46 splicing factor; 99.7 3E-17 1E-21 126.3 9.1 82 361-442 11-96 (103)
127 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.6E-17 1.2E-21 121.7 9.3 77 3-81 4-86 (87)
128 2dnq_A RNA-binding protein 4B; 99.7 5.4E-17 1.9E-21 121.5 10.2 78 2-83 5-82 (90)
129 3md1_A Nuclear and cytoplasmic 99.7 5.4E-17 1.9E-21 119.6 9.9 75 5-81 1-81 (83)
130 2jvo_A Nucleolar protein 3; nu 99.7 3.7E-17 1.3E-21 126.5 9.4 80 360-443 28-107 (108)
131 2dgu_A Heterogeneous nuclear r 99.7 4.8E-17 1.6E-21 125.1 10.0 80 361-444 9-88 (103)
132 2kvi_A Nuclear polyadenylated 99.7 3.6E-17 1.2E-21 124.0 9.1 80 360-443 7-87 (96)
133 2la4_A Nuclear and cytoplasmic 99.7 2.5E-17 8.6E-22 126.3 8.3 77 361-439 25-101 (101)
134 1x5t_A Splicing factor 3B subu 99.7 3.9E-17 1.3E-21 124.0 9.3 80 2-83 2-88 (96)
135 1oo0_B CG8781-PA, drosophila Y 99.7 4.4E-17 1.5E-21 127.1 9.8 82 361-442 24-109 (110)
136 1whw_A Hypothetical protein ri 99.7 5.1E-17 1.7E-21 124.1 9.9 81 2-84 5-91 (99)
137 1x5u_A Splicing factor 3B subu 99.7 4.6E-17 1.6E-21 125.8 9.8 83 361-443 13-99 (105)
138 3ns6_A Eukaryotic translation 99.7 2E-17 6.7E-22 126.4 7.5 80 362-441 5-95 (100)
139 2cph_A RNA binding motif prote 99.7 6E-17 2E-21 125.7 10.2 83 361-443 13-101 (107)
140 3lqv_A PRE-mRNA branch site pr 99.7 5.1E-17 1.7E-21 127.8 9.9 81 361-441 6-87 (115)
141 2do0_A HnRNP M, heterogeneous 99.7 1E-16 3.5E-21 125.8 11.6 83 360-442 12-97 (114)
142 2dnz_A Probable RNA-binding pr 99.7 7.4E-17 2.5E-21 122.2 10.4 79 2-82 2-86 (95)
143 2cq2_A Hypothetical protein LO 99.7 2.3E-17 7.8E-22 126.9 7.5 80 2-83 22-108 (114)
144 2lkz_A RNA-binding protein 5; 99.7 3E-17 1E-21 123.2 8.0 75 6-80 10-94 (95)
145 2cpi_A CCR4-NOT transcription 99.7 2.7E-17 9.2E-22 128.3 8.0 80 362-441 14-103 (111)
146 1x5s_A Cold-inducible RNA-bind 99.7 2.9E-17 9.9E-22 126.2 8.0 81 1-83 8-94 (102)
147 2cpf_A RNA binding motif prote 99.7 5.6E-17 1.9E-21 123.6 9.4 80 2-83 2-90 (98)
148 2ytc_A PRE-mRNA-splicing facto 99.7 4.7E-17 1.6E-21 120.5 8.6 75 361-437 10-85 (85)
149 3ulh_A THO complex subunit 4; 99.7 1.3E-16 4.3E-21 123.8 11.4 80 359-438 25-107 (107)
150 2cpd_A Apobec-1 stimulating pr 99.7 1.3E-16 4.3E-21 121.8 11.0 78 361-442 13-92 (99)
151 2kxn_B Transformer-2 protein h 99.7 4.6E-17 1.6E-21 130.2 9.0 82 359-440 42-127 (129)
152 1p1t_A Cleavage stimulation fa 99.7 4.5E-17 1.5E-21 125.7 8.4 82 362-443 7-92 (104)
153 2cqi_A Nucleolysin TIAR; RNA r 99.7 9.4E-17 3.2E-21 123.5 10.1 79 3-83 13-95 (103)
154 2div_A TRNA selenocysteine ass 99.7 5.9E-17 2E-21 123.7 8.8 80 361-440 7-95 (99)
155 1sjr_A Polypyrimidine tract-bi 99.7 1.1E-16 3.9E-21 130.8 10.9 78 364-441 47-126 (164)
156 2la4_A Nuclear and cytoplasmic 99.7 4.3E-17 1.5E-21 125.0 7.9 76 3-80 25-100 (101)
157 2dgs_A DAZ-associated protein 99.7 1.1E-16 3.9E-21 122.1 10.3 80 2-84 7-92 (99)
158 2dgp_A Bruno-like 4, RNA bindi 99.7 8.1E-17 2.8E-21 124.6 9.6 83 361-443 11-100 (106)
159 2cq2_A Hypothetical protein LO 99.7 4.1E-17 1.4E-21 125.5 7.7 79 359-439 21-106 (114)
160 2e44_A Insulin-like growth fac 99.7 7.8E-17 2.7E-21 122.3 9.3 80 362-441 14-94 (96)
161 1x4c_A Splicing factor, argini 99.7 1E-16 3.4E-21 124.4 10.0 77 362-441 14-95 (108)
162 1u6f_A Tcubp1, RNA-binding pro 99.7 1.8E-16 6.2E-21 129.2 11.8 84 360-443 39-126 (139)
163 2d9p_A Polyadenylate-binding p 99.7 8.9E-17 3E-21 123.7 9.3 80 3-84 13-96 (103)
164 1wi8_A EIF-4B, eukaryotic tran 99.7 8.8E-17 3E-21 123.9 9.1 82 361-444 13-99 (104)
165 2hvz_A Splicing factor, argini 99.7 5.7E-17 1.9E-21 124.3 8.0 78 364-442 1-78 (101)
166 2dng_A Eukaryotic translation 99.7 1.6E-16 5.5E-21 122.2 10.4 81 361-443 13-97 (103)
167 2dgt_A RNA-binding protein 30; 99.7 1.8E-16 6.3E-21 119.1 10.4 78 2-83 7-84 (92)
168 2diu_A KIAA0430 protein; struc 99.7 1.4E-16 4.7E-21 115.7 9.2 74 361-440 6-85 (96)
169 2cq0_A Eukaryotic translation 99.7 2.2E-16 7.6E-21 121.4 11.0 78 3-82 13-96 (103)
170 2kt5_A RNA and export factor-b 99.7 2.2E-16 7.6E-21 125.8 11.4 84 361-444 33-119 (124)
171 3n9u_C Cleavage and polyadenyl 99.7 8.7E-17 3E-21 132.8 9.3 82 362-443 54-141 (156)
172 1x4c_A Splicing factor, argini 99.7 2.8E-16 9.4E-21 121.9 11.6 76 4-82 14-94 (108)
173 1whx_A Hypothetical protein ri 99.7 5.9E-17 2E-21 126.1 7.8 77 4-82 9-85 (111)
174 2cph_A RNA binding motif prote 99.7 8.7E-17 3E-21 124.7 8.7 80 3-84 13-100 (107)
175 2dgo_A Cytotoxic granule-assoc 99.7 2.8E-16 9.6E-21 123.5 11.7 79 3-83 13-97 (115)
176 2cpx_A Hypothetical protein FL 99.7 8.4E-17 2.9E-21 126.6 8.7 84 360-443 22-109 (115)
177 1nu4_A U1A RNA binding domain; 99.7 5E-17 1.7E-21 123.7 7.1 82 361-442 6-92 (97)
178 3zzy_A Polypyrimidine tract-bi 99.7 2.8E-16 9.4E-21 123.7 11.4 76 365-441 30-108 (130)
179 2err_A Ataxin-2-binding protei 99.7 1.3E-16 4.5E-21 123.9 9.4 77 3-81 27-107 (109)
180 2ek1_A RNA-binding protein 12; 99.7 6.9E-17 2.4E-21 122.4 7.7 78 361-438 13-94 (95)
181 2dnm_A SRP46 splicing factor; 99.7 1.2E-16 4.2E-21 122.9 9.2 78 3-82 11-94 (103)
182 2khc_A Testis-specific RNP-typ 99.7 7E-17 2.4E-21 127.6 7.9 79 359-437 36-118 (118)
183 2ywk_A Putative RNA-binding pr 99.7 1.2E-16 4.1E-21 121.0 8.9 76 3-80 14-94 (95)
184 2cqh_A IGF-II mRNA-binding pro 99.7 7.4E-17 2.5E-21 121.6 7.7 80 361-443 6-87 (93)
185 2xnq_A Nuclear polyadenylated 99.7 2.1E-16 7.2E-21 119.8 10.1 76 2-81 19-95 (97)
186 2do4_A Squamous cell carcinoma 99.7 1.4E-16 4.8E-21 121.9 9.2 77 3-81 15-96 (100)
187 2dh8_A DAZ-associated protein 99.7 7.7E-17 2.6E-21 124.5 7.8 83 361-444 14-100 (105)
188 2cqd_A RNA-binding region cont 99.7 1.3E-16 4.5E-21 125.6 9.3 81 361-442 15-99 (116)
189 2dnh_A Bruno-like 5, RNA bindi 99.7 1.5E-16 5.2E-21 122.8 9.5 79 3-83 13-99 (105)
190 1x5p_A Negative elongation fac 99.7 3.2E-16 1.1E-20 119.0 11.1 81 361-445 13-93 (97)
191 2cpz_A CUG triplet repeat RNA- 99.7 1.6E-16 5.3E-21 124.9 9.6 79 3-83 23-107 (115)
192 2jvo_A Nucleolar protein 3; nu 99.7 2E-16 6.8E-21 122.4 10.0 75 3-81 29-103 (108)
193 2dgx_A KIAA0430 protein; RRM d 99.7 1.6E-16 5.4E-21 120.4 9.2 77 3-81 7-90 (96)
194 3ucg_A Polyadenylate-binding p 99.7 1.7E-16 5.7E-21 118.7 9.1 77 363-440 6-86 (89)
195 2cqp_A RNA-binding protein 12; 99.7 1.3E-16 4.4E-21 121.6 8.7 79 361-439 13-95 (98)
196 2fy1_A RNA-binding motif prote 99.7 2.1E-16 7.3E-21 124.0 10.1 80 3-84 5-89 (116)
197 2dgu_A Heterogeneous nuclear r 99.7 1.8E-16 6.1E-21 121.9 9.5 79 3-85 9-87 (103)
198 1s79_A Lupus LA protein; RRM, 99.7 1.4E-16 4.8E-21 121.8 8.8 76 362-438 10-88 (103)
199 3ex7_B RNA-binding protein 8A; 99.7 1.9E-16 6.4E-21 126.7 9.8 83 360-442 19-105 (126)
200 1x4e_A RNA binding motif, sing 99.7 3.7E-17 1.3E-21 121.1 5.1 77 361-437 3-83 (85)
201 2cpe_A RNA-binding protein EWS 99.7 1.8E-16 6.3E-21 124.1 9.3 83 361-443 13-107 (113)
202 2rs2_A Musashi-1, RNA-binding 99.7 1.4E-16 4.8E-21 123.6 8.4 83 361-444 23-109 (109)
203 1nu4_A U1A RNA binding domain; 99.7 1.7E-16 5.9E-21 120.6 8.8 79 2-82 5-90 (97)
204 2jrs_A RNA-binding protein 39; 99.7 1.6E-16 5.5E-21 123.0 8.7 78 2-81 23-106 (108)
205 2cqc_A Arginine/serine-rich sp 99.7 1.7E-16 6E-21 120.1 8.7 77 2-80 12-94 (95)
206 4a8x_A RNA-binding protein wit 99.7 2.5E-16 8.6E-21 117.4 9.4 77 3-81 2-85 (88)
207 2dnp_A RNA-binding protein 14; 99.7 1.8E-16 6.3E-21 118.6 8.6 76 2-81 6-81 (90)
208 2cqh_A IGF-II mRNA-binding pro 99.7 9.1E-17 3.1E-21 121.1 6.8 78 2-82 5-84 (93)
209 2cqg_A TDP-43, TAR DNA-binding 99.7 6.3E-16 2.2E-20 118.9 11.4 84 360-445 12-99 (103)
210 2e5i_A Heterogeneous nuclear r 99.7 6.9E-16 2.3E-20 121.1 11.7 79 361-441 21-104 (124)
211 1wg1_A KIAA1579 protein, homol 99.7 2.9E-16 1E-20 116.9 9.1 77 3-82 3-79 (88)
212 2nlw_A Eukaryotic translation 99.7 2.1E-16 7.1E-21 121.9 8.5 78 362-439 14-100 (105)
213 2kvi_A Nuclear polyadenylated 99.7 1.9E-16 6.5E-21 120.0 8.1 76 3-82 8-84 (96)
214 1x5o_A RNA binding motif, sing 99.7 6.4E-16 2.2E-20 121.2 11.4 80 361-440 23-113 (114)
215 1wi8_A EIF-4B, eukaryotic tran 99.7 5.5E-16 1.9E-20 119.4 10.8 77 3-83 13-96 (104)
216 1x5u_A Splicing factor 3B subu 99.7 2.6E-16 9E-21 121.5 9.0 79 3-83 13-97 (105)
217 1wf1_A RNA-binding protein RAL 99.7 2.2E-16 7.4E-21 123.0 8.5 76 361-440 25-101 (110)
218 2e5h_A Zinc finger CCHC-type a 99.7 1.1E-15 3.8E-20 115.4 12.2 77 250-327 13-94 (94)
219 1x4h_A RNA-binding protein 28; 99.7 2.5E-16 8.7E-21 123.0 8.9 79 3-83 13-103 (111)
220 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.3E-17 2.5E-21 123.3 5.6 78 361-440 17-99 (100)
221 1oo0_B CG8781-PA, drosophila Y 99.7 3.5E-16 1.2E-20 121.9 9.6 77 3-81 24-106 (110)
222 2krb_A Eukaryotic translation 99.7 8.7E-17 3E-21 117.8 5.7 72 363-434 1-81 (81)
223 1p27_B RNA-binding protein 8A; 99.7 2.3E-16 7.8E-21 122.1 8.4 77 3-81 21-103 (106)
224 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.6E-16 2.3E-20 128.4 11.8 81 361-441 37-121 (156)
225 2do0_A HnRNP M, heterogeneous 99.7 6.5E-16 2.2E-20 121.2 10.9 77 3-81 13-94 (114)
226 3ulh_A THO complex subunit 4; 99.7 4.4E-16 1.5E-20 120.7 9.7 75 3-79 27-106 (107)
227 3s7r_A Heterogeneous nuclear r 99.7 6.9E-16 2.4E-20 114.7 10.4 75 361-436 9-87 (87)
228 2cq4_A RNA binding motif prote 99.7 1.6E-16 5.3E-21 124.7 7.2 80 363-443 25-108 (114)
229 2div_A TRNA selenocysteine ass 99.7 1.8E-16 6.3E-21 121.0 7.5 78 2-81 6-94 (99)
230 2dhg_A TRNA selenocysteine ass 99.7 1.3E-16 4.6E-21 123.0 6.7 81 2-84 6-93 (104)
231 1wg1_A KIAA1579 protein, homol 99.7 2.9E-16 9.9E-21 116.9 8.2 76 362-440 4-79 (88)
232 2dgw_A Probable RNA-binding pr 99.7 7.6E-16 2.6E-20 115.5 10.5 77 361-439 8-87 (91)
233 2ki2_A SS-DNA binding protein 99.6 6.3E-17 2.1E-21 121.2 4.5 80 364-444 2-85 (90)
234 1x4a_A Splicing factor, argini 99.6 1.3E-15 4.4E-20 118.4 12.1 80 250-330 19-100 (109)
235 2cpd_A Apobec-1 stimulating pr 99.6 7E-16 2.4E-20 117.7 10.4 76 3-82 13-90 (99)
236 2dis_A Unnamed protein product 99.6 4.3E-16 1.5E-20 121.2 9.3 81 2-84 5-95 (109)
237 2jvr_A Nucleolar protein 3; RN 99.6 2.6E-16 8.9E-21 121.5 7.9 77 2-80 25-104 (111)
238 2la6_A RNA-binding protein FUS 99.6 3.5E-16 1.2E-20 119.3 8.6 76 2-79 10-99 (99)
239 1x4e_A RNA binding motif, sing 99.6 1.1E-16 3.6E-21 118.6 5.5 75 2-78 2-82 (85)
240 2dis_A Unnamed protein product 99.6 3.8E-16 1.3E-20 121.5 8.8 81 361-441 6-94 (109)
241 2fc9_A NCL protein; structure 99.6 2.2E-16 7.7E-21 120.9 7.4 79 361-442 13-94 (101)
242 2cpy_A RNA-binding protein 12; 99.6 1.6E-16 5.6E-21 124.4 6.6 82 361-443 13-98 (114)
243 1fjc_A Nucleolin RBD2, protein 99.6 2.3E-16 7.8E-21 119.7 7.2 80 361-441 14-93 (96)
244 3ucg_A Polyadenylate-binding p 99.6 5.2E-16 1.8E-20 115.9 8.8 74 4-80 5-84 (89)
245 2cpe_A RNA-binding protein EWS 99.6 6.4E-16 2.2E-20 121.0 9.7 79 3-83 13-105 (113)
246 2dng_A Eukaryotic translation 99.6 1.2E-15 4E-20 117.3 11.0 78 2-83 12-95 (103)
247 2khc_A Testis-specific RNP-typ 99.6 1.6E-15 5.4E-20 119.8 11.9 77 250-327 37-118 (118)
248 3egn_A RNA-binding protein 40; 99.6 5E-16 1.7E-20 127.1 9.3 85 360-444 42-135 (143)
249 2dgp_A Bruno-like 4, RNA bindi 99.6 4.3E-16 1.5E-20 120.5 8.3 80 2-83 10-98 (106)
250 1x5p_A Negative elongation fac 99.6 1.3E-15 4.5E-20 115.6 10.9 77 3-83 13-89 (97)
251 2cqp_A RNA-binding protein 12; 99.6 3.8E-16 1.3E-20 119.0 7.8 77 3-81 13-95 (98)
252 2ek1_A RNA-binding protein 12; 99.6 3.9E-16 1.3E-20 118.2 7.8 75 3-79 13-93 (95)
253 1wf1_A RNA-binding protein RAL 99.6 7.9E-16 2.7E-20 119.8 9.5 75 4-82 26-101 (110)
254 1s79_A Lupus LA protein; RRM, 99.6 2.8E-16 9.7E-21 120.1 6.8 75 3-80 9-88 (103)
255 1x4b_A Heterogeneous nuclear r 99.6 3.9E-16 1.3E-20 122.8 7.7 82 362-444 26-111 (116)
256 2mss_A Protein (musashi1); RNA 99.6 2.8E-16 9.7E-21 113.2 6.3 71 365-436 1-75 (75)
257 1p1t_A Cleavage stimulation fa 99.6 1.9E-16 6.6E-21 122.1 5.7 78 4-83 7-90 (104)
258 2db1_A Heterogeneous nuclear r 99.6 4.1E-16 1.4E-20 122.8 7.6 80 361-441 15-100 (118)
259 2rs2_A Musashi-1, RNA-binding 99.6 7.5E-16 2.6E-20 119.5 8.9 78 2-82 22-105 (109)
260 2hgl_A HNRPF protein, heteroge 99.6 4.3E-16 1.5E-20 125.0 7.7 81 361-442 42-128 (136)
261 2cpi_A CCR4-NOT transcription 99.6 6.2E-16 2.1E-20 120.5 8.4 77 4-82 14-102 (111)
262 2dgv_A HnRNP M, heterogeneous 99.6 1.6E-15 5.6E-20 113.9 10.5 80 250-330 5-87 (92)
263 3ex7_B RNA-binding protein 8A; 99.6 6.2E-16 2.1E-20 123.7 8.6 80 2-83 19-104 (126)
264 1u6f_A Tcubp1, RNA-binding pro 99.6 7.3E-16 2.5E-20 125.5 9.2 80 3-84 40-125 (139)
265 2lea_A Serine/arginine-rich sp 99.6 3.4E-16 1.2E-20 126.3 7.1 79 251-330 45-128 (135)
266 2hzc_A Splicing factor U2AF 65 99.6 4.9E-16 1.7E-20 115.5 7.4 73 2-77 3-86 (87)
267 3s7r_A Heterogeneous nuclear r 99.6 9.6E-16 3.3E-20 113.9 9.0 73 3-78 9-87 (87)
268 2fc9_A NCL protein; structure 99.6 1.2E-15 4.2E-20 116.8 9.8 77 2-83 12-93 (101)
269 2jwn_A Embryonic polyadenylate 99.6 7.9E-16 2.7E-20 122.7 9.0 79 362-441 35-117 (124)
270 2m2b_A RNA-binding protein 10; 99.6 2E-16 6.8E-21 127.3 5.6 80 361-441 21-110 (131)
271 2e5g_A U6 snRNA-specific termi 99.6 7E-16 2.4E-20 116.4 8.2 80 362-443 7-86 (94)
272 1wg5_A Heterogeneous nuclear r 99.6 9E-16 3.1E-20 118.0 8.9 82 361-443 13-98 (104)
273 3pgw_S U1-70K; protein-RNA com 99.6 1.9E-16 6.5E-21 152.9 6.0 82 361-442 100-185 (437)
274 3d2w_A TAR DNA-binding protein 99.6 1E-15 3.4E-20 113.9 8.5 77 361-442 9-87 (89)
275 2dh8_A DAZ-associated protein 99.6 5.9E-16 2E-20 119.5 7.4 78 3-83 14-97 (105)
276 2pe8_A Splicing factor 45; RRM 99.6 1.8E-15 6.1E-20 115.8 9.9 83 360-442 5-97 (105)
277 3p5t_L Cleavage and polyadenyl 99.6 2.8E-16 9.7E-21 117.5 5.1 75 6-82 2-84 (90)
278 2diu_A KIAA0430 protein; struc 99.6 1.3E-15 4.6E-20 110.5 8.4 76 2-83 5-86 (96)
279 3ns6_A Eukaryotic translation 99.6 3.1E-16 1.1E-20 119.7 5.3 76 4-81 5-93 (100)
280 1wel_A RNA-binding protein 12; 99.6 3E-16 1E-20 125.0 5.5 81 361-442 23-107 (124)
281 1uaw_A Mouse-musashi-1; RNP-ty 99.6 4.6E-16 1.6E-20 112.7 6.0 72 364-436 1-76 (77)
282 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4.9E-16 1.7E-20 118.6 6.3 75 3-81 17-98 (100)
283 2a3j_A U1 small nuclear ribonu 99.6 2.5E-15 8.5E-20 119.1 10.5 80 250-330 26-111 (127)
284 1wg5_A Heterogeneous nuclear r 99.6 1.5E-15 5E-20 116.8 9.0 80 3-85 13-98 (104)
285 2kt5_A RNA and export factor-b 99.6 1.9E-15 6.4E-20 120.4 9.9 79 3-83 33-116 (124)
286 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.3E-15 4.5E-20 124.3 9.2 77 360-436 60-140 (140)
287 1wez_A HnRNP H', FTP-3, hetero 99.6 1.2E-15 4.2E-20 116.5 8.4 78 361-440 13-93 (102)
288 2dgw_A Probable RNA-binding pr 99.6 2E-15 6.8E-20 113.2 9.2 75 3-81 8-87 (91)
289 1fj7_A Nucleolin RBD1, protein 99.6 3.2E-16 1.1E-20 120.1 4.9 80 361-442 15-98 (101)
290 3beg_B Splicing factor, argini 99.6 3.3E-16 1.1E-20 122.8 5.0 74 363-439 16-94 (115)
291 3d2w_A TAR DNA-binding protein 99.6 1.7E-15 5.9E-20 112.6 8.5 76 2-81 8-84 (89)
292 2db1_A Heterogeneous nuclear r 99.6 1.2E-15 4.1E-20 120.1 7.7 82 3-87 15-104 (118)
293 2e5j_A Methenyltetrahydrofolat 99.6 3.5E-15 1.2E-19 113.2 10.0 78 250-329 16-94 (97)
294 2bz2_A Negative elongation fac 99.6 2.7E-15 9.4E-20 118.3 9.7 79 361-443 37-115 (121)
295 2fc8_A NCL protein; structure 99.6 1.8E-15 6E-20 116.2 8.4 79 361-442 13-95 (102)
296 2cpy_A RNA-binding protein 12; 99.6 1.6E-15 5.4E-20 118.8 8.1 80 3-85 13-98 (114)
297 2cq4_A RNA binding motif prote 99.6 1.5E-15 5.2E-20 119.0 7.9 75 5-82 25-105 (114)
298 2kxn_B Transformer-2 protein h 99.6 3.1E-15 1E-19 119.6 9.7 79 250-329 43-126 (129)
299 1uaw_A Mouse-musashi-1; RNP-ty 99.6 8.7E-16 3E-20 111.3 5.8 70 6-78 1-76 (77)
300 2e5g_A U6 snRNA-specific termi 99.6 2.7E-15 9.3E-20 113.1 8.8 78 2-82 5-83 (94)
301 1x4b_A Heterogeneous nuclear r 99.6 2.5E-15 8.6E-20 118.2 8.9 77 4-83 26-108 (116)
302 1wf0_A TDP-43, TAR DNA-binding 99.6 2.9E-15 1E-19 111.5 8.7 78 2-83 2-80 (88)
303 2cpx_A Hypothetical protein FL 99.6 2E-15 6.9E-20 118.6 8.1 79 3-83 23-107 (115)
304 2f3j_A RNA and export factor b 99.6 3.4E-15 1.2E-19 126.1 10.1 83 361-443 86-171 (177)
305 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.1E-15 7.3E-20 123.0 8.5 74 3-78 61-140 (140)
306 2krb_A Eukaryotic translation 99.6 6.5E-16 2.2E-20 113.0 4.9 69 5-75 1-80 (81)
307 2cqg_A TDP-43, TAR DNA-binding 99.6 4.7E-15 1.6E-19 114.0 9.9 77 3-83 13-95 (103)
308 2lmi_A GRSF-1, G-rich sequence 99.6 5.4E-16 1.8E-20 120.0 4.4 81 361-442 9-95 (107)
309 3n9u_C Cleavage and polyadenyl 99.6 2.4E-15 8.2E-20 124.2 8.5 77 4-82 54-138 (156)
310 1h2v_Z 20 kDa nuclear CAP bind 99.6 4.4E-15 1.5E-19 123.4 10.2 78 3-82 37-120 (156)
311 2nlw_A Eukaryotic translation 99.6 1.8E-15 6.2E-20 116.6 7.2 75 4-80 14-99 (105)
312 3q2s_C Cleavage and polyadenyl 99.6 1.6E-15 5.5E-20 133.8 7.8 81 362-442 67-153 (229)
313 1x5o_A RNA binding motif, sing 99.6 3.6E-15 1.2E-19 116.9 9.0 77 3-81 23-112 (114)
314 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4E-15 1.4E-19 124.8 9.5 78 3-82 70-153 (165)
315 2jwn_A Embryonic polyadenylate 99.6 1.8E-15 6.2E-20 120.6 6.9 75 4-81 35-115 (124)
316 2hgl_A HNRPF protein, heteroge 99.6 1.7E-15 6E-20 121.4 6.8 79 3-84 42-128 (136)
317 1wez_A HnRNP H', FTP-3, hetero 99.6 4.6E-15 1.6E-19 113.3 8.8 76 3-82 13-93 (102)
318 2e44_A Insulin-like growth fac 99.6 2E-15 6.8E-20 114.5 6.7 76 4-81 14-92 (96)
319 2mss_A Protein (musashi1); RNA 99.6 1.2E-15 4.3E-20 109.8 5.3 69 7-78 1-75 (75)
320 2ki2_A SS-DNA binding protein 99.6 6.7E-16 2.3E-20 115.6 3.8 74 6-82 2-81 (90)
321 2dha_A FLJ20171 protein; RRM d 99.6 1.6E-15 5.5E-20 119.3 6.1 82 361-443 21-109 (123)
322 2lcw_A RNA-binding protein FUS 99.4 1.5E-16 5.1E-21 125.2 0.0 82 361-442 5-98 (116)
323 2pe8_A Splicing factor 45; RRM 99.6 6.2E-15 2.1E-19 112.8 9.0 82 2-85 5-98 (105)
324 2dnn_A RNA-binding protein 12; 99.6 3.5E-15 1.2E-19 114.9 7.6 76 363-440 16-94 (109)
325 2dit_A HIV TAT specific factor 99.6 6.8E-15 2.3E-19 114.7 9.3 81 360-440 12-103 (112)
326 2bz2_A Negative elongation fac 99.6 5.6E-15 1.9E-19 116.5 8.9 77 3-83 37-113 (121)
327 2cqd_A RNA-binding region cont 99.6 1.5E-14 5E-19 113.8 11.2 79 250-330 14-97 (116)
328 2hzc_A Splicing factor U2AF 65 99.6 4.9E-15 1.7E-19 110.1 8.0 72 361-435 4-86 (87)
329 1fj7_A Nucleolin RBD1, protein 99.6 1.6E-15 5.3E-20 116.2 4.8 76 3-82 15-96 (101)
330 2dnn_A RNA-binding protein 12; 99.6 4.7E-15 1.6E-19 114.2 7.2 77 5-85 16-97 (109)
331 1iqt_A AUF1, heterogeneous nuc 99.6 1.6E-15 5.5E-20 109.2 4.0 71 365-436 1-75 (75)
332 1wf0_A TDP-43, TAR DNA-binding 99.6 2.5E-15 8.4E-20 111.9 5.0 77 362-443 4-82 (88)
333 2lmi_A GRSF-1, G-rich sequence 99.6 2.3E-15 7.8E-20 116.4 5.0 81 3-86 9-97 (107)
334 3beg_B Splicing factor, argini 99.6 5.3E-15 1.8E-19 115.9 7.1 74 4-80 15-93 (115)
335 2xs2_A Deleted in azoospermia- 99.6 5.1E-15 1.7E-19 113.5 6.9 77 362-440 8-87 (102)
336 1fjc_A Nucleolin RBD2, protein 99.6 9.1E-15 3.1E-19 110.8 8.1 76 3-81 14-91 (96)
337 2hgm_A HNRPF protein, heteroge 99.6 3.7E-15 1.2E-19 117.5 6.0 81 361-443 40-125 (126)
338 2fc8_A NCL protein; structure 99.5 2E-14 6.8E-19 110.2 9.7 75 3-82 13-93 (102)
339 1wel_A RNA-binding protein 12; 99.5 2.5E-15 8.6E-20 119.6 4.8 77 4-83 24-106 (124)
340 3v4m_A Splicing factor U2AF 65 99.5 9.1E-15 3.1E-19 111.9 7.7 82 360-441 2-99 (105)
341 2lcw_A RNA-binding protein FUS 99.3 4.6E-16 1.6E-20 122.4 0.0 80 2-83 4-97 (116)
342 1iqt_A AUF1, heterogeneous nuc 99.5 3.2E-15 1.1E-19 107.7 4.3 69 7-78 1-75 (75)
343 3u1l_A PRE-mRNA-splicing facto 99.5 1.1E-14 3.7E-19 127.5 8.0 77 3-81 132-229 (240)
344 2hgm_A HNRPF protein, heteroge 99.5 9.2E-15 3.1E-19 115.2 6.4 77 3-83 40-123 (126)
345 3u1l_A PRE-mRNA-splicing facto 99.5 1.7E-14 5.7E-19 126.3 8.6 78 361-440 132-230 (240)
346 2f3j_A RNA and export factor b 99.5 1.8E-14 6.3E-19 121.6 8.5 78 3-82 86-168 (177)
347 2xs2_A Deleted in azoospermia- 99.5 1.2E-14 4.2E-19 111.4 6.7 74 4-81 8-86 (102)
348 2hgn_A Heterogeneous nuclear r 99.5 3E-15 1E-19 120.4 3.2 79 362-442 45-126 (139)
349 2dha_A FLJ20171 protein; RRM d 99.5 7.9E-15 2.7E-19 115.4 4.9 81 3-86 21-110 (123)
350 2m2b_A RNA-binding protein 10; 99.5 2.3E-14 8E-19 115.1 7.7 79 250-330 20-109 (131)
351 3egn_A RNA-binding protein 40; 99.5 2.4E-14 8.1E-19 117.1 7.5 77 3-81 43-130 (143)
352 2hgn_A Heterogeneous nuclear r 99.5 7.2E-15 2.5E-19 118.2 4.0 78 3-84 44-126 (139)
353 3q2s_C Cleavage and polyadenyl 99.5 3.5E-14 1.2E-18 125.2 7.7 76 4-81 67-150 (229)
354 3s6e_A RNA-binding protein 39; 99.5 7.9E-14 2.7E-18 107.9 8.6 80 361-440 5-94 (114)
355 3ue2_A Poly(U)-binding-splicin 99.5 1.3E-13 4.4E-18 107.5 9.5 79 361-439 18-109 (118)
356 3v4m_A Splicing factor U2AF 65 99.5 7.4E-14 2.5E-18 106.8 7.4 80 2-83 2-99 (105)
357 2dit_A HIV TAT specific factor 99.5 2.2E-13 7.7E-18 106.0 10.3 79 2-82 12-103 (112)
358 2dnl_A Cytoplasmic polyadenyla 99.5 6.3E-14 2.2E-18 109.6 6.6 75 361-438 6-87 (114)
359 2voo_A Lupus LA protein; RNA-b 99.5 5.3E-13 1.8E-17 114.4 12.9 77 363-440 109-188 (193)
360 2dnl_A Cytoplasmic polyadenyla 99.5 1E-13 3.6E-18 108.3 7.5 72 3-79 6-86 (114)
361 2j8a_A Histone-lysine N-methyl 99.5 1.2E-13 4E-18 106.3 7.3 75 364-438 3-95 (136)
362 3ue2_A Poly(U)-binding-splicin 99.4 2.7E-13 9.4E-18 105.6 8.2 79 3-83 18-111 (118)
363 3pgw_S U1-70K; protein-RNA com 99.4 2.3E-13 7.8E-18 131.4 9.5 78 3-82 100-183 (437)
364 2voo_A Lupus LA protein; RNA-b 99.4 4.8E-13 1.7E-17 114.7 8.8 73 5-80 109-186 (193)
365 2j8a_A Histone-lysine N-methyl 99.4 4.7E-13 1.6E-17 103.0 7.3 74 6-81 3-96 (136)
366 3tht_A Alkylated DNA repair pr 99.4 4.1E-13 1.4E-17 124.0 8.2 78 359-438 14-98 (345)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.1E-12 7.3E-17 97.3 10.1 76 364-442 11-93 (100)
368 3s6e_A RNA-binding protein 39; 99.4 1.2E-12 4.1E-17 101.2 8.4 84 2-87 4-99 (114)
369 3tht_A Alkylated DNA repair pr 99.4 7.9E-13 2.7E-17 122.1 8.1 77 2-80 15-98 (345)
370 1jmt_A Splicing factor U2AF 35 99.4 2.3E-13 8E-18 103.9 3.5 68 369-436 21-103 (104)
371 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.5E-11 5.3E-16 92.5 9.8 75 4-82 9-91 (100)
372 1jmt_A Splicing factor U2AF 35 99.3 9.9E-13 3.4E-17 100.4 2.6 64 14-79 24-104 (104)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 1.4E-11 4.7E-16 88.7 7.6 79 359-442 3-89 (91)
374 2dnr_A Synaptojanin-1; RRM dom 99.2 4.5E-11 1.5E-15 86.0 7.6 76 1-81 3-86 (91)
375 1owx_A Lupus LA protein, SS-B, 99.2 1E-10 3.4E-15 90.3 8.2 77 3-79 16-94 (121)
376 1owx_A Lupus LA protein, SS-B, 99.1 3.2E-10 1.1E-14 87.5 9.5 77 360-438 15-95 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 2.3E-10 7.7E-15 82.7 5.7 73 1-78 11-92 (95)
378 1ufw_A Synaptojanin 2; RNP dom 99.0 1.9E-10 6.6E-15 83.0 4.9 74 359-437 11-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.9 5.3E-09 1.8E-13 91.9 9.7 79 363-441 124-215 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.7 7.9E-08 2.7E-12 70.7 8.9 71 253-325 21-96 (117)
381 2l9w_A U4/U6 snRNA-associated- 98.7 5.6E-08 1.9E-12 71.5 7.7 71 362-434 20-95 (117)
382 3dxb_A Thioredoxin N-terminall 98.6 5E-08 1.7E-12 85.6 6.0 78 4-83 123-215 (222)
383 1wey_A Calcipressin 1; structu 98.2 4.4E-06 1.5E-10 61.5 6.7 76 363-440 5-85 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.2 1.4E-05 4.8E-10 58.4 9.1 69 5-78 8-81 (104)
385 1wey_A Calcipressin 1; structu 98.0 1.4E-05 4.9E-10 58.8 7.4 75 254-329 6-84 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.9 0.00012 4.2E-09 53.5 10.4 69 254-327 9-82 (104)
387 3ctr_A Poly(A)-specific ribonu 97.8 5.8E-05 2E-09 54.6 6.5 55 5-62 6-60 (101)
388 1whv_A Poly(A)-specific ribonu 97.7 6.6E-05 2.3E-09 54.1 6.4 55 5-62 16-70 (100)
389 1uw4_A UPF3X; nonsense mediate 97.7 0.00023 7.9E-09 51.5 8.6 59 6-64 2-68 (91)
390 1uw4_A UPF3X; nonsense mediate 97.4 0.0014 4.8E-08 47.4 9.9 72 255-327 3-86 (91)
391 1whv_A Poly(A)-specific ribonu 97.4 0.00034 1.2E-08 50.5 6.0 55 363-422 16-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 97.4 0.00074 2.5E-08 51.2 8.1 70 253-326 24-94 (119)
393 3ctr_A Poly(A)-specific ribonu 97.3 0.00032 1.1E-08 50.8 4.7 54 364-422 7-60 (101)
394 2l08_A Regulator of nonsense t 97.2 0.00066 2.3E-08 49.3 6.0 60 5-64 9-76 (97)
395 1wwh_A Nucleoporin 35, nucleop 97.1 0.0023 8E-08 48.4 8.5 64 363-430 24-87 (119)
396 3pq1_A Poly(A) RNA polymerase; 96.6 0.00098 3.4E-08 63.7 3.0 55 5-60 53-108 (464)
397 2l08_A Regulator of nonsense t 96.3 0.012 4.2E-07 42.7 6.7 73 254-327 10-94 (97)
398 3p3d_A Nucleoporin 53; structu 96.2 0.0056 1.9E-07 47.0 4.7 72 253-327 7-97 (132)
399 3pq1_A Poly(A) RNA polymerase; 96.2 0.0027 9.2E-08 60.7 3.7 55 363-420 53-108 (464)
400 3p3d_A Nucleoporin 53; structu 96.1 0.0044 1.5E-07 47.6 3.6 78 364-443 8-103 (132)
401 3d45_A Poly(A)-specific ribonu 92.1 0.28 9.5E-06 47.9 7.1 57 5-64 440-496 (507)
402 3d45_A Poly(A)-specific ribonu 90.5 0.65 2.2E-05 45.3 7.9 56 363-423 440-495 (507)
403 2g0c_A ATP-dependent RNA helic 75.1 9.2 0.00032 26.0 6.3 69 255-327 2-75 (76)
404 4eyt_A Telomerase associated p 74.4 19 0.00066 25.0 8.2 69 251-325 10-78 (129)
405 4eyt_A Telomerase associated p 68.2 27 0.00094 24.3 8.2 58 362-423 11-68 (129)
406 4e8u_A Putative uncharacterize 42.9 51 0.0018 26.5 5.8 51 364-414 13-75 (172)
407 2g0c_A ATP-dependent RNA helic 37.8 37 0.0013 22.8 3.8 58 16-78 12-74 (76)
408 2cu1_A Mitogen-activated prote 30.3 83 0.0029 22.6 4.5 65 10-77 21-86 (103)
409 4e8u_A Putative uncharacterize 29.2 89 0.003 25.1 5.2 45 7-51 14-72 (172)
410 3ts2_A Protein LIN-28 homolog 27.3 23 0.00077 27.9 1.4 30 19-50 1-30 (148)
411 3fry_A Probable copper-exporti 22.6 1.4E+02 0.0049 19.2 4.7 56 6-62 7-62 (73)
412 3lpe_A Putative transcription 22.6 1.7E+02 0.0058 20.5 5.2 33 281-313 40-72 (92)
413 1yjr_A Copper-transporting ATP 20.1 1.7E+02 0.0059 18.3 7.7 61 1-61 1-65 (75)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.7e-41 Score=312.43 Aligned_cols=236 Identities=20% Similarity=0.202 Sum_probs=209.0
Q ss_pred EEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCCcee
Q 013267 102 LVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQ 181 (446)
Q Consensus 102 ~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~~~~ 181 (446)
+|||+|||.++|+++|+++|+.|| |..+.+ .+++|| |||+|.+.++|..|++.|+|..+.++ +|.+.++..
T Consensus 24 ~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g~--~i~v~~~~~---- 94 (284)
T 3smz_A 24 KILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGT-AFVTLLNGEQAEAAINAFHQSRLRER--ELSVQLQPT---- 94 (284)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTE-EEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECCC----
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCE-EEEEeCCHHHHHHHHHHcCCCeeCCe--EEEEEecCC----
Confidence 499999999999999999999999 888776 778998 99999999999999999999999876 777776421
Q ss_pred eeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEEEeCC
Q 013267 182 VNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNL 261 (446)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 261 (446)
.++|||+||
T Consensus 95 -----------------------------------------------------------------------~~~l~v~nl 103 (284)
T 3smz_A 95 -----------------------------------------------------------------------DALLCVANL 103 (284)
T ss_dssp -----------------------------------------------------------------------SCEEEEESC
T ss_pred -----------------------------------------------------------------------CCEEEEcCC
Confidence 128999999
Q ss_pred CCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCCCCCC
Q 013267 262 NSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGAD 336 (446)
Q Consensus 262 ~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~~~~~ 336 (446)
|+ .+++++|+++|+.||.|..+.++.+. +|+|||+|.+.++|..|++.|||..+.|+.|.|.|+.+....
T Consensus 104 p~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~---- 178 (284)
T 3smz_A 104 PP-SLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT---- 178 (284)
T ss_dssp CT-TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC----
T ss_pred CC-cCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC----
Confidence 96 79999999999999999999988764 579999999999999999999999999999999998754211
Q ss_pred ccccccCCcccccccccccccccCCCccEEEEeCCCCCC-CHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHH
Q 013267 337 THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDV-TEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEE 412 (446)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~ 412 (446)
....++++|||+|||..+ |+++|+++|+.||.|.++.++.+. .+|+|||+|.+.+
T Consensus 179 ---------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 179 ---------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp ---------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred ---------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 012346899999999995 999999999999999999998652 2789999999999
Q ss_pred HHHHHHHHhCCCccCCCeEEEEeecCccccc
Q 013267 413 QATEALVCKHASSLGGSIIRISFSQLQSIRE 443 (446)
Q Consensus 413 ~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 443 (446)
+|.+|++.|||..++|++|+|+|++++..+.
