Your job contains 1 sequence.
>013270
MAKINKVKKLKQATTSQKPNKKILKKEPKSLKKPEPPPVAAAAAAATSSSCSSSSESESE
PESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQ
ESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQ
LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTG
KSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQ
KQQQPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGGFLVNPGLINPMVAG
ALHQGAIPASNVGAMAGSSVLGSFGPGAAQGLQQQQHVYPNAPQSKSQGTGGGSFPGYTS
YMWYGLLSLLDLLFVYIFVNFDLLHA
The BLAST search returned 12 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013270
(446 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2063177 - symbol:AT2G41060 species:3702 "Arabi... 566 7.8e-55 1
TAIR|locus:2103670 - symbol:UBA2A "UBP1-associated protei... 545 1.3e-52 1
TAIR|locus:2086325 - symbol:AT3G15010 species:3702 "Arabi... 482 4.7e-48 2
TAIR|locus:2055956 - symbol:UBA1A species:3702 "Arabidops... 359 7.5e-42 2
TAIR|locus:2055951 - symbol:AT2G22100 species:3702 "Arabi... 300 8.8e-32 2
TAIR|locus:2047685 - symbol:AT2G19380 species:3702 "Arabi... 326 1.6e-31 2
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 248 1.9e-24 2
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 248 1.9e-24 2
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 248 1.9e-24 2
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 248 1.9e-24 2
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 245 1.9e-24 2
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 245 1.9e-24 2
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 245 1.9e-24 2
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 246 3.0e-24 2
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 244 4.9e-24 2
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 248 1.3e-23 2
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 245 1.6e-23 2
UNIPROTKB|Q5ZIH1 - symbol:HNRNPD "Uncharacterized protein... 240 5.4e-23 2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 224 1.2e-21 2
UNIPROTKB|A5D9H5 - symbol:HNRPD "Heterogeneous nuclear ri... 248 3.9e-21 1
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 245 8.0e-21 1
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 244 1.0e-20 1
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 219 1.1e-20 2
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 226 2.8e-19 2
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 224 1.4e-18 1
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 223 1.7e-18 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 218 1.8e-18 2
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 221 2.8e-18 1
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 220 3.6e-18 1
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 220 3.6e-18 1
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 219 4.7e-18 1
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 219 4.7e-18 1
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 219 4.7e-18 1
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 220 7.0e-18 2
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 219 1.5e-17 2
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 219 1.5e-17 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 218 2.2e-17 2
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 212 3.3e-17 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 212 3.3e-17 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 211 4.4e-17 2
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 205 5.6e-17 2
UNIPROTKB|D6RAF8 - symbol:HNRNPD "Heterogeneous nuclear r... 210 5.7e-17 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 219 1.1e-16 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 206 1.1e-16 2
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 222 1.3e-16 1
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 214 1.7e-16 2
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 218 2.8e-16 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 216 2.9e-16 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 222 3.4e-16 1
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 203 3.7e-16 1
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein... 203 3.7e-16 1
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 218 4.1e-16 1
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 218 4.1e-16 1
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 218 4.1e-16 1
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 218 4.1e-16 1
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r... 212 4.2e-16 1
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu... 215 4.3e-16 1
UNIPROTKB|Q3SWU3 - symbol:Hnrpdl "Heterogeneous nuclear r... 215 4.3e-16 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 212 5.2e-16 1
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 205 5.5e-16 2
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 212 5.9e-16 1
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri... 211 6.0e-16 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 212 6.2e-16 1
WB|WBGene00022235 - symbol:sqd-1 species:6239 "Caenorhabd... 197 7.4e-16 2
UNIPROTKB|F1N3T3 - symbol:F1N3T3 "Uncharacterized protein... 194 7.7e-16 2
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 203 9.5e-16 2
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 212 1.0e-15 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 212 1.0e-15 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 212 1.0e-15 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 212 1.0e-15 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 212 1.0e-15 1
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 212 1.0e-15 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 212 1.0e-15 1
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 209 1.2e-15 2
UNIPROTKB|G5E5V7 - symbol:G5E5V7 "Uncharacterized protein... 211 1.4e-15 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 212 1.4e-15 1
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 198 1.4e-15 1
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 198 1.4e-15 1
UNIPROTKB|F1M6U1 - symbol:F1M6U1 "Uncharacterized protein... 198 1.4e-15 1
UNIPROTKB|F1NCV5 - symbol:HNRPDL "Heterogeneous nuclear r... 212 1.6e-15 1
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 208 1.7e-15 2
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 211 1.7e-15 1
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 208 1.8e-15 2
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 208 1.8e-15 2
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 208 1.8e-15 2
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 210 2.0e-15 1
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 213 2.0e-15 1
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 207 2.4e-15 2
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 196 2.4e-15 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 186 2.6e-15 2
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 212 2.7e-15 1
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 212 2.8e-15 1
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 212 2.8e-15 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 203 2.9e-15 2
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 203 2.9e-15 2
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 208 3.0e-15 1
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 213 3.0e-15 1
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 212 3.1e-15 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 205 3.3e-15 2
UNIPROTKB|D6RF44 - symbol:HNRNPD "Heterogeneous nuclear r... 194 4.2e-15 1
WARNING: Descriptions of 732 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 113/210 (53%), Positives = 147/210 (70%)
Query: 75 KDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIE 134
KDQL+ L+ AA + + + I AD D+ RKIFVHGLGWDT +SL+ AF GEIE
Sbjct: 96 KDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIE 155
Query: 135 ECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPT--GPGVK 192
+CK V+DKV+G++KG+ FI+FK+R A ALK PQ+K+ RM +CQLAS+GP P V
Sbjct: 156 DCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIGPVQGNPVVA 215
Query: 193 E-QGAAAQG-ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
Q + +RKIYVSNV D++ +KL FF RFGEIE GP+G D TG+ +GFA+FVY
Sbjct: 216 PAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVY 275
Query: 251 KTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
+++E A+KALEEP K FEGH L C KA +G
Sbjct: 276 RSLESAKKALEEPHKTFEGHVLHCHKANDG 305
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
QRKI+V + D + LL F GEIEE L +DK TG+ KGFA V+++ ++A KAL
Sbjct: 226 QRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285
Query: 166 KNPQRKVNNRMASCQLASVGP 186
+ P + + C A+ GP
Sbjct: 286 EEPHKTFEGHVLHCHKANDGP 306
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 109/216 (50%), Positives = 144/216 (66%)
Query: 75 KDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIE 134
K+Q++ L+ AA K + + I E AD D RKIFVHGLGWDT E+L+ AF GEIE
Sbjct: 108 KEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIE 167
Query: 135 ECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQ 194
+CK V DK++GK+KG+ FI++K+R A ALK PQ+K+ +RM +CQLAS GP G
Sbjct: 168 DCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIA 227
Query: 195 GAAAQG----------ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRG 244
AA ++KIYVSNV +++ +KL FF +FGEIE GP+G D TG+ +G
Sbjct: 228 AAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKG 287
Query: 245 FAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
F +FVYK+ E A++ALEEP K FEGH L CQKA +G
Sbjct: 288 FCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Score = 176 (67.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 43/113 (38%), Positives = 61/113 (53%)
Query: 82 IAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVID 141
IAAAA P H + T Q+KI+V +G + + LL F GEIEE L +D
Sbjct: 226 IAAAAVSAPAQHSNSEHT------QKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLD 279
Query: 142 KVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQ 194
K TG+ KGF V+K+ ++A +AL+ P + + CQ A GP PG ++Q
Sbjct: 280 KYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPK-PGKQQQ 331
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 482 (174.7 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 96/206 (46%), Positives = 135/206 (65%)
Query: 76 DQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEE 135
DQL+DL+ A + P + + + TAD D+SQRK+F+ GL DTT E L S F G++EE
Sbjct: 44 DQLLDLLQEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEE 103
Query: 136 CKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQG 195
+++DKVTGK+KG+ F+ F A+ ALK P +K++ R+ QLA+ G G G +
Sbjct: 104 AIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQ--- 160
Query: 196 AAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEG 255
A RKIYV+NVP D+ ++L F +G++E GP+GFD TGKSRGFA+FVYKT EG
Sbjct: 161 IADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEG 220
Query: 256 ARKALEEPQKMFEGHQLQCQKAAEGK 281
A+ AL +P K+ +G L C+ A +GK
Sbjct: 221 AQAALADPVKVIDGKHLNCKLAVDGK 246
Score = 177 (67.4 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 38/105 (36%), Positives = 61/105 (58%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D+S RKI+V + +D + LL+ F G++EE L DKVTGK++GFA V+KT + A
Sbjct: 163 DISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQ 222
Query: 163 KALKNPQRKVNNRMASCQLASVGPTG--PGVKEQGAAAQGERKIY 205
AL +P + ++ + +C+LA G G PG+ + G ++
Sbjct: 223 AALADPVKVIDGKHLNCKLAVDGKKGGKPGMPQAQDGGSGHGHVH 267
Score = 144 (55.7 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+RK+++ + D E LR F +G++E + D TGKS+G+ + V+GA AL
Sbjct: 74 QRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLAL 133
Query: 261 EEPQKMFEGHQLQCQKAAEGKNRT 284
+EP K +G Q AA G T
Sbjct: 134 KEPSKKIDGRVTVTQLAASGNQGT 157
Score = 37 (18.1 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 400 PNAPQSKSQGTGGGSFPG 417
P PQ++ G+G G G
Sbjct: 251 PGMPQAQDGGSGHGHVHG 268
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 359 (131.4 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 66/116 (56%), Positives = 90/116 (77%)
Query: 75 KDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIE 134
KDQL+DL+ +A+ ++ ++E ADRDV+ RKIFV+GL W+TT+E+L+ F G GEIE
Sbjct: 72 KDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIE 131
Query: 135 ECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPG 190
EC +VIDK TGKAKGF F++FKTRK A +ALK P++++ NR A+CQLAS+GP G
Sbjct: 132 ECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGPAASG 187
Score = 164 (62.8 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 37/103 (35%), Positives = 56/103 (54%)
Query: 179 CQLASVGPT-GPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDI 237
C + +G + V E RKI+V +P + +E L G FE +GEIE + D
Sbjct: 80 CSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDK 139
Query: 238 TTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
TGK++GF ++KT +GA++AL+EP+K CQ A+ G
Sbjct: 140 ATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMG 182
Score = 101 (40.6 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 31/91 (34%), Positives = 43/91 (47%)
Query: 340 MHPLYGGFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFGPXXXXXXXXXXHVY 399
M+P+ G L + GL + MV + G +VGA AG S LGS+ Y
Sbjct: 261 MYPMLAGALAHGGLGSDMVQSSQMGGIGVDPSVGA-AGLSALGSY-----FRGQSLPSTY 314
Query: 400 PNAPQSKSQGTG------GGSFPGYTSYMWY 424
P++ +GTG G SF GY++Y WY
Sbjct: 315 PDSDAGGKRGTGKDSDAGGSSFHGYSNYSWY 345
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 300 (110.7 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 60/105 (57%), Positives = 76/105 (72%)
Query: 75 KDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIE 134
K++LI+LI A K L + E+ADRD SQR IFV GLGWDTT E+L +AF GEI
Sbjct: 131 KEELINLIYKTAEKGSKLISAVFESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEIT 190
Query: 135 ECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASC 179
EC +V+DK TG+AKGF F++FKTRK A ALKNP++++ NR SC
Sbjct: 191 ECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSC 235
Score = 132 (51.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 191 VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
V E +R I+V + D E L+ FE +GEI + D TG+++GF ++
Sbjct: 152 VFESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
Query: 251 KTVEGARKALEEPQKMFEGHQLQCQKA 277
KT +GAR AL+ P+K + C A
Sbjct: 212 KTRKGARAALKNPEKRMYNRTVSCLPA 238
Score = 64 (27.6 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 338 PGMHPLYGGFLVNP---GLINPMV--AGALHQGAI-PASNVGAMAGSSV 380
PG +P+YG + NP GL N + +G ++QG + P +++G M G V
Sbjct: 308 PGFNPMYGAMMGNPMVAGLQNYRMFGSGMMNQGPMMPPNHMG-MVGQYV 355
>TAIR|locus:2047685 [details] [associations]
symbol:AT2G19380 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00076 PROSITE:PS50102 SMART:SM00355
SMART:SM00360 SMART:SM00451 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC003058 eggNOG:NOG253936 InterPro:IPR014898
Pfam:PF08790 HSSP:Q60900 IPI:IPI00545777 PIR:T01286
RefSeq:NP_565450.1 UniGene:At.50083 ProteinModelPortal:O64571
SMR:O64571 PRIDE:O64571 EnsemblPlants:AT2G19380.1 GeneID:816456
KEGG:ath:AT2G19380 TAIR:At2g19380 HOGENOM:HOG000114996
InParanoid:O64571 OMA:ESADRDI PhylomeDB:O64571
ProtClustDB:CLSN2914947 ArrayExpress:O64571 Genevestigator:O64571
Uniprot:O64571
Length = 613
Score = 326 (119.8 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 66/123 (53%), Positives = 87/123 (70%)
Query: 75 KDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIE 134
K++L++LI A K L ILE+ADRD++QR IFV G GWDTTQE+L +AF GEIE
Sbjct: 376 KEELVNLIYKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIE 435
Query: 135 ECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQ 194
EC +V+DK TG+ KG+ F++FKTRK A +ALK P++++ NR+ C LAS P G KEQ
Sbjct: 436 ECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLASEKP-GKAGKEQ 494
Query: 195 GAA 197
A
Sbjct: 495 DMA 497
Score = 138 (53.6 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+R I+V D +E L+ FE +GEIE + D TG+ +G+ ++KT +GAR+AL
Sbjct: 407 QRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREAL 466
Query: 261 EEPQKMFEGHQLQCQKAAE 279
+ P+K + C A+E
Sbjct: 467 KRPEKRMYNRIVVCNLASE 485
Score = 49 (22.3 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 336 QHPGMHPLYGGFLVNP---GLINPMVAGA---LHQGA-IPASNVGAMAG 377
Q PG P+YG N GL N + G+ +QG+ +P N MAG
Sbjct: 552 QFPGFDPMYGALSGNQMLAGLPNYGMFGSGMMTNQGSMLPPPNHLGMAG 600
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 248 (92.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 51/166 (30%), Positives = 89/166 (53%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 35 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 94
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 95 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 144
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K+R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 145 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 190
Score = 137 (53.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 130 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 189
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 190 KKYHNVG--LSKCEI 202
Score = 126 (49.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 30/113 (26%), Positives = 56/113 (49%)
Query: 177 ASCQLASVGPTGPGVKEQGA---AAQGER---KIYVSNVPRDVEKEKLRGFFERFGEIET 230
A+ AS G G + +GA A++ E K+++ + D K+ L+ +F +FGE+
Sbjct: 14 AATAAASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVD 73
Query: 231 GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
+ D TG+SRGF ++K E K +++ + G + ++A K +
Sbjct: 74 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 126
Score = 46 (21.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 409 GTGGGSFPGYTSYMWYG 425
G GG + GY +Y YG
Sbjct: 262 GYGGYDYTGYNNYYGYG 278
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 248 (92.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 54/164 (32%), Positives = 89/164 (54%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Score = 137 (53.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 242 KKYHNVG--LSKCEI 254
Score = 124 (48.7 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
Score = 46 (21.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 409 GTGGGSFPGYTSYMWYG 425
G GG + GY +Y YG
Sbjct: 314 GYGGYDYTGYNNYYGYG 330
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 248 (92.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 54/164 (32%), Positives = 89/164 (54%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Score = 137 (53.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 242 KKYHNVG--LSKCEI 254
Score = 124 (48.7 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
Score = 46 (21.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 409 GTGGGSFPGYTSYMWYG 425
G GG + GY +Y YG
Sbjct: 314 GYGGYDYTGYNNYYGYG 330
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 248 (92.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 54/164 (32%), Positives = 89/164 (54%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Score = 137 (53.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 242 KKYHNVG--LSKCEI 254
Score = 124 (48.7 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
Score = 46 (21.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 409 GTGGGSFPGYTSYMWYG 425
G GG + GY +Y YG
Sbjct: 314 GYGGYDYTGYNNYYGYG 330
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 245 (91.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 53/164 (32%), Positives = 89/164 (54%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 89 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 196
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 197 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Score = 137 (53.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 240 KKYHNVG--LSKCEI 252
Score = 120 (47.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 24/97 (24%), Positives = 48/97 (49%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FG++ + D TG+SRGF
Sbjct: 80 SSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFG 139
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 140 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 176
Score = 49 (22.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 409 GTGGGSFPGYTSYMWYG 425
G GG + GY SY YG
Sbjct: 312 GYGGYDYTGYNSYYGYG 328
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 245 (91.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 53/164 (32%), Positives = 89/164 (54%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 89 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 196
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 197 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Score = 137 (53.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 240 KKYHNVG--LSKCEI 252
Score = 120 (47.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 24/97 (24%), Positives = 48/97 (49%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FG++ + D TG+SRGF
Sbjct: 80 SSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFG 139
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 140 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 176
Score = 49 (22.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 409 GTGGGSFPGYTSYMWYG 425
G GG + GY SY YG
Sbjct: 312 GYGGYDYTGYNSYYGYG 328
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 245 (91.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 50/166 (30%), Positives = 89/166 (53%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 66 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFK 125
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 126 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 175
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K+R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 176 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 221
Score = 137 (53.3 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 161 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 221 KKYHNVG--LSKCEI 233
Score = 115 (45.5 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 26/105 (24%), Positives = 52/105 (49%)
Query: 185 GPTGPGVKEQGA---AAQGER---KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDIT 238
G G + +GA A++ E K+++ + D K+ L+ +F +FG++ + D
Sbjct: 53 GTEGGSTEAEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPI 112
Query: 239 TGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
TG+SRGF ++K E K +++ + G + ++A K +
Sbjct: 113 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 157
Score = 49 (22.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 409 GTGGGSFPGYTSYMWYG 425
G GG + GY SY YG
Sbjct: 293 GYGGYDYTGYNSYYGYG 309
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 246 (91.7 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 53/165 (32%), Positives = 87/165 (52%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
E A + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 88 EAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE 147
Query: 158 RKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEK 217
++ K + + K+N ++ + A T VK KI+V + D +EK
Sbjct: 148 SESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEK 197
Query: 218 LRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 198 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Score = 137 (53.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 242 KKYHNVG--LSKCEI 254
