BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013268
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 33 RSYKRQDL-EIRNARGHVLQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLP 91
+S QDL + NA G L C ++ P+ TP + HG E A +L+
Sbjct: 12 QSIPYQDLPHLVNADGQYLFCRYWAPT----GTPKALIFVSHGAGEHSGRYEELARMLMG 67
Query: 92 SNITLFTLDFSGSGLSDGDYVSLG-WH--EKDDLKVVVSYLRGNKQTSRIGLWGRSMGAV 148
++ +F D G G S+G+ + + +H +D L+ V S ++ + + L G SMG
Sbjct: 68 LDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDS-MQKDYPGLPVFLLGHSMGGA 126
Query: 149 TSLLYGAEDPS-IAGMVLDS 167
++L AE P AGMVL S
Sbjct: 127 IAILTAAERPGHFAGMVLIS 146
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 33 RSYKRQDL-EIRNARGHVLQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLP 91
+S QDL + NA G L C ++ P+ TP + HG E A +L+
Sbjct: 29 QSIPYQDLPHLVNADGQYLFCRYWKPT----GTPKALIFVSHGAGEHSGRYEELARMLMG 84
Query: 92 SNITLFTLDFSGSGLSDGDYVSLG-WH--EKDDLKVVVSYLRGNKQTSRIGLWGRSMGAV 148
++ +F D G G S+G+ + + +H +D L+ V S ++ + + L G SMG
Sbjct: 85 LDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDS-MQKDYPGLPVFLLGHSMGGA 143
Query: 149 TSLLYGAEDPS-IAGMVLDSAF 169
++L AE P AGMVL S
Sbjct: 144 IAILTAAERPGHFAGMVLISPL 165
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 33 RSYKRQDL-EIRNARGHVLQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLP 91
+S QDL + NA G L C ++ P+ TP + HG E A +L+
Sbjct: 30 QSIPYQDLPHLVNADGQYLFCRYWKPT----GTPKALIFVSHGAGEHSGRYEELARMLMG 85
Query: 92 SNITLFTLDFSGSGLSDGDYVSLG-WH--EKDDLKVVVSYLRGNKQTSRIGLWGRSMGAV 148
++ +F D G G S+G+ + + +H +D L+ V S ++ + + L G SMG
Sbjct: 86 LDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDS-MQKDYPGLPVFLLGHSMGGA 144
Query: 149 TSLLYGAEDPS-IAGMVLDS 167
++L AE P AGMVL S
Sbjct: 145 IAILTAAERPGHFAGMVLIS 164
>pdb|2FUK|A Chain A, Crystal Structure Of Xc6422 From Xanthomonas Campestris: A
Member Of AB SERINE HYDROLASE WITHOUT LID AT 1.6
Resolution
Length = 220
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 56 MPSPFPEDTPLPCVVYCH-----GNSGCRADANEAAVILLPSNITLFTLDFSGSGLSDGD 110
+P P P+ +V CH G S AA L IT+ +F G S G
Sbjct: 28 LPEPDVAVQPVTAIV-CHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS 86
Query: 111 YVSLGWHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGA 155
+ G E+DDL+ V ++R + T + L G S GA SL A
Sbjct: 87 F-DHGDGEQDDLRAVAEWVRAQRPTDTLWLAGFSFGAYVSLRAAA 130
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 50 LQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADA--NEAAVILLPSNITLFTLDFSGSGLS 107
LQ PF E + + HG + R + E A L NI DF+G G S
Sbjct: 32 LQLVGTREEPFGEIYDMAIIF--HGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDS 89
Query: 108 DGDYVSLG-WHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVT-SLLYGAEDPSIAGMVL 165
DG + ++ +E +D +++Y++ + I L G S G V S+L G I +VL
Sbjct: 90 DGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVL 149
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 82/223 (36%), Gaps = 32/223 (14%)
Query: 57 PSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLPSNITLFTLDFSGSGLSDGDYVSLG- 115
P PF + V+ HG +G AD L T + G G+ + V G
Sbjct: 7 PKPFFFEAGERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGP 66
Query: 116 --WHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSA----- 168
W + D+ +L+ NK +I + G S+G V SL G P I G+V A
Sbjct: 67 DDWWQ--DVMNGYEFLK-NKGYEKIAVAGLSLGGVFSLKLGYTVP-IEGIVTMCAPMYIK 122
Query: 169 -FSDLFDLMLELVDVYKIRLPKFTVKMAVQYMRRVIQKKAKFDIMDLNCLKLAPK----- 222
+++ +LE YK R K ++ Q+ KF + LK +