T Consensus 238 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 238 MAEEAQQQADGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCSSSCHH
T ss_pred HHHHHHHHhCCCccCCeEEEEEEecCCCccc
Confidence 9999999999999999999999999987653
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.5e-41 Score=311.00 Aligned_cols=236 Identities=19% Similarity=0.285 Sum_probs=208.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~ 82 (446)
+++++|||+|||.++|+++|+++|+.|| |.+|.+.+.+|+|||+|.+.++|.+|++.+++. .+.|++|.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~i~v~~~~~~- 95 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQS--RLRERELSVQLQPTD- 95 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCCS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCC--eeCCeEEEEEecCCC-
Confidence 3689999999999999999999999999 999999888999999999999999999999998 899999999985431
Q ss_pred ccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHHHHHHH
Q 013267 83 LTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAVVARSS 157 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~~a~~~ 157 (446)
..|||+|||.++++++|+++|++||.|..+.+.. +++|| |||+|.+.++|.+|++.
T Consensus 96 ------------------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 96 ------------------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGY-GFAEYMKKDSAARAKSD 156 (284)
T ss_dssp ------------------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHH
T ss_pred ------------------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceE-EEEEECCHHHHHHHHHH
Confidence 2489999999999999999999999999988764 35688 99999999999999999
Q ss_pred hCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhh
Q 013267 158 LQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAA 237 (446)
Q Consensus 158 l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (446)
|+|..+.++ +|.+.++...... +
T Consensus 157 l~~~~~~g~--~i~v~~a~~~~~~-------------~------------------------------------------ 179 (284)
T 3smz_A 157 LLGKPLGPR--TLYVHWTDAGQLT-------------P------------------------------------------ 179 (284)
T ss_dssp HTTCEETTE--ECEEEECCGGGCC-------------T------------------------------------------
T ss_pred hCCCEeCCc--EEEEEECCCCCCC-------------c------------------------------------------
Confidence 999999776 8888887532100 0
Q ss_pred ccCCCCCCCCccCCCcceEEEeCCCCCCC-CHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhc
Q 013267 238 AFGGGLPPGITGTNDRCTVLVSNLNSDRI-DEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLK 312 (446)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~-~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~ln 312 (446)
...++++|||+|||+ .+ ++++|+++|+.||.|..+++..+. +|+|||+|.+.++|.+|+..||
T Consensus 180 -----------~~~~~~~l~v~nlp~-~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 180 -----------ALLHSRCLCVDRLPP-GFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp -----------TTTSCSEEEEECCCT-TCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred -----------ccCCccEEEEecCCc-ccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 012234899999995 65 999999999999999999998864 6799999999999999999999
Q ss_pred CCeeCCcEEEEEEecCCC
Q 013267 313 GALLFGKRLEVNFSKHPN 330 (446)
Q Consensus 313 g~~~~g~~l~v~~~~~~~ 330 (446)
|..+.|+.|+|.|+.+..
T Consensus 248 g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp TCEETTEECEEEECCSSS
T ss_pred CCccCCeEEEEEEecCCC
Confidence 999999999999998764
No 3
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=8.6e-41 Score=310.38 Aligned_cols=238 Identities=17% Similarity=0.220 Sum_probs=204.4
Q ss_pred cEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEec---CCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeee
Q 013267 99 RILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK---SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (446)
Q Consensus 99 ~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~---~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~ 175 (446)
....|||+|||.++|+++|+++|+.||.|..|.+... ++|| |||+|.+.++|.+|++ ++|..+.++ +|.+.++
T Consensus 40 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~-afV~f~~~~~A~~A~~-~~~~~~~g~--~i~v~~~ 115 (292)
T 2ghp_A 40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRF-ARIEFARYDGALAAIT-KTHKVVGQN--EIIVSHL 115 (292)
T ss_dssp --CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEE-EEEEESSHHHHHHHHT-TTTCEETTE--ECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEE-EEEEECCHHHHHHHHH-hCCcEeCCc--EEEEEEC
Confidence 3456999999999999999999999999999998762 5788 9999999999999995 899888776 6677664
Q ss_pred CCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcce
Q 013267 176 NLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCT 255 (446)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (446)
. +++
T Consensus 116 ~----------------------------------------------------------------------------~~~ 119 (292)
T 2ghp_A 116 T----------------------------------------------------------------------------ECT 119 (292)
T ss_dssp C----------------------------------------------------------------------------SCE
T ss_pred C----------------------------------------------------------------------------CCE
Confidence 2 128
Q ss_pred EEEeCCCCCCCCHHHHHHHhcccC-ceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCC
Q 013267 256 VLVSNLNSDRIDEDKLFNLFSLYG-NIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 330 (446)
Q Consensus 256 l~v~nl~~~~~~~~~l~~~F~~~G-~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~ 330 (446)
|||+|||+ .+++++|+++|+.|| .|..|.++.+. +|+|||+|.+.++|..|+..|||..+.|+.|.|.|+.+..
T Consensus 120 l~v~nlp~-~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 120 LWMTNFPP-SYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp EEEECCCT-TCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred EEEECCCC-CCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 99999996 799999999999999 99999987754 7899999999999999999999999999999999988653
Q ss_pred CCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEEeeC-----CceEE
Q 013267 331 ITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMN-----GKKQA 404 (446)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~v~~~~i~~~~-----~~g~~ 404 (446)
..... .....++++|||+|||.. +|+++|+++|++||.|.++.++.+. .+|+|
T Consensus 199 ~~~~~---------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~a 257 (292)
T 2ghp_A 199 KSKRT---------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCA 257 (292)
T ss_dssp -----------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEE
T ss_pred ccccc---------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEE
Confidence 11100 012245689999999999 9999999999999999999998543 38899
Q ss_pred EEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 405 LVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 405 fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
||+|.+.++|.+|+ .|||..++|++|.|+||+++
T Consensus 258 fV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 258 FMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999999999 99999999999999999986
No 4
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.7e-40 Score=307.01 Aligned_cols=237 Identities=18% Similarity=0.205 Sum_probs=202.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
+++++|||+|||.++|+++|+++|+.||+|.+|+++++ +|+|||+|.+.++|.+|++ +++. .++|++|.|.++
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~--~~~g~~i~v~~~ 115 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHK--VVGQNEIIVSHL 115 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTC--EETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCc--EeCCcEEEEEEC
Confidence 56899999999999999999999999999999999984 6999999999999999996 8877 899999999985
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCC-ceeEEEEEe----cCCceEEEEEecChhhHHH
Q 013267 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHG-FVEKIVTFQ----KSAGFQALIQYQLRPSAVV 153 (446)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G-~i~~i~~~~----~~~g~~afv~f~~~~~A~~ 153 (446)
.. .+|||+|||.++++++|+++|+.|| .|..+.+.. +++|| |||+|.+.++|.+
T Consensus 116 ~~--------------------~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~-afV~f~~~~~a~~ 174 (292)
T 2ghp_A 116 TE--------------------CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRF-AYIDVTSKEDARY 174 (292)
T ss_dssp CS--------------------CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCE-EEEECSSHHHHHH
T ss_pred CC--------------------CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceE-EEEEECCHHHHHH
Confidence 21 3489999999999999999999999 999988764 56888 9999999999999
Q ss_pred HHHHhCCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhh
Q 013267 154 ARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMANAA 233 (446)
Q Consensus 154 a~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (446)
|++.|+|..+.++ +|.|.++.+...... .
T Consensus 175 A~~~l~g~~~~g~--~l~v~~a~~~~~~~~-----------~-------------------------------------- 203 (292)
T 2ghp_A 175 CVEKLNGLKIEGY--TLVTKVSNPLEKSKR-----------T-------------------------------------- 203 (292)
T ss_dssp HHHHHTTCEETTE--ECEEEECCCC-------------------------------------------------------
T ss_pred HHHHhCCCEeCCc--EEEEEECCCCccccc-----------c--------------------------------------
Confidence 9999999999776 888888763321000 0
Q ss_pred hhhhccCCCCCCCCccCCCcceEEEeCCCCCC-CCHHHHHHHhcccCceEEEEEeeCC------CCeEEEEeCCHHHHHH
Q 013267 234 AIAAAFGGGLPPGITGTNDRCTVLVSNLNSDR-IDEDKLFNLFSLYGNIIRIKLLRNK------PDHALVQMGDGFQAEL 306 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~~l~~~F~~~G~v~~v~i~~~~------~g~afV~f~~~~~A~~ 306 (446)
.....++++|||+|||+ . +++++|+++|+.||.|..|+++.+. +|+|||+|.+.++|.+
T Consensus 204 -------------~~~~~~~~~l~v~nlp~-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~ 269 (292)
T 2ghp_A 204 -------------DSATLEGREIMIRNLST-ELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 269 (292)
T ss_dssp ----------------CCTTTEEEEEEECT-TTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHH
T ss_pred -------------cccCCCCceEEEECCCc-ccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHH
Confidence 00023345999999995 8 9999999999999999999998753 5799999999999999
Q ss_pred HHHHhcCCeeCCcEEEEEEecCC
Q 013267 307 AVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 307 A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
|+ .|||..|.|+.|+|.|++++
T Consensus 270 A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 270 AL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HG-GGTTEEETTEEEEEEECCCC
T ss_pred HH-HhcCCEECCcEEEEEEecCC
Confidence 99 99999999999999999865
No 5
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=4.1e-34 Score=249.18 Aligned_cols=185 Identities=26% Similarity=0.509 Sum_probs=153.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCC
Q 013267 251 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPN 330 (446)
Q Consensus 251 ~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~ 330 (446)
+++++|||+|||++.+++++|+++|+.||.|.+|+++.+++|+|||+|.+.++|..|++.|||..+.|+.|+|.|++...
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 34569999999944799999999999999999999998889999999999999999999999999999999999998655
Q ss_pred CCCCC---------CccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCe--eEEEEEeeC
Q 013267 331 ITQGA---------DTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI--VNTKLFEMN 399 (446)
Q Consensus 331 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v--~~~~i~~~~ 399 (446)
..... ..+++..++..++..+...+.....+|+++|||+|||.++|+++|+++|++||.| .+++++.++
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 32111 1234444444555444333323355788999999999999999999999999999 899998664
Q ss_pred C--ceEEEEEeCCHHHHHHHHHHhCCCccCCC----eEEEEe
Q 013267 400 G--KKQALVLFETEEQATEALVCKHASSLGGS----IIRISF 435 (446)
Q Consensus 400 ~--~g~~fV~f~~~~~A~~A~~~l~~~~~~g~----~l~v~~ 435 (446)
+ +|+|||+|.+.++|.+|+..|||..+.|+ ++.|-|
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 3 68999999999999999999999999986 455544
No 6
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=7.9e-33 Score=246.78 Aligned_cols=189 Identities=38% Similarity=0.640 Sum_probs=163.3
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
.+++++|||+|||+..+++++|+++|+.||.|..|++..+.+|+|||+|.+.++|.+|++.|||..+.|+.|.|.+++..
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 45677999999995269999999999999999999999988899999999999999999999999999999999999876
Q ss_pred CCC-------CCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEEeeCCc
Q 013267 330 NIT-------QGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG-SIVNTKLFEMNGK 401 (446)
Q Consensus 330 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~~ 401 (446)
... ......++......+...+...+.....+|+++|||+|||..+++++|+++|++|| .|.++++++ +++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~ 189 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDR 189 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS-SST
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE-CCC
Confidence 432 12233445454555555555555445667899999999999999999999999999 999999975 358
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCccC-CCeEEEEeecCc
Q 013267 402 KQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQLQ 439 (446)
Q Consensus 402 g~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~~ 439 (446)
|+|||+|.+.++|.+|++.|||..+. |+.|+|+|++++
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999999999999999 999999999986
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2e-32 Score=241.41 Aligned_cols=165 Identities=21% Similarity=0.261 Sum_probs=146.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEE
Q 013267 251 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 325 (446)
Q Consensus 251 ~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~ 325 (446)
.++++|||+|||+ .+++++|+++|+.||.|.+|+|+.+. +|+|||+|.+.++|.+|++.+|+..+.|+.|++.+
T Consensus 13 ~p~~tlfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHP-DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3566999999996 79999999999999999999998864 67999999999999999999999999999999998
Q ss_pred ecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC--ceE
Q 013267 326 SKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG--KKQ 403 (446)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~--~g~ 403 (446)
+..... . .....++|||+|||..+|+++|+++|+.||.|.+++|+.+++ +||
T Consensus 92 ~~~~~~--------------------~------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~ 145 (213)
T 4f02_A 92 SQRDPS--------------------L------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY 145 (213)
T ss_dssp CCCCTH--------------------H------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEE
T ss_pred cccccc--------------------c------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceE
Confidence 775420 0 001246899999999999999999999999999999987654 889
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcccc
Q 013267 404 ALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 442 (446)
Q Consensus 404 ~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 442 (446)
|||+|.+.++|.+|++.|||..|.|++|+|.|++++..+
T Consensus 146 ~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 146 GFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHHH
T ss_pred EEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCccc
Confidence 999999999999999999999999999999999987544
No 8
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=1.7e-32 Score=239.42 Aligned_cols=186 Identities=39% Similarity=0.649 Sum_probs=161.2
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCC
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT 332 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~ 332 (446)
+++|||+|||++.+++++|+++|+.||.|..|+++.+.+|+|||+|.+.++|..|++.|||..+.|+.|.|.|++.....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 45999999995269999999999999999999999888899999999999999999999999999999999999876432
Q ss_pred -------CCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEEeeCCceEE
Q 013267 333 -------QGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHG-SIVNTKLFEMNGKKQA 404 (446)
Q Consensus 333 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~~g~~ 404 (446)
......++..++..++..+...+.....+|+++|||+|||..+++++|+++|++|| .|.++.++++ ++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~a 161 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMA 161 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCE
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEE
Confidence 12233445555555555555555445667899999999999999999999999999 9999999753 58999
Q ss_pred EEEeCCHHHHHHHHHHhCCCccC-CCeEEEEeecCc
Q 013267 405 LVLFETEEQATEALVCKHASSLG-GSIIRISFSQLQ 439 (446)
Q Consensus 405 fV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~~ 439 (446)
||+|.+.++|.+|++.|||..++ |+.|+|+|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999986
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.5e-30 Score=220.88 Aligned_cols=156 Identities=20% Similarity=0.374 Sum_probs=141.7
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEe
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~ 326 (446)
++++|||+|||+ .+++++|+++|+.||.|.+++++.+. +|+|||+|.+.++|..|++.|+|..+.|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQ-DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCT-TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 456999999996 79999999999999999999988764 589999999999999999999999999999999998
Q ss_pred cCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----Cce
Q 013267 327 KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKK 402 (446)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g 402 (446)
.+.. ...++++|||+|||..+++++|+++|++||.|.++.+..++ .+|
T Consensus 81 ~~~~----------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g 132 (168)
T 1b7f_A 81 RPGG----------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG 132 (168)
T ss_dssp CCCS----------------------------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEE
T ss_pred CCCc----------------------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcce
Confidence 8652 11345799999999999999999999999999999998654 268
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccCC--CeEEEEee
Q 013267 403 QALVLFETEEQATEALVCKHASSLGG--SIIRISFS 436 (446)
Q Consensus 403 ~~fV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a 436 (446)
+|||+|.+.++|.+|++.|||..+.| ++|+|.||
T Consensus 133 ~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 133 VAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999999999987 99999996
No 10
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-30 Score=220.38 Aligned_cols=158 Identities=21% Similarity=0.327 Sum_probs=142.9
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 254 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 254 ~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
++|||+|||+ .+++++|+++|+.||.|.+++++.+. +|+|||+|.+.++|..|++.|||..+.|+.|+|.++.+.
T Consensus 1 R~l~V~nlp~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDK-AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEET-TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCC-cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 3899999996 79999999999999999999998765 579999999999999999999999999999999998755
Q ss_pred CCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEE
Q 013267 330 NITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQAL 405 (446)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~f 405 (446)
.. ....++++|||+|||..+++++|+++|++||.|.++.+..+. .+|+||
T Consensus 80 ~~--------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~af 133 (166)
T 3md3_A 80 QQ--------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGF 133 (166)
T ss_dssp CC--------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEE
T ss_pred CC--------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEE
Confidence 31 012356799999999999999999999999999999998652 278999
Q ss_pred EEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 406 VLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 406 V~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
|+|.+.++|.+|++.|||..++|++|+|+||++
T Consensus 134 V~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 134 VSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999999999999974
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=3.1e-30 Score=218.74 Aligned_cols=155 Identities=22% Similarity=0.373 Sum_probs=140.0
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
+++|||+|||+ .+++++|+++|+.||.|..++++.+. +|+|||+|.+.++|..|++.|||..+.|+.|+|.++.
T Consensus 2 ~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQ-NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCT-TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCC-CCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 46999999996 79999999999999999999998874 3799999999999999999999999999999999988
Q ss_pred CCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceE
Q 013267 328 HPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQ 403 (446)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~ 403 (446)
+.. ...++++|||+|||..+++++|+++|++||.|.++.+..++ .+|+
T Consensus 81 ~~~----------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~ 132 (167)
T 1fxl_A 81 PSS----------------------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV 132 (167)
T ss_dssp CCC----------------------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE
T ss_pred CCc----------------------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccce
Confidence 552 01235789999999999999999999999999999998653 2789
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCC--eEEEEee
Q 013267 404 ALVLFETEEQATEALVCKHASSLGGS--IIRISFS 436 (446)
Q Consensus 404 ~fV~f~~~~~A~~A~~~l~~~~~~g~--~l~v~~a 436 (446)
|||+|.+.++|.+|++.|||..+.|+ +|+|+||
T Consensus 133 afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 133 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999999999999996 4999986
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=2.9e-30 Score=228.63 Aligned_cols=174 Identities=18% Similarity=0.262 Sum_probs=146.9
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEe
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~ 326 (446)
++++|||+|||. .+++++|+++|+.||.|..|+++.+. +|+|||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 27 ~~~~l~V~nLp~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYY-ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCT-TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCC-CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 456999999996 79999999999999999999998753 789999999999999999999999999999999887
Q ss_pred cCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----Cce
Q 013267 327 KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKK 402 (446)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g 402 (446)
...... .+..........+.++|||+|||.++++++|+++|++||.|.++.+..++ .+|
T Consensus 106 ~~~~~~-----------------~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 168 (216)
T 2qfj_A 106 SNIGQA-----------------QPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKG 168 (216)
T ss_dssp SCCGGG-----------------HHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEE
T ss_pred CCcccc-----------------chhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCc
Confidence 654210 00000000122356899999999999999999999999999999998763 278
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCccccc
Q 013267 403 QALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIRE 443 (446)
Q Consensus 403 ~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 443 (446)
+|||+|.+.++|.+|++.|||..|+|+.|+|.|++++....
T Consensus 169 ~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 169 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred eEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 99999999999999999999999999999999999886543
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=7.8e-30 Score=216.28 Aligned_cols=156 Identities=17% Similarity=0.275 Sum_probs=140.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
++++|||+|||+++|+++|+++|++||.|.++.+++++ |+|||+|.+.++|.+|++.+++. .+.|++|+|.+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~ 78 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL--RLQTKTIKVSY 78 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCC--ccCCceEEEEe
Confidence 57899999999999999999999999999999999876 89999999999999999999998 89999999999
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEec-----CCceEEEEEecChhhHH
Q 013267 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK-----SAGFQALIQYQLRPSAV 152 (446)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~-----~~g~~afv~f~~~~~A~ 152 (446)
+.+..... ....|+|+|||.++++++|+++|++||.|..+.+... ++|| |||+|.+.++|.
T Consensus 79 ~~~~~~~~-------------~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~A~ 144 (167)
T 1fxl_A 79 ARPSSASI-------------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV-GFIRFDKRIEAE 144 (167)
T ss_dssp CCCCCGGG-------------TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHH
T ss_pred cCCCcccC-------------CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccce-EEEEeCCHHHHH
Confidence 87643321 1124899999999999999999999999999888753 4788 999999999999
Q ss_pred HHHHHhCCCCCCCCCceEEEeee
Q 013267 153 VARSSLQGRNIYDGCCQLDIQFS 175 (446)
Q Consensus 153 ~a~~~l~~~~~~~~~~~l~v~~~ 175 (446)
+|++.|+|..+.|+..+|+|.||
T Consensus 145 ~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 145 EAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCccCCCccceEEEeC
Confidence 99999999999998788898885
No 14
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.3e-30 Score=229.85 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=140.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.|+++|||+|||+++||++|+++|++||+|.+|++++++ |+|||+|.+.++|.+|++.+++. .+.|+.|++.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~--~~~g~~i~~~ 90 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD--VIKGKPVRIM 90 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhh--hcCCcccccc
Confidence 477899999999999999999999999999999999763 79999999999999999999998 8999999999
Q ss_pred ecccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe---cCCceEEEEEecChhhHHH
Q 013267 77 FSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ---KSAGFQALIQYQLRPSAVV 153 (446)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~---~~~g~~afv~f~~~~~A~~ 153 (446)
++........... ..|||+|||+++|+++|+++|++||.|..+.+.. .++|| |||+|.+.++|.+
T Consensus 91 ~~~~~~~~~~~~~-----------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~-~fV~f~~~~~a~~ 158 (213)
T 4f02_A 91 WSQRDPSLRKSGV-----------GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY-GFVHFETQEAAER 158 (213)
T ss_dssp ECCCCTHHHHHCT-----------TEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEE-EEEEESSHHHHHH
T ss_pred ccccccccccccc-----------ccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceE-EEEEeCCHHHHHH
Confidence 9765443322211 2489999999999999999999999999988874 45788 9999999999999
Q ss_pred HHHHhCCCCCCCCCceEEEeeeCCC
Q 013267 154 ARSSLQGRNIYDGCCQLDIQFSNLD 178 (446)
Q Consensus 154 a~~~l~~~~~~~~~~~l~v~~~~~~ 178 (446)
|++.|+|..+.|+ +|+|.++...
T Consensus 159 Ai~~lng~~~~g~--~i~V~~a~~~ 181 (213)
T 4f02_A 159 AIEKMNGMLLNDR--KVFVGRFKSR 181 (213)
T ss_dssp HHHHHTTCEETTE--ECEEEECCCH
T ss_pred HHHHhCCCEECCE--EEEEEEcCCC
Confidence 9999999999877 8899998754
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.9e-29 Score=232.75 Aligned_cols=187 Identities=20% Similarity=0.286 Sum_probs=147.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHH----HHhcccCceEEEEEeeCC--CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEE
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLF----NLFSLYGNIIRIKLLRNK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 323 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~----~~F~~~G~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v 323 (446)
..++++|||+|||. .+++++|+ ++|+.||.|..|++..+. +|+|||+|.+.++|..|++.|||..+.|+.|+|
T Consensus 6 ~~~~~~l~V~nlp~-~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLNE-KIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45677999999995 79999965 999999999999988644 789999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCccccccCC---------------------------------cc---------cc-------------
Q 013267 324 NFSKHPNITQGADTHEYMNSN---------------------------------LN---------RF------------- 348 (446)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~---------------------------------~~---------~~------------- 348 (446)
.|++............+.... .. +.
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 999776531100000000000 00 00
Q ss_pred c------cccc----------------------ccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC
Q 013267 349 N------RNAA----------------------KNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG 400 (446)
Q Consensus 349 ~------~~~~----------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~ 400 (446)
. .+.. .......+++++|||+|||..+++++|+++|++||.|.++++.+++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 0 0000 0001233467899999999999999999999999999999998543
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCCccC-CCeEEEEeecC
Q 013267 401 KKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQL 438 (446)
Q Consensus 401 ~g~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~ 438 (446)
+|+|||+|.+.++|.+|++.|||..+. |+.|+|+|||.
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 689999999999999999999999999 99999999974
No 16
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.4e-29 Score=220.67 Aligned_cols=169 Identities=12% Similarity=0.181 Sum_probs=140.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEE
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 324 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~ 324 (446)
...+++|||+|||+ .+++++|+++|+.||.|..|+++.+. +|+|||+|.+.++|..|++. +|..+.|+.|.|.
T Consensus 10 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 10 PEQLRKLFIGGLSF-ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CGGGGEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 45567999999996 79999999999999999999998864 57999999999999999985 9999999999999
Q ss_pred EecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----C
Q 013267 325 FSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----G 400 (446)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~ 400 (446)
++........ + ....+.++|||+|||.++|+++|+++|+.||.|.++.++.++ .
T Consensus 88 ~~~~~~~~~~----------------~------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~ 145 (196)
T 1l3k_A 88 RAVSREDSQR----------------P------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145 (196)
T ss_dssp ECCC---------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCE
T ss_pred cccCcccccc----------------c------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCc
Confidence 9875531100 0 012345899999999999999999999999999999998663 2
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCccccc
Q 013267 401 KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIRE 443 (446)
Q Consensus 401 ~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 443 (446)
+|||||+|.+.++|.+|++. +|..+.|+.|.|.|+.++....
T Consensus 146 ~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 146 RGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred cceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 78999999999999999976 8999999999999999887554
No 17
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=2.3e-29 Score=213.57 Aligned_cols=156 Identities=17% Similarity=0.295 Sum_probs=139.3
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
|+++|||+|||+++|+++|+++|++||+|.+|++++++ |+|||+|.+.++|.+|++.+++. .+.|++|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI--TVRNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCC--EeCCcEEEEEe
Confidence 68999999999999999999999999999999998763 79999999999999999999998 89999999999
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEec-----CCceEEEEEecChhhHH
Q 013267 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK-----SAGFQALIQYQLRPSAV 152 (446)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~-----~~g~~afv~f~~~~~A~ 152 (446)
+.+.... .....|+|+|||.++++++|+++|++||.|..+.+... ++|+ |||+|.+.++|.
T Consensus 80 ~~~~~~~-------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~ 145 (168)
T 1b7f_A 80 ARPGGES-------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGV-AFVRYNKREEAQ 145 (168)
T ss_dssp CCCCSST-------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHH
T ss_pred cCCCccc-------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceE-EEEEECCHHHHH
Confidence 8764321 11234899999999999999999999999999988753 3588 999999999999
Q ss_pred HHHHHhCCCCCCCCCceEEEeee
Q 013267 153 VARSSLQGRNIYDGCCQLDIQFS 175 (446)
Q Consensus 153 ~a~~~l~~~~~~~~~~~l~v~~~ 175 (446)
+|++.|+|..+.++..+|+|.|+
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999887778888875
No 18
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2.5e-29 Score=214.30 Aligned_cols=154 Identities=14% Similarity=0.282 Sum_probs=138.6
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhccc----C-------ceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcE
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLY----G-------NIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 320 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~----G-------~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~ 320 (446)
++++|||+|||+ .+++++|+++|+.| | .|.++.+..+ +|+|||+|.+.++|..|+ .+||..+.|+.
T Consensus 3 ~~~~l~V~nLp~-~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPF-GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp GGGEEEEESCCT-TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-TTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred cccEEEEcCCCc-ccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-CCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 456999999996 79999999999999 7 7888888766 899999999999999999 79999999999
Q ss_pred EEEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC-
Q 013267 321 LEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN- 399 (446)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~- 399 (446)
|+|.++.... ...++++|||+|||.++++++|+++|++||.|.++.+..++
T Consensus 80 i~v~~~~~~~----------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 131 (172)
T 2g4b_A 80 LKIRRPHDYQ----------------------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 131 (172)
T ss_dssp CEEECCSSCC----------------------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT
T ss_pred eeecCCcccC----------------------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC
Confidence 9999866432 11235799999999999999999999999999999998763
Q ss_pred -C--ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 400 -G--KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 400 -~--~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
+ +|+|||+|.+.++|.+|++.|||..++|++|.|+||
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 132 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 2 789999999999999999999999999999999997
No 19
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=5.3e-29 Score=217.37 Aligned_cols=179 Identities=13% Similarity=0.229 Sum_probs=146.0
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhccc----C-------ceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcE
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLY----G-------NIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKR 320 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~----G-------~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~ 320 (446)
.+++|||+|||+ .+++++|+++|+.| | .|.++.+..+ +|+|||+|.+.++|.+|+ .|||..+.|+.
T Consensus 3 ~~~~l~V~nLp~-~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~-~g~afV~F~~~~~A~~Al-~l~g~~~~g~~ 79 (198)
T 2yh0_A 3 MARRLYVGNIPF-GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (198)
T ss_dssp -CCEEEEESCCT-TCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT-TTEEEEEESCSHHHHHHG-GGTTEEETTEE
T ss_pred ceeEEEEcCCCC-CCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC-CCEEEEEeCCHHHHHHHH-HhcCCEEcCce
Confidence 356999999996 79999999999999 5 6777777655 899999999999999999 79999999999
Q ss_pred EEEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC-
Q 013267 321 LEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN- 399 (446)
Q Consensus 321 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~- 399 (446)
|+|.++.............. ...+... ......++++|||+|||..+++++|+++|++||.|.++.+..++
T Consensus 80 i~v~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 80 LKIRRPHDYQPLPGMSENPS-------VYVPGVV-STVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 151 (198)
T ss_dssp EEEECCCCCCCCCCSSSCSS-------CCCTTSS-CCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT
T ss_pred EEEeCCCCCCCCCCCcCCCc-------CCCCCCc-cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC
Confidence 99999876643221111000 0000000 01123467899999999999999999999999999999998663
Q ss_pred -C--ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCccc
Q 013267 400 -G--KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 441 (446)
Q Consensus 400 -~--~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 441 (446)
+ +|+|||+|.+.++|.+|++.|||..++|+.|+|+|++++..
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 2 78999999999999999999999999999999999998754
No 20
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=1e-28 Score=211.00 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=137.2
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-------CCeEEEEeCCHHHHHHHHHHhcCCeeC---CcEE
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-------PDHALVQMGDGFQAELAVHFLKGALLF---GKRL 321 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-------~g~afV~f~~~~~A~~A~~~lng~~~~---g~~l 321 (446)
.+++|||+|||+ .+++++|+++|+.||.|.+++++.+. +|+|||+|.+.++|..|++.|||..+. ++.+
T Consensus 2 ~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPR-TWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCT-TCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 356999999996 79999999999999999999998753 569999999999999999999998875 5677
Q ss_pred EEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC-
Q 013267 322 EVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG- 400 (446)
Q Consensus 322 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~- 400 (446)
.+.++..... ...++++|||+|||..+|+++|+++|++||.|.++.+..++.
T Consensus 81 ~~~~~~~~~~---------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g 133 (175)
T 3nmr_A 81 QMKPADSEKN---------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG 133 (175)
T ss_dssp EEEECGGGCC---------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTS
T ss_pred EEcccccccc---------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCC
Confidence 8777654320 112357999999999999999999999999999999986533
Q ss_pred --ceEEEEEeCCHHHHHHHHHHhCCCccC---CCeEEEEeec
Q 013267 401 --KKQALVLFETEEQATEALVCKHASSLG---GSIIRISFSQ 437 (446)
Q Consensus 401 --~g~~fV~f~~~~~A~~A~~~l~~~~~~---g~~l~v~~a~ 437 (446)
+|+|||+|.+.++|.+|++.|||..+. |++|+|.||.
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 134 LSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 789999999999999999999998777 4999999984
No 21
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=6.5e-30 Score=216.81 Aligned_cols=157 Identities=16% Similarity=0.299 Sum_probs=139.1
Q ss_pred CcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEe
Q 013267 252 DRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326 (446)
Q Consensus 252 ~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~ 326 (446)
++++|||+|||+ .+++++|+++|+.||.|.+|+++.+. +|+|||+|.+.++|..|++ ++..+.|+.|.+.++
T Consensus 2 ~~~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNW-DTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCT-TCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEEC
T ss_pred CCcEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccc
Confidence 456999999996 79999999999999999999998763 6899999999999999999 477899999999887
Q ss_pred cCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----Cce
Q 013267 327 KHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKK 402 (446)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g 402 (446)
.+.. ...++++|||+|||.++++++|+++|++||.|.++.+..++ .+|
T Consensus 79 ~~~~----------------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g 130 (167)
T 2cjk_A 79 IPRD----------------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRG 130 (167)
T ss_dssp CCHH----------------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSE
T ss_pred cchh----------------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccce
Confidence 6431 00134699999999999999999999999999999998553 378
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 403 QALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 403 ~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
+|||+|.+.++|.+|++ ++|..++|++|+|.||+++.
T Consensus 131 ~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 131 FGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp EEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCCC
T ss_pred EEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCCC
Confidence 99999999999999998 89999999999999999863
No 22
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=2.1e-29 Score=215.38 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=136.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEee----CCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEE
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLR----NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 325 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~----~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~ 325 (446)
..++++|||+|||. .+++++|+++|+.||.+..+.+.. ..+|+|||+|.+.++|.+|++ |||..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNP-NKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCT-TSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 45667999999996 799999999999999664422211 238999999999999999995 999999999999999
Q ss_pred ecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEE
Q 013267 326 SKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQAL 405 (446)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~f 405 (446)
+...... ...++++|||+|||..+|+++|+++|++||.|..+ ....+.+|+||
T Consensus 88 ~~~~~~~--------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~af 140 (175)
T 1fje_B 88 PKGRDSK--------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAY 140 (175)
T ss_dssp CCCSSCS--------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEE
T ss_pred CCCcccc--------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEE
Confidence 8765210 11245799999999999999999999999999877 22224488999
Q ss_pred EEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 406 VLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 406 V~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
|+|.+.++|.+|++.|||..++|+.|+|+||++++
T Consensus 141 V~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 141 IEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp EECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred EEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 99999999999999999999999999999999864
No 23
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-28 Score=208.14 Aligned_cols=155 Identities=21% Similarity=0.276 Sum_probs=138.1
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC-----CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK-----NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~-----~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
|+|||+|||.++|+++|+++|++||+|.+|++++++ |+|||+|.+.++|.+|+..+++. .+.|++|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGK--QIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCC--ccCCCeeEEEEcCC
Confidence 689999999999999999999999999999998764 89999999999999999999998 89999999999865
Q ss_pred ccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHHHHH
Q 013267 81 QELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAVVAR 155 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~~a~ 155 (446)
.... .......|||+|||.++++++|+++|++||.|..+.+.. +++|+ |||+|.+.++|.+|+
T Consensus 79 ~~~~-----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 79 SQQS-----------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGY-GFVSFTSQDDAQNAM 146 (166)
T ss_dssp CCCC-----------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHH
T ss_pred CCCC-----------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHH
Confidence 4321 123345699999999999999999999999999988873 45678 999999999999999
Q ss_pred HHhCCCCCCCCCceEEEeeeC
Q 013267 156 SSLQGRNIYDGCCQLDIQFSN 176 (446)
Q Consensus 156 ~~l~~~~~~~~~~~l~v~~~~ 176 (446)
+.|+|..+.|+ +|+|.|++
T Consensus 147 ~~l~g~~~~g~--~i~v~~a~ 165 (166)
T 3md3_A 147 DSMQGQDLNGR--PLRINWAA 165 (166)
T ss_dssp HHHTTCEETTE--ECEEEESC
T ss_pred HHhCCCccCCc--EEEEEecC
Confidence 99999999776 88998875
No 24
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.1e-28 Score=214.96 Aligned_cols=170 Identities=13% Similarity=0.214 Sum_probs=138.0
Q ss_pred CCceEEEEcCCC-CCCCHHHHHHhccCccceeEEEEEcc-CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 3 EPSKVIHVRNVG-HEISENDLLQLFQPFGVITKLVMLRA-KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 3 ~~s~~l~v~~lp-~~~te~~l~~~f~~~G~i~~~~i~~~-~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
.++++|||+||| .++|+++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|++.||+. .+.|++|+|.++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~--~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNN--FMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCC--EECCceEEEEEccC
Confidence 578999999999 79999999999999999999999986 699999999999999999999998 99999999999875
Q ss_pred ccccccc-------------cCC--CCCCC---------CCCcEEEEEEcCCCCCcCHHHHHHhhcCCCce--eEEEEEe
Q 013267 81 QELTTME-------------QNA--QGRGD---------EPNRILLVTIHHMLYPITVEVLHQVFSPHGFV--EKIVTFQ 134 (446)
Q Consensus 81 ~~~~~~~-------------~~~--~~~~~---------~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i--~~i~~~~ 134 (446)
....... ... ..+.. ...+...|||+|||+++|+++|+++|++||.| ..+.++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 4321100 000 00000 01122359999999999999999999999999 7888775
Q ss_pred ---cCCceEEEEEecChhhHHHHHHHhCCCCCCCC--CceEEEeee
Q 013267 135 ---KSAGFQALIQYQLRPSAVVARSSLQGRNIYDG--CCQLDIQFS 175 (446)
Q Consensus 135 ---~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~--~~~l~v~~~ 175 (446)
+++|+ |||+|.+.++|.+|++.|+|..+.+. ..++.|.++
T Consensus 160 ~~~~~~g~-gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 160 GKSERSSS-GLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSSSSEE-EEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCCceE-EEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 34588 99999999999999999999998775 345555553
No 25
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=6.7e-28 Score=219.19 Aligned_cols=159 Identities=20% Similarity=0.301 Sum_probs=142.6
Q ss_pred CCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEE
Q 013267 246 GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 325 (446)
Q Consensus 246 ~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~ 325 (446)
+.....++++|||+|||+ .+++++|+++|+.||.|..|.+..+ +|+|||+|.+.++|..|+..|||..+.|+.|.|.+
T Consensus 15 ~~~~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPT-DITEEDFKRLFERYGEPSEVFINRD-RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp TCCSSCGGGEEEEESCCT-TCCHHHHHHHTGGGCCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCCCEEEEECCCC-CCCHHHHHHHHHhcCCEEEEEEeCC-CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 333456677999999996 7999999999999999999999776 89999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC---ce
Q 013267 326 SKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KK 402 (446)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~---~g 402 (446)
+.+ +++|||+|||..+|+++|+++|+.||.|.++.++.+.. +|
T Consensus 93 a~~----------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g 138 (261)
T 3sde_A 93 ATH----------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 138 (261)
T ss_dssp CCC----------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEE
T ss_pred ccc----------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCc
Confidence 763 35899999999999999999999999999999986633 78
Q ss_pred EEEEEeCCHHHHHHHHHHhCC-CccC---CCeEEEEeecCcc
Q 013267 403 QALVLFETEEQATEALVCKHA-SSLG---GSIIRISFSQLQS 440 (446)
Q Consensus 403 ~~fV~f~~~~~A~~A~~~l~~-~~~~---g~~l~v~~a~~~~ 440 (446)
+|||+|.+.++|.+|++.||+ ..+. |++|.|.++++..
T Consensus 139 ~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 139 KGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred EEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 999999999999999999955 4444 9999999998764
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=2.3e-28 Score=217.92 Aligned_cols=170 Identities=24% Similarity=0.322 Sum_probs=143.8
Q ss_pred CCceEEEEcCCCC-CCCHHHHHHhccCccceeEEEEEccC-CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 3 EPSKVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAK-NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 3 ~~s~~l~v~~lp~-~~te~~l~~~f~~~G~i~~~~i~~~~-~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
+++++|||+|||+ ++|+++|+++|++||.|.+|++++++ |+|||+|.+.++|.+|++.+++. .+.|++|.|.++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~--~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGH--KLHGKPIRITLSKH 109 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTC--BCSSSBCEEECCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEEecC
Confidence 4789999999999 99999999999999999999999885 99999999999999999999998 89999999999875
Q ss_pred ccccccccCC-------------CCCC---------CCCCcEEEEEEcCCCCCcCHHHHHHhhcCCC-ceeEEEEEecCC
Q 013267 81 QELTTMEQNA-------------QGRG---------DEPNRILLVTIHHMLYPITVEVLHQVFSPHG-FVEKIVTFQKSA 137 (446)
Q Consensus 81 ~~~~~~~~~~-------------~~~~---------~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G-~i~~i~~~~~~~ 137 (446)
.......... ..+. .......+|||+|||.++++++|+++|++|| .|..+.++.+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 189 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR 189 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSST
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCC
Confidence 4221111000 0000 0012245689999999999999999999999 999999988789
Q ss_pred ceEEEEEecChhhHHHHHHHhCCCCCC-CCCceEEEeeeCC
Q 013267 138 GFQALIQYQLRPSAVVARSSLQGRNIY-DGCCQLDIQFSNL 177 (446)
Q Consensus 138 g~~afv~f~~~~~A~~a~~~l~~~~~~-~~~~~l~v~~~~~ 177 (446)
|+ |||+|.+.++|.+|++.|+|..+. ++ +|+|.|+++
T Consensus 190 g~-afV~f~~~~~A~~Ai~~l~g~~~~~g~--~l~v~~a~~ 227 (229)
T 2adc_A 190 KM-ALIQMGSVEEAVQALIDLHNHDLGENH--HLRVSFSKS 227 (229)
T ss_dssp TC-EEEEESSHHHHHHHHHHHTTCBSSSSC--BCEEEECSS
T ss_pred cE-EEEEECCHHHHHHHHHHHCCCccCCCC--eEEEEEecC
Confidence 98 999999999999999999999997 55 889999864
No 27
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.9e-28 Score=208.73 Aligned_cols=154 Identities=16% Similarity=0.264 Sum_probs=136.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCc----c-------ceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPF----G-------VITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGR 71 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~----G-------~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~ 71 (446)
+++++|||+|||+++|+++|+++|++| | .|.++.+.+++|+|||+|.+.++|.+|+ .+++. .+.|+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~--~~~g~ 78 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI--IFQGQ 78 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTC--EETTE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCc--EecCc
Confidence 478999999999999999999999999 6 8889999999999999999999999999 79988 89999
Q ss_pred EeEEEecccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEec-----CCceEEEEEec
Q 013267 72 NVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK-----SAGFQALIQYQ 146 (446)
Q Consensus 72 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~-----~~g~~afv~f~ 146 (446)
+|.|.++....... ....|||+|||.++++++|+++|++||.|..+.+... ++|| |||+|.