Score = 127 (49.8 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 26/97 (26%), Positives = 49/97 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E AA + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
Score = 46 (21.3 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 409 GTGGGSFPGYTSYMWYG 425
G GG + GY +Y YG
Sbjct: 314 GYGGYDYTGYNNYYGYG 330
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 244 (91.0 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 50/166 (30%), Positives = 90/166 (54%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+FV GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 44 IDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFK 103
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 104 EAESVEKVITQKEHKLNGKVIDPKKAKAMKTKEPVK----------KIFVGGLSPDTPEE 153
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K+R +F+ +GE+E+ + + T K RGF +K E +K +E+
Sbjct: 154 KIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEK 199
Score = 121 (47.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
+ E K++V + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K
Sbjct: 51 EDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEK 110
Query: 259 ALEEPQKMFEGHQLQCQKAAEGKNR 283
+ + + G + +KA K +
Sbjct: 111 VITQKEHKLNGKVIDPKKAKAMKTK 135
Score = 118 (46.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + F GE+E +L ++ T K +GF FI FK + K ++
Sbjct: 139 KKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIME 198
Query: 167 NPQRKVNNRMASCQL 181
+ ++ C++
Sbjct: 199 KKYHNIG--LSKCEV 211
Score = 46 (21.3 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 409 GTGGGSFPGYTSYMWYG 425
G GG + GY +Y YG
Sbjct: 273 GYGGYDYSGYNNYYGYG 289
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 248 (92.4 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 54/164 (32%), Positives = 89/164 (54%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 24 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 81
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 82 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 131
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 132 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 175
Score = 137 (53.3 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 115 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 174
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 175 KKYHNVG--LSKCEI 187
Score = 124 (48.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 15 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 74
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 75 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 111
Score = 38 (18.4 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 409 GTGGGSFPGYTSYMWYG 425
G GG + GY +Y YG
Sbjct: 247 GYGGYDYTGYNNY--YG 261
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 245 (91.3 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 51/155 (32%), Positives = 84/155 (54%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE
Sbjct: 61 KEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGAFGE 110
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+E+ + D T K RGF +K E +K +E+
Sbjct: 111 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 145
Score = 131 (51.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 85 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 144
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 145 KKYHNVG--LSKCEI 157
Score = 113 (44.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 21/81 (25%), Positives = 42/81 (51%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K+++ + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K +++
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
+ G + ++A K +
Sbjct: 61 KEHKLNGKVIDPKRAKAMKTK 81
Score = 40 (19.1 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 409 GTGGGSFPGYTSYMWY 424
G GG + GY +Y Y
Sbjct: 217 GYGGYDYTGYNNYYGY 232
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 240 (89.5 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 50/154 (32%), Positives = 83/154 (53%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE+
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGAFGEV 110
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
E+ + D T K RGF +K E +K +E+
Sbjct: 111 ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Score = 131 (51.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 143
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 144 KKYHNVG--LSKCEI 156
Score = 108 (43.1 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 20/80 (25%), Positives = 41/80 (51%)
Query: 204 IYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263
+++ + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K +++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 264 QKMFEGHQLQCQKAAEGKNR 283
+ G + ++A K +
Sbjct: 61 EHKLNGKVIDPKRAKAMKTK 80
Score = 40 (19.1 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 409 GTGGGSFPGYTSYMWY 424
G GG + GY +Y Y
Sbjct: 216 GYGGYDYTGYNNYYGY 231
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 224 (83.9 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 55/174 (31%), Positives = 89/174 (51%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F FGE
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGEFGE 109
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D T K RGF +K + +K LE+ G + + K A+ K
Sbjct: 110 IEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEI-KVAQPK 162
Score = 127 (49.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D T K +GF FI FK K L
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVL- 142
Query: 167 NPQRKVNNRMAS-CQLASVGPTGPGVKEQGAAAQG 200
++K +N S C++ P ++Q ++ G
Sbjct: 143 --EKKFHNVSGSKCEIKVAQPKEVYQQQQFSSGGG 175
Score = 43 (20.2 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 399 YPNAPQSKSQGTGGGSFPGYTSYMWYG 425
Y N QG GG Y+ Y +YG
Sbjct: 207 YGNQGYGYQQGYGGYGGYDYSGYGYYG 233
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 54/164 (32%), Positives = 89/164 (54%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Score = 137 (53.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 242 KKYHNVG--LSKCEI 254
Score = 124 (48.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 53/164 (32%), Positives = 89/164 (54%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 89 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 196
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 197 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 240 KKYHNVG--LSKCEI 252
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 24/97 (24%), Positives = 48/97 (49%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FG++ + D TG+SRGF
Sbjct: 80 SSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFG 139
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 140 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 176
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 51/155 (32%), Positives = 84/155 (54%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE
Sbjct: 62 KEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGE 111
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+E+ + D T K RGF +K E +K +E+
Sbjct: 112 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 146
Score = 137 (53.3 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 86 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 145
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 146 KKYHNVG--LSKCEI 158
Score = 113 (44.8 bits), Expect = 0.00023, P = 0.00023
Identities = 21/81 (25%), Positives = 42/81 (51%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K+++ + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K +++
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
+ G + ++A K +
Sbjct: 62 KEHKLNGKVIDPKRAKAMKTK 82
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 219 (82.2 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 53/167 (31%), Positives = 85/167 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F FGE
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGEFGE 109
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274
IE + D + K RGF +K E +K LE+ G + +C
Sbjct: 110 IEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSK-RC 155
Score = 122 (48.0 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + D K+ L+ +F +FGE+ I D TG+SRGF ++K K L++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 263 PQKMFEGHQLQCQKA 277
+ +G + +KA
Sbjct: 61 KEHRLDGRVIDPKKA 75
Score = 117 (46.2 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D + K +GF FI FK + K L+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Score = 39 (18.8 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 407 SQGTGGGSFPGYTSYMW 423
++G+GGG G S W
Sbjct: 184 NRGSGGGGGSGSQSQSW 200
Score = 38 (18.4 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 334 FGQHPGMHPLYGGFLVNP 351
+G G P YGG+ +P
Sbjct: 212 YGYQQGYGPGYGGYDYSP 229
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 226 (84.6 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 53/174 (30%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK ++ K L++
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +K KI+V + + ++++R +FE FGE
Sbjct: 125 KEHRLDGRLIDPKKAMAMKKDP-IK----------KIFVGGLNPEAGEDQIREYFETFGE 173
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D T K RGF +K + +K LE+ G + + K A+ K
Sbjct: 174 IEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKCEI-KIAQPK 226
Score = 39 (18.8 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 408 QGTGG-GSFPGYTSYMWYG 425
QG GG G++ Y+ Y +YG
Sbjct: 277 QGYGGYGNYD-YSGYGYYG 294
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 55/174 (31%), Positives = 89/174 (51%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F FGE
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGEFGE 109
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D T K RGF +K + +K LE+ G + + K A+ K
Sbjct: 110 IEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEI-KVAQPK 162
Score = 127 (49.8 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D T K +GF FI FK K L
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVL- 142
Query: 167 NPQRKVNNRMAS-CQLASVGPTGPGVKEQGAAAQG 200
++K +N S C++ P ++Q ++ G
Sbjct: 143 --EKKFHNVSGSKCEIKVAQPKEVYQQQQFSSGGG 175
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 55/174 (31%), Positives = 88/174 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D + K RGF +K E +K LE+ G + + K A+ K
Sbjct: 180 IEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEI-KVAQPK 232
Score = 129 (50.5 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D + K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQ-GAAAQGER 202
++ + C++ P ++Q G+ +G R
Sbjct: 214 KKFHTISG--SKCEIKVAQPKEVYQQQQYGSGGRGNR 248
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 218 (81.8 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 49/155 (31%), Positives = 83/155 (53%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + + L+
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A +K++ +KI+V + + +EK+R +F FGE
Sbjct: 106 KEHRLDGRQIDPKRAMA------IKKEPV-----KKIFVGGLNPETTEEKIREYFGSFGE 154
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
IET + D T K RGF +K +K LE+
Sbjct: 155 IETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189
Score = 134 (52.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 36/95 (37%), Positives = 49/95 (51%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT+E + FG GEIE +L D T K +GF FI FK A K L
Sbjct: 129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKIL- 187
Query: 167 NPQRKVNNRMAS-CQLASVGPTGPGVKEQGAAAQG 200
++K +N S C++ P ++Q A G
Sbjct: 188 --EKKYHNVCGSKCEIKIAQPKEIYQQQQFGARGG 220
Score = 128 (50.1 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 28/98 (28%), Positives = 51/98 (52%)
Query: 183 SVGPTGPGVKEQGAAAQGER---KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239
+ G G G Q A++ E K++V + D K+ L+ +F +FGE+ I D T
Sbjct: 23 AAGENGAGEGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNT 82
Query: 240 GKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G+SRGF ++K + + L++ + +G Q+ ++A
Sbjct: 83 GRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRA 120
Score = 40 (19.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 408 QGTGGGSFPGYTSYMWYG 425
QG G G GY Y YG
Sbjct: 251 QGYGYGGQQGYGGYGGYG 268
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 56/174 (32%), Positives = 87/174 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + + TG++KGF FI+FK + K L
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F FGE
Sbjct: 125 KEHRLDGRVIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGEFGE 173
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D T K RGF +K E +K LE+ G + + K A+ K
Sbjct: 174 IEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEI-KVAQPK 226
Score = 133 (51.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D T K +GF FI FK + K L+
Sbjct: 148 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQ-GAAAQGER 202
++ + C++ P ++Q G+ +G R
Sbjct: 208 KKFHTISG--SKCEIKVAQPKEVYQQQQYGSGGRGNR 242
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 55/174 (31%), Positives = 87/174 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D K RGF +K E +K LE+ G + + K A+ K
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEI-KVAQPK 232
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQ-GAAAQGER 202
V+ + C++ P ++Q G+ +G R
Sbjct: 214 KKFHTVSG--SKCEIKVAQPKEVYQQQQYGSGGRGNR 248
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 55/174 (31%), Positives = 87/174 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D K RGF +K E +K LE+ G + + K A+ K
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEI-KVAQPK 232
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQ-GAAAQGER 202
V+ + C++ P ++Q G+ +G R
Sbjct: 214 KKFHTVSG--SKCEIKVAQPKEVYQQQQYGSGGRGNR 248
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 219 (82.2 bits), Expect = 4.7e-18, P = 4.7e-18
Identities = 54/174 (31%), Positives = 88/174 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F +FGE
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGQFGE 184
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D K RGF +K + +K LE+ G + + K A+ K
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEI-KVAQPK 237
Score = 129 (50.5 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQ-GAAAQGER 202
V+ + C++ P ++Q G+ +G R
Sbjct: 219 KKFHTVSG--SKCEIKVAQPKEVYQQQQYGSGGRGNR 253
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 219 (82.2 bits), Expect = 4.7e-18, P = 4.7e-18
Identities = 54/174 (31%), Positives = 88/174 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F +FGE
Sbjct: 149 KEHRLDGRVIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGQFGE 197
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D K RGF +K + +K LE+ G + + K A+ K
Sbjct: 198 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEI-KVAQPK 250
Score = 129 (50.5 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 172 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQ-GAAAQGER 202
V+ + C++ P ++Q G+ +G R
Sbjct: 232 KKFHTVSG--SKCEIKVAQPKEVYQQQQYGSGGRGNR 266
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 219 (82.2 bits), Expect = 4.7e-18, P = 4.7e-18
Identities = 54/174 (31%), Positives = 88/174 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F +FGE
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGQFGE 184
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D K RGF +K + +K LE+ G + + K A+ K
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEI-KVAQPK 237
Score = 129 (50.5 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQ-GAAAQGER 202
V+ + C++ P ++Q G+ +G R
Sbjct: 219 KKFHTVSG--SKCEIKVAQPKEVYQQQQYGSGGRGNR 253
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 220 (82.5 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 55/174 (31%), Positives = 87/174 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D K RGF +K E +K LE+ G + + K A+ K
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEI-KVAQPK 232
Score = 128 (50.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQ-GAAAQGER 202
V+ + C++ P ++Q G+ +G R
Sbjct: 214 KKFHTVSG--SKCEIKVAQPKEVYQQQQYGSGGRGNR 248
Score = 38 (18.4 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 334 FGQHPGMHPLYGGFLVNP 351
+G G P YGG+ +P
Sbjct: 275 YGYQQGYGPGYGGYDYSP 292
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 219 (82.2 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 54/174 (31%), Positives = 88/174 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F +FGE
Sbjct: 135 KEHRLDGRVIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGQFGE 183
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D K RGF +K + +K LE+ G + + K A+ K
Sbjct: 184 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEI-KVAQPK 236
Score = 129 (50.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 158 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQ-GAAAQGER 202
V+ + C++ P ++Q G+ +G R
Sbjct: 218 KKFHTVSG--SKCEIKVAQPKEVYQQQQYGSGGRGNR 252
Score = 38 (18.4 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 334 FGQHPGMHPLYGGFLVNP 351
+G G P YGG+ +P
Sbjct: 279 YGYQQGYGPGYGGYDYSP 296
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 219 (82.2 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 54/174 (31%), Positives = 88/174 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P VK KI+V + + +EK+R +F +FGE
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP-VK----------KIFVGGLNPEATEEKIREYFGQFGE 184
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE + D K RGF +K + +K LE+ G + + K A+ K
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEI-KVAQPK 237
Score = 129 (50.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQ-GAAAQGER 202
V+ + C++ P ++Q G+ +G R
Sbjct: 219 KKFHTVSG--SKCEIKVAQPKEVYQQQQYGSGGRGNR 253
Score = 38 (18.4 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 334 FGQHPGMHPLYGGFLVNP 351
+G G P YGG+ +P
Sbjct: 280 YGYQQGYGPGYGGYDYSP 297
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 218 (81.8 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 56/175 (32%), Positives = 87/175 (49%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNV-PRDVEKEKLRGFFERFG 226
+ +++ R+ + A P VK KI+V + P +EK+R +F FG
Sbjct: 130 KEHRLDGRVIDPKKAMAMKKDP-VK----------KIFVGGLNPESPTEEKIREYFGEFG 178
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
EIE + D K RGF +K E +K LE+ G + + K A+ K
Sbjct: 179 EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEI-KVAQPK 232
Score = 120 (47.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 32/98 (32%), Positives = 50/98 (51%)
Query: 107 RKIFVHGLGWDT-TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+KIFV GL ++ T+E + FG GEIE +L +D K +GF FI FK + K L
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQ-GAAAQGER 202
+ V+ + C++ P ++Q G+ +G R
Sbjct: 213 EKKFHTVSG--SKCEIKVAQPKEVYQQQQYGSGGRGNR 248
Score = 38 (18.4 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 334 FGQHPGMHPLYGGFLVNP 351
+G G P YGG+ +P
Sbjct: 280 YGYQQGYGPGYGGYDYSP 297
Score = 37 (18.1 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 407 SQGTGGGSFPGYTSYMW 423
++G+GGG G S W
Sbjct: 252 NRGSGGGGGGGGQSQSW 268
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 212 (79.7 bits), Expect = 3.3e-17, P = 3.3e-17
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 92
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 93 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 148
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 149 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 199
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 212 (79.7 bits), Expect = 3.3e-17, P = 3.3e-17
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 211 (79.3 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 47/170 (27%), Positives = 84/170 (49%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A P + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 128 (50.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
Score = 48 (22.0 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 27/88 (30%), Positives = 35/88 (39%)
Query: 334 FGQ-HPGMHPLYGGFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFGPXXXXXX 392
+G+ +PG P YG PG P A G + A+ V A GS VL S+
Sbjct: 226 YGRGYPGFAPSYGYQF--PGF--PAAA----YGPVAAAAVAAARGS-VLNSYSAQPNFGA 276
Query: 393 XXXXHVYPNAPQSKSQGTGGGSFPGYTS 420
P +P + GG FPG S
Sbjct: 277 -------PASPAGSNPARPGG-FPGANS 296
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 205 (77.2 bits), Expect = 5.6e-17, Sum P(2) = 5.6e-17
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 9 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 68
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G
Sbjct: 69 ARPHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLREYFEKYG 124
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 125 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 175
Score = 40 (19.1 bits), Expect = 5.6e-17, Sum P(2) = 5.6e-17
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 411 GGGSFPGYTSYMWYG 425
GGGSF G +S YG
Sbjct: 273 GGGSFGGRSSGSPYG 287
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 210 (79.0 bits), Expect = 5.7e-17, P = 5.7e-17
Identities = 47/143 (32%), Positives = 78/143 (54%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGK 241
R +F FGE+E+ + D T K
Sbjct: 199 REYFGGFGEVESIELPMDNKTNK 221
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 219 (82.2 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 49/170 (28%), Positives = 84/170 (49%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TT E+L FG GE+ EC ++ D T +A+GF FI F + K L N
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ + ++A P + Q +K+++ + E ++ +FE +G+
Sbjct: 106 REHELDGKKIDPKVAF--PK----RTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGK 159
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD T + RGF + + E A K E G ++C+KA
Sbjct: 160 VEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKA 209
Score = 123 (48.4 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 27/99 (27%), Positives = 49/99 (49%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+F+ GL +T E + F G++E+ L+ DK T + +GF F+ F + + A K +
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCE 193
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIY 205
++N +M C+ A V+ + A R +Y
Sbjct: 194 IHFHEINGKMVECKKAQPKEVMLPVQLNKSRAAAARNLY 232
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 206 (77.6 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 46/169 (27%), Positives = 83/169 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+++++ ++A P + Q +KI+V + + E ++ +FE+FG++
Sbjct: 61 HHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 114
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 115 EDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 163
Score = 128 (50.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 148 IHFHEINNKMVECKKA 163
Score = 48 (22.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 27/88 (30%), Positives = 35/88 (39%)
Query: 334 FGQ-HPGMHPLYGGFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFGPXXXXXX 392
+G+ +PG P YG PG P A G + A+ V A GS VL S+
Sbjct: 204 YGRGYPGFAPSYGYQF--PGF--PAAA----YGPVAAAAVAAARGS-VLNSYSAQPNFGA 254
Query: 393 XXXXHVYPNAPQSKSQGTGGGSFPGYTS 420
P +P + GG FPG S
Sbjct: 255 -------PASPAGSNPARPGG-FPGANS 274
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 222 (83.2 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 54/174 (31%), Positives = 86/174 (49%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK K L
