BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013270
(446 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224081210|ref|XP_002306336.1| predicted protein [Populus trichocarpa]
gi|222855785|gb|EEE93332.1| predicted protein [Populus trichocarpa]
Length = 397
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 187/374 (50%), Positives = 233/374 (62%), Gaps = 34/374 (9%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
+S+LLEPY+KDQLIDLI +A K P L+ I + ADRDV+ R +FVHG WDTT++ L+S
Sbjct: 45 LSTLLEPYTKDQLIDLITNSAIKNPSLYSLIHQHADRDVTHRNVFVHGFSWDTTRQDLVS 104
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
AF GEIEEC +VIDK TGKAKG+ F++FK+RKAA+ ALK +R VN+RMASCQLASVG
Sbjct: 105 AFAAFGEIEECNVVIDKATGKAKGYGFVLFKSRKAAISALKETKRMVNDRMASCQLASVG 164
Query: 186 PTGPGVKEQGAAAQ-GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRG 244
+G + G RKI+VSNV +KEKLR FFE+FGEIE GPIGFD TGKSRG
Sbjct: 165 SANAASAAKGKELEGGVRKIFVSNVGMSTDKEKLRAFFEKFGEIENGPIGFDKETGKSRG 224
Query: 245 FAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQ 304
+A+FVYKTVEGA KALEEP K+FEG QL+C A EGKN+T+ N + Q QQ
Sbjct: 225 YALFVYKTVEGAIKALEEPHKIFEGQQLRCSVATEGKNKTNQNVAQGMQQVVQQQPVHQQ 284
Query: 305 PMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGGFLVNPGLINPMVAGALHQ 364
+AAAQNLALFGQHPG +PLY L + G+ M++ + Q
Sbjct: 285 ---------------PQGQFLAAAQNLALFGQHPGFNPLYSALLGSTGVGGGMISPVIGQ 329
Query: 365 GAIPASNVGAMAGSSVLGSFGPGAAQGL------QQQQHVYPNAPQ-----SKSQGTGGG 413
+P + +S +G G G+ L Q QHVY + Q GG
Sbjct: 330 SMVPTA-------TSQVGGLGVGSQSTLEAYRAAQVLQHVYSSTTQIGQTGMGRGQGAGG 382
Query: 414 SFPGYTSYMWYGLL 427
SF GY YMW+ L+
Sbjct: 383 SFTGYPKYMWWELM 396
>gi|225438611|ref|XP_002276585.1| PREDICTED: DAZ-associated protein 1-like [Vitis vinifera]
Length = 396
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 191/383 (49%), Positives = 233/383 (60%), Gaps = 59/383 (15%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + LLEPYSKDQLI I+ AA L I ETADRDVS RKIFVHGLGWDTT+E+L
Sbjct: 49 DKLQKLLEPYSKDQLIGFISDAAASDSSLFQRIRETADRDVSHRKIFVHGLGWDTTRETL 108
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
L+AF G+IE+C +V D+ TGKAKG+ F++FKTR+ AVKALK P +K+NNRM QLAS
Sbjct: 109 LAAFEPYGQIEDCNVVTDRNTGKAKGYGFVLFKTRQGAVKALKQPGKKINNRMTQSQLAS 168
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
+GP+ P + RKIYVSNV DV+ E+LR FF +FGEIETGPIGFD TGKSR
Sbjct: 169 MGPSPPPQSQDTVG----RKIYVSNVQADVDPERLRSFFAKFGEIETGPIGFDTQTGKSR 224
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQ 303
GFA+FVYK E ARKALE+P ++FEGHQL CQKA EGKN+ + Q
Sbjct: 225 GFALFVYKNQESARKALEDPYRIFEGHQLHCQKATEGKNK---------------VPAQP 269
Query: 304 QPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGGFLVNP-------GLINP 356
QP LAA+AA QN L QHP ++ LY G L +P +NP
Sbjct: 270 QPQ---------------LAAVAATQNFML-SQHPTLNTLYSGLLAHPNASMIGAAAVNP 313
Query: 357 MVAGALHQGAIPASNVGAMAGS-SVLGSFGPGAAQGLQQQ-----------QHVYPNAPQ 404
VAGA++ G I +S VG++ GS LG +G G QH YP+
Sbjct: 314 AVAGAMNPGVISSSQVGSVIGSVEGLGGYGTHGVAGFGGTPSVLGPPSLGLQHAYPSTQL 373
Query: 405 SKS-----QGTGGGSFPGYTSYM 422
+S QGTG G+F GY SYM
Sbjct: 374 GQSSVGRVQGTGVGTFGGYPSYM 396
>gi|449462878|ref|XP_004149162.1| PREDICTED: uncharacterized protein LOC101213550 [Cucumis sativus]
Length = 405
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 187/385 (48%), Positives = 245/385 (63%), Gaps = 61/385 (15%)
Query: 69 LLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFG 128
LLEP+SK QLI+LI A K P L I ADRDV+ RKIFVHGLGWDTT+E+L S F
Sbjct: 51 LLEPFSKTQLIELICTTALKDPNLQAQIRAAADRDVTHRKIFVHGLGWDTTRETLTSVFE 110
Query: 129 GSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTG 188
GEIE+C +V+D+ TGKAKG+ FI+FK+R+ A+KALK P++K+NNRM SCQLASVG
Sbjct: 111 SFGEIEDCNVVMDRNTGKAKGYGFILFKSRQGAIKALKEPRKKINNRMTSCQLASVGSVP 170
Query: 189 PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIF 248
P ++ G RKIYV+NV +V+ E+LR FF +FG++E GPIGFD TGKSRG+AIF
Sbjct: 171 PPQSQE----VGPRKIYVANVHHNVDAERLRAFFAKFGDLEMGPIGFDPETGKSRGYAIF 226
Query: 249 VYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQ 308
+Y+T EGARKALEEP K+FEG++L CQ+A+EGKN+ +++ QA + + Q P
Sbjct: 227 IYRTNEGARKALEEPHKVFEGNKLHCQRASEGKNKNQNST-----QAAESLGQNQTP--- 278
Query: 309 GQQQGQGNEQEQVLAAMAAAQNLALFGQHPGM-HPLYGGFLVNPGLINPMVAGALHQGAI 367
V+AAMAAA NL LF QHPG+ HP+YGG+ +P L G L+QG +
Sbjct: 279 ------------VMAAMAAAPNLQLFAQHPGLNHPVYGGY-GSPAL----GGGMLNQGVV 321
Query: 368 PASNVG-------------------------AMAGSSVLGSFGPGAAQGLQQQQHVYPNA 402
P S VG + GSS+LGS+GPG++ L+ H+Y +
Sbjct: 322 PMSQVGLVGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLLGSYGPGSSS-LKGLPHIYSST 380
Query: 403 PQSKS-----QGTGGGSFPGYTSYM 422
K+ Q GGS GYTS++
Sbjct: 381 MLGKTVSESGQAAAGGSLGGYTSHL 405
>gi|449509115|ref|XP_004163497.1| PREDICTED: uncharacterized protein LOC101228639, partial [Cucumis
sativus]
Length = 405
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 187/385 (48%), Positives = 245/385 (63%), Gaps = 61/385 (15%)
Query: 69 LLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFG 128
LLEP+SK QLI+LI A K P L I ADRDV+ RKIFVHGLGWDTT+E+L S F
Sbjct: 51 LLEPFSKTQLIELICTTALKDPNLQAQIRAAADRDVTHRKIFVHGLGWDTTRETLTSVFE 110
Query: 129 GSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTG 188
GEIE+C +V+D+ TGKAKG+ FI+FK+R+ A+KALK P++K+NNRM SCQLASVG
Sbjct: 111 SFGEIEDCNVVMDRNTGKAKGYGFILFKSRQGAIKALKEPRKKINNRMTSCQLASVGSVP 170
Query: 189 PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIF 248
P ++ G RKIYV+NV +V+ E+LR FF +FG++E GPIGFD TGKSRG+AIF
Sbjct: 171 PPQSQE----VGPRKIYVANVHHNVDAERLRAFFAKFGDLEMGPIGFDPETGKSRGYAIF 226
Query: 249 VYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQ 308
+Y+T EGARKALEEP K+FEG++L CQ+A+EGKN+ +++ QA + + Q P
Sbjct: 227 IYRTNEGARKALEEPHKVFEGNKLHCQRASEGKNKNQNST-----QAAESLGQNQTP--- 278
Query: 309 GQQQGQGNEQEQVLAAMAAAQNLALFGQHPGM-HPLYGGFLVNPGLINPMVAGALHQGAI 367
V+AAMAAA NL LF QHPG+ HP+YGG+ +P L G L+QG +
Sbjct: 279 ------------VMAAMAAAPNLQLFAQHPGLNHPVYGGY-GSPAL----GGGMLNQGVV 321
Query: 368 PASNVG-------------------------AMAGSSVLGSFGPGAAQGLQQQQHVYPNA 402
P S VG + GSS+LGS+GPG++ L+ H+Y +
Sbjct: 322 PMSQVGLVGSSVGAGIGLSGYSGGSYGLSQLSAGGSSLLGSYGPGSSS-LKGLPHIYSST 380
Query: 403 PQSKS-----QGTGGGSFPGYTSYM 422
K+ Q GGS GYTS++
Sbjct: 381 MLGKTVSESGQAATGGSLGGYTSHL 405
>gi|296082474|emb|CBI21479.3| unnamed protein product [Vitis vinifera]
Length = 373
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/322 (53%), Positives = 209/322 (64%), Gaps = 42/322 (13%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + LLEPYSKDQLI I+ AA L I ETADRDVS RKIFVHGLGWDTT+E+L
Sbjct: 63 DKLQKLLEPYSKDQLIGFISDAAASDSSLFQRIRETADRDVSHRKIFVHGLGWDTTRETL 122
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
L+AF G+IE+C +V D+ TGKAKG+ F++FKTR+ AVKALK P +K+NNRM QLAS
Sbjct: 123 LAAFEPYGQIEDCNVVTDRNTGKAKGYGFVLFKTRQGAVKALKQPGKKINNRMTQSQLAS 182
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
+GP+ P + RKIYVSNV DV+ E+LR FF +FGEIETGPIGFD TGKSR
Sbjct: 183 MGPSPPPQSQDTVG----RKIYVSNVQADVDPERLRSFFAKFGEIETGPIGFDTQTGKSR 238
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQ 303
GFA+FVYK E ARKALE+P ++FEGHQL CQKA EGKN+ + Q
Sbjct: 239 GFALFVYKNQESARKALEDPYRIFEGHQLHCQKATEGKNK---------------VPAQP 283
Query: 304 QPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGGFLVNP-------GLINP 356
QP LAA+AA QN L QHP ++ LY G L +P +NP
Sbjct: 284 QPQ---------------LAAVAATQNFML-SQHPTLNTLYSGLLAHPNASMIGAAAVNP 327
Query: 357 MVAGALHQGAIPASNVGAMAGS 378
VAGA++ G I +S VG++ GS
Sbjct: 328 AVAGAMNPGVISSSQVGSVIGS 349
>gi|147845244|emb|CAN83373.1| hypothetical protein VITISV_028295 [Vitis vinifera]
Length = 443
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 185/399 (46%), Positives = 226/399 (56%), Gaps = 81/399 (20%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + LLEPYSKDQLI I+ AA L I ETADRDVS RKIFVHGLGWDTT+E+L
Sbjct: 49 DKLQKLLEPYSKDQLIGFISDAAASDSSLFQRIRETADRDVSHRKIFVHGLGWDTTRETL 108
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
L+AF G+IE+C +V D+ TGKAKG+ F++FKTR+ AVKALK P +K+NNRM QLAS
Sbjct: 109 LAAFEPYGQIEDCNVVTDRNTGKAKGYGFVLFKTRQGAVKALKQPGKKINNRMTQSQLAS 168
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
+GP+ P + RKIYVSNV DV+ E+LR FF +FGEIETGPIGFD TGKSR
Sbjct: 169 MGPSPPPQSQDTVG----RKIYVSNVQADVDPERLRSFFAKFGEIETGPIGFDTQTGKSR 224
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQ 303
G +FEGHQL CQKA EGKN+ + Q
Sbjct: 225 G---------------------IFEGHQLHCQKATEGKNK---------------VPAQP 248
Query: 304 QPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGGFLVNP-------GLINP 356
QP LAA+AA QN L QHP ++ LY G L +P +NP
Sbjct: 249 QPQ---------------LAAVAATQNFML-SQHPTLNTLYSGLLAHPNASMIGAAAVNP 292
Query: 357 MVAGALHQGAIPASNVGAMAGS-SVLGSFGPGAAQGLQQQ-----------QHVYPNAPQ 404
VAGA++ G I +S VG++ GS LG +G G QH YP+
Sbjct: 293 AVAGAMNPGVISSSQVGSVIGSVEGLGGYGTHGVAGFGGTPSVLGPPSLGLQHAYPSTQL 352
Query: 405 SKS-----QGTGGGSFPGYTSYMWYGLLSLLDLLFVYIF 438
+S QGTG G+F GY SYMWY LS D L +Y+F
Sbjct: 353 GQSSVGRVQGTGVGTFGGYPSYMWYD-LSQTDSLHIYVF 390
>gi|449461439|ref|XP_004148449.1| PREDICTED: uncharacterized protein LOC101211535 [Cucumis sativus]
gi|449503048|ref|XP_004161816.1| PREDICTED: uncharacterized protein LOC101228786 [Cucumis sativus]
Length = 500
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 128/238 (53%), Positives = 164/238 (68%), Gaps = 9/238 (3%)
Query: 50 SCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKI 109
S SS++ + ++ + E I LLEP++KDQLI+L+ AA K + I AD D S RKI
Sbjct: 110 STSSAAVATTDDDDEPIHKLLEPFTKDQLINLLREAADKHVDVAGRIRMVADADPSHRKI 169
Query: 110 FVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ 169
FVHGLGWDT E+L++ F GEIE+CK V DKV+GK+KG+ FI+FK R A KALK PQ
Sbjct: 170 FVHGLGWDTNAETLINVFKQFGEIEDCKAVCDKVSGKSKGYGFILFKKRSGARKALKEPQ 229
Query: 170 RKVNNRMASCQLASVGPT-------GPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
+K+ NRM +CQLASVGP P V A+ +RKIYVSNV DV+ +KL FF
Sbjct: 230 KKIGNRMTACQLASVGPVPTTNAVAAPQVPP--ASEYTQRKIYVSNVGADVDPQKLLAFF 287
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
+FGE++ GP+G D TGK +GF +FVYK++E A+KALEEP K FEGH L CQKA +G
Sbjct: 288 SQFGEVDEGPLGLDKMTGKPKGFCLFVYKSIESAKKALEEPHKNFEGHVLHCQKAIDG 345
>gi|225439119|ref|XP_002270568.1| PREDICTED: uncharacterized protein LOC100243393 [Vitis vinifera]
Length = 463
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/246 (51%), Positives = 167/246 (67%), Gaps = 12/246 (4%)
Query: 44 AAATSSSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRD 103
AA S+S S+ + + E E I +LEP+SKDQLI+L+ AA K + + + AD D
Sbjct: 58 AAKKSASTSAVDDDDDE---EPIQKILEPFSKDQLINLLREAAEKHADVAERLRRVADED 114
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
RKIFVHGLGWDT E+L+S F GEIE+C+ V DK++GK+KG+ FI+FKTR A K
Sbjct: 115 PVHRKIFVHGLGWDTNAETLISVFKDYGEIEDCRAVCDKLSGKSKGYGFILFKTRSGARK 174
Query: 164 ALKNPQRKVNNRMASCQLASVGPT-GPGVKE--------QGAAAQGERKIYVSNVPRDVE 214
ALK PQ+K+ NRM +CQLAS+GP P V + Q + +RKIYVSNV +++
Sbjct: 175 ALKQPQKKIGNRMTACQLASIGPVPSPAVGQAAMSVSAAQSVSEYTQRKIYVSNVGAELD 234
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274
+KL FF ++GEIE GP+G D TGK +GF +FVYKT EGA+KAL+EP K F+GH L C
Sbjct: 235 PQKLLVFFSKYGEIEEGPLGLDKQTGKPKGFCLFVYKTAEGAKKALDEPHKNFDGHILHC 294
Query: 275 QKAAEG 280
QKA +G
Sbjct: 295 QKAIDG 300
>gi|147807511|emb|CAN72884.1| hypothetical protein VITISV_028589 [Vitis vinifera]
Length = 463
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/246 (51%), Positives = 167/246 (67%), Gaps = 12/246 (4%)
Query: 44 AAATSSSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRD 103
AA S+S S+ + + E E I +LEP+SKDQLI+L+ AA K + + + AD D
Sbjct: 58 AAKKSASTSAVDDDDDE---EPIQKILEPFSKDQLINLLREAAEKHADVAERLRRVADED 114
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
RKIFVHGLGWDT E+L+S F GEIE+C+ V DK++GK+KG+ FI+FKTR A K
Sbjct: 115 PVHRKIFVHGLGWDTNAETLISVFKDYGEIEDCRAVCDKLSGKSKGYGFILFKTRSGARK 174
Query: 164 ALKNPQRKVNNRMASCQLASVGPT-GPGVKE--------QGAAAQGERKIYVSNVPRDVE 214
ALK PQ+K+ NRM +CQLAS+GP P V + Q + +RKIYVSNV +++
Sbjct: 175 ALKQPQKKIGNRMTACQLASIGPVPSPAVGQAAMSVSAAQSVSEYTQRKIYVSNVGAELD 234
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274
+KL FF ++GEIE GP+G D TGK +GF +FVYKT EGA+KAL+EP K F+GH L C
Sbjct: 235 PQKLLVFFSKYGEIEEGPLGLDKQTGKPKGFCLFVYKTAEGAKKALDEPHKNFDGHILHC 294
Query: 275 QKAAEG 280
QKA +G
Sbjct: 295 QKAIDG 300
>gi|359479205|ref|XP_003632233.1| PREDICTED: uncharacterized protein LOC100258161 isoform 1 [Vitis
vinifera]
gi|359479207|ref|XP_003632234.1| PREDICTED: uncharacterized protein LOC100258161 isoform 2 [Vitis
vinifera]
gi|147853236|emb|CAN80681.1| hypothetical protein VITISV_037734 [Vitis vinifera]
Length = 478
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 155/216 (71%), Gaps = 1/216 (0%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
I LLEP+SK+QL+ L+ A K P D + AD D + RKIFVHGLGWDTT E+L S
Sbjct: 116 IEKLLEPFSKEQLLALLREAVEKYPDFVDSVRRLADADPAHRKIFVHGLGWDTTAETLTS 175
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
FG GEIE+CK V DK++GK+KG+AFI+FK R A KALK PQ+K+ NRM SCQLAS G
Sbjct: 176 VFGKYGEIEDCKAVSDKISGKSKGYAFILFKHRSGARKALKQPQKKIGNRMTSCQLASAG 235
Query: 186 PTGPGVKEQGAAAQ-GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRG 244
P ++ +RKI+VSNV +++ +KL FF +FGEIE GP+G D +TGK +G
Sbjct: 236 PVPAPPPVVPPVSEYTQRKIFVSNVSSEIDPQKLLEFFAKFGEIEEGPLGLDKSTGKPKG 295
Query: 245 FAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
FA+FVYK++E +R+ALEEP K+FEGH L CQKA +G
Sbjct: 296 FALFVYKSIESSRRALEEPHKIFEGHTLHCQKAIDG 331
>gi|84468340|dbj|BAE71253.1| hypothetical protein [Trifolium pratense]
Length = 414
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 123/225 (54%), Positives = 157/225 (69%), Gaps = 7/225 (3%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
+ E I L+EP++K+Q+ L+ AA+K + D I + AD D S RKIFVHGLGWDTT
Sbjct: 14 DDEPIQKLIEPFTKEQIASLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSA 73
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
+L++AF GEIE+CK V DKV+GK+KG+ FI+FK R A ALK PQ+K+ NRM +CQL
Sbjct: 74 TLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQL 133
Query: 182 ASVGPTG------PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGF 235
AS+GP P + QG+ +RKIYVSNV D++ KL GFF RFGEIE GP+G
Sbjct: 134 ASIGPVQQTPQPVPQLVPQGSEYT-QRKIYVSNVGPDLDGSKLFGFFSRFGEIEEGPLGL 192
Query: 236 DITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
D TGK +GF +FVYK+ E AR+ALEEP K FEGH L CQ+A +G
Sbjct: 193 DKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQRAIDG 237
>gi|296083996|emb|CBI24384.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/213 (56%), Positives = 154/213 (72%), Gaps = 1/213 (0%)
Query: 69 LLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFG 128
LLEP+SK+QL+ L+ A K P D + AD D + RKIFVHGLGWDTT E+L S FG
Sbjct: 134 LLEPFSKEQLLALLREAVEKYPDFVDSVRRLADADPAHRKIFVHGLGWDTTAETLTSVFG 193
Query: 129 GSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTG 188
GEIE+CK V DK++GK+KG+AFI+FK R A KALK PQ+K+ NRM SCQLAS GP
Sbjct: 194 KYGEIEDCKAVSDKISGKSKGYAFILFKHRSGARKALKQPQKKIGNRMTSCQLASAGPVP 253
Query: 189 PGVKEQGAAAQ-GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAI 247
++ +RKI+VSNV +++ +KL FF +FGEIE GP+G D +TGK +GFA+
Sbjct: 254 APPPVVPPVSEYTQRKIFVSNVSSEIDPQKLLEFFAKFGEIEEGPLGLDKSTGKPKGFAL 313
Query: 248 FVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
FVYK++E +R+ALEEP K+FEGH L CQKA +G
Sbjct: 314 FVYKSIESSRRALEEPHKIFEGHTLHCQKAIDG 346
>gi|224086681|ref|XP_002307930.1| predicted protein [Populus trichocarpa]
gi|222853906|gb|EEE91453.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/237 (54%), Positives = 157/237 (66%), Gaps = 20/237 (8%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
I LLEP+ KDQLI+L+ AA + D I + AD+D RKIFVHGLGWDT E+L++
Sbjct: 89 IEKLLEPFGKDQLINLLREAADGHRDVADKIRQVADQDPVHRKIFVHGLGWDTNAEALIN 148
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASV- 184
AF GEIE+CK V DKVTGK+KG+ FI+FK R A ALK PQ+K+ NRMA+CQLAS
Sbjct: 149 AFKPYGEIEDCKAVCDKVTGKSKGYGFILFKKRSGARNALKEPQKKIGNRMAACQLASTG 208
Query: 185 -------GPTGPGVKEQGAAAQGE--------RKIYVSNVPRDVEKEKLRGFFERFGEIE 229
GP+GP AAAQ + RKIYVSNV +++ +KL FF FGEIE
Sbjct: 209 PVPQSSAGPSGP----IAAAAQTQQPVSEYTLRKIYVSNVGANLDPQKLMSFFSEFGEIE 264
Query: 230 TGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
GP+G D TGK +GF +FVYKTVE A+KALEEP K FEGH L CQKA +G S
Sbjct: 265 EGPLGLDKATGKPKGFCLFVYKTVESAKKALEEPHKSFEGHILHCQKAVDGPKHAKS 321
>gi|87162862|gb|ABD28657.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 490
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 123/231 (53%), Positives = 156/231 (67%), Gaps = 8/231 (3%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
+ E I LLEP+SK+Q+ L+ AA+K + D I + AD D S RKIFVHGLGWDTT
Sbjct: 82 DDEPIQKLLEPFSKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSA 141
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
+L++AF GEIE+CK V DKV+GK+KG+ FI+FK R A ALK PQ+K+ NRM +CQL
Sbjct: 142 TLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQL 201
Query: 182 ASVGPT--------GPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPI 233
AS+GP P + +RKIY+SNV +++ +KL GFF RFGEIE GP+
Sbjct: 202 ASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPL 261
Query: 234 GFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284
G D TGK +GF +FVYK+ E AR+ALEEP K FEGH L CQKA +G T
Sbjct: 262 GLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAIDGPKPT 312
>gi|82621124|gb|ABB86250.1| RNA-binding protein AKIP1-like [Solanum tuberosum]
Length = 498
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 150/216 (69%), Gaps = 3/216 (1%)
Query: 68 SLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAF 127
+LLEP++KDQL LI A K P ++I + AD+D + RKIFVHGLGWDTT E+L S F
Sbjct: 120 NLLEPFTKDQLTALIKEALAKYPDFKENIQKLADKDPAHRKIFVHGLGWDTTAETLTSVF 179
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPT 187
GEIE+CK V DKV+GK+KG+ FI+FK R A KALK PQ+K+ RM SCQLAS GP
Sbjct: 180 ATYGEIEDCKAVTDKVSGKSKGYGFILFKHRSGARKALKEPQKKIGTRMTSCQLASAGPV 239
Query: 188 GPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRG 244
E RKI+VSNV D+E +KL +F +FGE+E GP+G D +GK +G
Sbjct: 240 PAPPPTTATPPVSEYTQRKIFVSNVAADLEPQKLLEYFSKFGEVEEGPLGLDKQSGKPKG 299
Query: 245 FAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
F +FVYKTVEGARKALEEP K FEGH L CQKA +G
Sbjct: 300 FCLFVYKTVEGARKALEEPHKTFEGHTLHCQKAIDG 335
>gi|357509097|ref|XP_003624837.1| RNA-binding protein [Medicago truncatula]
gi|355499852|gb|AES81055.1| RNA-binding protein [Medicago truncatula]
Length = 499
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 123/231 (53%), Positives = 156/231 (67%), Gaps = 8/231 (3%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
+ E I LLEP+SK+Q+ L+ AA+K + D I + AD D S RKIFVHGLGWDTT
Sbjct: 82 DDEPIQKLLEPFSKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSA 141
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
+L++AF GEIE+CK V DKV+GK+KG+ FI+FK R A ALK PQ+K+ NRM +CQL
Sbjct: 142 TLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQL 201
Query: 182 ASVGPT--------GPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPI 233
AS+GP P + +RKIY+SNV +++ +KL GFF RFGEIE GP+
Sbjct: 202 ASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPL 261
Query: 234 GFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284
G D TGK +GF +FVYK+ E AR+ALEEP K FEGH L CQKA +G T
Sbjct: 262 GLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAIDGPKPT 312
>gi|255577238|ref|XP_002529501.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
gi|223531017|gb|EEF32870.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
Length = 462
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 157/236 (66%), Gaps = 12/236 (5%)
Query: 57 SESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGW 116
+ E + + I LLEP+ K+QLI+L+ AA + DHI + AD D RKIFVHGLGW
Sbjct: 79 ANDEDDDDPIEKLLEPFGKEQLINLLREAADTHRDVADHIRKIADADPVHRKIFVHGLGW 138
Query: 117 DTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRM 176
DT+ E+L +AF GEIE+CK V DKV+GK+KG+ FI+FK R A KAL+ PQ+K+ NRM
Sbjct: 139 DTSAETLTNAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKKRSGARKALQEPQKKIGNRM 198
Query: 177 ASCQLASVGP------------TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
+CQLAS+GP T + Q + RKIYVSNV D++ ++L FF +
Sbjct: 199 TACQLASIGPVPVGQAAASAVTTSHHPQHQQVSDYTRRKIYVSNVAADLDPKELTNFFSK 258
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
FGEIE GP+G D TGK +GF +FVYK+ E A++ALEEP K FEGH L CQKA +G
Sbjct: 259 FGEIEEGPLGLDKLTGKPKGFCLFVYKSAESAKRALEEPHKSFEGHMLHCQKAIDG 314
>gi|255562178|ref|XP_002522097.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
gi|223538696|gb|EEF40297.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
Length = 478
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 119/223 (53%), Positives = 157/223 (70%), Gaps = 8/223 (3%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
I +LLEP+ K+QL++L+ A+ K + D I + AD D + RKIFVHGLGWD+T E+L +
Sbjct: 94 IENLLEPFGKEQLVNLLKEASDKHRDVADRIRKIADADPAHRKIFVHGLGWDSTAETLTN 153
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
AF GEIE+CK V DKV+GK+KG+ FI+FK R A KAL+ PQ+K+ NRM +CQLAS+G
Sbjct: 154 AFKQYGEIEDCKAVCDKVSGKSKGYGFILFKKRSGARKALEEPQKKIGNRMTACQLASMG 213
Query: 186 P--------TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDI 237
P P +Q + +RKIY+SNV D++ ++L FF +FGEIE GP+G D
Sbjct: 214 PVPTSTAPANTPAPGQQQVSEYTQRKIYISNVGADLDPQQLTSFFSKFGEIEEGPLGLDK 273
Query: 238 TTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
TGK +GF +FVYK+VE A+KALEEP K FEGH L CQKA +G
Sbjct: 274 LTGKPKGFCLFVYKSVESAKKALEEPHKNFEGHILHCQKAVDG 316
>gi|356571847|ref|XP_003554083.1| PREDICTED: poly(U)-binding-splicing factor PUF60-B-like isoform 1
[Glycine max]
gi|356571849|ref|XP_003554084.1| PREDICTED: poly(U)-binding-splicing factor PUF60-B-like isoform 2
[Glycine max]
Length = 479
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/224 (54%), Positives = 154/224 (68%), Gaps = 9/224 (4%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
IS LLEP SKDQL+ L+ AA K + + I AD D RKIFVHGLGWDTT +L+S
Sbjct: 88 ISKLLEPLSKDQLLILLCEAAAKHQDVAERIRRAADEDPVHRKIFVHGLGWDTTAGTLIS 147
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
+F GEIE+CK V DKV+GK+KG+ FI+FKTR+ A ALK PQ+K+ NRM +CQLAS+G
Sbjct: 148 SFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKEPQKKIGNRMTACQLASIG 207
Query: 186 PTG-------PGVKEQGAAAQ--GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFD 236
P P V ++ ++KIYVSNV D++ +KL FF RFGEIE GP+G D
Sbjct: 208 PVSNPPQTAPPAVAAPSSSVSEYTQKKIYVSNVGADLDPQKLLAFFSRFGEIEEGPLGLD 267
Query: 237 ITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
TGK +GF +FVY++ E AR+ALEEP K FEGH L CQKA +G
Sbjct: 268 KATGKPKGFCLFVYRSPESARRALEEPHKDFEGHILHCQKAIDG 311
>gi|356501354|ref|XP_003519490.1| PREDICTED: uncharacterized protein LOC100792637 [Glycine max]
Length = 496
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 151/216 (69%), Gaps = 1/216 (0%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
+ LLEP++K+QL L+ A P D + AD D + RKIFVHGLGWD T E+L S
Sbjct: 130 VEKLLEPFTKEQLHSLVTQAVDMFPEFVDSVRRIADVDPAHRKIFVHGLGWDATAETLTS 189
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
FG GEIE+CK V DKV+GK+KG+AFI+FK R A KALK+PQ+K+ NR SCQLAS G
Sbjct: 190 VFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKHPQKKIGNRTTSCQLASAG 249
Query: 186 PT-GPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRG 244
P P + +RKI+VSNV +++ +KL FF++FGE+E GP+G D TGK +G
Sbjct: 250 PVPAPPPSVTPVSEYTQRKIFVSNVSAEIDPQKLLEFFKQFGEVEDGPLGLDKNTGKPKG 309
Query: 245 FAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
FA+FVYK+VE A+KALEEP K +EGH L CQKA +G
Sbjct: 310 FALFVYKSVESAKKALEEPNKNYEGHTLYCQKAVDG 345
>gi|357509099|ref|XP_003624838.1| RNA-binding protein [Medicago truncatula]
gi|355499853|gb|AES81056.1| RNA-binding protein [Medicago truncatula]
Length = 492
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/231 (53%), Positives = 156/231 (67%), Gaps = 8/231 (3%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
+ E I LLEP+SK+Q+ L+ AA+K + D I + AD D S RKIFVHGLGWDTT
Sbjct: 82 DDEPIQKLLEPFSKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSA 141
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
+L++AF GEIE+CK V DKV+GK+KG+ FI+FK R A ALK PQ+K+ NRM +CQL
Sbjct: 142 TLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQL 201
Query: 182 ASVGPT--------GPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPI 233
AS+GP P + +RKIY+SNV +++ +KL GFF RFGEIE GP+
Sbjct: 202 ASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPL 261
Query: 234 GFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284
G D TGK +GF +FVYK+ E AR+ALEEP K FEGH L CQKA +G T
Sbjct: 262 GLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAIDGPKPT 312
>gi|356503320|ref|XP_003520458.1| PREDICTED: uncharacterized protein LOC100819802 [Glycine max]
Length = 523
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 163/367 (44%), Positives = 205/367 (55%), Gaps = 42/367 (11%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
IS LLEP KDQL++L+ AA K + + I + AD D RKIFVHGLGWDTT +L+S
Sbjct: 128 ISKLLEPLGKDQLLNLLCDAAAKHRDVEERIRKAADGDPVHRKIFVHGLGWDTTAGTLIS 187
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
AF GEIE+CK V DKV+GK+KG+ FI+FKTR+ A ALK PQ+K+ NRM +CQLAS+G
Sbjct: 188 AFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGAQNALKEPQKKIGNRMTACQLASIG 247
Query: 186 PTG--PGVKEQGAAAQG-------ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFD 236
P P +AA ++KIYVSNV D++ +KL FF RFGEIE GP+G D
Sbjct: 248 PVSNPPPTPMAPSAAPSSSVSEYTQKKIYVSNVGADLDPQKLLAFFSRFGEIEEGPLGLD 307
Query: 237 ITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQ 296
TGK +GF +FVY+ E AR+ALEEP K FEGH L CQKA +G +A
Sbjct: 308 KATGKPKGFCLFVYRNPESARRALEEPHKDFEGHILHCQKAIDGP------------KAG 355
Query: 297 MMIQKQQQPMLQGQ-QQGQGNEQEQVLAAMAAAQNLALFGQHPG--MHPLYGGFLVNPG- 352
Q+QQ + Q+ Q V A AA PG M P G NP
Sbjct: 356 KFQQQQQHGNVNAHAQRAQFQRNSNVGANAAAGYGGGGSAVQPGHLMAPAGPGIGFNPSA 415
Query: 353 ------LINPMVAGALHQGAIPASNVGAMAGSSVLGSFGPGAAQGLQQQQHVYPNAPQSK 406
+NP +A AL A+ AS G + +++LGS G AA V P P +
Sbjct: 416 AAAAQAALNPAMAQALT--ALLASQ-GTLGLTNLLGSIGTSAA--------VNPGVPAAG 464
Query: 407 SQGTGGG 413
S GGG
Sbjct: 465 SAVQGGG 471
>gi|116787988|gb|ABK24718.1| unknown [Picea sitchensis]
gi|148910800|gb|ABR18466.1| unknown [Picea sitchensis]
Length = 442
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/246 (50%), Positives = 171/246 (69%), Gaps = 8/246 (3%)
Query: 48 SSSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQR 107
+S SSE+E E + E + LLEP++K+QL+D+I+ A K P L + I + AD+D + R
Sbjct: 32 NSDADGSSEAEVEEDEEDMKKLLEPFNKEQLMDIISEHAKKDPQLLESIRKLADKDPAHR 91
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV GLGW+TT E+L S F GE+EEC ++ DK TGK+KG+ F+ FK A KALK+
Sbjct: 92 KIFVRGLGWETTSEALKSVFSQYGELEECTVITDKGTGKSKGYGFVTFKHMVGAQKALKD 151
Query: 168 PQRKVNNRMASCQLASVG--PTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
P +K+++RM +CQ+AS G P P V+ G RKIYVSNV D+ EKL FF ++
Sbjct: 152 PSKKIDSRMTACQMASAGPAPAHPPVEATG------RKIYVSNVSADIPAEKLLNFFSKY 205
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTS 285
GE+E GP+GFD TG+SRGFA+FVYK EGA+KALEEP K+ EGH + C++AAEG +
Sbjct: 206 GEVEEGPLGFDKHTGRSRGFALFVYKNAEGAKKALEEPNKIVEGHSMNCKRAAEGNKHRN 265
Query: 286 SNSSSS 291
+++ S+
Sbjct: 266 AHTPST 271
>gi|21666573|gb|AAM73765.1|AF403292_1 RNA-binding protein AKIP1 [Vicia faba]
Length = 515
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 118/226 (52%), Positives = 155/226 (68%), Gaps = 5/226 (2%)
Query: 60 EPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTT 119
E + E I L+EP++K+Q+ L+ AA K + D I + AD D S RKIFVHGLGWDTT
Sbjct: 104 EEDDEPIKDLVEPFTKEQIATLLCEAAAKHRDVADRIRKIADGDASHRKIFVHGLGWDTT 163
Query: 120 QESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASC 179
+L++AF GEIE+CK V DK +GK+KG+ FI+FK R A ALK PQ+K+ NRM +C
Sbjct: 164 SATLINAFSQYGEIEDCKAVTDKASGKSKGYGFILFKKRSGARNALKEPQKKIGNRMTAC 223
Query: 180 QLASVGPTG----PGVK-EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIG 234
QLAS+GP P V+ Q + +RKIY+SNV +++ KL +F RFGEIE GP+G
Sbjct: 224 QLASIGPVAQTPQPAVQLVQPGSEYTQRKIYISNVGPELDPHKLFAYFSRFGEIEEGPLG 283
Query: 235 FDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
D TGK +GF +FVYK+ E AR++LEEP K FEGH L CQ+A +G
Sbjct: 284 LDKATGKPKGFCLFVYKSAESARRSLEEPHKEFEGHILHCQRAIDG 329
>gi|297820462|ref|XP_002878114.1| hypothetical protein ARALYDRAFT_486125 [Arabidopsis lyrata subsp.