T Consensus 79 ~i~v~~~~~~~~~~-------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~ 144 (172)
T 2g4b_A 79 SLKIRRPHDYQPLP-------------GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY-AFCEYV 144 (172)
T ss_dssp ECEEECCSSCCCCT-------------TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE-EEEEES
T ss_pred eeeecCCcccCCCC-------------CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE-EEEEeC
Confidence 99999865532211 1223899999999999999999999999999988753 3688 999999
Q ss_pred ChhhHHHHHHHhCCCCCCCCCceEEEeee
Q 013267 147 LRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (446)
Q Consensus 147 ~~~~A~~a~~~l~~~~~~~~~~~l~v~~~ 175 (446)
+.++|.+|++.|+|..+.|+ +|+|.|+
T Consensus 145 ~~~~A~~A~~~l~g~~~~g~--~l~V~~A 171 (172)
T 2g4b_A 145 DINVTDQAIAGLNGMQLGDK--KLLVQRA 171 (172)
T ss_dssp STTHHHHHHHHHTTCEETTE--ECEEEEC
T ss_pred CHHHHHHHHHHcCCCEECCe--EEEEEeC
Confidence 99999999999999999877 7888876
No 28
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=7.5e-28 Score=205.69 Aligned_cols=157 Identities=18% Similarity=0.275 Sum_probs=134.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc--------CCeEEEEecChhHHHHHHHhhccCCceec---CeE
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA--------KNQALLQMQDVPSAINALQFYTNVQPTIR---GRN 72 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~--------~~~afV~F~~~~~A~~A~~~~~~~~~~~~---g~~ 72 (446)
.+++|||+|||+++|+++|+++|++||+|.+|+++++ +|+|||+|.+.++|.+|++.+++. .+. +++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~--~~~~~~~~~ 79 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM--KVLPGMHHP 79 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTT--CCCTTCSSC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCc--EEccCCccc
Confidence 5799999999999999999999999999999999854 479999999999999999999987 343 678
Q ss_pred eEEEecccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe----cCCceEEEEEecCh
Q 013267 73 VYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ----KSAGFQALIQYQLR 148 (446)
Q Consensus 73 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~----~~~g~~afv~f~~~ 148 (446)
+.+.++....... .....|||+|||.++|+++|+++|++||.|..+.+.. +++|| |||+|.+.
T Consensus 80 ~~~~~~~~~~~~~------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~-afV~f~~~ 146 (175)
T 3nmr_A 80 IQMKPADSEKNNA------------VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGC-AFVTFTTR 146 (175)
T ss_dssp CEEEECGGGCCSC------------GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE-EEEEESSH
T ss_pred eEEcccccccccc------------CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEE-EEEEECCH
Confidence 8888765543221 1223489999999999999999999999999998875 35678 99999999
Q ss_pred hhHHHHHHHhCCCCCCCC-CceEEEeee
Q 013267 149 PSAVVARSSLQGRNIYDG-CCQLDIQFS 175 (446)
Q Consensus 149 ~~A~~a~~~l~~~~~~~~-~~~l~v~~~ 175 (446)
++|.+|++.|+|..+.++ ..+|+|.|+
T Consensus 147 ~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 147 AMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 999999999999888764 468899886
No 29
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=4.4e-28 Score=211.43 Aligned_cols=169 Identities=24% Similarity=0.339 Sum_probs=142.5
Q ss_pred CceEEEEcCCCC-CCCHHHHHHhccCccceeEEEEEccC-CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 4 PSKVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAK-NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 4 ~s~~l~v~~lp~-~~te~~l~~~f~~~G~i~~~~i~~~~-~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
.+++|||+|||+ ++|+++|+++|++||.|.+|++++++ |+|||+|.+.++|.+|+..+++. .+.|++|+|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGH--KLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTC--CCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC--eecCeEEEEEEecCC
Confidence 368999999999 99999999999999999999999884 99999999999999999999998 799999999998754
Q ss_pred cccccccCCC-------------CC---------CCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCC-ceeEEEEEecCCc
Q 013267 82 ELTTMEQNAQ-------------GR---------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHG-FVEKIVTFQKSAG 138 (446)
Q Consensus 82 ~~~~~~~~~~-------------~~---------~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G-~i~~i~~~~~~~g 138 (446)
.......... .+ .....+..+|||+|||.++++++|+++|++|| .|..+.++..++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g 159 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 159 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSS
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCc
Confidence 3211110000 00 00112245699999999999999999999999 9999999887899
Q ss_pred eEEEEEecChhhHHHHHHHhCCCCCC-CCCceEEEeeeCC
Q 013267 139 FQALIQYQLRPSAVVARSSLQGRNIY-DGCCQLDIQFSNL 177 (446)
Q Consensus 139 ~~afv~f~~~~~A~~a~~~l~~~~~~-~~~~~l~v~~~~~ 177 (446)
+ |||+|.+.++|.+|++.|+|..+. ++ +|+|.|+++
T Consensus 160 ~-afV~f~~~~~A~~A~~~l~g~~~~~g~--~l~v~~a~~ 196 (198)
T 1qm9_A 160 M-ALIQMGSVEEAVQALIDLHNHDLGENH--HLRVSFSKS 196 (198)
T ss_dssp C-EEEECSSHHHHHHHHHHHTSSCCSSCC--SCCEEEECC
T ss_pred E-EEEEeCCHHHHHHHHHHhcCCccCCCC--eEEEEeecc
Confidence 8 999999999999999999999997 55 788888864
No 30
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=1.1e-26 Score=214.20 Aligned_cols=224 Identities=22% Similarity=0.279 Sum_probs=145.5
Q ss_pred EEEEEEcCCCCCcCHHHHH----HhhcCCCceeEEEEEe--cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEe
Q 013267 100 ILLVTIHHMLYPITVEVLH----QVFSPHGFVEKIVTFQ--KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQ 173 (446)
Q Consensus 100 ~~~v~v~nl~~~~t~~~l~----~~f~~~G~i~~i~~~~--~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~ 173 (446)
..+|||+|||.++++++|+ ++|++||.|.+|.+.+ +++|| |||+|.+.++|.+|++.|+|..+.++ +|+|.
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~ 85 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQ-AFVIFKEVSSATNALRSMQGFPFYDK--PMRIQ 85 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceE-EEEEECCHHHHHHHHHHhcCCeeCCc--EEEEE
Confidence 3459999999999999966 9999999999998865 67898 99999999999999999999999887 88999
Q ss_pred eeCCCceeeeeCCC----ccc---------CCcC---CCCCCCC--CCCCCCCCC-------CCCC-------CCCCCCC
Q 013267 174 FSNLDELQVNYNNE----RSR---------DFTN---PNLPAEQ--KGRPSQSGY-------SEAG-------GMYAPGA 221 (446)
Q Consensus 174 ~~~~~~~~~~~~~~----~~~---------~~~~---~~~~~~~--~~~~~~~~~-------~~~~-------~~~~~~~ 221 (446)
|+............ +.. +... ....... ......++. .... +..+..+
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 98765432110000 000 0000 0000000 000000000 0000 0000000
Q ss_pred CCCCcccchhhhh--------hhhccCCCCCC--CCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCC
Q 013267 222 RAVAFPQMANAAA--------IAAAFGGGLPP--GITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKP 291 (446)
Q Consensus 222 ~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~ 291 (446)
.+...++....+. .........++ .....+++++|||+|||. .+++++|+++|+.||.|..|++..+.+
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~-~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPE-ETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCC-cCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 0000000000000 00000000000 111245678999999995 799999999999999999999998877
Q ss_pred CeEEEEeCCHHHHHHHHHHhcCCeeC-CcEEEEEEec
Q 013267 292 DHALVQMGDGFQAELAVHFLKGALLF-GKRLEVNFSK 327 (446)
Q Consensus 292 g~afV~f~~~~~A~~A~~~lng~~~~-g~~l~v~~~~ 327 (446)
|+|||+|.+.++|.+|++.|||..|. |+.|+|.|++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999999999999999999999 9999999987
No 31
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=3.5e-28 Score=206.05 Aligned_cols=154 Identities=12% Similarity=0.217 Sum_probs=135.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||+++|+++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|++. .. .++|+.|.+.
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~--~~~g~~i~v~ 76 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QH--ILDGKVIDPK 76 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CC--EETTEECCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cc--ccCCeEcccc
Confidence 47899999999999999999999999999999999876 38999999999999999984 33 7999999999
Q ss_pred ecccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhH
Q 013267 77 FSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSA 151 (446)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A 151 (446)
++.+..... ....|||+|||.++++++|+++|++||.|..+.+.. +++|| |||+|.+.++|
T Consensus 77 ~~~~~~~~~-------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a 142 (167)
T 2cjk_A 77 RAIPRDEQD-------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGF-GFVTYDSADAV 142 (167)
T ss_dssp ECCCHHHHH-------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEE-EEEEESSHHHH
T ss_pred cccchhhcc-------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceE-EEEEECCHHHH
Confidence 876643322 223599999999999999999999999999988763 56788 99999999999
Q ss_pred HHHHHHhCCCCCCCCCceEEEeeeCC
Q 013267 152 VVARSSLQGRNIYDGCCQLDIQFSNL 177 (446)
Q Consensus 152 ~~a~~~l~~~~~~~~~~~l~v~~~~~ 177 (446)
.+|++ +++..+.|+ +|+|.|+.+
T Consensus 143 ~~A~~-~~~~~~~g~--~i~V~~a~p 165 (167)
T 2cjk_A 143 DRVCQ-NKFIDFKDR--KIEIKRAEP 165 (167)
T ss_dssp HHHHH-CSEECSSSS--CEEEEECCC
T ss_pred HHHHh-CCCEEeCCe--EEEEeecCC
Confidence 99998 899889887 889998864
No 32
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=3.8e-28 Score=214.93 Aligned_cols=167 Identities=20% Similarity=0.232 Sum_probs=138.6
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
++++|||+|||.++|+++|+++|+.||.|.+|+++++ +|+|||+|.+.++|.+|++.+++. .++|++|.|.+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~~ 104 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSV--MLGGRNIKVGR 104 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSC--CCC-CCCEEEC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCC--eeCCeeEEEec
Confidence 4689999999999999999999999999999999865 589999999999999999999998 89999999998
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhHH
Q 013267 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAV 152 (446)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~ 152 (446)
+.............. ........|||+|||.++++++|+++|++||.|..+.+.. +++|| |||+|.+.++|.
T Consensus 105 ~~~~~~~~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~ 181 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLA--EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGY-GFIEYEKAQSSQ 181 (216)
T ss_dssp CSCCGGGHHHHHHHH--HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHH
T ss_pred CCCccccchhhhhhh--cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCce-EEEEecCHHHHH
Confidence 765432211100000 0011224589999999999999999999999999998875 34788 999999999999
Q ss_pred HHHHHhCCCCCCCCCceEEEeeeCC
Q 013267 153 VARSSLQGRNIYDGCCQLDIQFSNL 177 (446)
Q Consensus 153 ~a~~~l~~~~~~~~~~~l~v~~~~~ 177 (446)
+|++.|+|..+.|+ +|+|.|+..
T Consensus 182 ~A~~~l~g~~~~g~--~i~V~~a~~ 204 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQ--YLRVGKAVT 204 (216)
T ss_dssp HHHHHHTTCBCSSS--BCEEEECSS
T ss_pred HHHHHccCCEeCCc--EEEEEEecC
Confidence 99999999999887 788888763
No 33
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=1.5e-27 Score=208.11 Aligned_cols=170 Identities=15% Similarity=0.234 Sum_probs=140.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCc----c-------ceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPF----G-------VITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGR 71 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~----G-------~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~ 71 (446)
.++++|||+|||+++|+++|+++|++| | .|.++.+.+++|+|||+|.+.++|.+|+ .+++. .+.|+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~--~~~g~ 78 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI--IFQGQ 78 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTE--EETTE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCC--EEcCc
Confidence 468999999999999999999999999 5 7888899999999999999999999999 78887 89999
Q ss_pred EeEEEecccccccccccCCC-------CCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEec-----CCce
Q 013267 72 NVYVQFSSHQELTTMEQNAQ-------GRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK-----SAGF 139 (446)
Q Consensus 72 ~i~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~-----~~g~ 139 (446)
+|.|.++............. ..........+|||+|||.++++++|+++|++||.|..+.+... ++||
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~ 158 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 158 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceE
Confidence 99999876543221110000 01111234567999999999999999999999999999988753 3788
Q ss_pred EEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCC
Q 013267 140 QALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLD 178 (446)
Q Consensus 140 ~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~ 178 (446)
|||+|.+.++|.+|++.|+|..+.|+ +|+|.++.+.
T Consensus 159 -afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~ 194 (198)
T 2yh0_A 159 -AFCEYVDINVTDQAIAGLNGMQLGDK--KLLVQRASVG 194 (198)
T ss_dssp -EEEEESSSSHHHHHHHHHTTCEETTE--ECEEEESCCC
T ss_pred -EEEEECCHHHHHHHHHHcCCCEECCE--EEEEEECCCC
Confidence 99999999999999999999999776 8899988643
No 34
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=2e-27 Score=206.96 Aligned_cols=162 Identities=15% Similarity=0.193 Sum_probs=133.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++. ++. .+.|+.|.|.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~--~~~g~~l~v~ 87 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPH--KVDGRVVEPK 87 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSC--EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCC--EECCEEeeee
Confidence 46789999999999999999999999999999999976 37999999999999999986 655 8999999999
Q ss_pred ecccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe-----cCCceEEEEEecChhhH
Q 013267 77 FSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSA 151 (446)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A 151 (446)
++.......... .......|||+|||.++|+++|+++|++||.|..+.+.. +++|| |||+|.+.++|
T Consensus 88 ~~~~~~~~~~~~-------~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~~~A 159 (196)
T 1l3k_A 88 RAVSREDSQRPG-------AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGF-AFVTFDDHDSV 159 (196)
T ss_dssp ECCC------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHH
T ss_pred cccCcccccccc-------cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccce-EEEEECCHHHH
Confidence 986643322111 112234599999999999999999999999999998874 35788 99999999999
Q ss_pred HHHHHHhCCCCCCCCCceEEEeeeCCC
Q 013267 152 VVARSSLQGRNIYDGCCQLDIQFSNLD 178 (446)
Q Consensus 152 ~~a~~~l~~~~~~~~~~~l~v~~~~~~ 178 (446)
.+|++. ++..+.|+ .|.|.++.+.
T Consensus 160 ~~A~~~-~~~~~~G~--~i~v~~a~~k 183 (196)
T 1l3k_A 160 DKIVIQ-KYHTVNGH--NCEVRKALSK 183 (196)
T ss_dssp HHHHHC-SCCEETTE--ECEEEECC--
T ss_pred HHHHHh-CCcEECCE--EEEEEecCCh
Confidence 999986 78888777 7888887644
No 35
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=4.3e-27 Score=200.93 Aligned_cols=158 Identities=13% Similarity=0.157 Sum_probs=133.7
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeE-----EEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITK-----LVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~-----~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.++++|||+|||.++|+++|+++|++||.+.. ...-+.+|+|||+|.+.++|.+|++ +++. .+.|++|.|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~--~~~g~~l~v~~ 87 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL--KVFGNEIKLEK 87 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGE--EETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCC--EeCCeEEEEec
Confidence 47899999999999999999999999986544 3334457999999999999999995 9988 89999999999
Q ss_pred cccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhhHHHHHHH
Q 013267 78 SSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSS 157 (446)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~ 157 (446)
+.+..... ......|||+|||.++++++|+++|++||.|..+....+++|| |||+|.+.++|.+|++.
T Consensus 88 ~~~~~~~~-----------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~-afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 88 PKGRDSKK-----------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGI-AYIEFKSEADAEKNLEE 155 (175)
T ss_dssp CCCSSCST-----------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSE-EEEECSSHHHHHHHHHH
T ss_pred CCCccccc-----------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceE-EEEEECCHHHHHHHHHH
Confidence 87643221 1223459999999999999999999999999877222367898 99999999999999999
Q ss_pred hCCCCCCCCCceEEEeeeCC
Q 013267 158 LQGRNIYDGCCQLDIQFSNL 177 (446)
Q Consensus 158 l~~~~~~~~~~~l~v~~~~~ 177 (446)
|+|..+.|+ +|+|.|+.+
T Consensus 156 l~g~~~~g~--~i~v~~a~~ 173 (175)
T 1fje_B 156 KQGAEIDGR--SVSLYYTGE 173 (175)
T ss_dssp HTEEEETTE--EEEEEECSS
T ss_pred hCCCEECCe--EEEEEecCC
Confidence 999999876 889999864
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=1.5e-26 Score=210.18 Aligned_cols=153 Identities=19% Similarity=0.298 Sum_probs=135.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~ 82 (446)
.++++|||+|||+++|+++|+++|++||.|.+|.+.+++|+|||+|.+.++|.+|+..+++. .+.|++|.|.++.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~v~~a~~~- 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGT--ILKSRPLRIRFATHG- 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC--EETTEECEEEECCCS-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCc--EECCceeEeeecccC-
Confidence 45689999999999999999999999999999999999999999999999999999999998 899999999997541
Q ss_pred ccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEe----cCCceEEEEEecChhhHHHHHHHh
Q 013267 83 LTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQ----KSAGFQALIQYQLRPSAVVARSSL 158 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~----~~~g~~afv~f~~~~~A~~a~~~l 158 (446)
..|||+|||..+|+++|+++|+.||.|..+.+.. +++|| |||+|.+.++|.+|++.|
T Consensus 97 ------------------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 97 ------------------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGK-GFVEFAAKPPARKALERC 157 (261)
T ss_dssp ------------------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEE-EEEEESSHHHHHHHHHHH
T ss_pred ------------------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcE-EEEEeCCHHHHHHHHHHh
Confidence 2489999999999999999999999999988874 35788 999999999999999999
Q ss_pred CC-CCCC-CCCceEEEeeeCC
Q 013267 159 QG-RNIY-DGCCQLDIQFSNL 177 (446)
Q Consensus 159 ~~-~~~~-~~~~~l~v~~~~~ 177 (446)
++ ..+. +...+|.|.++..
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCC
T ss_pred cCCeEEecCCCceEEEeeccc
Confidence 54 3333 1234788888764
No 37
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.88 E-value=3.5e-22 Score=157.34 Aligned_cols=106 Identities=48% Similarity=0.862 Sum_probs=99.9
Q ss_pred CCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeee
Q 013267 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (446)
Q Consensus 96 ~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~ 175 (446)
.++++++|||+||++++|+++|+++|++||.|.+|.++++++||+|||+|.+.++|..|++.|+|..+++++++|+|.|+
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46899999999999999999999999999999999999888898899999999999999999999999998889999999
Q ss_pred CCCceeeeeCCCcccCCcCCCCCCCC
Q 013267 176 NLDELQVNYNNERSRDFTNPNLPAEQ 201 (446)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (446)
++..++++++++++|||++|.+|...
T Consensus 104 k~~~l~v~~n~~~srDyt~~~lp~~~ 129 (130)
T 3zzy_A 104 KLTSLNVKYNNDKSRDYTRPDLPSGD 129 (130)
T ss_dssp SCSSCCCCCCSSSEEETTCTTCCSSC
T ss_pred CCCceeEEecCCCcccCCCCCCCCCC
Confidence 99999999999999999999987643
No 38
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=1.2e-21 Score=162.26 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=111.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHh-cCCeeCCcEEEEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEe
Q 013267 291 PDHALVQMGDGFQAELAVHFL-KGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLS 369 (446)
Q Consensus 291 ~g~afV~f~~~~~A~~A~~~l-ng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 369 (446)
+|+++|+|.+.++|.+|++.+ ||..+.| .+.+.++........... ............+.++|||+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~V~ 79 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH------------HHHHHMHRDSCPLDCKVYVG 79 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS------------SCCCCSCSSSSTTSCEEEEE
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc------------cccccccccCCCCCCEEEEe
Confidence 889999999999999999999 9999999 999998765321100000 00000011233467899999
Q ss_pred CCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 370 TLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 370 nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
|||.++|+++|+++|++||.|.++.++.+ .+|||||+|.+.++|.+|++.|||..+.|++|+|+|++++
T Consensus 80 nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 80 NLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999999999999864 5899999999999999999999999999999999999886
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=3.1e-21 Score=161.32 Aligned_cols=138 Identities=10% Similarity=0.097 Sum_probs=103.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeC
Q 013267 291 PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLST 370 (446)
Q Consensus 291 ~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 370 (446)
+|+|||+|.+.++|.+|++.+++....+..+.+......... ..............+.++|||+|
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~v~n 77 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV---------------TEGSHHHHHHMDVEGMTSLKVDN 77 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE---------------ECCCCCSSCCCCCCBCCEEEEES
T ss_pred cchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc---------------cccccccccccCCCCCCEEEEeC
Confidence 789999999999999999998864433333322211110000 00000000011224568999999
Q ss_pred CCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCccccc
Q 013267 371 LPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIRE 443 (446)
Q Consensus 371 lp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 443 (446)
||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++.|||..+.|++|+|.|++++..++
T Consensus 78 l~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 78 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 99999999999999999999999998653 38899999999999999999999999999999999999875543
No 40
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=145.22 Aligned_cols=82 Identities=34% Similarity=0.558 Sum_probs=77.6
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
.+||++|||+|||.++|+++|+++|++||.|.+|+++++||+|||+|.+.++|.+|++.+++.++.++|++|+|+||.++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 47999999999999999999999999999999999999999999999999999999999999877799999999999876
Q ss_pred cc
Q 013267 82 EL 83 (446)
Q Consensus 82 ~~ 83 (446)
++
T Consensus 98 ~l 99 (100)
T 3r27_A 98 KI 99 (100)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 41
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=3.7e-20 Score=145.43 Aligned_cols=102 Identities=40% Similarity=0.739 Sum_probs=95.6
Q ss_pred CCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEecCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeee
Q 013267 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFS 175 (446)
Q Consensus 96 ~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~ 175 (446)
.++++++|||+||++++++++|+++|++||.|.+|.++.+ .||+|||+|.+.++|..|++.|+|..+++++++|+|.|+
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4688999999999999999999999999999999999876 485599999999999999999999999998889999999
Q ss_pred CCCceeeeeCCCcccCCcCCCCC
Q 013267 176 NLDELQVNYNNERSRDFTNPNLP 198 (446)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~ 198 (446)
++..+.++++++++|||++|.+|
T Consensus 100 k~~~l~v~~n~~~srDyt~~~l~ 122 (124)
T 2e5i_A 100 RPTRLNVIRNDNDSWDYTKPYLG 122 (124)
T ss_dssp SCSCCCCSSCSSSEEESSCCCCC
T ss_pred cCCcceeecCCCCCCCCCCCCCC
Confidence 99999999999999999999876
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=8.8e-21 Score=149.11 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=71.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
..+++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.|++. .++|++|+|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~--~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM--LLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEC
Confidence 45789999999999999999999999999999999987 479999999999999999999998 899999999998
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHH
Q 013267 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEV 116 (446)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~ 116 (446)
.+......... ........|||+|||+++|++-
T Consensus 81 ~~~~~~~~~~~-----~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELG-----ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC---------------------------------
T ss_pred CCccccccccc-----cccCCCCceEeCCCCCCccccc
Confidence 76433222111 1122334589999999999863
No 43
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.7e-20 Score=140.20 Aligned_cols=86 Identities=37% Similarity=0.748 Sum_probs=78.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
.+|+++|||+|||.++|+++|+++|++||.|.+|.+++++|||||+|.+.++|.+|++.+++....++|++|+|+|+.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 46899999999999999999999999999999999999999999999999999999999876555899999999999887
Q ss_pred cccccc
Q 013267 82 ELTTME 87 (446)
Q Consensus 82 ~~~~~~ 87 (446)
......
T Consensus 92 ~~~~~~ 97 (101)
T 2cq1_A 92 ELKTSG 97 (101)
T ss_dssp SCCCCC
T ss_pred cCcCCC
Confidence 766543
No 44
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-20 Score=142.44 Aligned_cols=86 Identities=41% Similarity=0.762 Sum_probs=78.4
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
++++++|||+|||+++||+||+++|++||.|.+|++++++|||||+|.+.++|.+|++.+++....++|++|+|+|+.++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 46889999999999999999999999999999999999999999999999999999998876545899999999999887
Q ss_pred cccccc
Q 013267 82 ELTTME 87 (446)
Q Consensus 82 ~~~~~~ 87 (446)
......
T Consensus 93 ~~~~~~ 98 (105)
T 1sjq_A 93 ELKTDS 98 (105)
T ss_dssp SCCCTT
T ss_pred CCCccc
Confidence 665543
No 45
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=3.4e-20 Score=145.70 Aligned_cols=105 Identities=20% Similarity=0.296 Sum_probs=71.4
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC---CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK---PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
+++|||+|||+ .+++++|+++|+.||.|.+|+|+.+. +|||||+|.+.++|.+|++.|||..+.|+.|+|.++++.
T Consensus 5 ~~~lfV~nLp~-~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDK-SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCC-CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 34899999996 79999999999999999999998875 679999999999999999999999999999999998865
Q ss_pred CCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCCCCCHH
Q 013267 330 NITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEE 378 (446)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~ 378 (446)
...... .. .......+|||+|||.++|++
T Consensus 84 ~~~~~~---------------~~-----~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 84 KEREAE---------------LG-----ARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CC-----------------------------------------------
T ss_pred cccccc---------------cc-----cccCCCCceEeCCCCCCcccc
Confidence 321100 00 011234679999999999876
No 46
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=138.22 Aligned_cols=81 Identities=27% Similarity=0.368 Sum_probs=75.3
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCc--cCCCeEEEEee
Q 013267 359 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS--LGGSIIRISFS 436 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~--~~g~~l~v~~a 436 (446)
..+|+++|||+|||.++|+++|+++|++||.|.++.++ ++||+|||+|.+.++|.+|++.|++.. +.|++|+|+||
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~--~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM--PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE--cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 45689999999999999999999999999999999998 468999999999999999999999986 78999999999
Q ss_pred cCccc
Q 013267 437 QLQSI 441 (446)
Q Consensus 437 ~~~~~ 441 (446)
+++..
T Consensus 95 ~~k~l 99 (100)
T 3r27_A 95 TSQKI 99 (100)
T ss_dssp SCSCC
T ss_pred ccccc
Confidence 98764
No 47
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=140.86 Aligned_cols=80 Identities=30% Similarity=0.526 Sum_probs=75.5
Q ss_pred CCCceEEEEcCCCC-CCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 2 TEPSKVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 2 ~~~s~~l~v~~lp~-~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
+.|+++|||+|||. ++|++||+++|++||.|.+|+++++++||||+|.+.++|.+|++.|++....+.|++|+|+++..
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 56899999999999 99999999999999999999999999999999999999999999999876679999999999875
Q ss_pred c
Q 013267 81 Q 81 (446)
Q Consensus 81 ~ 81 (446)
.
T Consensus 92 ~ 92 (102)
T 1x4d_A 92 Y 92 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 48
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.5e-20 Score=140.74 Aligned_cols=86 Identities=28% Similarity=0.507 Sum_probs=79.2
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
.+|+++|||+|||.++||++|+++|++||.|.+|.+++++|+|||+|.+.++|.+|++.|++..+.++|++|+|+|+.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 46899999999999999999999999999999999999999999999999999999999988766799999999999887
Q ss_pred cccccc
Q 013267 82 ELTTME 87 (446)
Q Consensus 82 ~~~~~~ 87 (446)
....+.
T Consensus 92 ~~~~~~ 97 (104)
T 1wex_A 92 RITRPG 97 (104)
T ss_dssp SCCCSC
T ss_pred cccCCC
Confidence 665544
No 49
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-20 Score=144.55 Aligned_cols=88 Identities=40% Similarity=0.742 Sum_probs=79.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
.+|+++|||+|||+++||++|+++|++||.|.+|++++++|||||+|.+.++|.+|++.+++....+.|++|+|+|+.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 46899999999999999999999999999999999999999999999999999999999986444799999999999887
Q ss_pred cccccccC
Q 013267 82 ELTTMEQN 89 (446)
Q Consensus 82 ~~~~~~~~ 89 (446)
........
T Consensus 108 ~~~~~~~~ 115 (119)
T 2ad9_A 108 ELKTDSSP 115 (119)
T ss_dssp SCCCCCCT
T ss_pred CCCccccc
Confidence 77665444
No 50
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=138.12 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=73.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
..+++|||+|||.++|+++|+++|++||.|.+++++.++ .+|||||+|.+.++|++|++.|||..+.|++|+|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346799999999999999999999999999999998653 2789999999999999999999999999999999999
Q ss_pred cCc
Q 013267 437 QLQ 439 (446)
Q Consensus 437 ~~~ 439 (446)
+|.
T Consensus 97 kPS 99 (99)
T 4fxv_A 97 RPS 99 (99)
T ss_dssp CBC
T ss_pred eCC
Confidence 873
No 51
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.81 E-value=1.6e-19 Score=147.63 Aligned_cols=106 Identities=46% Similarity=0.811 Sum_probs=96.9
Q ss_pred CCCcEEEEEEcCCCCCcCHHHHHHhhcCCCceeEEEEEec-CCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEee
Q 013267 96 EPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQK-SAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQF 174 (446)
Q Consensus 96 ~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~i~~i~~~~~-~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~ 174 (446)
.++++++|||+||++++|+++|+++|++||.|.+|.++.+ ++|| |||+|.+.++|..|++.|+|..+++++++|+|.|
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgf-AFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQ-ALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEE-EEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCE-EEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3578999999999999999999999999999999999865 4677 9999999999999999999999998778999999
Q ss_pred eCCCceeeeeCCCcccCCcCCCCCCCCC
Q 013267 175 SNLDELQVNYNNERSRDFTNPNLPAEQK 202 (446)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (446)
++...+++++++++++||++|.+|....
T Consensus 121 Ak~~~l~vk~nn~rsrDyt~p~lp~~~~ 148 (164)
T 1sjr_A 121 SKLTSLNVKYNNDKSRDYTRPDLPSGDS 148 (164)
T ss_dssp CSSSSCCCCCCSSSEEESSCSCCCCCC-
T ss_pred ecCCcccccccCCCCccccCCCCCCCCC
Confidence 9999999999999999999998877663
No 52
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=135.93 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=77.4
Q ss_pred cccCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHh--CCCccCCCeEEEE
Q 013267 357 RYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK--HASSLGGSIIRIS 434 (446)
Q Consensus 357 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l--~~~~~~g~~l~v~ 434 (446)
+...+|+++|||+|||.++++++|+++|++||.|.++.+++ ++|||||+|.+.++|.+|++.| ++..+.|++|+|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 34567889999999999999999999999999999998874 5999999999999999999987 4678999999999
Q ss_pred eecCccccc
Q 013267 435 FSQLQSIRE 443 (446)
Q Consensus 435 ~a~~~~~~~ 443 (446)
||+++..+.
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 999988775
No 53
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=136.90 Aligned_cols=83 Identities=34% Similarity=0.519 Sum_probs=76.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCC--CccCCCeEEEEeecC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA--SSLGGSIIRISFSQL 438 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~--~~~~g~~l~v~~a~~ 438 (446)
+++++|||+|||.++|+++|+++|++||.|.++.+++ ++|||||+|.+.++|++|++.+++ ..+.|++|+|+||++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 4678999999999999999999999999999999985 589999999999999999998874 789999999999999
Q ss_pred ccccccC
Q 013267 439 QSIRENS 445 (446)
Q Consensus 439 ~~~~~~~ 445 (446)
+..+..+
T Consensus 92 ~~~~~~~ 98 (105)
T 1sjq_A 92 KELKTDS 98 (105)
T ss_dssp SSCCCTT
T ss_pred CCCCccc
Confidence 8877543
No 54
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.8e-19 Score=139.14 Aligned_cols=85 Identities=33% Similarity=0.501 Sum_probs=78.4
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCC--CccCCCeEEEEee
Q 013267 359 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA--SSLGGSIIRISFS 436 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~--~~~~g~~l~v~~a 436 (446)
..+|+++|||+|||.++|+++|+++|++||.|.++.+++ ++|||||+|.+.++|.+|++.+++ ..+.|++|+|+||
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 456789999999999999999999999999999999985 489999999999999999999984 6899999999999
Q ss_pred cCccccccC
Q 013267 437 QLQSIRENS 445 (446)
Q Consensus 437 ~~~~~~~~~ 445 (446)
+++..+..+
T Consensus 105 ~~k~~~~~~ 113 (119)
T 2ad9_A 105 NHKELKTDS 113 (119)
T ss_dssp SSSSCCCCC
T ss_pred cCCCCCccc
Confidence 999988754
No 55
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=8.1e-19 Score=145.09 Aligned_cols=137 Identities=20% Similarity=0.179 Sum_probs=107.8
Q ss_pred cCCceEEEEEecChhhHHHHHHHh-CCCCCCCCCceEEEeeeCCCceeeeeCCCcccCCcCCCCCCCCCCCCCCCCCCCC
Q 013267 135 KSAGFQALIQYQLRPSAVVARSSL-QGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEA 213 (446)
Q Consensus 135 ~~~g~~afv~f~~~~~A~~a~~~l-~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (446)
+-+|+ ++++|.+.++|++|++.+ +|..+.| ++.+.++............ . ..
T Consensus 11 ~l~G~-~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~---~-----~~--------------- 63 (150)
T 2i2y_A 11 TLKGE-TTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHH---H-----HH--------------- 63 (150)
T ss_dssp SSCEE-EEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSS---C-----CC---------------
T ss_pred ccccc-ceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCcccccccccc---c-----cc---------------
Confidence 55786 999999999999999999 8988876 6777776532211100000 0 00
Q ss_pred CCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCccCCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCe
Q 013267 214 GGMYAPGARAVAFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDH 293 (446)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~ 293 (446)
........++++|||+|||+ .+++++|+++|+.||.|..|+++.+.+|+
T Consensus 64 ------------------------------~~~~~~~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 112 (150)
T 2i2y_A 64 ------------------------------HMHRDSCPLDCKVYVGNLGN-NGNKTELERAFGYYGPLRSVWVARNPPGF 112 (150)
T ss_dssp ------------------------------CSCSSSSTTSCEEEEESCCS-CCSCHHHHHHHHHHSCEEEEEECSSSCSE
T ss_pred ------------------------------cccccCCCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCEEEEEEeeCCCcE
Confidence 00001133456999999996 79999999999999999999999888999
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 294 ALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 294 afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
|||+|.+.++|..|++.|||..+.|+.|+|.|+++.
T Consensus 113 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 113 AFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp EEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999999999999999998865
No 56
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.2e-19 Score=137.22 Aligned_cols=81 Identities=28% Similarity=0.494 Sum_probs=75.2
Q ss_pred CCCceEEEEcCCCCC-CCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 2 TEPSKVIHVRNVGHE-ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~-~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
..|+++|||+|||.+ +|++||+++|++||.|.+|++++++|||||+|.+.++|.+|++.|++....+.|++|+|+++..
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 468999999999998 9999999999999999999999999999999999999999999998765579999999999876
Q ss_pred cc
Q 013267 81 QE 82 (446)
Q Consensus 81 ~~ 82 (446)
..
T Consensus 102 ~~ 103 (112)
T 1x4f_A 102 YK 103 (112)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 57
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6e-19 Score=133.82 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=71.8
Q ss_pred CCCccEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCC--ccCCCeEEEEee
Q 013267 360 CSPTKMIHLSTLPQ-DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHAS--SLGGSIIRISFS 436 (446)
Q Consensus 360 ~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~~a 436 (446)
..|+++|||+|||. ++|++||+++|++||.|.++.+++ ++|||||+|.+.++|.+|++.||+. .+.|++|+|+||
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 45789999999999 999999999999999999999984 5799999999999999999999875 489999999999
Q ss_pred cCc
Q 013267 437 QLQ 439 (446)
Q Consensus 437 ~~~ 439 (446)
+.+
T Consensus 90 ~~~ 92 (102)
T 1x4d_A 90 QKY 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 953
No 58
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=133.45 Aligned_cols=83 Identities=27% Similarity=0.370 Sum_probs=75.3
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCC--ccCCCeEEEEee
Q 013267 359 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHAS--SLGGSIIRISFS 436 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~~a 436 (446)
..+|+++|||+|||.++++++|+++|++||.|.++.+++ ++|||||+|.+.++|.+|++.|++. .+.|++|+|+|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 446789999999999999999999999999999999874 5899999999999999999998765 489999999999
Q ss_pred cCccccc
Q 013267 437 QLQSIRE 443 (446)
Q Consensus 437 ~~~~~~~ 443 (446)
+++..+.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wex_A 89 TSKRITR 95 (104)
T ss_dssp SSSSCCC
T ss_pred cCccccC
Confidence 9887653
No 59
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=5.4e-19 Score=127.24 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=73.4
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
+..|..|+|+||++.+||++|+++|.+||+|.++.+...+|||||+|.+.++|.+|++.||+. .+.|++|+|+++..
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~--~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNC--VLANTTIFAESPSE 80 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTE--EETTEEEEEECCCH
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCC--EECCcEEEEEECCH
Confidence 457889999999999999999999999999999999999999999999999999999999998 99999999999743
No 60
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=133.87 Aligned_cols=82 Identities=22% Similarity=0.259 Sum_probs=75.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
+|.++|||+|||.++++++|+++|++||.|.+++++.++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 567899999999999999999999999999999998653 3889999999999999999999999999999999999
Q ss_pred cCcccc
Q 013267 437 QLQSIR 442 (446)
Q Consensus 437 ~~~~~~ 442 (446)
+....+
T Consensus 84 ~~~~~~ 89 (110)
T 3s8s_A 84 IKGQQR 89 (110)
T ss_dssp STTHHH
T ss_pred CCCcHH
Confidence 876544
No 61
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-19 Score=133.61 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=71.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhC-CCccCCCeEEEEee
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHG-SIVNTKLFEMN----GKKQALVLFETEEQATEALVCKH-ASSLGGSIIRISFS 436 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~-~~~~~g~~l~v~~a 436 (446)
|++|||+|||.++|+++|+++|++|| .|.+++++.++ .+|||||+|.+.++|++|++.++ +..++|++|+|.||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 89999998553 38899999999999999999874 56799999999999
Q ss_pred cCcccc
Q 013267 437 QLQSIR 442 (446)
Q Consensus 437 ~~~~~~ 442 (446)
+++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987654
No 62
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=4.2e-18 Score=142.21 Aligned_cols=133 Identities=17% Similarity=0.257 Sum_probs=96.6
Q ss_pred CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHh
Q 013267 41 KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQV 120 (446)
Q Consensus 41 ~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~ 120 (446)
+|+|||+|.+.++|++|+..+++.. .+.|. ..+.-.........................|||+|||+++++++|+++
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDN-GVDGE-WTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHH-TCCCE-EEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhcccC-CCCCc-ccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 4999999999999999999877541 12332 222211111111111111111112234456999999999999999999
Q ss_pred hcCCCceeEEEEEe-----cCCceEEEEEecChhhHHHHHHHhCCCCCCCCCceEEEeeeCCC
Q 013267 121 FSPHGFVEKIVTFQ-----KSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLD 178 (446)
Q Consensus 121 f~~~G~i~~i~~~~-----~~~g~~afv~f~~~~~A~~a~~~l~~~~~~~~~~~l~v~~~~~~ 178 (446)
|++||.|..+.+.. +++|| |||+|.+.++|.+|++.|+|..+.++ +|+|.++...
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~ 150 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGF-AFVRFHDKRDAEDAMDAMDGAVLDGR--ELRVQMARYG 150 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCE-EEEEESBHHHHHHHHHHSTTEESSSS--EEEEEEECCS
T ss_pred HHhcCCeEEEEEeecCCCCccceE-EEEEECCHHHHHHHHHHhCCCEECCe--EEEEEECCCC
Confidence 99999999998863 57888 99999999999999999999999877 8899998743
No 63
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=3.6e-19 Score=143.81 Aligned_cols=123 Identities=12% Similarity=0.212 Sum_probs=77.5
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCC
Q 013267 293 HALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLP 372 (446)
Q Consensus 293 ~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 372 (446)
++|.+|++...|..||..++|....|+. ...+..+. ....++++|||+|||
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~----------------------------~~~~~~~~l~V~nLp 56 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPP----------------------------PDVEGMTSLKVDNLT 56 (135)
T ss_dssp ------------------------------CCSCCSC----------------------------SSGGGCCCEEEECCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCC----------------------------CCCCCCCEEEEeCCC
Confidence 5789999999999999999987665542 11111110 011245799999999
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcccccc
Q 013267 373 QDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIREN 444 (446)
Q Consensus 373 ~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~ 444 (446)
.++|+++|+++|++||.|.++.++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|.|++++.....
T Consensus 57 ~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~~ 132 (135)
T 2lea_A 57 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 132 (135)
T ss_dssp SSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCTT
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCcc
Confidence 999999999999999999999998542 378999999999999999999999999999999999998766544
No 64
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=129.85 Aligned_cols=75 Identities=13% Similarity=0.322 Sum_probs=70.1
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
..++|||+|||.++|+++|+++|++||+|.+|++++++ |||||+|.+.++|.+|++.||+. .++|++|+|+|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~--~~~gr~l~V~~ 95 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL--RLQSKTIKVSY 95 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEE
Confidence 45789999999999999999999999999999998763 79999999999999999999998 89999999999
Q ss_pred ccc
Q 013267 78 SSH 80 (446)
Q Consensus 78 ~~~ 80 (446)
+.|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 865
No 65
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=3.3e-18 Score=123.14 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=71.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
.+.-|||+||+..+||++|+++|.+||.|.++++.. .+|||||+|.++++|.+|++.||+..+.|+.|+|.+|...
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~ 81 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSEN 81 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHH
Confidence 467899999999999999999999999999999974 6999999999999999999999999999999999999643
No 66
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=7.9e-18 Score=125.36 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=71.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++++++|+++|++||.|.++.+..++ .+|||||+|.+.++|++|++.|||..++|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356899999999999999999999999999999998653 2789999999999999999999999999999999999
Q ss_pred cCc
Q 013267 437 QLQ 439 (446)
Q Consensus 437 ~~~ 439 (446)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 876
No 67
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.9e-18 Score=128.34 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=78.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999998653 3789999999999999999999999999999999999
Q ss_pred cCccccccC
Q 013267 437 QLQSIRENS 445 (446)
Q Consensus 437 ~~~~~~~~~ 445 (446)
+++..++.+
T Consensus 86 ~~~~~~~~~ 94 (99)
T 1whw_A 86 TIKKEASQS 94 (99)
T ss_dssp CCCSTTCCC
T ss_pred CCCcccccC
Confidence 998876543
No 68
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.9e-18 Score=130.61 Aligned_cols=81 Identities=25% Similarity=0.292 Sum_probs=73.1
Q ss_pred cCCCccEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCC--CccCCCeEEEEe
Q 013267 359 CCSPTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA--SSLGGSIIRISF 435 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~--~~~~g~~l~v~~ 435 (446)
...|+++|||+|||.+ +++++|+++|++||.|.++.++ +++|||||+|.+.++|.+|++.||+ ..+.|++|+|+|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~--~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM--RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4567899999999998 9999999999999999999997 4689999999999999999998865 568999999999
Q ss_pred ecCccc
Q 013267 436 SQLQSI 441 (446)
Q Consensus 436 a~~~~~ 441 (446)
|+.+..
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 986543
No 69
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=2.3e-18 Score=135.57 Aligned_cols=102 Identities=18% Similarity=0.305 Sum_probs=90.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc---CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA---KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~---~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
+.++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|+..||+. .++|++|+|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGF--NVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTC--BSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEe
Confidence 457899999999999999999999999999999999875 489999999999999999999998 899999999998
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEEcCCCCCcCHHHHHHhhcCCCc
Q 013267 79 SHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGF 126 (446)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~t~~~l~~~f~~~G~ 126 (446)
.+.... .+++...++++|.++|++||.