Sbjct: 123 SEETMYEGVLEYAREYKKREGKSE--------EQIEQEMEKFKQTPMKTLKALQELIADV 174
Query: 223 ------TFIPALFGHASEDKFIRARHSDLIFNAYAGDKNIIKF 259
+ P A D+ I +++I+N IK+
Sbjct: 175 RDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQIKW 217
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 50 LQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADA--NEAAVILLPSNITLFTLDFSGSGLS 107
LQ PF E + + HG + R + E A L NI DF+G G S
Sbjct: 32 LQLVGTREEPFGEIYDMAIIF--HGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDS 89
Query: 108 DGDYVSLG-WHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVT-SLLYGAEDPSIAGMVL 165
DG + ++ +E +D +++Y++ + I L G + G V S+L G I +VL
Sbjct: 90 DGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVL 149
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 50 LQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADA--NEAAVILLPSNITLFTLDFSGSGLS 107
LQ PF E + + HG + R + E A L NI DF+G G S
Sbjct: 32 LQLVGTREEPFGEIYDMAIIF--HGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDS 89
Query: 108 DGDYVSLG-WHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVT-SLLYGAEDPSIAGMVL 165
DG + ++ +E +D +++Y++ + I L G + G V S+L G I +VL
Sbjct: 90 DGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVL 149
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 33 RSYKRQDL-EIRNARGHVLQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLP 91
+S QDL + NA G L C ++ P+ TP + HG E A L
Sbjct: 29 QSIPYQDLPHLVNADGQYLFCRYWKPT----GTPKALIFVSHGAGEHSGRYEELARXLXG 84
Query: 92 SNITLFTLDFSGSGLSDGD-YVSLGWH--EKDDLKVVVSYLRGNKQTSRIGLWGRSMGAV 148
++ +F D G G S+G+ V +H +D L+ V S + + + L G S G
Sbjct: 85 LDLLVFAHDHVGHGQSEGERXVVSDFHVFVRDVLQHVDSXQK-DYPGLPVFLLGHSXGGA 143
Query: 149 TSLLYGAEDPS-IAGMVLDS 167
++L AE P AG VL S
Sbjct: 144 IAILTAAERPGHFAGXVLIS 163
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 17/159 (10%)
Query: 121 DLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPS-IAGMVL---DSAFSDLFDLM 176
D K V ++ K ++ L G S G +T+L+ A+ PS I MV+ ++ +D ++
Sbjct: 80 DAKDAVDLMKALK-FKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMI 138
Query: 177 LELV-DVYK----IRLPKFTVKMAVQYMRRVIQK-----KAKFDIMDLN-CLKLAPKTFI 225
E + DV K R P Y R +K + + D N C L P+
Sbjct: 139 YEGIRDVSKWSERTRKP-LEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQC 197
Query: 226 PALFGHASEDKFIRARHSDLIFNAYAGDKNIIKFDGDHN 264
PAL H +D + H+D I G + + +G HN
Sbjct: 198 PALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHN 236
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 32/223 (14%)
Query: 57 PSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLPSNITLFTLDFSGSGLSDGDYVSLG- 115
P PF + V+ HG +G AD L T +SG G+ G
Sbjct: 6 PKPFFFEAGERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAPIYSGHGVPPEALTRFGP 65
Query: 116 --WHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSA----- 168
W + D+ +L+ NK +I + G S+G V SL G P I G+V A
Sbjct: 66 EAWWQ--DVMNGYEFLK-NKGYEKIAVAGLSLGGVFSLKLGYTVP-IEGIVTMCAPMYIK 121
Query: 169 -FSDLFDLMLELVDVYKIRLPKFTVKMAVQYMRRVIQKKAKFDIMDLNCLKLAPK----- 222
+++ +LE YK R K ++ Q+ KF + LK +
Sbjct: 122 SEETMYEGVLEYAREYKKREGKSE--------EQIEQEMEKFKQTPMLTLKALQELIADV 173
Query: 223 ------TFIPALFGHASEDKFIRARHSDLIFNAYAGDKNIIKF 259
+ P A D+ I +++I+N IK+
Sbjct: 174 RDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQIKW 216
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 17/159 (10%)
Query: 121 DLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPS-IAGMVL---DSAFSDLFDLM 176
D K V ++ K ++ L G S G +T+L+ A+ PS I MV+ ++ +D ++