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + P K + +KI+V + + +E++R +F FGE
Sbjct: 156 KEHRLDGRQ-------IDPK----KAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGE 204
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IET + D + K RGF +K E +K LE K + H + K GK
Sbjct: 205 IETIELPMDPKSNKRRGFVFITFKEEEAVKKILE---KKY--HNVSGTKDTSGK 253
Score = 130 (50.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT+E + FG GEIE +L +D + K +GF FI FK +A K L+
Sbjct: 179 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 238
Query: 167 NPQRKVN 173
V+
Sbjct: 239 KKYHNVS 245
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 214 (80.4 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 51/182 (28%), Positives = 93/182 (51%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
+ A+ ++ R+ + A V G + GA +K++V + D E+
Sbjct: 70 SSMAEVDAAMAARPHSIDGRVVEPKRA-VAREESG--KPGAHVT-VKKLFVGGIKEDTEE 125
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
LR +FE +G+++T I D +GK RGF F + + K + + GH + +
Sbjct: 126 HHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVR 185
Query: 276 KA 277
KA
Sbjct: 186 KA 187
Score = 39 (18.8 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 409 GTGGGSFPGYTSY 421
G GGG+F G Y
Sbjct: 250 GLGGGNFGGIPGY 262
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 218 (81.8 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A P + Q +KI+V + + E ++ +FE+FG+
Sbjct: 61 SRHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 114
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 115 VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 164
Score = 134 (52.2 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 148
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 149 IHFHEINNKMVECKKAQPKEVMSPTG 174
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 216 (81.1 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 52/171 (30%), Positives = 88/171 (51%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 TTPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + +GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 222 (83.2 bits), Expect = 3.4e-16, P = 3.4e-16
Identities = 52/184 (28%), Positives = 91/184 (49%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
D+ ET+ + K+F+ GL W+TT +SL F GE+ +C ++ D TG+++GF F+
Sbjct: 150 DNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFL 209
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
FK K V + + + ++ ++ + A P +EQ A K++V VP D
Sbjct: 210 TFKNPKC-VNEVMSKEHHLDGKIIDPKRAI--PR----EEQEKTA----KMFVGGVPGDC 258
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
+E+ R FF +FG + + D TG+ RGF Y+ + +P G ++
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVE 318
Query: 274 CQKA 277
++A
Sbjct: 319 VKRA 322
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 203 (76.5 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 51/171 (29%), Positives = 85/171 (49%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KVN R+ + A V ++ A +KI+V + D E+ LR +F ++G
Sbjct: 67 ARPHKVNGRVVEPKRA-VSRED---SQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYG 122
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ E I D +GK RGFA + + K + + GH + +KA
Sbjct: 123 KTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKA 173
Score = 117 (46.2 bits), Expect = 0.00012, P = 0.00012
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA 160
D ++ +KIFV G+ DT + L FG G+ E ++V D+ +GK +GFAF+ F R +
Sbjct: 92 DAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDS 151
Query: 161 AVKALKNPQRKVNNRMASCQL 181
K + VN +C++
Sbjct: 152 VDKIVIQKYHTVNGH--NCEV 170
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 203 (76.5 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 50/171 (29%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+ + GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 8 RKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVC 67
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G
Sbjct: 68 ARPHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLRDYFEKYG 123
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K +++ + GH + +KA
Sbjct: 124 KIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCEVKKA 174
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 218 (81.8 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A P + Q +KI+V + + E ++ +FE+FG+
Sbjct: 81 SRHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
Score = 134 (52.2 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 218 (81.8 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A P + Q +KI+V + + E ++ +FE+FG+
Sbjct: 81 SRHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
Score = 133 (51.9 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 218 (81.8 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A P + Q +KI+V + + E ++ +FE+FG+
Sbjct: 81 SRHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
Score = 133 (51.9 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 218 (81.8 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 47/170 (27%), Positives = 88/170 (51%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A P + Q +KI+V + + E ++ +FE+FG+
Sbjct: 81 SRHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
Score = 133 (51.9 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 212 (79.7 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 45/154 (29%), Positives = 81/154 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ ++ + A +K + + +K++V + D +E+++ +F FGE
Sbjct: 91 KEHKLDGKLIDPKRAKA------LKGK----EPPKKVFVGGLSPDTSEEQIKEYFGAFGE 140
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T + RGF Y E +K LE
Sbjct: 141 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Score = 121 (47.7 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL DT++E + FG GEIE +L +D T + +GF FI + + K L+
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Query: 167 NPQRKVNNRMASCQLASVGP 186
+ ++ + C++ P
Sbjct: 175 SRYHQIGS--GKCEIKVAQP 192
Score = 113 (44.8 bits), Expect = 0.00061, P = 0.00061
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 27 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 86
Query: 259 ALEEPQKMFEGHQLQCQ--KAAEGK 281
LE + +G + + KA +GK
Sbjct: 87 VLELKEHKLDGKLIDPKRAKALKGK 111
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 215 (80.7 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 47/165 (28%), Positives = 85/165 (51%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L+ + S K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK
Sbjct: 41 LDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFK 100
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L+ + K++ ++ + A +K + + +K++V + D +E
Sbjct: 101 DAASVDKVLELKEHKLDGKLIDPKRAKA------LKGK----EPPKKVFVGGLSPDTSEE 150
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
+++ +F FGEIE + D T + RGF Y E +K LE
Sbjct: 151 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Score = 121 (47.7 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL DT++E + FG GEIE +L +D T + +GF FI + + K L+
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 167 NPQRKVNNRMASCQLASVGP 186
+ ++ + C++ P
Sbjct: 196 SRYHQIGS--GKCEIKVAQP 213
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 215 (80.7 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 47/165 (28%), Positives = 85/165 (51%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L+ + S K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK
Sbjct: 41 LDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFK 100
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L+ + K++ ++ + A +K + + +K++V + D +E
Sbjct: 101 DAASVDKVLELKEHKLDGKLIDPKRAKA------LKGK----EPPKKVFVGGLSPDTSEE 150
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
+++ +F FGEIE + D T + RGF Y E +K LE
Sbjct: 151 QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Score = 121 (47.7 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL DT++E + FG GEIE +L +D T + +GF FI + + K L+
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 167 NPQRKVNNRMASCQLASVGP 186
+ ++ + C++ P
Sbjct: 196 SRYHQIGS--GKCEIKVAQP 213
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 212 (79.7 bits), Expect = 5.2e-16, P = 5.2e-16
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 205 (77.2 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 21 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 80
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G
Sbjct: 81 ARPHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLREYFEKYG 136
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 137 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 187
Score = 40 (19.1 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 411 GGGSFPGYTSYMWYG 425
GGGSF G +S YG
Sbjct: 279 GGGSFGGRSSGSPYG 293
Score = 39 (18.8 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 409 GTGGGSFPGY 418
G GGG PGY
Sbjct: 217 GGGGGGGPGY 226
Score = 37 (18.1 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 409 GTGGGSFPGY 418
G GGG + GY
Sbjct: 234 GGGGGGYDGY 243
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 212 (79.7 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 211 (79.3 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 45/154 (29%), Positives = 81/154 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ ++ + A +K + + +K++V + D +E+++ +F FGE
Sbjct: 90 KEHKLDGKLIDPKRAKA------LKGK----EPPKKVFVGGLSPDTSEEQIKEYFGAFGE 139
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T + RGF Y E +K LE
Sbjct: 140 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Score = 121 (47.7 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL DT++E + FG GEIE +L +D T + +GF FI + + K L+
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 167 NPQRKVNNRMASCQLASVGP 186
+ ++ + C++ P
Sbjct: 174 SRYHQIGS--GKCEIKVAQP 191
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 212 (79.7 bits), Expect = 6.2e-16, P = 6.2e-16
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 197 (74.4 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 50/176 (28%), Positives = 88/176 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV G+ + E L S F GE+ + ++ D+ G+++GFAF+ F T + AL
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
++ + G V+ + A ++ +K++V +P D ++ LR FE+FG
Sbjct: 89 AREQTIK--------------GKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFG 134
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA-EGK 281
+++ FD T R FA V++ E A KA + ++ F + +KA +GK
Sbjct: 135 KVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQGK 190
Score = 148 (57.2 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 30/101 (29%), Positives = 54/101 (53%)
Query: 185 GPTGPGVKEQGAAAQG--ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKS 242
G +KE G + +G ++KI+V + +V E L F ++GE+ + +D T G+S
Sbjct: 10 GNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRS 69
Query: 243 RGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
RGFA + T EG + AL ++ +G ++ + A +N+
Sbjct: 70 RGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRENK 110
Score = 50 (22.7 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 25/86 (29%), Positives = 33/86 (38%)
Query: 335 GQHPGMHPLYGGFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFGPXXXXXXXX 394
G+ PG +YGG N + AG GA+P GA G +G
Sbjct: 197 GRMPGGRGMYGGRGGNNN--SGWYAGWGQIGAMPYGATGAAWGDW----YGNGYYGQQGA 250
Query: 395 XXHVYPNAPQSKSQGTGGGSFPGYTS 420
H N+ S+ G+G SF G S
Sbjct: 251 AHH--NNSGSSQGYGSGYQSFAGNNS 274
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 194 (73.4 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
Identities = 45/171 (26%), Positives = 85/171 (49%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL +TT+ESL + + GE+ +C ++ + K++GF F+ F + A+
Sbjct: 21 RKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMA 80
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
++ R+ + A ++QG+ +K++V + D E+ LR +FE++G
Sbjct: 81 ARPHSIDGRVVDPKRAVSREKS---EKQGSLVN-VKKLFVGGIKEDTEEHHLREYFEKYG 136
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+I+ I D +GK RGF + + K + + GH+ + KA
Sbjct: 137 KIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGKA 187
Score = 100 (40.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
V+ +K+FV G+ DT + L F G+I+ +++ D+ +GK +GF F+ F K
Sbjct: 109 VNVKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDK 168
Query: 164 ALKNPQRKVNNRMA 177
+ +N A
Sbjct: 169 IMLQKYHAINGHRA 182
Score = 60 (26.2 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
Identities = 21/64 (32%), Positives = 25/64 (39%)
Query: 368 PASNVGAMAGSSVL----GSFGPXXXXXXXXXXHVYPNAPQSKSQ------GTGGGSFPG 417
P S G G SV G+FG Y N P+S+ G GGG+F G
Sbjct: 199 PRSRKGGPFGFSVSSNGGGNFGRGPGTKFRGEADGYGNGPESRDGCHGYGGGPGGGNFGG 258
Query: 418 YTSY 421
Y Y
Sbjct: 259 YPCY 262
Score = 41 (19.5 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 411 GGGSFPGYTSY 421
GGG+F GY Y
Sbjct: 263 GGGNFGGYPCY 273
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 203 (76.5 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G
Sbjct: 73 ARPHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLRDYFEKYG 128
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 129 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
Score = 43 (20.2 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 399 YPNAPQSKSQGTGGGSFPGY 418
Y P S+G GG PGY
Sbjct: 221 YGGGPGYSSRGGYGGGGPGY 240
Score = 40 (19.1 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 409 GTGG--GSFPGYTSYMWYG 425
G GG G PGY+S YG
Sbjct: 216 GRGGNYGGGPGYSSRGGYG 234
Score = 38 (18.4 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 399 YPNAPQSKSQGTGGGSFPGYTSYMWYG 425
Y QS GGSF G +S YG
Sbjct: 279 YSGQQQSNYGPMKGGSFGGRSSGSPYG 305
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 212 (79.7 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 212 (79.7 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 212 (79.7 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 212 (79.7 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 212 (79.7 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 212 (79.7 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 212 (79.7 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 209 (78.6 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 51/182 (28%), Positives = 92/182 (50%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
+ A+ ++ R+ + A V G + GA +K++V + D E+
Sbjct: 70 SSMAEVDAAMAARPHSIDGRVVEPKRA-VAREESG--KPGAHVT-VKKLFVGGIKEDTEE 125
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
LR +FE +G+I+T I D +GK RGF + + K + + GH + +
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVR 185
Query: 276 KA 277
KA
Sbjct: 186 KA 187
Score = 38 (18.4 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 409 GTGGGSFPGYTSY 421
G GGG+F G Y
Sbjct: 250 GPGGGNFGGSPGY 262
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 211 (79.3 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 54/182 (29%), Positives = 95/182 (52%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
L + +++ Q RK+F+ GL ++TT ESL S F G + +C +V+D T +++GF F+ +
Sbjct: 12 LNQSPKELEQLRKLFIGGLSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRSRGFGFVTY 70
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
T + A+ +K++ R+ + A + + GA +KI+V + D E+
Sbjct: 71 TTVEEVDAAMNARPQKMDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEE 126
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
LR +FE++G+IE I D +GK RGFA + + K + + GH + +
Sbjct: 127 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTGNGHNCEVR 186
Query: 276 KA 277
KA
Sbjct: 187 KA 188
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 212 (79.7 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 198 (74.8 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 50/171 (29%), Positives = 84/171 (49%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCA 72
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
P KV+ R+ + A VK GA +KI+V + D + LR +FE++G
Sbjct: 73 RPH-KVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTGEYNLRDYFEKYG 127
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 128 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 178
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 198 (74.8 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 51/172 (29%), Positives = 85/172 (49%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 10 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 69
Query: 167 NPQRKVNNRMASCQLA-SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
KV+ R+ + A S+ + Q A KI+V + D E+ LR +F ++
Sbjct: 70 ARPHKVDGRVVEPKRAVSIEDS------QRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQY 123
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G+ E I D +GK RGFA + + K + + GH + +KA
Sbjct: 124 GKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKA 175
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 198 (74.8 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 49/170 (28%), Positives = 85/170 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL ++TT ESL S F G + +C ++ D T + +GF F+ + T + A+
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
KV+ R+ + A + + GA +KI+V ++ D E+ LR +FE++G+
Sbjct: 68 RPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGSIKEDTEEHHLREYFEQYGK 123
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE I D +G+ RGF + + K + + GH + +KA
Sbjct: 124 IEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 173
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 212 (79.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 45/154 (29%), Positives = 81/154 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ ++ + A +K + + +K++V + D +E+++ +F FGE
Sbjct: 127 KEHKLDGKLIDPKRAKA------LKGK----EPPKKVFVGGLSPDTSEEQIKEYFGAFGE 176
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T + RGF Y E +K LE
Sbjct: 177 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 210
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL DT++E + FG GEIE +L +D T + +GF FI + + K L+
Sbjct: 151 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 210
Query: 167 NPQRKVNNRMASCQLASVGP 186
+ ++ + C++ P
Sbjct: 211 SRYHQIGS--GKCEIKVAQP 228
Score = 113 (44.8 bits), Expect = 0.00076, P = 0.00076
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 63 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 122
Query: 259 ALEEPQKMFEGHQLQCQ--KAAEGK 281
LE + +G + + KA +GK
Sbjct: 123 VLELKEHKLDGKLIDPKRAKALKGK 147
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 208 (78.3 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 51/182 (28%), Positives = 92/182 (50%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 9 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 68
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
+ A+ ++ R+ + A V G + GA +K++V + D E+
Sbjct: 69 SSMAEVDAAMAARPHSIDGRVVEPKRA-VAREESG--KPGAHVT-VKKLFVGGIKEDTEE 124
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
LR +FE +G+I+T I D +GK RGF + + K + + GH + +
Sbjct: 125 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 184
Query: 276 KA 277
KA
Sbjct: 185 KA 186
Score = 38 (18.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 409 GTGGGSFPGYTSY 421
G GGG+F G Y
Sbjct: 249 GPGGGNFGGSPGY 261
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 211 (79.3 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 47/170 (27%), Positives = 84/170 (49%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A P + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 208 (78.3 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 51/182 (28%), Positives = 92/182 (50%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
+ A+ ++ R+ + A V G + GA +K++V + D E+
Sbjct: 70 SSMAEVDAAMAARPHSIDGRVVEPKRA-VAREESG--KPGAHVT-VKKLFVGGIKEDTEE 125
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
LR +FE +G+I+T I D +GK RGF + + K + + GH + +
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 185
Query: 276 KA 277
KA
Sbjct: 186 KA 187
Score = 38 (18.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 409 GTGGGSFPGYTSY 421
G GGG+F G Y
Sbjct: 250 GPGGGNFGGSPGY 262
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 208 (78.3 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 51/182 (28%), Positives = 92/182 (50%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
+ A+ ++ R+ + A V G + GA +K++V + D E+
Sbjct: 70 SSMAEVDAAMAARPHSIDGRVVEPKRA-VAREESG--KPGAHVT-VKKLFVGGIKEDTEE 125
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
LR +FE +G+I+T I D +GK RGF + + K + + GH + +
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 185
Query: 276 KA 277
KA
Sbjct: 186 KA 187
Score = 38 (18.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 409 GTGGGSFPGYTSY 421
G GGG+F G Y
Sbjct: 250 GPGGGNFGGSPGY 262
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 208 (78.3 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 51/182 (28%), Positives = 92/182 (50%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
+ A+ ++ R+ + A V G + GA +K++V + D E+
Sbjct: 70 SSMAEVDAAMAARPHSIDGRVVEPKRA-VAREESG--KPGAHVT-VKKLFVGGIKEDTEE 125
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
LR +FE +G+I+T I D +GK RGF + + K + + GH + +
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 185
Query: 276 KA 277
KA
Sbjct: 186 KA 187
Score = 38 (18.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 409 GTGGGSFPGYTSY 421
G GGG+F G Y
Sbjct: 250 GPGGGNFGGSPGY 262
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 210 (79.0 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 52/171 (30%), Positives = 86/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 213 (80.0 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 56/181 (30%), Positives = 95/181 (52%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
S K+FV G+ W+TT E+ + FG GE+ + ++ D++TG +GF F+ F A K
Sbjct: 64 SPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKV 123
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
L+ +++R L P G + A ++ RKI+V +P +E+++L+ +F
Sbjct: 124 LEE-DHVIDDRKVD--LKRTLPRGDKDTDIKAVSK-TRKIFVGGLPPLLEEDELKNYFCV 179
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ-KAAEGKNR 283
+G+I I +D TG+SRGF ++T + + + K+ E Q + K AE K R
Sbjct: 180 YGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG-KVHELGDKQVEIKRAEPK-R 237
Query: 284 T 284
T
Sbjct: 238 T 238
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 207 (77.9 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 51/182 (28%), Positives = 91/182 (50%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
+ A+ ++ R+ + A V G + GA +K++V + D E+
Sbjct: 70 SSMAEVDAAMAARPHSIDGRVVEPKRA-VAREESG--KPGAHVT-VKKLFVGGIKEDTEE 125
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
LR +FE +G+I+T I D +GK RGF + + K + GH + +
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVR 185
Query: 276 KA 277
KA
Sbjct: 186 KA 187
Score = 38 (18.4 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 409 GTGGGSFPGYTSY 421
G GGG+F G Y
Sbjct: 250 GPGGGNFGGSPGY 262
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 196 (74.1 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 46/185 (24%), Positives = 88/185 (47%)
Query: 93 HDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAF 152
H + + RK+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F
Sbjct: 41 HSSVSARKAAQAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGF 100
Query: 153 IVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRD 212
+ FK L + ++ R ++ P G + + + KI+V +P +
Sbjct: 101 VKFKDPNCVGTVLASRPHTLDGR-------NIDPKQKGPRSDNSKSN---KIFVGGIPHN 150
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
+ +LR +F++FG + + +D + RGF ++ + +A+ G ++