T Consensus 83 ~~~~~~---------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF---------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT---------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh---------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 764332 346677889999999999985
No 70
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=9e-18 Score=127.47 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=75.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
|+++|||+|||.++++++|+++|++||.|.++.+..++. +|||||+|.+.++|.+|++.|||..++|+.|+|.|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 578999999999999999999999999999999986532 7899999999999999999999999999999999999
Q ss_pred Cccccc
Q 013267 438 LQSIRE 443 (446)
Q Consensus 438 ~~~~~~ 443 (446)
++....
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 887543
No 71
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=127.98 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=76.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC--CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN--GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~--~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
.+.++|||+|||.++++++|+++|++||.|.++.+..++ .+|||||+|.+.++|.+|++.||+..+.|+.|+|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 467899999999999999999999999999999998653 378999999999999999999999999999999999998
Q ss_pred ccccc
Q 013267 439 QSIRE 443 (446)
Q Consensus 439 ~~~~~ 443 (446)
+..+.
T Consensus 93 ~~~~~ 97 (103)
T 2cqi_A 93 PSSQK 97 (103)
T ss_dssp TTCCC
T ss_pred Ccccc
Confidence 76554
No 72
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.4e-18 Score=127.22 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=75.4
Q ss_pred CccEEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEEeeCC-ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 362 PTKMIHLSTLPQDVTEEEIV----SHLEEHGSIVNTKLFEMNG-KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~----~~F~~~G~v~~~~i~~~~~-~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
..++|||+|||.++++++|+ ++|++||.|.++.++.++. +|||||+|.+.++|++|++.|||..+.|++|+|+|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 46799999999999999999 9999999999999985433 899999999999999999999999999999999999
Q ss_pred cCccccc
Q 013267 437 QLQSIRE 443 (446)
Q Consensus 437 ~~~~~~~ 443 (446)
+++..+.
T Consensus 88 ~~~~~~~ 94 (96)
T 2dgx_A 88 TGASGPS 94 (96)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 9886543
No 73
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1.6e-17 Score=122.47 Aligned_cols=77 Identities=16% Similarity=0.262 Sum_probs=72.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
.+|||+|||.++++++|+++|++||.|.++.++.++. +|+|||+|.+.++|++|++.|||..+.|+.|+|.|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5899999999999999999999999999999986532 789999999999999999999999999999999999986
Q ss_pred c
Q 013267 440 S 440 (446)
Q Consensus 440 ~ 440 (446)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 74
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=127.40 Aligned_cols=84 Identities=19% Similarity=0.319 Sum_probs=77.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC--ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~--~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
.+.++|||+|||.++++++|+++|++||.|.++.++.++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 4578999999999999999999999999999999986543 88999999999999999999999999999999999999
Q ss_pred cccccc
Q 013267 439 QSIREN 444 (446)
Q Consensus 439 ~~~~~~ 444 (446)
+..+..
T Consensus 93 ~~~~~~ 98 (103)
T 2cq3_A 93 RVMTNS 98 (103)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876653
No 75
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=124.86 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=74.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC-----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.+++|||+|||.++++++|+++|++||.|.++.+..+. .+|+|||+|.+.++|.+|++.|||..+.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 35799999999999999999999999999999998664 4789999999999999999999999999999999999
Q ss_pred cCccc
Q 013267 437 QLQSI 441 (446)
Q Consensus 437 ~~~~~ 441 (446)
+++..
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88654
No 76
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=127.28 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=75.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC-------CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEE
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-------GKKQALVLFETEEQATEALVCKHASSLGGSIIRI 433 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-------~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 433 (446)
.++++|||+|||.++++++|+++|++||.|.++.+..++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 467899999999999999999999999999999998543 2689999999999999999999999999999999
Q ss_pred EeecCccccc
Q 013267 434 SFSQLQSIRE 443 (446)
Q Consensus 434 ~~a~~~~~~~ 443 (446)
.|++++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9999877554
No 77
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.4e-17 Score=123.41 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=71.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++++++|+++|++||.|.++.++.++ .+|+|||+|.+.++|.+|++.|||..+.|+.|+|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999997652 2789999999999999999999999999999999998
Q ss_pred c
Q 013267 437 Q 437 (446)
Q Consensus 437 ~ 437 (446)
|
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 78
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=128.01 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=76.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee--CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM--NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
.++++|||+|||.++|+++|+++|++||.|.++.+..+ +.+|||||+|.+.++|.+|++.|||..+.|+.|+|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 35789999999999999999999999999999999866 3378999999999999999999999999999999999999
Q ss_pred ccccc
Q 013267 439 QSIRE 443 (446)
Q Consensus 439 ~~~~~ 443 (446)
+..++
T Consensus 93 ~~~~~ 97 (103)
T 2d9p_A 93 KEERQ 97 (103)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87654
No 79
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=125.63 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=75.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
+++++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 467899999999999999999999999999999998653 3789999999999999999999999999999999999
Q ss_pred cCcccc
Q 013267 437 QLQSIR 442 (446)
Q Consensus 437 ~~~~~~ 442 (446)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 987643
No 80
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.2e-17 Score=140.14 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=75.2
Q ss_pred EEeCCHHHHHHHHHHhcCCeeC--CcEEEEEEecCCCCCCCCCccccccCCcccccccccccccccCCCccEEEEeCCCC
Q 013267 296 VQMGDGFQAELAVHFLKGALLF--GKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQ 373 (446)
Q Consensus 296 V~f~~~~~A~~A~~~lng~~~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~ 373 (446)
.+|++.++|..|+..+++.... |+.+...++.... ...|......... ..........++++|||+|||.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~------~~~~~~~~~s~~~--~~~~~~~~~~~~~~l~V~nLp~ 82 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA------IHSYERVRNEDDD--ELEPGPQRSVEGWILFVTSIHE 82 (165)
T ss_dssp ---------------------------------------------------------------CCCCC-CEEEEEESCCT
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc------ccCccccccCCCC--CCCCCCCCCCCCCEEEEeCCCC
Confidence 7899999999999999987664 5555555532211 0011110000000 0000111234678999999999
Q ss_pred CCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCccccc
Q 013267 374 DVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIRE 443 (446)
Q Consensus 374 ~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 443 (446)
.+++++|+++|++||.|..|.++.++ .+|||||+|.+.++|.+|++.|||..|.|+.|.|.|++++..+.
T Consensus 83 ~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 83 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999999999998653 27899999999999999999999999999999999999876654
No 81
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=2.1e-17 Score=129.95 Aligned_cols=85 Identities=21% Similarity=0.276 Sum_probs=78.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.+.++|||+|||.++++++|+++|+.||.|.++.++.++. +|||||+|.+.++|++|++.|||..+.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4678999999999999999999999999999999986632 789999999999999999999999999999999999
Q ss_pred cCccccccC
Q 013267 437 QLQSIRENS 445 (446)
Q Consensus 437 ~~~~~~~~~ 445 (446)
+++..++++
T Consensus 93 ~~~~~~~~~ 101 (115)
T 2dgo_A 93 TRKPPAPKS 101 (115)
T ss_dssp SCCCCCSCC
T ss_pred cCCCCCCcc
Confidence 988776553
No 82
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=125.89 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=75.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC---ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~---~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
.++++|||+|||.++++++|+++|++||.|.++.+..++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4578999999999999999999999999999999986542 6899999999999999999999999999999999999
Q ss_pred Cccc
Q 013267 438 LQSI 441 (446)
Q Consensus 438 ~~~~ 441 (446)
++..
T Consensus 95 ~~~~ 98 (100)
T 2do4_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8754
No 83
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=127.52 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=75.5
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 359 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
..+++++|||+|||..+++++|+++|++||.|.++.++.++. +|||||+|.+.++|.+|++.|||..+.|+.|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999986633 7899999999999999999999999999999999
Q ss_pred eecCcc
Q 013267 435 FSQLQS 440 (446)
Q Consensus 435 ~a~~~~ 440 (446)
|++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 999874
No 84
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=129.10 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=68.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCcc-ceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G-~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
|++|||+|||+++||+||+++|++|| +|.+|+++++ +|||||+|.+.++|++|++.+++. ..++|++|+|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~-~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHS-LNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTE-EEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCC-eEECCEEEEEEE
Confidence 68999999999999999999999999 7999999876 489999999999999999976432 279999999999
Q ss_pred ccccc
Q 013267 78 SSHQE 82 (446)
Q Consensus 78 ~~~~~ 82 (446)
+.++.
T Consensus 80 a~~~~ 84 (91)
T 2lxi_A 80 SDPKP 84 (91)
T ss_dssp CCSCC
T ss_pred cCCCC
Confidence 87653
No 85
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=127.09 Aligned_cols=80 Identities=20% Similarity=0.366 Sum_probs=75.0
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
.+++++|||+|||.++|+++|+++|++||.|.+|.+.+++++|||+|.+.++|.+|++.|++. .++|++|+|+++.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM--PLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTC--CBTTBCCEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC--EeCCceEEEEEcCCC
Confidence 357789999999999999999999999999999999999999999999999999999999998 799999999998775
Q ss_pred cc
Q 013267 82 EL 83 (446)
Q Consensus 82 ~~ 83 (446)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 86
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=125.10 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=73.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
..++++|||+|||.++++++|+++|++||.|.++.++.++ .+|+|||+|.+.++|.+|++.|||..+.|+.|+|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3567899999999999999999999999999999998653 278999999999999999999999999999999999
Q ss_pred ecC
Q 013267 436 SQL 438 (446)
Q Consensus 436 a~~ 438 (446)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 985
No 87
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=127.91 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=68.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCC--eeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCC----ccCCCeEEE
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGS--IVNTKLFEMN----GKKQALVLFETEEQATEALVCKHAS----SLGGSIIRI 433 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~--v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~----~~~g~~l~v 433 (446)
.+|||+|||+++|+++|+++|++||. |.+|+++.++ .+|||||+|.+.++|++|++.|||. .++||+|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 58999999999999999999999995 6688887653 3889999999999999999999997 488999999
Q ss_pred EeecC
Q 013267 434 SFSQL 438 (446)
Q Consensus 434 ~~a~~ 438 (446)
+||+.
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99986
No 88
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=127.57 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=75.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++++++|+++|++||.|.++.+..++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4578999999999999999999999999999999986543 789999999999999999999999999999999999
Q ss_pred cCccc
Q 013267 437 QLQSI 441 (446)
Q Consensus 437 ~~~~~ 441 (446)
+++..
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 98754
No 89
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.9e-17 Score=124.72 Aligned_cols=82 Identities=26% Similarity=0.274 Sum_probs=75.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC--ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~--~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
.++++|||+|||.++++++|+++|++||.|.++.+..+.+ +|||||+|.+.++|.+|++.|||..+.|+.|+|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4678999999999999999999999999999999986543 78999999999999999999999999999999999998
Q ss_pred cccc
Q 013267 439 QSIR 442 (446)
Q Consensus 439 ~~~~ 442 (446)
+...
T Consensus 86 ~~~~ 89 (92)
T 2dgv_A 86 ASGP 89 (92)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7654
No 90
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-17 Score=123.08 Aligned_cols=79 Identities=27% Similarity=0.366 Sum_probs=74.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.+.++|||+|||.++++++|+++|++||.|.++.+. ++||||+|.+.++|.+|++.||+..+.|+.|+|.|++++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 467899999999999999999999999999999997 7899999999999999999999999999999999999887
Q ss_pred ccc
Q 013267 441 IRE 443 (446)
Q Consensus 441 ~~~ 443 (446)
...
T Consensus 82 ~~~ 84 (90)
T 2dnq_A 82 KAS 84 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 91
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=3.5e-17 Score=126.46 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=77.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC---ceEEEEEeCCHHHHHHHHHHhCCCccCC---CeEEEE
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGG---SIIRIS 434 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~---~g~~fV~f~~~~~A~~A~~~l~~~~~~g---~~l~v~ 434 (446)
+++++|||+|||.++++++|+++|++||.|.++.+..++. +|||||+|.+.++|.+|++.|||..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4678999999999999999999999999999999986533 7899999999999999999999999998 999999
Q ss_pred eecCcccccc
Q 013267 435 FSQLQSIREN 444 (446)
Q Consensus 435 ~a~~~~~~~~ 444 (446)
|++++..++.
T Consensus 93 ~a~~~~~~~~ 102 (105)
T 2dnh_A 93 FADTDKESGP 102 (105)
T ss_dssp ESCSSCCCSC
T ss_pred ECccCcccCC
Confidence 9999876643
No 92
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=127.17 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=76.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
..++++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3467899999999999999999999999999999998653 278999999999999999999999999999999999
Q ss_pred ecCccccc
Q 013267 436 SQLQSIRE 443 (446)
Q Consensus 436 a~~~~~~~ 443 (446)
++++..+.
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 99886554
No 93
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=126.02 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=73.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccC--CCeEEEEeecC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG--GSIIRISFSQL 438 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~a~~ 438 (446)
+++++|||+|||.++++++|+++|++||.|.++.+.. ++|||||+|.+.++|++|++.||+..+. |++|+|.|+++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 4678999999999999999999999999999999974 4889999999999999999999999999 99999999998
Q ss_pred cc
Q 013267 439 QS 440 (446)
Q Consensus 439 ~~ 440 (446)
+.
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 94
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=1.8e-17 Score=122.82 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=72.1
Q ss_pred CCCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 1 ~~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
|.+++++|||+|||+++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.||+. .++|++|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~ 80 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES--ELFGRTIR 80 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC--EECCcEEE
Confidence 4678999999999999999999999999999999999765 589999999999999999999998 89999999
Q ss_pred EEecc
Q 013267 75 VQFSS 79 (446)
Q Consensus 75 v~~~~ 79 (446)
|++++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99863
No 95
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-17 Score=125.18 Aligned_cols=83 Identities=14% Similarity=0.291 Sum_probs=75.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++ ||+..+.|+.|+|.|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999998653 37899999999999999998 9999999999999999
Q ss_pred cCcccccc
Q 013267 437 QLQSIREN 444 (446)
Q Consensus 437 ~~~~~~~~ 444 (446)
+++..+..
T Consensus 87 ~~~~~~~~ 94 (99)
T 2dgs_A 87 EPRDSKSS 94 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCcccCC
Confidence 98876543
No 96
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=127.90 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=73.4
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
.+|+++|||+|||.++|+++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++.||+. .+.|++|+|
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~--~~~gr~i~V 80 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT--SVMGNIIHA 80 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC--EECCeEEEE
Confidence 468999999999999999999999999999999999876 389999999999999999999999 999999999
Q ss_pred Eeccccc
Q 013267 76 QFSSHQE 82 (446)
Q Consensus 76 ~~~~~~~ 82 (446)
+++....
T Consensus 81 ~~a~~~~ 87 (110)
T 3s8s_A 81 QLDIKGQ 87 (110)
T ss_dssp EECSTTH
T ss_pred EECCCCc
Confidence 9986543
No 97
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=125.87 Aligned_cols=80 Identities=20% Similarity=0.357 Sum_probs=74.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
+.+++|||+|||.++++++|+++|++||.|. +.++..+.+|||||+|.+.++|++|++.|||..+.|++|+|.|++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3578999999999999999999999999997 677777789999999999999999999999999999999999999875
Q ss_pred c
Q 013267 441 I 441 (446)
Q Consensus 441 ~ 441 (446)
.
T Consensus 96 ~ 96 (97)
T 2e5j_A 96 D 96 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 98
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=9.3e-18 Score=129.63 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=72.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHG-SIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
..++|||+|||.++++++|+++|++|| .|..+.+...+.+|||||+|.+.++|++|++.|||..+.|+.|+|.+++...
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 457999999999999999999999999 8999999755579999999999999999999999999999999999998664
Q ss_pred c
Q 013267 441 I 441 (446)
Q Consensus 441 ~ 441 (446)
.
T Consensus 107 ~ 107 (111)
T 2jvr_A 107 P 107 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 99
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=128.49 Aligned_cols=84 Identities=15% Similarity=0.307 Sum_probs=77.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
..+.++|||+|||..+++++|+++|++||.|.++.+.. ++|||||+|.+.++|.+|++.|||..+.|++|+|.|++++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 34678999999999999999999999999999999985 3899999999999999999999999999999999999998
Q ss_pred cccccC
Q 013267 440 SIRENS 445 (446)
Q Consensus 440 ~~~~~~ 445 (446)
.....+
T Consensus 100 ~~~~~~ 105 (109)
T 1x4g_A 100 PDMTSG 105 (109)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 765544
No 100
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=123.47 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=74.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.++++|||+|||.++|+++|+++|++||.|.++.+. ++||||+|.+.++|.+|++.|||..+.|+.|+|.|++++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 457899999999999999999999999999999997 5599999999999999999999999999999999999986
Q ss_pred cccc
Q 013267 441 IREN 444 (446)
Q Consensus 441 ~~~~ 444 (446)
.++.
T Consensus 83 ~~~~ 86 (90)
T 2dnp_A 83 KKSG 86 (90)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 101
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=125.80 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=74.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
.++.++|||+|||..+++++|+++|++||.|.++.+. +++|||||+|.+.++|.+|++.|||..+.|++|+|.|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH--KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE--TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 3567899999999999999999999999999999997 45899999999999999999999999999999999999987
Q ss_pred cc
Q 013267 440 SI 441 (446)
Q Consensus 440 ~~ 441 (446)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 102
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=127.80 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=77.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.+.++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 467899999999999999999999999999999997542 3889999999999999999999999999999999999
Q ss_pred cCcccccc
Q 013267 437 QLQSIREN 444 (446)
Q Consensus 437 ~~~~~~~~ 444 (446)
+++..++.
T Consensus 90 ~~~~~~~~ 97 (102)
T 2cqb_A 90 KPMRIKES 97 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99877654
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=128.86 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=74.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC--ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~--~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
.++++|||+|||.++++++|+++|++||.|.++++..+++ +|||||+|.+.++|++|++.|||..+.|+.|+|.|+++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4578999999999999999999999999999999986544 88999999999999999999999999999999999998
Q ss_pred cc
Q 013267 439 QS 440 (446)
Q Consensus 439 ~~ 440 (446)
+.
T Consensus 107 ~~ 108 (109)
T 2err_A 107 RV 108 (109)
T ss_dssp SC
T ss_pred Cc
Confidence 75
No 104
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=126.42 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=73.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceec--CeEeEEEecc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIR--GRNVYVQFSS 79 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~--g~~i~v~~~~ 79 (446)
.+|+++|||+|||.++|+++|+++|++||.|.+|.+.+++++|||+|.+.++|++|++.||+. .++ |++|+|+++.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGF--PLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTC--BCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCC--EeCCCCcEEEEEECC
Confidence 457899999999999999999999999999999999999999999999999999999999998 788 9999999987
Q ss_pred cc
Q 013267 80 HQ 81 (446)
Q Consensus 80 ~~ 81 (446)
++
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 105
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=4.8e-17 Score=127.92 Aligned_cols=85 Identities=14% Similarity=0.265 Sum_probs=77.0
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 359 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
..++.++|||+|||.++++++|+++|++||.|.+++++.++. +|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 335678999999999999999999999999999999986542 6899999999999999999999999999999999
Q ss_pred eecCccccc
Q 013267 435 FSQLQSIRE 443 (446)
Q Consensus 435 ~a~~~~~~~ 443 (446)
|++++..+.
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 999876543
No 106
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=126.37 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=76.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++.||+..+.|+.|+|.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999998653 3789999999999999999999999999999999999
Q ss_pred cCccccc
Q 013267 437 QLQSIRE 443 (446)
Q Consensus 437 ~~~~~~~ 443 (446)
+++....
T Consensus 90 ~~~~~~~ 96 (102)
T 1x5s_A 90 GKSSDNR 96 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 107
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=124.59 Aligned_cols=77 Identities=19% Similarity=0.346 Sum_probs=71.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
+++++|||+|||.++++++|+++|++||.|.++.+..++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|+||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 467899999999999999999999999999999998653 3789999999999999999999999999999999998
Q ss_pred c
Q 013267 437 Q 437 (446)
Q Consensus 437 ~ 437 (446)
|
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 6
No 108
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=128.18 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=74.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCccc
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 441 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 441 (446)
.+++|||+|||.++++++|+++|++||.|.++.+.+ .+++|||+|.+.++|.+|++.|||..+.|++|+|+|++....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 357999999999999999999999999999999873 689999999999999999999999999999999999988765
Q ss_pred ccc
Q 013267 442 REN 444 (446)
Q Consensus 442 ~~~ 444 (446)
..+
T Consensus 87 ~~~ 89 (111)
T 1whx_A 87 GAA 89 (111)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 109
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=127.62 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=80.4
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccccc
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELT 84 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~~~ 84 (446)
++|||+|||.++|+++|+++|++||+|.+|.+.++ +|+|||+|.+.++|.+|++.|++. .++|++|+|+++.+....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK--VICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHS--CSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCC--eECCcEEEEEEccCCCCc
Confidence 47999999999999999999999999999999997 899999999999999999999998 799999999998776533
Q ss_pred ccccCCCCCCCCCCcEEEEEEcCCC
Q 013267 85 TMEQNAQGRGDEPNRILLVTIHHML 109 (446)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~v~v~nl~ 109 (446)
........+ ......+||+||+
T Consensus 79 ~~~~~~~~~---~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFDRPPAR---RKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSCCCS---CCCCSCCCSCCCC
T ss_pred ccCCCCCcc---ccCCCceecCCCC
Confidence 221111111 1112237888885
No 110
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=127.63 Aligned_cols=82 Identities=21% Similarity=0.361 Sum_probs=75.6
Q ss_pred CCCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 1 ~~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
|.+++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.|++. .++|++|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 85 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES--ELFGRTIR 85 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE--EETTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCcEEE
Confidence 5678999999999999999999999999999999999876 589999999999999999999988 89999999
Q ss_pred EEeccccccc
Q 013267 75 VQFSSHQELT 84 (446)
Q Consensus 75 v~~~~~~~~~ 84 (446)
|.++.+....
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2cqb_A 86 VNLAKPMRIK 95 (102)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9998776543
No 111
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=2.7e-17 Score=124.84 Aligned_cols=79 Identities=22% Similarity=0.406 Sum_probs=73.9
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
|+++|||+|||.++|+++|+++|++||.|.+|+++.+ +|+|||+|.+.++|.+|++.+++. .++|++|+|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY--QLGSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEE
Confidence 7899999999999999999999999999999999876 589999999999999999999998 89999999999
Q ss_pred ccccccc
Q 013267 78 SSHQELT 84 (446)
Q Consensus 78 ~~~~~~~ 84 (446)
+.+....
T Consensus 79 a~~~~~~ 85 (96)
T 2x1f_A 79 SSNSDIS 85 (96)
T ss_dssp CSCSSGG
T ss_pred cCCCCCC
Confidence 9876544
No 112
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=5.4e-17 Score=123.89 Aligned_cols=78 Identities=24% Similarity=0.346 Sum_probs=72.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCeeE--------EEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccC
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN--------TKLFEMNG----KKQALVLFETEEQATEALVCKHASSLG 427 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--------~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~ 427 (446)
.++.++|||+|||.++++++|+++|++||.|.+ +.++.++. +|||||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 356789999999999999999999999999999 98886532 789999999999999999999999999
Q ss_pred CCeEEEEeec
Q 013267 428 GSIIRISFSQ 437 (446)
Q Consensus 428 g~~l~v~~a~ 437 (446)
|+.|+|.||+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 113
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=127.52 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=75.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~ 82 (446)
.++++|||+|||.++|+++|+++|++||.|.+|++++++|+|||+|.+.++|.+|+..|++. .++|++|+|.|+.+..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT--TIEGHVVKCYWGKESP 100 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEecCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999998 8999999999988765
Q ss_pred cc
Q 013267 83 LT 84 (446)
Q Consensus 83 ~~ 84 (446)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 114
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=123.49 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=72.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC---ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~---~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
.++++|||+|||..+++++|+++|++||.|.++.+..++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 4578999999999999999999999999999999986543 7899999999999999999999999999999999987
Q ss_pred C
Q 013267 438 L 438 (446)
Q Consensus 438 ~ 438 (446)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 115
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=125.66 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=75.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEE-EEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT-KLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~-~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
.++++|||+|||.++++++|+++|++||.|.++ .++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 887652 378999999999999999999999999999999999
Q ss_pred ecCccccc
Q 013267 436 SQLQSIRE 443 (446)
Q Consensus 436 a~~~~~~~ 443 (446)
++++..+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99887554
No 116
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=1e-17 Score=125.41 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=66.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccC--CeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G--~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
.+|||+|||.++|+++|+++|++|| .|.+++++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|.+++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999998663 27899999999999999999999999999999999999
Q ss_pred Ccccccc
Q 013267 438 LQSIREN 444 (446)
Q Consensus 438 ~~~~~~~ 444 (446)
++..++.
T Consensus 82 ~~~~~~~ 88 (90)
T 3p5t_L 82 KLEHHHH 88 (90)
T ss_dssp -------
T ss_pred CCccccC
Confidence 9876653
No 117
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.9e-17 Score=124.30 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=74.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.+ +++|||+|.+.++|.+|+..|++. .++|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT--VVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEc
Confidence 57799999999999999999999999999999999987 689999999999999999999998 899999999998
Q ss_pred ccccccc
Q 013267 79 SHQELTT 85 (446)
Q Consensus 79 ~~~~~~~ 85 (446)
.+.....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cq3_A 91 TARVMTN 97 (103)
T ss_dssp CSSCCCC
T ss_pred ccCCCCC
Confidence 8765443
No 118
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.6e-17 Score=127.21 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=77.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhC------CCccCCCe
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKH------ASSLGGSI 430 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~------~~~~~g~~ 430 (446)
.++++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++.|| +..+.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 467899999999999999999999999999999998552 38899999999999999999999 99999999
Q ss_pred EEEEeecCcccccc
Q 013267 431 IRISFSQLQSIREN 444 (446)
Q Consensus 431 l~v~~a~~~~~~~~ 444 (446)
|+|.|++++...+.
T Consensus 93 l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 93 LKVDLAVTRDEAAS 106 (111)
T ss_dssp EEEECCCCCCCCCC
T ss_pred EEEEECCCCccCCC
Confidence 99999998876554
No 119
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=5.1e-17 Score=123.23 Aligned_cols=78 Identities=13% Similarity=0.250 Sum_probs=72.6
Q ss_pred cCCCccEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 359 CCSPTKMIHLSTLPQ-DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
..+++++|||+|||. ++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|||..+.|++|+|+|++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 446789999999998 99999999999999999999993 8999999999999999999999999999999999998
Q ss_pred Ccc
Q 013267 438 LQS 440 (446)
Q Consensus 438 ~~~ 440 (446)
++.
T Consensus 94 ~~~ 96 (97)
T 2xnq_A 94 SNA 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 120
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.4e-17 Score=126.79 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=75.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC-CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
.+.++|||+|||.++|+++|+++|++||.|.++.+..+. .++||||+|.+.++|.+|++.||+..+.|+.|+|.|++++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 457899999999999999999999999999999997543 3889999999999999999999999999999999999987
Q ss_pred ccc
Q 013267 440 SIR 442 (446)
Q Consensus 440 ~~~ 442 (446)
...
T Consensus 100 ~~~ 102 (109)
T 1x4a_A 100 RGT 102 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 121
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=129.65 Aligned_cols=83 Identities=17% Similarity=0.334 Sum_probs=74.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEEee-CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIV----SHLEEHGSIVNTKLFEM-NGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~v~~~~i~~~-~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
.+|+++|||+|||..+++++|+ ++|++||.|.+|.+... +.+|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4578899999999999998876 69999999999988642 458999999999999999999999999999999999
Q ss_pred eecCcccc
Q 013267 435 FSQLQSIR 442 (446)
Q Consensus 435 ~a~~~~~~ 442 (446)
||+.+...
T Consensus 106 ~a~~~~~~ 113 (127)
T 2a3j_A 106 FSETPQSQ 113 (127)
T ss_dssp ECCCCCHH
T ss_pred EccCcchh
Confidence 99987643
No 122
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=126.39 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=77.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhc-cCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCc-cCCCeEEEEe
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEE-HGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASS-LGGSIIRISF 435 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~-~~g~~l~v~~ 435 (446)
.++++|||+|||.++|+++|+++|++ ||.|.++.++.++ .+|||||+|.+.++|.+|++.||+.. +.|+.|+|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 46789999999999999999999999 9999999998653 37899999999999999999999999 9999999999
Q ss_pred ecCccccccC
Q 013267 436 SQLQSIRENS 445 (446)
Q Consensus 436 a~~~~~~~~~ 445 (446)
++++..+.++
T Consensus 87 a~~~~~~~~~ 96 (104)
T 2dhg_A 87 AIPKASRVKP 96 (104)
T ss_dssp CCCCCSCCCC
T ss_pred ccCCCcCCCC
Confidence 9888766543
No 123
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=121.70 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=71.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhh-ccCCceecCeEeEEEecc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFY-TNVQPTIRGRNVYVQFSS 79 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~-~~~~~~~~g~~i~v~~~~ 79 (446)
+++++|||+|||.++|+++|+++|++||.|.+|.+++++|+|||+|.+.++|.+|++.| ++. .++|++|+|+|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~--~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKL--IVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTC--EETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCe--eECCCEEEEEecC
Confidence 46789999999999999999999999999999999999999999999999999999988 877 8999999999863
No 124
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=121.85 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=73.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.++++|||+|||.++++++|+++|++||.|.++.+. ++||||+|.+.++|.+|++.|||..+.|+.|+|.|++++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 457899999999999999999999999999999996 5599999999999999999999999999999999999876
Q ss_pred cc
Q 013267 441 IR 442 (446)
Q Consensus 441 ~~ 442 (446)
..
T Consensus 84 ~~ 85 (92)
T 2dgt_A 84 RT 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 125
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=127.77 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=76.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
.++++|||+|||.++++++|+++|++||.|.++.+..++ .+|||||+|.+.++|++|++.|||..+.|+.|+|.|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 356899999999999999999999999999999998653 37899999999999999999999999999999999999
Q ss_pred Cccccc
Q 013267 438 LQSIRE 443 (446)
Q Consensus 438 ~~~~~~ 443 (446)
++..+.
T Consensus 85 ~~~~~~ 90 (116)
T 2fy1_A 85 KPSFQS 90 (116)
T ss_dssp CSSCSS
T ss_pred CCCCCC
Confidence 877543
No 126
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=126.33 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=75.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++++++|+++|++||.|.++.+..++ .+|||||+|.+.++|++|++.|||..+.|+.|+|.|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 457899999999999999999999999999999998653 3789999999999999999999999999999999999
Q ss_pred cCcccc
Q 013267 437 QLQSIR 442 (446)
Q Consensus 437 ~~~~~~ 442 (446)
+++...
T Consensus 91 ~~~~~~ 96 (103)
T 2dnm_A 91 RYGRRD 96 (103)
T ss_dssp SSCCSC
T ss_pred CcCCCC
Confidence 976544
No 127
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=121.74 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=69.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.|++. .++|++|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ--WLGGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEE
Confidence 57899999999999999999999999999999999886 389999999999999999999998 8999999999
Q ss_pred ecccc
Q 013267 77 FSSHQ 81 (446)
Q Consensus 77 ~~~~~ 81 (446)
++.++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 98753
No 128
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.4e-17 Score=121.51 Aligned_cols=78 Identities=19% Similarity=0.374 Sum_probs=72.5
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
..++++|||+|||.++|+++|+++|++||.|.+|.++ +++|||+|.+.++|.+|++.+++. .++|++|+|+++.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHY--KLHGVNINVEASKNK 80 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTC--BCSSCBCEEECSSCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCC--ccCCcEEEEEECCCC
Confidence 4578999999999999999999999999999999998 689999999999999999999988 899999999998775
Q ss_pred cc
Q 013267 82 EL 83 (446)
Q Consensus 82 ~~ 83 (446)
..
T Consensus 81 ~~ 82 (90)
T 2dnq_A 81 SK 82 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 129
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=5.4e-17 Score=119.60 Aligned_cols=75 Identities=12% Similarity=0.242 Sum_probs=70.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
+.+|||+|||.++|+++|+++|++||.|.++.++.+ +|+|||+|.+.++|.+|++.|++. .++|++|+|+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ--DLNGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC--eeCCcEEEEEec
Confidence 468999999999999999999999999999999977 589999999999999999999998 899999999998
Q ss_pred ccc
Q 013267 79 SHQ 81 (446)
Q Consensus 79 ~~~ 81 (446)
.+.
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 764
No 130
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=3.7e-17 Score=126.53 Aligned_cols=80 Identities=24% Similarity=0.357 Sum_probs=73.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
..++++|||+|||.++++++|+++|++||.|.++.+. +|||||+|.+.++|++|++.|||..+.|+.|+|+|++++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 3467899999999999999999999999999999997 899999999999999999999999999999999999988
Q ss_pred cccc
Q 013267 440 SIRE 443 (446)
Q Consensus 440 ~~~~ 443 (446)
..+.
T Consensus 104 ~~r~ 107 (108)
T 2jvo_A 104 AKRY 107 (108)
T ss_dssp C---
T ss_pred CCCC
Confidence 6653
No 131
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=4.8e-17 Score=125.12 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=74.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.+.++|||+|||.++|+++|+++|++||.|.++.++ ++||||+|.+.++|.+|++.||+..+.|+.|+|.|++++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 356899999999999999999999999999999986 6799999999999999999999999999999999999887
Q ss_pred cccc
Q 013267 441 IREN 444 (446)
Q Consensus 441 ~~~~ 444 (446)
.+.+
T Consensus 85 ~~~~ 88 (103)
T 2dgu_A 85 QKRK 88 (103)
T ss_dssp CCCC
T ss_pred ccch
Confidence 6554
No 132
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.6e-17 Score=124.00 Aligned_cols=80 Identities=15% Similarity=0.333 Sum_probs=72.5
Q ss_pred CCCccEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 360 CSPTKMIHLSTLPQ-DVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 360 ~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
.+++++|||+|||. .+++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|||..+.|++|+|.|+++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 35678999999998 99999999999999999999995 88999999999999999999999999999999999988
Q ss_pred ccccc
Q 013267 439 QSIRE 443 (446)
Q Consensus 439 ~~~~~ 443 (446)
+...+
T Consensus 83 ~~~~~ 87 (96)
T 2kvi_A 83 NARPQ 87 (96)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 76544
No 133
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.5e-17 Score=126.29 Aligned_cols=77 Identities=18% Similarity=0.339 Sum_probs=72.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
+.+++|||+|||.++++++|+++|++||.|.++++. +.+|||||+|.+.++|.+|++.|||..+.|+.|+|.|++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 456899999999999999999999999999999998 56999999999999999999999999999999999999875
No 134
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.9e-17 Score=124.02 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=74.1
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEE-EEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKL-VMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~-~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
..++++|||+|||.++|+++|+++|++||.|.+| +++++ +|+|||+|.+.++|.+|++.|++. .++|++|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 79 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ--YLCNRPIT 79 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC--EETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCEEEE
Confidence 4688999999999999999999999999999999 99876 589999999999999999999998 89999999
Q ss_pred EEecccccc
Q 013267 75 VQFSSHQEL 83 (446)
Q Consensus 75 v~~~~~~~~ 83 (446)
|+++.+...
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999877543
No 135
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=4.4e-17 Score=127.07 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=75.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999998653 2789999999999999999999999999999999999
Q ss_pred cCcccc
Q 013267 437 QLQSIR 442 (446)
Q Consensus 437 ~~~~~~ 442 (446)
+++..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 987643
No 136
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=124.11 Aligned_cols=81 Identities=23% Similarity=0.253 Sum_probs=74.6
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
+.++++|||+|||.++|+++|+++|++||.|.+|.++.++ |+|||+|.+.++|.+|++.|++. .++|++|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ--VFQGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE--ESSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC--EECCcEEEE
Confidence 4578999999999999999999999999999999998764 89999999999999999999998 899999999
Q ss_pred Eeccccccc
Q 013267 76 QFSSHQELT 84 (446)
Q Consensus 76 ~~~~~~~~~ 84 (446)
.++.+....
T Consensus 83 ~~a~~~~~~ 91 (99)
T 1whw_A 83 LPSTIKKEA 91 (99)
T ss_dssp EECCCCSTT
T ss_pred EEcCCCccc
Confidence 998876543
No 137
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=125.82 Aligned_cols=83 Identities=20% Similarity=0.214 Sum_probs=76.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++.||+..+.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999998653 3789999999999999999999999999999999999
Q ss_pred cCccccc
Q 013267 437 QLQSIRE 443 (446)
Q Consensus 437 ~~~~~~~ 443 (446)
+++..+.
T Consensus 93 ~~~~~~~ 99 (105)
T 1x5u_A 93 SAHNKNL 99 (105)
T ss_dssp TTTSCCC
T ss_pred CCCCcCC
Confidence 9876543
No 138
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=2e-17 Score=126.37 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=73.8
Q ss_pred CccEEEEeCCCC------CCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCC-Ce
Q 013267 362 PTKMIHLSTLPQ------DVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGG-SI 430 (446)
Q Consensus 362 ~~~~l~v~nlp~------~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g-~~ 430 (446)
.+++|||+|||. ++++++|+++|++||.|.++.++.++. +|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 999999999999999999999986642 7899999999999999999999999999 99
Q ss_pred EEEEeecCccc
Q 013267 431 IRISFSQLQSI 441 (446)
Q Consensus 431 l~v~~a~~~~~ 441 (446)
|+|.+++++..
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99999987643
No 139
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6e-17 Score=125.66 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=76.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee---C--CceEEEEEeCCHHHHHHHHHHh-CCCccCCCeEEEE
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM---N--GKKQALVLFETEEQATEALVCK-HASSLGGSIIRIS 434 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~---~--~~g~~fV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~ 434 (446)
.++++|||+|||.++++++|+++|++||.|.++.++.+ . .+|||||+|.+.++|.+|++.| |+..+.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 46789999999999999999999999999999999865 1 2789999999999999999999 9999999999999
Q ss_pred eecCccccc
Q 013267 435 FSQLQSIRE 443 (446)
Q Consensus 435 ~a~~~~~~~ 443 (446)
|++++...+
T Consensus 93 ~a~~~~~~~ 101 (107)
T 2cph_A 93 WADSEVTVQ 101 (107)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 999886554
No 140
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=5.1e-17 Score=127.80 Aligned_cols=81 Identities=15% Similarity=0.230 Sum_probs=74.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC-CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
.++++|||+|||.++++++|+++|+.||.|.++.+..+. ++|||||+|.+.++|.+|++.|||..+.|+.|+|+|++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 467899999999999999999999999999999998543 4889999999999999999999999999999999999975
Q ss_pred cc
Q 013267 440 SI 441 (446)
Q Consensus 440 ~~ 441 (446)
..
T Consensus 86 ~~ 87 (115)
T 3lqv_A 86 RA 87 (115)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 141
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=125.84 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=75.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC---ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~---~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
..++++|||+|||.++++++|+++|++||.|.++.++.++. +|||||+|.+.++|++|++.||+..+.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 35678999999999999999999999999999999986543 789999999999999999999999999999999999
Q ss_pred cCcccc
Q 013267 437 QLQSIR 442 (446)
Q Consensus 437 ~~~~~~ 442 (446)
+....+
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 866544
No 142
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.4e-17 Score=122.20 Aligned_cols=79 Identities=24% Similarity=0.409 Sum_probs=73.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
++++++|||+|||.++|+++|+++|++||.|.+|.++++ +|+|||+|.+.++|.+|++.|++. .++|++|+|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V 79 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF--ELAGRPMRV 79 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC--CSSSSCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEE
Confidence 578999999999999999999999999999999999986 479999999999999999999998 899999999
Q ss_pred Eeccccc
Q 013267 76 QFSSHQE 82 (446)
Q Consensus 76 ~~~~~~~ 82 (446)
+++.+..
T Consensus 80 ~~a~~~~ 86 (95)
T 2dnz_A 80 GHVTERL 86 (95)
T ss_dssp EESSCCC
T ss_pred EEccccc
Confidence 9987653
No 143
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=126.86 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=73.1
Q ss_pred CCCceEEEE--cCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCcee-----cCeEeE
Q 013267 2 TEPSKVIHV--RNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTI-----RGRNVY 74 (446)
Q Consensus 2 ~~~s~~l~v--~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~-----~g~~i~ 74 (446)
..|+++||| +|||.++|+++|+++|++||.|.+|.+.+++|||||+|.+.++|++|++.||+. .+ .|++|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~--~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK--EVVDDLGQKITLY 99 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTC--EEECTTSCEEECE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC--EEccccCCCcEEE
Confidence 468899999 779999999999999999999999999999999999999999999999999998 66 689999
Q ss_pred EEecccccc
Q 013267 75 VQFSSHQEL 83 (446)
Q Consensus 75 v~~~~~~~~ 83 (446)
|.|+..-.+
T Consensus 100 v~~a~~~p~ 108 (114)
T 2cq2_A 100 LNFVEKVQW 108 (114)
T ss_dssp EEEESCCCC
T ss_pred EEecccCcc
Confidence 999765433
No 144
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=123.25 Aligned_cols=75 Identities=17% Similarity=0.411 Sum_probs=67.9
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccc--eeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCC--ceecCeEeEE
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGV--ITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQ--PTIRGRNVYV 75 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~--i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~--~~~~g~~i~v 75 (446)
.+|||+|||+++|+++|+++|++||. |.+|++++| +|||||+|.+.++|.+|++.||+.. +.++|++|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 57999999999999999999999995 678999876 4899999999999999999999863 4699999999
Q ss_pred Eeccc
Q 013267 76 QFSSH 80 (446)
Q Consensus 76 ~~~~~ 80 (446)
+|++.
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99864
No 145
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=128.27 Aligned_cols=80 Identities=16% Similarity=0.300 Sum_probs=74.2
Q ss_pred CccEEEEeCCCCCCCHHHHH---HHhhccCCeeEEEEEeeC-------CceEEEEEeCCHHHHHHHHHHhCCCccCCCeE
Q 013267 362 PTKMIHLSTLPQDVTEEEIV---SHLEEHGSIVNTKLFEMN-------GKKQALVLFETEEQATEALVCKHASSLGGSII 431 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~---~~F~~~G~v~~~~i~~~~-------~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l 431 (446)
+.++|||+|||.++++++|+ ++|++||.|.++.+..++ .+|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 46799999999999999999 999999999999998553 24899999999999999999999999999999
Q ss_pred EEEeecCccc
Q 013267 432 RISFSQLQSI 441 (446)
Q Consensus 432 ~v~~a~~~~~ 441 (446)
+|+|++++.+
T Consensus 94 ~V~~a~~k~~ 103 (111)
T 2cpi_A 94 KASLGTTKYC 103 (111)
T ss_dssp EEESCCCCSC
T ss_pred EEEecccccc
Confidence 9999999874
No 146
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=126.22 Aligned_cols=81 Identities=17% Similarity=0.379 Sum_probs=74.8
Q ss_pred CCCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 1 ~~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
|..++++|||+|||.++|+++|+++|++||.|.+|.++++ +++|||+|.+.++|.+|++.||+. .++|++|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK--SVDGRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC--CTTSCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC--EECCeEEE
Confidence 5678899999999999999999999999999999999875 479999999999999999999998 79999999
Q ss_pred EEecccccc
Q 013267 75 VQFSSHQEL 83 (446)
Q Consensus 75 v~~~~~~~~ 83 (446)
|+++.+...