Sbjct: 80 DAKDAVDLMKALK-FKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMI 138
Query: 177 LELV-DVYK----IRLPKFTVKMAVQYMRRVIQK-----KAKFDIMDLN-CLKLAPKTFI 225
E + DV K R P Y R +K + + D N C L P+
Sbjct: 139 YEGIRDVSKWSERTRKP-LEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQC 197
Query: 226 PALFGHASEDKFIRARHSDLIFNAYAGDKNIIKFDGDHN 264
PAL H +D + H+D I G + + +G HN
Sbjct: 198 PALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHN 236
>pdb|1R1D|A Chain A, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
pdb|1R1D|B Chain B, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
Length = 247
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 57 PSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLPSNITLFTLDFSGSGLSDGDYVSLG- 115
P PF + V+ HG +G AD L T + G G+ + V G
Sbjct: 7 PKPFFFEAGERAVLLLHGFTGNSADVRXLGRFLESKGYTCHAPIYKGHGVPPEELVHTGP 66
Query: 116 --WHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSA 168
W + D+ +L+ NK +I + G S+G V SL G P I G+V A
Sbjct: 67 DDWWQ--DVXNGYQFLK-NKGYEKIAVAGLSLGGVFSLKLGYTVP-IEGIVTXCA 117
>pdb|4I19|A Chain A, The Crystal Structure Of An Epoxide Hydrolase From
Streptomyces Carzinostaticus Subsp. Neocarzinostaticus
Length = 388
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 76/197 (38%), Gaps = 45/197 (22%)
Query: 15 AEYNPDQYLW---ERDFMLAGRSYKRQDLEIRNARGHVLQCSHYMPSPFPEDTPLPCVVY 71
AEY D + W ER Y + EI A H L SP P+ TP V
Sbjct: 49 AEYWRDGFDWRAAERRI----NQYPQFTTEIDGATIHFLHVR----SPEPDATP---XVI 97
Query: 72 CHGNSGC--------------RA---DANEAAVILLPSNITLFTLDFSGSGLSDGDYVSL 114
HG G RA D +A +++PS G GLS G S
Sbjct: 98 THGWPGTPVEFLDIIGPLTDPRAHGGDPADAFHLVIPS--------LPGFGLS-GPLKSA 148
Query: 115 GWHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPS-IAGM---VLDSAFS 170
GW E + S L + R G +GA TSLL GA DPS +AG+ +L + S
Sbjct: 149 GW-ELGRIAXAWSKLXASLGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQTNLS 207
Query: 171 DLFDLMLELVDVYKIRL 187
+ L D K RL
Sbjct: 208 GEPGELETLSDADKARL 224
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 17/159 (10%)
Query: 121 DLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPS-IAGMVL---DSAFSDLFDLM 176
D K V ++ K ++ L G + G +T+L+ A+ PS I MV+ ++ +D ++
Sbjct: 80 DAKDAVDLMKALK-FKKVSLLGWADGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMI 138
Query: 177 LELV-DVYK----IRLPKFTVKMAVQYMRRVIQK-----KAKFDIMDLN-CLKLAPKTFI 225
E + DV K R P Y R +K + + D N C L P+
Sbjct: 139 YEGIRDVSKWSERTRKP-LEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQC 197
Query: 226 PALFGHASEDKFIRARHSDLIFNAYAGDKNIIKFDGDHN 264
PAL H +D + H+D I G + + +G HN
Sbjct: 198 PALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHN 236
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 82/226 (36%), Gaps = 45/226 (19%)
Query: 60 FPEDTPLPCVVYCHGNSGCRADANEAAVILLPSNITLFTLDFSGSGLSDGDYVSLGWHE- 118
+ E+ P+ V+ HG +G A + T+ G G D +H+
Sbjct: 35 YAENGPV-GVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDW 93
Query: 119 KDDLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPSIAGMV-------------- 164
++ +L+ QT I + G SMG +L P I G+V
Sbjct: 94 VASVEEGYGWLKQRCQT--IFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAG 151
Query: 165 ----------LDSAFSDLFDLMLELVDVYKIRLPKFTVKMAVQYMRRVIQKKAKFDIMDL 214
LDS SDL + DV ++ K +Q R + Q KAK D
Sbjct: 152 MTGGGELPRYLDSIGSDLKN-----PDVKELAYEKTPTASLLQLARLMAQTKAKLD---- 202
Query: 215 NCLKLAPKTFIPALFGHASEDKFIRARHSDLIFNAYAG-DKNIIKF 259
+ PAL + ED + ++D+IF + +K I++