lyrata]
gi|297323952|gb|EFH54373.1| hypothetical protein ARALYDRAFT_486125 [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 162/246 (65%), Gaps = 10/246 (4%)
Query: 45 AATSSSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDV 104
AA +S + + + + E I LLEP+SK+QL+ L+ AA K P + + I E AD D
Sbjct: 79 AAATSGSGNQGDVNDDDDDEPIQDLLEPFSKEQLLSLLKEAAEKHPDVANRIREVADEDP 138
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
RKIFVHGLGWDT E+L+ AF GEIE+CK V DK++GK+KG+ FI++K+R A A
Sbjct: 139 VHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 198
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPG----------VKEQGAAAQGERKIYVSNVPRDVE 214
LK PQ+K+ +RM +CQLAS GP G + + ++KIYVSNV +++
Sbjct: 199 LKQPQKKIGSRMTACQLASKGPVFGGASIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELD 258
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274
+KL GFF +FGEIE GP+G D TG+ +GF +FVYK+ E A++ALEEP K FEGH L C
Sbjct: 259 PQKLLGFFSKFGEIEEGPLGLDKFTGRPKGFCLFVYKSAESAKRALEEPHKTFEGHILHC 318
Query: 275 QKAAEG 280
QKA +G
Sbjct: 319 QKAIDG 324
>gi|356554258|ref|XP_003545465.1| PREDICTED: uncharacterized protein LOC100783742 [Glycine max]
Length = 494
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 151/216 (69%), Gaps = 1/216 (0%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
+ LLEP++K+QL L+ A P D + AD D + RKIFVHGLGWD T ++L +
Sbjct: 129 VEKLLEPFTKEQLHSLVTQAVDMFPEFVDSVRRLADVDPAHRKIFVHGLGWDATADTLTA 188
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
FG GEIE+CK V DKV+GK+KG+AFI+FK R A KALK+PQ+K+ NR SCQLAS G
Sbjct: 189 VFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKHPQKKIGNRTTSCQLASAG 248
Query: 186 PT-GPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRG 244
P P + +RKI+VSNV +++ +KL FF++FGE+E GP+G D TGK +G
Sbjct: 249 PVPAPPPNVTPVSEYTQRKIFVSNVNAEIDPQKLLEFFKQFGEVEDGPLGLDKNTGKPKG 308
Query: 245 FAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
FA+FVYK+VE A+KALEEP K +EGH L CQKA +G
Sbjct: 309 FALFVYKSVESAKKALEEPHKNYEGHTLYCQKAVDG 344
>gi|224137512|ref|XP_002322576.1| predicted protein [Populus trichocarpa]
gi|222867206|gb|EEF04337.1| predicted protein [Populus trichocarpa]
Length = 477
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 150/227 (66%), Gaps = 12/227 (5%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
+ LLEP+ KDQLI+L+ AA + + I + AD+D RKIFVHGLGWDT E+L+S
Sbjct: 92 VEKLLEPFGKDQLINLLREAADAHRDVAEKIRQVADQDPVHRKIFVHGLGWDTNAEALMS 151
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
AF GEIE+CK V DKV+GK+KG+ FI+FK R A KALK PQ+K+ NRM +CQLAS+G
Sbjct: 152 AFKPYGEIEDCKAVCDKVSGKSKGYGFILFKRRSGARKALKEPQKKIGNRMTACQLASIG 211
Query: 186 PTGPGVKEQGAAAQGE------------RKIYVSNVPRDVEKEKLRGFFERFGEIETGPI 233
P Q RKIYVSNV D++ +KL +F FGEIE GP+
Sbjct: 212 PVPQSSGGQAGPVAAAAQAQQPVSEYTLRKIYVSNVAADLDPQKLYSYFSEFGEIEEGPL 271
Query: 234 GFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
G D TGK +GF +FVYK+ EGA+KALEEP K FEGH L CQKA +G
Sbjct: 272 GLDKATGKPKGFCLFVYKSSEGAKKALEEPHKSFEGHMLHCQKAIDG 318
>gi|15226817|ref|NP_181639.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|145331087|ref|NP_001078035.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16612302|gb|AAL27512.1|AF439844_1 At2g41060/T3K9.17 [Arabidopsis thaliana]
gi|3402711|gb|AAD12005.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|22137136|gb|AAM91413.1| At2g41060/T3K9.17 [Arabidopsis thaliana]
gi|110742573|dbj|BAE99200.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330254826|gb|AEC09920.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|330254827|gb|AEC09921.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 451
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 130/259 (50%), Positives = 172/259 (66%), Gaps = 12/259 (4%)
Query: 46 ATSSSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVS 105
A +SS S + +E + E E I LLEP+SKDQL+ L+ AA + + + I AD D+
Sbjct: 67 AETSSGSGNQGNEDDDEEEPIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLV 126
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
RKIFVHGLGWDT +SL+ AF GEIE+CK V+DKV+G++KG+ FI+FK+R A AL
Sbjct: 127 HRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
Query: 166 KNPQRKVNNRMASCQLASVGPT--GPGVKEQGAAAQG------ERKIYVSNVPRDVEKEK 217
K PQ+K+ RM +CQLAS+GP P V A AQ +RKIYVSNV D++ +K
Sbjct: 187 KQPQKKIGTRMTACQLASIGPVQGNPVV----APAQHFNPENVQRKIYVSNVSADIDPQK 242
Query: 218 LRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
L FF RFGEIE GP+G D TG+ +GFA+FVY+++E A+KALEEP K FEGH L C KA
Sbjct: 243 LLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
Query: 278 AEGKNRTSSNSSSSNNQAQ 296
+G + + + N+ Q
Sbjct: 303 NDGPKQVKQHQHNHNSHNQ 321
>gi|297824045|ref|XP_002879905.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325744|gb|EFH56164.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 447
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 128/261 (49%), Positives = 171/261 (65%), Gaps = 16/261 (6%)
Query: 46 ATSSSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVS 105
A +SS S++ + + E E I LLEP+SKDQL+ L+ AA + + + I AD D
Sbjct: 62 AETSSGSANRGNGDDDEEEPIEDLLEPFSKDQLLILLKEAAERHSDVANRIRIVADEDSV 121
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
RKIFVHGLGWDT E+L+ AF GEIE+CK V+DK++G++KG+ FI+FK+R A AL
Sbjct: 122 HRKIFVHGLGWDTKAETLIEAFKQYGEIEDCKCVVDKISGQSKGYGFILFKSRSGARNAL 181
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQG----AAAQG------ERKIYVSNVPRDVEK 215
K PQ+K+ RM +CQLAS+GP QG A AQ +RKIYVSNV D++
Sbjct: 182 KQPQKKIGTRMTACQLASIGPV------QGTPVVAPAQHFNPENVQRKIYVSNVSADLDP 235
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
+KL FF RFGEIE GP+G D TG+ +GFA+FVY+++E A+KALEEP K FEGH L C
Sbjct: 236 QKLLEFFSRFGEIEEGPLGLDKVTGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCH 295
Query: 276 KAAEGKNRTSSNSSSSNNQAQ 296
KA +G + + + N+ Q
Sbjct: 296 KANDGPKQVKQHQHNHNSHNQ 316
>gi|312281743|dbj|BAJ33737.1| unnamed protein product [Thellungiella halophila]
Length = 479
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 195/357 (54%), Gaps = 33/357 (9%)
Query: 45 AATSSSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDV 104
AATS S + + E I LLEP+SK+QL++L+ AA K + + I E AD D
Sbjct: 85 AATSGSGNQGVADTDD--DEPIKDLLEPFSKEQLLNLLKEAAGKHLDVANRIREVADEDP 142
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
RKIFVHGLGWDT E+L+ AF GEIE+CK V DKV+GK+KG+ FI++K+R A A
Sbjct: 143 VHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKVSGKSKGYGFILYKSRSGARNA 202
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPG----------VKEQGAAAQGERKIYVSNVPRDVE 214
LK PQ+K+ +RM +CQLAS GP G + + ++KIYVSNV +++
Sbjct: 203 LKQPQKKIGSRMTACQLASKGPVFGGNPVAAAASVVPAQHSNSEHTQKKIYVSNVGAELD 262
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274
+KL FF RFGEIE GP+G D TG+ +GF +FVYK+ E A++ALEEP K FEGH L C
Sbjct: 263 PQKLLAFFSRFGEIEEGPLGLDKFTGRPKGFCLFVYKSPESAKRALEEPHKTFEGHILHC 322
Query: 275 QKAAEGKNRTSSNSSSSNNQAQMMIQKQQQP----------MLQGQQQGQGNEQEQVLAA 324
QKA +G +++N Q+ ++ G Q G G + + A
Sbjct: 323 QKAIDGPKPGKPQQYNTHNHNNPRFQRNDNNGYGAPGGHGHLMAGNQAGMGAPAQALNPA 382
Query: 325 MAAAQNLALFGQHPGM--HPLYGGFL---------VNPGLINPMVAGALHQGAIPAS 370
+ A L Q G+ +P G L VNPG M +G Q P +
Sbjct: 383 IGQALTALLASQGAGLAFNPAIGQALLGSLGTATGVNPGAGAGMPSGYATQAMAPGT 439
>gi|296083995|emb|CBI24383.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/349 (42%), Positives = 192/349 (55%), Gaps = 33/349 (9%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E+I LL+P+ KDQ+I L+ AA P IL + D RKIFVHGLGWD T E+L
Sbjct: 169 ETIRKLLQPFGKDQIIALLKEAADSNPATLSKILPAVESDPVHRKIFVHGLGWDATNETL 228
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
SAF G+IEEC +V DK+TG++KG+ F++FKTR A KALK PQ+K+ NRMA+C LA+
Sbjct: 229 TSAFKQYGQIEECNVVTDKITGRSKGYGFVLFKTRSGARKALKQPQKKIGNRMAACHLAA 288
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
GP+ G A ER++YV NV + EKLR FF +FGEIE GP+GFD TGK R
Sbjct: 289 AGPS--GSNPAAGADVNERRLYVGNVGPQISAEKLRTFFAKFGEIEDGPLGFDKATGKFR 346
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQC-----------QKAAEGKNRTSSNSSSSN 292
GFAI V+KT EG ++ALEEP K FE +LQC Q+A G + S+
Sbjct: 347 GFAIIVFKTAEGMKRALEEPIKTFESCKLQCSRKVAKTTPVQQQAVAGSTGATLPPSNYQ 406
Query: 293 NQAQMMIQKQ--------QQPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLY 344
QA M Q Q +L G Q G + AA A Q PG+ +
Sbjct: 407 LQAYQMGLNQGLIGQNVNPQGVLVGHNQAVGILNPVLGAAAALNQ--------PGLSQGF 458
Query: 345 GGFLVNPGLINPMVAGALHQGAIPASNVGAMAGSSVLGSFG-PGAAQGL 392
G L P +N L G P + ++ VLG++G P A QGL
Sbjct: 459 AGGLSQP--VNRAPPVGLSAGFGPQLGMNSI-NPGVLGAYGSPAAFQGL 504
>gi|225436055|ref|XP_002276040.1| PREDICTED: uncharacterized protein LOC100263294 [Vitis vinifera]
Length = 457
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/215 (53%), Positives = 146/215 (67%), Gaps = 2/215 (0%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
+ E+I LL+P+ KDQ+I L+ AA P IL + D RKIFVHGLGWD T E
Sbjct: 81 KRETIRKLLQPFGKDQIIALLKEAADSNPATLSKILPAVESDPVHRKIFVHGLGWDATNE 140
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
+L SAF G+IEEC +V DK+TG++KG+ F++FKTR A KALK PQ+K+ NRMA+C L
Sbjct: 141 TLTSAFKQYGQIEECNVVTDKITGRSKGYGFVLFKTRSGARKALKQPQKKIGNRMAACHL 200
Query: 182 ASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGK 241
A+ GP+ G A ER++YV NV + EKLR FF +FGEIE GP+GFD TGK
Sbjct: 201 AAAGPS--GSNPAAGADVNERRLYVGNVGPQISAEKLRTFFAKFGEIEDGPLGFDKATGK 258
Query: 242 SRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
RGFAI V+KT EG ++ALEEP K FE +LQC +
Sbjct: 259 FRGFAIIVFKTAEGMKRALEEPIKTFESCKLQCSR 293
>gi|18410591|ref|NP_567042.1| UBP1-associated protein 2A [Arabidopsis thaliana]
gi|30694526|ref|NP_850710.1| UBP1-associated protein 2A [Arabidopsis thaliana]
gi|30694529|ref|NP_850711.1| UBP1-associated protein 2A [Arabidopsis thaliana]
gi|334186033|ref|NP_001190109.1| UBP1-associated protein 2A [Arabidopsis thaliana]
gi|334186035|ref|NP_001190110.1| UBP1-associated protein 2A [Arabidopsis thaliana]
gi|14194149|gb|AAK56269.1|AF367280_1 AT3g56860/T8M16_190 [Arabidopsis thaliana]
gi|9663005|emb|CAC00749.1| putative protein [Arabidopsis thaliana]
gi|14335132|gb|AAK59846.1| AT3g56860/T8M16_190 [Arabidopsis thaliana]
gi|19682816|emb|CAD28672.1| UBP1 interacting protein 2a [Arabidopsis thaliana]
gi|20259482|gb|AAM13861.1| unknown protein [Arabidopsis thaliana]
gi|21436451|gb|AAM51426.1| unknown protein [Arabidopsis thaliana]
gi|22137068|gb|AAM91379.1| At3g56860/T8M16_190 [Arabidopsis thaliana]
gi|30102516|gb|AAP21176.1| At3g56860/T8M16_190 [Arabidopsis thaliana]
gi|332646054|gb|AEE79575.1| UBP1-associated protein 2A [Arabidopsis thaliana]
gi|332646055|gb|AEE79576.1| UBP1-associated protein 2A [Arabidopsis thaliana]
gi|332646056|gb|AEE79577.1| UBP1-associated protein 2A [Arabidopsis thaliana]
gi|332646057|gb|AEE79578.1| UBP1-associated protein 2A [Arabidopsis thaliana]
gi|332646058|gb|AEE79579.1| UBP1-associated protein 2A [Arabidopsis thaliana]
Length = 478
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/242 (47%), Positives = 161/242 (66%), Gaps = 10/242 (4%)
Query: 49 SSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRK 108
++ +S S ++ + + E I LLEP+SK+Q++ L+ AA K + + I E AD D RK
Sbjct: 82 AAATSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRK 141
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
IFVHGLGWDT E+L+ AF GEIE+CK V DK++GK+KG+ FI++K+R A ALK P
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 169 QRKVNNRMASCQLASVGPTGPG----------VKEQGAAAQGERKIYVSNVPRDVEKEKL 218
Q+K+ +RM +CQLAS GP G + + ++KIYVSNV +++ +KL
Sbjct: 202 QKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKL 261
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
FF +FGEIE GP+G D TG+ +GF +FVYK+ E A++ALEEP K FEGH L CQKA
Sbjct: 262 LMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAI 321
Query: 279 EG 280
+G
Sbjct: 322 DG 323
>gi|227202722|dbj|BAH56834.1| AT3G56860 [Arabidopsis thaliana]
Length = 478
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 116/242 (47%), Positives = 161/242 (66%), Gaps = 10/242 (4%)
Query: 49 SSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRK 108
++ +S S ++ + + E I LLEP+SK+Q++ L+ AA K + + I E AD D RK
Sbjct: 82 AAATSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRK 141
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
IFVHGLGWDT E+L+ AF GEIE+CK V DK++GK+KG+ FI++K+R A ALK P
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 169 QRKVNNRMASCQLASVGPTGPG----------VKEQGAAAQGERKIYVSNVPRDVEKEKL 218
Q+K+ +RM +CQLAS GP G + + ++KIYVSNV +++ +KL
Sbjct: 202 QKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKL 261
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
FF +FGEIE GP+G D TG+ +GF +FVYK+ E A++ALEEP K FEGH L CQKA
Sbjct: 262 LMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAI 321
Query: 279 EG 280
+G
Sbjct: 322 DG 323
>gi|14596195|gb|AAK68825.1| putative protein [Arabidopsis thaliana]
gi|20148397|gb|AAM10089.1| putative protein [Arabidopsis thaliana]
Length = 478
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 116/242 (47%), Positives = 160/242 (66%), Gaps = 10/242 (4%)
Query: 49 SSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRK 108
++ +S S + + + E I LLEP+SK+Q++ L+ AA K + + I E AD D RK
Sbjct: 82 AAATSGSGDQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRK 141
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
IFVHGLGWDT E+L+ AF GEIE+CK V DK++GK+KG+ FI++K+R A ALK P
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 169 QRKVNNRMASCQLASVGPTGPG----------VKEQGAAAQGERKIYVSNVPRDVEKEKL 218
Q+K+ +RM +CQLAS GP G + + ++KIYVSNV +++ +KL
Sbjct: 202 QKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKL 261
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
FF +FGEIE GP+G D TG+ +GF +FVYK+ E A++ALEEP K FEGH L CQKA
Sbjct: 262 LMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAI 321
Query: 279 EG 280
+G
Sbjct: 322 DG 323
>gi|357493687|ref|XP_003617132.1| Heterogeneous nuclear ribonucleoprotein D0 [Medicago truncatula]
gi|355518467|gb|AET00091.1| Heterogeneous nuclear ribonucleoprotein D0 [Medicago truncatula]
Length = 523
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 151/216 (69%), Gaps = 1/216 (0%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
+ LLEP++K+QL L+ A K P L +++ + AD D + RKIFVHGLGWD T E+L +
Sbjct: 124 VEKLLEPFTKEQLHALVKQAVEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTT 183
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
F GEIE+CK V DK +GK+KG+AFI+FK R +ALK PQ+ + NR SCQLAS G
Sbjct: 184 TFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAG 243
Query: 186 PTGPGVKEQGAAAQ-GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRG 244
P ++ +RKI+VSNV D++ +KL FF++FGE++ GP+G D TGK +G
Sbjct: 244 PVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKG 303
Query: 245 FAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
FA+FVYKTVE A+KALEEP K+FEGH L CQKA +G
Sbjct: 304 FALFVYKTVESAKKALEEPNKVFEGHTLYCQKAVDG 339
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
+ +QRKIFV + D + LL F GE+++ L +DK TGK KGFA V+KT ++A
Sbjct: 257 EYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAK 316
Query: 163 KALKNPQRKVNNRMASCQLASVGPTG 188
KAL+ P + CQ A GP G
Sbjct: 317 KALEEPNKVFEGHTLYCQKAVDGPKG 342
>gi|194698020|gb|ACF83094.1| unknown [Zea mays]
gi|414876935|tpg|DAA54066.1| TPA: hypothetical protein ZEAMMB73_489429 [Zea mays]
gi|414876936|tpg|DAA54067.1| TPA: hypothetical protein ZEAMMB73_489429 [Zea mays]
Length = 379
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/234 (51%), Positives = 154/234 (65%), Gaps = 19/234 (8%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILET----ADRDVSQRKIFVHGLGWD 117
+ SI +LL+ + KDQL++L+ AA + H +L T AD D +QRKIFVHGLGWD
Sbjct: 80 DQASIQALLDSFPKDQLVELLRDAA----IAHGDVLTTIRRVADADPAQRKIFVHGLGWD 135
Query: 118 TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177
TT ++L AFG GEIE+ K+V D+ TGK KG+ FI+F+ R A AL+ PQ+K+ NR
Sbjct: 136 TTTDTLTEAFGPYGEIEDLKVVTDRNTGKCKGYGFILFRHRSGARAALREPQKKIGNRST 195
Query: 178 SCQLASVGPTGPGVKEQGAAA-----------QGERKIYVSNVPRDVEKEKLRGFFERFG 226
+CQLASVGP G A A +RKI+VSNV D++ +KL FF RFG
Sbjct: 196 ACQLASVGPVPGGAPNSAAPAPVQLQLPPVSEYTQRKIFVSNVGADIDPQKLLQFFARFG 255
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
EIE GP+G D TGK +GFA+FVYKT+E A+KALEEP K FEG L CQKA +G
Sbjct: 256 EIEEGPLGLDKVTGKPKGFALFVYKTIESAKKALEEPHKHFEGVMLHCQKAIDG 309
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 51/84 (60%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
+ +QRKIFV +G D + LL F GEIEE L +DKVTGK KGFA V+KT ++A
Sbjct: 227 EYTQRKIFVSNVGADIDPQKLLQFFARFGEIEEGPLGLDKVTGKPKGFALFVYKTIESAK 286
Query: 163 KALKNPQRKVNNRMASCQLASVGP 186
KAL+ P + M CQ A GP
Sbjct: 287 KALEEPHKHFEGVMLHCQKAIDGP 310
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 191 VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
++ A +RKI+V + D + L F +GEIE + D TGK +G+ ++
Sbjct: 114 IRRVADADPAQRKIFVHGLGWDTTTDTLTEAFGPYGEIEDLKVVTDRNTGKCKGYGFILF 173
Query: 251 KTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQGQ 310
+ GAR AL EPQK CQ A+ G + N+ A +Q Q P+ +
Sbjct: 174 RHRSGARAALREPQKKIGNRSTACQLASVG----PVPGGAPNSAAPAPVQLQLPPVSEYT 229
Query: 311 QQ 312
Q+
Sbjct: 230 QR 231
>gi|414876934|tpg|DAA54065.1| TPA: hypothetical protein ZEAMMB73_489429 [Zea mays]
Length = 372
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/234 (51%), Positives = 154/234 (65%), Gaps = 19/234 (8%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILET----ADRDVSQRKIFVHGLGWD 117
+ SI +LL+ + KDQL++L+ AA + H +L T AD D +QRKIFVHGLGWD
Sbjct: 80 DQASIQALLDSFPKDQLVELLRDAA----IAHGDVLTTIRRVADADPAQRKIFVHGLGWD 135
Query: 118 TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177
TT ++L AFG GEIE+ K+V D+ TGK KG+ FI+F+ R A AL+ PQ+K+ NR
Sbjct: 136 TTTDTLTEAFGPYGEIEDLKVVTDRNTGKCKGYGFILFRHRSGARAALREPQKKIGNRST 195
Query: 178 SCQLASVGPTGPGVKEQGAAA-----------QGERKIYVSNVPRDVEKEKLRGFFERFG 226
+CQLASVGP G A A +RKI+VSNV D++ +KL FF RFG
Sbjct: 196 ACQLASVGPVPGGAPNSAAPAPVQLQLPPVSEYTQRKIFVSNVGADIDPQKLLQFFARFG 255
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
EIE GP+G D TGK +GFA+FVYKT+E A+KALEEP K FEG L CQKA +G
Sbjct: 256 EIEEGPLGLDKVTGKPKGFALFVYKTIESAKKALEEPHKHFEGVMLHCQKAIDG 309
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 51/84 (60%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
+ +QRKIFV +G D + LL F GEIEE L +DKVTGK KGFA V+KT ++A
Sbjct: 227 EYTQRKIFVSNVGADIDPQKLLQFFARFGEIEEGPLGLDKVTGKPKGFALFVYKTIESAK 286
Query: 163 KALKNPQRKVNNRMASCQLASVGP 186
KAL+ P + M CQ A GP
Sbjct: 287 KALEEPHKHFEGVMLHCQKAIDGP 310
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 191 VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
++ A +RKI+V + D + L F +GEIE + D TGK +G+ ++
Sbjct: 114 IRRVADADPAQRKIFVHGLGWDTTTDTLTEAFGPYGEIEDLKVVTDRNTGKCKGYGFILF 173
Query: 251 KTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQGQ 310
+ GAR AL EPQK CQ A+ G + N+ A +Q Q P+ +
Sbjct: 174 RHRSGARAALREPQKKIGNRSTACQLASVG----PVPGGAPNSAAPAPVQLQLPPVSEYT 229
Query: 311 QQ 312
Q+
Sbjct: 230 QR 231
>gi|224054494|ref|XP_002298288.1| predicted protein [Populus trichocarpa]
gi|222845546|gb|EEE83093.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 149/215 (69%), Gaps = 1/215 (0%)
Query: 60 EPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTT 119
+ + E+IS +L+P++K+ LI ++ AA+ P + I + D D RKIFVHGLGWD
Sbjct: 82 DSKRETISKILQPFTKELLIKILKEAASTDPCIATEIFNSVDSDPVHRKIFVHGLGWDAH 141
Query: 120 QESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASC 179
E+L+S F GEIEECK+V DK TG++KG+ F++FKTR AA KALK PQ+KV NR SC
Sbjct: 142 NETLISVFKKYGEIEECKIVTDKATGRSKGYGFLLFKTRIAARKALKEPQKKVGNRTVSC 201
Query: 180 QLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239
QLAS+G G K+ ++ RK+Y+ NV + E LR FF +FGEIE GP GFD +T
Sbjct: 202 QLASLG-KGQNQKQDNSSDVSLRKLYIGNVGPQISVENLREFFAQFGEIEDGPSGFDKST 260
Query: 240 GKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274
K RGFA VYK++EG RKALEEP K+FEG +LQC
Sbjct: 261 MKFRGFAFIVYKSLEGIRKALEEPVKVFEGLKLQC 295
>gi|414876937|tpg|DAA54068.1| TPA: RNA binding protein isoform 1 [Zea mays]
gi|414876938|tpg|DAA54069.1| TPA: RNA binding protein isoform 2 [Zea mays]
Length = 454
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/357 (40%), Positives = 187/357 (52%), Gaps = 52/357 (14%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILET----ADRDVSQRKIFVHGLGWD 117
+ SI +LL+ + KDQL++L+ AA + H +L T AD D +QRKIFVHGLGWD
Sbjct: 80 DQASIQALLDSFPKDQLVELLRDAA----IAHGDVLTTIRRVADADPAQRKIFVHGLGWD 135
Query: 118 TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177
TT ++L AFG GEIE+ K+V D+ TGK KG+ FI+F+ R A AL+ PQ+K+ NR
Sbjct: 136 TTTDTLTEAFGPYGEIEDLKVVTDRNTGKCKGYGFILFRHRSGARAALREPQKKIGNRST 195
Query: 178 SCQLASVGPTGPGVKEQGAAA-----------QGERKIYVSNVPRDVEKEKLRGFFERFG 226
+CQLASVGP G A A +RKI+VSNV D++ +KL FF RFG
Sbjct: 196 ACQLASVGPVPGGAPNSAAPAPVQLQLPPVSEYTQRKIFVSNVGADIDPQKLLQFFARFG 255
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
EIE GP+G D TGK +GFA+FVYKT+E A+KALEEP K FEG L CQKA +G
Sbjct: 256 EIEEGPLGLDKVTGKPKGFALFVYKTIESAKKALEEPHKHFEGVMLHCQKAIDGPKPNKL 315
Query: 287 NSSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGG 346
+ A + G G + + Q ++ PG+ L GG
Sbjct: 316 GGAGGFFGAGASSGGKGF-------AGYGATSHSLPGTVGIVQPMSPLA--PGLASLPGG 366
Query: 347 FLVNPGLINPMVAGALH-----------------------QGAIPASNVGAMAGSSV 380
PG ++P + AL G P GA+ GSSV
Sbjct: 367 ISAAPG-VDPALGQALTALLATQQGGGLSFNSILGVGANGSGLPPQGPTGALGGSSV 422
>gi|226531394|ref|NP_001149939.1| RNA binding protein [Zea mays]
gi|195635617|gb|ACG37277.1| RNA binding protein [Zea mays]
Length = 455
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/357 (40%), Positives = 187/357 (52%), Gaps = 52/357 (14%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILET----ADRDVSQRKIFVHGLGWD 117
+ SI +LL+ + KDQL++L+ AA + H +L T AD D +QRKIFVHGLGWD
Sbjct: 81 DQASIQALLDSFPKDQLVELLRDAA----IAHGDVLTTIRRVADADPAQRKIFVHGLGWD 136
Query: 118 TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177
TT ++L AFG GEIE+ K+V D+ TGK KG+ FI+F+ R A AL+ PQ+K+ NR
Sbjct: 137 TTTDTLTEAFGPYGEIEDLKVVTDRNTGKCKGYGFILFRHRSGARAALREPQKKIGNRST 196
Query: 178 SCQLASVGPTGPGVKEQGAAA-----------QGERKIYVSNVPRDVEKEKLRGFFERFG 226
+CQLASVGP G A A +RKI+VSNV D++ +KL FF RFG
Sbjct: 197 ACQLASVGPVPGGAPNSAAPAPVQLQLPPVSEYTQRKIFVSNVGADIDPQKLLQFFARFG 256
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
EIE GP+G D TGK +GFA+FVYKT+E A+KALEEP K FEG L CQKA +G
Sbjct: 257 EIEEGPLGLDKVTGKPKGFALFVYKTIESAKKALEEPHKHFEGVMLHCQKAIDGPKPNKL 316
Query: 287 NSSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGG 346
+ A + G G + + Q ++ PG+ L GG
Sbjct: 317 GGAGGFFGAGASSGGKGF-------AGYGATSHSLPGTVGIVQPMSPLA--PGLASLPGG 367
Query: 347 FLVNPGLINPMVAGALH-----------------------QGAIPASNVGAMAGSSV 380
PG ++P + AL G P GA+ GSSV
Sbjct: 368 ISAAPG-VDPALGQALTALLATQQGGGLSFNSILGVGANGSGLPPQGPTGALGGSSV 423
>gi|194700464|gb|ACF84316.1| unknown [Zea mays]
Length = 410
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 143/357 (40%), Positives = 187/357 (52%), Gaps = 52/357 (14%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILET----ADRDVSQRKIFVHGLGWD 117
+ SI +LL+ + KDQL++L+ AA + H +L T AD D +QRKIFVHGLGWD
Sbjct: 36 DQASIQALLDSFPKDQLVELLRDAA----IAHGDVLTTIRRVADADPAQRKIFVHGLGWD 91
Query: 118 TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177
TT ++L AFG GEIE+ K+V D+ TGK KG+ FI+F+ R A AL+ PQ+K+ NR
Sbjct: 92 TTTDTLTEAFGPYGEIEDLKVVTDRNTGKCKGYGFILFRHRSGARAALREPQKKIGNRST 151
Query: 178 SCQLASVGPTGPGVKEQGAAA-----------QGERKIYVSNVPRDVEKEKLRGFFERFG 226
+CQLASVGP G A A +RKI+VSNV D++ +KL FF RFG
Sbjct: 152 ACQLASVGPVPGGAPNSAAPAPVQLQLPPVSEYTQRKIFVSNVGADIDPQKLLQFFARFG 211
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
EIE GP+G D TGK +GFA+FVYKT+E A+KALEEP K FEG L CQKA +G
Sbjct: 212 EIEEGPLGLDKVTGKPKGFALFVYKTIESAKKALEEPHKHFEGVMLHCQKAIDGPKPNKL 271
Query: 287 NSSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGG 346
+ A + G G + + Q ++ PG+ L GG
Sbjct: 272 GGAGGFFGAGASSGGKGF-------AGYGATSHSLPGTVGIVQPMSPLA--PGLASLPGG 322
Query: 347 FLVNPGLINPMVAGALH-----------------------QGAIPASNVGAMAGSSV 380
PG ++P + AL G P GA+ GSSV
Sbjct: 323 ISAAPG-VDPALGQALTALLATQQGGGLSFNSILGVGANGSGLPPQGPTGALGGSSV 378
>gi|297596504|ref|NP_001042672.2| Os01g0265800 [Oryza sativa Japonica Group]
gi|255673092|dbj|BAF04586.2| Os01g0265800, partial [Oryza sativa Japonica Group]
Length = 524
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 154/239 (64%), Gaps = 24/239 (10%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHIL----ETADRDVSQRKIFVHGLGWD 117
+++SI +LL + KDQL++L++AAA L H+ +L AD D + RKIFVHGLGWD
Sbjct: 145 DADSIQALLNSFPKDQLVELLSAAA----LSHEDVLTAVHRAADADPALRKIFVHGLGWD 200
Query: 118 TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177
T E+L AF GEIE+ ++V D+ TGK KG+ FI+F R A AL+ PQ+K+ NR
Sbjct: 201 ATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRRSGARAALREPQKKIGNRTT 260
Query: 178 SCQLASVGPTGPG----------------VKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
+CQLASVGP PG + + +RKI+VSNV D++ +KL F
Sbjct: 261 ACQLASVGPVPPGGMATNPAPAVAPAPAQLALPPVSEYTQRKIFVSNVGADIDPQKLLQF 320
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
F ++GEIE GP+G D TGK +GFA+FVYKT++ A+KAL+EP K FEG L CQKA +G
Sbjct: 321 FSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLDSAKKALQEPHKQFEGVVLHCQKAIDG 379
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 51/84 (60%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
+ +QRKIFV +G D + LL F GEIEE L +DKVTGK KGFA V+KT +A
Sbjct: 297 EYTQRKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLDSAK 356
Query: 163 KALKNPQRKVNNRMASCQLASVGP 186
KAL+ P ++ + CQ A GP
Sbjct: 357 KALQEPHKQFEGVVLHCQKAIDGP 380
>gi|242056941|ref|XP_002457616.1| hypothetical protein SORBIDRAFT_03g010380 [Sorghum bicolor]
gi|241929591|gb|EES02736.1| hypothetical protein SORBIDRAFT_03g010380 [Sorghum bicolor]
Length = 464
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/232 (48%), Positives = 149/232 (64%), Gaps = 13/232 (5%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
+ SI +LL+ + KDQL++L+ AA + I AD D +QRKIFVHGLGWD T +
Sbjct: 88 DPASIQALLDSFPKDQLVELLRDAAVAHGDVLSAIRHVADADPAQRKIFVHGLGWDATTD 147
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
+L AFG G+IE+ ++V D+ TGK KG+ FI+F+ R A AL+ PQ+K+ NR +CQL
Sbjct: 148 TLSEAFGPYGDIEDLRVVTDRNTGKCKGYGFILFRHRSGARAALREPQKKIGNRSTACQL 207
Query: 182 ASVGPTGPGVKEQGAAAQG-------------ERKIYVSNVPRDVEKEKLRGFFERFGEI 228
ASVGP G A +RKI+VSNV D++ +KL FF R+GEI
Sbjct: 208 ASVGPVPGGAPNSAGAVPAPAQLHLPPVSEYTQRKIFVSNVGADIDPKKLLQFFARYGEI 267
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
E GP+G D TGK +GFA+FVYKT+E A+KALEEP K F+G L CQKA +G
Sbjct: 268 EEGPLGLDKVTGKPKGFALFVYKTIESAKKALEEPHKHFDGVVLHCQKAIDG 319
>gi|6815067|dbj|BAA90354.1| putative UBP1 interacting protein 1a [Oryza sativa Japonica Group]
gi|125525303|gb|EAY73417.1| hypothetical protein OsI_01299 [Oryza sativa Indica Group]
gi|125569833|gb|EAZ11348.1| hypothetical protein OsJ_01215 [Oryza sativa Japonica Group]
gi|215712214|dbj|BAG94341.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766461|dbj|BAG98769.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 490
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 153/239 (64%), Gaps = 24/239 (10%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHIL----ETADRDVSQRKIFVHGLGWD 117
+++SI +LL + KDQL++L++AAA L H+ +L AD D + RKIFVHGLGWD