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999876544
No 147
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.6e-17 Score=123.63 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=73.2
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc---------CCeEEEEecChhHHHHHHHhhccCCceecCeE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA---------KNQALLQMQDVPSAINALQFYTNVQPTIRGRN 72 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~---------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~ 72 (446)
..++++|||+|||.++|+++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.|++. .++|++
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~ 79 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH--TVDGHK 79 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC--EETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC--eeCCeE
Confidence 367899999999999999999999999999999999853 379999999999999999999998 899999
Q ss_pred eEEEecccccc
Q 013267 73 VYVQFSSHQEL 83 (446)
Q Consensus 73 i~v~~~~~~~~ 83 (446)
|+|+++.+...
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 99999877543
No 148
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=120.50 Aligned_cols=75 Identities=16% Similarity=0.294 Sum_probs=70.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHh-CCCccCCCeEEEEeec
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCK-HASSLGGSIIRISFSQ 437 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~~a~ 437 (446)
.+.++|||+|||.++++++|+++|++||.|.++.+.. ++|+|||+|.+.++|.+|++.| ||..+.|++|+|.|||
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4568999999999999999999999999999999985 4899999999999999999999 9999999999999986
No 149
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=1.3e-16 Score=123.80 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=73.4
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 359 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
...++++|||+|||..+++++|+++|+.||.|.++.++.++ .+|+|||+|.+.++|.+|++.|||..+.|+.|+|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567899999999999999999999999999999998653 378999999999999999999999999999999999
Q ss_pred ecC
Q 013267 436 SQL 438 (446)
Q Consensus 436 a~~ 438 (446)
|+.
T Consensus 105 a~s 107 (107)
T 3ulh_A 105 VTS 107 (107)
T ss_dssp ECC
T ss_pred eCC
Confidence 863
No 150
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=121.85 Aligned_cols=78 Identities=24% Similarity=0.346 Sum_probs=72.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhcc--CCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEH--GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
.++++|||+|||..+++++|+++|++| |.|.++++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 467899999999999999999999999 999999875 78999999999999999999999999999999999998
Q ss_pred cccc
Q 013267 439 QSIR 442 (446)
Q Consensus 439 ~~~~ 442 (446)
+...
T Consensus 89 ~~~~ 92 (99)
T 2cpd_A 89 VDKD 92 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 151
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=4.6e-17 Score=130.19 Aligned_cols=82 Identities=23% Similarity=0.285 Sum_probs=75.5
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee----CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 359 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM----NGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~----~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
...++++|||+|||.++++++|+++|++||.|.+++++.+ +.+|||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3457889999999999999999999999999999999855 348899999999999999999999999999999999
Q ss_pred eecCcc
Q 013267 435 FSQLQS 440 (446)
Q Consensus 435 ~a~~~~ 440 (446)
|++++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998864
No 152
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=125.66 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=75.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
+.++|||+|||.++++++|+++|++||.|.++.++.++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.|++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 458999999999999999999999999999999986632 7899999999999999999999999999999999999
Q ss_pred Cccccc
Q 013267 438 LQSIRE 443 (446)
Q Consensus 438 ~~~~~~ 443 (446)
++..++
T Consensus 87 ~~~~~~ 92 (104)
T 1p1t_A 87 SEKNKE 92 (104)
T ss_dssp CTTHHH
T ss_pred Cccchh
Confidence 887654
No 153
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.4e-17 Score=123.54 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=73.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..|++. .+.|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGR--KILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTE--EETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCC--CcCCCeEEEEEC
Confidence 46799999999999999999999999999999999985 589999999999999999999988 899999999998
Q ss_pred ccccc
Q 013267 79 SHQEL 83 (446)
Q Consensus 79 ~~~~~ 83 (446)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 77543
No 154
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.9e-17 Score=123.74 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=74.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCee-EEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCe----E
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV-NTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSI----I 431 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~-~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~----l 431 (446)
.++++|||+|||.++++++|+++|++||.|. +++++.++ .+|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4678999999999999999999999999999 99998664 2689999999999999999999999999999 9
Q ss_pred EEEeecCcc
Q 013267 432 RISFSQLQS 440 (446)
Q Consensus 432 ~v~~a~~~~ 440 (446)
+|+|+++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999999874
No 155
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=1.1e-16 Score=130.76 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=71.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCC--CeEEEEeecCccc
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG--SIIRISFSQLQSI 441 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~~~ 441 (446)
..|||+||+..+|+++|+++|++||.|+++.++..+.+|||||+|.+.++|++|++.|||..|.| +.|+|+||+++..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 35889999999999999999999999999999866568899999999999999999999999965 9999999999854
No 156
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.3e-17 Score=125.00 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=72.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
+.+++|||+|||.++|+++|+++|++||.|.+|++.+.+|+|||+|.+.++|.+|+..|++. .++|++|+|+|+.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANF--PFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC--EETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEeccC
Confidence 35789999999999999999999999999999999999999999999999999999999998 89999999999765
No 157
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=122.09 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=72.8
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
..++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++ +++. .++|++|+|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~--~~~g~~l~V 83 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH--DIMGKKVEV 83 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC--BSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC--EECCeEEEE
Confidence 357899999999999999999999999999999999875 4899999999999999999 8887 899999999
Q ss_pred Eeccccccc
Q 013267 76 QFSSHQELT 84 (446)
Q Consensus 76 ~~~~~~~~~ 84 (446)
.++.+....
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 998775443
No 158
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=8.1e-17 Score=124.64 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=75.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCcc---CCCeEEE
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSL---GGSIIRI 433 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~---~g~~l~v 433 (446)
.+.++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++.||+..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 457899999999999999999999999999999998643 378999999999999999999999988 8999999
Q ss_pred EeecCccccc
Q 013267 434 SFSQLQSIRE 443 (446)
Q Consensus 434 ~~a~~~~~~~ 443 (446)
.|++++..+.
T Consensus 91 ~~a~~~~~~~ 100 (106)
T 2dgp_A 91 KPADSESRGG 100 (106)
T ss_dssp EECCCCSCCC
T ss_pred EECCcccccC
Confidence 9999877654
No 159
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.1e-17 Score=125.46 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=71.6
Q ss_pred cCCCccEEEE--eCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCcc-----CCCeE
Q 013267 359 CCSPTKMIHL--STLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL-----GGSII 431 (446)
Q Consensus 359 ~~~~~~~l~v--~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~-----~g~~l 431 (446)
...|+++||| +||+.++++++|+++|++||.|.++.+. .++|||||+|.+.++|++|++.|||+.+ .|++|
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~--~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP--PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC--TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 3457889999 6699999999999999999999999886 3689999999999999999999999988 68999
Q ss_pred EEEeecCc
Q 013267 432 RISFSQLQ 439 (446)
Q Consensus 432 ~v~~a~~~ 439 (446)
.|.|++..
T Consensus 99 ~v~~a~~~ 106 (114)
T 2cq2_A 99 YLNFVEKV 106 (114)
T ss_dssp EEEEESCC
T ss_pred EEEecccC
Confidence 99999754
No 160
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.8e-17 Score=122.29 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=73.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEE-EEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTK-LFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~-i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.+++|||+|||.++++++|+++|++||.|.+++ ++.++..+.|||+|.+.++|.+|++.|||..+.|+.|+|.|++++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 468999999999999999999999999999994 7766556679999999999999999999999999999999999984
Q ss_pred c
Q 013267 441 I 441 (446)
Q Consensus 441 ~ 441 (446)
.
T Consensus 94 ~ 94 (96)
T 2e44_A 94 A 94 (96)
T ss_dssp S
T ss_pred c
Confidence 3
No 161
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=124.39 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=72.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCC-----CeEEEEee
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG-----SIIRISFS 436 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g-----~~l~v~~a 436 (446)
+.++|||+|||.++++++|+++|++||.|.++.++.+ |||||+|.+.++|++|++.||+..|.| +.|+|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 4689999999999999999999999999999999853 999999999999999999999999999 99999999
Q ss_pred cCccc
Q 013267 437 QLQSI 441 (446)
Q Consensus 437 ~~~~~ 441 (446)
+++..
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 98754
No 162
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=129.17 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=77.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
..+.++|||+|||.++++++|+++|+.||.|.+++++.++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999987643 88999999999999999999999999999999999
Q ss_pred ecCccccc
Q 013267 436 SQLQSIRE 443 (446)
Q Consensus 436 a~~~~~~~ 443 (446)
++++..+.
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99887654
No 163
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.9e-17 Score=123.70 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=73.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
.++++|||+|||+++|+++|+++|++||.|.+|.++.+ +++|||+|.+.++|.+|++.|++. .++|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR--IVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTC--BSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEEe
Confidence 46789999999999999999999999999999999965 689999999999999999999998 899999999998
Q ss_pred cccccc
Q 013267 79 SHQELT 84 (446)
Q Consensus 79 ~~~~~~ 84 (446)
.+....
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 875443
No 164
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.8e-17 Score=123.91 Aligned_cols=82 Identities=28% Similarity=0.319 Sum_probs=74.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC-----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
.+.++|||+|||.++++++|+++|+.|| |.++.++.++ .+|||||+|.+.++|++|+ .||+..+.|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4678999999999999999999999999 9999998553 2789999999999999999 9999999999999999
Q ss_pred ecCcccccc
Q 013267 436 SQLQSIREN 444 (446)
Q Consensus 436 a~~~~~~~~ 444 (446)
++++..+..
T Consensus 91 a~~~~~~~~ 99 (104)
T 1wi8_A 91 ADQAQDKDS 99 (104)
T ss_dssp CCCCCCCCC
T ss_pred ccCCCCCCC
Confidence 999876553
No 165
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=5.7e-17 Score=124.29 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=73.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcccc
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSIR 442 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 442 (446)
++|||+|||.++|+++|+++|++||.|.++.+..+ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.|++++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 47999999999999999999999999999999865 6899999999999999999999999999999999999987643
No 166
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.6e-16 Score=122.20 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=73.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.+.++|||+|||.++++++|+++|++|| |.++.++.++. +|||||+|.+.++|.+|+ .||+..+.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4578999999999999999999999997 99999986642 789999999999999999 89999999999999999
Q ss_pred cCccccc
Q 013267 437 QLQSIRE 443 (446)
Q Consensus 437 ~~~~~~~ 443 (446)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9876543
No 167
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=119.14 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=72.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
..++++|||+|||.++|+++|+++|++||.|.+|.++++ +|||+|.+.++|.+|++.||+. .++|++|+|+++.+.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNT--EFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--EEEEEESCHHHHHHHHHHHTTE--EETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--EEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEEccCC
Confidence 357899999999999999999999999999999999865 9999999999999999999998 899999999998765
Q ss_pred cc
Q 013267 82 EL 83 (446)
Q Consensus 82 ~~ 83 (446)
..
T Consensus 83 ~~ 84 (92)
T 2dgt_A 83 LR 84 (92)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=115.73 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=66.8
Q ss_pred CCccE-EEEeCCCCCCCHHH----HHHHhhcc-CCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 361 SPTKM-IHLSTLPQDVTEEE----IVSHLEEH-GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 361 ~~~~~-l~v~nlp~~~t~~~----l~~~F~~~-G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
+|+.+ |||+|||.++++++ |+++|++| |.|.+|. .|+|||.|.+.++|.+|++.|||+.+.||+|+|+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 56677 99999999999887 55899999 5998882 3999999999999999999999999999999999
Q ss_pred eecCcc
Q 013267 435 FSQLQS 440 (446)
Q Consensus 435 ~a~~~~ 440 (446)
||+.++
T Consensus 80 ~A~~~s 85 (96)
T 2diu_A 80 FTPKNR 85 (96)
T ss_dssp SSCCSC
T ss_pred ecCCCc
Confidence 999875
No 169
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=121.43 Aligned_cols=78 Identities=22% Similarity=0.388 Sum_probs=72.7
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.++ |+|||+|.+.++|.+|+..|++. .++|++|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~ 90 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF--GYDHLILNVE 90 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC--EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC--eeCCcEEEEE
Confidence 468999999999999999999999999999999998763 79999999999999999999998 8999999999
Q ss_pred eccccc
Q 013267 77 FSSHQE 82 (446)
Q Consensus 77 ~~~~~~ 82 (446)
++.+..
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 987653
No 170
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=2.2e-16 Score=125.83 Aligned_cols=84 Identities=20% Similarity=0.183 Sum_probs=77.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
.++++|||+|||.++++++|+++|++||.|.++.+..++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.||+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 457899999999999999999999999999999998653 47899999999999999999999999999999999999
Q ss_pred Ccccccc
Q 013267 438 LQSIREN 444 (446)
Q Consensus 438 ~~~~~~~ 444 (446)
+....+.
T Consensus 113 ~~~~~~~ 119 (124)
T 2kt5_A 113 SQIDLEH 119 (124)
T ss_dssp CTTCCCC
T ss_pred CCCCCCC
Confidence 8876654
No 171
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=8.7e-17 Score=132.85 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=74.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccC--CeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
..++|||+|||.++|+++|+++|+.|| .|.+++++.++ .+|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999998663 278999999999999999999999999999999999
Q ss_pred ecCccccc
Q 013267 436 SQLQSIRE 443 (446)
Q Consensus 436 a~~~~~~~ 443 (446)
++++..++
T Consensus 134 a~~~~~~~ 141 (156)
T 3n9u_C 134 ATRQNLSQ 141 (156)
T ss_dssp CCHHHHHH
T ss_pred cCCCcchh
Confidence 98876543
No 172
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=121.89 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=72.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecC-----eEeEEEec
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRG-----RNVYVQFS 78 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g-----~~i~v~~~ 78 (446)
+.++|||+|||.++|+++|+++|++||.|.+|.++.+ ++|||+|.+.++|++|++.||+. .+.| ++|+|+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT--KFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSE--EEECTTSCEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcC--CccCCcCcceEEEEEeC
Confidence 5689999999999999999999999999999999998 99999999999999999999998 8999 99999998
Q ss_pred cccc
Q 013267 79 SHQE 82 (446)
Q Consensus 79 ~~~~ 82 (446)
.+..
T Consensus 91 ~~~~ 94 (108)
T 1x4c_A 91 GPRS 94 (108)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7754
No 173
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.9e-17 Score=126.11 Aligned_cols=77 Identities=13% Similarity=0.261 Sum_probs=72.8
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccc
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~ 82 (446)
++++|||+|||.++|+++|+++|++||.|.+|.+.+++++|||+|.+.++|++|++.||+. .++|++|+|+|+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS--KFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTC--BSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC--EECCeEEEEEECCCCc
Confidence 5689999999999999999999999999999999999999999999999999999999998 8999999999987643
No 174
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.7e-17 Score=124.73 Aligned_cols=80 Identities=15% Similarity=0.347 Sum_probs=73.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-------CCeEEEEecChhHHHHHHHhh-ccCCceecCeEeE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-------KNQALLQMQDVPSAINALQFY-TNVQPTIRGRNVY 74 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-------~~~afV~F~~~~~A~~A~~~~-~~~~~~~~g~~i~ 74 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++++ +|+|||+|.+.++|.+|++.| |+. .++|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~--~~~g~~l~ 90 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST--HLYGRRLV 90 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC--BSSSCBCE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC--eECCCEEE
Confidence 46789999999999999999999999999999999887 599999999999999999999 887 89999999
Q ss_pred EEeccccccc
Q 013267 75 VQFSSHQELT 84 (446)
Q Consensus 75 v~~~~~~~~~ 84 (446)
|+++.++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9998876443
No 175
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=2.8e-16 Score=123.51 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=73.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|+.||.|.+|+++.+ +|+|||+|.+.++|++|++.|++. .++|++|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~ 90 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ--WLGGRQIRTN 90 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC--EETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEE
Confidence 57899999999999999999999999999999999987 389999999999999999999998 8999999999
Q ss_pred ecccccc
Q 013267 77 FSSHQEL 83 (446)
Q Consensus 77 ~~~~~~~ 83 (446)
++.+...
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9876543
No 176
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.4e-17 Score=126.57 Aligned_cols=84 Identities=26% Similarity=0.354 Sum_probs=75.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCe----eEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSI----VNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v----~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
..++++|||+|||.++|+++|+++|++||.| ..+++...+.+|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3567999999999999999999999999999 566666545589999999999999999999999999999999999
Q ss_pred ecCccccc
Q 013267 436 SQLQSIRE 443 (446)
Q Consensus 436 a~~~~~~~ 443 (446)
++++..+.
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 99887654
No 177
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=5e-17 Score=123.67 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=74.9
Q ss_pred CCccEEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEEee-CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 361 SPTKMIHLSTLPQDVTEEEIV----SHLEEHGSIVNTKLFEM-NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~v~~~~i~~~-~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
+++++|||+|||.++++++|+ ++|++||.|.++.+... +.+|||||+|.+.++|.+|++.|||..+.|+.|+|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 578999999999999999999 99999999999998732 2378999999999999999999999999999999999
Q ss_pred ecCcccc
Q 013267 436 SQLQSIR 442 (446)
Q Consensus 436 a~~~~~~ 442 (446)
++++...
T Consensus 86 a~~~~~~ 92 (97)
T 1nu4_A 86 AKTDSDI 92 (97)
T ss_dssp CSSCCTH
T ss_pred ccCCCcc
Confidence 9987644
No 178
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=2.8e-16 Score=123.70 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=70.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceE-EEEEeCCHHHHHHHHHHhCCCccCC--CeEEEEeecCccc
Q 013267 365 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ-ALVLFETEEQATEALVCKHASSLGG--SIIRISFSQLQSI 441 (446)
Q Consensus 365 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~-~fV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~~~ 441 (446)
.|||+||+..+|+++|+++|++||.|.+++++.. .+|+ |||+|.+.++|.+|++.|||..|.| ++|+|+||+++..
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 4669999999999999999999999999998864 4677 9999999999999999999999988 8999999998754
No 179
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=123.86 Aligned_cols=77 Identities=22% Similarity=0.369 Sum_probs=72.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.|++. .++|++|+|+++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT--VVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTC--EETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEC
Confidence 46799999999999999999999999999999999877 689999999999999999999998 899999999998
Q ss_pred ccc
Q 013267 79 SHQ 81 (446)
Q Consensus 79 ~~~ 81 (446)
.++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 180
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=6.9e-17 Score=122.36 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=69.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
++.++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 346899999999999999999999999999988877543 2789999999999999999999999999999999998
Q ss_pred cC
Q 013267 437 QL 438 (446)
Q Consensus 437 ~~ 438 (446)
++
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 181
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=122.87 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.||+. .++|++|+|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~ 88 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA--ELDGRELRVQ 88 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC--CBTTBCCEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEE
Confidence 46799999999999999999999999999999999875 489999999999999999999998 8999999999
Q ss_pred eccccc
Q 013267 77 FSSHQE 82 (446)
Q Consensus 77 ~~~~~~ 82 (446)
++.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 987654
No 182
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=7e-17 Score=127.64 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=72.3
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 359 CCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
..+++++|||+|||.++++++|+++|++||.|.+++++.++ .+|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999998553 38899999999999999999999999999999999
Q ss_pred eec
Q 013267 435 FSQ 437 (446)
Q Consensus 435 ~a~ 437 (446)
|+|
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 986
No 183
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=121.04 Aligned_cols=76 Identities=22% Similarity=0.352 Sum_probs=71.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
+++++|||+|||+++|+++|+++|++||+|.+|.+.++ +|+|||+|.+.++|.+|++.|++. .++|++|+|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~ 91 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGI--RLYGRPINVSG 91 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTC--EETTEECEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCC--EECCCEEEEEE
Confidence 46799999999999999999999999999999999987 489999999999999999999998 89999999998
Q ss_pred ccc
Q 013267 78 SSH 80 (446)
Q Consensus 78 ~~~ 80 (446)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 184
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.4e-17 Score=121.60 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=72.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCC-CccCCCeEEEEeecC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGS-IVNTKLFEMNGKKQALVLFETEEQATEALVCKHA-SSLGGSIIRISFSQL 438 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~-~~~~g~~l~v~~a~~ 438 (446)
.+.++|||+|||.++|+++|+++|++||. |..+.+. .+|||||+|.+.++|++|++.||| ..+.|+.|+|.|+++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 45689999999999999999999999999 6666664 489999999999999999999999 999999999999998
Q ss_pred ccccc
Q 013267 439 QSIRE 443 (446)
Q Consensus 439 ~~~~~ 443 (446)
+..+.
T Consensus 83 ~~~~~ 87 (93)
T 2cqh_A 83 KKLRS 87 (93)
T ss_dssp CCCCC
T ss_pred ccccC
Confidence 86654
No 185
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.1e-16 Score=119.80 Aligned_cols=76 Identities=18% Similarity=0.382 Sum_probs=70.8
Q ss_pred CCCceEEEEcCCCC-CCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 2 TEPSKVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 2 ~~~s~~l~v~~lp~-~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
.+++++|||+|||. ++|+++|+++|++||.|.+|.+. +|+|||+|.+.++|.+|++.+++. .++|++|+|+++..
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQE--MNFGKKLILEVSSS 94 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTS--EETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEecCC
Confidence 46889999999998 99999999999999999999984 789999999999999999999998 89999999999765
Q ss_pred c
Q 013267 81 Q 81 (446)
Q Consensus 81 ~ 81 (446)
.
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 186
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=121.85 Aligned_cols=77 Identities=13% Similarity=0.244 Sum_probs=72.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC-----CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK-----NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~-----~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.++ |+|||+|.+.++|.+|++.|++. .++|++|+|.+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGM--TIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTE--ESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEE
Confidence 467899999999999999999999999999999999865 89999999999999999999988 89999999999
Q ss_pred cccc
Q 013267 78 SSHQ 81 (446)
Q Consensus 78 ~~~~ 81 (446)
+.+.
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 187
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=7.7e-17 Score=124.52 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=76.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.+.++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++. |+..|.|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 457899999999999999999999999999999998753 278999999999999999999 999999999999999
Q ss_pred cCcccccc
Q 013267 437 QLQSIREN 444 (446)
Q Consensus 437 ~~~~~~~~ 444 (446)
+++..++.
T Consensus 93 ~~~~~~~~ 100 (105)
T 2dh8_A 93 TPRGMQPS 100 (105)
T ss_dssp CCSSCCTT
T ss_pred cCCCCCCC
Confidence 98876654
No 188
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=125.58 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.+.++|||+|||.++|+++|+++|++||.|.+++++.++ .+|||||+|.+.++|++|++.+|+ .+.|+.|+|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 457899999999999999999999999999999998653 378999999999999999999999 899999999999
Q ss_pred cCcccc
Q 013267 437 QLQSIR 442 (446)
Q Consensus 437 ~~~~~~ 442 (446)
++....
T Consensus 94 ~~~~~~ 99 (116)
T 2cqd_A 94 YLGAKP 99 (116)
T ss_dssp TTTCCC
T ss_pred ccCCCc
Confidence 775443
No 189
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=1.5e-16 Score=122.85 Aligned_cols=79 Identities=27% Similarity=0.422 Sum_probs=73.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecC---eEeE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRG---RNVY 74 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g---~~i~ 74 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .+.| ++|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS--QTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSC--CCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCC--ccCCCCCccEE
Confidence 46899999999999999999999999999999999987 589999999999999999999998 7887 9999
Q ss_pred EEecccccc
Q 013267 75 VQFSSHQEL 83 (446)
Q Consensus 75 v~~~~~~~~ 83 (446)
|.++.....
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999877543
No 190
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.2e-16 Score=119.00 Aligned_cols=81 Identities=14% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.++++|||+|+ ++|+++|+++|++||.|.++.+. +.+|||||+|.+.++|.+|++.|||..+.|++|+|.|++++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 45789999996 89999999999999999999985 578999999999999999999999999999999999999987
Q ss_pred ccccC
Q 013267 441 IRENS 445 (446)
Q Consensus 441 ~~~~~ 445 (446)
.+...
T Consensus 89 ~~~~~ 93 (97)
T 1x5p_A 89 MLDSG 93 (97)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 66543
No 191
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=1.6e-16 Score=124.95 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=73.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
+++++|||+|||.++|+++|+++|++||.|.+|+++.++ +||||+|.+.++|.+|++.||+. .++|++|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~ 100 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF--QIGMKRLKVQ 100 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC--EECCEEEEEE
Confidence 467899999999999999999999999999999999774 79999999999999999999998 8999999999
Q ss_pred ecccccc
Q 013267 77 FSSHQEL 83 (446)
Q Consensus 77 ~~~~~~~ 83 (446)
++.+...
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9877544
No 192
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=2e-16 Score=122.40 Aligned_cols=75 Identities=20% Similarity=0.374 Sum_probs=71.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++ +|+|||+|.+.++|.+|++.|++. .++|++|.|+++.+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGK--SFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTC--EETTEECEEESCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEecCC
Confidence 467999999999999999999999999999999999 889999999999999999999998 899999999998764
No 193
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=120.42 Aligned_cols=77 Identities=18% Similarity=0.332 Sum_probs=72.0
Q ss_pred CCceEEEEcCCCCCCCHHHHH----HhccCccceeEEEEEcc---CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 3 EPSKVIHVRNVGHEISENDLL----QLFQPFGVITKLVMLRA---KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~----~~f~~~G~i~~~~i~~~---~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
.+.++|||+|||.++|+++|+ ++|++||.|.+|+++.+ +++|||+|.+.++|++|++.+|+. .++|++|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~--~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRY--KIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTE--EETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCC--EECCeEEEE
Confidence 356789999999999999999 99999999999999977 799999999999999999999998 899999999
Q ss_pred Eecccc
Q 013267 76 QFSSHQ 81 (446)
Q Consensus 76 ~~~~~~ 81 (446)
+++.+.
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 998664
No 194
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.67 E-value=1.7e-16 Score=118.67 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=71.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
+++|||+|||.++++++|+++|++||.|.++.+..++ .+|+|||+|.+.++|.+|+ .+||..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4799999999999999999999999999999998653 3889999999999999999 9999999999999999987
Q ss_pred cc
Q 013267 439 QS 440 (446)
Q Consensus 439 ~~ 440 (446)
+.
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 195
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=121.60 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=71.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
++.++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|++|++.|||..+.|+.|+|.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 346899999999999999999999999999887776542 2789999999999999999999999999999999999
Q ss_pred cCc
Q 013267 437 QLQ 439 (446)
Q Consensus 437 ~~~ 439 (446)
+.+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 865
No 196
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=124.02 Aligned_cols=80 Identities=15% Similarity=0.331 Sum_probs=74.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC-----CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK-----NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~-----~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.++ |+|||+|.+.++|++|++.|++. .++|++|+|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~--~~~g~~l~V~~ 82 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGK--SLHGKAIKVEQ 82 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSC--BCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEE
Confidence 467899999999999999999999999999999999875 99999999999999999999998 89999999999
Q ss_pred ccccccc
Q 013267 78 SSHQELT 84 (446)
Q Consensus 78 ~~~~~~~ 84 (446)
+.+....
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876543
No 197
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=1.8e-16 Score=121.91 Aligned_cols=79 Identities=22% Similarity=0.438 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~ 82 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.+++ ++|||+|.+.++|.+|++.|++. .++|++|+|.++.+..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--DYAFIHFDERDGAVKAMEEMNGK--DLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESSHHHHHHHHHHHTTE--EETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CEEEEEeCCHHHHHHHHHHHCCC--ccCCCEEEEEEcCCCc
Confidence 4678999999999999999999999999999999885 59999999999999999999998 8999999999997765
Q ss_pred ccc
Q 013267 83 LTT 85 (446)
Q Consensus 83 ~~~ 85 (446)
...
T Consensus 85 ~~~ 87 (103)
T 2dgu_A 85 QKR 87 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 198
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=121.81 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=70.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
+.++|||+|||.++|+++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++ +++..+.|+.|.|.+++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 45899999999999999999999999999999998653 38899999999999999999 999999999999999876
No 199
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=1.9e-16 Score=126.72 Aligned_cols=83 Identities=23% Similarity=0.258 Sum_probs=75.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
..++++|||+|||.++|+++|+++|+.||.|.++.++.++ .+|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3457899999999999999999999999999999998553 278999999999999999999999999999999999
Q ss_pred ecCcccc
Q 013267 436 SQLQSIR 442 (446)
Q Consensus 436 a~~~~~~ 442 (446)
++++..+
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9887654
No 200
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.7e-17 Score=121.06 Aligned_cols=77 Identities=22% Similarity=0.244 Sum_probs=71.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++++++|+++|++||.|.++.+..++ .+|||||+|.+.++|.+|++.|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467899999999999999999999999999999998653 2789999999999999999999999999999998876
Q ss_pred c
Q 013267 437 Q 437 (446)
Q Consensus 437 ~ 437 (446)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 201
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=124.14 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=75.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCee--------EEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV--------NTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGG 428 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~--------~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g 428 (446)
.++++|||+|||.++++++|+++|++||.|. .++++.++ .+|||||+|.+.++|.+|++.|||..+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4578999999999999999999999999999 68887652 27899999999999999999999999999
Q ss_pred CeEEEEeecCccccc
Q 013267 429 SIIRISFSQLQSIRE 443 (446)
Q Consensus 429 ~~l~v~~a~~~~~~~ 443 (446)
+.|+|.|++++....
T Consensus 93 ~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 93 SKLKVSLARKKPPMN 107 (113)
T ss_dssp EECEEECSSCCCCST
T ss_pred CEEEEEECCCCCCCC
Confidence 999999999876543
No 202
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=1.4e-16 Score=123.64 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=73.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++.+ +..+.|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 457899999999999999999999999999999998653 3789999999999999999987 49999999999999
Q ss_pred cCcccccc
Q 013267 437 QLQSIREN 444 (446)
Q Consensus 437 ~~~~~~~~ 444 (446)
+++..+++
T Consensus 102 ~~~~~~~k 109 (109)
T 2rs2_A 102 FPRRAQPK 109 (109)
T ss_dssp CCCCCCCC
T ss_pred cCCCCCCC
Confidence 99876653
No 203
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=1.7e-16 Score=120.64 Aligned_cols=79 Identities=25% Similarity=0.490 Sum_probs=72.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHH----HhccCccceeEEEEEc---cCCeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 2 TEPSKVIHVRNVGHEISENDLL----QLFQPFGVITKLVMLR---AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~----~~f~~~G~i~~~~i~~---~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
.+|+++|||+|||.++|+++|+ ++|++||.|.+|.+.+ .+|+|||+|.+.++|.+|++.|++. .++|++|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF--PFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCC--EECCcEEE
Confidence 3688999999999999999999 9999999999999983 4799999999999999999999998 89999999
Q ss_pred EEeccccc
Q 013267 75 VQFSSHQE 82 (446)
Q Consensus 75 v~~~~~~~ 82 (446)
|+++.+..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99987754
No 204
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=123.01 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=72.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
.+++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.+++. .++|++|+|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~--~i~g~~l~V 100 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF--ELAGRPMKV 100 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC--CSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEE
Confidence 357899999999999999999999999999999999876 379999999999999999999998 899999999
Q ss_pred Eecccc
Q 013267 76 QFSSHQ 81 (446)
Q Consensus 76 ~~~~~~ 81 (446)
+++.++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998764
No 205
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=120.13 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=71.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
..++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|+..|++. .++|++|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v 89 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM--ELDGRRIRV 89 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE--EETTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC--EECCEEEEE
Confidence 357899999999999999999999999999999999865 379999999999999999999988 899999999
Q ss_pred Eeccc
Q 013267 76 QFSSH 80 (446)
Q Consensus 76 ~~~~~ 80 (446)
+++..
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99754
No 206
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=117.42 Aligned_cols=77 Identities=16% Similarity=0.318 Sum_probs=70.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEc-------cCCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR-------AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~-------~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
..+++|||+|||.++|+++|+++|++||.|.+|.+.. .+|+|||+|.+.++|.+|++.||+. .++|++|+|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v 79 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG--QIDGQEITA 79 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC--EETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC--eECCeEEEE
Confidence 4578999999999999999999999999999999865 4589999999999999999999998 899999999
Q ss_pred Eecccc
Q 013267 76 QFSSHQ 81 (446)
Q Consensus 76 ~~~~~~ 81 (446)
+++.+.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998653
No 207
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=118.58 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=71.4
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
..++++|||+|||.++|+++|+++|++||.|.+|.++++ +|||+|.+.++|.+|++.|++. .++|++|+|+++.+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFVHMEKEADAKAAIAQLNGK--EVKGKRINVELSTKG 81 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--CEEEEESCHHHHHHHHHHHTTC--EETTEECEEEESCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--EEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEECCCC
Confidence 357899999999999999999999999999999999865 9999999999999999999998 899999999998765
No 208
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.1e-17 Score=121.11 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=69.8
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccc-eeEEEEEccCCeEEEEecChhHHHHHHHhhcc-CCceecCeEeEEEecc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGV-ITKLVMLRAKNQALLQMQDVPSAINALQFYTN-VQPTIRGRNVYVQFSS 79 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~-i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~-~~~~~~g~~i~v~~~~ 79 (446)
..++++|||+|||.++|+++|+++|++||. |..+.+ ..+++|||+|.+.++|.+|++.||+ . .++|++|+|+++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~--~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKV--ELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTC--EETTEECEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCe--eECCEEEEEEEcc
Confidence 457889999999999999999999999999 555544 5689999999999999999999998 7 8999999999987
Q ss_pred ccc
Q 013267 80 HQE 82 (446)
Q Consensus 80 ~~~ 82 (446)
+..
T Consensus 82 ~~~ 84 (93)
T 2cqh_A 82 SKK 84 (93)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
No 209
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.3e-16 Score=118.88 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=74.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
..+.++|||+|||.++++++|+++|++||.|.++.++.++. +|||||+|.+.++|.+|++ ++..+.|+.|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 34678999999999999999999999999999999986532 7899999999999999998 57789999999999
Q ss_pred ecCccccccC
Q 013267 436 SQLQSIRENS 445 (446)
Q Consensus 436 a~~~~~~~~~ 445 (446)
++++...+.+
T Consensus 90 a~~~~~~~~~ 99 (103)
T 2cqg_A 90 PNSKQSQDSG 99 (103)
T ss_dssp CCTTCCCCCS
T ss_pred cCCCCcCCCC
Confidence 9998765543
No 210
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=6.9e-16 Score=121.07 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=71.0
Q ss_pred CCccE--EEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceE-EEEEeCCHHHHHHHHHHhCCCccCC--CeEEEEe
Q 013267 361 SPTKM--IHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQ-ALVLFETEEQATEALVCKHASSLGG--SIIRISF 435 (446)
Q Consensus 361 ~~~~~--l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~-~fV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~ 435 (446)
+|+++ |||+||+..+|+++|+++|++||.|.++.++. + .|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 45666 56899999999999999999999999999975 3 485 9999999999999999999999987 6999999
Q ss_pred ecCccc
Q 013267 436 SQLQSI 441 (446)
Q Consensus 436 a~~~~~ 441 (446)
|+++..
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 999853
No 211
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=2.9e-16 Score=116.86 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=72.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~ 82 (446)
.++++|||+|||+++|+++|+++|++| .|.+|++.+.+|+|||+|.+.++|.+|++.+|+. .++|++|+|+++..+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQY--SFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTE--EETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCC--eECCcEEEEEEcCCCc
Confidence 567899999999999999999999999 9999999888999999999999999999999998 8999999999986654
No 212
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=121.88 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=71.5
Q ss_pred CccEEEEeCCCCCC------CHHHHHHHhhccCCeeEEEEEeeCC--ceEEEEEeCCHHHHHHHHHHhCCCccCCC-eEE
Q 013267 362 PTKMIHLSTLPQDV------TEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGS-IIR 432 (446)
Q Consensus 362 ~~~~l~v~nlp~~~------t~~~l~~~F~~~G~v~~~~i~~~~~--~g~~fV~f~~~~~A~~A~~~l~~~~~~g~-~l~ 432 (446)
.+++|||+|||..+ |+++|+++|++||.|.++.+.+..+ +|||||+|.+.++|.+|++.|||..+.|+ .|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 46899999999999 7899999999999999999984433 78999999999999999999999999998 999
Q ss_pred EEeecCc
Q 013267 433 ISFSQLQ 439 (446)
Q Consensus 433 v~~a~~~ 439 (446)
|.+++..
T Consensus 94 V~~a~~~ 100 (105)
T 2nlw_A 94 VNLFTDF 100 (105)
T ss_dssp EECSCCC
T ss_pred EEEcchH
Confidence 9999754
No 213
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.9e-16 Score=120.00 Aligned_cols=76 Identities=20% Similarity=0.411 Sum_probs=70.3
Q ss_pred CCceEEEEcCCCC-CCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecccc
Q 013267 3 EPSKVIHVRNVGH-EISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 3 ~~s~~l~v~~lp~-~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~ 81 (446)
+|+++|||+|||. ++|+++|+++|++||.|.+|.+. +|+|||+|.+.++|.+|++.|++. .+.|++|+|+++...
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQE--MNFGKKLILEVSSSN 83 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCS--SCBTTTBCEEEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCC--eeCCcEEEEEEcCcC
Confidence 5889999999998 99999999999999999999986 789999999999999999999998 799999999998664
Q ss_pred c
Q 013267 82 E 82 (446)
Q Consensus 82 ~ 82 (446)
.
T Consensus 84 ~ 84 (96)
T 2kvi_A 84 A 84 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 214
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.4e-16 Score=121.22 Aligned_cols=80 Identities=16% Similarity=0.270 Sum_probs=72.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC---ceEEEEEeCCHHHHHHHHHHhCCCcc--------CCC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSL--------GGS 429 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~---~g~~fV~f~~~~~A~~A~~~l~~~~~--------~g~ 429 (446)
.+.++|||+|||.++++++|+++|++||.|.++.++.++. +|||||+|.+.++|.+|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4568999999999999999999999999999999986532 78999999999999999999999999 578
Q ss_pred eEEEEeecCcc
Q 013267 430 IIRISFSQLQS 440 (446)
Q Consensus 430 ~l~v~~a~~~~ 440 (446)
+|.|.|++++.
T Consensus 103 ~l~v~~a~p~~ 113 (114)
T 1x5o_A 103 PLLCKFSGPSS 113 (114)
T ss_dssp CBEEEECCCSC
T ss_pred ceeEEccCCCC
Confidence 89999999753
No 215
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.5e-16 Score=119.43 Aligned_cols=77 Identities=16% Similarity=0.328 Sum_probs=70.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
.++++|||+|||.++|+++|+++|++|| |.+|.++.+ +|+|||+|.+.++|.+|+ .+++. .++|++|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~--~~~g~~l~V 88 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE--SLGNKRIRV 88 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC--EETTEECEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC--EeCCcEEEE
Confidence 4779999999999999999999999999 999999865 479999999999999999 89988 899999999
Q ss_pred Eecccccc
Q 013267 76 QFSSHQEL 83 (446)
Q Consensus 76 ~~~~~~~~ 83 (446)
+++.+...
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99877543
No 216
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=121.51 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=73.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.++ |+|||+|.+.++|.+|++.|++. .++|++|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~ 90 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI--KLYGKPIRVN 90 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC--BCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEE
Confidence 467899999999999999999999999999999998763 79999999999999999999998 8999999999
Q ss_pred ecccccc
Q 013267 77 FSSHQEL 83 (446)
Q Consensus 77 ~~~~~~~ 83 (446)
++.+...
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9877544
No 217
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=2.2e-16 Score=123.04 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=71.2
Q ss_pred CCccEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 361 SPTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 361 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
.++++|||+|||.+ +++++|+++|++||.|.++.+ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.|++++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 45689999999999 999999999999999999999 4899999999999999999999999999999999999854
Q ss_pred c
Q 013267 440 S 440 (446)
Q Consensus 440 ~ 440 (446)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 218
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=115.41 Aligned_cols=77 Identities=23% Similarity=0.478 Sum_probs=70.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEE
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 324 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~ 324 (446)
.+++++|||+|||+ .+++++|+++|+.||.|..+.+..+. +|+|||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 13 ~~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 13 APSKSTVYVSNLPF-SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCTTSEEEESCCT-TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCC-CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34566999999996 79999999999999999999998764 6799999999999999999999999999999999
Q ss_pred Eec
Q 013267 325 FSK 327 (446)
Q Consensus 325 ~~~ 327 (446)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 219
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=122.96 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=72.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhc------cCCceecC
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYT------NVQPTIRG 70 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~------~~~~~~~g 70 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|+..++ +. .++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~--~~~g 90 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL--KLDG 90 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE--ESSS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc--EEcC
Confidence 47899999999999999999999999999999999865 5899999999999999999999 66 8999
Q ss_pred eEeEEEecccccc
Q 013267 71 RNVYVQFSSHQEL 83 (446)
Q Consensus 71 ~~i~v~~~~~~~~ 83 (446)
++|+|.++.+...
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999876543
No 220
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=7.3e-17 Score=123.27 Aligned_cols=78 Identities=29% Similarity=0.323 Sum_probs=70.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC-----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN-----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~-----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
.+.++|||+|||.++++++|+++|+.|| |.++.+..++ .+|||||+|.+.++|.+|+ .|||..+.|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4578999999999999999999999999 9999998654 3789999999999999999 9999999999999999
Q ss_pred ecCcc
Q 013267 436 SQLQS 440 (446)
Q Consensus 436 a~~~~ 440 (446)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98864
No 221
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=3.5e-16 Score=121.91 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=72.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|+..|++. .++|++|+|.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~ 101 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA--EIMGQTIQVD 101 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEE
Confidence 46789999999999999999999999999999999876 489999999999999999999998 8999999999
Q ss_pred ecccc
Q 013267 77 FSSHQ 81 (446)
Q Consensus 77 ~~~~~ 81 (446)
++.+.