Sbjct: 151 CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKV 210
Query: 273 QCQKA 277
+ ++A
Sbjct: 211 EVKRA 215
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 186 (70.5 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 45/174 (25%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
+++V + ++ ++++ AF G I+ + D VT K KGFAF+ ++ +AA AL+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 167 -NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
N + + +++G P + + A+ +IYV++V +D+ + ++ FE F
Sbjct: 147 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 206
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE--GHQLQCQKA 277
G+I++ + D TTGK +G+ Y+ + ++ A+ +F+ G L+ KA
Sbjct: 207 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 259
Score = 66 (28.3 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 346 GFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLGSF 384
G L PGL++P + A GA+P + + A A + G+F
Sbjct: 303 GTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITGAF 341
Score = 47 (21.6 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 22/81 (27%), Positives = 32/81 (39%)
Query: 351 PGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFG-PXXXXXXXXXXHVYPNAPQS--KS 407
PG + P A A + A+AG++VLG+ P PQ+ +
Sbjct: 272 PGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLATPGLVSPALTLAQPLGALPQAVMAA 331
Query: 408 QGTG--GGSFPGY--TSYMWY 424
Q G G+FP + T Y Y
Sbjct: 332 QAPGVITGAFPAHCVTCYNCY 352
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 212 (79.7 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 212 (79.7 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 212 (79.7 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 203 (76.5 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G
Sbjct: 95 ARPHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLRDYFEKYG 150
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 151 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Score = 38 (18.4 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 399 YPNAPQSKSQGTGGGSFPGYTSYMWYG 425
Y QS GGSF G +S YG
Sbjct: 277 YSGQQQSNYGPMKGGSFGGRSSGSPYG 303
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 203 (76.5 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G
Sbjct: 73 ARPHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLRDYFEKYG 128
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 129 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
Score = 43 (20.2 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 16/48 (33%), Positives = 19/48 (39%)
Query: 371 NVGAMAGSSVLGSFGPXXXXXXXXXXHVYPNAPQSKSQGTGGGSFPGY 418
N G +GSS G +G Y N Q G GGG + GY
Sbjct: 254 NYGGGSGSSSRGGYGGGGPG--------YGN--QGGGYGGGGGGYDGY 291
Score = 38 (18.4 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 399 YPNAPQSKSQGTGGGSFPGYTSYMWYG 425
Y QS GGSF G +S YG
Sbjct: 314 YSGQQQSNYGPMKGGSFGGRSSGSPYG 340
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 208 (78.3 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 51/182 (28%), Positives = 92/182 (50%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 9 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 68
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
+ A+ ++ R+ + A V G + GA +K++V + D E+
Sbjct: 69 SSMAEVDAAMAARPHSIDGRVVEPKRA-VAREESG--KPGAHVT-VKKLFVGGIKEDTEE 124
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
LR +FE +G+I+T I D +GK RGF + + K + + GH + +
Sbjct: 125 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 184
Query: 276 KA 277
KA
Sbjct: 185 KA 186
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 213 (80.0 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 47/170 (27%), Positives = 84/170 (49%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A P + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 128 (50.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 212 (79.7 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 35 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 94
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA +KI+V + D E+ LR +FE++G
Sbjct: 95 ARPHKVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYG 150
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 151 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 201
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 205 (77.2 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 92
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G
Sbjct: 93 ARPHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLREYFEKYG 148
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 149 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 199
Score = 42 (19.8 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 28/95 (29%), Positives = 32/95 (33%)
Query: 334 FGQHPGMHPL--YGGFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFGPXXXXX 391
+G PG YGG PG NP G N G G G++G
Sbjct: 276 YGGGPGYGSRGGYGGG-GGPGYGNPGGGYGGGGGGYDGYNEGGNFGG---GNYGGSGNYN 331
Query: 392 XXXXXHVYPNAPQSK-SQGTGGGSFPGYTSYMWYG 425
Y QS GGGSF G +S YG
Sbjct: 332 DFGN---YSGQQQSNYGPMKGGGSFGGRSSGSPYG 363
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 194 (73.4 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 40/122 (32%), Positives = 68/122 (55%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE+
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGEV 110
Query: 229 ET 230
E+
Sbjct: 111 ES 112
Score = 108 (43.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 20/80 (25%), Positives = 41/80 (51%)
Query: 204 IYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263
+++ + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K +++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 264 QKMFEGHQLQCQKAAEGKNR 283
+ G + ++A K +
Sbjct: 61 EHKLNGKVIDPKRAKAMKTK 80
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 210 (79.0 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 46/170 (27%), Positives = 87/170 (51%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A P + Q +KI+V + + E ++ +FE+F +
Sbjct: 81 SRHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
Score = 126 (49.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F ++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 203 (76.5 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G
Sbjct: 95 ARPHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLRDYFEKYG 150
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 151 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Score = 43 (20.2 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 399 YPNAPQSKSQGTGGGSFPGY 418
Y P S+G GG PGY
Sbjct: 276 YGGGPGYSSRGGYGGGGPGY 295
Score = 40 (19.1 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 409 GTGG--GSFPGYTSYMWYG 425
G GG G PGY+S YG
Sbjct: 271 GDGGNYGGGPGYSSRGGYG 289
Score = 39 (18.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 404 QSKSQGTGGGSFPGY 418
Q G GGG + GY
Sbjct: 298 QGGGYGGGGGGYDGY 312
Score = 38 (18.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 399 YPNAPQSKSQGTGGGSFPGYTSYMWYG 425
Y QS GGSF G +S YG
Sbjct: 335 YSGQQQSNYGPMKGGSFGGRSSGSPYG 361
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 203 (76.5 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G
Sbjct: 95 ARPHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLRDYFEKYG 150
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 151 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Score = 43 (20.2 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 399 YPNAPQSKSQGTGGGSFPGY 418
Y P S+G GG PGY
Sbjct: 277 YGGGPGYSSRGGYGGGGPGY 296
Score = 40 (19.1 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 409 GTGG--GSFPGYTSYMWYG 425
G GG G PGY+S YG
Sbjct: 272 GDGGNYGGGPGYSSRGGYG 290
Score = 38 (18.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 399 YPNAPQSKSQGTGGGSFPGYTSYMWYG 425
Y QS GGSF G +S YG
Sbjct: 335 YSGQQQSNYGPMKGGSFGGRSSGSPYG 361
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 204 (76.9 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 49/178 (27%), Positives = 91/178 (51%)
Query: 101 DRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
+R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F +
Sbjct: 2 EREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 61
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A+ ++ R+ + A V G + GA +K++V + D E+ LR
Sbjct: 62 EVDAAMAARPHSIDGRVVEPKRA-VAREESG--KPGAHVT-VKKLFVGGIKEDTEEHHLR 117
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FE +G+I+T I D +GK RGF + + K + + GH + +KA
Sbjct: 118 DYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Score = 38 (18.4 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 409 GTGGGSFPGYTSY 421
G GGG+F G Y
Sbjct: 238 GPGGGNFGGSPGY 250
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 203 (76.5 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G
Sbjct: 95 ARPHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLRDYFEKYG 150
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 151 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Score = 43 (20.2 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 399 YPNAPQSKSQGTGGGSFPGY 418
Y P S+G GG PGY
Sbjct: 277 YGGGPGYSSRGGYGGGGPGY 296
Score = 40 (19.1 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 409 GTGG--GSFPGYTSYMWYG 425
G GG G PGY+S YG
Sbjct: 272 GDGGNYGGGPGYSSRGGYG 290
Score = 39 (18.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 404 QSKSQGTGGGSFPGY 418
Q G GGG + GY
Sbjct: 299 QGGGYGGGGGGYDGY 313
Score = 38 (18.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 399 YPNAPQSKSQGTGGGSFPGYTSYMWYG 425
Y QS GGSF G +S YG
Sbjct: 336 YSGQQQSNYGPMKGGSFGGRSSGSPYG 362
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 203 (76.5 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G
Sbjct: 95 ARPHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLRDYFEKYG 150
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 151 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Score = 43 (20.2 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 399 YPNAPQSKSQGTGGGSFPGY 418
Y P S+G GG PGY
Sbjct: 277 YGGGPGYSSRGGYGGGGPGY 296
Score = 40 (19.1 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 409 GTGG--GSFPGYTSYMWYG 425
G GG G PGY+S YG
Sbjct: 272 GDGGNYGGGPGYSSRGGYG 290
Score = 39 (18.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 404 QSKSQGTGGGSFPGY 418
Q G GGG + GY
Sbjct: 299 QGGGYGGGGGGYDGY 313
Score = 38 (18.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 399 YPNAPQSKSQGTGGGSFPGYTSYMWYG 425
Y QS GGSF G +S YG
Sbjct: 336 YSGQQQSNYGPMKGGSFGGRSSGSPYG 362
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 211 (79.3 bits), Expect = 5.7e-15, P = 5.7e-15
Identities = 45/154 (29%), Positives = 81/154 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ ++ + A +K + + +K++V + D +E+++ +F FGE
Sbjct: 209 KEHKLDGKLIDPKRAKA------LKGK----EPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T + RGF Y E +K LE
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL DT++E + FG GEIE +L +D T + +GF FI + + K L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 167 NPQRKVNNRMASCQLASVGP 186
+ ++ + C++ P
Sbjct: 293 SRYHQIGS--GKCEIKVAQP 310
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 211 (79.3 bits), Expect = 5.7e-15, P = 5.7e-15
Identities = 45/154 (29%), Positives = 81/154 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ ++ + A +K + + +K++V + D +E+++ +F FGE
Sbjct: 209 KEHKLDGKLIDPKRAKA------LKGK----EPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T + RGF Y E +K LE
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL DT++E + FG GEIE +L +D T + +GF FI + + K L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 167 NPQRKVNNRMASCQLASVGP 186
+ ++ + C++ P
Sbjct: 293 SRYHQIGS--GKCEIKVAQP 310
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 211 (79.3 bits), Expect = 5.7e-15, P = 5.7e-15
Identities = 45/154 (29%), Positives = 81/154 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ ++ + A +K + + +K++V + D +E+++ +F FGE
Sbjct: 209 KEHKLDGKLIDPKRAKA------LKGK----EPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T + RGF Y E +K LE
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL DT++E + FG GEIE +L +D T + +GF FI + + K L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 167 NPQRKVNNRMASCQLASVGP 186
+ ++ + C++ P
Sbjct: 293 SRYHQIGS--GKCEIKVAQP 310
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 192 (72.6 bits), Expect = 7.0e-15, P = 7.0e-15
Identities = 50/166 (30%), Positives = 90/166 (54%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+++ + + S+ + V+ L + TQE L S FG GEIE CKLV DK+TG++ G+ F+ +
Sbjct: 29 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
K A KA+ N + + + +++ P+ +++ +YVS +P+ + ++
Sbjct: 89 DPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQK 139
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
+L F ++G I T I D TG SRG + K +E A +A++
Sbjct: 140 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE-AEEAIK 184
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 203 (76.5 bits), Expect = 7.5e-15, P = 7.5e-15
Identities = 43/154 (27%), Positives = 84/154 (54%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D +TG+++GF F++FK ++ + L+
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ ++ + A +K + + +K++V + D+ +E+LR +F +GE
Sbjct: 91 TEHKLDGKLIDPKRAKA------IKGK----EPPKKVFVGGLSPDITEEQLREYFGVYGE 140
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE+ + D T + RGF + E +K LE
Sbjct: 141 IESIELPTDTKTNERRGFCFVTFALEEPVQKLLE 174
Score = 123 (48.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL D T+E L FG GEIE +L D T + +GF F+ F + K L+
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLE 174
Query: 167 NPQRKVNNRMASCQLASVGP 186
N ++ + C++ P
Sbjct: 175 NRYHQIGS--GKCEIKVAQP 192
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 203 (76.5 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G
Sbjct: 95 ARPHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLRDYFEKYG 150
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 151 KIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Score = 40 (19.1 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 409 GTGG--GSFPGYTSYMWYG 425
G GG G PGY+S YG
Sbjct: 272 GDGGNYGGGPGYSSRGGYG 290
Score = 39 (18.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 404 QSKSQGTGGGSFPGY 418
Q G GGG + GY
Sbjct: 300 QGGGYGGGGGGYDGY 314
Score = 38 (18.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 399 YPNAPQSKSQGTGGGSFPGYTSYMWYG 425
Y QS GGSF G +S YG
Sbjct: 337 YSGQQQSNYGPMKGGSFGGRSSGSPYG 363
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 208 (78.3 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 48/170 (28%), Positives = 83/170 (48%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF FI F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A P + Q +KI+V + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSASTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVECKKA 185
Score = 126 (49.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 190 (71.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 51/170 (30%), Positives = 84/170 (49%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL + TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
KV+ R+ + A + + GA +KI+V D E+ LR +FE++G+
Sbjct: 68 RPHKVDGRVVEPKRAV---SREDSRRPGAHLT-VKKIFVGE---DTEEHHLRDYFEQYGK 120
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 121 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 170
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 201 (75.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 47/181 (25%), Positives = 89/181 (49%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L ++D K+F+ GL W TTQE L F GE++E ++ D VT +++GF F+ F
Sbjct: 10 LSSSDSPHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFV 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A P + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQTRHELDSKTIDPKVAF--PR----RAQPKLVTRTKKIFVGGLSVNTTIE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +F++FG+++ + FD TT + RGF ++ + K E ++C+K
Sbjct: 124 DVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
Score = 134 (52.2 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 109 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
Score = 38 (18.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 355 NPMVAGALHQGAIPASNVGAMAGSSVLGSFGP 386
NPM A A + S AG S GP
Sbjct: 271 NPMAAAAAAAAVVRGSTPSRSAGFLGTSSPGP 302
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 201 (75.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 49/177 (27%), Positives = 90/177 (50%)
Query: 102 RDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA 160
R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F +
Sbjct: 11 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 70
Query: 161 AVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
A+ ++ R+ + A V G + GA +K++V + D E+ LR
Sbjct: 71 VDAAMAARPHTIDGRVVEPKRA-VAREESG--KPGAHVT-VKKLFVGGIKEDTEEHHLRD 126
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FE +G+I+T I D +GK RGF + + K + + GH + +KA
Sbjct: 127 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 183
Score = 38 (18.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 409 GTGGGSFPGYTSY 421
G GGG+F G Y
Sbjct: 246 GPGGGNFGGSPGY 258
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 203 (76.5 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 52/178 (29%), Positives = 87/178 (48%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR++
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDAN--------LYISGLPRNM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK----RSEAEEAITSFNGHK 171
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 183 (69.5 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 44/171 (25%), Positives = 83/171 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL + TT+ESL + GE+ +C ++ D + +++G F+ F + A+
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
++ R+ + A + G Q A +K++V + D E+ LR +FE++G
Sbjct: 69 ARPHSIDGRVLEPRRA-IPREASG---QRGAHWTLKKLFVGGIKEDTEEHHLREYFEKYG 124
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+I+ I D +G+ RGF + + K + + GH + +KA
Sbjct: 125 KIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKA 175
Score = 58 (25.5 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 378 SSVLGSFGPXXXXXXXXXXHVYPNAPQSKSQ------GTGGGSFPGYTSY 421
SS G+FG Y N P+S+ G GGG+F GY Y
Sbjct: 201 SSWGGNFGRGPGTKFRGEADGYGNGPRSRDSCQGYGGGPGGGNFGGYPGY 250
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 203 (76.5 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 51/179 (28%), Positives = 89/179 (49%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
+ RD RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFIVF
Sbjct: 49 SGQRD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNT 107
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
+A K + +N++ V P ++ A G KI+V + ++ E++
Sbjct: 108 EAIDKVSAADEHIINSK-------KVDP------KKAKARHG--KIFVGGLTTEISDEEI 152
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ +F +FG I + FD + +GF + + + L+ P++ G ++ ++A
Sbjct: 153 KTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRA 211
Score = 125 (49.1 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 31/107 (28%), Positives = 51/107 (47%)
Query: 85 AATKIPLLHDHILETADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLV 139
A K+ +HI+ + D + K IFV GL + + E + + FG G I E ++
Sbjct: 109 AIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMP 168
Query: 140 IDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
DK + KGF FI F + + LK P++K+ + + A+ P
Sbjct: 169 FDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 201 (75.8 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 52/178 (29%), Positives = 86/178 (48%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDAN--------LYISGLPRSM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK----RSEAEEAITNFNGHK 171
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 201 (75.8 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 52/178 (29%), Positives = 86/178 (48%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDAN--------LYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK----RSEAEEAITSFNGHK 171
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 198 (74.8 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 50/172 (29%), Positives = 86/172 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK F+ GL WDTT+E+L+S F G I + ++ D TG+++GF F+ F+ K+ V AL
Sbjct: 162 RKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKS-VDALL 220
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ ++ ++ + A + ++ G KI+V + V +E+ FF +FG
Sbjct: 221 KDRHVLDGKLIDPKRA--------ISKEDQEKVG--KIFVGGIDPMVTEEEFDNFFSQFG 270
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+I + D TG+SRGF Y + K +G ++ ++AA
Sbjct: 271 KIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEVKRAA 322
Score = 46 (21.3 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 336 QHPGMHPLYG--GFL-VNPGLINPMVA 359
Q M+P YG GF +NPG +NP ++
Sbjct: 349 QQQAMYP-YGSYGFQQMNPGAMNPAMS 374
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 201 (75.8 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 52/178 (29%), Positives = 86/178 (48%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 15 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 74
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 75 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDAN--------LYISGLPRTM 125
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 126 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK----RSEAEEAITSFNGHK 179
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 182 (69.1 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 52/175 (29%), Positives = 82/175 (46%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + EC ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ V P +E + KI+V + D E+ LR + E++G
Sbjct: 74 ARPHKVDGRV-------VEPERAVSREDSHSLTV--KIFVGGIKEDTEEHYLRDYSEQYG 124
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
+IE I D +GK RGFA + + K + H C + A K
Sbjct: 125 KIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIRKYHTVNDHN--CVRKALSK 177
Score = 42 (19.8 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 17/49 (34%), Positives = 17/49 (34%)
Query: 374 AMAGSSVLGSFGPXXXXXXXXXXHVYPNAPQSKSQGTGGGS-FPGYTSY 421
A A SS G G Y N S G G GS F G SY
Sbjct: 181 ASASSSQRGRSGSGNGYGRSSSYDSYNNGGGGGSFGGGSGSNFGGGGSY 229
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 201 (75.8 bits), Expect = 5.2e-14, P = 5.2e-14
Identities = 52/178 (29%), Positives = 86/178 (48%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 34 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 93
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 94 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDAN--------LYISGLPRTM 144
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 145 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK----RSEAEEAITSFNGHK 198
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 184 (69.8 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 49/170 (28%), Positives = 84/170 (49%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
++F+ GL ++TT ESL F G + +C ++ID T ++ F F+++ T + A+
Sbjct: 15 RLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVDAAVNV 74
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
KVN R+ ++A + + GA G +K +V + D E+ LR +FE++GE
Sbjct: 75 RPHKVN-RIGKPKMAV---SREDSQRPGAHLTG-KKTFVGGIKEDTEEHHLRHYFEQYGE 129
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
I I D + K RGFA + K + + Q GH + ++A