Sbjct: 203 -------RIVCPALIFVSDEDHVVPPGNADIIFQGISSTEKEIVRL 241
>pdb|2X0K|A Chain A, Crystal Structure Of Modular Fad Synthetase From
Corynebacterium Ammoniagenes
pdb|2X0K|B Chain B, Crystal Structure Of Modular Fad Synthetase From
Corynebacterium Ammoniagenes
Length = 338
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 149 TSLLYGAEDPSIAGMVLDSAFSDLF--DLMLELVDVYKIRLPKF-TVKMAVQYMRRVIQK 205
T+ +G E S+ VLD +DL+ D+ +E VD + + KF +V+ ++ M + +QK
Sbjct: 256 TNPTFGDEQRSVESFVLDRD-ADLYGHDVKVEFVDHVRA-MEKFDSVEQLLEVMAKDVQK 313
Query: 206 KAKFDIMDLNCLKLAPKTF 224
D+ K+AP+T+
Sbjct: 314 TRTLLAQDVQAHKMAPETY 332
>pdb|3ZUG|A Chain A, E268d Mutant Of Fad Synthetase From Corynebacterium
Ammoniagenes
pdb|3ZUG|B Chain B, E268d Mutant Of Fad Synthetase From Corynebacterium
Ammoniagenes
Length = 338
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 149 TSLLYGAEDPSIAGMVLDSAFSDLF--DLMLELVDVYKIRLPKF-TVKMAVQYMRRVIQK 205
T+ +G E S+ VLD +DL+ D+ +E VD + + KF +V+ ++ M + +QK
Sbjct: 256 TNPTFGDEQRSVDSFVLDRD-ADLYGHDVKVEFVDHVRA-MEKFDSVEQLLEVMAKDVQK 313
Query: 206 KAKFDIMDLNCLKLAPKTF 224
D+ K+AP+T+
Sbjct: 314 TRTLLAQDVQAHKMAPETY 332
>pdb|3M75|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 262 DHNSSRPQFYYDSVSIFFYNVLHPPQIPSTHSIKAEKYYDLGALKFGASMDQSLLYE 318
+ S+ P FY +V+ S S+ Y+DLG L FGA M +++E
Sbjct: 134 EQKSTHPSFYLPAVA---------ANFTSASSLALLGYHDLGYLFFGAGMIAWIIFE 181
>pdb|3M74|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 262 DHNSSRPQFYYDSVSIFFYNVLHPPQIPSTHSIKAEKYYDLGALKFGASMDQSLLYE 318
+ S+ P FY +V+ S S+ Y+DLG L FGA M +++E
Sbjct: 134 EQKSTHPSFYLPAVA---------ANFTSASSLALLGYHDLGYLFFGAGMIAWIIFE 181
>pdb|3M73|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 262 DHNSSRPQFYYDSVSIFFYNVLHPPQIPSTHSIKAEKYYDLGALKFGASMDQSLLYE 318
+ S+ P FY +V+ S S+ Y+DLG L FGA M +++E
Sbjct: 134 EQKSTHPSFYLPAVA---------ANFTSASSLALLGYHDLGYLFFGAGMIAWIIFE 181
>pdb|3M78|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 262 DHNSSRPQFYYDSVSIFFYNVLHPPQIPSTHSIKAEKYYDLGALKFGASMDQSLLYE 318
+ S+ P FY +V+ S S+ Y+DLG L FGA M +++E
Sbjct: 134 EQKSTHPSFYLPAVA---------ANFTSASSLALLGYHDLGYLFFGAGMIAWIIFE 181
>pdb|3M77|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 262 DHNSSRPQFYYDSVSIFFYNVLHPPQIPSTHSIKAEKYYDLGALKFGASMDQSLLYE 318
+ S+ P FY +V+ S S+ Y+DLG L FGA M +++E
Sbjct: 134 EQKSTHPSFYLPAVA---------ANFTSASSLALLGYHDLGYLFFGAGMIAWIIFE 181
>pdb|3M71|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
pdb|3M7B|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
pdb|3M7C|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
pdb|3M7E|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 262 DHNSSRPQFYYDSVSIFFYNVLHPPQIPSTHSIKAEKYYDLGALKFGASMDQSLLYE 318
+ S+ P FY +V+ S S+ Y+DLG L FGA M +++E
Sbjct: 134 EQKSTHPSFYLPAVA---------ANFTSASSLALLGYHDLGYLFFGAGMIAWIIFE 181
>pdb|3M76|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 262 DHNSSRPQFYYDSVSIFFYNVLHPPQIPSTHSIKAEKYYDLGALKFGASMDQSLLYE 318
+ S+ P FY +V+ S S+ Y+DLG L FGA M +++E
Sbjct: 134 EQKSTHPSFYLPAVA---------ANFTSASSLALLGYHDLGYLFFGAGMIAWIIFE 181
>pdb|3M72|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 262 DHNSSRPQFYYDSVSIFFYNVLHPPQIPSTHSIKAEKYYDLGALKFGASMDQSLLYE 318
+ S+ P FY +V+ S S+ Y+DLG L FGA M +++E
Sbjct: 134 EQKSTHPSFYLPAVA---------ANFTSASSLALLGYHDLGYLFFGAGMIAWIIFE 181
>pdb|2YHG|A Chain A, Ab Initio Phasing Of A Nucleoside Hydrolase-Related
Hypothetical Protein From Saccharophagus Degradans That
Is Associated With Carbohydrate Metabolism
Length = 437