T Consensus 102 ~a~~~ 106 (110)
T 1oo0_B 102 WCFVK 106 (110)
T ss_dssp ESEES
T ss_pred EcccC
Confidence 98664
No 222
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=8.7e-17 Score=117.75 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=65.4
Q ss_pred ccEEEEeCCCCCC------CHHHHHHHhhccCCeeEEEEEeeCC--ceEEEEEeCCHHHHHHHHHHhCCCccCCC-eEEE
Q 013267 363 TKMIHLSTLPQDV------TEEEIVSHLEEHGSIVNTKLFEMNG--KKQALVLFETEEQATEALVCKHASSLGGS-IIRI 433 (446)
Q Consensus 363 ~~~l~v~nlp~~~------t~~~l~~~F~~~G~v~~~~i~~~~~--~g~~fV~f~~~~~A~~A~~~l~~~~~~g~-~l~v 433 (446)
+++|||+|||..+ ++++|+++|++||.|.++.+.+..+ +|||||+|.+.++|.+|++.|||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 7899999999999999999875433 78999999999999999999999999999 8876
Q ss_pred E
Q 013267 434 S 434 (446)
Q Consensus 434 ~ 434 (446)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 223
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=122.11 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=71.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|+..|++. .++|++|+|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~ 98 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ--DLMGQPISVD 98 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC--BSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC--EECCcEEEEE
Confidence 46789999999999999999999999999999999876 489999999999999999999998 8999999999
Q ss_pred ecccc
Q 013267 77 FSSHQ 81 (446)
Q Consensus 77 ~~~~~ 81 (446)
++.++
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98654
No 224
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=6.6e-16 Score=128.40 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=74.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.++. +|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4678999999999999999999999999999999986642 789999999999999999999999999999999999
Q ss_pred cCccc
Q 013267 437 QLQSI 441 (446)
Q Consensus 437 ~~~~~ 441 (446)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87654
No 225
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.5e-16 Score=121.22 Aligned_cols=77 Identities=14% Similarity=0.286 Sum_probs=72.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
+++++|||+|||.++|+++|+++|++||.|.+|.++.+ +++|||+|.+.++|.+|++.|++. .++|++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~ 90 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ--LLFDRPMHVKM 90 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC--EeCCCEEEEEE
Confidence 57889999999999999999999999999999999987 589999999999999999999998 89999999999
Q ss_pred cccc
Q 013267 78 SSHQ 81 (446)
Q Consensus 78 ~~~~ 81 (446)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8654
No 226
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=4.4e-16 Score=120.73 Aligned_cols=75 Identities=24% Similarity=0.434 Sum_probs=70.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|++|++.|++. .+.|++|+|++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~ 104 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV--PLDGRPMNIQL 104 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEE
Confidence 47899999999999999999999999999999999966 589999999999999999999998 89999999998
Q ss_pred cc
Q 013267 78 SS 79 (446)
Q Consensus 78 ~~ 79 (446)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 227
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=6.9e-16 Score=114.69 Aligned_cols=75 Identities=13% Similarity=0.265 Sum_probs=68.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.+.++|||+|||.++++++|+++|++||.|.++.++.++. +|||||+|.+.++|.+|++ +++..+.|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999986543 7899999999999999995 5888899999999986
No 228
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-16 Score=124.74 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=73.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
+++|||+|||.++++++|+++|+.||.|.++.++.++ .+|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 5799999999999999999999999999999998543 3789999999999999999 9999999999999999998
Q ss_pred ccccc
Q 013267 439 QSIRE 443 (446)
Q Consensus 439 ~~~~~ 443 (446)
+..+.
T Consensus 104 ~~~~~ 108 (114)
T 2cq4_A 104 EKNRL 108 (114)
T ss_dssp HHHHH
T ss_pred CccCC
Confidence 76554
No 229
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=120.96 Aligned_cols=78 Identities=12% Similarity=0.269 Sum_probs=72.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCcccee-EEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeE--
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVIT-KLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRN-- 72 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~-~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~-- 72 (446)
..++++|||+|||+++|+++|+++|++||.|. +|++++++ |||||+|.+.++|++|++.||+. .+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~~~ 83 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK--PLPGATPA 83 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS--EESSCSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC--ccCCCCcc
Confidence 45789999999999999999999999999999 99999875 89999999999999999999998 899999
Q ss_pred --eEEEecccc
Q 013267 73 --VYVQFSSHQ 81 (446)
Q Consensus 73 --i~v~~~~~~ 81 (446)
|+|+|+.+.
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999998764
No 230
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=122.95 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=73.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccC-ccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCce-ecCeEeE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQP-FGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPT-IRGRNVY 74 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~-~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~-~~g~~i~ 74 (446)
..++++|||+|||.++|+++|+++|++ ||.|.+|.++.+ +|||||+|.+.++|.+|++.+++. . ++|++|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~~g~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA--VGLGSKPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTC--CSSSSSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCC--cccCCEeEE
Confidence 357899999999999999999999999 999999999986 589999999999999999999998 7 9999999
Q ss_pred EEeccccccc
Q 013267 75 VQFSSHQELT 84 (446)
Q Consensus 75 v~~~~~~~~~ 84 (446)
|+++.+....
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9998765443
No 231
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=2.9e-16 Score=116.89 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=71.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.+++|||+|||.++++++|+++|++| .|.++.+. +.+|||||+|.+.++|++|++.|||..+.|++|+|.|++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 45799999999999999999999999 99999884 579999999999999999999999999999999999998764
No 232
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.6e-16 Score=115.50 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=71.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC---ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~---~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
...++|||+|||.++++++|+++|+.| .|.++.++.+.. +|+|||+|.+.++|.+|++ |||..+.|+.|.|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 346899999999999999999999999 999999986532 7899999999999999999 99999999999999998
Q ss_pred Cc
Q 013267 438 LQ 439 (446)
Q Consensus 438 ~~ 439 (446)
++
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 87
No 233
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=6.3e-17 Score=121.22 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=68.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
++|||+|||.++++++|+++|++||.|.++.+..++ .+|||||+|.+.+ |.+|++.|||..+.|+.|+|.+|+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999998553 3889999999999 99999999999999999999999988
Q ss_pred ccccc
Q 013267 440 SIREN 444 (446)
Q Consensus 440 ~~~~~ 444 (446)
...+.
T Consensus 81 ~~~~~ 85 (90)
T 2ki2_A 81 KSLEH 85 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 76543
No 234
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=118.41 Aligned_cols=80 Identities=33% Similarity=0.436 Sum_probs=73.2
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC--CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
..++++|||+|||+ .+++++|+++|+.||.|..|++..+. +++|||+|.+.++|..|++.|||..|.|+.|+|.|++
T Consensus 19 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPP-DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 44567999999996 79999999999999999999997764 7899999999999999999999999999999999998
Q ss_pred CCC
Q 013267 328 HPN 330 (446)
Q Consensus 328 ~~~ 330 (446)
+..
T Consensus 98 ~~~ 100 (109)
T 1x4a_A 98 SGR 100 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 235
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7e-16 Score=117.67 Aligned_cols=76 Identities=17% Similarity=0.336 Sum_probs=70.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCc--cceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPF--GVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~--G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
.++++|||+|||.++|+++|+++|++| |.|.+|.+. +++|||+|.+.++|.+|+..||+. .++|++|+|+++.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGK--VLDGSPIEVTLAKP 88 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSE--EETTEEEEEECCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCC--EeCCcEEEEEECCC
Confidence 578999999999999999999999999 889988876 569999999999999999999998 89999999999876
Q ss_pred cc
Q 013267 81 QE 82 (446)
Q Consensus 81 ~~ 82 (446)
..
T Consensus 89 ~~ 90 (99)
T 2cpd_A 89 VD 90 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 236
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.3e-16 Score=121.20 Aligned_cols=81 Identities=7% Similarity=0.167 Sum_probs=72.6
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccc-eeEEEEE-------ccCCeEEEEecChhHHHHHHHhhc--cCCceecCe
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGV-ITKLVML-------RAKNQALLQMQDVPSAINALQFYT--NVQPTIRGR 71 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~-i~~~~i~-------~~~~~afV~F~~~~~A~~A~~~~~--~~~~~~~g~ 71 (446)
+.++++|||+|||.++|+++|+++|++||. |.+|.++ +.+|||||+|.+.++|.+|++.|+ +. .++|+
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~--~~~g~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRI--QLWGH 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCS--CBTTB
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCc--eecCC
Confidence 357899999999999999999999999998 9999998 346999999999999999999996 35 79999
Q ss_pred EeEEEeccccccc
Q 013267 72 NVYVQFSSHQELT 84 (446)
Q Consensus 72 ~i~v~~~~~~~~~ 84 (446)
+|+|+++.+....
T Consensus 83 ~l~V~~a~~~~~~ 95 (109)
T 2dis_A 83 QIAVDWAEPEIDV 95 (109)
T ss_dssp CCEEEESCSSCST
T ss_pred eEEEEEcCCCCCc
Confidence 9999999876543
No 237
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=2.6e-16 Score=121.49 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=70.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCcc-ceeEEEEEc--cCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFG-VITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G-~i~~~~i~~--~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
++...+|||+|||+++|+++|+++|++|| .|..+.+.. .+|||||+|.+.++|.+|++.||+. .++|++|+|+++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~--~l~Gr~i~V~~a 102 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNI--EFRGSVITVERD 102 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTE--EETTEEEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEC
Confidence 34567999999999999999999999999 899999863 4799999999999999999999998 899999999997
Q ss_pred cc
Q 013267 79 SH 80 (446)
Q Consensus 79 ~~ 80 (446)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 238
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=3.5e-16 Score=119.34 Aligned_cols=76 Identities=21% Similarity=0.478 Sum_probs=70.4
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeE--------EEEEcc------CCeEEEEecChhHHHHHHHhhccCCce
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITK--------LVMLRA------KNQALLQMQDVPSAINALQFYTNVQPT 67 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~--------~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~ 67 (446)
.++.++|||+|||.++|+++|+++|++||.|.+ |+++.+ +|+|||+|.+.++|++|++.|++. .
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~--~ 87 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK--E 87 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC--B
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC--E
Confidence 357899999999999999999999999999999 999876 379999999999999999999998 8
Q ss_pred ecCeEeEEEecc
Q 013267 68 IRGRNVYVQFSS 79 (446)
Q Consensus 68 ~~g~~i~v~~~~ 79 (446)
++|++|+|+++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999863
No 239
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=118.55 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=69.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
+.++++|||+|||+++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.||+. .++|+.+++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~~~~ 79 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS--GVQAQMAKQ 79 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHH--TCCEESCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCC--eEeeEEEee
Confidence 578999999999999999999999999999999999876 589999999999999999999998 799998887
Q ss_pred Eec
Q 013267 76 QFS 78 (446)
Q Consensus 76 ~~~ 78 (446)
+++
T Consensus 80 ~~~ 82 (85)
T 1x4e_A 80 SGP 82 (85)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 240
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=121.51 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=73.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEE-ee----CCceEEEEEeCCHHHHHHHHHHhC--CCccCCCeEE
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGS-IVNTKLF-EM----NGKKQALVLFETEEQATEALVCKH--ASSLGGSIIR 432 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-v~~~~i~-~~----~~~g~~fV~f~~~~~A~~A~~~l~--~~~~~g~~l~ 432 (446)
.+.++|||+|||.++++++|+++|++||. |.++.++ .+ +.+|||||+|.+.++|.+|++.|| +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999987 33 348899999999999999999996 5899999999
Q ss_pred EEeecCccc
Q 013267 433 ISFSQLQSI 441 (446)
Q Consensus 433 v~~a~~~~~ 441 (446)
|.|++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999998765
No 241
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=120.94 Aligned_cols=79 Identities=27% Similarity=0.305 Sum_probs=70.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee---CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM---NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
.++++|||+|||.++++++|+++|++||.| +++.+ +.+|||||+|.+.++|++|++.||+..+.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 467899999999999999999999999988 34332 338899999999999999999999999999999999999
Q ss_pred Ccccc
Q 013267 438 LQSIR 442 (446)
Q Consensus 438 ~~~~~ 442 (446)
++...
T Consensus 90 ~~~~~ 94 (101)
T 2fc9_A 90 PRGSP 94 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 242
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-16 Score=124.45 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=74.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCe-eEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSI-VNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v-~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.+.++|||+|||.++|+++|+++|+.||.| .+++++.++ .+|||||+|.+.++|.+|++. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356899999999999999999999999999 889987543 388999999999999999987 999999999999999
Q ss_pred cCccccc
Q 013267 437 QLQSIRE 443 (446)
Q Consensus 437 ~~~~~~~ 443 (446)
+++.+++
T Consensus 92 ~~~~~~~ 98 (114)
T 2cpy_A 92 TLEDMRE 98 (114)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9887543
No 243
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=2.3e-16 Score=119.69 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=71.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.++++|||+|||..+++++|+++|++||.|..+ ....+.+|||||+|.+.++|.+|++.|||..+.|+.|+|.|++++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 457899999999999999999999999999877 2222238899999999999999999999999999999999998875
Q ss_pred c
Q 013267 441 I 441 (446)
Q Consensus 441 ~ 441 (446)
.
T Consensus 93 ~ 93 (96)
T 1fjc_A 93 G 93 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 244
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=5.2e-16 Score=115.93 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=69.3
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.+++|||+|||.++|+++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|+ .+++. .++|++|+|++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~--~~~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES--LFRGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC--EETTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC--EECCcEEEEEE
Confidence 4689999999999999999999999999999999876 589999999999999999 89988 89999999999
Q ss_pred ccc
Q 013267 78 SSH 80 (446)
Q Consensus 78 ~~~ 80 (446)
+.+
T Consensus 82 a~~ 84 (89)
T 3ucg_A 82 KRT 84 (89)
T ss_dssp TTT
T ss_pred ccC
Confidence 765
No 245
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.4e-16 Score=121.05 Aligned_cols=79 Identities=19% Similarity=0.400 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCcccee--------EEEEEcc------CCeEEEEecChhHHHHHHHhhccCCcee
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVIT--------KLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTI 68 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~--------~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~ 68 (446)
.++++|||+|||.++|+++|+++|++||.|. .|+++.+ +|+|||+|.+.++|.+|++.|++. .+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~ 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK--DF 90 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC--EE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC--cc
Confidence 3678999999999999999999999999998 6999876 489999999999999999999998 89
Q ss_pred cCeEeEEEecccccc
Q 013267 69 RGRNVYVQFSSHQEL 83 (446)
Q Consensus 69 ~g~~i~v~~~~~~~~ 83 (446)
+|++|+|.++.+...
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999877543
No 246
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.2e-15 Score=117.33 Aligned_cols=78 Identities=22% Similarity=0.358 Sum_probs=70.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
..++++|||+|||.++|+++|+++|++|| |.+|.++.++ |+|||+|.+.++|.+|+ .|++. .++|++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~--~~~g~~l~V 87 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA--LLGDRSLRV 87 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC--EETTEECEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC--eECCeEEEE
Confidence 35789999999999999999999999997 9999999763 79999999999999999 79988 899999999
Q ss_pred Eecccccc
Q 013267 76 QFSSHQEL 83 (446)
Q Consensus 76 ~~~~~~~~ 83 (446)
+++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99876543
No 247
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=1.6e-15 Score=119.77 Aligned_cols=77 Identities=23% Similarity=0.414 Sum_probs=70.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEE
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 324 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~ 324 (446)
.+++++|||+|||. .+++++|+++|+.||.|..|+++.++ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 37 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQ-EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCT-TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45668999999995 79999999999999999999998764 7899999999999999999999999999999999
Q ss_pred Eec
Q 013267 325 FSK 327 (446)
Q Consensus 325 ~~~ 327 (446)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 248
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=5e-16 Score=127.13 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=73.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEE--------EEEe-eCCceEEEEEeCCHHHHHHHHHHhCCCccCCCe
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNT--------KLFE-MNGKKQALVLFETEEQATEALVCKHASSLGGSI 430 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~--------~i~~-~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~ 430 (446)
..++++|||+|||.++|+++|+++|+.||.|..+ .+.. .+.+|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4578999999999999999999999999998763 3332 245899999999999999999999999999999
Q ss_pred EEEEeecCcccccc
Q 013267 431 IRISFSQLQSIREN 444 (446)
Q Consensus 431 l~v~~a~~~~~~~~ 444 (446)
|+|.||++...++.
T Consensus 122 l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 122 MVVQFARSARPKQD 135 (143)
T ss_dssp CEEEECCCSCC---
T ss_pred EEEEECCCCCCccC
Confidence 99999988766554
No 249
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=4.3e-16 Score=120.54 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=72.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCcee---cCeE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTI---RGRN 72 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~---~g~~ 72 (446)
..++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.|++. .+ .|++
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~~~~g~~ 87 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ--KTLPGMNRP 87 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT--CCCTTCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC--cccCCCCce
Confidence 357899999999999999999999999999999999875 489999999999999999999998 55 8999
Q ss_pred eEEEecccccc
Q 013267 73 VYVQFSSHQEL 83 (446)
Q Consensus 73 i~v~~~~~~~~ 83 (446)
|+|.++.....
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999877543
No 250
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=115.59 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=71.7
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~ 82 (446)
.++++|||+|| ++|+++|+++|++||.|.+|.+.+.+|+|||+|.+.++|.+|++.|++. .++|++|+|.++.+..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT--QVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTE--EETTEEEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEECCCCC
Confidence 46789999996 8999999999999999999999989999999999999999999999998 8999999999987754
Q ss_pred c
Q 013267 83 L 83 (446)
Q Consensus 83 ~ 83 (446)
.
T Consensus 89 ~ 89 (97)
T 1x5p_A 89 M 89 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 251
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.8e-16 Score=118.95 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=69.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
++.++|||+|||.++|+++|+++|++||.|.++.++.+ +|+|||+|.+.++|++|++.|++. .++|++|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~ 90 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR--PIGSRKVKLV 90 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC--EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC--eeCCeEEEEE
Confidence 46789999999999999999999999999987777654 489999999999999999999998 8999999999
Q ss_pred ecccc
Q 013267 77 FSSHQ 81 (446)
Q Consensus 77 ~~~~~ 81 (446)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 97653
No 252
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=3.9e-16 Score=118.17 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=67.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
+++++|||+|||.++|+++|+++|++||.|.++.++.+ +|+|||+|.+.++|++|++.||+. .++|++|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR--PIGSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC--eECCcEEEEE
Confidence 46789999999999999999999999999988887764 489999999999999999999998 8999999999
Q ss_pred ecc
Q 013267 77 FSS 79 (446)
Q Consensus 77 ~~~ 79 (446)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 865
No 253
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=7.9e-16 Score=119.82 Aligned_cols=75 Identities=13% Similarity=0.258 Sum_probs=70.0
Q ss_pred CceEEEEcCCCCC-CCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccc
Q 013267 4 PSKVIHVRNVGHE-ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (446)
Q Consensus 4 ~s~~l~v~~lp~~-~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~ 82 (446)
++++|||+|||.+ +|+++|+++|++||.|.+|.+ .+++|||+|.+.++|++|++.|++. .++|++|+|+++....
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGR--VLAGQTLDINMAGEPK 101 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTC--EETTEECCEEESCCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECCCCC
Confidence 5589999999999 999999999999999999999 6789999999999999999999998 8999999999987543
No 254
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-16 Score=120.09 Aligned_cols=75 Identities=11% Similarity=0.259 Sum_probs=69.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.++++|||+|||.++|+++|+++|++||+|.+|.++++ +|+|||+|.+.++|.+|+. +++. .++|++|.|.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~--~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQ--KYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCC--CCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCC--EECCEEEEEEE
Confidence 46789999999999999999999999999999999975 5999999999999999999 7776 89999999998
Q ss_pred ccc
Q 013267 78 SSH 80 (446)
Q Consensus 78 ~~~ 80 (446)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 255
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.9e-16 Score=122.85 Aligned_cols=82 Identities=13% Similarity=0.246 Sum_probs=74.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
+.++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++. ++..|.|+.|+|.|++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 35899999999999999999999999999999998653 378999999999999999988 9999999999999999
Q ss_pred Ccccccc
Q 013267 438 LQSIREN 444 (446)
Q Consensus 438 ~~~~~~~ 444 (446)
++.....
T Consensus 105 ~~~~~~~ 111 (116)
T 1x4b_A 105 AREESGS 111 (116)
T ss_dssp SCCCCCC
T ss_pred CCccCCC
Confidence 9876543
No 256
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=2.8e-16 Score=113.21 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=66.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 365 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 365 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
+|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|++|++ +|+..+.|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999998653 27899999999999999998 9999999999999986
No 257
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-16 Score=122.07 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=72.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.+++. .++|++|+|++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR--EFSGRALRVDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB--SCSSSCBEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEe
Confidence 5789999999999999999999999999999999976 489999999999999999999988 79999999999
Q ss_pred cccccc
Q 013267 78 SSHQEL 83 (446)
Q Consensus 78 ~~~~~~ 83 (446)
+.+...
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 877544
No 258
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=4.1e-16 Score=122.81 Aligned_cols=80 Identities=20% Similarity=0.283 Sum_probs=72.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCC---eeEEEEEeeCC---ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGS---IVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~---v~~~~i~~~~~---~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
...++|||+|||.++|+++|+++|+.||. |..++++.++. +|||||+|.+.++|.+|++ +|+..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 35689999999999999999999999999 89999985533 7899999999999999999 99999999999999
Q ss_pred eecCccc
Q 013267 435 FSQLQSI 441 (446)
Q Consensus 435 ~a~~~~~ 441 (446)
+++.+.+
T Consensus 94 ~a~~~~~ 100 (118)
T 2db1_A 94 KSHRTEM 100 (118)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987664
No 259
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=7.5e-16 Score=119.49 Aligned_cols=78 Identities=9% Similarity=0.217 Sum_probs=68.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
..++++|||+|||.++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..++ . .++|++|.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~--~l~g~~l~V 98 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H--ELDSKTIDP 98 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-E--EETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-C--cCCCEEEEE
Confidence 457799999999999999999999999999999999876 4899999999999999999875 4 799999999
Q ss_pred Eeccccc
Q 013267 76 QFSSHQE 82 (446)
Q Consensus 76 ~~~~~~~ 82 (446)
.++.+..
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9987643
No 260
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=4.3e-16 Score=124.99 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=73.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCC---eeEEEEEeeCC---ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGS---IVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~---v~~~~i~~~~~---~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
...++|||+|||.++|+++|+++|++||. |.+++++.++. +|||||+|.+.++|++|++ +|+..++|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 34689999999999999999999999999 88999986532 7899999999999999999 99999999999999
Q ss_pred eecCcccc
Q 013267 435 FSQLQSIR 442 (446)
Q Consensus 435 ~a~~~~~~ 442 (446)
+++++.+.
T Consensus 121 ~a~~~e~~ 128 (136)
T 2hgl_A 121 KSHRTEMD 128 (136)
T ss_dssp ECCHHHHH
T ss_pred ECChHHHH
Confidence 99877654
No 261
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.2e-16 Score=120.49 Aligned_cols=77 Identities=21% Similarity=0.409 Sum_probs=71.9
Q ss_pred CceEEEEcCCCCCCCHHHHH---HhccCccceeEEEEEccC---------CeEEEEecChhHHHHHHHhhccCCceecCe
Q 013267 4 PSKVIHVRNVGHEISENDLL---QLFQPFGVITKLVMLRAK---------NQALLQMQDVPSAINALQFYTNVQPTIRGR 71 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~---~~f~~~G~i~~~~i~~~~---------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~ 71 (446)
++++|||+|||+++|+++|+ ++|++||+|.+|.+++++ |+|||+|.+.++|++|++.||+. .++|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~--~~~gr 91 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV--VVDGR 91 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE--EETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC--EECCE
Confidence 56889999999999999999 999999999999999764 69999999999999999999998 89999
Q ss_pred EeEEEeccccc
Q 013267 72 NVYVQFSSHQE 82 (446)
Q Consensus 72 ~i~v~~~~~~~ 82 (446)
+|+|+++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999988764
No 262
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=1.6e-15 Score=113.95 Aligned_cols=80 Identities=19% Similarity=0.340 Sum_probs=73.1
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC---CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEe
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK---PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFS 326 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~ 326 (446)
.+++++|||+|||. .+++++|+++|+.||.|..+++..+. +|+|||+|.+.++|..|++.|||..+.|+.|+|.|+
T Consensus 5 ~~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPF-DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCT-TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34567999999995 79999999999999999999998743 689999999999999999999999999999999999
Q ss_pred cCCC
Q 013267 327 KHPN 330 (446)
Q Consensus 327 ~~~~ 330 (446)
++..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8764
No 263
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=6.2e-16 Score=123.69 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=73.5
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
..++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.||+. .++|++|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v 96 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ--DLMGQPISV 96 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC--BSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC--eeCCeEEEE
Confidence 346789999999999999999999999999999999877 689999999999999999999998 899999999
Q ss_pred Eecccccc
Q 013267 76 QFSSHQEL 83 (446)
Q Consensus 76 ~~~~~~~~ 83 (446)
+++.+...
T Consensus 97 ~~a~~~~~ 104 (126)
T 3ex7_B 97 DWCFVRGP 104 (126)
T ss_dssp EESEESSS
T ss_pred EEecCCCC
Confidence 99876543
No 264
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=7.3e-16 Score=125.55 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=73.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|+.||.|.+|+++.+ +|+|||+|.+.++|.+|++.|++. .++|++|+|.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~ 117 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF--NILNKRLKVA 117 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE--ECSSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEE
Confidence 35689999999999999999999999999999999876 479999999999999999999998 8999999999
Q ss_pred eccccccc
Q 013267 77 FSSHQELT 84 (446)
Q Consensus 77 ~~~~~~~~ 84 (446)
++.+....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 98876443
No 265
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=3.4e-16 Score=126.29 Aligned_cols=79 Identities=28% Similarity=0.419 Sum_probs=72.1
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEE
Q 013267 251 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 325 (446)
Q Consensus 251 ~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~ 325 (446)
.++++|||+|||. .+++++|+++|+.||.|..|.++.+. +|+|||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 45 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNLTY-RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECCCS-SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456999999996 79999999999999999999998753 78999999999999999999999999999999999
Q ss_pred ecCCC
Q 013267 326 SKHPN 330 (446)
Q Consensus 326 ~~~~~ 330 (446)
+++..
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98763
No 266
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=4.9e-16 Score=115.52 Aligned_cols=73 Identities=18% Similarity=0.383 Sum_probs=69.1
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCc----c-------ceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecC
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPF----G-------VITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRG 70 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~----G-------~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g 70 (446)
+.++++|||+|||.++|+++|+++|++| | .|.++.+.+++|+|||+|.+.++|.+|+ .+++. .++|
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~--~~~g 79 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI--IFQG 79 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTC--EETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCC--EECC
Confidence 4678999999999999999999999999 8 8999999999999999999999999999 99998 8999
Q ss_pred eEeEEEe
Q 013267 71 RNVYVQF 77 (446)
Q Consensus 71 ~~i~v~~ 77 (446)
++|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999973
No 267
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=9.6e-16 Score=113.90 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=66.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||+++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++. ++. .++|++|.|+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~--~~~g~~i~v~ 85 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEH--RLDGRVIDPK 85 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCE--EETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCC--EECCEEEEEE
Confidence 47789999999999999999999999999999999876 37999999999999999975 555 6999999998
Q ss_pred ec
Q 013267 77 FS 78 (446)
Q Consensus 77 ~~ 78 (446)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 268
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=116.79 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=68.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
..++++|||+|||.++|+++|+++|++||.| +++.+ +|+|||+|.+.++|++|+..|++. .++|++|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR--EIEGRAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSE--EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCC--EeCCeEEEEE
Confidence 4578999999999999999999999999977 44443 699999999999999999999998 8999999999
Q ss_pred ecccccc
Q 013267 77 FSSHQEL 83 (446)
Q Consensus 77 ~~~~~~~ 83 (446)
++.+...
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9877543
No 269
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=7.9e-16 Score=122.67 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=72.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
++++|||+|||.++|+++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|+ .|||..+.|+.|+|+|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35899999999999999999999999999999998653 3889999999999999999 899999999999999998
Q ss_pred Cccc
Q 013267 438 LQSI 441 (446)
Q Consensus 438 ~~~~ 441 (446)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7543
No 270
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=127.27 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=73.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeE--EEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCC----ccCCCe
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN--TKLFEMN----GKKQALVLFETEEQATEALVCKHAS----SLGGSI 430 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~----~~~g~~ 430 (446)
.++++|||+|||.++|+++|+++|++||.|.. |+++.++ .+|||||+|.+. +|.+|++.|||. .+.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46789999999999999999999999999977 8888664 388999999999 999999999999 999999
Q ss_pred EEEEeecCccc
Q 013267 431 IRISFSQLQSI 441 (446)
Q Consensus 431 l~v~~a~~~~~ 441 (446)
|+|.|++++..
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999998743
No 271
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7e-16 Score=116.42 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=69.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCccc
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 441 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 441 (446)
..++|||+|||.++|+++|+++|++||.|.++.+....++ ||||+|.+.++|.+|++ |||..+.|+.|.|.+++++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 4579999999999999999999999999999822222234 99999999999999999 999999999999999987765
Q ss_pred cc
Q 013267 442 RE 443 (446)
Q Consensus 442 ~~ 443 (446)
++
T Consensus 85 ~~ 86 (94)
T 2e5g_A 85 QS 86 (94)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 272
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9e-16 Score=118.04 Aligned_cols=82 Identities=27% Similarity=0.319 Sum_probs=72.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeE-EEEEee---CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN-TKLFEM---NGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~-~~i~~~---~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.+.++|||+|||.++|+++|+++|++||.|.+ +.++.+ +.+|||||+|.+.++|++|++. |+..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 35689999999999999999999999999987 777644 2378999999999999999998 999999999999999
Q ss_pred cCccccc
Q 013267 437 QLQSIRE 443 (446)
Q Consensus 437 ~~~~~~~ 443 (446)
+++.+.+
T Consensus 92 ~~~~~~~ 98 (104)
T 1wg5_A 92 SRAEVRT 98 (104)
T ss_dssp CTTTSCC
T ss_pred CHHHHHH
Confidence 8877643
No 273
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=1.9e-16 Score=152.92 Aligned_cols=82 Identities=15% Similarity=0.257 Sum_probs=75.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.+.++|||+|||..+|+++|+++|+.||.|..|.|+.++ .+|||||+|.+.++|.+||+.|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999998542 3889999999999999999999999999999999999
Q ss_pred cCcccc
Q 013267 437 QLQSIR 442 (446)
Q Consensus 437 ~~~~~~ 442 (446)
+++..+
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 987654
No 274
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1e-15 Score=113.91 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=63.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCcc--CCCeEEEEeecC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL--GGSIIRISFSQL 438 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~~a~~ 438 (446)
.+..+|||+|||.++|+++|+++|++||.|.++.++.+ .+|||||+|.+.++|.+ +++..+ .|++|.|.++++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 46789999999999999999999999999999999863 69999999999999984 566654 499999999998
Q ss_pred cccc
Q 013267 439 QSIR 442 (446)
Q Consensus 439 ~~~~ 442 (446)
+..+
T Consensus 84 k~~~ 87 (89)
T 3d2w_A 84 KHNK 87 (89)
T ss_dssp ----
T ss_pred CCcC
Confidence 7654
No 275
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5.9e-16 Score=119.51 Aligned_cols=78 Identities=15% Similarity=0.285 Sum_probs=71.7
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||+++|+++|+++|++||.|.+|.+++++ |||||+|.+.++|.+|+.. ++. .++|++|.|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~--~~~g~~l~V~ 90 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPH--TLDGRNIDPK 90 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSE--EETTEEEBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCC--eECCEEEEEE
Confidence 577999999999999999999999999999999999873 7999999999999999998 776 8999999999
Q ss_pred ecccccc
Q 013267 77 FSSHQEL 83 (446)
Q Consensus 77 ~~~~~~~ 83 (446)
++.+...
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9877554
No 276
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=1.8e-15 Score=115.80 Aligned_cols=83 Identities=25% Similarity=0.402 Sum_probs=72.5
Q ss_pred CCCccEEEEeCCCC-----CCCHHHHHHHhhccCCeeEEEEEee-----CCceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 013267 360 CSPTKMIHLSTLPQ-----DVTEEEIVSHLEEHGSIVNTKLFEM-----NGKKQALVLFETEEQATEALVCKHASSLGGS 429 (446)
Q Consensus 360 ~~~~~~l~v~nlp~-----~~t~~~l~~~F~~~G~v~~~~i~~~-----~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~ 429 (446)
..|+++|+|+||.. +-++++|++.|++||.|.++.|+.+ +++|+|||+|.+.++|.+|++.|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35789999999963 2368999999999999999999864 2489999999999999999999999999999
Q ss_pred eEEEEeecCcccc
Q 013267 430 IIRISFSQLQSIR 442 (446)
Q Consensus 430 ~l~v~~a~~~~~~ 442 (446)
.|+|.|+++....
T Consensus 85 ~i~v~~a~~~~f~ 97 (105)
T 2pe8_A 85 VVKACFYNLDKFR 97 (105)
T ss_dssp ECEEEECCHHHHH
T ss_pred EEEEEEcCHHHhh
Confidence 9999999875443
No 277
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.62 E-value=2.8e-16 Score=117.49 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=65.0
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCcc--ceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFG--VITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G--~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.+|||+|||.++|+++|+++|++|| .|.+|+++.++ |||||+|.+.++|.+|++.||+. .++|++|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~--~~~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR--ELHGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS--CSSSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC--eeCCEEEEEEE
Confidence 4699999999999999999999999 99999998763 79999999999999999999998 89999999999
Q ss_pred ccccc
Q 013267 78 SSHQE 82 (446)
Q Consensus 78 ~~~~~ 82 (446)
+.+..
T Consensus 80 ~~~~~ 84 (90)
T 3p5t_L 80 SNKLE 84 (90)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87643
No 278
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=110.52 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=67.2
Q ss_pred CCCceE-EEEcCCCCCCCHHH----HHHhccCc-cceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 2 TEPSKV-IHVRNVGHEISEND----LLQLFQPF-GVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 2 ~~~s~~-l~v~~lp~~~te~~----l~~~f~~~-G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
.+|+.+ |||+|||.++++++ |+++|++| |+|.+| ..|+|||.|.+.++|++|++.|++. .+.|++|+|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tgG~AfV~F~~~esA~~A~~~l~G~--~l~gr~i~v 78 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TGCSAILRFINQDSAERAQKRMENE--DVFGNRIIV 78 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CTTCEEEEESSHHHHHHHHHHHTTC--CSSSSCCEE
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ecCEEEEEECCHHHHHHHHHHhcCC--ccCCceEEE
Confidence 356766 99999999999988 56899999 599888 2499999999999999999999999 899999999
Q ss_pred Eecccccc
Q 013267 76 QFSSHQEL 83 (446)
Q Consensus 76 ~~~~~~~~ 83 (446)
+|+.....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99987654
No 279
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=3.1e-16 Score=119.67 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=70.6
Q ss_pred CceEEEEcCCCC------CCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecC-
Q 013267 4 PSKVIHVRNVGH------EISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRG- 70 (446)
Q Consensus 4 ~s~~l~v~~lp~------~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g- 70 (446)
.+++|||+|||. ++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++.||+. .+.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~--~~~g~ 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK--RLDLK 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC--BSSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc--ccCCC
Confidence 478999999999 9999999999999999999999865 489999999999999999999998 8999
Q ss_pred eEeEEEecccc
Q 013267 71 RNVYVQFSSHQ 81 (446)
Q Consensus 71 ~~i~v~~~~~~ 81 (446)
++|+|.++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998654
No 280
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3e-16 Score=124.96 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=71.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.+.++|||+|||.++|+++|+++|+.||.|.++.++.++ .+|||||+|.+.++|.+|++ ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999885444322 27899999999999999999 9999999999999999
Q ss_pred cCcccc
Q 013267 437 QLQSIR 442 (446)
Q Consensus 437 ~~~~~~ 442 (446)
+++.+.
T Consensus 102 ~~~~~~ 107 (124)
T 1wel_A 102 TKKGML 107 (124)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 987653
No 281
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.6e-16 Score=112.74 Aligned_cols=72 Identities=13% Similarity=0.177 Sum_probs=67.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
++|||+|||.++++++|+++|++||.|.++.+..++ .+|+|||+|.+.++|.+|++.++ ..+.|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999998653 27899999999999999999999 9999999999987
No 282
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=4.9e-16 Score=118.64 Aligned_cols=75 Identities=17% Similarity=0.356 Sum_probs=67.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
.+.++|||+|||.++|+++|+++|+.|| |.+|.++.+ +|+|||+|.+.++|.+|+ .+++. .++|++|+|
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~--~~~g~~l~V 92 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE--SLGNRRIRV 92 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC--CBTTBCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC--EECCeEEEE
Confidence 4679999999999999999999999999 999999865 489999999999999999 89988 899999999
Q ss_pred Eecccc
Q 013267 76 QFSSHQ 81 (446)
Q Consensus 76 ~~~~~~ 81 (446)
+++.+.
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998654
No 283
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=119.10 Aligned_cols=80 Identities=26% Similarity=0.371 Sum_probs=71.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHH----HHhcccCceEEEEEeeCC--CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEE
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLF----NLFSLYGNIIRIKLLRNK--PDHALVQMGDGFQAELAVHFLKGALLFGKRLEV 323 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~----~~F~~~G~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v 323 (446)
.+++++|||+|||+ .+++++|+ ++|++||.|.+|.+..+. +|+|||+|.+.++|..|+..|||..|.|+.|+|
T Consensus 26 ~~p~~~LfV~nL~~-~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITNINP-EVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEESCCT-TSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34567999999995 79998765 799999999999886532 899999999999999999999999999999999
Q ss_pred EEecCCC
Q 013267 324 NFSKHPN 330 (446)
Q Consensus 324 ~~~~~~~ 330 (446)
.|++...
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998764
No 284
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=116.84 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=70.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeE-EEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITK-LVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~-~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.+.++|||+|||+++|++||+++|++||.|.+ |.++.+ +|+|||+|.+.++|.+|++. ++. .++|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~--~~~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKE--RIGHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTC--CSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccc--hhCCcEEEEE
Confidence 45789999999999999999999999999987 777654 59999999999999999997 776 8999999999
Q ss_pred ecccccccc
Q 013267 77 FSSHQELTT 85 (446)
Q Consensus 77 ~~~~~~~~~ 85 (446)
++...++..
T Consensus 90 ~~~~~~~~~ 98 (104)
T 1wg5_A 90 KSSRAEVRT 98 (104)
T ss_dssp EECTTTSCC
T ss_pred ECCHHHHHH
Confidence 987765543
No 285
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=1.9e-15 Score=120.42 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=73.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.++++|||+|||.++|+++|+++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|++.+++. .++|++|+|++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV--PLDGRPMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTE--ESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEE
Confidence 46789999999999999999999999999999999875 589999999999999999999998 89999999999
Q ss_pred cccccc
Q 013267 78 SSHQEL 83 (446)
Q Consensus 78 ~~~~~~ 83 (446)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 876543
No 286
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=124.28 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=70.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 360 CSPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
..++++|||+|||..+++++|+++|++||.|.+++++.++ .+|||||+|.+.++|.+|++.|||..++|++|+|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3467899999999999999999999999999999998652 388999999999999999999999999999999998
Q ss_pred e
Q 013267 436 S 436 (446)
Q Consensus 436 a 436 (446)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 287
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=116.54 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=69.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCC---ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~---~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
.+.++|||+|||.++|++||+++|++||.+ ++.++.++. +|||||+|.+.++|++|+ .+|+..++|+.|.|..+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 356899999999999999999999999955 888875533 789999999999999999 479999999999999988
Q ss_pred Ccc
Q 013267 438 LQS 440 (446)
Q Consensus 438 ~~~ 440 (446)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 288
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=113.19 Aligned_cols=75 Identities=12% Similarity=0.279 Sum_probs=69.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.+.++|||+|||.++|+++|+++|++| .|.+|.++.+ +|+|||+|.+.++|.+|++ +++. .++|++|.|.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~--~~~gr~i~v~~ 83 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNRE--YMGGRYIEVFR 83 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSE--EETTEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCc--eeCCcEEEEEE
Confidence 457899999999999999999999999 8999999876 4899999999999999999 9988 89999999999
Q ss_pred cccc
Q 013267 78 SSHQ 81 (446)
Q Consensus 78 ~~~~ 81 (446)
+.+.
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8764
No 289
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-16 Score=120.07 Aligned_cols=80 Identities=15% Similarity=0.095 Sum_probs=70.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEe----eCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFE----MNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~----~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++|+++|+++|++||.|.. .++. .+.+|||||+|.+.++|.+|++ |||..+.|+.|+|.|+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35689999999999999999999999998877 3332 2458899999999999999998 9999999999999999
Q ss_pred cCcccc
Q 013267 437 QLQSIR 442 (446)
Q Consensus 437 ~~~~~~ 442 (446)
+++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 987654
No 290
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=3.3e-16 Score=122.79 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=65.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCe-----EEEEeec
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI-----IRISFSQ 437 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~-----l~v~~a~ 437 (446)
.++|||+|||.++++++|+++|++||.|.++.++.+ |||||+|.+.++|++|++.|||..|.|+. |+|..++
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 579999999999999999999999999999999743 99999999999999999999999999999 6666555
Q ss_pred Cc
Q 013267 438 LQ 439 (446)
Q Consensus 438 ~~ 439 (446)
++
T Consensus 93 ~~ 94 (115)
T 3beg_B 93 PR 94 (115)
T ss_dssp --
T ss_pred CC
Confidence 43
No 291
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.7e-15 Score=112.62 Aligned_cols=76 Identities=14% Similarity=0.278 Sum_probs=63.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
.++..+|||+|||+++||++|+++|++||.|.+|.++++ +|||||+|.+.++|.+ +++..+.++|++|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 357789999999999999999999999999999999876 7999999999999984 34554467899999999876
Q ss_pred c
Q 013267 81 Q 81 (446)
Q Consensus 81 ~ 81 (446)
+
T Consensus 84 k 84 (89)
T 3d2w_A 84 K 84 (89)
T ss_dssp -
T ss_pred C
Confidence 4
No 292
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=1.2e-15 Score=120.09 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccc---eeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGV---ITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~---i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
.+.++|||+|||.++|++||+++|++||. |.+|+++.+ +|+|||+|.+.++|.+|++ +++. .++|+.|+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~--~~~gr~i~ 91 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRE--SMGHRYIE 91 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTE--EETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCC--eECCeEEE
Confidence 35688999999999999999999999999 889999876 4899999999999999999 8887 89999999
Q ss_pred EEecccccccccc
Q 013267 75 VQFSSHQELTTME 87 (446)
Q Consensus 75 v~~~~~~~~~~~~ 87 (446)
|.++..++.....
T Consensus 92 V~~a~~~~~~~~~ 104 (118)
T 2db1_A 92 VFKSHRTEMDWVL 104 (118)
T ss_dssp EEEECHHHHHHHH
T ss_pred EEECCHHHHHHHH
Confidence 9998877654443
No 293
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.5e-15 Score=113.23 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=69.6
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecC
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKH 328 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~ 328 (446)
.+.+++|||+|||. .+++++|+++|+.||.|. +.++.+. +|+|||+|.+.++|..|++.|||..+.|+.|+|.++++
T Consensus 16 ~~~~~~l~V~nL~~-~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 16 APLAADVYVGNLPR-DARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SCCCCEEEEECCCT-TCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCEEEEeCCCC-cCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 44567999999995 799999999999999996 5555443 89999999999999999999999999999999999986
Q ss_pred C
Q 013267 329 P 329 (446)
Q Consensus 329 ~ 329 (446)
+
T Consensus 94 ~ 94 (97)
T 2e5j_A 94 Q 94 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 294
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2.7e-15 Score=118.32 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=72.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCcc
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQS 440 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 440 (446)
.++++|||+|+ ++|+++|+++|++||.|.++.+. +.+|||||+|.+.++|.+|++.|||..+.|+.|+|.|++++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 46789999996 69999999999999999999996 579999999999999999999999999999999999999886
Q ss_pred ccc
Q 013267 441 IRE 443 (446)
Q Consensus 441 ~~~ 443 (446)
...