Sbjct: 130 IRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQKQHTVNGHNYEVRRA 179
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 196 (74.1 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 48/178 (26%), Positives = 89/178 (50%)
Query: 101 DRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
+R+ Q RK+F+ GL + TT+ESL + + G++ +C ++ D + +++GF F+ F +
Sbjct: 2 EREKEQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 61
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A+ ++ R+ + A V G + GA +K++V + D E+ LR
Sbjct: 62 EVDAAMAARPHSIDGRVVEPKRA-VAREESG--KPGAHVT-VKKLFVGGIKEDTEEHHLR 117
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F +G+I+T I D +GK RGF + + K + + GH + +KA
Sbjct: 118 DYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Score = 38 (18.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 409 GTGGGSFPGYTSY 421
G GGG+F G Y
Sbjct: 238 GPGGGNFGGSPGY 250
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 199 (75.1 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 52/178 (29%), Positives = 85/178 (47%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQE L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAIST-LNGLRLQSKTIKVSYARPSSEVIKDAN--------LYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK----RSEAEEAITSFNGHK 171
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 199 (75.1 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 52/178 (29%), Positives = 85/178 (47%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQE L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAIST-LNGLRLQSKTIKVSYARPSSEVIKDAN--------LYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK----RSEAEEAITSFNGHK 171
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 203 (76.5 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 48/178 (26%), Positives = 84/178 (47%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT +E L F GE+ E ++ D+ TG+A+GF F+VF A + +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD-PAVAEIVIT 65
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAA-QGE-------RKIYVSNVPRDVEKEKLR 219
+ ++ R+ + A V +++ QG RKI+V +P V + +
Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FE+FG + +D T + RGF Y + E K L + G ++ ++A
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
Score = 38 (18.4 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 365 GAIPASNVGAMAGS-SVLGSF 384
G +P+S+V A + S +GS+
Sbjct: 461 GGVPSSDVSARSSSPGYVGSY 481
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 186 (70.5 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 45/174 (25%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
+++V + ++ ++++ AF G I+ + D VT K KGFAF+ ++ +AA AL+
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 152
Query: 167 -NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
N + + +++G P + + A+ +IYV++V +D+ + ++ FE F
Sbjct: 153 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 212
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE--GHQLQCQKA 277
G+I++ + D TTGK +G+ Y+ + ++ A+ +F+ G L+ KA
Sbjct: 213 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 265
Score = 59 (25.8 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 346 GFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLG 382
G L PGL++P + A GA+P + + A A + G
Sbjct: 309 GTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITG 345
Score = 42 (19.8 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 17/70 (24%), Positives = 24/70 (34%)
Query: 351 PGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFG-PXXXXXXXXXXHVYPNAPQSKSQG 409
PG + P A A + A+AG++VLG+ P PQ+
Sbjct: 278 PGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLATPGLVSPALTLAQPLGALPQAVMAA 337
Query: 410 TGGGSFPGYT 419
G G T
Sbjct: 338 QAPGVITGVT 347
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 186 (70.5 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 45/174 (25%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
+++V + ++ ++++ AF G I+ + D VT K KGFAF+ ++ +AA AL+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 167 -NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
N + + +++G P + + A+ +IYV++V +D+ + ++ FE F
Sbjct: 161 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 220
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE--GHQLQCQKA 277
G+I++ + D TTGK +G+ Y+ + ++ A+ +F+ G L+ KA
Sbjct: 221 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 273
Score = 59 (25.8 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 346 GFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLG 382
G L PGL++P + A GA+P + + A A + G
Sbjct: 317 GTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITG 353
Score = 42 (19.8 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 17/70 (24%), Positives = 24/70 (34%)
Query: 351 PGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFG-PXXXXXXXXXXHVYPNAPQSKSQG 409
PG + P A A + A+AG++VLG+ P PQ+
Sbjct: 286 PGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLATPGLVSPALTLAQPLGALPQAVMAA 345
Query: 410 TGGGSFPGYT 419
G G T
Sbjct: 346 QAPGVITGVT 355
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 186 (70.5 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 45/174 (25%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
+++V + ++ ++++ AF G I+ + D VT K KGFAF+ ++ +AA AL+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 167 -NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
N + + +++G P + + A+ +IYV++V +D+ + ++ FE F
Sbjct: 161 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 220
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE--GHQLQCQKA 277
G+I++ + D TTGK +G+ Y+ + ++ A+ +F+ G L+ KA
Sbjct: 221 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 273
Score = 59 (25.8 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 346 GFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLG 382
G L PGL++P + A GA+P + + A A + G
Sbjct: 317 GTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITG 353
Score = 42 (19.8 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 17/70 (24%), Positives = 24/70 (34%)
Query: 351 PGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFG-PXXXXXXXXXXHVYPNAPQSKSQG 409
PG + P A A + A+AG++VLG+ P PQ+
Sbjct: 286 PGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLATPGLVSPALTLAQPLGALPQAVMAA 345
Query: 410 TGGGSFPGYT 419
G G T
Sbjct: 346 QAPGVITGVT 355
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 198 (74.8 bits), Expect = 8.2e-14, P = 8.2e-14
Identities = 53/178 (29%), Positives = 85/178 (47%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQE L S F GEIE KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDAN--------LYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F FG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDK----RSEAEEAITSFNGHK 171
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 186 (70.5 bits), Expect = 8.8e-14, Sum P(2) = 8.8e-14
Identities = 45/174 (25%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
+++V + ++ ++++ AF G I+ + D VT K KGFAF+ ++ +AA AL+
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173
Query: 167 -NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
N + + +++G P + + A+ +IYV++V +D+ + ++ FE F
Sbjct: 174 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 233
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE--GHQLQCQKA 277
G+I++ + D TTGK +G+ Y+ + ++ A+ +F+ G L+ KA
Sbjct: 234 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 286
Score = 59 (25.8 bits), Expect = 8.8e-14, Sum P(2) = 8.8e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 346 GFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLG 382
G L PGL++P + A GA+P + + A A + G
Sbjct: 330 GTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITG 366
Score = 42 (19.8 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 17/70 (24%), Positives = 24/70 (34%)
Query: 351 PGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFG-PXXXXXXXXXXHVYPNAPQSKSQG 409
PG + P A A + A+AG++VLG+ P PQ+
Sbjct: 299 PGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLATPGLVSPALTLAQPLGALPQAVMAA 358
Query: 410 TGGGSFPGYT 419
G G T
Sbjct: 359 QAPGVITGVT 368
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 192 (72.6 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 49/178 (27%), Positives = 88/178 (49%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
S KIFV GL +TT L FG GEI + ++ D+ TG+ +GF F+ + K
Sbjct: 40 SAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKV 99
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
+++ + ++ ++ P G + +KI+V +P V+ ++ + FF +
Sbjct: 100 IQDNHIIIGKQV---EIKRTIPRG----SMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQ 152
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKM-FEGHQLQCQKAAEGK 281
FGE++ I D +TG+SRGF Y++ + L + ++ G Q++ +KA K
Sbjct: 153 FGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210
Score = 47 (21.6 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 24/85 (28%), Positives = 31/85 (36%)
Query: 334 FGQHPGMHPLYGGFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFGPXXXXXXX 393
+G PG +YGG PG G + G P+ + G GSS +G +G
Sbjct: 319 YGGGPG--DMYGGSYGEPG-------GG-YGG--PSGSYGGGYGSSGIGGYGGGMGGAGG 366
Query: 394 XXXHVYPNAPQSKSQGTGGGSFPGY 418
Y G GGG GY
Sbjct: 367 GG---YRGGGGYDMGGVGGGGAGGY 388
Score = 46 (21.3 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 400 PNAPQSKSQGTGGGSFPGYTSY 421
P P G GGG GY Y
Sbjct: 247 PGGPYKSGGGYGGGRSGGYGGY 268
Score = 37 (18.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 409 GTGGGSFPG 417
G GGGSF G
Sbjct: 394 GNGGGSFYG 402
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 186 (70.5 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 45/174 (25%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
+++V + ++ ++++ AF G I+ + D VT K KGFAF+ ++ +AA AL+
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 167 -NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
N + + +++G P + + A+ +IYV++V +D+ + ++ FE F
Sbjct: 191 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 250
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE--GHQLQCQKA 277
G+I++ + D TTGK +G+ Y+ + ++ A+ +F+ G L+ KA
Sbjct: 251 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 303
Score = 59 (25.8 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 346 GFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLG 382
G L PGL++P + A GA+P + + A A + G
Sbjct: 347 GTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITG 383
Score = 42 (19.8 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 17/70 (24%), Positives = 24/70 (34%)
Query: 351 PGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFG-PXXXXXXXXXXHVYPNAPQSKSQG 409
PG + P A A + A+AG++VLG+ P PQ+
Sbjct: 316 PGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLATPGLVSPALTLAQPLGALPQAVMAA 375
Query: 410 TGGGSFPGYT 419
G G T
Sbjct: 376 QAPGVITGVT 385
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 186 (70.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 45/174 (25%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
+++V + ++ ++++ AF G I+ + D VT K KGFAF+ ++ +AA AL+
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 167 -NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
N + + +++G P + + A+ +IYV++V +D+ + ++ FE F
Sbjct: 195 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 254
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE--GHQLQCQKA 277
G+I++ + D TTGK +G+ Y+ + ++ A+ +F+ G L+ KA
Sbjct: 255 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 307
Score = 59 (25.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 346 GFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLG 382
G L PGL++P + A GA+P + + A A + G
Sbjct: 351 GTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITG 387
Score = 42 (19.8 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 17/70 (24%), Positives = 24/70 (34%)
Query: 351 PGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFG-PXXXXXXXXXXHVYPNAPQSKSQG 409
PG + P A A + A+AG++VLG+ P PQ+
Sbjct: 320 PGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLATPGLVSPALTLAQPLGALPQAVMAA 379
Query: 410 TGGGSFPGYT 419
G G T
Sbjct: 380 QAPGVITGVT 389
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 186 (70.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 45/174 (25%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
+++V + ++ ++++ AF G I+ + D VT K KGFAF+ ++ +AA AL+
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 167 -NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
N + + +++G P + + A+ +IYV++V +D+ + ++ FE F
Sbjct: 195 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 254
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE--GHQLQCQKA 277
G+I++ + D TTGK +G+ Y+ + ++ A+ +F+ G L+ KA
Sbjct: 255 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 307
Score = 59 (25.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 346 GFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLG 382
G L PGL++P + A GA+P + + A A + G
Sbjct: 351 GTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITG 387
Score = 42 (19.8 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 17/70 (24%), Positives = 24/70 (34%)
Query: 351 PGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFG-PXXXXXXXXXXHVYPNAPQSKSQG 409
PG + P A A + A+AG++VLG+ P PQ+
Sbjct: 320 PGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLATPGLVSPALTLAQPLGALPQAVMAA 379
Query: 410 TGGGSFPGYT 419
G G T
Sbjct: 380 QAPGVITGVT 389
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 193 (73.0 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 53/171 (30%), Positives = 90/171 (52%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T ++GF F+ + T K V A +
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKE-VDAAR 72
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ KV+ R+ + A + + GA RKI+V + D E+ LR +F+++G
Sbjct: 73 S--HKVDGRVVEPKRAV---SREDSQRPGAHLT-VRKIFVGGIKEDTEEHHLRDYFKQYG 126
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + + +++ + GH + +KA
Sbjct: 127 KIEVIEIMTDRGSGKKRGFASVTFDDHDKDKIVIQK-YYIVNGHNCEVRKA 176
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 199 (75.1 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 48/177 (27%), Positives = 84/177 (47%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L + F GE+ +C ++ DK T +++GF F+ FK L
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 168 PQRKVNNRMAS---CQLASVGP----TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
++ R C + P T G K + + +KI+V +P + + +LR
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKTRTKDGWKGSKSDSNKSKKIFVGGIPHNCGEAELRD 131
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F RFG + + +D + RGF ++ + +A+ G +++ +KA
Sbjct: 132 YFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKA 188
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 180 (68.4 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 45/170 (26%), Positives = 80/170 (47%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R GP K KI+V +P + + +LR +F++FG
Sbjct: 71 RPHTLDGRNQK------GPRSDNSKSN--------KIFVGGIPHNCGETELREYFKKFGV 116
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ + +D + RGF ++ + +A+ G +++ ++A
Sbjct: 117 VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 166
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 194 (73.4 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 49/183 (26%), Positives = 93/183 (50%)
Query: 97 LETAD-RDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
+E+ D ++ Q RK+F+ GL ++TT++SL + F G++ +C ++ D +++GF F+
Sbjct: 1 MESRDSKEPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVT 60
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVE 214
+ + A+ KV+ R+ + A + + GA +KI+V + D E
Sbjct: 61 YSSVSEVDAAMTARPHKVDGRVVEPKRAV---SREDSNKPGAHLT-VKKIFVGGIKEDTE 116
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274
+ +R +FE +G+IET I + +TGK RGF + + K + + H +
Sbjct: 117 EYHIREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEV 176
Query: 275 QKA 277
+KA
Sbjct: 177 RKA 179
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 194 (73.4 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 49/181 (27%), Positives = 87/181 (48%)
Query: 98 ETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
E R+ Q RK+F+ GL ++TT +SL + F G + +C ++ D T +++GF F+ +
Sbjct: 23 EGQPREPEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYS 82
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ ++ KV+ R+ + A + A +KI+V + D E+
Sbjct: 83 SVDEVNASMDARPHKVDGRLVEPKRA----VSREDSSKPFAHTTVKKIFVGGIKDDTEEN 138
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
LR +F++FG+IE I D TG RGFA + + + + + GH + +K
Sbjct: 139 HLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRK 198
Query: 277 A 277
A
Sbjct: 199 A 199
Score = 41 (19.5 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 397 HVYPNAPQSKSQGTGGGSFPGYTSY 421
H Y N G GG GY +Y
Sbjct: 313 HGYGNQGGGYGGGNSGGGGGGYNNY 337
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 194 (73.4 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 50/184 (27%), Positives = 89/184 (48%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D Q K+FV G+ W+T ++ L F GE+ + ++ DK+TG+ +GF F++F
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 163 KALKNPQ----RKVN-NRMASCQLASV-GPTGP--GVKEQGAAAQGE-RKIYVSNVPRDV 213
+ L+ R+V+ R S + V G TG + G A + +KI+V +P +
Sbjct: 62 RVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTL 121
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
E+ R +FE +G + I +D T + RGF + + + L + G Q++
Sbjct: 122 TDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVE 181
Query: 274 CQKA 277
++A
Sbjct: 182 VKRA 185
Score = 40 (19.1 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 407 SQGTGGGSFPGYT-SYMWYG 425
S G G G++ GYT S YG
Sbjct: 252 SNGAGYGAYGGYTGSAGGYG 271
>TAIR|locus:2102435 [details] [associations]
symbol:ARP1 "ABA-regulated RNA-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0010029
"regulation of seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0005634 EMBL:CP002686 GO:GO:0000166
GO:GO:0009651 GO:GO:0009414 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0010029 EMBL:AL138650 HSSP:P11940 IPI:IPI00531276 PIR:T47636
RefSeq:NP_191037.1 UniGene:At.20812 ProteinModelPortal:Q9M1S3
SMR:Q9M1S3 DNASU:824642 EnsemblPlants:AT3G54770.1 GeneID:824642
KEGG:ath:AT3G54770 TAIR:At3g54770 InParanoid:Q9M1S3 OMA:FYHFHQS
PhylomeDB:Q9M1S3 ProtClustDB:CLSN2685114 Genevestigator:Q9M1S3
Uniprot:Q9M1S3
Length = 261
Score = 177 (67.4 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D K+FV GL WDT +E++ F G+I E ++ DK+T ++KG+ F+ FK KAA
Sbjct: 13 DTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAAT 72
Query: 163 KALKNPQRKVNNRMASCQLASVG 185
+A ++ +N R A+C LAS+G
Sbjct: 73 RACEDSTPIINGRRANCNLASLG 95
Score = 43 (20.2 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 341 HPLYGGFLVNPGLINPMV 358
H +YGG V G +PMV
Sbjct: 197 HHMYGGGRVMVGAASPMV 214
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 193 (73.0 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 48/171 (28%), Positives = 84/171 (49%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+F+ G ++TT ESL S F G + +C ++ D T +++GF F+ + + A+
Sbjct: 14 QKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMH 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + S + + GA +KI+ + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRTS---SKEDSQRPGAHLT-VKKIFAGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKA 180
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 186 (70.5 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 49/170 (28%), Positives = 83/170 (48%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL ++TT +SL S F + +C L+ D + +++GF I + T + A+
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
KV+ R+ ++A + GA +KI+V D E+ LR +FE++G+
Sbjct: 61 RPHKVDGRVVEPKVAV---SREDSHRPGAHLT-VKKIFVGGSKEDTEEHHLRVYFEQYGK 116
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE I DI +GK RGFA + + + + GH + +KA
Sbjct: 117 IEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQKYHTVNGHNCEVRKA 166
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 196 (74.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 50/185 (27%), Positives = 90/185 (48%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 PQRKVNNRMAS---CQLASVGP--TGP--GVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
++ R C + P T P G K + + KI+V +P + + +LR
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWKGPRSDSSKSNKIFVGGIPHNCGETELRE 130
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA-- 278
+F++FG + + +D + RGF ++ + +A+ G +++ ++A
Sbjct: 131 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 190
Query: 279 EGKNR 283
+ KN+
Sbjct: 191 DSKNQ 195
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 177 (67.4 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 50/174 (28%), Positives = 83/174 (47%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S S C ++ D T ++GF F+ + T + A+
Sbjct: 13 RKLFIGGLSFETTDESLRSHCSHS---PSC-VMTDPNTKCSRGFRFVTYATVEEVDAAMN 68
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + G + G + GA +KI+ + D E+ LR +FE+ G
Sbjct: 69 ARPHKVDRRVVEPKR---GVSREGSQRPGAHLT-VKKIFAGGIKEDTEERHLRDYFEKPG 124
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
+IE I D ++GK RGFA + + K + + GH + ++ G
Sbjct: 125 KIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNRERGRSGSG 178
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 195 (73.7 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 50/166 (30%), Positives = 89/166 (53%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+++ + + S+ + V+ L TQE L S FG GEIE CKLV DK+TG++ G+ F+ +
Sbjct: 57 IDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYV 116
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
K A KA+ N + + + +++ P+ +++ +YVS +P+ + ++
Sbjct: 117 DPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQK 167
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
+L F ++G I T I D TG SRG + K +E A +A++
Sbjct: 168 ELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIE-AEEAIK 212
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 200 (75.5 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 55/190 (28%), Positives = 93/190 (48%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
+ A R Q +F+ L ++L F G I CK+ D+ G +KG+ F+ ++T
Sbjct: 140 DPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYET 198
Query: 158 RKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERK---IYVSNVPRDVE 214
+AA +A+K+ VN + + + VG P Q + + IYV N+ +V
Sbjct: 199 DEAASQAIKH----VNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVT 254
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-PQKMFEGHQLQ 273
++ R FE++G++ + + D TGKSRGF + + E A KA++E +K F G L
Sbjct: 255 DDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLY 314
Query: 274 CQKAAEGKNR 283
+A + R
Sbjct: 315 VGRAQKKHER 324
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 195 (73.7 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 49/187 (26%), Positives = 92/187 (49%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK L +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 168 PQRKVNNRMAS---CQLASVGPTGPGVKE---QGAAAQGER--KIYVSNVPRDVEKEKLR 219
++ R C + P KE +G+ + + KI+V +P + + +LR
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELR 120
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA- 278
+F++FG + + +D + RGF ++ + +A+ G +++ ++A
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 180
Query: 279 -EGKNRT 284
+ K++T
Sbjct: 181 RDSKSQT 187
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 186 (70.5 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 45/174 (25%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