Sbjct: 111 DADSIQALLNSFPKDQLVELLSAAA----LSHEDVLTAVHRAADADPALRKIFVHGLGWD 166
Query: 118 TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177
T E+L AF GEIE+ ++V D+ TGK KG+ FI+F R A AL+ PQ+K+ NR
Sbjct: 167 ATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRRSGARAALREPQKKIGNRTT 226
Query: 178 SCQLASVGPTGPGVKEQGAAAQG----------------ERKIYVSNVPRDVEKEKLRGF 221
+CQLASVGP PG A +RKI+VSNV D++ +KL F
Sbjct: 227 ACQLASVGPVPPGGMATNPAPAVAPAPAQLALPPVSEYTQRKIFVSNVGADIDPQKLLQF 286
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
F ++GEIE GP+G D TGK +GFA+FVYKT++ A+KAL+EP K FEG L CQKA +G
Sbjct: 287 FSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLDSAKKALQEPHKQFEGVVLHCQKAIDG 345
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 51/84 (60%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
+ +QRKIFV +G D + LL F GEIEE L +DKVTGK KGFA V+KT +A
Sbjct: 263 EYTQRKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLDSAK 322
Query: 163 KALKNPQRKVNNRMASCQLASVGP 186
KAL+ P ++ + CQ A GP
Sbjct: 323 KALQEPHKQFEGVVLHCQKAIDGP 346
>gi|326532214|dbj|BAK01483.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 488
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 153/245 (62%), Gaps = 28/245 (11%)
Query: 58 ESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWD 117
+S+P S I LLE + K+QL++L+ AA + + + AD D +QRKIFVHGLGWD
Sbjct: 109 DSDPAS--IQELLEVFPKEQLVELLRDAAVGHRDVLESVRRAADADPAQRKIFVHGLGWD 166
Query: 118 TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177
TT + L AF GEIE+ KLV D+ TGK KG+ FI+F+ R A AL PQ+K+ NR
Sbjct: 167 TTVDILTEAFRPYGEIEDLKLVSDRNTGKCKGYGFILFRRRSGARAALLEPQKKIGNRTT 226
Query: 178 SCQLASVGPTGPGVKEQGAAAQ----------------------GERKIYVSNVPRDVEK 215
SCQLAS+GP V GAA +RKI+VSNV D++
Sbjct: 227 SCQLASLGP----VPSGGAANNPMLATAPALAPAALILPPVSEYTQRKIFVSNVGADIDP 282
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
+KL FF ++GEIE GP+G D TGK +GFA+FVY+T+EGA+KAL+EP K FEG L CQ
Sbjct: 283 QKLLQFFSKYGEIEEGPLGLDKATGKPKGFALFVYRTLEGAKKALQEPHKSFEGVVLHCQ 342
Query: 276 KAAEG 280
KA +G
Sbjct: 343 KAIDG 347
>gi|326506732|dbj|BAJ91407.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 488
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 153/245 (62%), Gaps = 28/245 (11%)
Query: 58 ESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWD 117
+S+P S I LLE + K+QL++L+ AA + + + AD D +QRKIFVHGLGWD
Sbjct: 109 DSDPAS--IQELLEVFPKEQLVELLRDAAVGHRDVLESVRRAADADPAQRKIFVHGLGWD 166
Query: 118 TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177
TT + L AF GEIE+ KLV D+ TGK KG+ FI+F+ R A AL PQ+K+ NR
Sbjct: 167 TTVDILTEAFRPYGEIEDLKLVSDRNTGKCKGYGFILFRRRSGARAALLEPQKKIGNRTT 226
Query: 178 SCQLASVGPTGPGVKEQGAAAQ----------------------GERKIYVSNVPRDVEK 215
SCQLAS+GP V GAA +RKI+VSNV D++
Sbjct: 227 SCQLASLGP----VPSGGAANNPMLATAPALAPAALILPPVSEYTQRKIFVSNVGADIDP 282
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
+KL FF ++GEIE GP+G D TGK +GFA+FVY+T+EGA+KAL+EP K FEG L CQ
Sbjct: 283 QKLLQFFSKYGEIEEGPLGLDKATGKPKGFALFVYRTLEGAKKALQEPHKSFEGVVLHCQ 342
Query: 276 KAAEG 280
KA +G
Sbjct: 343 KAIDG 347
>gi|225461628|ref|XP_002285377.1| PREDICTED: uncharacterized protein LOC100248626 [Vitis vinifera]
gi|147789426|emb|CAN66609.1| hypothetical protein VITISV_017556 [Vitis vinifera]
Length = 449
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 148/231 (64%), Gaps = 1/231 (0%)
Query: 51 CSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIF 110
S+ +S ++ E ++EP+ DQL++++ AA + + D I ADRD++QRK+F
Sbjct: 15 VSTDGDSLTKLAPEDARKIIEPFGHDQLLEILQNAAVRHLDVLDAIRSIADRDLTQRKLF 74
Query: 111 VHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR 170
+ GLGWDTT E L F GE+EE +++DKVT K+KG+ F+ FK A+ ALK P +
Sbjct: 75 IRGLGWDTTTEGLRQLFSAYGELEEAVVILDKVTAKSKGYGFVTFKHVDGALLALKEPSK 134
Query: 171 KVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIET 230
K++ RM QLA+ G +GP A RKIYV+NVP D+ ++L F +GEIE
Sbjct: 135 KIDGRMTVTQLAASGLSGP-ASNASAVDVSMRKIYVANVPVDMPADRLLAHFSSYGEIEE 193
Query: 231 GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
GP+GFD TGKSRGFA+FVYKT E A+ AL +P KM +G QL C+ A EGK
Sbjct: 194 GPLGFDKQTGKSRGFALFVYKTAEAAQAALVDPTKMIDGRQLVCKLAIEGK 244
>gi|224286903|gb|ACN41154.1| unknown [Picea sitchensis]
Length = 446
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 146/218 (66%), Gaps = 4/218 (1%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E +LEP++++QL+D++ AATK + + + AD+D +QRK+FV GLGWDT ESL
Sbjct: 21 EDTRKMLEPFTREQLLDILQEAATKHLGVLEQVRSIADKDPAQRKLFVRGLGWDTNTESL 80
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ F GE+EE +++DK TGK+KG+ F+ FK A+ ALK P +K++ RM QLAS
Sbjct: 81 KALFSQFGELEEGVVIMDKNTGKSKGYGFVTFKHMDGALNALKEPSKKIDGRMTVSQLAS 140
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
G Q AA RKIYV NVP D+ ++L F ++GEIE GP+GFD +GKSR
Sbjct: 141 AGSQ----PAQPAADVSARKIYVGNVPMDMAADRLLSLFSQYGEIEEGPLGFDKQSGKSR 196
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
GFA+F++K+V+ ++ALEEP K +GHQ+ C+ A EG+
Sbjct: 197 GFALFIFKSVDATKRALEEPMKTIDGHQMFCKLAVEGQ 234
>gi|226532486|ref|NP_001148086.1| LOC100281694 [Zea mays]
gi|195615710|gb|ACG29685.1| RNA-binding protein AKIP1 [Zea mays]
gi|413919663|gb|AFW59595.1| RNA-binding protein AKIP1 isoform 1 [Zea mays]
gi|413919664|gb|AFW59596.1| RNA-binding protein AKIP1 isoform 2 [Zea mays]
Length = 521
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 158/255 (61%), Gaps = 25/255 (9%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E I LLEP S++QL+ L+ AA P + + D + RK+FVHGLGW + E L
Sbjct: 68 EDIGKLLEPLSREQLVALLRTAAETSPATMAAVRRAVESDPASRKLFVHGLGWGASAEDL 127
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
SAF GE+E+C+++ DK +G++KG+ F++F++R++A++AL PQ ++ R+A C LA+
Sbjct: 128 RSAFSCFGELEDCRVISDKQSGRSKGYGFVLFRSRRSALRALSRPQLQIGGRLAFCHLAA 187
Query: 184 VGPTGPGVKEQG----------------------AAAQGE---RKIYVSNVPRDVEKEKL 218
GP P + Q +++Q + RKI+V NV DV+ ++L
Sbjct: 188 SGPAPPASQSQNPSSNPNTNANSNSNTTTNASGSSSSQPDNMPRKIFVGNVHADVDVDRL 247
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+F +FGEIE GP GFD TGK +GFA+FVYK+VE AR+ALEEP K F+G L QKA
Sbjct: 248 YNYFAQFGEIEEGPFGFDKNTGKPKGFALFVYKSVESARRALEEPMKNFDGKTLNVQKAI 307
Query: 279 EGKNRTSSNSSSSNN 293
+G+ + SS ++++ N
Sbjct: 308 DGRTKGSSGTNTNAN 322
>gi|326490764|dbj|BAJ90049.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326505372|dbj|BAJ91121.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326519588|dbj|BAK00167.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326530954|dbj|BAK01275.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 152/242 (62%), Gaps = 20/242 (8%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
E E ++ LLEP S++QL+ L+ AAA P + A+ D + RK+FVHGLGW E
Sbjct: 65 EEEDVTKLLEPLSREQLVALLRAAAESSPATMAAVRRAAECDPASRKLFVHGLGWGAGVE 124
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
L SAF GE+E+C+++ DK +GK+KG+ F++F++R +A++AL+ PQ + R+A C L
Sbjct: 125 DLRSAFSRFGELEDCRVITDKQSGKSKGYGFVLFQSRTSALRALRRPQLSIGGRLAFCHL 184
Query: 182 ASVGPTGPGVKEQGAAAQG--------------------ERKIYVSNVPRDVEKEKLRGF 221
A+ GP P + Q ++ +RKI+V NV DV+ +L +
Sbjct: 185 AASGPAPPASQSQNPSSNASSGAANNSAPASSSSQADNMQRKIFVGNVHADVDVNRLYEY 244
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
F +FGEIE GP+GFD +TGK +GFA+FVYK+V+ AR+ALEEP + F+G L QKA +G+
Sbjct: 245 FSQFGEIEEGPLGFDKSTGKPKGFALFVYKSVDSARRALEEPMRSFDGKMLNVQKAIDGR 304
Query: 282 NR 283
+
Sbjct: 305 TK 306
>gi|242077350|ref|XP_002448611.1| hypothetical protein SORBIDRAFT_06g030090 [Sorghum bicolor]
gi|241939794|gb|EES12939.1| hypothetical protein SORBIDRAFT_06g030090 [Sorghum bicolor]
Length = 527
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 156/253 (61%), Gaps = 25/253 (9%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
I+ LLEP S++QL+ L+ AA P + A+ D + RK+FVHGLGW E L S
Sbjct: 71 IAKLLEPLSREQLVALLRTAAEASPATMAAVRRAAEADPASRKLFVHGLGWGAGAEDLRS 130
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
AF GE+E+C+++ DK +G++KG+ F++F++R++A++AL PQ ++ R+A C LA+ G
Sbjct: 131 AFSRFGELEDCRVISDKQSGRSKGYGFVLFRSRRSALRALSRPQLQIGGRLAFCHLAASG 190
Query: 186 PTGPGVKEQGAAAQG-------------------------ERKIYVSNVPRDVEKEKLRG 220
P P + Q ++ +RKI+V NV DV+ ++L
Sbjct: 191 PAPPASQSQNPSSNANTNANSSSNTTTNASGSSSSQPDNMQRKIFVGNVHADVDVDRLYE 250
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
+F +FGEIE GP+GFD TGK +GFA+FVY++ E AR+ALEEP K F+G L QKA +G
Sbjct: 251 YFAQFGEIEEGPLGFDKNTGKPKGFALFVYRSAESARRALEEPMKNFDGKTLNVQKAIDG 310
Query: 281 KNRTSSNSSSSNN 293
+ + SS ++++ N
Sbjct: 311 RTKGSSGANTNAN 323
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%)
Query: 191 VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
V+ A RK++V + E LR F RFGE+E + D +G+S+G+ ++
Sbjct: 101 VRRAAEADPASRKLFVHGLGWGAGAEDLRSAFSRFGELEDCRVISDKQSGRSKGYGFVLF 160
Query: 251 KTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQA 295
++ A +AL PQ G C AA G +S S + ++ A
Sbjct: 161 RSRRSALRALSRPQLQIGGRLAFCHLAASGPAPPASQSQNPSSNA 205
>gi|223948117|gb|ACN28142.1| unknown [Zea mays]
gi|414585220|tpg|DAA35791.1| TPA: hypothetical protein ZEAMMB73_646207 [Zea mays]
gi|414585221|tpg|DAA35792.1| TPA: hypothetical protein ZEAMMB73_646207 [Zea mays]
Length = 521
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 176/330 (53%), Gaps = 55/330 (16%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
I LLEP S++QL+ L+ AA P + + D + RK+FVHGLGW E L S
Sbjct: 71 IVKLLEPLSREQLVALLRTAAEASPATMAAVRRAVEADPASRKLFVHGLGWGAGAEDLRS 130
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
AF GE+E+C+++ DK +G++KG+ F++F++R++A++AL PQ ++ R+A C LA+ G
Sbjct: 131 AFSRFGELEDCRVISDKQSGRSKGYGFVLFRSRRSALRALNRPQLQIGGRLAFCHLAASG 190
Query: 186 PTGPGVKEQGAAAQG----------------------ERKIYVSNVPRDVEKEKLRGFFE 223
P P + + +RKI+V NV DV+ ++L +F
Sbjct: 191 PAPPAQSQNPISNANPNANSNSTSNASGSSSSQTDNIQRKIFVGNVHADVDVDRLYEYFA 250
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
+FGEIE GP+GFD TG+ +GFA+FVYK+VE AR+ALEEP K F+G L QKA +G+ +
Sbjct: 251 QFGEIEEGPLGFDKNTGRPKGFALFVYKSVESARRALEEPIKNFDGKTLNVQKAIDGRTK 310
Query: 284 TSSN---------SSSSNNQAQM-----------------------MIQKQQQPMLQ-GQ 310
SS +++S AQM M QQ ML G
Sbjct: 311 GSSGMNTNTNSNPTTASVVAAQMTAPSSVAISPYDASAYSATVVPDMSFAQQAAMLGLGA 370
Query: 311 QQGQGNEQEQVLAAMAAAQNLALFGQHPGM 340
QQ + +LA +AA QN A G P M
Sbjct: 371 QQQAFTQPNAMLAMIAAMQNPAALGMSPAM 400
>gi|168024548|ref|XP_001764798.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684092|gb|EDQ70497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 145/217 (66%), Gaps = 6/217 (2%)
Query: 64 ESISSLLEPYSKDQLIDLIA-AAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQES 122
E + L+EP++K+QL+DL+ AA +LH+ I + AD+D RKIFV GLGWDTT E+
Sbjct: 22 EDVKKLVEPFTKEQLMDLLENAALNHADVLHE-IRKLADKDPGHRKIFVRGLGWDTTTET 80
Query: 123 LLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182
L + F GE+EE +++DK TGK++GF F+ FK A ++LK P ++++ RM CQLA
Sbjct: 81 LKTVFSQFGEVEEGAVIMDKATGKSRGFGFVTFKHMDGAQRSLKEPSKRIDGRMTVCQLA 140
Query: 183 SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKS 242
S G ++ + +RKIYV NVP D+ ++L F +GEIE GP+GFD TG+S
Sbjct: 141 STGALQVNPNQEVS----QRKIYVGNVPLDLSADRLLALFAGYGEIEEGPLGFDKFTGRS 196
Query: 243 RGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279
RGFA+ +YKTVE A++AL EP K +G Q+ C+ AAE
Sbjct: 197 RGFALIIYKTVEAAKRALLEPIKTLDGIQMYCKLAAE 233
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 54/95 (56%)
Query: 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKA 259
G RKI+V + D E L+ F +FGE+E G + D TGKSRGF +K ++GA+++
Sbjct: 63 GHRKIFVRGLGWDTTTETLKTVFSQFGEVEEGAVIMDKATGKSRGFGFVTFKHMDGAQRS 122
Query: 260 LEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQ 294
L+EP K +G CQ A+ G + + N S +
Sbjct: 123 LKEPSKRIDGRMTVCQLASTGALQVNPNQEVSQRK 157
>gi|357166238|ref|XP_003580645.1| PREDICTED: uncharacterized protein LOC100844841 [Brachypodium
distachyon]
Length = 510
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/266 (39%), Positives = 159/266 (59%), Gaps = 32/266 (12%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
I+ LLEP S++QL+ L+ AA P + A+ D + RK+FVHGLGW E L S
Sbjct: 67 ITKLLEPLSREQLVALLRVAAETSPATMAAVRRAAETDPASRKLFVHGLGWGAGAEDLRS 126
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
AF G++E+C+++ DK +GK+KG+ F++F++R AA++AL+ PQ ++ R+A C LA+ G
Sbjct: 127 AFSRFGDLEDCRVISDKQSGKSKGYGFVLFRSRTAALRALRRPQLQIGGRIAFCHLAASG 186
Query: 186 -------------------PTGPGVKEQGAAAQGE------RKIYVSNVPRDVEKEKLRG 220
+ PG A RKI+V NV DV+ ++L
Sbjct: 187 PAPPSSQSQSQNPSSNNNANSNPGATNTAPATSSSQPDNMPRKIFVGNVHADVDVDRLYE 246
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
+F +FGEIE GP+GFD +TGK +GFA+FVYK+VE AR+ALEEP + F+G L QKA +G
Sbjct: 247 YFSQFGEIEEGPLGFDKSTGKPKGFALFVYKSVESARRALEEPMRNFDGKMLNIQKAIDG 306
Query: 281 K-------NRTSSNSSSSNNQAQMMI 299
+ N +++N +++ AQM +
Sbjct: 307 RTKGTPGMNTSAANPNATTASAQMAV 332
>gi|297830052|ref|XP_002882908.1| hypothetical protein ARALYDRAFT_478927 [Arabidopsis lyrata subsp.
lyrata]
gi|297328748|gb|EFH59167.1| hypothetical protein ARALYDRAFT_478927 [Arabidopsis lyrata subsp.
lyrata]
Length = 404
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 139/211 (65%), Gaps = 3/211 (1%)
Query: 69 LLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFG 128
++E ++ DQL+DL+ A + P + D + TAD D+SQRK+F+ GL DTT E LLS F
Sbjct: 37 IIERFTTDQLLDLLQEAIVRHPDVLDSVRSTADSDISQRKLFIRGLAADTTTEGLLSLFS 96
Query: 129 GSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTG 188
G++EE +++DKVTGK+KG+ F+ F A+ ALK P +K++ R+ QLA+ G G
Sbjct: 97 NYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQG 156
Query: 189 PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIF 248
G + A RKIYV+NVP D+ ++L F +G++E GP+GFD TGKSRGFA+F
Sbjct: 157 TGSQ---IADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALF 213
Query: 249 VYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279
VYKT EGA+ AL +P K+ +G L C+ A +
Sbjct: 214 VYKTAEGAQTALADPVKVIDGKHLNCKLAVD 244
>gi|302754726|ref|XP_002960787.1| hypothetical protein SELMODRAFT_163608 [Selaginella moellendorffii]
gi|300171726|gb|EFJ38326.1| hypothetical protein SELMODRAFT_163608 [Selaginella moellendorffii]
Length = 359
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 145/237 (61%), Gaps = 4/237 (1%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + LLEP SK+QL+ L+ A ++ P + D I + A +D + RK+FV GL W+TT ++L
Sbjct: 28 DDLKRLLEPLSKEQLVALLIDAGSQYPAVADDIRDVASKDPAHRKLFVRGLAWETTSQAL 87
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
AF GEIEE ++ DK TGK++GF FI FK +A +ALK P + ++ R+ C LAS
Sbjct: 88 RDAFQHYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALKEPSKTIDGRITVCNLAS 147
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
VG + G+A Q +RK+Y+ + + E L F ++GEIE G + +D T KSR
Sbjct: 148 VGSSAGA----GSADQAQRKLYIGGLSYETSNETLLNIFSQYGEIEEGAVAYDKNTNKSR 203
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQ 300
GFA YK+VE ARKA+++P K EG + + AAEG+ + + SS+ NQ +Q
Sbjct: 204 GFAFITYKSVEAARKAIDDPNKTIEGRHVIVKLAAEGQKEKAVSQSSAQNQGGPQVQ 260
>gi|115460844|ref|NP_001054022.1| Os04g0636900 [Oryza sativa Japonica Group]
gi|21741248|emb|CAD41732.1| OSJNBb0034I13.9 [Oryza sativa Japonica Group]
gi|113565593|dbj|BAF15936.1| Os04g0636900 [Oryza sativa Japonica Group]
gi|215715302|dbj|BAG95053.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764985|dbj|BAG86682.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 515
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 158/249 (63%), Gaps = 21/249 (8%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
I+ LLEP S++QL+ L+ AA P + A+ D + RK+FVHGLGW + L S
Sbjct: 73 IAKLLEPLSREQLVALLRTAAETTPATMAAVRRAAEADPASRKLFVHGLGWGAGADDLRS 132
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
AF GE+E+C+++ DK +G++KG+ F++F++R++A++AL+ PQ ++ R+A C LA+ G
Sbjct: 133 AFSRFGELEDCRVISDKQSGRSKGYGFVLFRSRRSALRALRRPQLQIGGRLAFCHLAASG 192
Query: 186 PTGPGVKEQGAAAQG---------------------ERKIYVSNVPRDVEKEKLRGFFER 224
P P + Q ++ +RKI+V NV DV+ ++L +F +
Sbjct: 193 PAPPTSQSQNPSSNTNANSGAANNAGSASSSQPDNMQRKIFVGNVHADVDVDRLYEYFSQ 252
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284
FGEIE GP+GFD TTGK +GFA+FVYK+VE AR+ALEEP + F+G L QKA +G+ +
Sbjct: 253 FGEIEEGPLGFDKTTGKPKGFALFVYKSVESARRALEEPTRNFDGKMLNVQKAIDGRTKN 312
Query: 285 SSNSSSSNN 293
+ ++++N
Sbjct: 313 TPGMNANSN 321
>gi|15232459|ref|NP_188119.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|42572443|ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|8777484|dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana]
gi|17380744|gb|AAL36202.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20259621|gb|AAM14167.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|222422941|dbj|BAH19456.1| AT3G15010 [Arabidopsis thaliana]
gi|332642081|gb|AEE75602.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332642082|gb|AEE75603.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 404
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 140/213 (65%), Gaps = 3/213 (1%)
Query: 69 LLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFG 128
++E ++ DQL+DL+ A + P + + + TAD D+SQRK+F+ GL DTT E L S F
Sbjct: 37 IIERFTTDQLLDLLQEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFS 96
Query: 129 GSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTG 188
G++EE +++DKVTGK+KG+ F+ F A+ ALK P +K++ R+ QLA+ G G
Sbjct: 97 SYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQG 156
Query: 189 PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIF 248
G + A RKIYV+NVP D+ ++L F +G++E GP+GFD TGKSRGFA+F
Sbjct: 157 TGSQ---IADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALF 213
Query: 249 VYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
VYKT EGA+ AL +P K+ +G L C+ A +GK
Sbjct: 214 VYKTAEGAQAALADPVKVIDGKHLNCKLAVDGK 246
>gi|255563118|ref|XP_002522563.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
gi|223538254|gb|EEF39863.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
Length = 398
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 148/232 (63%), Gaps = 1/232 (0%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ I ++EP++K+QL++++ AAT+ + + + AD D+S RK+F+ GL +TT E++
Sbjct: 32 QDIRKIIEPFTKEQLLEILQNAATRHADVLESVRTLADSDISLRKLFIRGLSSETTTETI 91
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ F GE+EE ++ DK TGK+KGF FI FK A+ ALK P +K++ RM QLAS
Sbjct: 92 RNLFNNYGELEEAIVIFDKNTGKSKGFGFITFKHVDGALIALKEPSKKIDGRMTVTQLAS 151
Query: 184 VGPTGPGVKEQGAAAQ-GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKS 242
G + + G + RKIYV NVP ++ E+L GFF +GE+E GP+GFD +TGKS
Sbjct: 152 AGLSNSSINSSGGGSDVSARKIYVGNVPYNIPSERLLGFFLNYGEVEEGPLGFDKSTGKS 211
Query: 243 RGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQ 294
+GFA +YKT EGA+ A+ +P KM +GHQ+ C+ A + ++ SS N
Sbjct: 212 KGFAFIIYKTEEGAKAAIADPVKMIDGHQVVCKMAVANNKKVKTHGSSGENN 263
>gi|224114692|ref|XP_002316830.1| predicted protein [Populus trichocarpa]
gi|222859895|gb|EEE97442.1| predicted protein [Populus trichocarpa]
Length = 369
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 165/302 (54%), Gaps = 21/302 (6%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E I ++EP++KDQL+D++ +A + + + AD D+S RK+F+ GL +TT E+L
Sbjct: 32 EEIRKIIEPFTKDQLLDILQSATLHHSDVLNSVRSVADGDISLRKLFIRGLSSETTSETL 91
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
F SGE+EE ++ DK TGK+KGF FI FK AA+ +++ P +K++ R+ QLAS
Sbjct: 92 RILFSSSGELEEAIVIHDKNTGKSKGFGFITFKHVDAAMLSIREPSKKIDGRITVTQLAS 151
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
RK+YV NVP +V E+L GFF +GEIE GP+GFD +TGKS+
Sbjct: 152 --------NNSSTTDVSLRKVYVGNVPFEVSSERLLGFFSMYGEIEEGPLGFDKSTGKSK 203
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQ 303
GFA +YK EGA+ A+ +P K +GHQ+ C+ AA+ + + N+Q + Q Q
Sbjct: 204 GFAFLIYKNEEGAKAAIADPMKNIDGHQVVCKFAADNRK------VNKNSQVGAITQTSQ 257
Query: 304 ---QPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGGFLVNPGLINPMVAG 360
P L G Q G + G + HP Y G +N G +N AG
Sbjct: 258 PLTYPPLTGNSQNYGPASTNSYQINTSMTGSGYNGSY--RHPPYLGAGLNDGGLN--NAG 313
Query: 361 AL 362
AL
Sbjct: 314 AL 315
>gi|449438887|ref|XP_004137219.1| PREDICTED: uncharacterized protein LOC101207569 [Cucumis sativus]
gi|449483196|ref|XP_004156519.1| PREDICTED: uncharacterized protein LOC101231665 [Cucumis sativus]
Length = 434
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 141/227 (62%), Gaps = 3/227 (1%)
Query: 51 CSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIF 110
SS S S E +++ ++ DQLID++ A ++ + D + ADRDVSQRK+F
Sbjct: 14 VDSSESSFSRITPEDARKIIDRFTPDQLIDILQDAVSRHLDVLDAVRSIADRDVSQRKLF 73
Query: 111 VHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR 170
+ GL DT+ E L S F GE+EE ++IDK TGK+KG+ F+ FK A+ ALK P +
Sbjct: 74 IRGLSCDTSTEGLRSLFSSYGELEEAVVIIDKATGKSKGYGFVTFKHVDGALLALKEPSK 133
Query: 171 KVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIET 230
++ R+ QLA+VG +G + AA RKIYV+NVP D+ +KL F +GEIE
Sbjct: 134 TIDGRVTVTQLAAVGISG---QNSNAADLSLRKIYVANVPMDMPADKLLAHFSLYGEIEE 190
Query: 231 GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
GP+GFD TGK RG+A+FVYK EGA+ AL +P K +G QL C+ A
Sbjct: 191 GPLGFDKQTGKCRGYALFVYKKPEGAQAALVDPIKTIDGRQLSCKFA 237
>gi|293332727|ref|NP_001168409.1| uncharacterized protein LOC100382178 [Zea mays]
gi|223948081|gb|ACN28124.1| unknown [Zea mays]
gi|413950595|gb|AFW83244.1| hypothetical protein ZEAMMB73_012333 [Zea mays]
Length = 448
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 140/224 (62%), Gaps = 6/224 (2%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E + LLEP S+DQL D+ AAAA D + ADRD + RK+F+ GLGW+TT +SL
Sbjct: 32 EDVLRLLEPLSRDQLADIAAAAALVSAHALDAVRAAADRDPALRKLFIRGLGWETTSDSL 91
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ F G++EE ++ DK TG++KG+ F+ F+ +AV ALK P +K++ RM QLA+
Sbjct: 92 RAIFSAYGDLEEAVVITDKSTGRSKGYGFVTFRHADSAVLALKEPSKKIDGRMTVTQLAA 151
Query: 184 VGPTG------PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDI 237
G G PG A RKI+V NVP D+ E+L F +GEIE GP+GFD
Sbjct: 152 AGSAGGPSVGAPGSGGAPVADVSLRKIFVGNVPADMSSERLLAHFASYGEIEEGPLGFDK 211
Query: 238 TTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
TGK RGFA+FVYKT EGA+ +L + K+ + HQL C+ A +GK
Sbjct: 212 QTGKFRGFALFVYKTPEGAQASLVDSVKVIDSHQLVCKLAIDGK 255
>gi|356502762|ref|XP_003520185.1| PREDICTED: uncharacterized protein LOC100816590 [Glycine max]
Length = 384
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 144/219 (65%), Gaps = 7/219 (3%)
Query: 63 SESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQES 122
SE I +L+P+S++QL+DL+ +A+ + P + D + AD D + RK+FV GL +TT E+
Sbjct: 43 SEDIRKILQPFSQEQLLDLLQSASLRHPDVLDAVRAVADCDSTLRKLFVRGLAGETTTET 102
Query: 123 LLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182
L S F G GE++E +++DK TG++KG+ F+VF+ A+ ALK+P +K++ RM QLA
Sbjct: 103 LRSVFSGFGELDEAIVIMDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLA 162
Query: 183 SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKS 242
+ G RK++V NVP ++ E+L F +FGE+E GP+GFD ++GKS
Sbjct: 163 A-------AGGPGGGDVSLRKVFVGNVPFEISSERLLDEFLKFGEVEEGPLGFDKSSGKS 215
Query: 243 RGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
RGFA FVYKT EGAR +L EP K EGHQ+ C+ A + K
Sbjct: 216 RGFAFFVYKTEEGARASLVEPLKTIEGHQVICKLAVDNK 254
>gi|357475705|ref|XP_003608138.1| Heterogeneous nuclear ribonucleoprotein A3-like protein [Medicago
truncatula]
gi|355509193|gb|AES90335.1| Heterogeneous nuclear ribonucleoprotein A3-like protein [Medicago
truncatula]
Length = 401
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 143/219 (65%), Gaps = 8/219 (3%)
Query: 63 SESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQES 122
S+ I +L+P++++QL+DL+ +A+ + P + D + ADRD ++RK+FV GL +TT E+
Sbjct: 32 SDDIRKILQPFTQEQLLDLLQSASLQHPDILDAVRSVADRDTTRRKLFVRGLSGETTTET 91
Query: 123 LLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182
L + F G+++E ++ DK TG++KG+ F+V++ AV ALK P +K++ RM QLA
Sbjct: 92 LRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKEPSKKIDGRMTVTQLA 151
Query: 183 SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKS 242
+ G TG V RK++V NVP +V E L F ++GEIE GP+GFD +GK+
Sbjct: 152 AAGSTGGDVS--------SRKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKT 203
Query: 243 RGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
RGFA FVYKT EGA+ ++ E K +GHQ+ C+ A + K
Sbjct: 204 RGFAFFVYKTEEGAKNSVAESMKTVDGHQVICKFAVDNK 242
>gi|224061320|ref|XP_002300424.1| predicted protein [Populus trichocarpa]
gi|222847682|gb|EEE85229.1| predicted protein [Populus trichocarpa]
Length = 310
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 150/242 (61%), Gaps = 15/242 (6%)
Query: 50 SCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKI 109
S ++ +S + + ++E ++ DQL+D++ A + P + + + AD D +QRK+
Sbjct: 16 SSTTDLDSPYKLTPQDARKMMERFTPDQLLDILQNAVVRHPDILEAVRSIADPDATQRKL 75
Query: 110 FVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ 169
F+ GLGW+TT E+L + F GE+EE +++DK TGK+KG+ F+++K A+ ALK P
Sbjct: 76 FIRGLGWETTTENLRNLFSTYGELEEAVVILDKNTGKSKGYGFVIYKHVDGALLALKEPS 135
Query: 170 RKVNNRMASCQLA----------SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
+K++ R+ QLA + PGV + RKIYV+NVP ++ +KL
Sbjct: 136 KKIDGRVTVTQLAIAGNSGANNNNNSSANPGVVDVAM-----RKIYVANVPYEMPSDKLL 190
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279
F ++GEIE GP+GFD TGKS+GFA+FVYKT EGA+ AL EP KM EG QL C+ A +
Sbjct: 191 NHFAQYGEIEEGPLGFDKQTGKSKGFALFVYKTAEGAQAALLEPVKMIEGRQLNCKLAID 250
Query: 280 GK 281
GK
Sbjct: 251 GK 252
>gi|302788860|ref|XP_002976199.1| hypothetical protein SELMODRAFT_151090 [Selaginella moellendorffii]
gi|300156475|gb|EFJ23104.1| hypothetical protein SELMODRAFT_151090 [Selaginella moellendorffii]
Length = 343
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 134/218 (61%), Gaps = 4/218 (1%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + LLEP SK+QL+ L+ A ++ + D I E A +D + RK+FV GL W+TT + L
Sbjct: 37 DDLKRLLEPLSKEQLVALLTDAGSQYSAVADDIREVASKDPAHRKLFVRGLAWETTSQDL 96
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
AF GEIEE ++IDK TGK++GF FI FK +A +ALK P + ++ R+ C LAS
Sbjct: 97 RDAFEQFGEIEEGAVIIDKATGKSRGFGFITFKHMDSAQRALKEPSKTIDGRITVCNLAS 156
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
VG +G G G Q +RK+Y+ + + E L F ++GEIE G + +D T KSR
Sbjct: 157 VGTSGSG----GTNDQAQRKLYIGGLSYETSNETLLNIFSKYGEIEEGAVAYDKNTNKSR 212
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
GFA YKTVE AR A+++P K EG + + AAEG+
Sbjct: 213 GFAFVTYKTVEAARNAIDDPNKTIEGRHVIVKLAAEGQ 250
>gi|379061692|gb|AFC89654.1| RBP42 [Elaeis guineensis]
Length = 413
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 138/218 (63%), Gaps = 3/218 (1%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E ++EP++++ L+D++ A + + D + ADRD +QRK+F+ GLGW+TT ESL
Sbjct: 26 EDARKIVEPFTREHLLDIVREAMCRDAGVLDAVRAIADRDPAQRKLFIRGLGWETTTESL 85
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ F GE+EE +++DK TGK+KG+ FI F+ A+ ALK P +K++ RM QLA+
Sbjct: 86 RNLFSSYGELEEAVVIVDKATGKSKGYGFITFRHIDGALLALKEPSKKIDGRMTVTQLAA 145
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
G T + RKIYV NVP D+ ++L F +GEIE GP+GFD TGK R
Sbjct: 146 AGTTAAAPPAIDVSL---RKIYVGNVPADMPSDRLLAHFSSYGEIEEGPLGFDKQTGKFR 202
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
GFA+FVYKT EGA +L +P K +GH L C+ A +GK
Sbjct: 203 GFALFVYKTAEGAGASLVDPTKNIDGHHLVCKLAIDGK 240
>gi|297853100|ref|XP_002894431.1| hypothetical protein ARALYDRAFT_892356 [Arabidopsis lyrata subsp.
lyrata]
gi|297340273|gb|EFH70690.1| hypothetical protein ARALYDRAFT_892356 [Arabidopsis lyrata subsp.