T Consensus 113 ~~~ 115 (121)
T 2bz2_A 113 MLD 115 (121)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 295
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=116.15 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=69.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
.++++|||+|||.++++++|+++|+.|+ .+.++.++ .+|||||+|.+.++|.+|++.||+..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4678999999999999999999999875 45555432 2789999999999999999999999999999999999
Q ss_pred cCcccc
Q 013267 437 QLQSIR 442 (446)
Q Consensus 437 ~~~~~~ 442 (446)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 987654
No 296
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=118.81 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=71.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccce-eEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVI-TKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i-~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|++||.| .+|.++.+ +|||||+|.+.++|.+|++. ++. .++|++|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~--~~~gr~i~v~ 89 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRK--KLNGREAFVH 89 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSE--EETTEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCC--ccCCeEEEEE
Confidence 467899999999999999999999999999 88999864 58999999999999999997 776 8999999999
Q ss_pred ecccccccc
Q 013267 77 FSSHQELTT 85 (446)
Q Consensus 77 ~~~~~~~~~ 85 (446)
++.++....
T Consensus 90 ~a~~~~~~~ 98 (114)
T 2cpy_A 90 VVTLEDMRE 98 (114)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHH
Confidence 998766443
No 297
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=119.04 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=69.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
+++|||+|||.++|+++|+++|+.||.|.+|.++.+ +|+|||+|.+.++|.+|+ .+++. .++|++|+|+++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~--~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ--RLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE--EETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC--EeCCeEEEEEec
Confidence 579999999999999999999999999999999865 489999999999999999 89988 899999999998
Q ss_pred cccc
Q 013267 79 SHQE 82 (446)
Q Consensus 79 ~~~~ 82 (446)
.+..
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7654
No 298
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.60 E-value=3.1e-15 Score=119.56 Aligned_cols=79 Identities=27% Similarity=0.353 Sum_probs=72.9
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEE
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 324 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~ 324 (446)
.+++++|||+|||. .+++++|+++|+.||.|..|+++.+. +|+|||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 43 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSL-YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTT-SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667999999996 79999999999999999999998753 7899999999999999999999999999999999
Q ss_pred EecCC
Q 013267 325 FSKHP 329 (446)
Q Consensus 325 ~~~~~ 329 (446)
|++++
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 98865
No 299
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.7e-16 Score=111.29 Aligned_cols=70 Identities=10% Similarity=0.251 Sum_probs=65.2
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
++|||+|||.++|+++|+++|++||+|.+|.+.++ +|+|||+|.+.++|.+|++.++ . .++|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~--~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H--ELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-C--CCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-C--ccCCEEEEEEec
Confidence 46999999999999999999999999999999876 3899999999999999999998 5 799999999975
No 300
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=113.13 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=67.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCC-eEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKN-QALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~-~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
+..+++|||+|||.++|+++|+++|++||.|.+|.+.+..+ ||||+|.+.++|.+|+. +++. .++|++|.|+++.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~--~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQH--SLGGHRLRVRPREQ 81 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCC--EETTEECCCBCSCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCe--EECCEEEEEEECCc
Confidence 35678999999999999999999999999999983333222 99999999999999999 9988 89999999998765
Q ss_pred cc
Q 013267 81 QE 82 (446)
Q Consensus 81 ~~ 82 (446)
..
T Consensus 82 ~~ 83 (94)
T 2e5g_A 82 KE 83 (94)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 301
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=118.19 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=70.2
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
+.++|||+|||.++|+++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|+.. ++. .++|++|+|.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~--~~~g~~l~V~~ 102 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPH--SIDGRVVEPKR 102 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSE--EETTEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCc--EECCEEEEEEE
Confidence 3589999999999999999999999999999999986 48999999999999999998 766 89999999999
Q ss_pred cccccc
Q 013267 78 SSHQEL 83 (446)
Q Consensus 78 ~~~~~~ 83 (446)
+.+...
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 877543
No 302
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.9e-15 Score=111.46 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=68.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
+.++++|||+|||.++|+++|+++|++||+|.+|+++++ +|||||+|.+.++|++|. +..+.++|++|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~----~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC----GEDLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT----TCEEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh----cCCceeCCEEEEEEecCC
Confidence 467899999999999999999999999999999999876 799999999999998653 334468999999999877
Q ss_pred ccc
Q 013267 81 QEL 83 (446)
Q Consensus 81 ~~~ 83 (446)
...
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 303
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=118.61 Aligned_cols=79 Identities=24% Similarity=0.480 Sum_probs=70.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccce----eEEEEEcc--CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVI----TKLVMLRA--KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i----~~~~i~~~--~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|++||.| ..+.+... +|||||+|.+.++|.+|++.|++. .++|++|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY--KLYGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC--BCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEE
Confidence 478999999999999999999999999998 56666643 599999999999999999999998 8999999999
Q ss_pred ecccccc
Q 013267 77 FSSHQEL 83 (446)
Q Consensus 77 ~~~~~~~ 83 (446)
++.+...
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9877544
No 304
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=3.4e-15 Score=126.12 Aligned_cols=83 Identities=20% Similarity=0.180 Sum_probs=76.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
.++++|||+|||..+++++|+++|++||.|.+|.+..++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.||.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 457899999999999999999999999999999998543 37899999999999999999999999999999999999
Q ss_pred Cccccc
Q 013267 438 LQSIRE 443 (446)
Q Consensus 438 ~~~~~~ 443 (446)
.....+
T Consensus 166 ~~~~~~ 171 (177)
T 2f3j_A 166 SQIDLE 171 (177)
T ss_dssp SGGGGC
T ss_pred CCCCCC
Confidence 876654
No 305
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=123.01 Aligned_cols=74 Identities=22% Similarity=0.372 Sum_probs=69.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
+++++|||+|||.++|+++|+++|++||.|.+++++++ +|+|||+|.+.++|.+|++.|++. .++|++|+|+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~ 138 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES--ELFGRTIRVN 138 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE--EETTEEEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEE
Confidence 46899999999999999999999999999999999876 589999999999999999999998 8999999999
Q ss_pred ec
Q 013267 77 FS 78 (446)
Q Consensus 77 ~~ 78 (446)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 74
No 306
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=6.5e-16 Score=113.04 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=63.5
Q ss_pred ceEEEEcCCCCCC------CHHHHHHhccCccceeEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCceecCe-Ee
Q 013267 5 SKVIHVRNVGHEI------SENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGR-NV 73 (446)
Q Consensus 5 s~~l~v~~lp~~~------te~~l~~~f~~~G~i~~~~i~~~----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~-~i 73 (446)
+++|||+|||.++ |+++|+++|++||+|.+|.+.+. +|+|||+|.+.++|.+|++.||+. .++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~--~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY--KLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSC--CCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCc--ccCCceeE
Confidence 5789999999999 78999999999999999998843 699999999999999999999998 89998 88
Q ss_pred EE
Q 013267 74 YV 75 (446)
Q Consensus 74 ~v 75 (446)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 307
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.7e-15 Score=113.96 Aligned_cols=77 Identities=13% Similarity=0.260 Sum_probs=69.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.++ |||||+|.+.++|.+|++. +. .++|++|.|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~--~~~g~~l~v~ 88 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RH--MIDGRWCDCK 88 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CE--EETTEEEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CC--eeCCeEEEEE
Confidence 467899999999999999999999999999999998873 7999999999999999984 33 7999999999
Q ss_pred ecccccc
Q 013267 77 FSSHQEL 83 (446)
Q Consensus 77 ~~~~~~~ 83 (446)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9877543
No 308
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=5.4e-16 Score=119.97 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCC---eeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGS---IVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~---v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
...++|||+|||.++|+++|+++|+.||. |.++.++.++ .+|||||+|.+.++|.+|++ +|+..++|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35689999999999999999999999998 8999998553 37899999999999999999 99999999999999
Q ss_pred eecCcccc
Q 013267 435 FSQLQSIR 442 (446)
Q Consensus 435 ~a~~~~~~ 442 (446)
+++++.+.
T Consensus 88 ~a~~~~~~ 95 (107)
T 2lmi_A 88 EINNEDVD 95 (107)
T ss_dssp ECCHHHHH
T ss_pred ECCHHHHH
Confidence 99887644
No 309
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=124.18 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=70.3
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCcc--ceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFG--VITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G--~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
.+++|||+|||.++|+++|+++|++|| .|.+|+++.+ +|||||+|.+.++|.+|+..|++. .++|++|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~--~~~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK--VLNGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC--EETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC--EECCeEeEE
Confidence 357999999999999999999999999 8999999877 389999999999999999999998 899999999
Q ss_pred Eeccccc
Q 013267 76 QFSSHQE 82 (446)
Q Consensus 76 ~~~~~~~ 82 (446)
.++.+..
T Consensus 132 ~~a~~~~ 138 (156)
T 3n9u_C 132 RPATRQN 138 (156)
T ss_dssp EECCHHH
T ss_pred EEcCCCc
Confidence 9987643
No 310
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=4.4e-15 Score=123.39 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=72.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.++.++ ++|||+|.+.++|++|++.|++. .++|++|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~ 114 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT--RLDDRIIRTD 114 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS--EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEE
Confidence 478999999999999999999999999999999998763 79999999999999999999988 8999999999
Q ss_pred eccccc
Q 013267 77 FSSHQE 82 (446)
Q Consensus 77 ~~~~~~ 82 (446)
++.+..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 987643
No 311
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=116.57 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=69.1
Q ss_pred CceEEEEcCCCCCC------CHHHHHHhccCccceeEEEEEcc----CCeEEEEecChhHHHHHHHhhccCCceecCe-E
Q 013267 4 PSKVIHVRNVGHEI------SENDLLQLFQPFGVITKLVMLRA----KNQALLQMQDVPSAINALQFYTNVQPTIRGR-N 72 (446)
Q Consensus 4 ~s~~l~v~~lp~~~------te~~l~~~f~~~G~i~~~~i~~~----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~-~ 72 (446)
.+++|||+|||..+ |+++|+++|++||.|.+|.+.+. +|+|||+|.+.++|.+|+..||+. .+.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~--~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY--KLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSE--ECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCc--ccCCCce
Confidence 46899999999999 78999999999999999999843 699999999999999999999998 89998 9
Q ss_pred eEEEeccc
Q 013267 73 VYVQFSSH 80 (446)
Q Consensus 73 i~v~~~~~ 80 (446)
|+|.++..
T Consensus 92 l~V~~a~~ 99 (105)
T 2nlw_A 92 FRVNLFTD 99 (105)
T ss_dssp EEEECSCC
T ss_pred EEEEEcch
Confidence 99999764
No 312
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.59 E-value=1.6e-15 Score=133.77 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=73.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccC--CeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHG--SIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
..++|||+|||.++|+++|+++|+.|| .|.+|+|+.++ .+|||||+|.+.++|.+||+.||+..|.|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 99999998763 378999999999999999999999999999999999
Q ss_pred ecCcccc
Q 013267 436 SQLQSIR 442 (446)
Q Consensus 436 a~~~~~~ 442 (446)
++++..+
T Consensus 147 a~~~~~~ 153 (229)
T 3q2s_C 147 VNKQFLS 153 (229)
T ss_dssp CCHHHHH
T ss_pred CCCCccc
Confidence 9876543
No 313
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.6e-15 Score=116.92 Aligned_cols=77 Identities=16% Similarity=0.342 Sum_probs=70.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCcee--------c
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTI--------R 69 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~--------~ 69 (446)
.++++|||+|||+++|+++|+++|++||.|.+|+++.+ +|+|||+|.+.++|.+|+..||+. .+ .
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~~~~~~~~~ 100 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK--FIKTPPGVSAP 100 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTC--CCCCCTTSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC--EEcCCccccCC
Confidence 46789999999999999999999999999999999986 489999999999999999999998 56 5
Q ss_pred CeEeEEEecccc
Q 013267 70 GRNVYVQFSSHQ 81 (446)
Q Consensus 70 g~~i~v~~~~~~ 81 (446)
|++|.|.|+.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998753
No 314
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=4e-15 Score=124.77 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=71.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||..+|+++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|+..||+. .|.|++|.|.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~ 147 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA--EIMGQTIQVD 147 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEE
Confidence 46688999999999999999999999999999999987 489999999999999999999998 8999999999
Q ss_pred eccccc
Q 013267 77 FSSHQE 82 (446)
Q Consensus 77 ~~~~~~ 82 (446)
|+.+..
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 987654
No 315
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=1.8e-15 Score=120.59 Aligned_cols=75 Identities=23% Similarity=0.299 Sum_probs=69.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|+ .+++. .++|++|+|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~--~~~g~~l~V~~ 111 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET--VFRGRTIKVLP 111 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC--EETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC--eECCeEEEEEE
Confidence 3589999999999999999999999999999999876 489999999999999999 79988 89999999999
Q ss_pred cccc
Q 013267 78 SSHQ 81 (446)
Q Consensus 78 ~~~~ 81 (446)
+...
T Consensus 112 a~~~ 115 (124)
T 2jwn_A 112 KRTN 115 (124)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8653
No 316
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=1.7e-15 Score=121.43 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=71.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccc---eeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGV---ITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~---i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
...++|||+|||+++|++||+++|++||. |.+|+++.+ +|+|||+|.+.++|.+|++ +++. .++|++|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~--~l~gr~i~ 118 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRE--SMGHRYIE 118 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEE--ESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCC--EECCEEEE
Confidence 35689999999999999999999999999 889999876 4899999999999999999 8887 89999999
Q ss_pred EEeccccccc
Q 013267 75 VQFSSHQELT 84 (446)
Q Consensus 75 v~~~~~~~~~ 84 (446)
|.++.+++..
T Consensus 119 V~~a~~~e~~ 128 (136)
T 2hgl_A 119 VFKSHRTEMD 128 (136)
T ss_dssp EEECCHHHHH
T ss_pred EEECChHHHH
Confidence 9998766543
No 317
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.6e-15 Score=113.34 Aligned_cols=76 Identities=17% Similarity=0.327 Sum_probs=67.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.+.++|||+|||+++|++||+++|++||.+ +|.++.+ +|+|||+|.+.++|++|++ +++. .++|+.|.|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~--~~~gr~i~V~~ 88 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKA--NMQHRYVELFL 88 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSC--CSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCC--eECCcEEEEEE
Confidence 467899999999999999999999999954 9999876 3799999999999999996 6776 89999999998
Q ss_pred ccccc
Q 013267 78 SSHQE 82 (446)
Q Consensus 78 ~~~~~ 82 (446)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 76644
No 318
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=114.47 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=70.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEE-EEccC--CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLV-MLRAK--NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~-i~~~~--~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
++++|||+|||+++|+++|+++|++||.|.+|+ ++.++ +.|||+|.+.++|.+|++.||+. .++|++|+|+++.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGF--QLENFTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTC--BCSSCBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcCc
Confidence 478999999999999999999999999999994 77765 45999999999999999999998 89999999999877
Q ss_pred c
Q 013267 81 Q 81 (446)
Q Consensus 81 ~ 81 (446)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 319
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=1.2e-15 Score=109.79 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=63.9
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
+|||+|||+++|+++|+++|++||+|.+|.++.++ |+|||+|.+.++|++|++ +++. .++|++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~--~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFH--EINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCC--CSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCC--EECCEEEEEEeC
Confidence 48999999999999999999999999999998763 899999999999999998 8877 899999999874
No 320
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=6.7e-16 Score=115.55 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=66.6
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecc
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~ 79 (446)
++|||+|||.++|+++|+++|++||.|.+|.+.++ +|+|||+|.+.+ |.+|+..+|+. .++|++|+|+++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~--~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT--DFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS--CCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC--EECCeEEEEEEcC
Confidence 68999999999999999999999999999999866 489999999999 99999999998 7999999999987
Q ss_pred ccc
Q 013267 80 HQE 82 (446)
Q Consensus 80 ~~~ 82 (446)
+..
T Consensus 79 ~~~ 81 (90)
T 2ki2_A 79 PKK 81 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 321
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=119.35 Aligned_cols=82 Identities=27% Similarity=0.365 Sum_probs=72.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCe----eEEEEEeeCC---ceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEE
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSI----VNTKLFEMNG---KKQALVLFETEEQATEALVCKHASSLGGSIIRI 433 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v----~~~~i~~~~~---~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 433 (446)
....+|||+|||.++|++||+++|++||.| ..|.++.++. +|||||+|.+.++|.+|++. |+..++|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 356899999999999999999999999975 6888875532 78999999999999999986 999999999999
Q ss_pred EeecCccccc
Q 013267 434 SFSQLQSIRE 443 (446)
Q Consensus 434 ~~a~~~~~~~ 443 (446)
..++++.++.
T Consensus 100 ~~a~~~e~~~ 109 (123)
T 2dha_A 100 FRSTAAEVQQ 109 (123)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHH
Confidence 9998877654
No 322
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-16 Score=125.22 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=74.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeE--------EEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVN--------TKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGG 428 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--------~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g 428 (446)
.++++|||+|||.++++++|+++|++||.|.. +.++.++ .+|||||+|.+.++|.+|++.|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46789999999999999999999999999998 7777542 37899999999999999999999999999
Q ss_pred CeEEEEeecCcccc
Q 013267 429 SIIRISFSQLQSIR 442 (446)
Q Consensus 429 ~~l~v~~a~~~~~~ 442 (446)
+.|+|.|++++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999987654
No 323
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=6.2e-15 Score=112.81 Aligned_cols=82 Identities=24% Similarity=0.296 Sum_probs=71.9
Q ss_pred CCCceEEEEcCCCC-----CCCHHHHHHhccCccceeEEEEEcc-------CCeEEEEecChhHHHHHHHhhccCCceec
Q 013267 2 TEPSKVIHVRNVGH-----EISENDLLQLFQPFGVITKLVMLRA-------KNQALLQMQDVPSAINALQFYTNVQPTIR 69 (446)
Q Consensus 2 ~~~s~~l~v~~lp~-----~~te~~l~~~f~~~G~i~~~~i~~~-------~~~afV~F~~~~~A~~A~~~~~~~~~~~~ 69 (446)
..||++|+|+||.. +-+++||+++|++||.|.+|.|+++ +|+|||+|.+.++|.+|++.||+. .+.
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~--~~~ 82 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR--YFG 82 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC--EET
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC--EEC
Confidence 57999999999963 2378999999999999999999864 589999999999999999999999 999
Q ss_pred CeEeEEEecccccccc
Q 013267 70 GRNVYVQFSSHQELTT 85 (446)
Q Consensus 70 g~~i~v~~~~~~~~~~ 85 (446)
|++|+|.++.......
T Consensus 83 Gr~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 83 GRVVKACFYNLDKFRV 98 (105)
T ss_dssp TEECEEEECCHHHHHT
T ss_pred CcEEEEEEcCHHHhhh
Confidence 9999999987755443
No 324
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=114.92 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
+.+|||+|||.++|++||+++|+.| .|.++.|+.++ .+|||||+|.+.++|.+|+ .+|+..++||.|.|..++++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4799999999999999999999999 89999998543 3889999999999999999 79999999999999988765
Q ss_pred c
Q 013267 440 S 440 (446)
Q Consensus 440 ~ 440 (446)
.
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 325
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.8e-15 Score=114.69 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=71.0
Q ss_pred CCCccEEEEeCCCCCC-----------CHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 013267 360 CSPTKMIHLSTLPQDV-----------TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGG 428 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~~-----------t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g 428 (446)
..++++|+|+||.... ++++|+++|++||.|.++.+.+.+.+|+|||+|.+.++|.+|++.|||..+.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3568999999995433 26899999999999999977544569999999999999999999999999999
Q ss_pred CeEEEEeecCcc
Q 013267 429 SIIRISFSQLQS 440 (446)
Q Consensus 429 ~~l~v~~a~~~~ 440 (446)
+.|+|.|++++.
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999998854
No 326
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=5.6e-15 Score=116.53 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=71.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQE 82 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~~~ 82 (446)
.++++|||+|+ ++|+++|+++|++||.|.+|.+.+.+|||||+|.+.++|.+|+..|++. .++|++|.|.++.+..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~--~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT--QVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTC--BCSSCBCEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEEeCCCC
Confidence 47799999995 6999999999999999999999999999999999999999999999998 8999999999987754
Q ss_pred c
Q 013267 83 L 83 (446)
Q Consensus 83 ~ 83 (446)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 327
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-14 Score=113.77 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=72.0
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEE
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-----PDHALVQMGDGFQAELAVHFLKGALLFGKRLEVN 324 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~ 324 (446)
..+.++|||+|||. .+++++|+++|+.||.|..|+|+.++ +|+|||+|.+.++|.+|++.+|+ .|.|+.|+|.
T Consensus 14 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGLPY-HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECCCS-SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 45667999999996 79999999999999999999998864 68999999999999999999998 8999999999
Q ss_pred EecCCC
Q 013267 325 FSKHPN 330 (446)
Q Consensus 325 ~~~~~~ 330 (446)
|+....
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997654
No 328
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=4.9e-15 Score=110.06 Aligned_cols=72 Identities=17% Similarity=0.383 Sum_probs=66.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhcc----C-------CeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEH----G-------SIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 429 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G-------~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~ 429 (446)
.++++|||+|||.++++++|+++|++| | .|.++.+.. ++|||||+|.+.++|.+|+ .|||..+.|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 356899999999999999999999999 8 899999874 4899999999999999999 9999999999
Q ss_pred eEEEEe
Q 013267 430 IIRISF 435 (446)
Q Consensus 430 ~l~v~~ 435 (446)
.|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 329
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-15 Score=116.21 Aligned_cols=76 Identities=9% Similarity=0.144 Sum_probs=67.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEc------cCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR------AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~------~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|++||.|.. .++. .+|||||+|.+.++|.+|++ +++. .+.|++|+|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~--~~~g~~l~V~ 90 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL--KVFGNEIKLE 90 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC--CBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc--EECCcEEEEE
Confidence 36789999999999999999999999998776 3333 36999999999999999999 9998 8999999999
Q ss_pred eccccc
Q 013267 77 FSSHQE 82 (446)
Q Consensus 77 ~~~~~~ 82 (446)
++.+..
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 987643
No 330
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.7e-15 Score=114.23 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=68.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecc
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~ 79 (446)
+.+|||+|||.++|++||+++|++| .|.+|.|+.+ +|+|||+|.+.++|.+|+ .+++. .++|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~--~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRM--LMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTE--EETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCC--eECCeEEEEEECC
Confidence 4789999999999999999999999 7899999865 589999999999999999 57877 8999999999887
Q ss_pred cccccc
Q 013267 80 HQELTT 85 (446)
Q Consensus 80 ~~~~~~ 85 (446)
...+..
T Consensus 92 ~~~~~~ 97 (109)
T 2dnn_A 92 ERQWVA 97 (109)
T ss_dssp HHHHHH
T ss_pred ccchhh
Confidence 665443
No 331
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=1.6e-15 Score=109.23 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=65.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC----CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 365 MIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN----GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 365 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~----~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
+|||+|||.++++++|+++|++||.|.++.+..++ .+|||||+|.+.++|.+|++. ++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 48999999999999999999999999999997542 388999999999999999985 899999999999886
No 332
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.5e-15 Score=111.88 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=67.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCc--cCCCeEEEEeecCc
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASS--LGGSIIRISFSQLQ 439 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~--~~g~~l~v~~a~~~ 439 (446)
++++|||+|||.++++++|+++|++||.|.++.++.+ .+|||||+|.+.++|++| ++.. +.|++|.|.+++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCC
Confidence 5689999999999999999999999999999999753 689999999999999864 4444 47999999999987
Q ss_pred cccc
Q 013267 440 SIRE 443 (446)
Q Consensus 440 ~~~~ 443 (446)
....
T Consensus 79 ~~~~ 82 (88)
T 1wf0_A 79 HNSN 82 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 333
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=116.43 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=72.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccc---eeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGV---ITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVY 74 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~---i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~ 74 (446)
....+|||+|||+++|+++|+++|+.||. |.+|.++.+ +|+|||+|.+.++|++|+. +++. .++|+.|+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~--~~~gr~i~ 85 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRM--YMGQRYVE 85 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTC--CSSSSCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcc--eeCCeEEE
Confidence 45688999999999999999999999998 889999865 4899999999999999999 8887 79999999
Q ss_pred EEeccccccccc
Q 013267 75 VQFSSHQELTTM 86 (446)
Q Consensus 75 v~~~~~~~~~~~ 86 (446)
|.++.+.+....
T Consensus 86 V~~a~~~~~~~~ 97 (107)
T 2lmi_A 86 VYEINNEDVDAL 97 (107)
T ss_dssp CEECCHHHHHHH
T ss_pred EEECCHHHHHHH
Confidence 999887665443
No 334
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=5.3e-15 Score=115.88 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=66.8
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeE-----eEEEec
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRN-----VYVQFS 78 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~-----i~v~~~ 78 (446)
...+|||+|||.++|+++|+++|++||.|.+|.++.+ |||||+|.+.++|++|++.||+. .++|++ |+|..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~--~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT--KFRSHEGETAYIRVKVD 91 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTC--BCCCTTSCCCBCEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCC--EECCcEeeeEEEEeccC
Confidence 3578999999999999999999999999999999988 99999999999999999999998 899998 777765
Q ss_pred cc
Q 013267 79 SH 80 (446)
Q Consensus 79 ~~ 80 (446)
.+
T Consensus 92 ~~ 93 (115)
T 3beg_B 92 GP 93 (115)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 335
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=5.1e-15 Score=113.54 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=70.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
++++|||+|||.++++++|+++|++||.|.++.++.++ .+|||||+|.+.++|.+|++ ++..+.|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 46899999999999999999999999999999998653 37899999999999999998 99999999999999986
Q ss_pred cc
Q 013267 439 QS 440 (446)
Q Consensus 439 ~~ 440 (446)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 336
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=9.1e-15 Score=110.78 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=67.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEc--cCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEeccc
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSH 80 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~--~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~~ 80 (446)
.++++|||+|||.++|+++|+++|++||.|..+ ... .+|+|||+|.+.++|.+|+..+++. .++|++|+|+++.+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGE 90 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEE--EETTEEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEEcCC
Confidence 467999999999999999999999999998776 222 2589999999999999999999998 89999999999866
Q ss_pred c
Q 013267 81 Q 81 (446)
Q Consensus 81 ~ 81 (446)
.
T Consensus 91 ~ 91 (96)
T 1fjc_A 91 K 91 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 337
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=3.7e-15 Score=117.53 Aligned_cols=81 Identities=28% Similarity=0.327 Sum_probs=70.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCee--EEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEe
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIV--NTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISF 435 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~--~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 435 (446)
.+.++|||+|||.++|+++|+++|++| .|. +|+|+.++ .+|||||+|.+.++|.+|++. ++..|+||.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 346899999999999999999999999 566 88887543 388999999999999999985 77999999999999
Q ss_pred ecCccccc
Q 013267 436 SQLQSIRE 443 (446)
Q Consensus 436 a~~~~~~~ 443 (446)
+.++.+.+
T Consensus 118 a~~~e~~~ 125 (126)
T 2hgm_A 118 SSQEEVRS 125 (126)
T ss_dssp ECHHHHCC
T ss_pred CCHHHhhc
Confidence 98776653
No 338
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=110.21 Aligned_cols=75 Identities=16% Similarity=0.288 Sum_probs=67.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||.++|+++|+++|++|+ +|.++.++ |+|||+|.+.++|.+|++.|++. .++|++|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~ 87 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLD 87 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC--EETTEECEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEE
Confidence 5789999999999999999999999885 55666553 89999999999999999999998 8999999999
Q ss_pred eccccc
Q 013267 77 FSSHQE 82 (446)
Q Consensus 77 ~~~~~~ 82 (446)
++.+..
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 987753
No 339
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-15 Score=119.58 Aligned_cols=77 Identities=8% Similarity=0.218 Sum_probs=68.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
+.++|||+|||+++|+++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|+. +++. .++|++|.|.+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~--~~~gr~i~V~~ 100 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQ--YMGNRFIQVHP 100 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSB--CSTTSCBEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCC--eECCcEEEEEE
Confidence 4589999999999999999999999999987444432 4899999999999999999 8887 89999999999
Q ss_pred cccccc
Q 013267 78 SSHQEL 83 (446)
Q Consensus 78 ~~~~~~ 83 (446)
+..+++
T Consensus 101 a~~~~~ 106 (124)
T 1wel_A 101 ITKKGM 106 (124)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 877654
No 340
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.55 E-value=9.1e-15 Score=111.93 Aligned_cols=82 Identities=12% Similarity=0.209 Sum_probs=70.9
Q ss_pred CCCccEEEEeCCC--CCCC--------HHHHHHHhhccCCeeEEEEEeeC------CceEEEEEeCCHHHHHHHHHHhCC
Q 013267 360 CSPTKMIHLSTLP--QDVT--------EEEIVSHLEEHGSIVNTKLFEMN------GKKQALVLFETEEQATEALVCKHA 423 (446)
Q Consensus 360 ~~~~~~l~v~nlp--~~~t--------~~~l~~~F~~~G~v~~~~i~~~~------~~g~~fV~f~~~~~A~~A~~~l~~ 423 (446)
+.|+++|.|.|+- .+.. ++||++.|++||.|.++.|+.+. ++|+|||+|.+.++|.+|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 3588999999993 3332 47999999999999999998542 478999999999999999999999
Q ss_pred CccCCCeEEEEeecCccc
Q 013267 424 SSLGGSIIRISFSQLQSI 441 (446)
Q Consensus 424 ~~~~g~~l~v~~a~~~~~ 441 (446)
+.++||.|+|+|+.....
T Consensus 82 ~~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDSY 99 (105)
T ss_dssp CEETTEECEEEEECHHHH
T ss_pred CEeCCCEEEEEEeCHHHH
Confidence 999999999999876543
No 341
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=4.6e-16 Score=122.43 Aligned_cols=80 Identities=20% Similarity=0.449 Sum_probs=73.1
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHhccCccceeE--------EEEEcc------CCeEEEEecChhHHHHHHHhhccCCce
Q 013267 2 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITK--------LVMLRA------KNQALLQMQDVPSAINALQFYTNVQPT 67 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~--------~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~ 67 (446)
..++++|||+|||.++|+++|+++|++||.|.+ |.++.+ +|||||+|.+.++|.+|++.|++. .
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~ 81 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK--E 81 (116)
Confidence 468899999999999999999999999999988 888766 489999999999999999999998 8
Q ss_pred ecCeEeEEEecccccc
Q 013267 68 IRGRNVYVQFSSHQEL 83 (446)
Q Consensus 68 ~~g~~i~v~~~~~~~~ 83 (446)
++|++|+|+++.+...
T Consensus 82 ~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 82 FSGNPIKVSFATRRAD 97 (116)
Confidence 9999999999877543
No 342
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.54 E-value=3.2e-15 Score=107.67 Aligned_cols=69 Identities=9% Similarity=0.204 Sum_probs=62.9
Q ss_pred EEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 7 VIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 7 ~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
+|||+|||.++|+++|+++|++||+|.+|.+..+ +|+|||+|.+.++|.+|++. ++. .++|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~--~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYH--NVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSC--CBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCC--eECCEEEEEEEC
Confidence 4899999999999999999999999999999865 58999999999999999995 555 799999999874
No 343
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=1.1e-14 Score=127.48 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=71.2
Q ss_pred CCceEEEEcCCCCCC---------CHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCcee-----
Q 013267 3 EPSKVIHVRNVGHEI---------SENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTI----- 68 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~---------te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~----- 68 (446)
.++++|||+|||.++ +|++|+++|++||+|.+|+|+.++|+|||+|.+.++|+.|+..|++. .+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~--~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQ--TLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTC--CCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCC--EEecccc
Confidence 467999999999998 79999999999999999999999999999999999999999999998 56
Q ss_pred -------cCeEeEEEecccc
Q 013267 69 -------RGRNVYVQFSSHQ 81 (446)
Q Consensus 69 -------~g~~i~v~~~~~~ 81 (446)
.|+.|.|.|+..+
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTGGGGGGSCCCEEEECC--
T ss_pred ccccccCCCCEEEEEEccCC
Confidence 8999999998764
No 344
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.53 E-value=9.2e-15 Score=115.23 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=67.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCcccee--EEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVIT--KLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~--~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
.++++|||+|||+++||+||+++|++| .|+ +|+|+.+ +|+|||+|.+.++|.+|++. ++. .++|+.|.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~--~l~gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKE--RIGHRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTC--CBTTBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCC--EECCEEEEE
Confidence 356899999999999999999999999 566 8998865 59999999999999999996 445 799999999
Q ss_pred Eecccccc
Q 013267 76 QFSSHQEL 83 (446)
Q Consensus 76 ~~~~~~~~ 83 (446)
..+.++++
T Consensus 116 ~~a~~~e~ 123 (126)
T 2hgm_A 116 FKSSQEEV 123 (126)
T ss_dssp EEECHHHH
T ss_pred EECCHHHh
Confidence 98876544
No 345
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=1.7e-14 Score=126.28 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=70.9
Q ss_pred CCccEEEEeCCCCCC---------CHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCcc-----
Q 013267 361 SPTKMIHLSTLPQDV---------TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSL----- 426 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~---------t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~----- 426 (446)
.+.++|||+|||..+ ++++|+++|++||.|++|+++. ++|||||.|.+.++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 356899999999998 7999999999999999999984 589999999999999999999999999
Q ss_pred -------CCCeEEEEeecCcc
Q 013267 427 -------GGSIIRISFSQLQS 440 (446)
Q Consensus 427 -------~g~~l~v~~a~~~~ 440 (446)
.|+.|.|.||+...
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 89999999998754
No 346
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.53 E-value=1.8e-14 Score=121.62 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.++++|||+|||.++|+++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.|++. .++|++|+|++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~--~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV--PLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC--BCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC--EECCEEEEEEE
Confidence 46789999999999999999999999999999999875 489999999999999999999998 89999999999
Q ss_pred ccccc
Q 013267 78 SSHQE 82 (446)
Q Consensus 78 ~~~~~ 82 (446)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87653
No 347
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.52 E-value=1.2e-14 Score=111.41 Aligned_cols=74 Identities=8% Similarity=0.300 Sum_probs=68.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
++++|||+|||.++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|+. ++. .++|++|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~--~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQI--NFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCC--EETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCC--eECCEEEEEEEC
Confidence 5789999999999999999999999999999999985 4899999999999999998 666 899999999987
Q ss_pred ccc
Q 013267 79 SHQ 81 (446)
Q Consensus 79 ~~~ 81 (446)
...
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 654
No 348
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.52 E-value=3e-15 Score=120.43 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=70.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecC
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQL 438 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 438 (446)
..++|||+|||.++|++||+++|++|| |.+|.|+.++ .+|||||+|.+.++|++|+ .+|+..++|+.|.|..+++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 467999999999999999999999999 6688887543 3889999999999999999 8899999999999999988
Q ss_pred cccc
Q 013267 439 QSIR 442 (446)
Q Consensus 439 ~~~~ 442 (446)
+...
T Consensus 123 ~~~~ 126 (139)
T 2hgn_A 123 TGAS 126 (139)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 7543
No 349
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=7.9e-15 Score=115.41 Aligned_cols=81 Identities=15% Similarity=0.207 Sum_probs=70.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccce----eEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVI----TKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNV 73 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i----~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i 73 (446)
.+..+|||+|||+++|++||+++|++||+| .+|.++.+ +|+|||+|.+.++|++|++. ++. .+.|+.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~--~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKD--LLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTE--ESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCC--eeCCeEE
Confidence 356899999999999999999999999875 68888865 48999999999999999996 666 8999999
Q ss_pred EEEeccccccccc
Q 013267 74 YVQFSSHQELTTM 86 (446)
Q Consensus 74 ~v~~~~~~~~~~~ 86 (446)
.|..+.++++...
T Consensus 98 ~V~~a~~~e~~~~ 110 (123)
T 2dha_A 98 ELFRSTAAEVQQV 110 (123)
T ss_dssp CCEEECHHHHHHH
T ss_pred EEEECCHHHHHHH
Confidence 9998877655443
No 350
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=115.09 Aligned_cols=79 Identities=22% Similarity=0.415 Sum_probs=71.7
Q ss_pred CCCcceEEEeCCCCCCCCHHHHHHHhcccCceEE--EEEeeCC-----CCeEEEEeCCHHHHHHHHHHhcCC----eeCC
Q 013267 250 TNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIR--IKLLRNK-----PDHALVQMGDGFQAELAVHFLKGA----LLFG 318 (446)
Q Consensus 250 ~~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~--v~i~~~~-----~g~afV~f~~~~~A~~A~~~lng~----~~~g 318 (446)
..++++|||+|||. .+++++|+++|+.||.|.. |+|+.++ +|||||+|.+. +|.+|+..|||. .+.|
T Consensus 20 ~~~~~~lfV~nL~~-~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNP-HSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCT-TCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 34567999999995 7999999999999999976 8888765 78999999999 999999999999 9999
Q ss_pred cEEEEEEecCCC
Q 013267 319 KRLEVNFSKHPN 330 (446)
Q Consensus 319 ~~l~v~~~~~~~ 330 (446)
+.|+|.|+++..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998764
No 351
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=117.09 Aligned_cols=77 Identities=25% Similarity=0.411 Sum_probs=68.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeE--------EEEEc---cCCeEEEEecChhHHHHHHHhhccCCceecCe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITK--------LVMLR---AKNQALLQMQDVPSAINALQFYTNVQPTIRGR 71 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~--------~~i~~---~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~ 71 (446)
.|+++|||+|||.++|+++|+++|++||.|.. +.+.. .+|||||+|.+.++|.+|+..||+. .+.|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~--~~~g~ 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY--VLFGK 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB--EETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC--EeCCc
Confidence 57899999999999999999999999999876 33332 3589999999999999999999998 89999
Q ss_pred EeEEEecccc
Q 013267 72 NVYVQFSSHQ 81 (446)
Q Consensus 72 ~i~v~~~~~~ 81 (446)
+|+|.++...
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998654
No 352
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.50 E-value=7.2e-15 Score=118.19 Aligned_cols=78 Identities=15% Similarity=0.295 Sum_probs=68.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
.+.++|||+|||.++||+||+++|++|| |++|.|+.+ +|+|||+|.+.++|.+|+ .+++. .++|+.|.|..
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~--~l~gR~i~V~~ 119 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRA--NMQHRYIELFL 119 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSC--SSSSCCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCC--EECCEEEEEEE
Confidence 3567899999999999999999999999 669999865 489999999999999999 67877 89999999999
Q ss_pred ccccccc
Q 013267 78 SSHQELT 84 (446)
Q Consensus 78 ~~~~~~~ 84 (446)
+...+..
T Consensus 120 a~~~~~~ 126 (139)
T 2hgn_A 120 NSTTGAS 126 (139)
T ss_dssp CCCSCC-
T ss_pred CCCCCCC
Confidence 8775543
No 353
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.49 E-value=3.5e-14 Score=125.20 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=69.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHhccCcc--ceeEEEEEccC------CeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 4 PSKVIHVRNVGHEISENDLLQLFQPFG--VITKLVMLRAK------NQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 4 ~s~~l~v~~lp~~~te~~l~~~f~~~G--~i~~~~i~~~~------~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
..++|||+|||.++|+++|+++|++|| .|.+|+|+.++ |||||+|.+.++|.+||+.||+. .|.|++|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~--~~~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR--ELHGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS--CBTTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC--eECCEEeEE
Confidence 356799999999999999999999999 89999999773 89999999999999999999998 899999999
Q ss_pred Eecccc
Q 013267 76 QFSSHQ 81 (446)
Q Consensus 76 ~~~~~~ 81 (446)
.++.+.
T Consensus 145 ~~a~~~ 150 (229)
T 3q2s_C 145 TPVNKQ 150 (229)
T ss_dssp EECCHH
T ss_pred EECCCC
Confidence 998664
No 354
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.49 E-value=7.9e-14 Score=107.89 Aligned_cols=80 Identities=15% Similarity=0.279 Sum_probs=70.4
Q ss_pred CCccEEEEeCCCCCC----------CHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCe
Q 013267 361 SPTKMIHLSTLPQDV----------TEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI 430 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~----------t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~ 430 (446)
.|+++|.|.|+-..- .++||++.|++||.|.++.+.++..+|+|||+|.+.++|.+|++.|||..++||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 468999999994421 1579999999999999999986666999999999999999999999999999999
Q ss_pred EEEEeecCcc
Q 013267 431 IRISFSQLQS 440 (446)
Q Consensus 431 l~v~~a~~~~ 440 (446)
|+|+|+....
T Consensus 85 i~v~~~~~~~ 94 (114)
T 3s6e_A 85 ITAAYVPLPT 94 (114)
T ss_dssp CEEEEECHHH
T ss_pred EEEEEEcHHH
Confidence 9999997543
No 355
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=1.3e-13 Score=107.52 Aligned_cols=79 Identities=11% Similarity=0.221 Sum_probs=69.3
Q ss_pred CCccEEEEeCCCC--CC---CHHHHHHHhhccCCeeEEEEEeeC--------CceEEEEEeCCHHHHHHHHHHhCCCccC
Q 013267 361 SPTKMIHLSTLPQ--DV---TEEEIVSHLEEHGSIVNTKLFEMN--------GKKQALVLFETEEQATEALVCKHASSLG 427 (446)
Q Consensus 361 ~~~~~l~v~nlp~--~~---t~~~l~~~F~~~G~v~~~~i~~~~--------~~g~~fV~f~~~~~A~~A~~~l~~~~~~ 427 (446)
+|+++|+|.|+-. ++ .++||++.|++||.|.++.|+.++ ++|++||+|.+.++|.+|++.|||..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3789999999943 23 379999999999999999998552 2589999999999999999999999999
Q ss_pred CCeEEEEeecCc
Q 013267 428 GSIIRISFSQLQ 439 (446)
Q Consensus 428 g~~l~v~~a~~~ 439 (446)
||.|+|+|+...
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999998754
No 356
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=7.4e-14 Score=106.85 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=70.6
Q ss_pred CCCceEEEEcCC--CCCCC--------HHHHHHhccCccceeEEEEEcc--------CCeEEEEecChhHHHHHHHhhcc
Q 013267 2 TEPSKVIHVRNV--GHEIS--------ENDLLQLFQPFGVITKLVMLRA--------KNQALLQMQDVPSAINALQFYTN 63 (446)
Q Consensus 2 ~~~s~~l~v~~l--p~~~t--------e~~l~~~f~~~G~i~~~~i~~~--------~~~afV~F~~~~~A~~A~~~~~~ 63 (446)
.+||++|.|+|+ |.++. ++||++.|++||.|.+|.|.++ +|+|||+|.+.++|.+|++.||+
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 479999999998 55554 3799999999999999999864 58999999999999999999999
Q ss_pred CCceecCeEeEEEecccccc
Q 013267 64 VQPTIRGRNVYVQFSSHQEL 83 (446)
Q Consensus 64 ~~~~~~g~~i~v~~~~~~~~ 83 (446)
. .++|++|+|.|.+....