+++V + ++ ++++ AF G I+ + D VT K KGFAF+ ++ +AA AL+
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 167 -NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
N + + +++G P + + A+ +IYV++V +D+ + ++ FE F
Sbjct: 190 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 249
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE--GHQLQCQKA 277
G+I++ + D TTGK +G+ Y+ + ++ A+ +F+ G L+ KA
Sbjct: 250 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 302
Score = 52 (23.4 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 346 GFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLG 382
G L PGL++P + A G +P + + A A + G
Sbjct: 346 GTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITG 382
Score = 50 (22.7 bits), Expect = 8.4e-13, Sum P(2) = 8.4e-13
Identities = 18/70 (25%), Positives = 25/70 (35%)
Query: 351 PGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFG-PXXXXXXXXXXHVYPNAPQSKSQG 409
PG + P A A + A+AG++VLG+ G P PQ+
Sbjct: 315 PGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAA 374
Query: 410 TGGGSFPGYT 419
G G T
Sbjct: 375 QAPGVITGVT 384
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 197 (74.4 bits), Expect = 5.4e-13, P = 5.4e-13
Identities = 46/170 (27%), Positives = 86/170 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT +SL F GE++EC ++ D TG+++GF F+ FK K V +
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKT-VNTVMV 169
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ ++ ++ + A P +++ + KI+V V ++ ++ + FF +FG
Sbjct: 170 KEHYLDGKIIDPKRAI-----PRDEQEKTS-----KIFVGGVSQEATEQDFKQFFMQFGR 219
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ + D TG+ RGF + + AL P ++ G ++ +KA
Sbjct: 220 VIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRPLEIL-GKTIEVKKA 268
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 175 (66.7 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 41/115 (35%), Positives = 65/115 (56%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ T +D + KIFV GL + TT SL F G+IEE ++ D+ TGK++G+ F+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
R AA +A K+P ++ R A+ LA +G P + + G A G ++I+ + V R
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRIMQPGFAF-GVQQIHPALVQR 113
Score = 111 (44.1 bits), Expect = 0.00050, P = 0.00050
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FG+IE + D TGKSRG+ A +A ++
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 72 PNPIIDGRKANVNLAYLG 89
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 192 (72.6 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 50/166 (30%), Positives = 90/166 (54%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+++ + + S+ + V+ L + TQE L S FG GEIE CKLV DK+TG++ G+ F+ +
Sbjct: 29 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
K A KA+ N + + + +++ P+ +++ +YVS +P+ + ++
Sbjct: 89 DPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQK 139
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
+L F ++G I T I D TG SRG + K +E A +A++
Sbjct: 140 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE-AEEAIK 184
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 186 (70.5 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 53/178 (29%), Positives = 87/178 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAF-G---GS---GEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
RK+F+ GL ++TT +SL F G GS G + +C ++ D T +++GF F+ + +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE 72
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
P KV+ R+ + A VK GA +KI+V + D + LR
Sbjct: 73 VDAAMCARPH-KVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTGEYNLR 127
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 128 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 185
Score = 43 (20.2 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 399 YPNAPQSKSQGTGGGSFPGY 418
Y P S+G GG PGY
Sbjct: 261 YGGGPGYSSRGGYGGGGPGY 280
Score = 40 (19.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 409 GTGG--GSFPGYTSYMWYG 425
G GG G PGY+S YG
Sbjct: 256 GDGGNYGGGPGYSSRGGYG 274
Score = 39 (18.8 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 18/65 (27%), Positives = 22/65 (33%)
Query: 363 HQGAIPASNVGAMAGSSVLGSFGPXXXXXXXXXXHV--YPNAPQSKSQGTGGGSFPGYTS 420
+QG G G + G+FG Y QS GGSF G +S
Sbjct: 282 NQGGGYGGGAGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSS 341
Query: 421 YMWYG 425
YG
Sbjct: 342 GSPYG 346
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 193 (73.0 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 51/158 (32%), Positives = 85/158 (53%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
S+ + V+ L + TQE L S FG GEIE CKLV DK+TG++ G+ F+ + K A KA
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKA 125
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
+ N + + + +++ P+ +++ +YVS +P+ + +++L F +
Sbjct: 126 I-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELEQLFSQ 176
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
FG I T I D TG SRG + + VE A +A++
Sbjct: 177 FGRIITSRILVDQVTGVSRGVGFIRFDRRVE-AEEAIK 213
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 192 (72.6 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 50/166 (30%), Positives = 90/166 (54%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+++ + + S+ + V+ L + TQE L S FG GEIE CKLV DK+TG++ G+ F+ +
Sbjct: 29 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
K A KA+ N + + + +++ P+ +++ +YVS +P+ + ++
Sbjct: 89 DPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQK 139
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
+L F ++G I T I D TG SRG + K +E A +A++
Sbjct: 140 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE-AEEAIK 184
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 192 (72.6 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 50/166 (30%), Positives = 90/166 (54%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+++ + + S+ + V+ L + TQE L S FG GEIE CKLV DK+TG++ G+ F+ +
Sbjct: 29 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
K A KA+ N + + + +++ P+ +++ +YVS +P+ + ++
Sbjct: 89 DPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQK 139
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
+L F ++G I T I D TG SRG + K +E A +A++
Sbjct: 140 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE-AEEAIK 184
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 192 (72.6 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 45/170 (26%), Positives = 80/170 (47%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ ESL FG G+I E ++ D T +++GF F+ F + K L
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A P + + +KI+V + E ++ +FE+FG
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKMVTR------TKKIFVGGLSAPTTLEDVKSYFEQFGP 143
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD T + RGF +++ + K E ++C+KA
Sbjct: 144 IEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKA 193
Score = 132 (51.5 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT E + S F G IE+ L+ DK T + +GF F+ F++ K +
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 178 IHFHEINNKMVECKKA 193
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 174 (66.3 bits), Expect = 7.7e-13, P = 7.7e-13
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ T +D + KIFV GL + TT SL F GEIEE ++ D+ TGK++G+ F+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
R AA +A K+P ++ R A+ LA +G P + + G A G ++++ + + R
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRIMQPGFAF-GVQQLHPALIQR 113
Score = 113 (44.8 bits), Expect = 0.00034, P = 0.00034
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FGEIE + D TGKSRG+ A +A ++
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 72 PNPIIDGRKANVNLAYLG 89
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 174 (66.3 bits), Expect = 7.7e-13, P = 7.7e-13
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ T +D + KIFV GL + TT SL F GEIEE ++ D+ TGK++G+ F+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
R AA +A K+P ++ R A+ LA +G P + + G A G ++++ + + R
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRIMQPGFAF-GVQQLHPALIQR 113
Score = 113 (44.8 bits), Expect = 0.00034, P = 0.00034
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FGEIE + D TGKSRG+ A +A ++
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 72 PNPIIDGRKANVNLAYLG 89
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 174 (66.3 bits), Expect = 7.7e-13, P = 7.7e-13
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ T +D + KIFV GL + TT SL F G+IEE ++ D+ TGK++G+ F+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
R AA +A K+P ++ R A+ LA +G P + + G A G ++I+ + + R
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRIMQPGFAF-GVQQIHPALIQR 113
Score = 111 (44.1 bits), Expect = 0.00051, P = 0.00051
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FG+IE + D TGKSRG+ A +A ++
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 72 PNPIIDGRKANVNLAYLG 89
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 174 (66.3 bits), Expect = 7.7e-13, P = 7.7e-13
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ T +D + KIFV GL + TT SL F G+IEE ++ D+ TGK++G+ F+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
R AA +A K+P ++ R A+ LA +G P + + G A G ++I+ + + R
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRIMQPGFAF-GVQQIHPALIQR 113
Score = 111 (44.1 bits), Expect = 0.00052, P = 0.00052
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FG+IE + D TGKSRG+ A +A ++
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 72 PNPIIDGRKANVNLAYLG 89
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 193 (73.0 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 49/186 (26%), Positives = 90/186 (48%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 PQRKVNNRMAS---CQLASVGPTGPGVKE---QGAAAQGER--KIYVSNVPRDVEKEKLR 219
++ R C + P KE +G + + KI+V +P + + +LR
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELR 130
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA- 278
+F++FG + + +D + RGF ++ + +A+ G +++ ++A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 279 -EGKNR 283
+ KN+
Sbjct: 191 RDSKNQ 196
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 193 (73.0 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 49/186 (26%), Positives = 90/186 (48%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 PQRKVNNRMAS---CQLASVGPTGPGVKE---QGAAAQGER--KIYVSNVPRDVEKEKLR 219
++ R C + P KE +G + + KI+V +P + + +LR
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELR 130
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA- 278
+F++FG + + +D + RGF ++ + +A+ G +++ ++A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 279 -EGKNR 283
+ KN+
Sbjct: 191 RDSKNQ 196
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 182 (69.1 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 49/179 (27%), Positives = 88/179 (49%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA + K+FV GL TT + L + F G++ +C +V ++ +++ F F+ + +
Sbjct: 2 TAQMENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSP 61
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
A A+ ++ + A V G E A A+ +KI++ + D+E++ L
Sbjct: 62 DEADSAMSARPHILDGNNVELKRA-VAREDAGKPE--ALAK-VKKIFIGGLKDDIEEDHL 117
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
R F +FG +E + D TGK RGF ++ + A KA+ M GH+++ +KA
Sbjct: 118 RDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEVKKA 176
Score = 41 (19.5 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 401 NAPQSKSQGTGGGSFPGY 418
NAP S+ G GG GY
Sbjct: 284 NAPYSRGGGGGGYGRGGY 301
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 189 (71.6 bits), Expect = 8.8e-13, P = 8.8e-13
Identities = 52/170 (30%), Positives = 85/170 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL TT + L S F G + +C +V + +++ F F+ + T + A A+
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
V+ + + A V G E A A+ +KI+V + D+E++ L FF +FG
Sbjct: 69 RPHVVDGKNVEVKRA-VAREDAGRPE--ALAK-VKKIFVGGLKDDIEEKDLTEFFSQFGM 124
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + D TGK RGF ++ + A KA+ M GH+++ +KA
Sbjct: 125 IEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKA 174
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 192 (72.6 bits), Expect = 8.8e-13, P = 8.8e-13
Identities = 50/166 (30%), Positives = 90/166 (54%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+++ + + S+ + V+ L + TQE L S FG GEIE CKLV DK+TG++ G+ F+ +
Sbjct: 57 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 116
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
K A KA+ N + + + +++ P+ +++ +YVS +P+ + ++
Sbjct: 117 DPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQK 167
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
+L F ++G I T I D TG SRG + K +E A +A++
Sbjct: 168 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE-AEEAIK 212
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 192 (72.6 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 50/166 (30%), Positives = 90/166 (54%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+++ + + S+ + V+ L + TQE L S FG GEIE CKLV DK+TG++ G+ F+ +
Sbjct: 58 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
K A KA+ N + + + +++ P+ +++ +YVS +P+ + ++
Sbjct: 118 DPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQK 168
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
+L F ++G I T I D TG SRG + K +E A +A++
Sbjct: 169 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE-AEEAIK 213
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 192 (72.6 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 50/166 (30%), Positives = 90/166 (54%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+++ + + S+ + V+ L + TQE L S FG GEIE CKLV DK+TG++ G+ F+ +
Sbjct: 58 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
K A KA+ N + + + +++ P+ +++ +YVS +P+ + ++
Sbjct: 118 DPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQK 168
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
+L F ++G I T I D TG SRG + K +E A +A++
Sbjct: 169 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE-AEEAIK 213
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 191 (72.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 44 ATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 103
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 104 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 154
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 155 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 196
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 190 (71.9 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 37 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 96
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 97 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 147
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 148 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 189
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 191 (72.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 39 ATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 98
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 99 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 149
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 150 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 191
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 192 (72.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 47/170 (27%), Positives = 81/170 (47%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQKPKKGGGY-KVFLGGLPSNVTETDLRTFFNRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ I +D KSRGF ++ E G Q++ +KA
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKA 171
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 191 (72.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 44 ATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 103
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 104 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 154
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 155 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 196
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 181 (68.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 51/171 (29%), Positives = 82/171 (47%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S S C ++ D T ++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHCSHS---PSC-VMTDPNTKCSRGFRFVTYATVEEVDAAMN 69
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + G + G + GA +KI+ + D E+ LR +FE G
Sbjct: 70 ARPHKVDRRVVEPKR---GVSREGSQRPGAHLT-VKKIFAGGIKEDTEERHLRDYFENNG 125
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D ++GK RGFA + + K + + GH + +KA
Sbjct: 126 KIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNREVRKA 176
Score = 40 (19.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 404 QSKSQGTGGGSFPGYTSYMWYG 425
+S GGG + G++S YG
Sbjct: 275 RSSGPDGGGGGYGGFSSSSNYG 296
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 191 (72.3 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 47/178 (26%), Positives = 86/178 (48%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK L +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 168 PQRKVNNRMAS---CQLASVGPTGPGVKE---QGAAAQGER--KIYVSNVPRDVEKEKLR 219
++ R C + P KE +G + + KI+V +P + + +LR
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 120
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F++FG + + +D + RGF ++ + +A+ G +++ ++A
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 178
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 172 (65.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 38/99 (38%), Positives = 56/99 (56%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ T +D + KIFV GL + TT SL F GEIEE ++ D+ TGK++G+ F+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQG 195
R AA +A K+P ++ R A+ LA +G P V + G
Sbjct: 61 DRSAADRACKDPNPIIDGRKANVNLAYLGAK-PRVMQPG 98
Score = 113 (44.8 bits), Expect = 0.00032, P = 0.00032
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FGEIE + D TGKSRG+ A +A ++
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 72 PNPIIDGRKANVNLAYLG 89
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 172 (65.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 39/115 (33%), Positives = 65/115 (56%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ T +D + KIFV GL + TT SL F G+IEE ++ D+ TGK++G+ F+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
R AA +A K+P ++ R A+ LA +G P + + G A G ++++ + + R
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRIMQPGFAF-GVQQLHPALIQR 113
Score = 111 (44.1 bits), Expect = 0.00051, P = 0.00051
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FG+IE + D TGKSRG+ A +A ++
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 72 PNPIIDGRKANVNLAYLG 89
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 190 (71.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 39 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 98
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 99 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 149
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 150 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 191
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 190 (71.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 39 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 98
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 99 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 149
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 150 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 191
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 190 (71.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 44 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 103
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 104 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 154
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 155 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 196
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 191 (72.3 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 47/178 (26%), Positives = 86/178 (48%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 PQRKVNNRMAS---CQLASVGPTGPGVKE---QGAAAQGER--KIYVSNVPRDVEKEKLR 219
++ R C + P KE +G + + KI+V +P + + +LR
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F++FG + + +D + RGF ++ + +A+ G +++ ++A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 191 (72.3 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 47/178 (26%), Positives = 86/178 (48%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 PQRKVNNRMAS---CQLASVGPTGPGVKE---QGAAAQGER--KIYVSNVPRDVEKEKLR 219
++ R C + P KE +G + + KI+V +P + + +LR
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F++FG + + +D + RGF ++ + +A+ G +++ ++A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 191 (72.3 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 47/178 (26%), Positives = 86/178 (48%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 PQRKVNNRMAS---CQLASVGPTGPGVKE---QGAAAQGER--KIYVSNVPRDVEKEKLR 219
++ R C + P KE +G + + KI+V +P + + +LR
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F++FG + + +D + RGF ++ + +A+ G +++ ++A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 190 (71.9 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 32 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 92 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 142
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 143 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 184
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 190 (71.9 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 32 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 92 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 142
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 143 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 184
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 190 (71.9 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 39 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 98
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 99 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 149
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 150 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 191
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 190 (71.9 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 55 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 114
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 115 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 165
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 166 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 207
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 190 (71.9 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 43 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 102
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 103 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 153
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 154 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 195
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 190 (71.9 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 51/163 (31%), Positives = 86/163 (52%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 44 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 103
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 104 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELE 154
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
F ++G I T I D TG SRG + K +E A +A++