lyrata]
Length = 420
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 139/217 (64%), Gaps = 10/217 (4%)
Query: 69 LLEPYSKDQLIDLIAAAATKIPLLHDHILE----TADRDVSQRKIFVHGLGWDTTQESLL 124
++E +S DQL+D++ A + H +LE TAD D+SQRK+F+ GL +TT E L
Sbjct: 37 IIERFSTDQLLDILQEAVVR----HTDVLEIVRLTADSDISQRKLFIRGLAAETTTEGLR 92
Query: 125 SAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASV 184
S F G+++E +++DKVT K+KG+ F+ FK A+ ALK P +K++ R+ QLA+
Sbjct: 93 SLFSNYGDLDEAIVILDKVTAKSKGYGFVTFKHVDGALLALKEPSKKIDGRVTVTQLAAA 152
Query: 185 GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRG 244
G G + RKIYV+NVP D+ ++L F +G+IE GP+GFD TGKSRG
Sbjct: 153 G--NQGTTNSHVSDISMRKIYVANVPFDMPADRLLNQFLAYGDIEEGPLGFDKITGKSRG 210
Query: 245 FAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
FA+FVYKT EGA+ AL EP K+ +G LQC+ A +GK
Sbjct: 211 FALFVYKTAEGAQAALAEPMKVVDGKNLQCKLAIDGK 247
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D+S RKI+V + +D + LL+ F G+IEE L DK+TGK++GFA V+KT + A
Sbjct: 164 DISMRKIYVANVPFDMPADRLLNQFLAYGDIEEGPLGFDKITGKSRGFALFVYKTAEGAQ 223
Query: 163 KALKNPQRKVNNRMASCQLASVGPTG 188
AL P + V+ + C+LA G G
Sbjct: 224 AALAEPMKVVDGKNLQCKLAIDGKKG 249
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+RK+++ + + E LR F +G+++ + D T KS+G+ +K V+GA AL
Sbjct: 74 QRKLFIRGLAAETTTEGLRSLFSNYGDLDEAIVILDKVTAKSKGYGFVTFKHVDGALLAL 133
Query: 261 EEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSN 292
+EP K +G Q AA G N+ ++NS S+
Sbjct: 134 KEPSKKIDGRVTVTQLAAAG-NQGTTNSHVSD 164
>gi|356545259|ref|XP_003541062.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 437
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 145/240 (60%), Gaps = 7/240 (2%)
Query: 55 SESESEPESESISS---LLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFV 111
+ SEP S S L+E ++ DQL+D++ + P + + +D DVSQRK+F+
Sbjct: 16 NNDSSEPLKLSPSDARKLIERFTTDQLLDILQDTVARHPDVLAAVRAVSDPDVSQRKLFI 75
Query: 112 HGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK 171
GLGWDTT + L S F G++EE +++DK TGK+KG+ F+ F+ A+ AL+ P ++
Sbjct: 76 RGLGWDTTTDGLRSLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKR 135
Query: 172 VNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETG 231
++ R+ QLA+ G + A RKIYV+NVP D+ +KL F +GEIE G
Sbjct: 136 IDGRVTVTQLAAAGNS---ALNANAVDVALRKIYVANVPPDLPADKLLAHFSVYGEIEEG 192
Query: 232 PIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA-AEGKNRTSSNSSS 290
P+GFD TGKS+GFA+FVYK+ EGA+ AL +P K EG QL C+ A +GK S S
Sbjct: 193 PLGFDKQTGKSKGFALFVYKSPEGAKAALIDPMKTVEGRQLSCKLAITDGKQGKRSGPDS 252
>gi|356517062|ref|XP_003527209.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 425
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 139/217 (64%), Gaps = 4/217 (1%)
Query: 66 ISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLS 125
+ L+E ++ DQL+D++ A + + + AD DVSQRK+F+ GLGWDTT + L S
Sbjct: 30 VRKLIERFTSDQLLDILQDAVARHLDVLAAVRAVADPDVSQRKLFIRGLGWDTTTDGLRS 89
Query: 126 AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
F G++EE +++DK TGK+KG+ F+ F+ A+ AL+ P ++++ R+ QLA+ G
Sbjct: 90 LFSTFGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAG 149
Query: 186 PTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGF 245
+ V A RKIYV+NVP D+ +KL F +GEIE GP+GFD TGKS+GF
Sbjct: 150 NSASNVNPADVAL---RKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGF 206
Query: 246 AIFVYKTVEGARKALEEPQKMFEGHQLQCQKA-AEGK 281
A+FVYK+ EGA+ AL +P K EG QL C+ A +GK
Sbjct: 207 ALFVYKSPEGAQAALIDPVKTVEGRQLSCKLAITDGK 243
>gi|242062238|ref|XP_002452408.1| hypothetical protein SORBIDRAFT_04g025205 [Sorghum bicolor]
gi|241932239|gb|EES05384.1| hypothetical protein SORBIDRAFT_04g025205 [Sorghum bicolor]
Length = 369
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 146/234 (62%), Gaps = 6/234 (2%)
Query: 50 SCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKI 109
S + E SE + E I LLEP+++D+L+DL+ A + P L + +A D + R+I
Sbjct: 41 SAAVECEEVSEADEEDIGRLLEPFTRDELLDLLTDACLRDPALLARVAASAVSDAAHRRI 100
Query: 110 FVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ 169
FVHGLG T +L +AF G ++EC V D+ TG+ +G+ F+ F+ R A +AL +
Sbjct: 101 FVHGLGPGATSAALAAAFVPFGALDECHAVADRATGRCRGYGFVTFRRRSDACRALADSS 160
Query: 170 RKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIE 229
++V+ R +CQLAS+GP P A++ +RK++V NVP ++ LR F +FGEIE
Sbjct: 161 KRVDGRPVACQLASLGPAAP------ASSFSDRKLFVDNVPERAGRDDLRELFSKFGEIE 214
Query: 230 TGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
GP+G D TG RG+AIFVYKT EG RKAL+EP K+F+G +L C+ A + R
Sbjct: 215 EGPLGSDRATGLFRGYAIFVYKTPEGLRKALDEPTKVFDGCELHCRLAHRARKR 268
>gi|224076982|ref|XP_002305079.1| predicted protein [Populus trichocarpa]
gi|222848043|gb|EEE85590.1| predicted protein [Populus trichocarpa]
Length = 384
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 148/247 (59%), Gaps = 10/247 (4%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E I +LEP++KDQL+D++ +A + + + AD D+S RK+F+ GL +TT ++L
Sbjct: 32 EEIRKILEPFTKDQLLDILQSATLHHSDILNSVRSVADGDISLRKLFIRGLSSETTSDTL 91
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
F GE+EE ++ DK TGK+KGF FI FK +A+ +++ P +K++ R+ QLAS
Sbjct: 92 RILFSSFGELEEAIVIHDKNTGKSKGFGFITFKHVDSAMLSIREPSKKIDGRITVTQLAS 151
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
RK+YV NVP ++ E+L GFF +GEIE GP+GFD +TGKS+
Sbjct: 152 --------NNSSTGDVSLRKVYVGNVPFEITSERLLGFFSMYGEIEEGPLGFDKSTGKSK 203
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK--NRTSSNSSSSNNQAQMMIQK 301
GFA +YK+ +GA+ A+ +P K +GHQ+ C+ A + K N+TS +++ N +
Sbjct: 204 GFAFLIYKSEDGAKAAIADPMKNIDGHQVVCKLAVDNKRVNKTSQGGANAQNSQPLAHPS 263
Query: 302 QQQPMLQ 308
QP Q
Sbjct: 264 FPQPQPQ 270
>gi|356521446|ref|XP_003529367.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Glycine max]
Length = 384
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 139/218 (63%), Gaps = 7/218 (3%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E I +L+P+S++QL+DL+ +A+ + P + D + AD D + RK+FV GL +TT E+L
Sbjct: 40 EDIRKILQPFSQEQLLDLLQSASLRHPDVLDAVRAVADLDSTLRKLFVRGLAGETTTETL 99
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
F GE++E ++IDK TG++KG+ F+VF A+ ALK P +K++ RM QLA+
Sbjct: 100 RGVFSAFGELDEAIVIIDKATGRSKGYGFVVFSHVDGAILALKEPSKKIDGRMTVTQLAA 159
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
G RK++V NVP ++ E+L F +FGE+E GP+GFD ++GKSR
Sbjct: 160 -------AGGPGGGDVSLRKVFVGNVPFEISSERLLDEFLKFGEVEEGPLGFDKSSGKSR 212
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
GFA FVYKT EGAR +L EP K EGHQ+ C+ A + K
Sbjct: 213 GFAFFVYKTEEGARASLVEPLKTIEGHQVICKLAVDNK 250
>gi|242058013|ref|XP_002458152.1| hypothetical protein SORBIDRAFT_03g027820 [Sorghum bicolor]
gi|241930127|gb|EES03272.1| hypothetical protein SORBIDRAFT_03g027820 [Sorghum bicolor]
Length = 445
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 138/234 (58%), Gaps = 6/234 (2%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + LLEP S+DQL D+ AAAA D + ADRD + RK+FV GLGW+TT +SL
Sbjct: 32 DDVLRLLEPLSRDQLADIAAAAALVSAHALDAVRAAADRDPALRKLFVRGLGWETTSDSL 91
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL-- 181
+ F G++EE ++ DK TG++KG+ F+ F+ +AV ALK P +K++ RM QL
Sbjct: 92 RAIFSAYGDLEEAVVITDKTTGRSKGYGFVTFRHADSAVLALKEPSKKIDGRMTVTQLAA 151
Query: 182 ----ASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDI 237
G A RKI+V NVP D+ E+L F +GEIE GP+GFD
Sbjct: 152 AGSAGGPSGGAAGSGGAPVADVALRKIFVGNVPADMPSERLLAHFASYGEIEEGPLGFDK 211
Query: 238 TTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSS 291
TGK RGFA+FVYKT EGA+ +L + K+ +GHQL C+ A EGK S S
Sbjct: 212 QTGKFRGFALFVYKTPEGAQASLVDTVKVIDGHQLVCKLAIEGKKAKQGQSQQS 265
>gi|116787064|gb|ABK24360.1| unknown [Picea sitchensis]
Length = 365
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 146/247 (59%), Gaps = 13/247 (5%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + SLLEP SK+QLI L+ A + P + + I + A +D + RK+FV GL W+T+ ++L
Sbjct: 26 DHLHSLLEPLSKEQLISLLVDAGSSYPAIAEEIKDVASKDPAHRKLFVRGLAWETSSQTL 85
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
AF GEIEE +++DK +GK++GF F+ FK +A KALK P + ++ R+ LA
Sbjct: 86 CDAFEQYGEIEEGAVIMDKASGKSRGFGFVTFKHMDSAQKALKEPSKTIDGRITVSNLA- 144
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
V TGPG +A Q +RK+Y+ + D +KL F ++GEIE G + +D T KSR
Sbjct: 145 VASTGPGQ----SADQAQRKLYIGGLSYDTANDKLLEVFSKYGEIEEGSVAYDKNTNKSR 200
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQ 303
GFA +KTVE ++AL+EP K +G + + AA+G+ Q+Q + Q
Sbjct: 201 GFAFVTFKTVEATKRALKEPNKTIDGRTVTVKLAADGQKE--------KPQSQPAVSPQM 252
Query: 304 QPMLQGQ 310
QP+ Q Q
Sbjct: 253 QPIPQLQ 259
>gi|212275065|ref|NP_001130367.1| uncharacterized protein LOC100191462 [Zea mays]
gi|194688948|gb|ACF78558.1| unknown [Zea mays]
Length = 424
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 160/300 (53%), Gaps = 55/300 (18%)
Query: 96 ILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
+ + D + RK+FVHGLGW E L SAF GE+E+C+++ DK +G++KG+ F++F
Sbjct: 4 VRRAVEADPASRKLFVHGLGWGAGAEDLRSAFSRFGELEDCRVISDKQSGRSKGYGFVLF 63
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQG--------------- 200
++R++A++AL PQ ++ R+A C LA+ GP P + +
Sbjct: 64 RSRRSALRALNRPQLQIGGRLAFCHLAASGPAPPAQSQNPISNANPNANSNSTSNASGSS 123
Query: 201 -------ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTV 253
+RKI+V NV DV+ ++L +F +FGEIE GP+GFD TG+ +GFA+FVYK+V
Sbjct: 124 SSQTDNIQRKIFVGNVHADVDVDRLYEYFAQFGEIEEGPLGFDKNTGRPKGFALFVYKSV 183
Query: 254 EGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN---------SSSSNNQAQM------- 297
E AR+ALEEP K F+G L QKA +G+ + SS +++S AQM
Sbjct: 184 ESARRALEEPIKNFDGKTLNVQKAIDGRTKGSSGMNTNTNSNPTTASVVAAQMTAPSSVA 243
Query: 298 ----------------MIQKQQQPMLQ-GQQQGQGNEQEQVLAAMAAAQNLALFGQHPGM 340
M QQ ML G QQ + +LA +AA QN A G P M
Sbjct: 244 ISPYDASAYSATVVPDMSFAQQAAMLGLGAQQQAFTQPNAMLAMIAAMQNPAALGMSPAM 303
>gi|414881835|tpg|DAA58966.1| TPA: heterogeneous nuclear ribonucleoprotein A3-like protein 2
isoform 1 [Zea mays]
gi|414881836|tpg|DAA58967.1| TPA: heterogeneous nuclear ribonucleoprotein A3-like protein 2
isoform 2 [Zea mays]
Length = 447
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/245 (42%), Positives = 146/245 (59%), Gaps = 9/245 (3%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + LLEP S+DQL D+ AAAA D + ADRD + RK+FV GLGW+TT +SL
Sbjct: 32 DDVIRLLEPLSRDQLADIAAAAALVSSQALDAVRAAADRDPALRKLFVRGLGWETTSDSL 91
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ F G++EE ++ DK TG++KG+ F+ F+ +AV ALK P +K++ RM QLA+
Sbjct: 92 RAIFSAYGDLEEAVVITDKPTGRSKGYGFVTFRHADSAVLALKEPSKKIDGRMTVTQLAA 151
Query: 184 VGPTGPGVKEQGAAAQGE------RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDI 237
G G + RKI+V NVP D+ E+L F +GEIE GP+GFD
Sbjct: 152 AGSAGGPAGGPAGSGGAPVSDVSLRKIFVGNVPADMASERLLAHFASYGEIEEGPLGFDK 211
Query: 238 TTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNS---SSSNNQ 294
TGK RGFA+FVYKT EGA+ +L + K+ +GHQL C+ A +GK S N+Q
Sbjct: 212 QTGKFRGFALFVYKTPEGAQASLVDTVKVIDGHQLVCKLALDGKKEKQGQSQQPGPGNHQ 271
Query: 295 AQMMI 299
Q ++
Sbjct: 272 QQQIL 276
>gi|148910248|gb|ABR18205.1| unknown [Picea sitchensis]
Length = 382
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 7/224 (3%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E +L+E +SKD+L +++ A K + + A +D ++RK+FV GLGW T E+L
Sbjct: 112 EDAETLMETFSKDELAEILKLALKKHGDIVSEVANVASKDSAKRKLFVRGLGWHTKPETL 171
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
S F GE+E+ +V+D+ +GK+KGF F+ FK+ V ALK P +K+++RM C L S
Sbjct: 172 NSVFSAYGEVEKADIVMDRNSGKSKGFGFVTFKSFAGVVAALKEPSKKIDDRMTVCNL-S 230
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
G + P ++ RKIYV +P DV+ KL F ++GEIE GP+GFD TGKS+
Sbjct: 231 TGVSAPDSQQVHG-----RKIYVGGLPNDVDSAKLVKLFSQYGEIEEGPLGFDKKTGKSK 285
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
GFA F+YK+ + A AL+EP K F+G L C K A KN + N
Sbjct: 286 GFAFFIYKSEKSANNALDEPMKTFDGATLTC-KLAPPKNTKNKN 328
>gi|226504174|ref|NP_001150933.1| heterogeneous nuclear ribonucleoprotein A3-like protein 2 [Zea
mays]
gi|195643046|gb|ACG40991.1| heterogeneous nuclear ribonucleoprotein A3-like protein 2 [Zea
mays]
Length = 447
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 140/231 (60%), Gaps = 6/231 (2%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + LLEP S+DQL D+ AAAA D + ADRD + RK+FV GLGW+TT +SL
Sbjct: 32 DDVIRLLEPLSRDQLADIAAAAALVSSQALDAVRAAADRDPALRKLFVRGLGWETTSDSL 91
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ F G++EE ++ DK TG++KG+ F+ F+ +AV ALK P +K++ RM QLA+
Sbjct: 92 RAIFSAYGDLEEAVVITDKPTGRSKGYGFVTFRHADSAVLALKEPSKKIDGRMTVTQLAA 151
Query: 184 VGPTGPGVKEQGAAAQGE------RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDI 237
G G + RKI+V NVP D+ E+L F +GEIE GP+GFD
Sbjct: 152 AGSAGGPAGGPAGSGGAPVSDVSLRKIFVGNVPADMASERLLAHFASYGEIEEGPLGFDK 211
Query: 238 TTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNS 288
TGK RGFA+FVYKT EGA+ +L + K+ +GHQL C+ A +GK S
Sbjct: 212 QTGKFRGFALFVYKTPEGAQASLVDTVKVIDGHQLVCKLALDGKKEKQGQS 262
>gi|116779627|gb|ABK21372.1| unknown [Picea sitchensis]
Length = 265
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 133/218 (61%), Gaps = 7/218 (3%)
Query: 70 LEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGG 129
+E +SKD+L +++ A K + + A +D ++RK+FV GLGW T E+L S F
Sbjct: 1 METFSKDELAEILKLALKKHGDIVSEVANVASKDSAKRKLFVRGLGWHTKPETLNSVFSA 60
Query: 130 SGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGP 189
GE+E+ +V+D+ +GK+KGF F+ FK+ V ALK P +K+++RM C L++
Sbjct: 61 YGEVEKADIVMDRNSGKSKGFGFVTFKSFAGVVAALKEPSKKIDDRMTVCNLST------ 114
Query: 190 GVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFV 249
GV + RKIYV +P DV+ KL F ++GEIE GP+GFD TGKS+GFA F+
Sbjct: 115 GVSAPDSQQVHGRKIYVGGLPNDVDSAKLVKLFSQYGEIEEGPLGFDKKTGKSKGFAFFI 174
Query: 250 YKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
YK+ + A AL+EP K F+G L C K A KN + N
Sbjct: 175 YKSEKSANNALDEPMKTFDGATLTC-KLAPPKNTKNKN 211
>gi|302754808|ref|XP_002960828.1| hypothetical protein SELMODRAFT_70937 [Selaginella moellendorffii]
gi|300171767|gb|EFJ38367.1| hypothetical protein SELMODRAFT_70937 [Selaginella moellendorffii]
Length = 251
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 134/230 (58%), Gaps = 11/230 (4%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
+S + LLEP + + ++ + + P + + + DRD + RK+FV GLGWDTT E
Sbjct: 22 DSADVLKLLEPLDRGAMHYILQISCLQHPAVLEEVRRYVDRDPAHRKLFVRGLGWDTTAE 81
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
+L F SGE++E ++ DK T K++GF F+ FK A++ALK P ++++ RM +CQ
Sbjct: 82 TLKGVFSQSGEVDEAVIIRDKATQKSRGFGFVSFKHMDGALRALKEPSKRIDGRMTACQF 141
Query: 182 A-------SVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFFERFGEIET 230
A P + E RKIYV +VP +K+ F +FGEI
Sbjct: 142 ASTSSSSTPCSSITPSINPPPPRPFIEDVSTRKIYVGSVPVGTSADKVLAIFSQFGEIAE 201
Query: 231 GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
GP+GFD +TG S+GFA+ +Y+T EGARKAL +P K +GHQ+ C+ AAEG
Sbjct: 202 GPLGFDRSTGASKGFALIIYRTSEGARKALLDPFKTIDGHQVHCKLAAEG 251
>gi|224137878|ref|XP_002322674.1| predicted protein [Populus trichocarpa]
gi|222867304|gb|EEF04435.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 139/233 (59%), Gaps = 4/233 (1%)
Query: 52 SSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFV 111
S++ E+ + + SLL+P +K QL+DL++ ++ P + + I A D RK+FV
Sbjct: 13 SNNGSGETSTTQDYLRSLLDPLNKSQLVDLLSRLGSQYPSIAEEIKGLASADPVHRKLFV 72
Query: 112 HGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK 171
GL W+TT E+L +AF GEIEE ++ DK TGK++G+ FI +K ++A AL P R
Sbjct: 73 RGLAWNTTSETLCAAFQMHGEIEEGAVIYDKATGKSRGYGFITYKHMESAQSALGAPSRL 132
Query: 172 VNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETG 231
+++RMA C LA G TG A +RK+YV + ++ E L FF R+G+IE G
Sbjct: 133 IDSRMAVCNLACEGLTGASTTPDLA----QRKLYVGGLSPEISSEMLLNFFGRYGDIEEG 188
Query: 232 PIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284
+ +D T +SRGF YKTVE A+KA+++P K+F G + + A +++T
Sbjct: 189 SVAYDKDTNESRGFGFVTYKTVEAAKKAIDDPHKLFGGRTIIVKLADTHRSKT 241
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQ----GAAAQGERKIYVSNVPRD 212
T + +++L +P +N L+ +G P + E+ +A RK++V + +
Sbjct: 22 TTQDYLRSLLDP---LNKSQLVDLLSRLGSQYPSIAEEIKGLASADPVHRKLFVRGLAWN 78
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
E L F+ GEIE G + +D TGKSRG+ YK +E A+ AL P ++ +
Sbjct: 79 TTSETLCAAFQMHGEIEEGAVIYDKATGKSRGYGFITYKHMESAQSALGAPSRLIDSRMA 138
Query: 273 QCQKAAEGKNRTSSN 287
C A EG S+
Sbjct: 139 VCNLACEGLTGASTT 153
>gi|357135512|ref|XP_003569353.1| PREDICTED: uncharacterized protein LOC100825606 [Brachypodium
distachyon]
Length = 448
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 147/251 (58%), Gaps = 8/251 (3%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + LLEP S+DQL D+ AAAA + D + ADRD + RK+FV GLGW+T +SL
Sbjct: 32 DDVLRLLEPLSRDQLADIAAAAALASGVALDAVRAAADRDPALRKLFVRGLGWETNSDSL 91
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ F G++EE ++ DK TG++KG+ F+ F+ +AV ALK P +K++ RM QLA+
Sbjct: 92 RTIFSAYGDLEEAVVISDKSTGRSKGYGFVTFRHADSAVLALKEPSKKIDGRMTVTQLAA 151
Query: 184 VGPTGPGVKEQGAAAQGE------RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDI 237
G G A RKI+V NVP D+ E+L F +GEIE GP+GFD
Sbjct: 152 AGAAGGPSGGTAGAGGAPAADVSLRKIFVGNVPADMSSERLLAHFASYGEIEEGPLGFDK 211
Query: 238 TTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK--NRTSSNSSSSNNQA 295
TGK RGFA+FVYKT +GA+ +L + K EGHQL C+ A EGK + S + Q
Sbjct: 212 QTGKFRGFALFVYKTPDGAQASLVDSIKTIEGHQLVCKLAIEGKKGKQQPQQSGPAGQQQ 271
Query: 296 QMMIQKQQQPM 306
M+Q Q M
Sbjct: 272 PQMLQGGPQEM 282
>gi|225441409|ref|XP_002278602.1| PREDICTED: DAZ-associated protein 1-like [Vitis vinifera]
Length = 355
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 129/220 (58%), Gaps = 4/220 (1%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E + LL+P SK QL+DL++ ++ P + + I A D RK+FV GL W+TT E+L
Sbjct: 35 EELKLLLDPLSKSQLVDLLSKLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETL 94
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+AF GEIEE +++DK TGK++G+ FI +K ++ AL+ P + ++ RMA C LA
Sbjct: 95 CAAFRLHGEIEEGAVIVDKTTGKSRGYGFITYKHMESTQSALQAPSKLIDGRMAVCNLAC 154
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
G +G Q +RK+Y+ + DV E L FF R GEIE G + +D T +SR
Sbjct: 155 EGLSGASTTPD----QAQRKLYIGGLAPDVTSEVLLSFFGRHGEIEEGSVAYDKETNESR 210
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
GF YKTVE A+KA+++PQK G + + A K +
Sbjct: 211 GFGFVTYKTVEAAKKAIDDPQKFLGGRSIIVKLADSHKGK 250
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 191 VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
+K +A RK++V + + E L F GEIE G + D TTGKSRG+ Y
Sbjct: 67 IKSVASADPVHRKLFVRGLAWNTTSETLCAAFRLHGEIEEGAVIVDKTTGKSRGYGFITY 126
Query: 251 KTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQ 296
K +E + AL+ P K+ +G C A EG S +S++ +QAQ
Sbjct: 127 KHMESTQSALQAPSKLIDGRMAVCNLACEGL----SGASTTPDQAQ 168
>gi|302804178|ref|XP_002983841.1| hypothetical protein SELMODRAFT_45421 [Selaginella moellendorffii]
gi|300148193|gb|EFJ14853.1| hypothetical protein SELMODRAFT_45421 [Selaginella moellendorffii]
Length = 251
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 134/230 (58%), Gaps = 11/230 (4%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
+S + LLEP + + ++ + + P + + + DRD + RK+FV GLGWDTT E
Sbjct: 22 DSADVLKLLEPLDRGAMHYILQISCLQHPAVLEEVRRYVDRDPAHRKLFVRGLGWDTTTE 81
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
+L F SGE++E ++ DK T K++GF F+ FK A++ALK P ++++ RM +CQ
Sbjct: 82 TLKGVFSQSGEVDEAVIIRDKATQKSRGFGFVSFKHMDGALRALKEPSKRIDGRMTACQF 141
Query: 182 A-------SVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFFERFGEIET 230
A P + E RKIYV +VP +K+ F +FGEI
Sbjct: 142 ASTSSSSTPCSSITPSMNPPPPRPFIEDVSTRKIYVGSVPVGTSADKVLAIFSQFGEIAE 201
Query: 231 GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
GP+GFD +TG S+GFA+ +++T EGARKAL +P K +GHQ+ C+ AAEG
Sbjct: 202 GPLGFDRSTGASKGFALIIFRTSEGARKALLDPFKTIDGHQVHCKLAAEG 251
>gi|297739851|emb|CBI30033.3| unnamed protein product [Vitis vinifera]
Length = 342
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 129/220 (58%), Gaps = 4/220 (1%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E + LL+P SK QL+DL++ ++ P + + I A D RK+FV GL W+TT E+L
Sbjct: 22 EELKLLLDPLSKSQLVDLLSKLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETL 81
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+AF GEIEE +++DK TGK++G+ FI +K ++ AL+ P + ++ RMA C LA
Sbjct: 82 CAAFRLHGEIEEGAVIVDKTTGKSRGYGFITYKHMESTQSALQAPSKLIDGRMAVCNLAC 141
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
G +G Q +RK+Y+ + DV E L FF R GEIE G + +D T +SR
Sbjct: 142 EGLSGASTTPD----QAQRKLYIGGLAPDVTSEVLLSFFGRHGEIEEGSVAYDKETNESR 197
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
GF YKTVE A+KA+++PQK G + + A K +
Sbjct: 198 GFGFVTYKTVEAAKKAIDDPQKFLGGRSIIVKLADSHKGK 237
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 191 VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
+K +A RK++V + + E L F GEIE G + D TTGKSRG+ Y
Sbjct: 54 IKSVASADPVHRKLFVRGLAWNTTSETLCAAFRLHGEIEEGAVIVDKTTGKSRGYGFITY 113
Query: 251 KTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQ 296
K +E + AL+ P K+ +G C A EG S +S++ +QAQ
Sbjct: 114 KHMESTQSALQAPSKLIDGRMAVCNLACEGL----SGASTTPDQAQ 155
>gi|302769522|ref|XP_002968180.1| hypothetical protein SELMODRAFT_169811 [Selaginella moellendorffii]
gi|300163824|gb|EFJ30434.1| hypothetical protein SELMODRAFT_169811 [Selaginella moellendorffii]
Length = 296
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 121/204 (59%), Gaps = 4/204 (1%)
Query: 78 LIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
L+ ++ + D I E A +D + RK+FV GL W+TT + L AF GEIEE
Sbjct: 4 LVGFCICRGSQYSAVADDIREVASKDPAHRKLFVRGLAWETTSQDLREAFEQFGEIEEGA 63
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAA 197
++IDK TGK++GF FI FK +A +ALK P + ++ R+ C LASVG +G G G
Sbjct: 64 VIIDKATGKSRGFGFITFKHMDSAQRALKEPSKTIDGRITVCNLASVGTSGSG----GTN 119
Query: 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGAR 257
Q +RK+Y+ + + E L F ++GEIE G + +D T KSRGFA YKTVE AR
Sbjct: 120 DQAQRKLYIGGLSYETSNETLLNIFSKYGEIEEGAVAYDKNTNKSRGFAFVTYKTVEAAR 179
Query: 258 KALEEPQKMFEGHQLQCQKAAEGK 281
A+++P K EG + + AAEG+
Sbjct: 180 NAIDDPNKTIEGRHVIVKLAAEGQ 203
>gi|326488012|dbj|BAJ89845.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 441
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 150/255 (58%), Gaps = 18/255 (7%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + LL+P S+DQL D+ AAAA + D + ADRD + RK+FV GLGW+T +SL
Sbjct: 32 DDVLRLLDPLSRDQLADIAAAAALASGVALDAVRAAADRDPALRKLFVRGLGWETNSDSL 91
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ F G++EE ++ DK TG++KG+ F+ F+ +A+ ALK P +K++ R+ QLA+
Sbjct: 92 RAIFSAYGDLEEAVVISDKTTGRSKGYGFVTFRHADSALLALKEPSKKIDARVTVTQLAA 151
Query: 184 VGP--------TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGF 235
G TG G +A RKI+V NVP D+ E+L F +GEIE GP+GF
Sbjct: 152 AGAAGGPSGGTTGAGGIP--SADVSLRKIFVGNVPADMPSERLLAHFASYGEIEEGPLGF 209
Query: 236 DITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQA 295
D TGK RGFA+FVYKT EGA+ +L + K+ +G QL C+ A EGK
Sbjct: 210 DKLTGKFRGFALFVYKTPEGAQASLVDSTKVIDGQQLLCKLAIEGKK-------GKQQPQ 262
Query: 296 QMMIQKQQQP-MLQG 309
Q QQQP MLQG
Sbjct: 263 QSGPAGQQQPQMLQG 277
>gi|115438550|ref|NP_001043567.1| Os01g0614500 [Oryza sativa Japonica Group]
gi|54290288|dbj|BAD61233.1| heterogeneous nuclear ribonucleoprotein A2/B1-like [Oryza sativa
Japonica Group]
gi|113533098|dbj|BAF05481.1| Os01g0614500 [Oryza sativa Japonica Group]
Length = 447
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 136/222 (61%), Gaps = 6/222 (2%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + L+EP S+DQL D+ A AA + D + ADRD + RK+FV GLGW+T +SL
Sbjct: 33 DDLLRLVEPLSRDQLADIAATAALASGVALDAVRAAADRDPALRKLFVRGLGWETNSDSL 92
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ F G++EE ++ DK TG++KG+ F+ F+ +AV ALK P +K++ RM QLA+
Sbjct: 93 RAIFSAFGDLEEAVVITDKSTGRSKGYGFVTFRHADSAVLALKEPSKKIDGRMTVTQLAA 152
Query: 184 VGPTGPGVKEQGAAAQGE------RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDI 237
G G A RKI+V NVP D+ E+L F +GEIE GP+GFD
Sbjct: 153 AGAAGGASGGAAGAGGAPAADVSLRKIFVGNVPADMPSERLLAHFAAYGEIEEGPLGFDK 212
Query: 238 TTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279
TGK RGFA+FVYKT EGA+ +L + K+ +GHQL C+ A E
Sbjct: 213 QTGKFRGFALFVYKTPEGAQASLVDSVKVIDGHQLVCKLAIE 254
>gi|449437591|ref|XP_004136575.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Cucumis sativus]
gi|449501907|ref|XP_004161491.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Cucumis sativus]
Length = 335
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 127/220 (57%), Gaps = 4/220 (1%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E + +LLEP K QL+DL+A ++ P + + I A D RK+FV GL W+TT E+L
Sbjct: 22 EHLRTLLEPLPKPQLVDLLARLGSQYPSIAEEIKSVASADPVNRKLFVRGLAWNTTSETL 81
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+AF GEIEE ++ DK TGK++G+ FI +K ++ ALK P + + RMA C LA
Sbjct: 82 CAAFSVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTKAALKAPSKIIEGRMAVCNLAC 141
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
G +G A +RK+Y+ + D+ E L FF R+G+IE G + +D T +SR
Sbjct: 142 EGLSGSSTTPDLA----QRKLYIGGLSPDITSEVLLNFFGRYGDIEEGSVAYDKDTNESR 197
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
GF Y T E A+KA+++P K F G + + A +N+
Sbjct: 198 GFGFVTYTTAEAAKKAIDDPDKTFGGRNIIVKLADSHRNK 237
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 181 LASVGPTGPGVKEQ----GAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFD 236
LA +G P + E+ +A RK++V + + E L F GEIE G + +D
Sbjct: 40 LARLGSQYPSIAEEIKSVASADPVNRKLFVRGLAWNTTSETLCAAFSVHGEIEEGAVIYD 99
Query: 237 ITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQ 296
TGKSRG+ YK +E + AL+ P K+ EG C A EG S SS++ + AQ
Sbjct: 100 KATGKSRGYGFITYKHMESTKAALKAPSKIIEGRMAVCNLACEGL----SGSSTTPDLAQ 155
>gi|356572088|ref|XP_003554202.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Glycine max]
Length = 336
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 130/221 (58%), Gaps = 4/221 (1%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E + L+EP +K QL+DL+A ++ P + + I A D + RK+FV GL W+TT E+L
Sbjct: 23 EELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETL 82
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+AF GEIEE ++ DKVTGK++G+ FI FK ++ +AL+ P + ++ R+A C LA
Sbjct: 83 RAAFQEHGEIEEGAVIFDKVTGKSRGYGFITFKNMESTQQALRAPSKLIDGRLAVCNLAC 142
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
+G A RK+Y+ ++ +V E L +F R GEIE G + +D T +SR
Sbjct: 143 ESLSG----TSSAPDLSLRKLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESR 198
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284
GF YKT E A+KA+++ +KM G + + A K +T
Sbjct: 199 GFGFVTYKTAEAAKKAIDDVEKMLGGRNIVVKYADSHKGKT 239
>gi|168045478|ref|XP_001775204.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673417|gb|EDQ59940.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 167
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 112/171 (65%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RKIFV GLGWD+T E+L + F GE+EE +V+DK TGK++GF F+ F A ++LK
Sbjct: 1 RKIFVRGLGWDSTTETLKTVFSQFGEVEEGAVVMDKGTGKSRGFGFVTFIHMDGAQRSLK 60
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
P ++++ RM CQLAS G ++ + RKIYV N+ D+ ++L FF +G
Sbjct: 61 EPSKRIDGRMTDCQLASTGALQINPNQEVST----RKIYVGNISLDLSADRLLAFFAGYG 116
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
EI GP+GFD TG+SRGFA+F+YKTVE ++AL EP K +G Q+ C+ A
Sbjct: 117 EIGEGPLGFDKFTGRSRGFALFIYKTVEATKRALLEPIKTLDGIQMYCKLA 167
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%)
Query: 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RKI+V + D E L+ F +FGE+E G + D TGKSRGF + ++GA+++L+
Sbjct: 1 RKIFVRGLGWDSTTETLKTVFSQFGEVEEGAVVMDKGTGKSRGFGFVTFIHMDGAQRSLK 60
Query: 262 EPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQ 294
EP K +G CQ A+ G + + N S +
Sbjct: 61 EPSKRIDGRMTDCQLASTGALQINPNQEVSTRK 93
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA 160
+++VS RKI+V + D + + LL+ F G GEI E L DK TG+++GFA ++KT +A
Sbjct: 86 NQEVSTRKIYVGNISLDLSADRLLAFFAGYGEIGEGPLGFDKFTGRSRGFALFIYKTVEA 145
Query: 161 AVKALKNPQRKVNNRMASCQLA 182
+AL P + ++ C+LA
Sbjct: 146 TKRALLEPIKTLDGIQMYCKLA 167
>gi|359806849|ref|NP_001241058.1| uncharacterized protein LOC100776344 [Glycine max]
gi|255634852|gb|ACU17785.1| unknown [Glycine max]
Length = 340
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/339 (31%), Positives = 165/339 (48%), Gaps = 26/339 (7%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E + L+EP +K QL+DL+A ++ P + + I A D + RK+FV GL W+TT E+L
Sbjct: 24 EELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETL 83
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+AF GEIEE ++ DKVTGK++G+ FI FK ++ +AL+ P + ++ R+A C LA
Sbjct: 84 RAAFQEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQALRAPSKLIDGRLAVCNLAC 143
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
+G A RK+Y+ ++ +V E L +F R GEIE G + +D T +SR
Sbjct: 144 ESLSG----TSSAPDLSLRKLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESR 199
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQ 303
GF YKT E A+KA+++ +K G + + A K +T + ++
Sbjct: 200 GFGFVTYKTAEAAKKAIDDLEKTLGGRNIVVKYADSQKGKTGQPPFPAG-----VVPMAA 254
Query: 304 QPMLQG--QQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGGFLVNPGLINPMVAGA 361
PM G QQ G+ N + + Q +A + P +P P +P
Sbjct: 255 LPMNPGYMQQPGKANVSSRPPINYSYPQTVAPYSALPYPNP--------PTAPSPYPT-- 304
Query: 362 LHQGAIPASNVGAMAGSSVLGSFGPGAAQGLQQQQHVYP 400
QG IP V A F P G+ + YP
Sbjct: 305 --QGQIPYPQVSAKKDRH---GFLPTQPVGMNNYPYYYP 338
>gi|297825067|ref|XP_002880416.1| hypothetical protein ARALYDRAFT_481072 [Arabidopsis lyrata subsp.
lyrata]
gi|297326255|gb|EFH56675.1| hypothetical protein ARALYDRAFT_481072 [Arabidopsis lyrata subsp.