T Consensus 82 ~--~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 82 R--KFANRVVVTKYCDPDSY 99 (105)
T ss_dssp C--EETTEECEEEEECHHHH
T ss_pred C--EeCCCEEEEEEeCHHHH
Confidence 9 99999999999876543
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.2e-13 Score=106.03 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=68.2
Q ss_pred CCCceEEEEcCCCCCC-----------CHHHHHHhccCccceeEEEEEc--cCCeEEEEecChhHHHHHHHhhccCCcee
Q 013267 2 TEPSKVIHVRNVGHEI-----------SENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVPSAINALQFYTNVQPTI 68 (446)
Q Consensus 2 ~~~s~~l~v~~lp~~~-----------te~~l~~~f~~~G~i~~~~i~~--~~~~afV~F~~~~~A~~A~~~~~~~~~~~ 68 (446)
++||++|+|+||.... ++++|+++|++||.|.+|.|.. .+|+|||+|.+.++|.+|++.||+. .+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~--~~ 89 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGR--WF 89 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTC--EE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCC--EE
Confidence 4689999999994432 2689999999999999997742 2699999999999999999999998 89
Q ss_pred cCeEeEEEeccccc
Q 013267 69 RGRNVYVQFSSHQE 82 (446)
Q Consensus 69 ~g~~i~v~~~~~~~ 82 (446)
+|++|+|.++.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999987643
No 358
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.3e-14 Score=109.60 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=63.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEee-------CCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEE
Q 013267 361 SPTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEM-------NGKKQALVLFETEEQATEALVCKHASSLGGSIIRI 433 (446)
Q Consensus 361 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~-------~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 433 (446)
.++++|||+|||.++|+++|+++|++||.|. +.++.+ +.+|||||+|.+.++|++|++.|++ +.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 3568999999999999999999999999999 766532 3488999999999999999999954 67777777
Q ss_pred EeecC
Q 013267 434 SFSQL 438 (446)
Q Consensus 434 ~~a~~ 438 (446)
..+..
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 65543
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=5.3e-13 Score=114.41 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=68.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeecCc
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQ 439 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 439 (446)
+++|||+|||.++|+++|+++|++||.|.++.+..+. .+|||||+|.+.++|.+|++.++ ..+.|+.|.|.+++.-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 4799999999999999999999999999999998643 38899999999999999997765 4899999999998764
Q ss_pred c
Q 013267 440 S 440 (446)
Q Consensus 440 ~ 440 (446)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 360
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=108.33 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=62.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc---------CCeEEEEecChhHHHHHHHhhccCCceecCeEe
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA---------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNV 73 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~---------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i 73 (446)
.++++|||+|||+++|+++|+++|++||.|. +.++.+ +|||||+|.+.++|++|++.++ .++|+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~----~~~G~~~ 80 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL----EEDGKLY 80 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE----EETTEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh----hcCCcEE
Confidence 4678999999999999999999999999998 766543 5899999999999999999884 4788888
Q ss_pred EEEecc
Q 013267 74 YVQFSS 79 (446)
Q Consensus 74 ~v~~~~ 79 (446)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 777543
No 361
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.2e-13 Score=106.29 Aligned_cols=75 Identities=12% Similarity=0.122 Sum_probs=65.9
Q ss_pred cEEEEeCC----CCCCCHHHHHHHhhccCCeeEEEEEeeCC----ceEEEEEeCC----HHH----HHHHHH--HhCCCc
Q 013267 364 KMIHLSTL----PQDVTEEEIVSHLEEHGSIVNTKLFEMNG----KKQALVLFET----EEQ----ATEALV--CKHASS 425 (446)
Q Consensus 364 ~~l~v~nl----p~~~t~~~l~~~F~~~G~v~~~~i~~~~~----~g~~fV~f~~----~~~----A~~A~~--~l~~~~ 425 (446)
..|||+|| |..+++++|+.+|+.||.|.++.++.++. +|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 99999999999999999999999996643 8899999996 433 899988 789999
Q ss_pred cCCCeEEEEeecC
Q 013267 426 LGGSIIRISFSQL 438 (446)
Q Consensus 426 ~~g~~l~v~~a~~ 438 (446)
|+|++|+|.+-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998654
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=2.7e-13 Score=105.63 Aligned_cols=79 Identities=18% Similarity=0.348 Sum_probs=69.3
Q ss_pred CCceEEEEcCC--CCCC---CHHHHHHhccCccceeEEEEEccC----------CeEEEEecChhHHHHHHHhhccCCce
Q 013267 3 EPSKVIHVRNV--GHEI---SENDLLQLFQPFGVITKLVMLRAK----------NQALLQMQDVPSAINALQFYTNVQPT 67 (446)
Q Consensus 3 ~~s~~l~v~~l--p~~~---te~~l~~~f~~~G~i~~~~i~~~~----------~~afV~F~~~~~A~~A~~~~~~~~~~ 67 (446)
+||++|+|+|+ |.++ -++||++.|++||.|.+|.|.+++ |+|||+|.+.++|.+|++.||+. .
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr--~ 95 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR--W 95 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC--E
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC--E
Confidence 48999999998 4334 379999999999999999998652 78999999999999999999999 9
Q ss_pred ecCeEeEEEecccccc
Q 013267 68 IRGRNVYVQFSSHQEL 83 (446)
Q Consensus 68 ~~g~~i~v~~~~~~~~ 83 (446)
++|++|+|.|.+....
T Consensus 96 f~GR~i~v~~~~~~~f 111 (118)
T 3ue2_A 96 FAGRKVVAEVYDQERF 111 (118)
T ss_dssp ETTEECEEEEECHHHH
T ss_pred ECCcEEEEEEcChHhc
Confidence 9999999999866543
No 363
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.43 E-value=2.3e-13 Score=131.39 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc------CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA------KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 3 ~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~------~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
.++++|||+|||..+|+++|.++|++||.|+.|.|+.+ +|||||+|.+.++|.+||..||+. .|.|++|.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~--~i~gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK--KIDGRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC--EECCEEEEEE
Confidence 36689999999999999999999999999999999876 589999999999999999999998 8999999999
Q ss_pred eccccc
Q 013267 77 FSSHQE 82 (446)
Q Consensus 77 ~~~~~~ 82 (446)
++....
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 987643
No 364
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.41 E-value=4.8e-13 Score=114.65 Aligned_cols=73 Identities=11% Similarity=0.254 Sum_probs=66.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEecc
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~~ 79 (446)
+++|||+|||.++|+++|+++|++||.|.+|++.++ +|+|||+|.+.++|.+|+..++ . .++|++|.|.+..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~--~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-Q--KYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-C--EETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-C--eECCEEEEEEEhH
Confidence 589999999999999999999999999999999864 4899999999999999998765 3 6999999999865
Q ss_pred c
Q 013267 80 H 80 (446)
Q Consensus 80 ~ 80 (446)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 365
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.40 E-value=4.7e-13 Score=102.96 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=64.5
Q ss_pred eEEEEcCC----CCCCCHHHHHHhccCccceeEEEEEccC------CeEEEEecC----hhH----HHHHHH--hhccCC
Q 013267 6 KVIHVRNV----GHEISENDLLQLFQPFGVITKLVMLRAK------NQALLQMQD----VPS----AINALQ--FYTNVQ 65 (446)
Q Consensus 6 ~~l~v~~l----p~~~te~~l~~~f~~~G~i~~~~i~~~~------~~afV~F~~----~~~----A~~A~~--~~~~~~ 65 (446)
+.|||+|| |+.+++++|+++|++||+|.+|.++.|+ |+|||+|.+ +++ |.+|+. .+++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~- 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC- 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC-
Confidence 67999999 9999999999999999999999999885 999999996 433 888888 56777
Q ss_pred ceecCeEeEEEecccc
Q 013267 66 PTIRGRNVYVQFSSHQ 81 (446)
Q Consensus 66 ~~~~g~~i~v~~~~~~ 81 (446)
.++|++|+|.+.+..
T Consensus 82 -~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 -FIMGFKFEVILNKHS 96 (136)
T ss_dssp -EETTEEEEEEECCTT
T ss_pred -eecCcEEEEEECccc
Confidence 899999999986654
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.40 E-value=4.1e-13 Score=124.02 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=68.9
Q ss_pred cCCCccEEEEeC--CCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccC---CC--eE
Q 013267 359 CCSPTKMIHLST--LPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG---GS--II 431 (446)
Q Consensus 359 ~~~~~~~l~v~n--lp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~---g~--~l 431 (446)
...|+++|||+| |+..+|+++|+++|++||.|.++.+.+ +||||||+|.+.++|++|++.|||+.+. |+ .|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 346889999999 578999999999999999999987753 7999999999999999999999999883 45 78
Q ss_pred EEEeecC
Q 013267 432 RISFSQL 438 (446)
Q Consensus 432 ~v~~a~~ 438 (446)
.|+|++.
T Consensus 92 y~~~~~~ 98 (345)
T 3tht_A 92 YLNFVEK 98 (345)
T ss_dssp EEEECSS
T ss_pred EEEEeec
Confidence 9999864
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.1e-12 Score=97.27 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=64.4
Q ss_pred cEEEEeCCC-------CCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEee
Q 013267 364 KMIHLSTLP-------QDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFS 436 (446)
Q Consensus 364 ~~l~v~nlp-------~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 436 (446)
+.|.|.-.. ..+++++|+++|++||.|.++.++. +.+|||||+|.+.++|.+|++.+++ +.|++|+|.|+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 456665443 4589999999999999999999983 5699999999999999999998666 67999999999
Q ss_pred cCcccc
Q 013267 437 QLQSIR 442 (446)
Q Consensus 437 ~~~~~~ 442 (446)
+++..+
T Consensus 88 ~~~~~~ 93 (100)
T 2d9o_A 88 EGQPQD 93 (100)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 987643
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1.2e-12 Score=101.20 Aligned_cols=84 Identities=8% Similarity=0.188 Sum_probs=71.5
Q ss_pred CCCceEEEEcCC--CCCC--------CHHHHHHhccCccceeEEEEEcc--CCeEEEEecChhHHHHHHHhhccCCceec
Q 013267 2 TEPSKVIHVRNV--GHEI--------SENDLLQLFQPFGVITKLVMLRA--KNQALLQMQDVPSAINALQFYTNVQPTIR 69 (446)
Q Consensus 2 ~~~s~~l~v~~l--p~~~--------te~~l~~~f~~~G~i~~~~i~~~--~~~afV~F~~~~~A~~A~~~~~~~~~~~~ 69 (446)
+.||++|.|+|+ |.+. -++||++.|++||.|.+|.|.++ +|+|||+|.+.++|.+|++.||+. .++
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~--~f~ 81 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGR--WFA 81 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTC--EET
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCC--EEC
Confidence 458999999998 3331 24688999999999999999876 599999999999999999999999 999
Q ss_pred CeEeEEEecccccccccc
Q 013267 70 GRNVYVQFSSHQELTTME 87 (446)
Q Consensus 70 g~~i~v~~~~~~~~~~~~ 87 (446)
|++|+|.|+.........
T Consensus 82 GR~i~v~~~~~~~y~~~f 99 (114)
T 3s6e_A 82 GKMITAAYVPLPTYHNLF 99 (114)
T ss_dssp TEECEEEEECHHHHHHHC
T ss_pred CEEEEEEEEcHHHHHHhC
Confidence 999999998766554433
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=7.9e-13 Score=122.09 Aligned_cols=77 Identities=19% Similarity=0.381 Sum_probs=68.7
Q ss_pred CCCceEEEEcC--CCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCcee---cCe--EeE
Q 013267 2 TEPSKVIHVRN--VGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTI---RGR--NVY 74 (446)
Q Consensus 2 ~~~s~~l~v~~--lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~---~g~--~i~ 74 (446)
+.|+++|||+| |+.++||++|+++|++||.|.+|.+.++||||||+|.+.++|++|++.||+. .+ .|+ +++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~--~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK--EVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTC--EEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC--ccccccCCceEEE
Confidence 46999999998 5789999999999999999999999999999999999999999999999998 44 244 688
Q ss_pred EEeccc
Q 013267 75 VQFSSH 80 (446)
Q Consensus 75 v~~~~~ 80 (446)
+.|...
T Consensus 93 ~~~~~~ 98 (345)
T 3tht_A 93 LNFVEK 98 (345)
T ss_dssp EEECSS
T ss_pred EEEeec
Confidence 888643
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.36 E-value=2.3e-13 Score=103.93 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=58.4
Q ss_pred eCCCCCCCHHHHHHHh------------hccCCeeEEEEEeeC---CceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEE
Q 013267 369 STLPQDVTEEEIVSHL------------EEHGSIVNTKLFEMN---GKKQALVLFETEEQATEALVCKHASSLGGSIIRI 433 (446)
Q Consensus 369 ~nlp~~~t~~~l~~~F------------~~~G~v~~~~i~~~~---~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 433 (446)
.+||..+++++|++.| ++||.|.++.++.++ .+|+|||+|.+.++|.+|++.|||..+.||.|+|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 3455566666666555 999999999998653 3899999999999999999999999999999999
Q ss_pred Eee
Q 013267 434 SFS 436 (446)
Q Consensus 434 ~~a 436 (446)
+|+
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 997
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-11 Score=92.54 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=63.2
Q ss_pred CceEEEEcCCC-------CCCCHHHHHHhccCccceeEEEEEc-cCCeEEEEecChhHHHHHHHhhccCCceecCeEeEE
Q 013267 4 PSKVIHVRNVG-------HEISENDLLQLFQPFGVITKLVMLR-AKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYV 75 (446)
Q Consensus 4 ~s~~l~v~~lp-------~~~te~~l~~~f~~~G~i~~~~i~~-~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v 75 (446)
..++|.|.-.+ .++|+++|+++|++||.|.+|.+++ .+|||||+|.+.++|.+|++.++ .+.|++|+|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~----~~~g~~l~V 84 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV----GLVDNPLKI 84 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC----BCSSSBCEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC----CCCCCeEEE
Confidence 34567777765 4589999999999999999999984 57999999999999999999744 367999999
Q ss_pred Eeccccc
Q 013267 76 QFSSHQE 82 (446)
Q Consensus 76 ~~~~~~~ 82 (446)
+|+....
T Consensus 85 ~~a~~~~ 91 (100)
T 2d9o_A 85 SWLEGQP 91 (100)
T ss_dssp ECSSCCC
T ss_pred EEccCCC
Confidence 9987654
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.28 E-value=9.9e-13 Score=100.43 Aligned_cols=64 Identities=11% Similarity=0.237 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHhc------------cCccceeEEEEEcc-----CCeEEEEecChhHHHHHHHhhccCCceecCeEeEEE
Q 013267 14 GHEISENDLLQLF------------QPFGVITKLVMLRA-----KNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQ 76 (446)
Q Consensus 14 p~~~te~~l~~~f------------~~~G~i~~~~i~~~-----~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~ 76 (446)
|..+|+++|+++| ++||.|.+|.|+++ +|+|||+|.+.++|.+|++.||+. .++|++|+|+
T Consensus 24 ~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~--~~~Gr~i~v~ 101 (104)
T 1jmt_A 24 RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR--WFNGQPIHAE 101 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC--EETTEECCEE
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC--EECCEEEEEE
Confidence 3445666666555 99999999999976 599999999999999999999999 8999999999
Q ss_pred ecc
Q 013267 77 FSS 79 (446)
Q Consensus 77 ~~~ 79 (446)
|++
T Consensus 102 ~sp 104 (104)
T 1jmt_A 102 LSP 104 (104)
T ss_dssp ECC
T ss_pred EcC
Confidence 863
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-11 Score=88.69 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=67.5
Q ss_pred cCCCccEEEEeCCCC----CCCH----HHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCe
Q 013267 359 CCSPTKMIHLSTLPQ----DVTE----EEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI 430 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~----~~t~----~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~ 430 (446)
.+||..+|.|..++. .+-. .+|.+.|++||.|..+++..+ .+||+|.+.++|.+|++ |||..+.||.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 467888999988773 3333 789999999999999999853 39999999999999998 9999999999
Q ss_pred EEEEeecCcccc
Q 013267 431 IRISFSQLQSIR 442 (446)
Q Consensus 431 l~v~~a~~~~~~ 442 (446)
|+|.++++.=.+
T Consensus 78 LkV~lkt~dW~~ 89 (91)
T 2dnr_A 78 ITIALKSPSGPS 89 (91)
T ss_dssp EEEEECCCSSCS
T ss_pred EEEEeCCCCccc
Confidence 999999886443
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=4.5e-11 Score=86.00 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=67.0
Q ss_pred CCCCceEEEEcCCC----CCCCH----HHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeE
Q 013267 1 MTEPSKVIHVRNVG----HEISE----NDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRN 72 (446)
Q Consensus 1 ~~~~s~~l~v~~lp----~~~te----~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~ 72 (446)
|.||.-+|+|.-.| .++-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |++. .+.||.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~--~v~Gr~ 77 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGK--ELLNRT 77 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTC--EETTEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCe--EeCCeE
Confidence 57899999999987 34433 6788999999999999999986 8999999999999999 9999 899999
Q ss_pred eEEEecccc
Q 013267 73 VYVQFSSHQ 81 (446)
Q Consensus 73 i~v~~~~~~ 81 (446)
|+|+++.++
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999987653
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1e-10 Score=90.30 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=70.3
Q ss_pred CCceEEEEcCCCCC-CCHHHHHHhccCccceeEEEEEccCCeEEEEecC-hhHHHHHHHhhccCCceecCeEeEEEecc
Q 013267 3 EPSKVIHVRNVGHE-ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQD-VPSAINALQFYTNVQPTIRGRNVYVQFSS 79 (446)
Q Consensus 3 ~~s~~l~v~~lp~~-~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~-~~~A~~A~~~~~~~~~~~~g~~i~v~~~~ 79 (446)
++-.+|+|+||+.+ +|+++|+++|++||+|..|.+.++...|||+|.+ .++|.+|+..++.....|+|..+.++...
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 35678999999999 9999999999999999999999999999999999 89999999999877778999988888653
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=3.2e-10 Score=87.47 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCC-HHHHHHHHHHhC--CCccCCCeEEEEe
Q 013267 360 CSPTKMIHLSTLPQD-VTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFET-EEQATEALVCKH--ASSLGGSIIRISF 435 (446)
Q Consensus 360 ~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~-~~~A~~A~~~l~--~~~~~g~~l~v~~ 435 (446)
-++++.|||+||+.. +++++|+++|+.||.|.+|.+.. +...|||.|.+ ..+|..|++.+| +..|.|..+.++.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~--g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR--GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT--TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 356899999999999 99999999999999999999974 45589999999 899999999995 6788899888876
Q ss_pred ecC
Q 013267 436 SQL 438 (446)
Q Consensus 436 a~~ 438 (446)
.+-
T Consensus 93 L~G 95 (121)
T 1owx_A 93 LEG 95 (121)
T ss_dssp CCH
T ss_pred CCC
Confidence 553
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=2.3e-10 Score=82.70 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=64.7
Q ss_pred CCCCceEEEEcCCCCC-----CCH----HHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCe
Q 013267 1 MTEPSKVIHVRNVGHE-----ISE----NDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGR 71 (446)
Q Consensus 1 ~~~~s~~l~v~~lp~~-----~te----~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~ 71 (446)
|.||.-+|+|.-++.+ +-. .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|++ +++. .+.||
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~--~v~Gr 85 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGM--KVKGR 85 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGS--EETTE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCe--eeCCe
Confidence 5789999999998743 333 5688999999999999999997 9999999999999999 9999 99999
Q ss_pred EeEEEec
Q 013267 72 NVYVQFS 78 (446)
Q Consensus 72 ~i~v~~~ 78 (446)
.|+|++-
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999974
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1.9e-10 Score=83.04 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=63.8
Q ss_pred cCCCccEEEEeCCCCC-----CCH----HHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 013267 359 CCSPTKMIHLSTLPQD-----VTE----EEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGS 429 (446)
Q Consensus 359 ~~~~~~~l~v~nlp~~-----~t~----~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~ 429 (446)
.+||..+|.|..++.. +-. .+|.+.|+.||.|..+++..+ -+||+|.+.++|.+|++ |||..+.||
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 5788899999988742 322 679999999999999999843 29999999999999998 999999999
Q ss_pred eEEEEeec
Q 013267 430 IIRISFSQ 437 (446)
Q Consensus 430 ~l~v~~a~ 437 (446)
.|+|.+..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998754
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.89 E-value=5.3e-09 Score=91.94 Aligned_cols=79 Identities=11% Similarity=0.201 Sum_probs=66.4
Q ss_pred ccEEEEeCCCC-----CCCHHHHHHHhhccCCeeEEEEEee--------CCceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 013267 363 TKMIHLSTLPQ-----DVTEEEIVSHLEEHGSIVNTKLFEM--------NGKKQALVLFETEEQATEALVCKHASSLGGS 429 (446)
Q Consensus 363 ~~~l~v~nlp~-----~~t~~~l~~~F~~~G~v~~~~i~~~--------~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~ 429 (446)
+.++.+.|+-. +-.+++|++.|++||.|.++.|..+ .++|++||+|.+.++|.+|++.|||+.+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 45666766643 3457899999999999999999743 2378999999999999999999999999999
Q ss_pred eEEEEeecCccc
Q 013267 430 IIRISFSQLQSI 441 (446)
Q Consensus 430 ~l~v~~a~~~~~ 441 (446)
.|.++|+.....
T Consensus 204 ~i~~~~~~~~~f 215 (222)
T 3dxb_A 204 KVVAEVYDQERF 215 (222)
T ss_dssp BCEEEECCHHHH
T ss_pred EEEEEEcCHHHh
Confidence 999999875543
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.70 E-value=7.9e-08 Score=70.65 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=66.5
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhccc-----CceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEE
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLY-----GNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 325 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~-----G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~ 325 (446)
.++|-+.||| |++++..|+.+.+++ |.+..+.+..+ .+-|+|+|.+...|.+|.-.|+|..|.|+.|++.-
T Consensus 21 ~rtiaL~~ip-DtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLS-DKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCC-TTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCC-CCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 5689999999 799999999999999 99999999888 67899999999999999999999999999999973
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=5.6e-08 Score=71.46 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=66.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhcc-----CCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEE
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEH-----GSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRIS 434 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~-----G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 434 (446)
..++|-|-|||+.++++.|+.+..++ |.+..+.+.+ +.+-|+|+|.+...|-+|.-.|+|..|+|+.|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 46899999999999999999999999 9999998874 57889999999999999999999999999999985
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=5e-08 Score=85.62 Aligned_cols=78 Identities=15% Similarity=0.278 Sum_probs=63.9
Q ss_pred CceEEEEcCCC-----CCCCHHHHHHhccCccceeEEEEEc----------cCCeEEEEecChhHHHHHHHhhccCCcee
Q 013267 4 PSKVIHVRNVG-----HEISENDLLQLFQPFGVITKLVMLR----------AKNQALLQMQDVPSAINALQFYTNVQPTI 68 (446)
Q Consensus 4 ~s~~l~v~~lp-----~~~te~~l~~~f~~~G~i~~~~i~~----------~~~~afV~F~~~~~A~~A~~~~~~~~~~~ 68 (446)
+++.+.+.++- .+-.+++|++.|++||.|.++.|.+ .+|++||+|.+.++|.+|+..||+. .+
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr--~~ 200 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR--WF 200 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC--BS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc--eE
Confidence 44556665542 2235789999999999999999983 3489999999999999999999999 99
Q ss_pred cCeEeEEEecccccc
Q 013267 69 RGRNVYVQFSSHQEL 83 (446)
Q Consensus 69 ~g~~i~v~~~~~~~~ 83 (446)
+||+|.+.|.+....
T Consensus 201 ~gr~i~~~~~~~~~f 215 (222)
T 3dxb_A 201 AGRKVVAEVYDQERF 215 (222)
T ss_dssp SSSBCEEEECCHHHH
T ss_pred CCeEEEEEEcCHHHh
Confidence 999999999876543
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.16 E-value=4.4e-06 Score=61.48 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=64.9
Q ss_pred ccEEEEeCCCCCC-C----HHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCeEEEEeec
Q 013267 363 TKMIHLSTLPQDV-T----EEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQ 437 (446)
Q Consensus 363 ~~~l~v~nlp~~~-t----~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 437 (446)
.++|.|.||+.++ . .+.++++|..|+......++ ++-.=..|.|.++++|.+|...||+..+.|+.|+|.|++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l--kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF--KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE--TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec--CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4689999998754 2 37889999999999887776 454457999999999999999999999999999999998
Q ss_pred Ccc
Q 013267 438 LQS 440 (446)
Q Consensus 438 ~~~ 440 (446)
+-.
T Consensus 83 ~~~ 85 (104)
T 1wey_A 83 TLH 85 (104)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.4e-05 Score=58.43 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=58.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccC-----ccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQP-----FGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~-----~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
-++|.|.|||++++++-|.-+|+. -|+|.++.... +.|+|+|.+.+.|++.++. ..+.++|.+|.|...
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k---~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ---ADHELHGAQLSLRPA 81 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC---SCCBSSSSBCEEEEC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC---CcceecCeEEEEEcC
Confidence 478999999999999999999964 37799999988 6899999999999999873 244799999999853
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=1.4e-05 Score=58.76 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=63.9
Q ss_pred ceEEEeCCCCCCCCH----HHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEecCC
Q 013267 254 CTVLVSNLNSDRIDE----DKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHP 329 (446)
Q Consensus 254 ~~l~v~nl~~~~~~~----~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~~~ 329 (446)
++|+|.||+++.... +.+.++|..|+++.....++. =.-..|.|.+.++|.+|-..|++..|.|+.+++.++.+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 389999998642233 467899999999988888766 346899999999999999999999999999999999854
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=0.00012 Score=53.51 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=57.7
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhcc-----cCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 254 CTVLVSNLNSDRIDEDKLFNLFSL-----YGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 254 ~~l~v~nl~~~~~~~~~l~~~F~~-----~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
.+|.|.|||+ .++++.|.-+|+. -|.|..+.... +.|+|+|.+...|++.++ -..+.|.+..|.|....
T Consensus 9 ~~I~V~~lPp-~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 9 VAVEVRGLPP-AVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp CEEEEESCCT-TSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred cEEEEECCCC-CCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 4899999997 6999999999977 25888888764 799999999999999988 33678889999997644
No 387
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.78 E-value=5.8e-05 Score=54.64 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=47.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhc
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~ 62 (446)
+.+++| +.|+++...||.++|++||.| .|+.+.|. .|||.|.+.+.|..|++.+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-eEEEEecCHHHHHHHHHhcc
Confidence 345666 999999999999999999955 77888775 69999999999999999764
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.75 E-value=6.6e-05 Score=54.13 Aligned_cols=55 Identities=25% Similarity=0.405 Sum_probs=47.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhc
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~ 62 (446)
+.+++| +.|+++...||.++|++||.| .|+.+.|. .|||.|.+.+.|..|++.+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-eEEEEecCHHHHHHHHHhcc
Confidence 356666 999999999999999999965 67777775 69999999999999999764
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.69 E-value=0.00023 Score=51.50 Aligned_cols=59 Identities=10% Similarity=0.197 Sum_probs=50.1
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC--------CeEEEEecChhHHHHHHHhhccC
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK--------NQALLQMQDVPSAINALQFYTNV 64 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~--------~~afV~F~~~~~A~~A~~~~~~~ 64 (446)
+.|.||.||+++||+++.+.+.+...+.-...+.++ .-|||.|.+.+++....+.+++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 468999999999999999999999876555555543 34999999999999999998887
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.45 E-value=0.0014 Score=47.39 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=59.7
Q ss_pred eEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-------CCeEEEEeCCHHHHHHHHHHhcCCeeCCc-----EEE
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-------PDHALVQMGDGFQAELAVHFLKGALLFGK-----RLE 322 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-------~g~afV~f~~~~~A~~A~~~lng~~~~g~-----~l~ 322 (446)
.|.|.+||| ++|++++.+.++....+.....+..+ .+.|||.|.+.+++..-.+.++|..|.+. .-.
T Consensus 3 KvVIRrLPP-~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 3 KVVIRRLPP-TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp EEEEEEECT-TCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred EEEEeCCCC-CCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 799999998 79999999999999988777776644 45899999999999999999999998542 334
Q ss_pred EEEec
Q 013267 323 VNFSK 327 (446)
Q Consensus 323 v~~~~ 327 (446)
|+++.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55544
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.40 E-value=0.00034 Score=50.49 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=47.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhC
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 422 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~ 422 (446)
..+++| ++|.++...||.++|+.||.| .|.+++ ...|||.|.+++.|..|++.++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 357777 999999999999999999955 567774 4589999999999999999774
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.39 E-value=0.00074 Score=51.19 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=58.1
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCC-cEEEEEEe
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFG-KRLEVNFS 326 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g-~~l~v~~~ 326 (446)
.+-|.|.++|+ ...+.|...|++||.|.+... ....+...|+|.+..+|++|+. .||..+.| -.|-|.+.
T Consensus 24 ~~wVtVFGFp~--~~~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQ--ASASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCG--GGHHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCH--HHHHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 45899999996 468899999999999988876 3337899999999999999999 79999975 45555554
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.27 E-value=0.00032 Score=50.79 Aligned_cols=54 Identities=19% Similarity=0.374 Sum_probs=46.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhC
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKH 422 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~ 422 (446)
.+++| ++|.++...||.++|++||.| .+.+++ ...|||.|.+++.|..|++.++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 56777 999999999999999999944 577774 4589999999999999999875
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.23 E-value=0.00066 Score=49.35 Aligned_cols=60 Identities=10% Similarity=0.235 Sum_probs=45.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC--------CeEEEEecChhHHHHHHHhhccC
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK--------NQALLQMQDVPSAINALQFYTNV 64 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~--------~~afV~F~~~~~A~~A~~~~~~~ 64 (446)
|-.|.||.||+++||+++.+.+.++-.+.....+.++ ..|||.|.+.++.....+.+++.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 5579999999999999999888776443211112221 34999999999999999988876
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.14 E-value=0.0023 Score=48.45 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=53.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCCCccCCCe
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSI 430 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~~~~~g~~ 430 (446)
.+-|-|-+.|.. ....|.+.|++||.|.+... ..+.++-.|.|.+..+|++||. .||..+.|..
T Consensus 24 ~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 24 DTWVTVFGFPQA-SASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp GGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 467888889887 57889999999999988776 2457799999999999999994 5999998643
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.56 E-value=0.00098 Score=63.68 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=43.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccC-CeEEEEecChhHHHHHHHh
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAK-NQALLQMQDVPSAINALQF 60 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~-~~afV~F~~~~~A~~A~~~ 60 (446)
-|+|+|. .|...++.+|.++|++||+|.++.+.+++ .||.|||.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4889998 79999999999999999999999999886 4799999999999987664
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.30 E-value=0.012 Score=42.66 Aligned_cols=73 Identities=11% Similarity=0.134 Sum_probs=55.2
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCC-------CCeEEEEeCCHHHHHHHHHHhcCCeeCCc-----EE
Q 013267 254 CTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNK-------PDHALVQMGDGFQAELAVHFLKGALLFGK-----RL 321 (446)
Q Consensus 254 ~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~-------~g~afV~f~~~~~A~~A~~~lng~~~~g~-----~l 321 (446)
-.|.|..||| ++|++++.+.++..-.+.....+..+ ...|||.|.+.++...-.+.++|..|.+. +-
T Consensus 10 ~KvVIRrLPP-~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 10 HMVVIRRLPP-GLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCEEEECCCS-CSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred eeEEEeCCCC-CCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 3899999999 79999998888776655443333322 45899999999999999999999888542 44
Q ss_pred EEEEec
Q 013267 322 EVNFSK 327 (446)
Q Consensus 322 ~v~~~~ 327 (446)
.|+++.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 455543
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.20 E-value=0.0056 Score=47.00 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=56.6
Q ss_pred cceEEEeCCCCCCCCHHHHHHHhcccCceEE-EEEee------------------CCCCeEEEEeCCHHHHHHHHHHhcC
Q 013267 253 RCTVLVSNLNSDRIDEDKLFNLFSLYGNIIR-IKLLR------------------NKPDHALVQMGDGFQAELAVHFLKG 313 (446)
Q Consensus 253 ~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~-v~i~~------------------~~~g~afV~f~~~~~A~~A~~~lng 313 (446)
.+.|.|.+.|+ .....+.+.|++||.|.. +.... ...+...|+|++..+|.+|++ .||
T Consensus 7 e~~VtVFGFp~--~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 7 ELAILVFGYPE--TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp -CEEEEECCCG--GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred ceEEEEEecCH--HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 44788999995 578889999999999865 21110 014688999999999999999 999
Q ss_pred CeeCCcEEEEEEec
Q 013267 314 ALLFGKRLEVNFSK 327 (446)
Q Consensus 314 ~~~~g~~l~v~~~~ 327 (446)
..|.|.-|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877777654
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.20 E-value=0.0027 Score=60.68 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=42.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCc-eEEEEEeCCHHHHHHHHHH
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGK-KQALVLFETEEQATEALVC 420 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~-g~~fV~f~~~~~A~~A~~~ 420 (446)
.+.|+|. +|...++++|.++|++||.|.++.... ++ .|+.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~--~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE--SFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC--SSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc--cCCeEEEEEeCCHHHHHHHHhc
Confidence 4789997 799999999999999999999998874 44 4999999999999977643
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.08 E-value=0.0044 Score=47.61 Aligned_cols=78 Identities=13% Similarity=0.350 Sum_probs=57.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEE-EEE----------------ee-CCceEEEEEeCCHHHHHHHHHHhCCCc
Q 013267 364 KMIHLSTLPQDVTEEEIVSHLEEHGSIVNT-KLF----------------EM-NGKKQALVLFETEEQATEALVCKHASS 425 (446)
Q Consensus 364 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~-~i~----------------~~-~~~g~~fV~f~~~~~A~~A~~~l~~~~ 425 (446)
.-|-|-+.|.+ ....+.+.|++||.|.+- ... +- .+.+|..|.|++..+|.+|+ .-||..
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 35667678654 567788899999999662 111 00 13559999999999999999 779999
Q ss_pred cCCCeEEEEeecCccccc
Q 013267 426 LGGSIIRISFSQLQSIRE 443 (446)
Q Consensus 426 ~~g~~l~v~~a~~~~~~~ 443 (446)
+.|.-|-|..-++..+++
T Consensus 86 i~G~mIGV~Py~~~~ve~ 103 (132)
T 3p3d_A 86 FNGVLLGVIPYTKDAVER 103 (132)
T ss_dssp ETTEECEEEECCHHHHHH
T ss_pred eCcEEEEEEECCHHHHHH
Confidence 999888887766655543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.08 E-value=0.28 Score=47.90 Aligned_cols=57 Identities=25% Similarity=0.379 Sum_probs=47.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhccC
Q 013267 5 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNV 64 (446)
Q Consensus 5 s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~ 64 (446)
+.+++|+ .|+.|...+|.+.|+.||.+ +|..+.+. .|||.|.+.++|..+++.++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-EEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-eEEEEECCHHHHHHHHHHHHhC
Confidence 4567776 99999999999999999955 67766654 6999999999999999988644
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.48 E-value=0.65 Score=45.26 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=47.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCC
Q 013267 363 TKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 423 (446)
Q Consensus 363 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~ 423 (446)
+.+++|+ +|..|...+|.++|+.||.| +|.++ +...|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 3567776 99999999999999999954 56666 466899999999999999999864
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.11 E-value=9.2 Score=25.98 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=44.2
Q ss_pred eEEEeCCCCCCCCHHHHHHHhcccC-----ceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEEec
Q 013267 255 TVLVSNLNSDRIDEDKLFNLFSLYG-----NIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSK 327 (446)
Q Consensus 255 ~l~v~nl~~~~~~~~~l~~~F~~~G-----~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~~~ 327 (446)
+++|..=-.+.+...+|..++..-+ .|-.+.+. ..+.||+-. ...|..+++.|++..+.|+.+.++.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~---d~~s~v~v~-~~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM---DNASYVEIL-NGKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC---SSCEEEEEC-TTCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe---CCcEEEEEC-HHHHHHHHHHhccccCcCceEEEEECC
Confidence 4555443334677778877776555 45567775 448999984 455888999999999999999888654
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=74.35 E-value=19 Score=25.05 Aligned_cols=69 Identities=12% Similarity=0.233 Sum_probs=52.5
Q ss_pred CCcceEEEeCCCCCCCCHHHHHHHhcccCceEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcCCeeCCcEEEEEE
Q 013267 251 NDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNF 325 (446)
Q Consensus 251 ~~~~~l~v~nl~~~~~~~~~l~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng~~~~g~~l~v~~ 325 (446)
..+|.|.|-|+|. .+-..++--.....|---.|... .|.|.+.|.+.++...|++.|-+. .+..+.++.
T Consensus 10 kqnclikiinipq-gtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQ-GTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCT-TCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCC-CceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 4567899999995 57777777777888877777665 578999999999999999987433 234555543
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=68.18 E-value=27 Score=24.27 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=48.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEeeCCceEEEEEeCCHHHHHHHHHHhCC
Q 013267 362 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHA 423 (446)
Q Consensus 362 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~fV~f~~~~~A~~A~~~l~~ 423 (446)
..+.|.|-|+|..+-.+++--.-...|---.|..+ .|.|.+.|.+.++-.-|+..|-+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi----dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI----DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC----SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee----cCeeEEEecCChHHHHHHHHHHh
Confidence 45889999999999998887777777776677776 57899999999999999977643
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=42.91 E-value=51 Score=26.48 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=36.7
Q ss_pred cEEEEeCCCC-C--------CCHHHHHHHh--hccCCeeEEEEEeeCC-ceEEEEEeCCHHHH
Q 013267 364 KMIHLSTLPQ-D--------VTEEEIVSHL--EEHGSIVNTKLFEMNG-KKQALVLFETEEQA 414 (446)
Q Consensus 364 ~~l~v~nlp~-~--------~t~~~l~~~F--~~~G~v~~~~i~~~~~-~g~~fV~f~~~~~A 414 (446)
..+.|.|+|. . .+..+|++.| +.|..+.-.-+....+ .|++.|.|..--..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHH
Confidence 4667888887 2 3458999977 9999887555553333 77999999975443
No 407
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=37.76 E-value=37 Score=22.82 Aligned_cols=58 Identities=14% Similarity=0.262 Sum_probs=36.9
Q ss_pred CCCHHHHHHhccCccc-----eeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEec
Q 013267 16 EISENDLLQLFQPFGV-----ITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFS 78 (446)
Q Consensus 16 ~~te~~l~~~f~~~G~-----i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~~ 78 (446)
.+...+|..+++.-+. |-.+.+..+ +.||+-. .+.|.++++.++.. .++|+++.++.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~-~~~~~~~~~~l~~~--~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEIL-NGKGPHVLKVMKNT--TVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEEC-TTCHHHHHHHHTTC--CC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEEC-HHHHHHHHHHhccc--cCcCceEEEEEC
Confidence 3666777777764433 445666554 8998884 45677888888887 799999988764
No 408
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=30.31 E-value=83 Score=22.57 Aligned_cols=65 Identities=11% Similarity=0.188 Sum_probs=49.1
Q ss_pred EcCCCCCCCHHHHHHhcc-CccceeEEEEEccCCeEEEEecChhHHHHHHHhhccCCceecCeEeEEEe
Q 013267 10 VRNVGHEISENDLLQLFQ-PFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQF 77 (446)
Q Consensus 10 v~~lp~~~te~~l~~~f~-~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~~~~~~~~g~~i~v~~ 77 (446)
|-.+|..+.-+||..... -||.-.++... .+...|--.+.+|--+|+..|.... .+++-+|.+..
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~--n~EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~ 86 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT--NNELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVI 86 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC--SSSSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEE
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe--cceEEEeccCHHHHHHHHHHHccCC-cccceEEEEec
Confidence 345678899999998775 56887777777 3468999999999999999987762 45565555543
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.24 E-value=89 Score=25.09 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=31.6
Q ss_pred EEEEcCCCCC---------CCHHHHHHhc--cCccceeEEEEEccC---CeEEEEecCh
Q 013267 7 VIHVRNVGHE---------ISENDLLQLF--QPFGVITKLVMLRAK---NQALLQMQDV 51 (446)
Q Consensus 7 ~l~v~~lp~~---------~te~~l~~~f--~~~G~i~~~~i~~~~---~~afV~F~~~ 51 (446)
.+.|-|+|.+ .+..+|++.| +.|.++.-..+.... |+|.|+|.+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCC
Confidence 4567788872 4568999977 999987533333333 6799999984
No 410
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.27 E-value=23 Score=27.87 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=18.9
Q ss_pred HHHHHHhccCccceeEEEEEccCCeEEEEecC
Q 013267 19 ENDLLQLFQPFGVITKLVMLRAKNQALLQMQD 50 (446)
Q Consensus 19 e~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~ 50 (446)
++|+.+++...|.|+ +....+||+||+-.+
T Consensus 1 ~~~~~~l~~~~G~Vk--wfn~~kGfGFI~~~~ 30 (148)
T 3ts2_A 1 AADEPQLLHGAGICK--WFNVRMGFGFLSMTA 30 (148)
T ss_dssp -----CCEEEEEEEE--EEETTTTEEEEEEEE
T ss_pred CCcccccccceeEEE--EEECCCCeeEEeeCc
Confidence 456778888888664 445678999999863
No 411
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.65 E-value=1.4e+02 Score=19.16 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=42.2
Q ss_pred eEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecChhHHHHHHHhhc
Q 013267 6 KVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYT 62 (446)
Q Consensus 6 ~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~~~A~~A~~~~~ 62 (446)
.++.|.++.=.-=...|...+.. ..|..+.+.-..+.+.|+|.+.++..++++.+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHHcC
Confidence 46778887665567888888888 778888887777788899886666777777554
No 412
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.60 E-value=1.7e+02 Score=20.52 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=25.7
Q ss_pred eEEEEEeeCCCCeEEEEeCCHHHHHHHHHHhcC
Q 013267 281 IIRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 313 (446)
Q Consensus 281 v~~v~i~~~~~g~afV~f~~~~~A~~A~~~lng 313 (446)
|..+.+...-+||.||++...++...+++...|
T Consensus 40 i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecccCCEEEEEEecchhHHHHHHCCCC
Confidence 666655544499999999999998888886655
No 413
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=20.09 E-value=1.7e+02 Score=18.32 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=45.6
Q ss_pred CCCCceEEEEcCCCCCCCHHHHHHhccCccceeEEEEEccCCeEEEEecCh----hHHHHHHHhh
Q 013267 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDV----PSAINALQFY 61 (446)
Q Consensus 1 ~~~~s~~l~v~~lp~~~te~~l~~~f~~~G~i~~~~i~~~~~~afV~F~~~----~~A~~A~~~~ 61 (446)
|......+.|.++.-.--...|...+.....|.++.+....+.+.|.|... ++...++..+
T Consensus 1 m~~~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 65 (75)
T 1yjr_A 1 MGDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESL 65 (75)
T ss_dssp CCCCCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHH
T ss_pred CCceEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 666777889999877666788888888887788888888888899999642 3334555544
Done!