Sbjct: 155 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 196
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 189 (71.6 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 49/188 (26%), Positives = 92/188 (48%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 PQRKVNNRMAS---CQLASVGP--TGP--GVKEQGAAAQGER--KIYVSNVPRDVEKEKL 218
++ R C + P + P G +++ + R KI+V +P + + +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETEL 130
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+ +F RFG + + +D + RGF ++ + +A+ G +++ ++A
Sbjct: 131 KEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 190
Query: 279 --EGKNRT 284
+ K++T
Sbjct: 191 PRDSKSQT 198
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 186 (70.5 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 49/170 (28%), Positives = 83/170 (48%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL TT E L + F G++ +C +V+++ +++ F F+ + + + A A+
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
V+ + A V G E A +KI+V + D+E E L+ +F +FG
Sbjct: 67 RPHIVDGNNVDLKRA-VAREDAGKPEMLAKV---KKIFVGGLKDDIEDEHLQDYFSQFGP 122
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + D TGK RGF + + A KA+ GH+++ +KA
Sbjct: 123 IEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKA 172
Score = 112 (44.5 bits), Expect = 0.00080, P = 0.00080
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+KIFV GL D E L F G IE+ +++ DK TGK +GF F+ F +A KA+
Sbjct: 97 KKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAV 155
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 121 (47.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
+KI+V + D E+ LR +FE++G+IE I D +GK RGFA + + K +
Sbjct: 56 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 115
Query: 262 EPQKMFEGHQLQCQKA 277
+ GH + +KA
Sbjct: 116 QKYHTVNGHNCEVRKA 131
Score = 104 (41.7 bits), Expect = 0.00016, P = 0.00016
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV G+ DT + L F G+IE +++ D+ +GK +GFAF+ F + K +
Sbjct: 56 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 115
Query: 167 NPQRKVNNRMASCQL 181
VN +C++
Sbjct: 116 QKYHTVNGH--NCEV 128
Score = 71 (30.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEEC 136
RK+F+ GL ++TT ESL S F G + +C
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDC 43
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 186 (70.5 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 49/167 (29%), Positives = 81/167 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ L ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+KVN R+ + A + + GA +KI+V + D E LR +FE++G
Sbjct: 74 ARPQKVNGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEHH-LRDYFEQYG 128
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
+ E I D GK RGFA + + K + + GH +
Sbjct: 129 KTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 175
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 186 (70.5 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 48/170 (28%), Positives = 84/170 (49%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL ++TT ESL S F G + C ++ D T +++GF F++F T + A+
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
KVN R+ + V ++ AA +KI+V + D E+ + +FE++G+
Sbjct: 75 RPNKVNGRVLEPK-RFVSRED---SQRPAAYLTVKKIFVGGIKEDTEEHE--DYFEQYGK 128
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E + D +GK RGFA + + + + + GH + +KA
Sbjct: 129 FEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKA 178
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 170 (64.9 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 39/112 (34%), Positives = 64/112 (57%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
+ +D + KIFV GL + TT SL F G G+IEE ++ D+ TGK++G+ F+ R
Sbjct: 27 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 86
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
AA +A K+P ++ R A+ LA +G P + G A G ++++ + + R
Sbjct: 87 AAERACKDPNPNIDGRKANVNLAYLGAK-PRSLQTGFAI-GVQQLHPTLIQR 136
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 28/95 (29%), Positives = 39/95 (41%)
Query: 186 PTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGF 245
P PG KI+V +P LR +FE FG+IE + D TGKSRG+
Sbjct: 18 PAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY 77
Query: 246 AIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
A +A ++P +G + A G
Sbjct: 78 GFVTMADRAAAERACKDPNPNIDGRKANVNLAYLG 112
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 178 (67.7 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 48/179 (26%), Positives = 85/179 (47%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
S KIF+ GL DTT FG GEI + ++ D+ TG+ +GF FI F K
Sbjct: 17 SPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV 76
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
+++ +N + ++ P G G + +KI+V +P V +++L+ FF +
Sbjct: 77 IEDTH-VINGKQV--EIKRTIPKGAGGNQSKDIKT--KKIFVGGIPSTVTEDELKDFFAK 131
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKM-FEGHQLQCQKAAEGKN 282
+G + + D T +SRGF ++ + E + L + + Q++ +KA K+
Sbjct: 132 YGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKS 190
Score = 47 (21.6 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 22/89 (24%), Positives = 31/89 (34%)
Query: 337 HPGMHPLY-GGFLVNPGLINPMVAGALHQ---GAIPA-SNVGAMAGSSVLGSFGPXXXXX 391
H G Y GG+ G + P G + G++ N + SS G +G
Sbjct: 235 HGGPASRYAGGYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGGE 294
Query: 392 XXXXXH--VYPNAPQSKSQGTGGGSFPGY 418
Y P+ +G GG PGY
Sbjct: 295 GYGRGGEGAYLGYPRGGGEGYGGYGGPGY 323
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 189 (71.6 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 50/160 (31%), Positives = 85/160 (53%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K A
Sbjct: 84 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 143
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
KA+ N + + + +++ P+ +++ +YVS +P+ + +++L F
Sbjct: 144 KAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQKELEQLF 194
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
++G I T I D TG SRG + K +E A +A++
Sbjct: 195 SQYGRIITSRILVDQVTGGSRGVGFIRFDKRIE-AEEAIK 233
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 186 (70.5 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 45/174 (25%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
+++V + ++ ++++ AF G I+ + D VT K KGFAF+ ++ +AA AL+
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 167 -NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
N + + +++G P + + A+ +IYV++V +D+ + ++ FE F
Sbjct: 172 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 231
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE--GHQLQCQKA 277
G+I++ + D TTGK +G+ Y+ + ++ A+ +F+ G L+ KA
Sbjct: 232 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 284
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 186 (70.5 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 45/174 (25%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
+++V + ++ ++++ AF G I+ + D VT K KGFAF+ ++ +AA AL+
Sbjct: 128 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 187
Query: 167 -NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
N + + +++G P + + A+ +IYV++V +D+ + ++ FE F
Sbjct: 188 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 247
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE--GHQLQCQKA 277
G+I++ + D TTGK +G+ Y+ + ++ A+ +F+ G L+ KA
Sbjct: 248 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 300
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 191 (72.3 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 56/185 (30%), Positives = 92/185 (49%)
Query: 100 ADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
+ RD S RK +F+ L ++L F G I CK+V D +KGF F+
Sbjct: 86 SQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDD-GNSSKGFGFVH 144
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE-RKIYVSNVPRDV 213
++T+++A KA+ KVN M + Q VGP KE+G + + ++ N+ DV
Sbjct: 145 YETQESADKAIA----KVNGMMINGQKVFVGPFKSS-KERGQPTEVKFTNVFFKNLSEDV 199
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE-EPQKMFEGHQL 272
++L+ +++GEI I D GKS+GF +++ E A+ +E E K+F G +
Sbjct: 200 GPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPI 258
Query: 273 QCQKA 277
+A
Sbjct: 259 YAGRA 263
Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
Identities = 38/162 (23%), Positives = 67/162 (41%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
+V +F L D + L GEI ++ D GK+KGF F F++ +AA
Sbjct: 184 EVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADD-KGKSKGFGFANFESAEAAK 242
Query: 163 KALKNPQRKV--NNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
++N K+ + + + +K +Y+ N+ ++ +KLR
Sbjct: 243 NVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLRE 302
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
F +FG I + + D S+GF Y + A +A+ E
Sbjct: 303 VFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTE 344
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 181 (68.8 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 38/101 (37%), Positives = 59/101 (58%)
Query: 89 IPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAK 148
IP H L + D + K+FV GL W+T E+L F G+I E ++ DK TG++K
Sbjct: 6 IPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSK 65
Query: 149 GFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGP 189
G+ F+ F+ +AA +A +P ++ R A+C LAS+G + P
Sbjct: 66 GYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRP 106
Score = 129 (50.5 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 23/81 (28%), Positives = 46/81 (56%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + + E LR F+++G+I + D TG+S+G+ ++ E AR+A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + +G + C A+ G++R
Sbjct: 85 PTPIIDGRRANCNLASLGRSR 105
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 168 (64.2 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 36/99 (36%), Positives = 57/99 (57%)
Query: 98 ETADRDVSQR-----------KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGK 146
+T DRDV+Q KI+V GL W+T E L S F G+I +V D+ TG+
Sbjct: 32 DTCDRDVAQHYANENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGR 91
Query: 147 AKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
++G+ F+ F+ ++A +A +NP+ ++ R A C LA +G
Sbjct: 92 SEGYGFVTFRDAESATRACQNPKPVIDGREAKCNLAYIG 130
Score = 134 (52.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KIYV +P + E LR +FE+FG+I + D TG+S G+ ++ E A +A +
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQN 112
Query: 263 PQKMFEGHQLQCQKAAEG 280
P+ + +G + +C A G
Sbjct: 113 PKPVIDGREAKCNLAYIG 130
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 168 (64.2 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 39/100 (39%), Positives = 58/100 (58%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
+SQ KI+V L +D T + L S FG GEIEE KL++D+ TG++KGFAFI + T+ AA +
Sbjct: 15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 164 ALKNPQR-KVNNRMASCQLASVGPTGPGVKEQGAAAQGER 202
A+ + R +A TG ++ G+ +G R
Sbjct: 75 AVSKANGIDLQGRKIRVNIAREN-TGDRRRDGGSGGRGGR 113
Score = 131 (51.2 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+ KIYV ++ DV ++L+ FF ++GEIE + D TG+S+GFA Y T + A++A+
Sbjct: 17 QNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76
Query: 261 EEPQKM-FEGHQLQCQKAAE 279
+ + +G +++ A E
Sbjct: 77 SKANGIDLQGRKIRVNIARE 96
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 168 (64.2 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 39/100 (39%), Positives = 58/100 (58%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
+SQ KI+V L +D T + L S FG GEIEE KL++D+ TG++KGFAFI + T+ AA +
Sbjct: 15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 164 ALKNPQR-KVNNRMASCQLASVGPTGPGVKEQGAAAQGER 202
A+ + R +A TG ++ G+ +G R
Sbjct: 75 AVSKANGIDLQGRKIRVNIAREN-TGDRRRDGGSGGRGGR 113
Score = 131 (51.2 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+ KIYV ++ DV ++L+ FF ++GEIE + D TG+S+GFA Y T + A++A+
Sbjct: 17 QNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76
Query: 261 EEPQKM-FEGHQLQCQKAAE 279
+ + +G +++ A E
Sbjct: 77 SKANGIDLQGRKIRVNIARE 96
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 168 (64.2 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 46/169 (27%), Positives = 80/169 (47%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+ + GL ++TT +SL G + +C ++ D T ++GF F+ + + A+
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
KV+ R+ + A VK GA +KI+V + D E+ LR +FE++G+I
Sbjct: 61 PHKVDGRVVEPKRAV--SREDSVKP-GAHLT-VKKIFVGGIKEDTEEYNLRDYFEKYGKI 116
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
ET + D +GK RGFA + + K + + H + +KA
Sbjct: 117 ETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKA 165
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 184 (69.8 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 50/170 (29%), Positives = 87/170 (51%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL ++TT+ESL S F G +C ++ D T +++G F+++ T + V A N
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEE-VDAAMN 73
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ V+ R+ + A + + GA +KI+V + D E+ LR +FE++G+
Sbjct: 74 ARPHVDGRVVEPKRAV---SREDSQRPGAHLT-VKKIFVGGIKEDTEEHHLRDYFEQYGK 129
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE I D +GK +GFA + + K + + GH + +KA
Sbjct: 130 IEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQKYHPVNGHSCEVRKA 178
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 190 (71.9 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 61/192 (31%), Positives = 96/192 (50%)
Query: 100 ADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
+ RD S RK +F+ L ++L F G I CK+V D+ G +KG+AF+
Sbjct: 16 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 73
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVK---EQGAAAQGERKIYVSNVPR 211
F+T++AA KA++ K+N + + + VG + E GA A+ +Y+ N
Sbjct: 74 FETQEAANKAIE----KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGE 129
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGH 270
+V+ E LR F +FG+ + + D + GKS+GF Y+ E A KA+EE K G
Sbjct: 130 EVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 188
Query: 271 QL---QCQKAAE 279
+ + QK E
Sbjct: 189 SIFVGRAQKKVE 200
Score = 130 (50.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 43/167 (25%), Positives = 78/167 (46%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+++ G + E+L F G+ K++ D +GK+KGF F+ ++ + A KA++
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVE-- 178
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQG------ER-------KIYVSNVPRDVEK 215
++N + S + VG V+ Q + ER +Y+ N+ ++
Sbjct: 179 --EMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 236
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
EKLR F FG I + + + G+S+GF + + E A KA+ E
Sbjct: 237 EKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 281
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 182 (69.1 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 35/98 (35%), Positives = 57/98 (58%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T + + F GEI E ++ DK TGK+KG+ F+ F+ +A
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 163 KALKNPQRKVNNRMASCQLASVG---PTGPGVKEQGAA 197
+A+ +P ++ R A+C +AS G P+ P + QG +
Sbjct: 73 RAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGS 110
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/81 (28%), Positives = 46/81 (56%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + +++R +F++FGEI I D TGKS+G+ ++ + A +A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + +G + C A+ G+ R
Sbjct: 78 PNPVIDGRKANCNIASFGRPR 98
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 190 (71.9 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 61/192 (31%), Positives = 96/192 (50%)
Query: 100 ADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
+ RD S RK +F+ L ++L F G I CK+V D+ G +KG+AF+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVK---EQGAAAQGERKIYVSNVPR 211
F+T++AA KA++ K+N + + + VG + E GA A+ +Y+ N
Sbjct: 145 FETQEAANKAIE----KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGE 200
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGH 270
+V+ E LR F +FG+ + + D + GKS+GF Y+ E A KA+EE K G
Sbjct: 201 EVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 259
Query: 271 QL---QCQKAAE 279
+ + QK E
Sbjct: 260 SIFVGRAQKKVE 271
Score = 130 (50.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 43/167 (25%), Positives = 78/167 (46%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+++ G + E+L F G+ K++ D +GK+KGF F+ ++ + A KA++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVE-- 249
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQG------ER-------KIYVSNVPRDVEK 215
++N + S + VG V+ Q + ER +Y+ N+ ++
Sbjct: 250 --EMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
EKLR F FG I + + + G+S+GF + + E A KA+ E
Sbjct: 308 EKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 352
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 167 (63.8 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 39/112 (34%), Positives = 64/112 (57%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
+ +D + KIFV GL + TT SL F G G+IEE ++ D+ TGK++G+ F+ R
Sbjct: 4 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 63
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
AA +A K+P ++ R A+ LA +G P + G A G ++++ + + R
Sbjct: 64 AAERACKDPNPIIDGRKANVNLAYLGAK-PRSLQTGFAI-GVQQLHPTLIQR 113
Score = 111 (44.1 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FG+IE + D TGKSRG+ A +A ++
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 72 PNPIIDGRKANVNLAYLG 89
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 183 (69.5 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 46/170 (27%), Positives = 86/170 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F + A+
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R+ + A V G + GA +K++V + D E+ LR +FE +G+
Sbjct: 70 RPHSIDGRVVEPKRA-VAREESG--KPGAHVT-VKKLFVGGIKEDTEEHHLRDYFEEYGK 125
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
I+T I D +GK RGF + + K + + GH + +KA
Sbjct: 126 IDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQKYHTKNGHNAEVRKA 174
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 185 (70.2 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 49/166 (29%), Positives = 89/166 (53%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+++ + + S+ + + L + TQE L S FG GEIE CKLV DK+TG++ G+ F+ +
Sbjct: 29 VDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
K A KA+ N + + + +++ P+ +++ +YVS +P+ + ++
Sbjct: 89 DPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQK 139
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
+L F ++G I T I D TG SRG + K +E A +A++
Sbjct: 140 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE-AEEAIK 184
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 185 (70.2 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 49/166 (29%), Positives = 89/166 (53%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+++ + + S+ + + L + TQE L S FG GEIE CKLV DK+TG++ G+ F+ +
Sbjct: 29 VDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
K A KA+ N + + + +++ P+ +++ +YVS +P+ + ++
Sbjct: 89 DPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQK 139
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
+L F ++G I T I D TG SRG + K +E A +A++
Sbjct: 140 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE-AEEAIK 184
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 190 (71.9 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 61/192 (31%), Positives = 96/192 (50%)
Query: 100 ADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
+ RD S RK +F+ L ++L F G I CK+V D+ G +KG+AF+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVK---EQGAAAQGERKIYVSNVPR 211
F+T++AA KA++ K+N + + + VG + E GA A+ +Y+ N
Sbjct: 145 FETQEAANKAIE----KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGE 200
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGH 270
+V+ E LR F +FG+ + + D + GKS+GF Y+ E A KA+EE K G
Sbjct: 201 EVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 259
Query: 271 QL---QCQKAAE 279
+ + QK E
Sbjct: 260 SIFVGRAQKKVE 271
Score = 130 (50.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 43/167 (25%), Positives = 78/167 (46%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+++ G + E+L F G+ K++ D +GK+KGF F+ ++ + A KA++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVE-- 249
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQG------ER-------KIYVSNVPRDVEK 215
++N + S + VG V+ Q + ER +Y+ N+ ++
Sbjct: 250 --EMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
EKLR F FG I + + + G+S+GF + + E A KA+ E
Sbjct: 308 EKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 352
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 181 (68.8 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 37/95 (38%), Positives = 56/95 (58%)
Query: 95 HILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
H L + D + K+FV GL W+T E+L F GEI E ++ DK TG++KG+ F+
Sbjct: 12 HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGP 189
F+ +AA +A +P ++ R A+C LAS+G P
Sbjct: 72 FRDPEAARRACADPTPIIDGRRANCNLASLGRPRP 106
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + + E LR FE++GEI + D TG+S+G+ ++ E AR+A +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + +G + C A+ G+ R
Sbjct: 85 PTPIIDGRRANCNLASLGRPR 105
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 178 (67.7 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 49/171 (28%), Positives = 83/171 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F GL ++TT ESL S F G + +C ++ D T +++GF F+ + A V+ +
Sbjct: 21 RKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY----APVEEV- 75
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
RK + R +L ++ + A +KI+V + D E+ LR + E++G
Sbjct: 76 --DRKDHTRWME-ELWNLRAVSREDSQTPGAHLTVKKIFVGGIKEDTEEHHLRDYSEQYG 132
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK GFA + + K + + GH + +KA
Sbjct: 133 KIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 183
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 186 (70.5 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 45/174 (25%), Positives = 92/174 (52%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
+++V + ++ ++++ AF G I+ + D VT K KGFAF+ ++ +AA AL+
Sbjct: 22 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 81
Query: 167 -NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
N + + +++G P + + A+ +IYV++V +D+ + ++ FE F
Sbjct: 82 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 141
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE--GHQLQCQKA 277
G+I++ + D TTGK +G+ Y+ + ++ A+ +F+ G L+ KA
Sbjct: 142 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 194
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 178 (67.7 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 46/183 (25%), Positives = 84/183 (45%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
Q K+F+ G+ WDT + L F GE+ + ++ +K TG+ +GF F+ F A + +
Sbjct: 5 QGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD-PAVIDRV 63
Query: 166 KNPQRKVNNRMASCQLA----SVGPTG-PGVK------EQGAAAQGERKIYVSNVPRDVE 214
+ ++NR + A P G G + GA + +KI+V +P +
Sbjct: 64 LQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVR-TKKIFVGGLPPALT 122
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274
++ R +FE +G + I D TT + RGF + + + L + G Q++
Sbjct: 123 SDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEV 182
Query: 275 QKA 277
++A
Sbjct: 183 KRA 185
Score = 46 (21.3 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 400 PNAPQSKSQGTGG-GSFPGY 418
P +G+GG G FPGY
Sbjct: 192 PGIASGGGRGSGGAGGFPGY 211
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 188 (71.2 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 48/182 (26%), Positives = 92/182 (50%)