lyrata]
Length = 334
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 98/129 (75%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
+ E + LL PYSKDQL+DL+ +AA ++ ++E ADRDV+ RKIFV+GL W+TT+E
Sbjct: 53 DPEELRELLRPYSKDQLVDLVCSAAQIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRE 112
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
+L+ F G GEIEEC +VIDK TGKAKGF F++FKTRK A +ALK P++++ NR A+CQL
Sbjct: 113 TLVDVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQL 172
Query: 182 ASVGPTGPG 190
AS+GP G
Sbjct: 173 ASMGPAASG 181
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 119/248 (47%), Gaps = 38/248 (15%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
RKI+V +P + +E L FE +GEIE + D TGK++GF ++KT +GA++AL
Sbjct: 97 HRKIFVYGLPWETTRETLVDVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 156
Query: 261 EEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQEQ 320
+EP+K CQ A+ G + S ++QA + + QGQ Q Q + +
Sbjct: 157 KEPKKRILNRTATCQLASMGP----AASGKGHDQAGPVKISMGTMVNQGQSQQQQAQGQH 212
Query: 321 VLAAMAAAQNLALFGQHPGMHPLYG-GFLVNP--------GLINPMVAGALHQGA----- 366
+ A + + G HP+YG G L NP G + PM+AGAL G
Sbjct: 213 MFNGGGMAASPFMLGNQ--YHPVYGAGMLANPALAAAAGGGYMYPMLAGALAHGGMGSDL 270
Query: 367 IPASNVGAM-------AGSSVLGSFGPGAAQGLQQQQHVYPNAPQSKSQGT------GGG 413
+ +S +G + AG SVLGS+ G Q YP++ +GT GG
Sbjct: 271 VQSSQMGGIGDPSVGAAGLSVLGSYFRG-----QGMSTAYPDSDAGGKRGTGKDSDAGGS 325
Query: 414 SFPGYTSY 421
SF GY++Y
Sbjct: 326 SFHGYSNY 333
>gi|21595502|gb|AAM66107.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 343
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 101/132 (76%)
Query: 59 SEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDT 118
+E + E + LL+PYSKDQL+DL+ +A+ ++ ++E ADRDV+ RKIFV+GL W+T
Sbjct: 56 NEFDPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWET 115
Query: 119 TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMAS 178
T+E+L+ F G GEIEEC +VIDK TGKAKGF F++FKTRK A +ALK P++++ NR A+
Sbjct: 116 TRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTAT 175
Query: 179 CQLASVGPTGPG 190
CQLAS+GP G
Sbjct: 176 CQLASMGPAASG 187
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 114/252 (45%), Gaps = 43/252 (17%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
RKI+V +P + +E L G FE +GEIE + D TGK++GF ++KT +GA++AL
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 261 EEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQEQ 320
+EP+K CQ A+ G +++ + + I QQ Q Q
Sbjct: 163 KEPKKRILNRTATCQLASMG---PAASGKGHDQPGPVKISMGSMANHGQSQQQQVQGQHV 219
Query: 321 VLAAMAAAQNLALFGQHPGMHPLYG-GFLVNP----------GLINPMVAGALHQGAIPA 369
AA L Q+ HPLYG G L NP G + PM+AGAL G + +
Sbjct: 220 FNGGGMAASPFMLGNQY---HPLYGAGMLGNPALAAAAAAGGGYMYPMLAGALAHGGLGS 276
Query: 370 S--------------NVGAMAGSSVLGSFGPGAAQGLQQQQHVYPNAPQSKSQGT----- 410
+VGA AG S LGS+ G Q YP++ +GT
Sbjct: 277 DMVQSSQMGGIGVDPSVGA-AGLSALGSYFRG-----QSLPSTYPDSDAGGKRGTGKDSD 330
Query: 411 -GGGSFPGYTSY 421
GG SF GY++Y
Sbjct: 331 AGGSSFHGYSNY 342
>gi|18399877|ref|NP_565525.1| UBP1 interacting protein 1a [Arabidopsis thaliana]
gi|17380804|gb|AAL36089.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20198218|gb|AAD25815.2| putative RNA-binding protein [Arabidopsis thaliana]
gi|21436357|gb|AAM51348.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51970870|dbj|BAD44127.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330252168|gb|AEC07262.1| UBP1 interacting protein 1a [Arabidopsis thaliana]
Length = 343
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 101/132 (76%)
Query: 59 SEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDT 118
+E + E + LL+PYSKDQL+DL+ +A+ ++ ++E ADRDV+ RKIFV+GL W+T
Sbjct: 56 NEFDPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWET 115
Query: 119 TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMAS 178
T+E+L+ F G GEIEEC +VIDK TGKAKGF F++FKTRK A +ALK P++++ NR A+
Sbjct: 116 TRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTAT 175
Query: 179 CQLASVGPTGPG 190
CQLAS+GP G
Sbjct: 176 CQLASMGPAASG 187
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 114/252 (45%), Gaps = 43/252 (17%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
RKI+V +P + +E L G FE +GEIE + D TGK++GF ++KT +GA++AL
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 261 EEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQEQ 320
+EP+K CQ A+ G +++ + + I QQ Q Q
Sbjct: 163 KEPKKRILNRTATCQLASMG---PAASGKGHDQPGPVKISMGSMANHGQPQQQQVQGQHV 219
Query: 321 VLAAMAAAQNLALFGQHPGMHPLYG-GFLVNP----------GLINPMVAGALHQGAIPA 369
AA L Q+ HPLYG G L NP G + PM+AGAL G + +
Sbjct: 220 FNGGGMAASPFMLGNQY---HPLYGAGMLGNPALAAAAAAGGGYMYPMLAGALAHGGLGS 276
Query: 370 S--------------NVGAMAGSSVLGSFGPGAAQGLQQQQHVYPNAPQSKSQGT----- 410
+VGA AG S LGS+ G Q YP++ +GT
Sbjct: 277 DMVQSSQMGGIGVDPSVGA-AGLSALGSYFRG-----QSLPSTYPDSDAGGKRGTGKDSD 330
Query: 411 -GGGSFPGYTSY 421
GG SF GY++Y
Sbjct: 331 AGGSSFHGYSNY 342
>gi|30681615|ref|NP_850021.1| UBP1 interacting protein 1a [Arabidopsis thaliana]
gi|330252167|gb|AEC07261.1| UBP1 interacting protein 1a [Arabidopsis thaliana]
Length = 347
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 101/132 (76%)
Query: 59 SEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDT 118
+E + E + LL+PYSKDQL+DL+ +A+ ++ ++E ADRDV+ RKIFV+GL W+T
Sbjct: 56 NEFDPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWET 115
Query: 119 TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMAS 178
T+E+L+ F G GEIEEC +VIDK TGKAKGF F++FKTRK A +ALK P++++ NR A+
Sbjct: 116 TRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTAT 175
Query: 179 CQLASVGPTGPG 190
CQLAS+GP G
Sbjct: 176 CQLASMGPAASG 187
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 116/255 (45%), Gaps = 43/255 (16%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
RKI+V +P + +E L G FE +GEIE + D TGK++GF ++KT +GA++AL
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 261 EEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQEQ 320
+EP+K CQ A+ G +++ + + I QQ Q Q
Sbjct: 163 KEPKKRILNRTATCQLASMG---PAASGKGHDQPGPVKISMGSMANHGQPQQQQVQGQHV 219
Query: 321 VLAAMAAAQNLALFGQHPGMHPLYG-GFLVNP----------GLINPMVAGALHQGAIPA 369
AA L Q+ HPLYG G L NP G + PM+AGAL G + +
Sbjct: 220 FNGGGMAASPFMLGNQY---HPLYGAGMLGNPALAAAAAAGGGYMYPMLAGALAHGGLGS 276
Query: 370 S--------------NVGAMAGSSVLGSFGPGAAQGLQQQQHVYPNAPQSKSQGT----- 410
+VGA AG S LGS+ G Q YP++ +GT
Sbjct: 277 DMVQSSQMGGIGVDPSVGA-AGLSALGSYFRG-----QSLPSTYPDSDAGGKRGTGKDSD 330
Query: 411 -GGGSFPGYTSYMWY 424
GG SF GY++Y WY
Sbjct: 331 AGGSSFHGYSNYSWY 345
>gi|357142788|ref|XP_003572694.1| PREDICTED: uncharacterized protein LOC100829612 [Brachypodium
distachyon]
Length = 356
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 130/214 (60%), Gaps = 8/214 (3%)
Query: 72 PYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSG 131
P+S+ +L+DL+ A + L + +A D + R++FVHGLG + +L +AF G
Sbjct: 66 PFSRGELLDLLVEACLRDSALLSRLAASAASDATHRRLFVHGLGPGSNSAALAAAFAPFG 125
Query: 132 EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGV 191
+EE V D+ TG+ +G+ F+ F+ +A +AL + ++V +R +CQLAS+G GP
Sbjct: 126 VLEESHAVADRATGRCRGYGFVTFRRSSSARRALADASKRVGDRPVACQLASLGSAGPCP 185
Query: 192 KEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYK 251
+ RK++V VP +++LR FF +FGEIE GP+G D TG+ +AIF+YK
Sbjct: 186 E--------MRKLFVDKVPAGASRDELRKFFCQFGEIEAGPLGADHATGRFHRYAIFLYK 237
Query: 252 TVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTS 285
+ G RKALEEP+K+F+G +L C+ A K T+
Sbjct: 238 SPGGLRKALEEPRKVFDGCELHCRPAHSKKRATA 271
>gi|19574236|emb|CAD28134.1| UBP1 interacting protein 1a [Arabidopsis thaliana]
Length = 344
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/132 (54%), Positives = 101/132 (76%)
Query: 59 SEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDT 118
+E + E + LL+PYSKDQL+DL+ +A+ ++ ++E ADRDV+ RKIFV+GL W+T
Sbjct: 57 NEFDPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWET 116
Query: 119 TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMAS 178
T+E+L+ F G GEIEEC ++IDK TGKAKGF F++FKTRK A +ALK P++++ NR A+
Sbjct: 117 TRETLVGVFEGYGEIEECTVLIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTAT 176
Query: 179 CQLASVGPTGPG 190
CQLAS+GP G
Sbjct: 177 CQLASMGPAASG 188
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 114/252 (45%), Gaps = 43/252 (17%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
RKI+V +P + +E L G FE +GEIE + D TGK++GF ++KT +GA++AL
Sbjct: 104 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVLIDKATGKAKGFGFVMFKTRKGAKEAL 163
Query: 261 EEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQEQ 320
+EP+K CQ A+ G +++ + + I QQ Q Q
Sbjct: 164 KEPKKRILNRTATCQLASMG---PAASGKGHDQPGPVKISMGSMANHGQPQQQQVQGQHV 220
Query: 321 VLAAMAAAQNLALFGQHPGMHPLYG-GFLVNP----------GLINPMVAGALHQGAIPA 369
AA L Q+ HPLYG G L NP G + PM+AGAL G + +
Sbjct: 221 FNGGGMAASPFMLGNQY---HPLYGAGMLGNPALAAAAAAGGGYMYPMLAGALAHGGLGS 277
Query: 370 S--------------NVGAMAGSSVLGSFGPGAAQGLQQQQHVYPNAPQSKSQGT----- 410
+VGA AG S LGS+ G Q YP++ +GT
Sbjct: 278 DMVQSSQMGGIGVDPSVGA-AGLSALGSYFRG-----QSLPSTYPDSDAGGKRGTGKDSD 331
Query: 411 -GGGSFPGYTSY 421
GG SF GY++Y
Sbjct: 332 AGGSSFHGYSNY 343
>gi|168021263|ref|XP_001763161.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685644|gb|EDQ72038.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 122/205 (59%), Gaps = 4/205 (1%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
+ + SLLEP +KDQLI L+ A + P + D I + A +D RK+FV GL W+T+ +L
Sbjct: 10 DELKSLLEPLNKDQLIALLIEAGSLFPAVADDIRDIASKDPVHRKLFVRGLAWETSSMAL 69
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
AF GE+EE ++ DK TGK++GF FI FK +A +ALK P + ++ R+ C LAS
Sbjct: 70 REAFEQYGEVEEACVITDKGTGKSRGFGFITFKHMDSAHRALKEPSKNIDGRITVCNLAS 129
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
G T Q +RK+Y+ + D + L F ++GEIE G I +D T KSR
Sbjct: 130 AGSTSGTSSTD----QAQRKLYIGGLSYDTTSDTLLNIFSQYGEIEEGAIAYDKNTNKSR 185
Query: 244 GFAIFVYKTVEGARKALEEPQKMFE 268
GFA +K++EGA++A+E+ K E
Sbjct: 186 GFAFVTFKSIEGAKRAIEDSNKSIE 210
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RK++V + + LR FE++GE+E + D TGKSRGF +K ++ A +AL+
Sbjct: 53 RKLFVRGLAWETSSMALREAFEQYGEVEEACVITDKGTGKSRGFGFITFKHMDSAHRALK 112
Query: 262 EPQKMFEGHQLQCQ 275
EP K +G C
Sbjct: 113 EPSKNIDGRITVCN 126
>gi|297599561|ref|NP_001047359.2| Os02g0602600 [Oryza sativa Japonica Group]
gi|255671069|dbj|BAF09273.2| Os02g0602600 [Oryza sativa Japonica Group]
Length = 415
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 125/209 (59%), Gaps = 14/209 (6%)
Query: 72 PYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSG 131
P+++++L+DL+ A + P L + TA+ D + R++FVHGL T ++ +AF G
Sbjct: 69 PFTRNELLDLLVEACLRNPALRSRLAATAESDAAHRRLFVHGLSPGVTAAAMAAAFAPFG 128
Query: 132 EIEECKLVIDKVTGKAKGFAFIVF---KTRKAAVKALKNPQRKVNNRMASCQLASVGPTG 188
++EC V D+ TG+ +G+ F+ F + A+ A + + V R +CQLAS+GPT
Sbjct: 129 ALDECHAVADRATGRCRGYGFVTFRRRSAARRALAADASSRLAVGGRPVACQLASLGPTS 188
Query: 189 PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIF 248
P +RK++V NVP ++LR F RFGEIE GP+G D TG+ RG+AIF
Sbjct: 189 P-----------DRKLFVDNVPARAAHDELRRLFSRFGEIEAGPLGADRATGQFRGYAIF 237
Query: 249 VYKTVEGARKALEEPQKMFEGHQLQCQKA 277
YK EG KALEE + +F+G +L C++A
Sbjct: 238 FYKYPEGLTKALEERKVVFDGCELHCRRA 266
>gi|18399023|ref|NP_565450.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|20197017|gb|AAC16468.2| putative RNA-binding protein [Arabidopsis thaliana]
gi|330251780|gb|AEC06874.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 613
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 99/143 (69%), Gaps = 1/143 (0%)
Query: 55 SESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGL 114
S+S+ E + E I LL YSK++L++LI A K L ILE+ADRD++QR IFV G
Sbjct: 356 SDSDFEHDKEDIKQLLVAYSKEELVNLIYKTAEKGSRLISAILESADRDIAQRNIFVRGF 415
Query: 115 GWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNN 174
GWDTTQE+L +AF GEIEEC +V+DK TG+ KG+ F++FKTRK A +ALK P++++ N
Sbjct: 416 GWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYN 475
Query: 175 RMASCQLASVGPTGPGVKEQGAA 197
R+ C LAS P G KEQ A
Sbjct: 476 RIVVCNLASEKP-GKAGKEQDMA 497
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 25/206 (12%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+R I+V D +E L+ FE +GEIE + D TG+ +G+ ++KT +GAR+AL
Sbjct: 407 QRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREAL 466
Query: 261 EEPQKMFEGHQLQCQKAAE--GKNRTSSNSSSSNNQAQMMIQKQQQPMLQGQQQGQG--- 315
+ P+K + C A+E GK + + N + Q + +L G + G+G
Sbjct: 467 KRPEKRMYNRIVVCNLASEKPGKAGKEQDMAEPVNIDLTKMANQSEAVLPGIELGRGHVL 526
Query: 316 ----NEQEQVLAAMAAAQNLALFG---QHPGMHPLYGGFLVN---PGLINPMVAGA---L 362
++Q+Q + QN+ +G Q PG P+YG N GL N + G+
Sbjct: 527 EKMHHQQQQTMDMF--GQNMPFYGYSHQFPGFDPMYGALSGNQMLAGLPNYGMFGSGMMT 584
Query: 363 HQGA-IPASNVGAMAGSSVLGSFGPG 387
+QG+ +P N MAG FG G
Sbjct: 585 NQGSMLPPPNHLGMAGQ----YFGDG 606
>gi|297836326|ref|XP_002886045.1| hypothetical protein ARALYDRAFT_480534 [Arabidopsis lyrata subsp.
lyrata]
gi|297331885|gb|EFH62304.1| hypothetical protein ARALYDRAFT_480534 [Arabidopsis lyrata subsp.
lyrata]
Length = 597
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 99/143 (69%), Gaps = 1/143 (0%)
Query: 55 SESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGL 114
S+S+ E + E I LL YSK++L++LI A K L ILE+ADRD++QR IFV G
Sbjct: 346 SDSDFEYDKEDIKQLLVSYSKEELVNLIYKTAEKGSRLISAILESADRDIAQRNIFVRGF 405
Query: 115 GWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNN 174
GWDTT E+L +AF GEIE+C +V+DK TG+ KG+ F+ FKTRK A +ALK P++++ N
Sbjct: 406 GWDTTHENLKAAFETYGEIEDCSVVMDKDTGRGKGYGFVQFKTRKGAREALKRPEKRMYN 465
Query: 175 RMASCQLASVGPTGPGVKEQGAA 197
R+ C LAS P+G G KEQ A
Sbjct: 466 RIVVCNLASKKPSGAG-KEQDMA 487
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 33/207 (15%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+R I+V D E L+ FE +GEIE + D TG+ +G+ +KT +GAR+AL
Sbjct: 397 QRNIFVRGFGWDTTHENLKAAFETYGEIEDCSVVMDKDTGRGKGYGFVQFKTRKGAREAL 456
Query: 261 EEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQ------MMIQKQQQPMLQGQQQGQ 314
+ P+K + C A+ + S + + A+ + Q + +L G + G
Sbjct: 457 KRPEKRMYNRIVVCNLAS----KKPSGAGKEQDMAEPVKIDLTQMANQSEAVLPGPELGH 512
Query: 315 G------NEQEQVLAAMAAAQNLALFG---QHPGMHPLYGGFLVNPGLINPMVAGA---L 362
G + Q+Q + QN+ +G Q PG P+YG GL N + G+ +
Sbjct: 513 GHVLKKMHHQQQTIDMF--GQNIPFYGHSHQFPGFDPMYGAL---SGLANYGMFGSGMMM 567
Query: 363 HQGAI--PASNVGAMAGSSVLGSFGPG 387
+QG++ P N MAG FG G
Sbjct: 568 NQGSMLQPPPNHLGMAGQ----YFGDG 590
>gi|242071607|ref|XP_002451080.1| hypothetical protein SORBIDRAFT_05g023870 [Sorghum bicolor]
gi|241936923|gb|EES10068.1| hypothetical protein SORBIDRAFT_05g023870 [Sorghum bicolor]
Length = 431
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 146/288 (50%), Gaps = 15/288 (5%)
Query: 63 SESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQES 122
S+++ L++PYSK +LI ++A AAT P L + A S R++FVHGL +
Sbjct: 60 SDAVRRLIDPYSKPRLIAILAEAATANPALRARLGAAAAASPSHRQLFVHGLPPHADSAA 119
Query: 123 LLSAFGGSGEIEECKLVID-KVTGK-AKGFAFIVFKTRKAAVKALKN-PQRKVNNRMASC 179
L AF G + +C + D + +G+ KG+ F+ F +R AA A++ P+ V R S
Sbjct: 120 LAEAFSRFGPLADCHAIADHRASGRCCKGYGFVSFASRAAARHAVREAPRVTVAGRPVSV 179
Query: 180 QLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239
Q AS GP G A R++YV+NV D E+LR FF RFGE+E GP GFD T
Sbjct: 180 QFASAGPD---PSGGGGAGAAGRRVYVTNVAPDASAERLRAFFARFGELEGGPFGFDGDT 236
Query: 240 GKSR------GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE-GKNRTSSNSSSSN 292
G +R G+A+FVY+ GA KA++EP ++FEG L CQ A E R + +
Sbjct: 237 GYARFGELEGGYALFVYQAAAGAAKAVQEPYRVFEGRTLHCQLANEPAAARKTKAPVAPP 296
Query: 293 NQAQMMIQKQQQPMLQGQQQGQGNEQEQVLAAMA--AAQNLALFGQHP 338
P LQ LA+ A AQ AL GQ+P
Sbjct: 297 PAVVAASAAGTPPRLQSVLDAAAAAGVVDLASYARDPAQAAALLGQNP 344
>gi|21593807|gb|AAM65774.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 382
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/125 (56%), Positives = 90/125 (72%)
Query: 55 SESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGL 114
S+S+ E + E I +LLE YSK++LI+LI A K L + E+ADRD SQR IFV GL
Sbjct: 111 SDSDFEFDKEDIKNLLESYSKEELINLIYKTAEKGSKLISAVFESADRDSSQRNIFVRGL 170
Query: 115 GWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNN 174
GWDTT E+L +AF GEI EC +V+DK TG+AKGF F++FKTRK A ALKNP++++ N
Sbjct: 171 GWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYN 230
Query: 175 RMASC 179
R SC
Sbjct: 231 RTVSC 235
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 26/210 (12%)
Query: 191 VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
V E +R I+V + D E L+ FE +GEI + D TG+++GF ++
Sbjct: 152 VFESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
Query: 251 KTVEGARKALEEPQKMFEGHQLQCQKAA---EGKNR--------TSSNSSSSNNQAQMMI 299
KT +GAR AL+ P+K + C A GK R + S + NQ++M +
Sbjct: 212 KTRKGARAALKNPEKRMYNRTVSCLPARPFNSGKTREQQQPVESVKIDLSHTGNQSEMAL 271
Query: 300 QKQQQPMLQ-GQQQGQGNEQEQVLAAMAAAQNLALFGQH---PGMHPLYGGFLVNP---G 352
P + G +G++Q+Q + +M A QN+ +G PG +P+YG + NP G
Sbjct: 272 -----PGIDLGHGLDKGHQQQQNM-SMYAGQNMPFYGHSQPPPGFNPMYGAMMGNPMVAG 325
Query: 353 LINPMV--AGALHQGAIPASNVGAMAGSSV 380
L N + +G ++QG + N M G V
Sbjct: 326 LQNYRMFGSGMMNQGPMMPPNHMGMVGQYV 355
>gi|18399879|ref|NP_565526.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|20198217|gb|AAD25814.2| putative RNA-binding protein [Arabidopsis thaliana]
gi|330252170|gb|AEC07264.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 382
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/125 (56%), Positives = 90/125 (72%)
Query: 55 SESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGL 114
S+S+ E + E I +LLE YSK++LI+LI A K L + E+ADRD SQR IFV GL
Sbjct: 111 SDSDFEFDKEDIKNLLESYSKEELINLIYKTAEKGSKLISAVFESADRDSSQRNIFVRGL 170
Query: 115 GWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNN 174
GWDTT E+L +AF GEI EC +V+DK TG+AKGF F++FKTRK A ALKNP++++ N
Sbjct: 171 GWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYN 230
Query: 175 RMASC 179
R SC
Sbjct: 231 RTVSC 235
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 26/210 (12%)
Query: 191 VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
V E +R I+V + D E L+ FE +GEI + D TG+++GF ++
Sbjct: 152 VFESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
Query: 251 KTVEGARKALEEPQKMFEGHQLQCQKAA---EGKNR--------TSSNSSSSNNQAQMMI 299
KT +GAR AL+ P+K + C A GK R + S + NQ++M +
Sbjct: 212 KTRKGARAALKNPEKRMYNRTVSCLPARPFNSGKPREQQQPVESVKIDLSHTGNQSEMAL 271
Query: 300 QKQQQPMLQ-GQQQGQGNEQEQVLAAMAAAQNLALFGQH---PGMHPLYGGFLVNP---G 352
P + G +G++Q+Q + +M A QN+ +G PG +P+YG + NP G
Sbjct: 272 -----PGIDLGHGLDKGHQQQQNM-SMYAGQNMPFYGHSQPPPGFNPMYGAMMGNPMVAG 325
Query: 353 LINPMV--AGALHQGAIPASNVGAMAGSSV 380
L N + +G ++QG + N M G V
Sbjct: 326 LQNYRMFGSGMMNQGPMMPPNHMGMVGQYV 355
>gi|297825069|ref|XP_002880417.1| hypothetical protein ARALYDRAFT_481073 [Arabidopsis lyrata subsp.
lyrata]
gi|297326256|gb|EFH56676.1| hypothetical protein ARALYDRAFT_481073 [Arabidopsis lyrata subsp.
lyrata]
Length = 374
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 93/133 (69%)
Query: 50 SCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKI 109
+ ++ S+S+ E + E + LLE YSK++LI+LI A K L + E+ADRD SQR I
Sbjct: 104 TTNNESDSDFEFDKEDVKHLLESYSKEELINLIYKTAEKGSKLISAVFESADRDSSQRNI 163
Query: 110 FVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ 169
FV GLGWDTT E+L +AF GEIEEC +V+DK TG+AKGF F++FKT K A AL+NP+
Sbjct: 164 FVRGLGWDTTHENLKAAFEVFGEIEECSVVMDKDTGRAKGFGFVLFKTCKGARAALRNPE 223
Query: 170 RKVNNRMASCQLA 182
+++ NR C LA
Sbjct: 224 KRMYNRTVICSLA 236
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 25/229 (10%)
Query: 191 VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
V E +R I+V + D E L+ FE FGEIE + D TG+++GF ++
Sbjct: 150 VFESADRDSSQRNIFVRGLGWDTTHENLKAAFEVFGEIEECSVVMDKDTGRAKGFGFVLF 209
Query: 251 KTVEGARKALEEPQKMFEGHQLQCQKA---AEGKNR------TSSNSSSSNNQAQMMIQK 301
KT +GAR AL P+K + C A GK R + S + N ++M++
Sbjct: 210 KTCKGARAALRNPEKRMYNRTVICSLAKPSTAGKPREQPVESVKIDLSRTANHSEMVLPG 269
Query: 302 QQQPMLQGQQQGQGNEQEQVLAAMAAAQNLALFG--QHPGMHPLYGGFLVNP---GLINP 356
+ G +G Q+Q M QN+ +G Q PG +P+YG + NP GL N
Sbjct: 270 ID--LAYGLDKGH---QQQQNMPMYVGQNMPFYGHSQPPGFNPMYGAMMGNPMVAGLPNY 324
Query: 357 MV--AGALHQGAIPASNVGAMAGSSV----LGSFGPGAAQGLQQQQHVY 399
+ +G ++QG + N MAG + + G A G ++ Y
Sbjct: 325 RMFGSGMMNQGPMVPPNHMGMAGQYIGDGNVNGVGASAGTGFDGERAWY 373
>gi|77551814|gb|ABA94611.1| RNA recognition motif family protein [Oryza sativa Japonica Group]
Length = 415
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 143/273 (52%), Gaps = 32/273 (11%)
Query: 17 QKPNKKILKKEPKSLKKPEPPPVAAAAAAATSSSCSSSSESESEPESESISSLLEPYSKD 76
+KPN+K +++P+ P+ P S CS S S + LL+PYSK
Sbjct: 6 EKPNRK--RRKPRQDPSPDSGP-------GPDSDCSPPSSPTS------LRRLLDPYSKP 50
Query: 77 QLIDLIAAAATKI-------PLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGG 129
+L+ L++ AA P L I AD S R++FVHGL +L +AF
Sbjct: 51 RLLALLSDAAATAGAGADDDPTLLARIRAAADASPSHRRLFVHGLPPHADAPALAAAFSR 110
Query: 130 SGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR---KVNNRMASCQLASVGP 186
G + EC +V + TG KGF F+ F++R AA +AL+ R V R S Q A+
Sbjct: 111 FGPLAECDVVARRATGACKGFGFVTFQSRAAARRALREVGRGGVAVAGRAVSAQYATA-- 168
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
AA+ R++YV+NV E+LR FF FGE+E GP GFD TG SRG A
Sbjct: 169 -----GAAAAASAAGRRVYVTNVAPGASAERLRAFFAGFGELEGGPFGFDADTGSSRGCA 223
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279
+FVY+ E AR+ALEEP ++FEG L CQ AA+
Sbjct: 224 LFVYRAAEDARRALEEPYRVFEGRTLHCQLAAD 256
>gi|357151715|ref|XP_003575880.1| PREDICTED: uncharacterized protein LOC100834641 [Brachypodium
distachyon]
Length = 419
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 146/280 (52%), Gaps = 31/280 (11%)
Query: 69 LLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFG 128
LL+PY K +L L+A+AA+ P L I AD +S R++FVHGL +L +AF
Sbjct: 60 LLDPYPKPRLAALLASAASADPALLARIRAAADASLSHRRVFVHGLPPRADGPALEAAFS 119
Query: 129 GSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTG 188
G + +C +V G+ KG+ F+ FK+ AA +A+ P A GP
Sbjct: 120 AFGPLADCHVV---AAGRCKGYGFLTFKSHAAARRAVCAP-----------WFACAGP-- 163
Query: 189 PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDIT----TGKSRG 244
GA+A G R++YV+NV D E+LR FF FGE+E GP G D+ TG+ R
Sbjct: 164 ---DRSGASAVG-RRVYVANVGPDASVERLRTFFAGFGELEGGPFGLDVDGEAETGRPRS 219
Query: 245 --FAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE-GKNRTSSNSSSSNNQAQMMIQK 301
+++FVY+ EGARKA+E+P ++FEG L+CQ AA+ G + +NN+ +
Sbjct: 220 QRYSLFVYREAEGARKAVEQPYRVFEGRTLRCQLAADVGLTAWKKKNEDTNNEPPVPAPP 279
Query: 302 QQ---QPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHP 338
+P+L G + + A AQ AL GQ+P
Sbjct: 280 SYAALRPVLDAVVAATG-AGDLAMCARNPAQAAALLGQNP 318
>gi|125534915|gb|EAY81463.1| hypothetical protein OsI_36635 [Oryza sativa Indica Group]
Length = 269
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 142/273 (52%), Gaps = 32/273 (11%)
Query: 17 QKPNKKILKKEPKSLKKPEPPPVAAAAAAATSSSCSSSSESESEPESESISSLLEPYSKD 76
KPN+K +++P+ P+ P S CS S S + LL+PYSK
Sbjct: 6 DKPNRK--RRKPRQDPSPDSGP-------GPDSDCSPPSSPTS------LRRLLDPYSKP 50
Query: 77 QLIDLIAAAATKI-------PLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGG 129
+L+ L++ AA P L I AD S R++FVHGL +L +AF
Sbjct: 51 RLLALLSDAAATAGAGADDDPTLLARIRAAADASPSHRRLFVHGLPPHADAPALAAAFSR 110
Query: 130 SGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR---KVNNRMASCQLASVGP 186
G + EC +V + TG KGF F+ F++R AA +AL+ R V R S Q A+
Sbjct: 111 FGPLAECDVVARRATGACKGFGFVTFQSRAAARRALREVGRGGVAVAGRAVSAQYATA-- 168
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
AA+ R++YV+NV E+LR FF FGE+E GP GFD TG SRG A
Sbjct: 169 -----GAAAAASAAGRRVYVTNVAPGASAERLRAFFAGFGELEGGPFGFDADTGSSRGCA 223
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279
+FVY+ E AR+ALEEP ++FEG L CQ AA+
Sbjct: 224 LFVYRAAEDARRALEEPYRVFEGRTLHCQLAAD 256
>gi|298707500|emb|CBJ30102.1| Uncharacterized protein [Ectocarpus siliculosus]
Length = 470
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 24/260 (9%)
Query: 52 SSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFV 111
S+ +E+ +E E + + L+P +QL+ L+ + P D I D +KIFV
Sbjct: 108 SAFAENTAESRKEKLETWLKPLDNEQLVKLLLDIGSVNPGAFDEIHRACDDIPVNKKIFV 167
Query: 112 HGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK 171
GL W+T +SL + F GEI E +V+DK+T K+KG+ F+ FK+ A AL+NP++
Sbjct: 168 RGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKM 227
Query: 172 VNNRMASCQLASVGPTGP-----------------------GVKEQGAAAQGERKIYVSN 208
++ R++ C LA++ + P G RKI+V
Sbjct: 228 IDGRVSLCNLAALRSSQPLPARAGGGMQGGAMQGGAGGMMGGAVGGSGEDVSARKIFVRG 287
Query: 209 VPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE 268
+ D E LR F +FGE+E + D +GKS+G+ ++ A A+ EP+K +
Sbjct: 288 LSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLD 347
Query: 269 GHQLQCQKAAEG-KNRTSSN 287
G C AAEG NR + N
Sbjct: 348 GRLTHCNIAAEGASNRKNQN 367
>gi|325185806|emb|CCA20310.1| hypothetical protein SELMODRAFT_151090 [Albugo laibachii Nc14]
gi|325191562|emb|CCA25854.1| hypothetical protein SELMODRAFT_163608 [Albugo laibachii Nc14]
Length = 276
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 129/251 (51%), Gaps = 34/251 (13%)
Query: 52 SSSSESESEPESESISSLLEPYSKDQLIDLIAAA-----------------ATKIPLLHD 94
S+ ++ +E +S ++ LL +S++QL ++ +A A + +++
Sbjct: 15 STCAKQRNEGDSFNVYQLLSSFSREQLTAILMSAYVQNVSCEAFDLAAFYFAAQYDTIYN 74
Query: 95 HILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
I A+ D S RK+FV GL W+T+ E+L +AFG G+IEE ++ DK +GK+KG+ F+
Sbjct: 75 EIRTVANADTSHRKVFVRGLAWNTSSETLRNAFGKFGDIEEGAVIFDKCSGKSKGYGFVT 134
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQG-------------AAAQG- 200
F +AA A+ +++ R C LAS+ P V E A+ G
Sbjct: 135 FAEMEAAQFAVDQHIVEIDGRKTMCNLASMRPDSTQVFESNPSEALYPMDRREIMASSGF 194
Query: 201 ---ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGAR 257
+RK++V + E R FE++G+IE I D TGKS+GF Y++ A
Sbjct: 195 DDSDRKLFVRGLAWITSDETFRREFEKYGDIEGASIARDRKTGKSKGFGFVTYRSNASAH 254
Query: 258 KALEEPQKMFE 268
+AL++PQK+ +
Sbjct: 255 RALQQPQKIID 265
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 191 VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
++ A RK++V + + E LR F +FG+IE G + FD +GKS+G+ +
Sbjct: 76 IRTVANADTSHRKVFVRGLAWNTSSETLRNAFGKFGDIEEGAVIFDKCSGKSKGYGFVTF 135
Query: 251 KTVEGARKALEEPQKMFEGHQLQCQKAA 278
+E A+ A+++ +G + C A+
Sbjct: 136 AEMEAAQFAVDQHIVEIDGRKTMCNLAS 163
>gi|302804260|ref|XP_002983882.1| hypothetical protein SELMODRAFT_27842 [Selaginella moellendorffii]
gi|300148234|gb|EFJ14894.1| hypothetical protein SELMODRAFT_27842 [Selaginella moellendorffii]
Length = 146
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 93/162 (57%), Gaps = 18/162 (11%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TT ++L AF GEIEE ++ DK TGK++GF FI FK +A +ALK
Sbjct: 1 KLFVRGLAWETTSQALRDAFQHYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALKE 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P + ++ V E +A Q +RK+Y+ + + E L F ++GE
Sbjct: 61 PSKTID-----------------VSESRSADQAQRKLYIGGLSYETSNETLLNIFSQYGE 103
Query: 228 IETGPIGFDITTGKS-RGFAIFVYKTVEGARKALEEPQKMFE 268
IE G + +D T KS RGFA YK+VE ARKA+++P K E
Sbjct: 104 IEEGAVAYDKNTNKSRRGFAFITYKSVEAARKAIDDPNKTIE 145
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 83 AAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDK 142
A A K P + E+ D +QRK+++ GL ++T+ E+LL+ F GEIEE + DK
Sbjct: 54 AQRALKEPSKTIDVSESRSADQAQRKLYIGGLSYETSNETLLNIFSQYGEIEEGAVAYDK 113
Query: 143 VTGKA-KGFAFIVFKTRKAAVKALKNPQRKV 172
T K+ +GFAFI +K+ +AA KA+ +P + +
Sbjct: 114 NTNKSRRGFAFITYKSVEAARKAIDDPNKTI 144
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + + LR F+ +GEIE G + D TGKSRGF +K ++ A++AL+E
Sbjct: 1 KLFVRGLAWETTSQALRDAFQHYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALKE 60
Query: 263 PQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQG 309
P K + + + A+ K S ++N+ + I Q + +G
Sbjct: 61 PSKTIDVSESRSADQAQRKLYIGGLSYETSNETLLNIFSQYGEIEEG 107
>gi|224088210|ref|XP_002308372.1| predicted protein [Populus trichocarpa]
gi|222854348|gb|EEE91895.1| predicted protein [Populus trichocarpa]
Length = 361
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 116/212 (54%), Gaps = 16/212 (7%)
Query: 57 SESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETA-DRDVSQRKIFVHGLG 115
+E+ + + SLL+P SK QL+DL+ +++ L D L +A R VS +
Sbjct: 18 AETLTTQDYLRSLLDPLSKPQLVDLL----SRLCLCGDISLVSAIGRFVSDSSSVCCVI- 72
Query: 116 WDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNR 175
DT E F GEIEE ++ DK TGK++G+ FI +K ++A AL P + ++ R
Sbjct: 73 -DTVHE-----FRMHGEIEEGSVIYDKATGKSRGYGFITYKHMESAQSALGAPSKLIDGR 126
Query: 176 MASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGF 235
MA C LA G TG +RK+Y+ + ++ E L FF R+GEIE G + +
Sbjct: 127 MAVCNLACEGLTGATTTPD----LTQRKLYIGGLSPEISSEMLLHFFGRYGEIEEGSVAY 182
Query: 236 DITTGKSRGFAIFVYKTVEGARKALEEPQKMF 267
+ T +SRGF YKTVE A+KA+++P K+
Sbjct: 183 NKDTNESRGFGFVTYKTVEAAKKAIDDPHKLL 214
>gi|326527091|dbj|BAK04487.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 191
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 94/183 (51%), Gaps = 6/183 (3%)
Query: 119 TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMAS 178
T +L +AF G ++EC V + TG + FI F+ R +A AL + ++V R A
Sbjct: 9 TSAALAAAFVPFGVLDECHAVAHRTTGPCRCCGFITFRRRPSARCALADSSKRVGARPAP 68
Query: 179 CQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDIT 238
CQ S PTGP G RKI V VP LR FF FGEIE G + D
Sbjct: 69 CQFTSTCPTGPFPGGSG------RKILVDRVPARTSINDLRWFFPEFGEIEAGSLVADHA 122
Query: 239 TGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMM 298
TG+ RG+A F+YK+ EG KALEEP+K+F+G + C+ A R + + + Q
Sbjct: 123 TGQFRGYATFLYKSPEGIAKALEEPRKVFDGCEFHCRHAQMQTKRNCATADPEDTGYQRN 182
Query: 299 IQK 301
+ +
Sbjct: 183 VTR 185
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
S RKI V + T+ L F GEIE LV D TG+ +G+A ++K+ + KA
Sbjct: 84 SGRKILVDRVPARTSINDLRWFFPEFGEIEAGSLVADHATGQFRGYATFLYKSPEGIAKA 143
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
L+ P++ + C+ A + K A A E Y NV R
Sbjct: 144 LEEPRKVFDGCEFHCRHAQM-----QTKRNCATADPEDTGYQRNVTR 185
>gi|255579005|ref|XP_002530354.1| conserved hypothetical protein [Ricinus communis]
gi|223530101|gb|EEF32015.1| conserved hypothetical protein [Ricinus communis]
Length = 534
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 4/162 (2%)
Query: 123 LLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182
L AF GEIEE ++ DK TGK++G+ FI +K ++ AL+ P + ++ R+A C LA
Sbjct: 282 LAQAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQIALRAPSKLIDGRLAVCNLA 341
Query: 183 SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKS 242
G TG A +RK+Y+ + ++ E L FF R GEIE G + +D T +S
Sbjct: 342 CEGLTGASTTPDLA----QRKLYIGGLSPEITSEMLLNFFGRHGEIEEGSVAYDKDTNES 397
Query: 243 RGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284
RGF YKTVE A+KA+++PQK+ G + + A K +T
Sbjct: 398 RGFGFVTYKTVEAAKKAIDDPQKVLGGRSIIVKLADTHKGKT 439
>gi|51969640|dbj|BAD43512.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51969710|dbj|BAD43547.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 242
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 69/86 (80%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
+ RKIFV+GL W+TT+E+L+ F G GEIEEC +VIDK TGKAKGF F++FKTRK A +A
Sbjct: 1 THRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 60
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPG 190
LK P++++ NR A+CQLAS+GP G
Sbjct: 61 LKEPKKRILNRTATCQLASMGPAASG 86
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 110/246 (44%), Gaps = 31/246 (12%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
RKI+V +P + +E L G FE +GEIE + D TGK++GF ++KT +GA++AL
Sbjct: 2 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 61
Query: 261 EEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQEQ 320
+EP+K CQ A+ G +++ + + I QQ Q Q
Sbjct: 62 KEPKKRILNRTATCQLASMGP---AASGKGHDQPGPVKISMGSMANHGQPQQQQVQGQHV 118
Query: 321 VLAAMAAAQNLALFGQHPGMHPLYG-GFLVNP----------GLINPMVAGALHQGAIPA 369
AA L Q+ HPLYG G L NP G + PM+AGAL G + +
Sbjct: 119 FNGGGMAASPFMLGNQY---HPLYGAGMLGNPALAAAAAAGGGYMYPMLAGALAHGGLGS 175
Query: 370 SNVGA--MAGSSVLGSFGPGAAQGL------QQQQHVYPNAPQSKSQGT------GGGSF 415
V + M G V S G L Q YP++ +GT GG SF
Sbjct: 176 DMVQSSQMGGIGVDPSVGAAGLSALGSCFRGQSLPSTYPDSDAGGKRGTGKDSDAGGSSF 235
Query: 416 PGYTSY 421
GY++Y
Sbjct: 236 HGYSNY 241
>gi|147864061|emb|CAN83223.1| hypothetical protein VITISV_031367 [Vitis vinifera]
Length = 294
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 97/220 (44%), Gaps = 52/220 (23%)
Query: 64 ESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESL 123
E + LL+P SK QL+DL++ ++ P + + I A D RK+FV GL W+TT E+L
Sbjct: 22 EELKLLLDPLSKSQLVDLLSKLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETL 81
Query: 124 LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ RMA C LA
Sbjct: 82 CA------------------------------------------------GRMAVCNLAC 93
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
G +G Q +RK+Y+ + DV E L FF R GEIE G + +D T +SR
Sbjct: 94 EGLSGASTTPD----QAQRKLYIGGLAPDVTSEVLLSFFGRHGEIEEGSVAYDKETNESR 149
Query: 244 GFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
GF YKTVE A+KA+++PQK G + + A K +
Sbjct: 150 GFGFVTYKTVEAAKKAIDDPQKFLGGRSIIVKLADSHKGK 189
>gi|209875595|ref|XP_002139240.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209554846|gb|EEA04891.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 551
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 8/228 (3%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
E ES+ +L P SKDQLI+L+A A ++L S R+++V L + E
Sbjct: 52 ELESLRRVLTPLSKDQLIELLAGACVDNQATLQNVLSVIYESRSHRRLYVKNLPFSVCTE 111
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
S++ F G++EE ++ K GK++G+AF+ +KT ++A A K VN R+ +L
Sbjct: 112 SVIKLFSQFGDVEEG--IVLKRNGKSRGYAFVTYKTIESAQLACK-ESITVNGRVLMVKL 168
Query: 182 ASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGK 241
A+ P E + RK++V N+ ++ L F ++GE+E I G+
Sbjct: 169 AA----DPFPFEARRSDALRRKLFVRNLGFTTTEDSLSAVFGKYGELEESVI-LRTREGE 223
Query: 242 SRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSS 289
SRG+ + E KAL++P + +G + +A EG+ R+S NS+
Sbjct: 224 SRGYGFVTFVNTESTMKALQQPHHLVDGRLVFVHQAIEGRIRSSRNSN 271
>gi|383139840|gb|AFG51193.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
Length = 137
Score = 105 bits (263), Expect = 4e-20, Method: Composition-based stats.