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 81 DANEAAVILLPSNITLFTLDFSGSGLSDGDYVSLGW 116
DANEA + L S + +LD SGS DGD ++ W
Sbjct: 341 DANEAVMYLNASAGSTVSLDASGSSDPDGDSLNYSW 376
>pdb|3F4M|A Chain A, Crystal Structure Of Tipe2
Length = 161
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 122 LKVVVSYLRGNKQTSRIGLWGR-----SMGAVTSLLYGAEDPSIAGMVLDSAFSDLFDLM 176
+KV V + G+ S + L R GA+T+L +G D + VL ++ D++
Sbjct: 45 IKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVL 104
Query: 177 LELVD 181
LELV+
Sbjct: 105 LELVE 109
>pdb|2JBW|A Chain A, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|B Chain B, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|C Chain C, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|D Chain D, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase
Length = 386
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Query: 65 PLPCVVYCHGNSGCRADANEAAVILLPSNITLFTLDFSGSGLSDGDYVSLGWHEKDDLKV 124
P P V+ G + ++ + ++L T D G G G +EK V
Sbjct: 151 PHPAVIXLGGLESTKEESFQXENLVLDRGXATATFDGPGQGEXFEYKRIAGDYEKYTSAV 210
Query: 125 V--VSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSDL 172
V ++ L + + IG+ GRS+G +L A +P +A + FSDL
Sbjct: 211 VDLLTKLEAIRNDA-IGVLGRSLGGNYALKSAACEPRLAACISWGGFSDL 259
>pdb|1JKG|B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear
Export Factor
pdb|1JN5|B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export
Factor
Length = 250
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 39 DLEIRNARGHVLQCSHYMPSPFPEDTPLPCV 69
+L +RNA +Q + MP+P P +P+P +
Sbjct: 164 ELFVRNASSEEIQRAFAMPAPTPSSSPVPTL 194
>pdb|2Y3T|A Chain A, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|B Chain B, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|C Chain C, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|D Chain D, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 1033
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 227 ALFGHASEDKFIRARHSDLIFNAYAGDKNIIKFDGDHNSSRPQF 270
AL + F R HS +I +A D+ ++KF D+N RPQF
Sbjct: 444 ALGSETTASVFGRELHSYVITDAIR-DEKVLKFKVDYNDVRPQF 486
>pdb|2W74|B Chain B, Mutant (K220r) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2W74|D Chain D, Mutant (K220r) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 875
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 227 ALFGHASEDKFIRARHSDLIFNAYAGDKNIIKFDGDHNSSRPQF 270
AL + F R HS +I +A D+ ++KF D+N RPQF
Sbjct: 433 ALGSETTASVFGRELHSYVITDA-IRDEKVLKFKVDYNDVRPQF 475
>pdb|2RAU|A Chain A, Crystal Structure Of A Putative Lipase (Np_343859.1) From
Sulfolobus Solfataricus At 1.85 A Resolution
Length = 354
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 121 DLKVVVSYLRGNKQTSRIGLWGRSMGAVTSL----LYGAEDPSIAGMVL 165
D+K VVS+++ + RI L G S G + +L LY D I G++L
Sbjct: 129 DIKEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKND--IKGLIL 175
>pdb|2W00|A Chain A, Crystal Structure Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2W00|B Chain B, Crystal Structure Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 1038
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 227 ALFGHASEDKFIRARHSDLIFNAYAGDKNIIKFDGDHNSSRPQF 270
AL + F R HS +I +A D+ ++KF D+N RPQF
Sbjct: 444 ALGSETTASVFGRELHSYVITDAIR-DEKVLKFKVDYNDVRPQF 486
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,653,617
Number of Sequences: 62578
Number of extensions: 503330
Number of successful extensions: 931
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 35
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)