Query: 98 ETADRDVSQR--KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
E + D+S+ K+F+ GL WDTT+++L FG G + + K++ D TG+++GF F+ F
Sbjct: 148 ERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
+ + ++V + Q ++ ++ + A P EQ KI+V + DV
Sbjct: 208 E-KPSSVDEVVKTQHILDGKVIDPKRAI--PRD----EQDKTG----KIFVGGIGPDVRP 256
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
++ FF ++G I + D TG+SRGF Y + + + + F+ +++ +
Sbjct: 257 KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIK 316
Query: 276 KA 277
+A
Sbjct: 317 RA 318
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 180 (68.4 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 56/166 (33%), Positives = 82/166 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
IFV L +D T E L AF G + + K+ D G +KGF FI F+T +AA KA +
Sbjct: 75 IFVRNLVFDATNEHLAEAFSQYGNVVDAKVARD-ARGLSKGFGFIYFETPEAAQKACE-- 131
Query: 169 QRKVNNRMASCQLASVGP----TGPGVKEQGAAAQGER----KIYVSNVPRDVEKEKLRG 220
+ NN + +V P + PG ++ A Q ER +Y+ N+P + L
Sbjct: 132 --EANNTFWHGRRINVAPRIKASKPGNRD--AMNQEERTPTSSLYIGNIPYESTDAALNN 187
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKM 266
F+ ++ I D +TG RGFA +K VE A KA+E+ + M
Sbjct: 188 LFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEKVKLM 233
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 189 (71.6 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 54/171 (31%), Positives = 90/171 (52%)
Query: 100 ADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
+ RD S RK +F+ L ++L F G I CK+V D+ G +KG+AF+
Sbjct: 88 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 145
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVK---EQGAAAQGERKIYVSNVPR 211
F+T+ AA +A++ K+N + + + VG + E GA A+ +Y+ N
Sbjct: 146 FETQDAADRAIE----KMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGD 201
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
D++ ++L+ F+++G+ + + D TGKSRGF Y+ E A KA+EE
Sbjct: 202 DMDDQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHEDANKAVEE 251
Score = 125 (49.1 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 40/163 (24%), Positives = 74/163 (45%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+++ G D + L F G+ K++ D TGK++GF F+ ++ + A KA++
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 169 Q-RKVNNRMASCQLASVGPTGPG-VKEQGAAAQGER-------KIYVSNVPRDVEKEKLR 219
++N + A +K + + ER +Y+ N+ ++ EKLR
Sbjct: 253 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 312
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
F FG I + + + G+S+GF + + E A KA+ E
Sbjct: 313 KEFSPFGSITSAKVMLE--EGRSKGFGFVCFSSPEEATKAVTE 353
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 185 (70.2 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 51/167 (30%), Positives = 90/167 (53%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVT-GKAKGFAFIVF 155
+E+ + + S+ + V+ L + TQE L S FG GEIE CKLV DK+T G++ G+ F+ +
Sbjct: 56 VESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNY 115
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
K A KA+ N + + + +++ P+ +++ +YVS +P+ + +
Sbjct: 116 IDPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDAN--------LYVSGLPKTMTQ 166
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY-KTVEGARKALE 261
++L F ++G I T I D TG SRG + K +E A +A++
Sbjct: 167 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE-AEEAIK 212
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 171 (65.3 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 39/115 (33%), Positives = 65/115 (56%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ T +D + KIFV GL + TT SL F G+IEE ++ D+ TGK++G+ F+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
R AA +A K+P ++ R A+ LA +G P + + G A G ++++ + + R
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRIMQPGFAF-GVQQLHPALIQR 113
Score = 110 (43.8 bits), Expect = 0.00076, P = 0.00076
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FG+IE + D TGKSRG+ A +A ++
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 72 PNPIIDGRKANVNLAYLG 89
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 171 (65.3 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 39/115 (33%), Positives = 65/115 (56%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ T +D + KIFV GL + TT SL F G+IEE ++ D+ TGK++G+ F+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
R AA +A K+P ++ R A+ LA +G P + + G A G ++++ + + R
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRIMQPGFAF-GVQQLHPALIQR 113
Score = 110 (43.8 bits), Expect = 0.00076, P = 0.00076
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FG+IE + D TGKSRG+ A +A ++
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 72 PNPIIDGRKANVNLAYLG 89
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 186 (70.5 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 48/183 (26%), Positives = 85/183 (46%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT +E L FG G++ E ++ D+ TG+A+GF FIVF A + + +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 168 PQ----RKVNNRMA----SCQLAS--VGPT---GPGVKEQGAAAQGERKIYVSNVPRDVE 214
R V + A Q+ P P G A+ +KI+V +P +
Sbjct: 76 KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGAR-TKKIFVGGLPSSIT 134
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274
+ + + +F++FG I + +D T + RGF + + E L + G ++
Sbjct: 135 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEV 194
Query: 275 QKA 277
++A
Sbjct: 195 KRA 197
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 184 (69.8 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 41/157 (26%), Positives = 80/157 (50%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+RK+ V G+ WD + L G++E+C ++ D+ TG+++GF ++ F + + A AL
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
K + + NR+ ++A+ P +E A+ +I+V+ +P V + R FER+
Sbjct: 62 KG-EHFLGNRILEVKVAT--PK----EEMRQPAKKVTRIFVARIPSSVSESDFRSHFERY 114
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
GEI + D + + RG + + + +E+
Sbjct: 115 GEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Score = 117 (46.2 bits), Expect = 0.00033, P = 0.00033
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
ERK+ V +P D++ + L+ + +FG++E + D +TG+SRGF + + E A+ AL
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 261 EEPQKMFEGHQLQCQKAAEGK 281
+ F G+++ K A K
Sbjct: 62 KGEH--FLGNRILEVKVATPK 80
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 189 (71.6 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 45/175 (25%), Positives = 82/175 (46%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 199 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 258
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 259 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 311
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 312 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 366
Score = 39 (18.8 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 16/67 (23%), Positives = 22/67 (32%)
Query: 359 AGALHQGAIPASNVGAMAGSSVLGSFGPXXXXX---XXXXXHVYPNAPQSKSQGTGGGSF 415
AGA H A A G MAG+ + + + N S QG +
Sbjct: 569 AGA-HSLAAAAQQAGLMAGNPLNAAAAAAAAAANPAAAYSNYALANVDMSSFQGVDWSTM 627
Query: 416 PGYTSYM 422
G Y+
Sbjct: 628 YGMGMYV 634
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 179 (68.1 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 37/108 (34%), Positives = 57/108 (52%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T + + F GEI E ++ DK TGK+KG+ F+ F+ +A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVP 210
+A+ +P ++ R A+C +AS G P +G G Y S P
Sbjct: 73 RAVADPNPVIDGRKANCNIASFGRPRPS-PPRGRGQTGSPSQYQSGGP 119
Score = 130 (50.8 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + +++R +FE+FGEI I D TGKS+G+ ++ + A +A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + +G + C A+ G+ R
Sbjct: 78 PNPVIDGRKANCNIASFGRPR 98
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 164 (62.8 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 36/130 (27%), Positives = 66/130 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A P + Q +KI+V + + E ++ +FE+FG+
Sbjct: 78 PHHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 131
Query: 228 IETGPIGFDI 237
+ G G +
Sbjct: 132 VSAGSPGLSL 141
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 187 (70.9 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 59/193 (30%), Positives = 95/193 (49%)
Query: 100 ADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
+ RD S RK IFV L ++L F G I CK+V D+ G +KG+ F+
Sbjct: 87 SQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE-NG-SKGYGFVH 144
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVG---PTGPGVKEQGAAAQGERKIYVSNVPR 211
F+T++ A +A++ K+N + + VG E GA A+ +Y+ N+
Sbjct: 145 FETQEEAERAIE----KMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGE 200
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGH 270
D++ E+L+ F RFG + + D +GKS+GF ++ E ARKA++E K G
Sbjct: 201 DMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGK 259
Query: 271 QLQCQKAAEGKNR 283
Q+ +A + R
Sbjct: 260 QIYVGRAQKKVER 272
Score = 120 (47.3 bits), Expect = 0.00034, P = 0.00034
Identities = 43/171 (25%), Positives = 74/171 (43%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ +D S ++V L D T+ L F +G I ++ D+ T ++ G+A + F+
Sbjct: 1 MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQ 60
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ A +AL V + S P +++ G I+V N+ R ++ +
Sbjct: 61 QLEDAERALDTMNFDVIKGKPVRIMWS--QRDPSLRKSGVG-----NIFVKNLDRSIDSK 113
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMF 267
L F FG I + + D K GF F +T E A +A+E+ MF
Sbjct: 114 TLYDTFSAFGNILSCKVVCDENGSKGYGFVHF--ETQEEAERAIEKMNGMF 162
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 182 (69.1 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 49/176 (27%), Positives = 85/176 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL + TT E+L + F G I + ++ D T +++GF FI + +A K
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ K++ R+ + A P + A A +K++V + D +++ +R +F+ FG
Sbjct: 91 SRPHKIDGRVVEPKRAV--PR-QDIDSPNAGAT-VKKLFVGALKDDHDEQSIRDYFQHFG 146
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
I I D TGK RGFA + + K + + Q G + +KA +N
Sbjct: 147 NIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQN 202
Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+++ + + +K+FV L D ++S+ F G I + +VIDK TGK +GFAF+ F
Sbjct: 112 IDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFD 171
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLA 182
K + Q ++N +M + A
Sbjct: 172 DYDPVDKVVLQKQHQLNGKMVDVKKA 197
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 171 (65.3 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 41/122 (33%), Positives = 67/122 (54%)
Query: 90 PLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKG 149
PL + + +D + KIFV GL + TT SL F G G+IEE ++ D+ TGK++G
Sbjct: 17 PLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRG 76
Query: 150 FAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNV 209
+ F+ R AA +A K+P ++ R A+ LA +G P + G A G ++++ + +
Sbjct: 77 YGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRSLQTGFAI-GVQQLHPTLI 134
Query: 210 PR 211
R
Sbjct: 135 QR 136
Score = 111 (44.1 bits), Expect = 0.00061, P = 0.00061
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FG+IE + D TGKSRG+ A +A ++
Sbjct: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 95 PNPIIDGRKANVNLAYLG 112
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 177 (67.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 51/169 (30%), Positives = 86/169 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C + D +++GF F+ + T V+ +K
Sbjct: 14 RKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYAT----VEEVK 69
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ V+ R+ + A + + GA +K++V + D E+ LR +FE++G
Sbjct: 70 G-RPHVDERVVEPKWAI---SREDSQRPGAHLP-VKKVFVGGIKEDTEEHHLRDYFEQYG 124
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
IE I D +GK RGFA ++ + K + QK G+ L C+
Sbjct: 125 RIEVIEIMTDQGSGK-RGFAFILFDDHDSIDKIVI--QKYHTGNGLNCE 170
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 187 (70.9 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 52/168 (30%), Positives = 83/168 (49%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
+ A R Q +F+ L ++L F G I CK+ D+ G +KG+ F+ ++T
Sbjct: 121 DPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYET 179
Query: 158 RKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERK---IYVSNVPRDVE 214
+AA A+K+ VN + + + VG Q + + IY+ N+ +VE
Sbjct: 180 AEAANNAIKH----VNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVE 235
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
E+ R FE+FGEI + + D + GKSRGF + T E A+ A+EE
Sbjct: 236 DEEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVEE 282
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 186 (70.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 55/171 (32%), Positives = 89/171 (52%)
Query: 100 ADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
+ RD S RK +F+ L ++L F G I CK+V D+ G +KG+AF+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVK---EQGAAAQGERKIYVSNVPR 211
F+T++AA KA++ K+N + + + VG + E GA A+ +Y+ N
Sbjct: 145 FETQEAADKAIE----KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGE 200
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+V+ E L+ F +FG+ + + D +GKS+GF Y+ E A KA+EE
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEE 250
Score = 136 (52.9 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 44/167 (26%), Positives = 79/167 (47%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+++ G + ESL F G+ K++ D +GK+KGF F+ ++ + A KA++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVE-- 249
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQG------ER-------KIYVSNVPRDVEK 215
++N + S ++ VG V+ Q + ER +Y+ N+ ++
Sbjct: 250 --EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
EKLR F FG I + + + G+S+GF + + E A KA+ E
Sbjct: 308 EKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 352
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 186 (70.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 55/171 (32%), Positives = 89/171 (52%)
Query: 100 ADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
+ RD S RK +F+ L ++L F G I CK+V D+ G +KG+AF+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVK---EQGAAAQGERKIYVSNVPR 211
F+T++AA KA++ K+N + + + VG + E GA A+ +Y+ N
Sbjct: 145 FETQEAADKAIE----KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGE 200
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+V+ E L+ F +FG+ + + D +GKS+GF Y+ E A KA+EE
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEE 250
Score = 133 (51.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 43/167 (25%), Positives = 79/167 (47%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+++ G + E+L F G+ K++ D +GK+KGF F+ ++ + A KA++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVE-- 249
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQG------ER-------KIYVSNVPRDVEK 215
++N + S ++ VG V+ Q + ER +Y+ N+ ++
Sbjct: 250 --EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
EKLR F FG I + + + G+S+GF + + E A KA+ E
Sbjct: 308 EKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 352
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 182 (69.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 50/185 (27%), Positives = 91/185 (49%)
Query: 102 RDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA 160
R+ Q RK+F+ GL ++TT ESL + F G + +C ++ D T +++GF F+ + +
Sbjct: 32 REPEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGE 91
Query: 161 AVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
A+ KV+ R + A + + GA + +K++V + D ++E LR
Sbjct: 92 VDAAMDARPHKVDGRAVEPKRAV---SREDSSKPGAHST-VKKMFVGGIKEDTDEEHLRE 147
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA-- 278
+F +FG+I+ I + + K RGFA + + + + + GH + +KA
Sbjct: 148 YFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKALSR 207
Query: 279 EGKNR 283
E NR
Sbjct: 208 EEMNR 212
Score = 38 (18.4 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 399 YPNAPQSKSQGTGGGSFPG 417
Y N + G GGG+F G
Sbjct: 313 YDNYNNNGGGGGGGGNFGG 331
Score = 37 (18.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 411 GGGSFPGYTSYMWYG 425
GGG + G Y YG
Sbjct: 256 GGGGYGGGDGYNGYG 270
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 163 (62.4 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+ KI+V GL W T E L+S F GEI K+V D T ++KGF F+ F+ ++A +A
Sbjct: 8 ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
Query: 166 KNPQRKVNNRMASCQLASVG 185
+NP ++ R +C+LA +G
Sbjct: 68 ENPNHTIDGRTVNCKLAYLG 87
Score = 139 (54.0 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
E KIYV+ +P E L +FERFGEI + D T +S+GF ++ VE A +A
Sbjct: 8 ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
Query: 261 EEPQKMFEGHQLQCQKAAEG 280
E P +G + C+ A G
Sbjct: 68 ENPNHTIDGRTVNCKLAYLG 87
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 163 (62.4 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + KI+V GL W T +E L++ F GEI +V D+ T +++G+ F+ FK ++A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 163 KALKNPQRKVNNRMASCQLASVG 185
+A K+P + R+ +C+LA VG
Sbjct: 69 RACKDPNPTIEGRITNCKLAFVG 91
Score = 130 (50.8 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KIYV +P KE L FF+RFGEI + D T +S+G+ +K E A +A ++
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 263 PQKMFEGHQLQCQKAAEG 280
P EG C+ A G
Sbjct: 74 PNPTIEGRITNCKLAFVG 91
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 163 (62.4 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 34/89 (38%), Positives = 52/89 (58%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ T +D + KIFV GL + TT SL F G+IEE ++ D+ TGK++G+ F+
Sbjct: 1 MHTVQKDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVG 185
R AA +A K+P ++ R A+ LA +G
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLG 89
Score = 111 (44.1 bits), Expect = 0.00044, P = 0.00044
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FG+IE + D TGKSRG+ A +A ++
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 72 PNPIIDGRKANVNLAYLG 89
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 186 (70.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 55/171 (32%), Positives = 89/171 (52%)
Query: 100 ADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
+ RD S RK +F+ L ++L F G I CK+V D+ G +KG+AF+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVK---EQGAAAQGERKIYVSNVPR 211
F+T++AA KA++ K+N + + + VG + E GA A+ +Y+ N
Sbjct: 145 FETQEAADKAIE----KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGE 200
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+V+ E L+ F +FG+ + + D +GKS+GF Y+ E A KA+EE
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEE 250
Score = 130 (50.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 42/167 (25%), Positives = 79/167 (47%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+++ G + E+L F G+ K++ D +GK+KGF F+ ++ + A KA++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVE-- 249
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQG------ER-------KIYVSNVPRDVEK 215
++N + + ++ VG V+ Q + ER +Y+ N+ ++
Sbjct: 250 --EMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
EKLR F FG I + + + G+S+GF + + E A KA+ E
Sbjct: 308 EKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 352
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 174 (66.3 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ T +D + KIFV GL + TT SL F GEIEE ++ D+ TGK++G+ F+
Sbjct: 19 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA 78
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
R AA +A K+P ++ R A+ LA +G P + + G A G ++++ + + R
Sbjct: 79 DRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRIMQPGFAF-GVQQLHPALIQR 131
Score = 113 (44.8 bits), Expect = 0.00042, P = 0.00042
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FGEIE + D TGKSRG+ A +A ++
Sbjct: 30 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 89
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 90 PNPIIDGRKANVNLAYLG 107
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 172 (65.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 39/115 (33%), Positives = 65/115 (56%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ T +D + KIFV GL + TT SL F G+IEE ++ D+ TGK++G+ F+
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
R AA +A K+P ++ R A+ LA +G P + + G A G ++++ + + R
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAK-PRIMQPGFAF-GVQQLHPALIQR 113
Score = 111 (44.1 bits), Expect = 0.00065, P = 0.00065
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P LR +FE FG+IE + D TGKSRG+ A +A ++
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 263 PQKMFEGHQLQCQKAAEG 280
P + +G + A G
Sbjct: 72 PNPIIDGRKANVNLAYLG 89
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 186 (70.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 55/171 (32%), Positives = 89/171 (52%)
Query: 100 ADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
+ RD S RK +F+ L ++L F G I CK+V D+ G +KG+AF+
Sbjct: 127 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 184
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVK---EQGAAAQGERKIYVSNVPR 211
F+T++AA KA++ K+N + + + VG + E GA A+ +Y+ N
Sbjct: 185 FETQEAADKAIE----KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGE 240
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+V+ E L+ F +FG+ + + D +GKS+GF Y+ E A KA+EE
Sbjct: 241 EVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEE 290
Score = 136 (52.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 44/167 (26%), Positives = 79/167 (47%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+++ G + ESL F G+ K++ D +GK+KGF F+ ++ + A KA++
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVE-- 289
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQG------ER-------KIYVSNVPRDVEK 215
++N + S ++ VG V+ Q + ER +Y+ N+ ++
Sbjct: 290 --EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 347
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
EKLR F FG I + + + G+S+GF + + E A KA+ E
Sbjct: 348 EKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 392
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 185 (70.2 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 55/171 (32%), Positives = 88/171 (51%)
Query: 100 ADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
+ RD S RK +F+ L ++L F G I CK+V D+ G +KG+AF+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVK---EQGAAAQGERKIYVSNVPR 211
F+T++AA KA++ K+N + + + VG + E GA A+ +Y+ N
Sbjct: 145 FETQEAADKAIE----KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGE 200
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+V+ E L+ F +FG+ + + D GKS+GF Y+ E A KA+EE
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEE 250
Score = 136 (52.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 44/167 (26%), Positives = 78/167 (46%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+++ G + ESL F G+ K++ D GK+KGF F+ ++ + A KA++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVE-- 249
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQG------ER-------KIYVSNVPRDVEK 215
++N + S ++ VG V+ Q + ER +Y+ N+ ++
Sbjct: 250 --EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
EKLR F FG I + + + G+S+GF + + E A KA+ E
Sbjct: 308 EKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 352
WARNING: HSPs involving 582 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 446 331 0.00090 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 832
No. of states in DFA: 599 (64 KB)
Total size of DFA: 200 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.79u 0.10s 24.89t Elapsed: 00:00:01
Total cpu time: 24.83u 0.10s 24.93t Elapsed: 00:00:01
Start: Fri May 10 07:34:36 2013 End: Fri May 10 07:34:37 2013
WARNINGS ISSUED: 2