Identities = 56/109 (51%), Positives = 77/109 (70%)
Query: 48 SSSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQR 107
+S SSE+E E + E + LL P+SK+QLID+I+ A K P L ++I + AD+D + R
Sbjct: 25 NSEADGSSEAEVEEDEEDLKKLLGPFSKEQLIDIISENAKKDPQLVENIRKLADKDPAHR 84
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
KIFV GLGWDTT E+L S F GE+EEC +++DK TGK+KG+ F+ FK
Sbjct: 85 KIFVRGLGWDTTSETLKSVFSQYGELEECTVIVDKGTGKSKGYGFVTFK 133
Score = 41.2 bits (95), Expect = 1.1, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEG 255
RKI+V + D E L+ F ++GE+E + D TGKS+G+ +K ++G
Sbjct: 82 AHRKIFVRGLGWDTTSETLKSVFSQYGELEECTVIVDKGTGKSKGYGFVTFKHMDG 137
>gi|66357960|ref|XP_626158.1| T8M16_190-plant like protein with RRM domain [Cryptosporidium
parvum Iowa II]
gi|46227101|gb|EAK88051.1| T8M16_190-plant like protein with RRM domain [Cryptosporidium
parvum Iowa II]
Length = 600
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 15/252 (5%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
E E +L P SKDQL++L+A A + + + S R++++ L + E
Sbjct: 52 EKEDFRRVLTPLSKDQLVELLAGACIEDQKILQRVFAVICESRSHRRLYIKNLPFSANTE 111
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
S++ F G++EE ++ K GK++G+AF+ FKT ++A+ A KNP ++ R +L
Sbjct: 112 SVIEVFSQFGDVEEG--IVLKKDGKSRGYAFVTFKTIESALLACKNPV-SMSGRFLMVKL 168
Query: 182 ASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGK 241
A+ P E + RK++V N+ + ++ L ++GE+E I +G+
Sbjct: 169 AA----DPFPFETKRSDAIRRKLFVRNLGFETNEDSLSEVMGQYGELEESVI-LRTKSGE 223
Query: 242 SRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS-------NSSSSNNQ 294
S+G+ + + E KAL++P + +G + +A EGK R + N+S +
Sbjct: 224 SKGYGFVTFASSEATIKALQQPHHLIDGRLVFVHQAIEGKTRVTKNKEVYLQNNSKQTYE 283
Query: 295 AQMMIQKQQQPM 306
++M K Q PM
Sbjct: 284 NKVMESKDQLPM 295
>gi|361070119|gb|AEW09371.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139841|gb|AFG51194.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139842|gb|AFG51195.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139843|gb|AFG51196.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139844|gb|AFG51197.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139845|gb|AFG51198.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139846|gb|AFG51199.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139847|gb|AFG51200.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139848|gb|AFG51201.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139849|gb|AFG51202.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139850|gb|AFG51203.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139851|gb|AFG51204.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139852|gb|AFG51205.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139853|gb|AFG51206.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139854|gb|AFG51207.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139855|gb|AFG51208.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139856|gb|AFG51209.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
gi|383139857|gb|AFG51210.1| Pinus taeda anonymous locus UMN_7377_01 genomic sequence
Length = 137
Score = 105 bits (262), Expect = 5e-20, Method: Composition-based stats.
Identities = 56/109 (51%), Positives = 77/109 (70%)
Query: 48 SSSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQR 107
+S SSE+E E + E + LL P+SK+QLID+I+ A K P L ++I + AD+D + R
Sbjct: 25 NSEADGSSEAEVEEDEEDLKKLLGPFSKEQLIDIISENAKKDPQLVENIRKLADKDPAHR 84
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
KIFV GLGWDTT E+L S F GE+EEC +++DK TGK+KG+ F+ FK
Sbjct: 85 KIFVRGLGWDTTSEALKSVFSQYGELEECTVIVDKGTGKSKGYGFVTFK 133
Score = 41.2 bits (95), Expect = 1.2, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEG 255
RKI+V + D E L+ F ++GE+E + D TGKS+G+ +K ++G
Sbjct: 82 AHRKIFVRGLGWDTTSEALKSVFSQYGELEECTVIVDKGTGKSKGYGFVTFKHMDG 137
>gi|67615331|ref|XP_667430.1| RNA-binding protein [Cryptosporidium hominis TU502]
gi|54658566|gb|EAL37200.1| RNA-binding protein [Cryptosporidium hominis]
Length = 599
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 15/252 (5%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
E E +L P SKDQL++L+A A + + + S R++++ L + E
Sbjct: 52 EKEDFRRVLTPLSKDQLVELLAGACIEDQKILQRVFAVICESRSHRRLYIKNLPFSANTE 111
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
S++ F G++EE ++ K GK++G+AF+ FKT ++A+ A KNP ++ R +L
Sbjct: 112 SVIEVFSQFGDVEEG--IVLKKDGKSRGYAFVTFKTIESALLACKNPV-SMSGRFLMVKL 168
Query: 182 ASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGK 241
A+ P E + RK++V N+ + ++ L ++GE+E I +G+
Sbjct: 169 AA----DPFPFETKRSDAIRRKLFVRNLGFETNEDSLSEVMGQYGELEESVI-LRTKSGE 223
Query: 242 SRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS-------NSSSSNNQ 294
S+G+ + + E KAL++P + +G + +A EGK R + NSS +
Sbjct: 224 SKGYGFVTFASSEATIKALQQPHHLIDGRLVFVHQAIEGKTRMTKNKEVYLQNSSKQTYE 283
Query: 295 AQMMIQKQQQPM 306
++M K Q P+
Sbjct: 284 NKVMESKDQLPL 295
>gi|224284344|gb|ACN39907.1| unknown [Picea sitchensis]
Length = 536
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 58/79 (73%)
Query: 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R+IYV NVP D++ L FF +G+IE GP GFD TGKS+G+++ +Y+T+E A +ALE
Sbjct: 241 RRIYVGNVPDDMKPATLTSFFSNYGDIEEGPGGFDRNTGKSKGYSLILYRTIEAANRALE 300
Query: 262 EPQKMFEGHQLQCQKAAEG 280
+P K +GHQL C+ AAEG
Sbjct: 301 DPVKSIDGHQLFCKLAAEG 319
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 56 ESESEPE--SESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHG 113
E + PE E + LL P +K+QL D++ A L D + + +++D+S RK+FV G
Sbjct: 15 EESNTPEITEEVAAKLLVPLTKEQLADILKPAIINHSDLLDKVRQISNQDISLRKLFVRG 74
Query: 114 LGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVN 173
LG++TT ES S F GE+ + +V+DK++GK KG+ F+ ++ A+ AL+ P ++++
Sbjct: 75 LGYETTTESFKSVFAQHGEVIDAVVVVDKISGKNKGYGFVTYRHLDGALSALQEPSKEMD 134
Query: 174 NRMASCQLASVG 185
R+ LA+ G
Sbjct: 135 GRIVVSNLAAAG 146
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ A D S R+I+V + D +L S F G+IEE D+ TGK+KG++ I+++
Sbjct: 231 FQPATTDASLRRIYVGNVPDDMKPATLTSFFSNYGDIEEGPGGFDRNTGKSKGYSLILYR 290
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAA 197
T +AA +AL++P + ++ C+LA+ G GV +QG A
Sbjct: 291 TIEAANRALEDPVKSIDGHQLFCKLAAEGLKQKGVTKQGQA 331
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RK++V + + E + F + GE+ + D +GK++G+ Y+ ++GA AL+
Sbjct: 68 RKLFVRGLGYETTTESFKSVFAQHGEVIDAVVVVDKISGKNKGYGFVTYRHLDGALSALQ 127
Query: 262 EPQKMFEGHQLQCQKAAEG 280
EP K +G + AA G
Sbjct: 128 EPSKEMDGRIVVSNLAAAG 146
>gi|219363315|ref|NP_001136724.1| uncharacterized protein LOC100216861 [Zea mays]
gi|194696774|gb|ACF82471.1| unknown [Zea mays]
gi|414883906|tpg|DAA59920.1| TPA: RNA-binding protein [Zea mays]
Length = 469
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 26/195 (13%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ETAD K+FV G+ W+T ++ L FG GE+ E ++ D+ TG+A+GF F+VF
Sbjct: 1 METADY---SGKLFVGGISWETDEDRLREYFGRFGEVTEAVIMRDRSTGRARGFGFVVFA 57
Query: 157 TRKAA--------------VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGER 202
A V+A K R ++ ++ +S+G GPG R
Sbjct: 58 DATVAERVTIEKHMIDGRMVEAKKAVPRDDHSIVSKSNTSSIGSPGPGRT---------R 108
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P +V + RG+FE+FG I + +D T + RGF Y + + KAL +
Sbjct: 109 KIFVGGLPSNVTEADFRGYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHK 168
Query: 263 PQKMFEGHQLQCQKA 277
G ++ +KA
Sbjct: 169 SFHELNGKMVEVKKA 183
>gi|195624752|gb|ACG34206.1| RNA-binding protein [Zea mays]
Length = 469
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 26/195 (13%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+ETAD K+FV G+ W+T ++ L FG GE+ E ++ D+ TG+A+GF F+VF
Sbjct: 1 METADY---SGKLFVGGISWETDEDRLREYFGRFGEVTEAVIMRDRSTGRARGFGFVVFA 57
Query: 157 TRKAA--------------VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGER 202
A V+A K R ++ ++ +S+G GPG R
Sbjct: 58 DATVAERVTIEKHMIDGRMVEAKKAVPRDDHSIVSKSNTSSIGSPGPGRT---------R 108
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P +V + RG+FE+FG I + +D T + RGF Y + + KAL +
Sbjct: 109 KIFVGGLPSNVTEADFRGYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHK 168
Query: 263 PQKMFEGHQLQCQKA 277
G ++ +KA
Sbjct: 169 SFHELNGKMVEVKKA 183
>gi|344284992|ref|XP_003414248.1| PREDICTED: hypothetical protein LOC100654996 [Loxodonta africana]
Length = 595
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 331 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 388
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 389 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 438
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 439 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 482
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%)
Query: 181 LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTG 240
L S + P E A + E K+++ + D K+ L+ +F +FGE+ + D TG
Sbjct: 316 LPSHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG 375
Query: 241 KSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
+SRGF ++K E K +++ + G + ++A K +
Sbjct: 376 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 418
>gi|301753349|ref|XP_002912535.1| PREDICTED: hypothetical protein LOC100472152 [Ailuropoda
melanoleuca]
Length = 642
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 378 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 435
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 436 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 485
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 486 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 529
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 369 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 428
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 429 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 459
>gi|148878011|gb|AAI46039.1| HNRNPD protein [Bos taurus]
Length = 355
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|395542043|ref|XP_003772944.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Sarcophilus
harrisii]
Length = 306
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 42 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 99
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 100 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 149
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 150 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 193
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 33 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 92
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 93 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 123
>gi|14110420|ref|NP_112738.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Homo sapiens]
gi|386782249|ref|NP_001247736.1| heterogeneous nuclear ribonucleoprotein D0 [Macaca mulatta]
gi|114594005|ref|XP_001143807.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Pan troglodytes]
gi|297673867|ref|XP_002814969.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Pongo abelii]
gi|402869391|ref|XP_003898746.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Papio anubis]
gi|13124489|sp|Q14103.1|HNRPD_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein D0;
Short=hnRNP D0; AltName: Full=AU-rich element
RNA-binding protein 1
gi|870749|dbj|BAA09525.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
gi|2815612|gb|AAC23474.1| heterogeneous nuclear ribonucleoprotein D [Homo sapiens]
gi|12803191|gb|AAH02401.1| Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Homo sapiens]
gi|63990762|gb|AAY40913.1| unknown [Homo sapiens]
gi|119626280|gb|EAX05875.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_d [Homo sapiens]
gi|119626281|gb|EAX05876.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_d [Homo sapiens]
gi|123982850|gb|ABM83166.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [synthetic construct]
gi|123997529|gb|ABM86366.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [synthetic construct]
gi|355687289|gb|EHH25873.1| Heterogeneous nuclear ribonucleoprotein D0 [Macaca mulatta]
gi|380783619|gb|AFE63685.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Macaca
mulatta]
gi|383417965|gb|AFH32196.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Macaca
mulatta]
gi|384940052|gb|AFI33631.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Macaca
mulatta]
Length = 355
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|410351149|gb|JAA42178.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 356
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 92 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 149
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 150 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 199
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 200 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 242
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 83 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 142
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 143 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 173
>gi|397524667|ref|XP_003832310.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein D0 [Pan paniscus]
Length = 355
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|395834193|ref|XP_003790096.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Otolemur garnettii]
Length = 355
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|334330945|ref|XP_001364005.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Monodelphis domestica]
Length = 376
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 112 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 169
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 170 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 219
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 220 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 262
>gi|332233349|ref|XP_003265864.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein D0 [Nomascus leucogenys]
Length = 355
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|426232266|ref|XP_004010154.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Ovis aries]
Length = 421
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 157 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 214
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 215 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 264
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 265 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 308
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 148 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 207
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 208 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 244
>gi|74001715|ref|XP_857957.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 11
[Canis lupus familiaris]
Length = 355
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|403263352|ref|XP_003924001.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Saimiri boliviensis boliviensis]
Length = 355
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|296196172|ref|XP_002745745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0, partial
[Callithrix jacchus]
Length = 325
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 61 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 118
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 119 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 168
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 169 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 211
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 52 SSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 111
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 112 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 142
>gi|119626277|gb|EAX05872.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_a [Homo sapiens]
Length = 377
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
>gi|440898655|gb|ELR50103.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Bos grunniens
mutus]
Length = 277
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 13 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 70
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 71 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 120
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 121 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 164
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 4 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 63
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 64 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 94
>gi|291401535|ref|XP_002717031.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D [Oryctolagus
cuniculus]
Length = 448
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
E A + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 181 EAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE 240
Query: 158 RKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEK 217
++ K + + K+N ++ + A T VK KI+V + D +EK
Sbjct: 241 SESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEK 290
Query: 218 LRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 291 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 335
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E AA + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 175 SSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 234
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
++K E K +++ + G + ++A K +
Sbjct: 235 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 271
>gi|351695030|gb|EHA97948.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Heterocephalus
glaber]
Length = 277
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 13 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 70
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 71 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 120
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 121 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 164
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 4 SSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 63
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 64 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 94
>gi|410957357|ref|XP_003985295.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0, partial
[Felis catus]
Length = 290
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 26 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 83
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 84 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 133
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 134 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 177
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 17 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 76
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 77 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 107
>gi|354497793|ref|XP_003511003.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Cricetulus griseus]
Length = 286
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 22 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 79
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 80 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 129
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 130 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 173
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 13 SSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 72
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 73 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 103
>gi|255642098|gb|ACU21315.1| unknown [Glycine max]
Length = 231
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 59/80 (73%)
Query: 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RK++V NVP ++ E+L F +FGE+E GP+GFD ++GKSRGFA FVYKT EGAR +L
Sbjct: 18 RKVFVGNVPFEISSERLLDEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLV 77
Query: 262 EPQKMFEGHQLQCQKAAEGK 281
EP K EGHQ+ C+ A + K
Sbjct: 78 EPLKTIEGHQVICKLAVDNK 97
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
DVS RK+FV + ++ + E LL F GE+EE L DK +GK++GFAF V+KT + A
Sbjct: 14 DVSLRKVFVGNVPFEISSERLLDEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGAR 73
Query: 163 KALKNPQRKVNNRMASCQLA 182
+L P + + C+LA
Sbjct: 74 ASLVEPLKTIEGHQVICKLA 93
>gi|444723247|gb|ELW63906.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Tupaia
chinensis]
Length = 296
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 44 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 101
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 102 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 151
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 152 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 194
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 35 SSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 94
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 95 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 125
>gi|116256512|ref|NP_001070733.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Mus musculus]
gi|33516945|sp|Q60668.2|HNRPD_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein D0;
Short=hnRNP D0; AltName: Full=AU-rich element
RNA-binding protein 1
gi|148688367|gb|EDL20314.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_d [Mus
musculus]
Length = 355
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+ K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 96 EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K+N ++ + A T VK KI+V + D +EK+R +F F
Sbjct: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGF 205
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GE+E+ + D T K RGF +K E +K +E
Sbjct: 206 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E AA + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|3747052|gb|AAC77437.1| estrogen response element binding protein [Saguinus oedipus]
Length = 358
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKGEEPVKKIMEK 242
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|355765936|gb|EHH62474.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Macaca
fascicularis]
Length = 302
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 38 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 95
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 96 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 145
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 146 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 188
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 29 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 88
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 89 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 119
>gi|345327974|ref|XP_001505245.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Ornithorhynchus anatinus]
Length = 306
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 42 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKEA 99
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 100 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 149
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 150 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 193
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 33 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 92
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 93 FVLFKEAESVDKVMDQKEHKLNGKVIDPKRA 123
>gi|426344801|ref|XP_004038942.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0, partial
[Gorilla gorilla gorilla]
Length = 291
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 27 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 84
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 85 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 134
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 135 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 178
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 18 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 77
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 78 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 108
>gi|116256518|ref|NP_001070734.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Mus musculus]
gi|148688364|gb|EDL20311.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_a [Mus
musculus]
Length = 336
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 68 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 128 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 177
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 178 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 222
>gi|14110417|ref|NP_112737.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Homo sapiens]
gi|332819428|ref|XP_003310368.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Pan
troglodytes]
gi|395735088|ref|XP_003776521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 4
[Pongo abelii]
gi|402869393|ref|XP_003898747.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Papio anubis]
gi|2815614|gb|AAC23476.1| heterogeneous nuclear ribonucleoprotein D [Homo sapiens]
gi|119626279|gb|EAX05874.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_c [Homo sapiens]
gi|119626283|gb|EAX05878.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_c [Homo sapiens]
gi|119626288|gb|EAX05883.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_c [Homo sapiens]
gi|158258851|dbj|BAF85396.1| unnamed protein product [Homo sapiens]
gi|380783615|gb|AFE63683.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Macaca
mulatta]
gi|383417961|gb|AFH32194.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Macaca
mulatta]
gi|384940048|gb|AFI33629.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Macaca
mulatta]
Length = 336
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 68 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 128 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 177
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 178 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 222
>gi|410351153|gb|JAA42180.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 337
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 69 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 128
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 129 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 178
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 179 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 223
>gi|395834195|ref|XP_003790097.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Otolemur garnettii]
Length = 336
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 68 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 128 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 177
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 178 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 222
>gi|403263354|ref|XP_003924002.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Saimiri boliviensis boliviensis]
Length = 336
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 68 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 128 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 177
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 178 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 222
>gi|74001707|ref|XP_535627.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Canis lupus familiaris]
Length = 336
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 68 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 128 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 177
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 178 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 222
>gi|211826253|gb|AAH11172.2| Hnrnpd protein [Mus musculus]
Length = 351
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+ K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 92 EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 151
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K+N ++ + A T VK KI+V + D +EK+R +F F
Sbjct: 152 DQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGF 201
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GE+E+ + D T K RGF +K E +K +E
Sbjct: 202 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 237
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E AA + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 78 SSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 137
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 138 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 168
>gi|431916163|gb|ELK16415.1| Heterogeneous nuclear ribonucleoprotein D0 [Pteropus alecto]
Length = 334
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 68 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 128 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 177
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 178 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 222
>gi|410292486|gb|JAA24843.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 355
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|13124487|sp|Q9JJ54.1|HNRPD_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein D0;
Short=hnRNP D0; AltName: Full=AU-rich element
RNA-binding protein 1
gi|9588096|dbj|BAB03465.1| RNA binding protein p45AUF1 [Rattus norvegicus]
Length = 353
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 89 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 196
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 197 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
>gi|194390332|dbj|BAG61935.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 35 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 94
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 95 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 144
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 145 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 189
>gi|157118269|ref|XP_001653144.1| heterogeneous nuclear ribonucleoprotein 27c [Aedes aegypti]
gi|94468876|gb|ABF18287.1| RNA-binding protein musashi/mRNA cleavage and polyadenylation
factor I complex subunit HRP1 [Aedes aegypti]
gi|108875770|gb|EAT39995.1| AAEL008257-PA [Aedes aegypti]
Length = 398
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 7/211 (3%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+TTQE+L FG GE+ +C ++ + TG+++GF F+ F
Sbjct: 14 DHEKGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNNETGRSRGFGFVTFADPDNVD 73
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
+AL+N ++ R + P P + G K+++ +P ++ + LR FF
Sbjct: 74 RALENGPHTLDGRTIDPK-----PCNPRSLHKPKRTGGYPKVFLGGLPPNITETDLRSFF 128
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
R+G + I +D KSRGF ++ +A E G Q++ +KA
Sbjct: 129 SRYGNVMEVVIMYDQEKKKSRGFGFLSFENEPAVERATAEHFVNISGKQVEIKKAE--PR 186
Query: 283 RTSSNSSSSNNQAQMMIQKQQQPMLQGQQQG 313
S N++S N + Q PM GQ G
Sbjct: 187 DGSGNNNSMNADSYQWGSPQAPPMGNGQMGG 217
>gi|395834191|ref|XP_003790095.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Otolemur garnettii]
Length = 306
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|127138710|ref|NP_077380.2| heterogeneous nuclear ribonucleoprotein D0 isoform a [Rattus
norvegicus]
gi|149046816|gb|EDL99590.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_a [Rattus
norvegicus]
Length = 353
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 89 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 196
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 197 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
>gi|14110414|ref|NP_002129.2| heterogeneous nuclear ribonucleoprotein D0 isoform c [Homo sapiens]
gi|114594009|ref|XP_001143722.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Pan troglodytes]
gi|395735083|ref|XP_003776519.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Pongo abelii]
gi|402869389|ref|XP_003898745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Papio anubis]
gi|870745|dbj|BAA09523.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
gi|2815613|gb|AAC23475.1| heterogeneous nuclear ribonucleoprotein D [Homo sapiens]
gi|18645125|gb|AAH23977.1| Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Homo sapiens]
gi|19683928|gb|AAH26015.1| Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Homo sapiens]
gi|119626282|gb|EAX05877.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_e [Homo sapiens]
gi|119626286|gb|EAX05881.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_e [Homo sapiens]
gi|119626287|gb|EAX05882.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_e [Homo sapiens]
gi|208966456|dbj|BAG73242.1| heterogeneous nuclear ribonucleoprotein D [synthetic construct]
gi|380783617|gb|AFE63684.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Macaca
mulatta]
gi|383417963|gb|AFH32195.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Macaca
mulatta]
gi|384940050|gb|AFI33630.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Macaca
mulatta]
gi|410265342|gb|JAA20637.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
gi|410292488|gb|JAA24844.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 306
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|410351151|gb|JAA42179.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 307
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 92 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 149
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 150 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 199
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 200 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 242
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 83 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 142
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 143 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 173
>gi|148230364|ref|NP_001091533.1| heterogeneous nuclear ribonucleoprotein D0 [Bos taurus]
gi|146231918|gb|ABQ13034.1| heterogeneous nuclear ribonucleoprotein D [Bos taurus]
gi|296486390|tpg|DAA28503.1| TPA: heterogeneous nuclear ribonucleoprotein D [Bos taurus]
Length = 306
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|170060137|ref|XP_001865670.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
gi|167878677|gb|EDS42060.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
Length = 402
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 7/211 (3%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+TTQE+L FG GE+ +C ++ + TG+++GF F+ F +
Sbjct: 15 DHEKGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNNETGRSRGFGFVTFADPENVE 74
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
+AL+N ++ R + P P + G K+++ +P ++ + LR FF
Sbjct: 75 RALENGPHTLDGRTIDPK-----PCNPRSLHKPKRTGGYPKVFLGGLPPNITETDLRSFF 129
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
R+G + I +D KSRGF ++ +A E G Q++ +KA
Sbjct: 130 SRYGNVMEVVIMYDQEKKKSRGFGFLSFENEAAVERATAEHFVNISGKQVEIKKAE--PR 187
Query: 283 RTSSNSSSSNNQAQMMIQKQQQPMLQGQQQG 313
S N++S N + Q PM GQ G
Sbjct: 188 DGSGNNNSMNADSYQWGSPQAPPMGNGQMGG 218
>gi|403263350|ref|XP_003924000.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Saimiri boliviensis boliviensis]
Length = 306
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|387016396|gb|AFJ50317.1| Heterogeneous nuclear ribonucleoprotein D0 isoform b [Crotalus
adamanteus]
Length = 330
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+FV GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 62 IDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPITGRSRGFGFVLFK 121
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + K+N ++ + A T VK KI+V + D +E
Sbjct: 122 ESESVEKVTDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 171
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 172 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKDEEAVKKIME 216
>gi|74001695|ref|XP_848950.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Canis lupus familiaris]
Length = 306
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|2773158|gb|AAB96683.1| heterogeneous nuclear ribonucleoprotein D0B [Homo sapiens]
Length = 298
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 83 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 140
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 141 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 190
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 191 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 233
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 74 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 133
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 134 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 164
>gi|224049399|ref|XP_002190694.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Taeniopygia guttata]
gi|449499942|ref|XP_004175399.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Taeniopygia
guttata]
Length = 318
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 10/166 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 50 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 109
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 110 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 159
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K+R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 160 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 205
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 145 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 204
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 205 KKYHNVG--LSKCEI 217
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
+ E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K
Sbjct: 57 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 116
Query: 259 ALEEPQKMFEGHQLQCQKA 277
+++ + G + ++A
Sbjct: 117 VMDQKEHKLNGKVIDPKRA 135
>gi|410292490|gb|JAA24845.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 336
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 68 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 128 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 177
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 178 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 222
>gi|870743|dbj|BAA09522.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
Length = 267
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 10/155 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 10 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 69
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE
Sbjct: 70 KEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGE 119
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+E+ + D T K RGF +K E +K +E+
Sbjct: 120 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 154
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 94 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 153
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 154 KKYHNVG--LSKCEI 166
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
+ E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K
Sbjct: 6 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 65
Query: 259 ALEEPQKMFEGHQLQCQKA 277
+++ + G + ++A
Sbjct: 66 VMDQKEHKLNGKVIDPKRA 84
>gi|119626284|gb|EAX05879.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_f [Homo sapiens]
Length = 277
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 62 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 119
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 120 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 169
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 170 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 212
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 53 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 112
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 113 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 143
>gi|146197797|dbj|BAF57616.1| pRM10 protein [Dugesia japonica]
Length = 325
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 89/167 (53%), Gaps = 12/167 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
D I D D RK+FV GL W+TT+E L + F G++ C + +DK+TG ++GF F+
Sbjct: 59 DSINNKVDEDDDSRKLFVGGLSWETTEEDLKNYFETWGKVAHCVIKLDKMTGNSRGFGFV 118
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
T + K L+ P+ ++ N+ + A PT + +KI+V + +V
Sbjct: 119 TMDTEDSLKKVLEVPEHRLKNKKIDPKPAK--PT----------KEPNKKIFVGGLSPEV 166
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+E+++ +F ++G +E+ + FD + GK + + + T + A+ A+
Sbjct: 167 TEEQIKEYFSQYGSVESVDLPFDTSKGKRKPYVFLSFTTEDAAKNAI 213
>gi|116256514|ref|NP_031542.2| heterogeneous nuclear ribonucleoprotein D0 isoform c [Mus musculus]
gi|29145079|gb|AAH49098.1| Heterogeneous nuclear ribonucleoprotein D [Mus musculus]
gi|148688366|gb|EDL20313.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_c [Mus
musculus]
Length = 306
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 10/154 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGE 207
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
+E+ + D T K RGF +K E +K +E
Sbjct: 208 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E AA + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|347966814|ref|XP_321133.5| AGAP001930-PA [Anopheles gambiae str. PEST]
gi|347966816|ref|XP_003435970.1| AGAP001930-PB [Anopheles gambiae str. PEST]
gi|333469887|gb|EAA00972.5| AGAP001930-PA [Anopheles gambiae str. PEST]
gi|333469888|gb|EGK97443.1| AGAP001930-PB [Anopheles gambiae str. PEST]
Length = 412
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 6/211 (2%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T+ E+L F GE+ +C ++ + TG+++GF F+ F +
Sbjct: 14 DHEKGKLFVGGLSWETSHENLQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPENVE 73
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
+AL+N ++ R + P P + + G K+++ +P ++ + LR FF
Sbjct: 74 RALENGPHTLDGRTIDPK-----PCNPRSQHKPKRTGGYPKVFLGGLPPNITETDLRSFF 128
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
R+G + I +D KSRGF ++ +A + G Q++ +K AE ++
Sbjct: 129 CRYGTVMEVVIMYDQEKKKSRGFGFLSFENESAVERATTDHFVHISGKQVEVKK-AEPRD 187
Query: 283 RTSSNSSSSNNQAQMMIQKQQQPMLQGQQQG 313
+NS+S N + Q PM GQ G
Sbjct: 188 GNQNNSNSMNTDSYQWGSPQAPPMGNGQMGG 218
>gi|508270|gb|AAA64654.1| A+U-rich RNA-binding protein [Mus musculus]
Length = 269
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+ K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 65 EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 124
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K+N ++ + A T VK KI+V + D +EK+R +F F
Sbjct: 125 DQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGF 174
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GE+E+ + D T K RGF +K E +K +E
Sbjct: 175 GEVESIELPMDKKTNKRRGFCFITFKEEEPVKKIME 210
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +DK T K +GF FI FK + K ++
Sbjct: 151 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDKKTNKRRGFCFITFKEEEPVKKIME 210
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 211 KKYHNVG--LSKCEI 223
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E AA + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 51 SSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 110
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 111 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 141
>gi|9588098|dbj|BAB03466.1| RNA binding protein p42 AUF1 [Rattus norvegicus]
Length = 334
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 66 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFK 125
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 126 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 175
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 176 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
>gi|449499935|ref|XP_004175398.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Taeniopygia
guttata]
Length = 340
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 10/155 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 61 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 120
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE
Sbjct: 121 KEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGE 170
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+E+ + D T K RGF +K E +K +E+
Sbjct: 171 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 205
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 145 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 204
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 205 KKYHNVG--LSKCEI 217
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
+ E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K
Sbjct: 57 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 116
Query: 259 ALEEPQKMFEGHQLQCQKA 277
+++ + G + ++A
Sbjct: 117 VMDQKEHKLNGKVIDPKRA 135
>gi|127139089|ref|NP_001076008.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Rattus
norvegicus]
gi|149046818|gb|EDL99592.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_c [Rattus
norvegicus]
gi|149046819|gb|EDL99593.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_c [Rattus
norvegicus]
Length = 334
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 66 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFK 125
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 126 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 175
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 176 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
>gi|433344|gb|AAC50056.1| p37 AUF1 [Homo sapiens]
Length = 286
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 66 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 125
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 126 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 175
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 176 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 161 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 221 KKYHNVG--LSKCEI 233
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
+ E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K
Sbjct: 73 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 132
Query: 259 ALEEPQKMFEGHQLQCQKA 277
+++ + G + ++A
Sbjct: 133 VMDQKEHKLNGKVIDPKRA 151
>gi|181914|gb|AAA35781.1| DNA-binding protein [Homo sapiens]
Length = 328
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 70 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 127
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 128 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 177
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
R +F FGE+E+ + D T K RG +K E +K +E+
Sbjct: 178 REYFGGFGEVESIELPMDNKTNKRRGLCFITFKEEEPVKKIMEK 221
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 61 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 120
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 121 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 151
>gi|116256516|ref|NP_001070735.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Mus musculus]
gi|148688365|gb|EDL20312.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_b [Mus
musculus]
Length = 287
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 68 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 128 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 177
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 178 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 222
>gi|74001711|ref|XP_857875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 9
[Canis lupus familiaris]
Length = 287
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 68 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 128 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 177
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 178 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 222
>gi|51477708|ref|NP_001003810.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Homo sapiens]
gi|332819424|ref|XP_003310366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Pan
troglodytes]
gi|395735086|ref|XP_003776520.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Pongo abelii]
gi|119626285|gb|EAX05880.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_g [Homo sapiens]
Length = 287
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 68 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 128 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 177
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 178 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 222
>gi|9588100|dbj|BAB03467.1| RNA binding protein p40 AUF1 [Rattus norvegicus]
Length = 304
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 89 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 196
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 197 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
>gi|71896731|ref|NP_001026314.1| heterogeneous nuclear ribonucleoprotein D0 [Gallus gallus]
gi|326918726|ref|XP_003205639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Meleagris gallopavo]
gi|53135954|emb|CAG32472.1| hypothetical protein RCJMB04_26e18 [Gallus gallus]
Length = 257
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 10/154 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE+
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGAFGEV 110
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
E+ + D T K RGF +K E +K +E+
Sbjct: 111 ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 143
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 144 KKYHNVG--LSKCEI 156
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 204 IYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263
+++ + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K +++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 264 QKMFEGHQLQCQKA 277
+ G + ++A
Sbjct: 61 EHKLNGKVIDPKRA 74
>gi|71896513|ref|NP_001025523.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Xenopus (Silurana)
tropicalis]
gi|52355236|gb|AAU44811.1| AUF1 [Xenopus (Silurana) tropicalis]
Length = 295
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 10/155 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK + K ++
Sbjct: 39 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESEGVDKVMEQ 98
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE
Sbjct: 99 KEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGTFGE 148
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
IE + D T K RGF +K + +K +E+
Sbjct: 149 IEAIELPMDNKTNKRRGFCFITFKEEDPVKKIMEK 183
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FG GEIE +L +D T K +GF FI FK K ++
Sbjct: 123 KKIFVGGLSPDTPEEKIREYFGTFGEIEAIELPMDNKTNKRRGFCFITFKEEDPVKKIME 182
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 183 KKYHNVG--LSKCEI 195
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 190 GVK-EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIF 248
GVK + + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 25 GVKIDASKTEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 84
Query: 249 VYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K EG K +E+ + G + ++A
Sbjct: 85 LFKESEGVDKVMEQKEHKLNGKVIDPKRA 113
>gi|127139464|ref|NP_001076009.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Rattus
norvegicus]
gi|149046817|gb|EDL99591.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_b [Rattus
norvegicus]
Length = 304
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 89 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 196
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 197 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
>gi|327273004|ref|XP_003221273.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like [Anolis
carolinensis]
Length = 334
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 10/155 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF FI+FK ++ K +
Sbjct: 78 KMFIGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPITGRSRGFGFILFKEAESVDKVMDQ 137
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T +K KI+V + D +EK+R +F FGE
Sbjct: 138 KEHKLNGKVIDPKRAKAMKTKEPIK----------KIFVGGLSPDTPEEKIREYFGGFGE 187
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+E+ + D T K RGF +K E +K +E+
Sbjct: 188 VESIELPMDNKTNKRRGFCFITFKDEEPVKKIMEK 222
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 162 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKDEEPVKKIME 221
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 222 KKYHNVG--LSKCEI 234
>gi|158296283|ref|XP_001237856.2| AGAP006668-PA [Anopheles gambiae str. PEST]
gi|157016437|gb|EAU76642.2| AGAP006668-PA [Anopheles gambiae str. PEST]
Length = 360
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD +RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFIV+K +
Sbjct: 64 RD-DERKLFVGGLSWETTEKDLREHFGQYGEIESINVKTDPNTGRSRGFAFIVYKASDSI 122
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + + +NN+ + A P KI+V + D+ E+++ F
Sbjct: 123 DKVVAAGEHVLNNKKVDPKRAKARPG---------------KIFVGGLTSDISDEEIKTF 167
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF Y++V+ + L+ P++ G ++ +KA
Sbjct: 168 FGQFGTIVEVELPFDKQKNQRKGFCFITYESVQVVNELLKTPKQTIAGKEVDVKKAT 224
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 194 QGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTV 253
Q A ERK++V + + ++ LR F ++GEIE+ + D TG+SRGFA VYK
Sbjct: 60 QSNARDDERKLFVGGLSWETTEKDLREHFGQYGEIESINVKTDPNTGRSRGFAFIVYKAS 119
Query: 254 EGARKALEEPQKMFEGHQLQCQKA 277
+ K + + + ++ ++A
Sbjct: 120 DSIDKVVAAGEHVLNNKKVDPKRA 143
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRK-----IFVHGLGWDTTQESLLSAF 127
Y ID + AA +H+L D + K IFV GL D + E + + F
Sbjct: 116 YKASDSIDKVVAAG-------EHVLNNKKVDPKRAKARPGKIFVGGLTSDISDEEIKTFF 168
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G G I E +L DK + KGF FI +++ + + LK P++ + + + A+ P
Sbjct: 169 GQFGTIVEVELPFDKQKNQRKGFCFITYESVQVVNELLKTPKQTIAGKEVDVKKATPKP 227
>gi|344249843|gb|EGW05947.1| Heterogeneous nuclear ribonucleoprotein D0 [Cricetulus griseus]
Length = 257
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 10/154 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE+
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGEV 110
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
E+ + D T K RGF +K E +K +E+
Sbjct: 111 ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 143
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 144 KKYHNVG--LSKCEI 156
>gi|221054600|ref|XP_002258439.1| rna-binding protein [Plasmodium knowlesi strain H]
gi|193808508|emb|CAQ39211.1| rna-binding protein, putative [Plasmodium knowlesi strain H]
Length = 340
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 116/224 (51%), Gaps = 21/224 (9%)
Query: 50 SCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDV----S 105
S + + + E E+ES+ L+ P SK+QLID++A +A L+H I + + V S
Sbjct: 30 SANDKTVKDEESEAESLRRLIAPLSKEQLIDILATSA----LIHQDIRDKCNEAVASSPS 85
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
R++ V + + T E L F GEIE+ +V +K G++KG+ F+ FK ++ K L
Sbjct: 86 TRRLMVRNIPFSTRDEQFLKYFETFGEIEDGIIVREK-EGRSKGYGFVTFKFVESVQKCL 144
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
K+ ++N+ +L + T + K++V N+ + LRG FE++
Sbjct: 145 KSSH-TLDNKELQVRLVADPFTD----------HYQNKLFVRNLSQKTNVATLRGIFEKY 193
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEG 269
G++E I D GKS+G+ + + + A K +++P+++ +
Sbjct: 194 GKLEECVIIHD-NEGKSKGYGFLTFSSPKEAFKVMQQPERIIDN 236
>gi|870747|dbj|BAA09524.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
Length = 215
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 10/155 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 7 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 66
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE
Sbjct: 67 KEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGE 116
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+E+ + D T K RGF +K E +K +E+
Sbjct: 117 VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 151
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 91 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 150
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 151 KKYHNVG--LSKCEI 163
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGA 256
A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF ++K E
Sbjct: 1 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 60
Query: 257 RKALEEPQKMFEGHQLQCQKA 277
K +++ + G + ++A
Sbjct: 61 DKVMDQKEHKLNGKVIDPKRA 81
>gi|417399538|gb|JAA46770.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1 [Desmodus
rotundus]
Length = 354
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 11/156 (7%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+ K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 96 EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K+N ++ + A T VK KI+V + D +EK+R +F F
Sbjct: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGF 205
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GE+E+ + D T K RGF +K E +K +E
Sbjct: 206 GEVESIELPMD-KTNKRRGFCFITFKEEEPVKKIME 240
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E AA + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>gi|312377573|gb|EFR24379.1| hypothetical protein AND_11086 [Anopheles darlingi]
Length = 405
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 6/211 (2%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+TT E+L F GE+ +C ++ + TG+++GF F+ F +
Sbjct: 8 DHEKGKLFVGGLSWETTHENLQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPENVD 67
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
+AL+N ++ R + P P + + G K+++ +P ++ + LR FF
Sbjct: 68 RALENGPHTLDGRTIDPK-----PCNPRSQHKPKRTGGYPKVFLGGLPPNITETDLRSFF 122
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
R+G + I +D KSRGF ++ +A + G Q++ +KA
Sbjct: 123 CRYGNVMEVVIMYDQEKKKSRGFGFLSFENEVAVERATTDHFVHISGKQVEVKKAEPRDG 182
Query: 283 RTSSNSSSSNNQAQMMIQKQQQPMLQGQQQG 313
+SN+S S + Q Q PM GQ G
Sbjct: 183 NQNSNNSMSTDSYQWG-SPQAPPMGNGQMGG 212
>gi|160333913|ref|NP_001103930.1| heterogeneous nuclear ribonucleoprotein D0 [Danio rerio]
gi|141796298|gb|AAI39675.1| Hnrnpd protein [Danio rerio]
Length = 314
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+FV GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 44 IDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFK 103
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 104 EAESVEKVITQKEHKLNGKVIDPKKAKAMKTKEPVK----------KIFVGGLSPDTPEE 153
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F+ +GE+E+ + + T K RGF +K E +K +E
Sbjct: 154 KIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIME 198
>gi|9588102|dbj|BAB03468.1| RNA binding protein p37 AUF1 [Rattus norvegicus]
Length = 285
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 66 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFK 125
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 126 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 175
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 176 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
>gi|417409283|gb|JAA51156.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 279
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 11/157 (7%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+ K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 21 EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 80
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K+N ++ + A T VK KI+V + D +EK+R +F F
Sbjct: 81 DQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGF 130
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
GE+E+ + D T K RGF +K E +K +E+
Sbjct: 131 GEVESIELPMD-KTNKRRGFCFITFKEEEPVKKIMEK 166
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E AA + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 7 SSPRHSEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 66
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 67 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 97
>gi|127138754|ref|NP_001076010.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Rattus
norvegicus]
gi|149046820|gb|EDL99594.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_d [Rattus
norvegicus]
Length = 285
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 66 IDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFK 125
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + + K+N ++ + A T VK KI+V + D +E
Sbjct: 126 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEE 175
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 176 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
>gi|422296095|gb|EKU23394.1| RNA-binding protein Musashi, partial [Nannochloropsis gaditana
CCMP526]
Length = 240
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV G+ W TT+E L S FG GE+ + L+ DK TG +GF F+ F T AA++A +
Sbjct: 46 KIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFAT-PAAMEAAVS 104
Query: 168 PQRKVNNRMASCQ------------LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
++ R + A G TG G + Q Q +K++V + DV +
Sbjct: 105 EAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQ---FQDIKKVFVGGLSPDVTE 161
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
E R +F++FGEI + D TTG+SRGF Y +K L + M EG + +
Sbjct: 162 EAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQQHDM-EGRPMDVK 220
Query: 276 KA 277
+A
Sbjct: 221 RA 222
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL D T+E+ + F GEI + +++D+ TG+++GF F+ + +AA+K +
Sbjct: 148 KKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTY-AEEAAMKKVL 206
Query: 167 NPQRKVNNRMASCQLA 182
+ Q + R + A
Sbjct: 207 SQQHDMEGRPMDVKRA 222
>gi|432901707|ref|XP_004076907.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Oryzias latipes]
Length = 279
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF F++FK + K L+
Sbjct: 57 KMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDSNTGRSRGFGFVLFKDSSSVDKVLEQ 116
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A +K++ RKI+V + + +E +R +F FGE
Sbjct: 117 KEHRLDGRQIDPKRAMA------MKKEAV-----RKIFVGGLNPEATEEAIREYFGAFGE 165
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
IET + D + K RGF YK +K LE+ EG + + + +A+G
Sbjct: 166 IETIELPIDPKSKKRRGFIFITYKDEASVKKCLEKKYHTIEGGRCERRSSAQG 218
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RKIFV GL + T+E++ FG GEIE +L ID + K +GF FI +K + K L+
Sbjct: 140 RKIFVGGLNPEATEEAIREYFGAFGEIETIELPIDPKSKKRRGFIFITYKDEASVKKCLE 199
>gi|149046822|gb|EDL99596.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_f [Rattus
norvegicus]
gi|149046823|gb|EDL99597.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_f [Rattus
norvegicus]
Length = 257
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 10/154 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE+
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGEV 110
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
E+ + D T K RGF +K E +K +E+
Sbjct: 111 ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 143
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 144 KKYHNVG--LSKCEI 156
>gi|351709446|gb|EHB12365.1| Heterogeneous nuclear ribonucleoprotein D0 [Heterocephalus glaber]
Length = 271
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 13/169 (7%)
Query: 97 LETADRDVSQR---KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
++T + +QR K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F+
Sbjct: 94 MKTTQKATAQREEWKMFMGGLSWDTTKKDLKDCFSKFGEVVDCTLKLDPITGRSRGFGFV 153
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ K ++ K + + K+N ++ + A T VK KI+V + D
Sbjct: 154 LLKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDT 203
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+E +R +F FGE+E+ + D T K RGF +K E +K +E+
Sbjct: 204 PEENIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 252
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E++ FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 192 KKIFVGGLSPDTPEENIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 251
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 252 KKYHNVG--LSKCEI 264
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 194 QGAAAQGER-KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKT 252
Q A AQ E K+++ + D K+ L+ F +FGE+ + D TG+SRGF + K
Sbjct: 98 QKATAQREEWKMFMGGLSWDTTKKDLKDCFSKFGEVVDCTLKLDPITGRSRGFGFVLLKE 157
Query: 253 VEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
E K +++ + G + ++A K +
Sbjct: 158 SESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 188
>gi|443725988|gb|ELU13330.1| hypothetical protein CAPTEDRAFT_219071 [Capitella teleta]
Length = 453
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV GL WDTT ++L F GE+ +C ++ + TGK++GF F+ FK L N
Sbjct: 9 KIFVGGLSWDTTHATMLKYFSRYGEVIDCVVMKNPQTGKSRGFGFVTFKDPSCVKTVLAN 68
Query: 168 PQRKVNNRMAS---CQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
+++R C S+ K +A +RK+++ +P ++ +++++ F
Sbjct: 69 QPHVLDSRQIDPKQCNPRSMN------KGGKSAENSKRKVFMGGLPSNITEDEIKEHFAE 122
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FGE++ I D +SRGF + E K + + +G Q++C++A
Sbjct: 123 FGEVQDVVIMVDQDKERSRGFGFLTFDCEESVEKVISQHYVPVKGKQVECKRA 175
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 42/78 (53%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
S+RK+F+ GL + T++ + F GE+++ +++D+ +++GF F+ F ++ K
Sbjct: 98 SKRKVFMGGLPSNITEDEIKEHFAEFGEVQDVVIMVDQDKERSRGFGFLTFDCEESVEKV 157
Query: 165 LKNPQRKVNNRMASCQLA 182
+ V + C+ A
Sbjct: 158 ISQHYVPVKGKQVECKRA 175
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V + D + +F R+GE+ + + TGKSRGF +K + L
Sbjct: 9 KIFVGGLSWDTTHATMLKYFSRYGEVIDCVVMKNPQTGKSRGFGFVTFKDPSCVKTVLAN 68
Query: 263 PQKMFEGHQL---QCQKAAEGKNRTSSNSS 289
+ + Q+ QC + K S+ +S
Sbjct: 69 QPHVLDSRQIDPKQCNPRSMNKGGKSAENS 98
>gi|328779568|ref|XP_393451.4| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Apis
mellifera]
Length = 442
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 107/211 (50%), Gaps = 8/211 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++T D + K+FV GL W+TTQE+L FG GE+ +C ++ + +G+++GF F+ F
Sbjct: 3 VKTEMDDDEKGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFS 62
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
L+N +++ R + P P +++ + G K+++ +P +V +
Sbjct: 63 DPANVPLVLQNGPHQLDGRTIDPK-----PCNPRTQQKPKRSGGFPKVFLGGLPSNVTET 117
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
LR FF RFG++ I +D KSRGF ++ + + + E G Q++ ++
Sbjct: 118 DLRSFFTRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVAEHFVNLNGKQVEIKR 177
Query: 277 AAEGKNRTSSNSSSSNNQAQMMIQKQQQPML 307
A + R SS+ + ++Q Q +Q P +
Sbjct: 178 A---EPRDSSSKMNDSHQGQWGPPQQGGPPM 205
>gi|113931574|ref|NP_001039236.1| heterogeneous nuclear ribonucleoprotein A/B [Xenopus (Silurana)
tropicalis]
gi|89272441|emb|CAJ82657.1| heterogeneous nuclear ribonucleoprotein A/B [Xenopus (Silurana)
tropicalis]
Length = 313
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L+
Sbjct: 53 KMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEQ 112
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + ++K+R +FE FGE
Sbjct: 113 KEHRLDGRLIDPKKAMAMKKDP-----------IKKIFVGGLNPEAGEDKIREYFETFGE 161
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T K RGF +K E +K LE
Sbjct: 162 IEAIELPMDPKTNKRRGFVFITFKEEEPVKKILE 195
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 193 EQGAAAQGER---KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFV 249
+Q A++GE K++V + D K+ L+ +F +FGE+ I D TG+SRGF +
Sbjct: 40 DQINASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFIL 99
Query: 250 YKTVEGARKALEEPQKMFEGHQLQCQKA 277
+K K LE+ + +G + +KA
Sbjct: 100 FKDAASVDKVLEQKEHRLDGRLIDPKKA 127
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + ++ + F GEIE +L +D T K +GF FI FK + K L
Sbjct: 136 KKIFVGGLNPEAGEDKIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKIL- 194
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 195 --EKKFHNVSGSKCEIKIAQP 213
>gi|340723465|ref|XP_003400110.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Bombus
terrestris]
Length = 443
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 107/211 (50%), Gaps = 8/211 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++T D + K+FV GL W+TTQE+L FG GE+ +C ++ + +G+++GF F+ F
Sbjct: 3 VKTEMDDDEKGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFS 62
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
L+N +++ R + P P +++ + G K+++ +P +V +
Sbjct: 63 DPANVPLVLQNGPHQLDGRTIDPK-----PCNPRTQQKPKRSGGFPKVFLGGLPSNVTET 117
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
LR FF RFG++ I +D KSRGF ++ + + + E G Q++ ++
Sbjct: 118 DLRSFFTRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVAEHFVNLNGKQVEIKR 177
Query: 277 AAEGKNRTSSNSSSSNNQAQMMIQKQQQPML 307
A + R SS+ + ++Q Q +Q P +
Sbjct: 178 A---EPRDSSSKMNDSHQGQWGPPQQGGPPM 205
>gi|148227150|ref|NP_001088992.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Xenopus laevis]
gi|52082714|gb|AAU25946.1| p37 AUF1 [Xenopus laevis]
Length = 295
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 10/154 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK + K ++
Sbjct: 39 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESEGVDKVMEQ 98
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T VK KI+V + D ++K+R +F FGE
Sbjct: 99 KEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEDKIREYFGTFGE 148
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
+E + D T K RGF +K + + +E
Sbjct: 149 VEAIELPMDNKTNKRRGFCFITFKEEDPVKNIME 182
>gi|414591910|tpg|DAA42481.1| TPA: hypothetical protein ZEAMMB73_522608 [Zea mays]
Length = 449
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 27/195 (13%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+E AD K+FV G+ W+T+++ L FG GE+ E ++ D+ TG+A+GF F+VF
Sbjct: 1 MEAAD----HGKLFVGGISWETSEDRLREYFGRFGEVTEAVIMRDRSTGRARGFGFVVFA 56
Query: 157 TRKAA--------------VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGER 202
A V+A K R ++ + +S+G GPG R
Sbjct: 57 DAAVAERVTTEKHMIDGRMVEAKKAVPRDDHSIVTKSNASSIGSPGPGRT---------R 107
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V +P +V + R +FE+FG I + +D T + RGF Y + + KAL +
Sbjct: 108 KIFVGGLPSNVTEADFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHK 167
Query: 263 PQKMFEGHQLQCQKA 277
G ++ ++A
Sbjct: 168 SFHELNGKMVEVKRA 182
>gi|432884676|ref|XP_004074535.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like [Oryzias
latipes]
Length = 314
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+FV GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 46 IDASKNEEDEGKMFVGGLSWDTTKKDLKDYFAKFGEVVDCTLKLDPMTGRSRGFGFVLFK 105
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + K+N ++ + A + VK K++V + D +E
Sbjct: 106 DAESVEKVASQKEHKLNGKVIDPKKAKAMKSKEPVK----------KVFVGGLSPDTPEE 155
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + + T K RGF +K E +K +E
Sbjct: 156 KVREYFGAFGEVESIELPMENKTNKRRGFCFITFKEEEAVKKVME 200
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL DT +E + FG GE+E +L ++ T K +GF FI FK +A K ++
Sbjct: 141 KKVFVGGLSPDTPEEKVREYFGAFGEVESIELPMENKTNKRRGFCFITFKEEEAVKKVME 200
Query: 167 NPQRKVNNRMASCQL 181
+ ++ C++
Sbjct: 201 KKYHNIG--LSKCEV 213
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
+ E K++V + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K
Sbjct: 53 EDEGKMFVGGLSWDTTKKDLKDYFAKFGEVVDCTLKLDPMTGRSRGFGFVLFKDAESVEK 112
Query: 259 ALEEPQKMFEGHQLQCQKA 277
+ + G + +KA
Sbjct: 113 VASQKEHKLNGKVIDPKKA 131
>gi|189441636|gb|AAI67421.1| LOC734098 protein [Xenopus (Silurana) tropicalis]
Length = 254
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L+
Sbjct: 53 KMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEQ 112
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + ++K+R +FE FGE
Sbjct: 113 KEHRLDGRLIDPKKAMAMKKDPI-----------KKIFVGGLNPEAGEDKIREYFETFGE 161
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
IE + D T K RGF +K E +K LE + + ++L
Sbjct: 162 IEAIELPMDPKTNKRRGFVFITFKEEEPVKKILEISMDLLQLYRL 206
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 193 EQGAAAQGER---KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFV 249
+Q A++GE K++V + D K+ L+ +F +FGE+ I D TG+SRGF +
Sbjct: 40 DQINASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFIL 99
Query: 250 YKTVEGARKALEEPQKMFEGHQLQCQKA 277
+K K LE+ + +G + +KA
Sbjct: 100 FKDAASVDKVLEQKEHRLDGRLIDPKKA 127
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + ++ + F GEIE +L +D T K +GF FI FK + K L+
Sbjct: 136 KKIFVGGLNPEAGEDKIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKILE 195
>gi|350406107|ref|XP_003487656.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Bombus
impatiens]
Length = 426
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 107/211 (50%), Gaps = 8/211 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++T D + K+FV GL W+TTQE+L FG GE+ +C ++ + +G+++GF F+ F
Sbjct: 3 VKTEMDDDEKGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFS 62
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
L+N +++ R + P P +++ + G K+++ +P +V +
Sbjct: 63 DPANVPLVLQNGPHQLDGRTIDPK-----PCNPRTQQKPKRSGGFPKVFLGGLPSNVTET 117
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
LR FF RFG++ I +D KSRGF ++ + + + E G Q++ ++
Sbjct: 118 DLRSFFTRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVAEHFVNLNGKQVEIKR 177
Query: 277 AAEGKNRTSSNSSSSNNQAQMMIQKQQQPML 307
A + R SS+ + ++Q Q +Q P +
Sbjct: 178 A---EPRDSSSKMNDSHQGQWGPPQQGGPPM 205
>gi|242047760|ref|XP_002461626.1| hypothetical protein SORBIDRAFT_02g005670 [Sorghum bicolor]
gi|241925003|gb|EER98147.1| hypothetical protein SORBIDRAFT_02g005670 [Sorghum bicolor]
Length = 453
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 23/184 (12%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA------ 161
K+FV G+ W+T+++ L FG GE+ E ++ D+ TG+A+GF F+VF A
Sbjct: 12 KLFVGGISWETSEDRLRDYFGRFGEVTEAVIMRDRSTGRARGFGFVVFADPAVAERVTMD 71
Query: 162 --------VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
V+A K R ++ ++ +S+G GPG RKI+V +P +V
Sbjct: 72 KHMIDGRMVEAKKAVPRDDHSIVSKSNASSIGSPGPGRT---------RKIFVGGLPSNV 122
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
+ R +FE+FG I + +D T + RGF Y + + KAL + G ++
Sbjct: 123 TEADFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKSFHELNGKMVE 182
Query: 274 CQKA 277
++A
Sbjct: 183 VKRA 186
>gi|222623190|gb|EEE57322.1| hypothetical protein OsJ_07420 [Oryza sativa Japonica Group]
Length = 338
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 11/95 (11%)
Query: 183 SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKS 242
S+GPT P +RK++V NVP ++LR F RFGEIE GP+G D TG+
Sbjct: 135 SLGPTSP-----------DRKLFVDNVPARAAHDELRRLFSRFGEIEAGPLGADRATGQF 183
Query: 243 RGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
RG+AIF YK EG KALEE + +F+G +L C++A
Sbjct: 184 RGYAIFFYKYPEGLTKALEERKVVFDGCELHCRRA 218
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 41/140 (29%)
Query: 72 PYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTT------------ 119
P+++++L+DL+ A + P L + TA+ D + R++FVHGL T
Sbjct: 69 PFTRNELLDLLVEACLRNPALRSRLAATAESDAAHRRLFVHGLSPGVTAAANGRRLRPLR 128
Query: 120 ---------------------------QESLLSAFGGSGEIEECKLVIDKVTGKAKGFAF 152
+ L F GEIE L D+ TG+ +G+A
Sbjct: 129 RARRLASLGPTSPDRKLFVDNVPARAAHDELRRLFSRFGEIEAGPLGADRATGQFRGYAI 188
Query: 153 IVFKTRKAAVKALKNPQRKV 172
+K + KAL+ +RKV
Sbjct: 189 FFYKYPEGLTKALE--ERKV 206
>gi|380017405|ref|XP_003692647.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Apis
florea]
Length = 439
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 107/211 (50%), Gaps = 8/211 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++T D + K+FV GL W+TTQE+L FG GE+ +C ++ + +G+++GF F+ F
Sbjct: 3 VKTEMDDDEKGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFS 62
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
L+N +++ R + P P +++ + G K+++ +P +V +
Sbjct: 63 DPANVPLVLQNGPHQLDGRTIDPK-----PCNPRTQQKPKRSGGFPKVFLGGLPSNVTET 117
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
LR FF RFG++ I +D KSRGF ++ + + + E G Q++ ++
Sbjct: 118 DLRSFFTRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVAEHFVNLNGKQVEIKR 177
Query: 277 AAEGKNRTSSNSSSSNNQAQMMIQKQQQPML 307
A + R SS+ + ++Q Q +Q P +
Sbjct: 178 A---EPRDSSSKMNDSHQGQWGPPQQGGPPM 205
>gi|242043256|ref|XP_002459499.1| hypothetical protein SORBIDRAFT_02g005620 [Sorghum bicolor]
gi|241922876|gb|EER96020.1| hypothetical protein SORBIDRAFT_02g005620 [Sorghum bicolor]
Length = 455
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 23/184 (12%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA------ 161
K+FV G+ W+T+++ L FG GE+ E ++ D+ TG+A+GF F+VF A
Sbjct: 14 KLFVGGISWETSEDRLRDYFGRFGEVTEAVIMRDRSTGRARGFGFVVFADPAVAERVTMD 73
Query: 162 --------VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
V+A K R ++ ++ +S+G GPG RKI+V +P +V
Sbjct: 74 KHMIDGRMVEAKKAVPRDDHSIVSKSNASSIGSPGPGRT---------RKIFVGGLPSNV 124
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
+ R +FE+FG I + +D T + RGF Y + + KAL + G ++
Sbjct: 125 TEADFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKSFHELNGKMVE 184
Query: 274 CQKA 277
++A
Sbjct: 185 VKRA 188
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RKIFV GL + T+ F G I + ++ D T + +GF FI + + A KAL
Sbjct: 113 RKIFVGGLPSNVTEADFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALH 172
Query: 167 NPQRKVNNRMASCQLA 182
++N +M + A
Sbjct: 173 KSFHELNGKMVEVKRA 188
>gi|124506883|ref|XP_001352039.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23505068|emb|CAD51850.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 388
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 113/222 (50%), Gaps = 21/222 (9%)
Query: 52 SSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDV----SQR 107
+ S + E E+E + L+ P SK+QLID++A +A L+H+ I E + V S R
Sbjct: 86 DNKSVKDDESEAEKLRRLIAPLSKEQLIDILATSA----LIHEDIREKCNEAVASSPSTR 141
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
++ V + + T E L F GEIE+ +V +K G++KG+ F+ FK ++ K LK+
Sbjct: 142 RLMVRNIPFSTRDEQFLKYFESFGEIEDGIIVREK-EGRSKGYGFVTFKYVESVQKCLKS 200
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++N+ +L + T + K++V N+ + LR FE++G+
Sbjct: 201 SH-TLDNKELQVRLVADPFTD----------HYQNKLFVRNLSQKTNVSTLRSIFEKYGK 249
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEG 269
+E I D GKS+G+ + + A K +++P+++ +
Sbjct: 250 LEECVIIHD-NEGKSKGYGFLTFSSPREAFKVMQQPERIIDN 290
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D Q K+FV L T +L S F G++EEC ++ D GK+KG+ F+ F + + A
Sbjct: 220 DHYQNKLFVRNLSQKTNVSTLRSIFEKYGKLEECVIIHDN-EGKSKGYGFLTFSSPREAF 278
Query: 163 KALKNPQRKVNNRMASCQLA 182
K ++ P+R ++NR+ A
Sbjct: 279 KVMQQPERIIDNRVVFLHFA 298
>gi|171846711|gb|AAI61598.1| LOC734098 protein [Xenopus (Silurana) tropicalis]
Length = 280
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 11/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L+
Sbjct: 20 KMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEQ 79
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + ++K+R +FE FGE
Sbjct: 80 KEHRLDGRLIDPKKAMAMKKDP-----------IKKIFVGGLNPEAGEDKIREYFETFGE 128
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
IE + D T K RGF +K E +K LE+
Sbjct: 129 IEAIELPMDPKTNKRRGFVFITFKEEEPVKKILEK 163
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + ++ + F GEIE +L +D T K +GF FI FK + K L
Sbjct: 103 KKIFVGGLNPEAGEDKIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKIL- 161
Query: 167 NPQRKVNN 174
++K +N
Sbjct: 162 --EKKFHN 167
>gi|240849376|ref|NP_001155365.1| Vg1 mRNA binding protein 40 [Xenopus laevis]
gi|49257602|gb|AAH74212.1| Unknown (protein for MGC:83385) [Xenopus laevis]
gi|157415960|gb|ABV54637.1| Vg1 mRNA binding protein 40 [Xenopus laevis]
Length = 326
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L++
Sbjct: 66 KMFVGGLSWDTSKKDLKDYFEKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEH 125
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + ++K+R +FE FGE
Sbjct: 126 KEHRLDGRLIDPKKAMAMKKEP-----------IKKIFVGGLNPEAGEDKIREYFETFGE 174
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T K RGF +K E +K LE
Sbjct: 175 IEAVELPMDPKTNKRRGFVFITFKEEEPVKKILE 208
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + D K+ L+ +FE+FGE+ I D TG+SRGF ++K K LE
Sbjct: 66 KMFVGGLSWDTSKKDLKDYFEKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEH 125
Query: 263 PQKMFEGHQLQCQKA 277
+ +G + +KA
Sbjct: 126 KEHRLDGRLIDPKKA 140
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + ++ + F GEIE +L +D T K +GF FI FK + K L
Sbjct: 149 KKIFVGGLNPEAGEDKIREYFETFGEIEAVELPMDPKTNKRRGFVFITFKEEEPVKKIL- 207
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 208 --EKKFHNVSGSKCEIKIAQP 226
>gi|417410217|gb|JAA51585.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 379
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 11/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 172 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 231
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE
Sbjct: 232 KEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGE 281
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+E+ + D T K RGF +K E +K +E+
Sbjct: 282 VESIELPMD-KTNKRRGFCFITFKEEEPVKKIMEK 315
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E AA + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 156 SSPRHSEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 215
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 216 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 246
>gi|391328905|ref|XP_003738923.1| PREDICTED: RNA-binding protein squid-like [Metaseiulus
occidentalis]
Length = 299
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
T+ D RK+F GL +DTT L S F GEI+EC + +D +T K++GF FI F ++
Sbjct: 37 TSTADAEDRKLFCGGLSFDTTDADLRSHFEKYGEIQECTVKMDPMTKKSRGFGFITFGSK 96
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
+A A+ + + + A P G +K++ +P + +E++
Sbjct: 97 QAVEDAIAGAPHTIKGKQIDPKAAKARP-------------GAKKVFCGGLPPETTEEEI 143
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
R +F ++G IE + D + RGF Y+T A A+++P++ G + +KA
Sbjct: 144 RTYFGQYGNIEALELPVDKEKNQRRGFIFVTYETTAAADAAVKKPKQTINGKECDVKKA 202
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+F GL +TT+E + + FG G IE +L +DK + +GF F+ ++T AA A+K
Sbjct: 127 KKVFCGGLPPETTEEEIRTYFGQYGNIEALELPVDKEKNQRRGFIFVTYETTAAADAAVK 186
Query: 167 NPQRKVNNRMASCQLASVGP 186
P++ +N + C + P
Sbjct: 187 KPKQTINGK--ECDVKKATP 204
>gi|148224084|ref|NP_001080489.1| heterogeneous nuclear ribonucleoprotein A/B [Xenopus laevis]
gi|27694771|gb|AAH43814.1| Hnrpab-prov protein [Xenopus laevis]
Length = 324
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK ++ K L++
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + ++++R +FE FGE
Sbjct: 125 KEHRLDGRLIDPKKAMAMKKDPI-----------KKIFVGGLNPEAGEDQIREYFETFGE 173
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T K RGF +K + +K LE
Sbjct: 174 IEAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + D K+ L+ +F +FGE+ I D TG+SRGF ++K E K LE
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 263 PQKMFEGHQLQCQKA 277
+ +G + +KA
Sbjct: 125 KEHRLDGRLIDPKKA 139
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + ++ + F GEIE +L +D T K +GF FI FK K L
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKIL- 206
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 207 --EKKFHNVSGSKCEIKIAQP 225
>gi|66911597|gb|AAH97855.1| LOC496375 protein [Xenopus laevis]
Length = 286
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 10/155 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK + K ++
Sbjct: 30 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESEGVDKVMEQ 89
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T VK KI+V + D ++K+R +F FGE
Sbjct: 90 KEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEDKIREYFGTFGE 139
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+E + D T K RGF +K + + +E+
Sbjct: 140 VEAIELPMDNKTNKRRGFCFITFKEEDPVKNIMEK 174
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 190 GVK-EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIF 248
GVK + + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 16 GVKIDASKTEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 75
Query: 249 VYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K EG K +E+ + G + ++A
Sbjct: 76 LFKESEGVDKVMEQKEHKLNGKVIDPKRA 104
>gi|47214361|emb|CAG01206.1| unnamed protein product [Tetraodon nigroviridis]
Length = 256
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 99/204 (48%), Gaps = 28/204 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F G++ +C + +D+ TG+++GF FI+FK + K L+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFNKFGDVTDCTIKMDQGTGRSRGFGFILFKDPASVEKVLEQ 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ R+ + A P +K++V + D KE ++ +FE FGE
Sbjct: 61 KEHKLDGRVIDPKRALAMKKEP-----------VKKVFVGGLNPDTSKEVIQEYFEEFGE 109
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE----------------EPQKMFEGHQ 271
IE + D T K RGF YK +KALE +P+++++ Q
Sbjct: 110 IENIELPQDPKTEKRRGFVFITYKEEACVKKALENKFHTVGGSKCEIKIAQPKEVYQQQQ 169
Query: 272 LQCQKAAEGKNRTSSNSSSSNNQA 295
++ G+NRT + NQ
Sbjct: 170 Y-GNRSYGGRNRTRGGQGQNWNQG 192
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL DT++E + F GEIE +L D T K +GF FI +K KAL+
Sbjct: 84 KKVFVGGLNPDTSKEVIQEYFEEFGEIENIELPQDPKTEKRRGFVFITYKEEACVKKALE 143
Query: 167 NPQRKVNNRMASCQLA 182
N V ++A
Sbjct: 144 NKFHTVGGSKCEIKIA 159
>gi|383857431|ref|XP_003704208.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like
[Megachile rotundata]
Length = 443
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 107/211 (50%), Gaps = 8/211 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++T D + K+FV GL W+TTQE+L FG GE+ +C ++ + +G+++GF F+ F
Sbjct: 3 VKTEMDDDEKGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFS 62
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
L+N +++ R + P P +++ + G K+++ +P +V +
Sbjct: 63 DPANVPLVLQNGPHQLDGRTIDPK-----PCNPRTQQKPKRSGGFPKVFLGGLPSNVTET 117
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
LR FF R+G++ I +D KSRGF ++ + + + E G Q++ ++
Sbjct: 118 DLRTFFNRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVAEHFVNLNGKQVEIKR 177
Query: 277 AAEGKNRTSSNSSSSNNQAQMMIQKQQQPML 307
A + R SS+ + ++Q Q +Q P +
Sbjct: 178 A---EPRDSSSKMNDSHQGQWGPPQQGGPPM 205
>gi|345489599|ref|XP_003426177.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
2 [Nasonia vitripennis]
Length = 445
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 8/204 (3%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+TTQE+L F GE+ +C ++ + +G+++GF F+ F
Sbjct: 9 DDEKGKLFVGGLSWETTQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFSDPSNVG 68
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
L+N +++ R + P P ++ + G K+++ +P +V + LR FF
Sbjct: 69 LVLQNGPHQLDGRTIDPK-----PCNPRTLQKPKRSGGFPKVFLGGLPSNVTETDLRSFF 123
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
+RFG++ I +D KSRGF ++ + + + E G Q++ ++A +
Sbjct: 124 QRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVGEHFVNLNGKQVEIKRA---EP 180
Query: 283 RTSSNSSSSNNQAQMMIQKQQQPM 306
R SS+ + +Q Q +Q PM
Sbjct: 181 RDSSSKVNDTHQGQWGPPQQGPPM 204
>gi|345311474|ref|XP_001513207.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Ornithorhynchus anatinus]
Length = 480
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 11/156 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 212 RKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKEAASVDKVLD 271
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ +++ R+ + A P +KI+V + + ++K+R +F FG
Sbjct: 272 QKEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEDKIRDYFGEFG 320
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
EIE + D T K RGF +K E +K LE+
Sbjct: 321 EIEAIELPMDPKTNKRRGFVFITFKEEEPVKKILEK 356
>gi|149046824|gb|EDL99598.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_g [Rattus
norvegicus]
Length = 208
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 10/154 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE+
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGEV 110
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
E+ + D T K RGF +K E +K +E+
Sbjct: 111 ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FGG GE+E +L +D T K +GF FI FK + K ++
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 143
Query: 167 NPQRKVNNRMASCQL 181
V ++ C++
Sbjct: 144 KKYHNVG--LSKCEI 156
>gi|327265526|ref|XP_003217559.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like [Anolis
carolinensis]
Length = 367
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L+
Sbjct: 113 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEAASVDKVLEQ 172
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 173 KEHKLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEAAEEKIREYFGEFGE 221
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T K RGF +K + +K LE
Sbjct: 222 IEAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 255
>gi|410913984|ref|XP_003970468.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Takifugu rubripes]
Length = 319
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D+ TG+++GF FI+FK + K L+
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFNKFGEVTDCTIKMDQGTGRSRGFGFILFKDPASVEKVLEQ 124
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ R+ + A P +K++V + D KE + +FE FGE
Sbjct: 125 KEHKLDGRVIDPKRALAMKKEP-----------VKKVFVGGLNPDTSKEVIHEYFEAFGE 173
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T K RGF YK +KALE
Sbjct: 174 IENIELPQDPKTEKRRGFVFITYKEEACVKKALE 207
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + D K+ L+ +F +FGE+ I D TG+SRGF ++K K LE+
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFNKFGEVTDCTIKMDQGTGRSRGFGFILFKDPASVEKVLEQ 124
Query: 263 PQKMFEGHQLQCQKA 277
+ +G + ++A
Sbjct: 125 KEHKLDGRVIDPKRA 139
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL DT++E + F GEIE +L D T K +GF FI +K KAL+
Sbjct: 148 KKVFVGGLNPDTSKEVIHEYFEAFGEIENIELPQDPKTEKRRGFVFITYKEEACVKKALE 207
Query: 167 NPQRKVNNRMASCQLA 182
N V ++A
Sbjct: 208 NKFHTVGGSKCEIKIA 223
>gi|345489601|ref|XP_001600266.2| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
1 [Nasonia vitripennis]
Length = 376
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 8/204 (3%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+TTQE+L F GE+ +C ++ + +G+++GF F+ F
Sbjct: 9 DDEKGKLFVGGLSWETTQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFSDPSNVG 68
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
L+N +++ R + P P ++ + G K+++ +P +V + LR FF
Sbjct: 69 LVLQNGPHQLDGRTIDPK-----PCNPRTLQKPKRSGGFPKVFLGGLPSNVTETDLRSFF 123
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
+RFG++ I +D KSRGF ++ + + + E G Q++ ++A +
Sbjct: 124 QRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEDAVDRCVGEHFVNLNGKQVEIKRA---EP 180
Query: 283 RTSSNSSSSNNQAQMMIQKQQQPM 306
R SS+ + +Q Q +Q PM
Sbjct: 181 RDSSSKVNDTHQGQWGPPQQGPPM 204
>gi|312373340|gb|EFR21099.1| hypothetical protein AND_17568 [Anopheles darlingi]
Length = 808
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 16/181 (8%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
E RD RK+FV GL W+TT + L FG G+IE + D VTG+++GFAFIV+K
Sbjct: 45 ENNARD-DDRKLFVGGLSWETTDKELKEHFGTYGDIESINVKTDPVTGRSRGFAFIVYKQ 103
Query: 158 RKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEK 217
++ K + +NN+ V P ++ A G KI+V + ++ ++
Sbjct: 104 AESIDKVVAAGDHIINNK-------KVDP------KKAKARHG--KIFVGGLTTEISDDE 148
Query: 218 LRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ FF +FG I + FD + +GF Y +V+ + L+ P++ G ++ +KA
Sbjct: 149 IKTFFGQFGTIVEVEMPFDKQKNQRKGFCFITYDSVQVVNELLKTPKQTICGKEVDVKKA 208
Query: 278 A 278
Sbjct: 209 T 209
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
Y + + ID + AA DHI+ D KIFV GL + + + + + F
Sbjct: 101 YKQAESIDKVVAAG-------DHIINNKKVDPKKAKARHGKIFVGGLTTEISDDEIKTFF 153
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G G I E ++ DK + KGF FI + + + + LK P++ + + + A+ P
Sbjct: 154 GQFGTIVEVEMPFDKQKNQRKGFCFITYDSVQVVNELLKTPKQTICGKEVDVKKATPKP 212
>gi|417410064|gb|JAA51513.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 360
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 11/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 153 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 212
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE
Sbjct: 213 KEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGE 262
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+E+ + D T K RGF +K E +K +E+
Sbjct: 263 VESIELPMD-KTNKRRGFCFITFKEEEPVKKIMEK 296
>gi|344265339|ref|XP_003404742.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein A/B-like [Loxodonta africana]
Length = 332
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D + K RGF YK E +K LE
Sbjct: 180 IEAIELPMDPKSNKRRGFVFITYKEEEPVKKVLE 213
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D + K +GF FI +K + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITYKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 214 KKFHTVSG--SKCEIKVAQP 231
>gi|19111886|ref|NP_595094.1| mRNA cleavage factor complex subunit (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74676196|sp|O94432.1|YHKF_SCHPO RecName: Full=Uncharacterized RNA-binding protein C660.15
gi|4049514|emb|CAA22535.1| mRNA cleavage factor complex subunit (predicted)
[Schizosaccharomyces pombe]
Length = 474
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 11/185 (5%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
D+ ET+ + K+F+ GL W+TT +SL F GE+ +C ++ D TG+++GF F+
Sbjct: 150 DNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFL 209
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
FK K V + + + ++ ++ + A P +++ A K++V VP D
Sbjct: 210 TFKNPK-CVNEVMSKEHHLDGKIIDPKRAI-----PREEQEKTA-----KMFVGGVPGDC 258
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
+E+ R FF +FG + + D TG+ RGF Y+ + +P G ++
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVE 318
Query: 274 CQKAA 278
++A
Sbjct: 319 VKRAT 323
>gi|17554332|ref|NP_497799.1| Protein MSI-1 [Caenorhabditis elegans]
gi|10047307|dbj|BAB13470.1| neural RNA-binding protein MSI-1 [Caenorhabditis elegans]
gi|18376536|emb|CAA84667.2| Protein MSI-1 [Caenorhabditis elegans]
Length = 320
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TT E+L FG GE+ EC ++ D T +A+GF FI F + K L N
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ + ++A T Q +K+++ + E ++ +FE +G+
Sbjct: 106 REHELDGKKIDPKVAFPKRT------QAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGK 159
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD T + RGF + + E A K E G ++C+KA
Sbjct: 160 VEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKA 209
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+F+ GL +T E + F G++E+ L+ DK T + +GF F+ F + + A K +
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCE 193
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIY 205
++N +M C+ A V+ + A R +Y
Sbjct: 194 IHFHEINGKMVECKKAQPKEVMLPVQLNKSRAAAARNLY 232
>gi|281353447|gb|EFB29031.1| hypothetical protein PANDA_013362 [Ailuropoda melanoleuca]
Length = 316
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 11/156 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 54 RKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 113
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ +++ R+ + A P +KI+V + + +EK+R +F FG
Sbjct: 114 QKEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFG 162
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
EIE + D + K RGF +K E +K LE+
Sbjct: 163 EIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 198
>gi|405977312|gb|EKC41770.1| Heterogeneous nuclear ribonucleoprotein 27C [Crassostrea gigas]
Length = 569
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 12/217 (5%)
Query: 78 LIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
+I A +TK P + + ++K+F+ GL WDT Q+SLL+ F GE+ +C
Sbjct: 12 VITFSMALSTKAPSKSKLVRYPVTKTGKKKKLFIGGLSWDTDQDSLLNFFSQYGEVIDCV 71
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAA 197
++ ++ TGK++GF F+ F + L ++ R + + G K+ G
Sbjct: 72 VMKNQQTGKSRGFGFVTFNDAQCVDTVLSAAPHTIDGRQVDAKPCNPKAANKGPKDGGGR 131
Query: 198 AQG-----------ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
G ++KI++ +P +V+++ LR FF ++G++ I D KSRGF
Sbjct: 132 IHGGGGGGGGGGDKDKKIFMGGLP-NVDEDFLRNFFGKYGKVLDVNIMIDQQNKKSRGFG 190
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
+++ + + E G Q++C++A R
Sbjct: 191 FLTFESEDAVDQVCAEHFININGKQVECKRAEPRDGR 227
>gi|348535413|ref|XP_003455195.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Oreochromis niloticus]
Length = 316
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++ + + + K+FV GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 46 IDASKNEEDEGKMFVGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPMTGRSRGFGFVLFK 105
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
++ K + K+N ++ + A + VK KI+V + D +E
Sbjct: 106 EPESVDKVASQKEHKLNGKVIDPKKAKAMKSKEPVK----------KIFVGGLSPDTPEE 155
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
K+R +F FGE+E+ + + T K RGF +K E +K +E
Sbjct: 156 KVREYFGAFGEVESVELPMENKTNKRRGFCFITFKEEEPVKKIME 200
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FG GE+E +L ++ T K +GF FI FK + K ++
Sbjct: 141 KKIFVGGLSPDTPEEKVREYFGAFGEVESVELPMENKTNKRRGFCFITFKEEEPVKKIME 200
Query: 167 NPQRKVNNRMASCQL 181
+ ++ C++
Sbjct: 201 KKYHNIG--LSKCEI 213
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
+ E K++V + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K
Sbjct: 53 EDEGKMFVGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPMTGRSRGFGFVLFKEPESVDK 112
Query: 259 ALEEPQKMFEGHQLQCQKA 277
+ + G + +KA
Sbjct: 113 VASQKEHKLNGKVIDPKKA 131
>gi|291387921|ref|XP_002710458.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Oryctolagus
cuniculus]
Length = 306
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 11/184 (5%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
D E+A+ + K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI
Sbjct: 31 DLQWESAENEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFI 90
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+FK + K L + +++ R+ + A P +KI+V + +
Sbjct: 91 LFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEA 139
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
+EK+R +F FGEIE + D + K RGF +K + +K LE+ G + +
Sbjct: 140 TEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEDPVKKVLEKKFHTISGSKCE 199
Query: 274 CQKA 277
+ A
Sbjct: 200 IKVA 203
>gi|82753560|ref|XP_727727.1| UBP1 interacting protein 2a [Plasmodium yoelii yoelii 17XNL]
gi|23483711|gb|EAA19292.1| UBP1 interacting protein 2a [Plasmodium yoelii yoelii]
Length = 344
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 123/265 (46%), Gaps = 35/265 (13%)
Query: 5 NKVKKLKQATTSQKPNKKILKKEPKSLKKPEPPPVAAAAAAATSSSCSSSSESESEPESE 64
N+ +++ TSQ N IL+ + + KK + + E E E
Sbjct: 17 NQYEQISNLNTSQDNNDNILEDQDLNDKKIK----------------------DEESEIE 54
Query: 65 SISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLL 124
+ L+ P SK+QLID++A AA+ + D E S R++ V + + T E L
Sbjct: 55 QLRRLIAPLSKEQLIDILATAASIHEDIRDRCNEAVTSSPSTRRLMVRNIPFSTKDEQFL 114
Query: 125 SAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASV 184
F GEIE+ +V +K G++KG+ F+ FK ++ K LK ++N+ +L +
Sbjct: 115 KYFETFGEIEDGIIVREK-EGRSKGYGFVTFKYIESVQKCLKTTH-TLDNKDLQVRLVAD 172
Query: 185 GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRG 244
T + K++V N+ + LR FE++G++E I D GKS+G
Sbjct: 173 PFTD----------HYQNKLFVRNLSQKTNVTTLRNIFEKYGKLEECVIIHD-NEGKSKG 221
Query: 245 FAIFVYKTVEGARKALEEPQKMFEG 269
+ + + + A K +++P+++ +
Sbjct: 222 YGFLTFSSPKEAFKVMQQPERIIDN 246
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D Q K+FV L T +L + F G++EEC ++ D GK+KG+ F+ F + K A
Sbjct: 176 DHYQNKLFVRNLSQKTNVTTLRNIFEKYGKLEECVIIHDN-EGKSKGYGFLTFSSPKEAF 234
Query: 163 KALKNPQRKVNNRMASCQLA 182
K ++ P+R ++NR+ A
Sbjct: 235 KVMQQPERIIDNRVVFLHFA 254
>gi|508268|gb|AAA64653.1| A+U-rich RNA-binding protein, partial [Mus musculus]
Length = 177
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 10/140 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 47 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 106
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K+N ++ + A T VK KI+V + D +EK+R +F FGE
Sbjct: 107 KEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGFGE 156
Query: 228 IETGPIGFDITTGKSRGFAI 247
+E+ + D T K RGF I
Sbjct: 157 VESIELPMDNKTNKRRGFCI 176
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
+ E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF ++K E K
Sbjct: 43 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 102
Query: 259 ALEEPQKMFEGHQLQCQKAAEGKNR 283
+++ + G + ++A K +
Sbjct: 103 VMDQKEHKLNGKVIDPKRAKAMKTK 127
>gi|443691822|gb|ELT93572.1| hypothetical protein CAPTEDRAFT_180669 [Capitella teleta]
Length = 243
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TT E L F GEI EC ++ D +T +++GF F+ F + K L N
Sbjct: 25 KMFIGGLSWQTTPEGLREYFAKYGEISECMVMRDPITKRSRGFGFVTFSDPASVDKVLAN 84
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++++++ ++A P P Q +KI+V + + ++ +FE+FG+
Sbjct: 85 GPHELDSKVIDPKVAF--PRRPNTANQPKLVTKTKKIFVGGLSASTTVDDVKQYFEQFGK 142
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD T + RGFA ++ + K E ++C+KA
Sbjct: 143 IEDAMLMFDKATQRHRGFAFVTFENEDVVDKVCEIHFHEINNKMVECKKA 192
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT + + F G+IE+ L+ DK T + +GFAF+ F+ K +
Sbjct: 117 KKIFVGGLSASTTVDDVKQYFEQFGKIEDAMLMFDKATQRHRGFAFVTFENEDVVDKVCE 176
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 177 IHFHEINNKMVECKKA 192
>gi|385303294|gb|EIF47378.1| subunit of cleavage factor i, partial [Dekkera bruxellensis
AWRI1499]
Length = 298
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 11/169 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W+T +ESL FG GE+ E ++ D TG+++GFAF+ FK K+ + LK
Sbjct: 1 MFIGGLTWETDEESLGKYFGQFGEVTELHIMRDTATGRSRGFAFLTFKDSKSVDEVLKQ- 59
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ ++ ++ + A +EQ KI+V + DV ++ +F++FG+I
Sbjct: 60 KHVLDGKLIDPKRAIP------REEQDKTG----KIFVGGIAPDVTHQEFTDYFKQFGDI 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ D TGKSRG+ Y + + + MF G Q++ +KA
Sbjct: 110 IDSQLMLDKDTGKSRGYGFVTYDSADAVARVTRNKYVMFHGRQMEIKKA 158
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV G+ D T + F G+I + +L++DK TGK++G+ F+ + + A + +N
Sbjct: 84 KIFVGGIAPDVTHQEFTDYFKQFGDIIDSQLMLDKDTGKSRGYGFVTYDSADAVARVTRN 143
>gi|209155336|gb|ACI33900.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 348
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D+ TG+++GF FI+FK K L+
Sbjct: 85 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKEAAGVDKVLEQ 144
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A P +KI+V + D EKE ++ +F FGE
Sbjct: 145 KEHRLDGRQIDPKKAMAMKKEP-----------VKKIFVGGLNPDTEKEVIQEYFGTFGE 193
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IET + D T K RGF YK +K LE
Sbjct: 194 IETIELPQDPKTEKRRGFVFITYKDETPVKKVLE 227
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 197 AAQGER---KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTV 253
A++GE K++V + D K+ L+ +F +FGE+ I D TG+SRGF ++K
Sbjct: 76 ASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKEA 135
Query: 254 EGARKALEEPQKMFEGHQLQCQKA 277
G K LE+ + +G Q+ +KA
Sbjct: 136 AGVDKVLEQKEHRLDGRQIDPKKA 159
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FG GEIE +L D T K +GF FI +K K L
Sbjct: 168 KKIFVGGLNPDTEKEVIQEYFGTFGEIETIELPQDPKTEKRRGFVFITYKDETPVKKVL- 226
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 227 --EKKFHNVSGSKCEIKIAQP 245
>gi|1362732|pir||S56750 single stranded D box binding factor 2 - chicken
Length = 353
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L+
Sbjct: 91 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 150
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 151 KEHRLDGRLIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 199
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T K RGF +K + +K LE
Sbjct: 200 IEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 233
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D T K +GF FI FK K L
Sbjct: 174 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVL- 232
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 233 --EKKFHNVSGSKCEIKVAQP 251
>gi|45384514|ref|NP_990659.1| heterogeneous nuclear ribonucleoprotein A/B [Gallus gallus]
gi|515838|emb|CAA56586.1| single stranded D box binding factor [Gallus gallus]
Length = 302
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L+
Sbjct: 91 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 150
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 151 KEHRLDGRLIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 199
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T K RGF +K + +K LE
Sbjct: 200 IEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 233
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D T K +GF FI FK K L
Sbjct: 174 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVL- 232
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 233 --EKKFHNVSGSKCEIKVAQP 251
>gi|392465146|dbj|BAM24697.1| musashi homolog 1 [Sus scrofa]
Length = 362
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L + D K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F
Sbjct: 10 LASPDSPYDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +FE+FG+++ + FD TT + RGF +++ + K E ++C+K
Sbjct: 124 DVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
>gi|154799954|dbj|BAF75022.1| Musashi-1a [Cynops pyrrhogaster]
Length = 361
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 143/315 (45%), Gaps = 26/315 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQYGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 81 SRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
++ + FD TT + RGF ++ + K E ++C+KA S
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFEVEDIVEKVCEIHFHEINNKMVECKKAQ--PKEVMSP 192
Query: 288 SSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGGF 347
+SS+ ++++M ML G Q AA A+++ A G PG + F
Sbjct: 193 TSSARGRSRVMPYGMDAFMLGIGMLGYPGFQ----AATYASRSYA--GLAPGYTYQFPEF 246
Query: 348 LVNPGLINPMVAGAL--HQGAIPASNVGAMAGSSVLGSFGPG---AAQGLQQQQHVYPNA 402
V P+ +G + AIP + G MA ++ G G A Q QQ Q P
Sbjct: 247 RVERA---PLTSGPILPELTAIPLTAYGPMAAAAAAVVRGNGSFLAGQTEQQWQRTGP-- 301
Query: 403 PQSKSQGTGGGSFPG 417
+++ G G S PG
Sbjct: 302 --TRAGGFLGTSSPG 314
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEVEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 169 IHFHEINNKMVECKKA 184
>gi|189241702|ref|XP_966757.2| PREDICTED: similar to hrp48.1 [Tribolium castaneum]
Length = 400
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 7/184 (3%)
Query: 96 ILETADRDV--SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
I++ RD+ ++ K+FV GL W+TTQ++L F GE+ +C ++ + +G+++GF F+
Sbjct: 2 IIQLGFRDLFNNETKLFVGGLSWETTQDNLQRFFSRYGEVIDCVVMKNAESGRSRGFGFV 61
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
F L+N ++ R + P P ++ G K+++ +P +V
Sbjct: 62 TFSDPANVNTVLQNGPHTLDGRTIDPK-----PCNPRTLQKPKKGGGYPKVFLGGLPSNV 116
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
+ LR FF RFG++ I +D KSRGF ++ E + + E G Q++
Sbjct: 117 TETDLRTFFTRFGKVMEVVIMYDQEKKKSRGFGFLSFEDEESVDRCVSEHFVNLNGKQVE 176
Query: 274 CQKA 277
+KA
Sbjct: 177 IKKA 180
>gi|414883901|tpg|DAA59915.1| TPA: hypothetical protein ZEAMMB73_814821 [Zea mays]
Length = 448
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 29/196 (14%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+E AD K+FV G+ W+T+++ L FG GE+ E ++ D+ TG+A+GF F+VF
Sbjct: 1 MEAADYG----KLFVGGISWETSEDRLREYFGRFGEVTEAVIMRDRSTGRARGFGFVVFA 56
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLA---------------SVGPTGPGVKEQGAAAQGE 201
A + + + ++ RM + A S G GPG
Sbjct: 57 DAAVAERVTMD-KHTIDGRMVEAKKAVPRDDHSIVSKSNGSSTGSPGPGRT--------- 106
Query: 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RKI+V +P V + R +FE+FG I + +D T + RGF Y + + KAL
Sbjct: 107 RKIFVGGLPSSVTEADFRRYFEQFGIITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALH 166
Query: 262 EPQKMFEGHQLQCQKA 277
+ G ++ ++A
Sbjct: 167 KSFHELNGKMVEVKRA 182
>gi|154799956|dbj|BAF75023.1| Musashi-1b [Cynops pyrrhogaster]
Length = 346
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 8/191 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQYGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 81 SRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
++ + FD TT + RGF ++ + K E ++C+KA S
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFEVEDIVEKVCEIHFHEINNKMVECKKAQ--PKEVMSP 192
Query: 288 SSSSNNQAQMM 298
+SS+ ++++M
Sbjct: 193 TSSARGRSRVM 203
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEVEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 169 IHFHEINNKMVECKKA 184
>gi|70935654|ref|XP_738883.1| RNA-binding protein [Plasmodium chabaudi chabaudi]
gi|56515450|emb|CAH75094.1| RNA-binding protein, putative [Plasmodium chabaudi chabaudi]
Length = 321
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 106/212 (50%), Gaps = 13/212 (6%)
Query: 58 ESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWD 117
+ E E E + L+ P SK+QLID++A AA+ + D E S R++ V + +
Sbjct: 53 DEESEVEQLRRLIAPLSKEQLIDILATAASIHEDIRDKCNEAVTSSPSTRRLMVRNIPFS 112
Query: 118 TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177
T E L F GEIE+ +V +K G++KG+ F+ FK ++ K LK ++N+
Sbjct: 113 TKDEQFLKYFETFGEIEDGIIVREK-EGRSKGYGFVTFKYIESVQKCLK-SNHTLDNKDL 170
Query: 178 SCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDI 237
+L + T + K++V N+ + LR FE++G++E I D
Sbjct: 171 QVRLVADPFTD----------HYQNKLFVRNLSQKTNVTTLRNIFEKYGKLEECVIIHD- 219
Query: 238 TTGKSRGFAIFVYKTVEGARKALEEPQKMFEG 269
GKS+G+ + + + A K +++P+++ +
Sbjct: 220 NEGKSKGYGFLTFSSPKEAFKVMQQPERIIDN 251
>gi|6678940|ref|NP_032655.1| RNA-binding protein Musashi homolog 1 [Mus musculus]
gi|51316207|sp|Q61474.1|MSI1H_MOUSE RecName: Full=RNA-binding protein Musashi homolog 1;
Short=Musashi-1
gi|1434857|dbj|BAA08530.1| RNA-binding protein [Mus musculus]
gi|147897761|gb|AAI40423.1| Musashi homolog 1(Drosophila) [synthetic construct]
gi|148921876|gb|AAI46539.1| Musashi homolog 1(Drosophila) [synthetic construct]
Length = 362
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L + D K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +FE+FG+++ + FD TT + RGF +++ + K E ++C+K
Sbjct: 124 DVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>gi|397615588|gb|EJK63524.1| hypothetical protein THAOC_15808 [Thalassiosira oceanica]
Length = 316
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 97/201 (48%), Gaps = 21/201 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV GL W TT+E+L F GE++ +++ D+ TG +GFAF+VFK + L+N
Sbjct: 22 KIFVGGLSWQTTEETLRYHFEQYGEVQSVEVMRDRNTGDPRGFAFVVFKADETVDLILRN 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQ---------------GER--KIYVSNVP 210
++N+++ + A P G A ER K++V +P
Sbjct: 82 KPHEINHKVVDVKRAQARGVAPPSIHGGNAGDPIVKHEENGNKHLTPEERMNKVFVGGLP 141
Query: 211 RDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVE-GARKALE-EPQKMFE 268
V++ L+ FF FG + + D+ +SRGF Y GA+KALE +P MF
Sbjct: 142 MHVDQAGLKDFFSVFGPVVDSIVMMDLVNNRSRGFGFVTYADGSGGAQKALEAQPIDMF- 200
Query: 269 GHQLQCQKAA-EGKNRTSSNS 288
G ++ + A G N S N+
Sbjct: 201 GKMVEVKLATPRGGNNNSGNA 221
>gi|356576454|ref|XP_003556346.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Glycine max]
Length = 476
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 11/186 (5%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D Q K+F+ G+ WDTT++ L FG G++ ++ +K TGK +GF F+VF
Sbjct: 2 DSDQGKLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPNILD 61
Query: 163 KALKNPQ----RKVNNRMA---SCQLASV----GPTGPGVKEQGAAAQGERKIYVSNVPR 211
+ L++ R V+ + A Q SV G + G+ + +KI+V +P
Sbjct: 62 RVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSENGGNIRTKKIFVGGLPP 121
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
+ +EK R +FE +G + + +D TG+ RGF + T E + L + G Q
Sbjct: 122 TLTEEKFRLYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQ 181
Query: 272 LQCQKA 277
++ ++A
Sbjct: 182 VEVKRA 187
>gi|162951821|ref|NP_001106165.1| heterogeneous nuclear ribonucleoprotein A/B [Sus scrofa]
gi|160858224|dbj|BAF93845.1| CArG-binding factor A [Sus scrofa]
Length = 302
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 87 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 146
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 147 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 195
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D + K RGF +K E +K LE
Sbjct: 196 IEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 229
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D + K +GF FI FK + K L+
Sbjct: 170 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 229
>gi|154799958|dbj|BAF75024.1| Musashi-1c [Cynops pyrrhogaster]
Length = 342
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 8/191 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQYGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 81 SRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
++ + FD TT + RGF ++ + K E ++C+KA S
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFEVEDIVEKVCEIHFHEINNKMVECKKAQ--PKEVMSP 192
Query: 288 SSSSNNQAQMM 298
+SS+ ++++M
Sbjct: 193 TSSARGRSRVM 203
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEVEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 169 IHFHEINNKMVECKKA 184
>gi|154799960|dbj|BAF75025.1| Musashi-1d [Cynops pyrrhogaster]
Length = 327
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 97/191 (50%), Gaps = 8/191 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQYGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A P + Q +KI+V + + E ++ +FE+FG+
Sbjct: 81 SRHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
++ + FD TT + RGF ++ + K E ++C+KA S
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFEVEDIVEKVCEIHFHEINNKMVECKKAQ--PKEVMSP 192
Query: 288 SSSSNNQAQMM 298
+SS+ ++++M
Sbjct: 193 TSSARGRSRVM 203
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEVEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 169 IHFHEINNKMVECKKA 184
>gi|432878673|ref|XP_004073373.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Oryzias latipes]
Length = 330
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 15/156 (9%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D+ TG+++GF FI+FK + K L+
Sbjct: 73 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKDAASVDKVLEQ 132
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE--RKIYVSNVPRDVEKEKLRGFFERF 225
+ +++ R + A A + E +KI+V + D+ KE++ +F F
Sbjct: 133 KEHRLDGRQIDPKRA-------------MAMKKEIVKKIFVGGLKPDLSKEEIEEYFGAF 179
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIET + D T K RGF YK +K LE
Sbjct: 180 GEIETIELPQDPKTEKRRGFVFITYKEEPSVKKVLE 215
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL D ++E + FG GEIE +L D T K +GF FI +K + K L+
Sbjct: 156 KKIFVGGLKPDLSKEEIEEYFGAFGEIETIELPQDPKTEKRRGFVFITYKEEPSVKKVLE 215
Query: 167 NPQRKVNNRMASCQLA 182
V ++A
Sbjct: 216 KKYHTVGGSKCEIKIA 231
>gi|22507308|ref|NP_683688.1| RNA-binding protein Musashi homolog 1 [Rattus norvegicus]
gi|51316134|sp|Q8K3P4.1|MSI1H_RAT RecName: Full=RNA-binding protein Musashi homolog 1;
Short=Musashi-1
gi|22073952|gb|AAK94485.1| RNA-binding protein Musashi-1 [Rattus norvegicus]
Length = 362
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L + D K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +FE+FG+++ + FD TT + RGF +++ + K E ++C+K
Sbjct: 124 DVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>gi|94966849|ref|NP_001035612.1| heterogeneous nuclear ribonucleoprotein A/B [Bos taurus]
gi|73587357|gb|AAI02924.1| Heterogeneous nuclear ribonucleoprotein A/B [Bos taurus]
gi|296485515|tpg|DAA27630.1| TPA: heterogeneous nuclear ribonucleoprotein A/B [Bos taurus]
Length = 285
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDPV-----------KKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D + K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D + K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
++ + C++ P
Sbjct: 214 KKFHTISG--SKCEIKVAQP 231
>gi|345777448|ref|XP_003431598.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Canis lupus
familiaris]
Length = 353
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 11/156 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 120 RKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 179
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ +++ R+ + A P +KI+V + + +EK+R +F FG
Sbjct: 180 QKEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFG 228
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
EIE + D + K RGF +K E +K LE+
Sbjct: 229 EIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 264
>gi|426229395|ref|XP_004008776.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 2
[Ovis aries]
Length = 332
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D + K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D + K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
++ + C++ P
Sbjct: 214 KKFHTISG--SKCEIKVAQP 231
>gi|410948034|ref|XP_003980746.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Felis
catus]
Length = 300
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 39 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 98
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 99 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 147
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
IE + D T K RGF +K E +K LE+
Sbjct: 148 IEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEK 182
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D T K +GF FI FK + K L+
Sbjct: 122 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 181
>gi|4505255|ref|NP_002433.1| RNA-binding protein Musashi homolog 1 [Homo sapiens]
gi|125630689|ref|NP_001074996.1| RNA-binding protein Musashi homolog 1 [Bos taurus]
gi|296213096|ref|XP_002753122.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Callithrix
jacchus]
gi|51316193|sp|O43347.1|MSI1H_HUMAN RecName: Full=RNA-binding protein Musashi homolog 1;
Short=Musashi-1
gi|2769698|gb|AAB95636.1| similar to murine RNA-binding protein; 99% similar to D49654
(PID:g1434857) [Homo sapiens]
gi|3786320|dbj|BAA33962.1| Musashi [Homo sapiens]
gi|119618592|gb|EAW98186.1| musashi homolog 1 (Drosophila), isoform CRA_b [Homo sapiens]
gi|124358513|dbj|BAF45938.1| RNA-binding protein Musashi-1 [Bos taurus]
gi|147897997|gb|AAI40381.1| Musashi homolog 1 (Drosophila) [synthetic construct]
gi|148921740|gb|AAI46464.1| Musashi homolog 1 (Drosophila) [synthetic construct]
gi|208966796|dbj|BAG73412.1| musashi homolog 1 [synthetic construct]
Length = 362
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L + D K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +FE+FG+++ + FD TT + RGF +++ + K E ++C+K
Sbjct: 124 DVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>gi|348516192|ref|XP_003445623.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Oreochromis
niloticus]
Length = 329
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L TAD K+F+ GL W TTQE L F GE++EC ++ D VT +++GF F+ F
Sbjct: 10 LSTADSPHDPCKMFIGGLSWQTTQEGLKEYFCKYGEVKECMVMRDPVTKRSRGFGFVTFV 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQTRHELDSKTIDPKVAFP------RRAQPKLVTRTKKIFVGGLSVNTTIE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +F++FG+++ + FD TT + RGF ++ + K E ++C+K
Sbjct: 124 DVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
>gi|426229393|ref|XP_004008775.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 1
[Ovis aries]
Length = 285
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D + K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D + K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
++ + C++ P
Sbjct: 214 KKFHTISG--SKCEIKVAQP 231
>gi|296478518|tpg|DAA20633.1| TPA: musashi 1 [Bos taurus]
Length = 342
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L + D K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +FE+FG+++ + FD TT + RGF +++ + K E ++C+K
Sbjct: 124 DVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>gi|324511674|gb|ADY44854.1| RNA-binding protein Musashi Rbp6 [Ascaris suum]
Length = 345
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TT E L FG GE+ EC ++ D T +A+GF FI F + K L +
Sbjct: 45 KMFIGGLSWQTTAEGLRDYFGKFGEVNECMVMRDPATKRARGFGFITFADPASVEKVLAH 104
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
Q +++ + ++A P + + +K+++ + E +R +FE++G+
Sbjct: 105 DQHELDGKKIDPKVAFPKRAQPKMIIK------TKKVFIGGLSATSTLEDMRNYFEQYGK 158
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF + + + K E G ++C+KA
Sbjct: 159 VEDAMLMFDKTTQRHRGFGFITFDNDDVSDKVCEIHFHEINGKMVECKKA 208
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
+ +K+F+ GL +T E + + F G++E+ L+ DK T + +GF FI F + K
Sbjct: 130 IKTKKVFIGGLSATSTLEDMRNYFEQYGKVEDAMLMFDKTTQRHRGFGFITFDNDDVSDK 189
Query: 164 ALKNPQRKVNNRMASCQLA 182
+ ++N +M C+ A
Sbjct: 190 VCEIHFHEINGKMVECKKA 208
>gi|443897375|dbj|GAC74716.1| nuclear porin [Pseudozyma antarctica T-34]
Length = 694
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 28/207 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
K+FV GL WDTT++SL F GE+ C ++ D TG+++GFAF+ F KA +
Sbjct: 267 KMFVGGLNWDTTEDSLRRYFSQFGEVGHCTVMRDANTGRSRGFAFLNFVDPKAVNTVMVR 326
Query: 167 ---------NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEK 217
+P+R + S G Q AA Q K++V +P V E
Sbjct: 327 EHYLDGKVIDPKRAIPRPQQSHHGLGGG----FGAGQPAANQ---KLFVGGLPASVTPES 379
Query: 218 LRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
R FFE+FG + D TG+ RGF Y + L MF+G ++ ++A
Sbjct: 380 FRTFFEQFGTLSECTCMMDRETGRPRGFGFLTYADDASLERILSANPIMFDGKEVDVKRA 439
Query: 278 AEGKNRTSSNSSSSNNQAQMMIQKQQQ 304
S N+ + +++QQ+
Sbjct: 440 -----------QSKNDPQSLQLRRQQR 455
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
+ +K+FV GL T ES + F G + EC ++D+ TG+ +GF F+ +
Sbjct: 361 AANQKLFVGGLPASVTPESFRTFFEQFGTLSECTCMMDRETGRPRGFGFLTY 412
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
E K++V + D ++ LR +F +FGE+ + D TG+SRGFA +
Sbjct: 265 EGKMFVGGLNWDTTEDSLRRYFSQFGEVGHCTVMRDANTGRSRGFAFLNF 314
>gi|68069479|ref|XP_676651.1| RNA-binding protein [Plasmodium berghei strain ANKA]
gi|56496444|emb|CAH98134.1| RNA-binding protein, putative [Plasmodium berghei]
Length = 348
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 106/212 (50%), Gaps = 13/212 (6%)
Query: 58 ESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWD 117
+ E E E + L+ P SK+QLID++A AA+ + D + S R++ V + +
Sbjct: 52 DEESEVEQLRRLIAPLSKEQLIDILATAASIHEDIRDRCNDAVTSSPSTRRLMVRNIPFS 111
Query: 118 TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177
T E L F GEIE+ +V +K G++KG+ F+ FK ++ K LK ++N+
Sbjct: 112 TKDEQFLKYFETFGEIEDGIIVREK-EGRSKGYGFVTFKYIESVQKCLKGSH-TLDNKDL 169
Query: 178 SCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDI 237
+L + T + K++V N+ + LR FE++G++E I D
Sbjct: 170 QVRLVADPFTD----------HYQNKLFVRNLSQKTNVTTLRNIFEKYGKLEECVIIHD- 218
Query: 238 TTGKSRGFAIFVYKTVEGARKALEEPQKMFEG 269
GKS+G+ + + + A K +++P+++ +
Sbjct: 219 NEGKSKGYGFLTFSSPKEAFKVMQQPERIIDN 250
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D Q K+FV L T +L + F G++EEC ++ D GK+KG+ F+ F + K A
Sbjct: 180 DHYQNKLFVRNLSQKTNVTTLRNIFEKYGKLEECVIIHDN-EGKSKGYGFLTFSSPKEAF 238
Query: 163 KALKNPQRKVNNRMASCQLA 182
K ++ P+R ++NR+ A
Sbjct: 239 KVMQQPERIIDNRVVFLHFA 258
>gi|449267179|gb|EMC78145.1| Heterogeneous nuclear ribonucleoprotein A/B, partial [Columba
livia]
Length = 263
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 11/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 109
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
IE + D T K RGF +K + +K LE+
Sbjct: 110 IEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK 144
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D T K +GF FI FK K L
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVL- 142
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 143 --EKKFHNVSGSKCEIKVAQP 161
>gi|119618593|gb|EAW98187.1| musashi homolog 1 (Drosophila), isoform CRA_c [Homo sapiens]
Length = 343
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L + D K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +FE+FG+++ + FD TT + RGF +++ + K E ++C+K
Sbjct: 124 DVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>gi|452822947|gb|EME29962.1| heterogeneous nuclear ribonucleoprotein A1/A3 [Galdieria
sulphuraria]
Length = 368
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 4/170 (2%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV GL W+TT+E+L F G + +C ++ DK TG +GF F+ F+ ++A +A
Sbjct: 51 KIFVGGLSWETTEETLQKYFESYGRVLDCVIMRDKHTGHPRGFGFVTFEKEESADRAA-T 109
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A P + + + RKI+V +P +E +FER G
Sbjct: 110 KRHELDGRQVEAKKAV--PKAEYIT-RSQVTKPTRKIFVGGLPLSCTEEDFMEYFERLGH 166
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ I +D TG SRGF + + + K E+ Q +G ++ +KA
Sbjct: 167 VVEAHIMYDHQTGISRGFGFVTFSSEDMVEKVFEQSQHEIKGKIVEVKKA 216
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RKIFV GL T+E + F G + E ++ D TG ++GF F+ F + K +
Sbjct: 141 RKIFVGGLPLSCTEEDFMEYFERLGHVVEAHIMYDHQTGISRGFGFVTFSSEDMVEKVFE 200
Query: 167 NPQRKVNNRMASCQLA 182
Q ++ ++ + A
Sbjct: 201 QSQHEIKGKIVEVKKA 216
>gi|29124621|gb|AAH48898.1| Heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
Length = 340
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK K L
Sbjct: 70 KMFVGGLSWDTSKKDLKDCFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 129
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A P +KI+V + + +E++R +F FGE
Sbjct: 130 KEHRLDGRQIDPKKAMAMKKEP-----------VKKIFVGGLNPETTEERIREYFGAFGE 178
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IET + D + K RGF +K E +K LE
Sbjct: 179 IETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 212
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT+E + FG GEIE +L +D + K +GF FI FK +A K L+
Sbjct: 153 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 212
Query: 167 NPQRKV 172
V
Sbjct: 213 KKYHNV 218
>gi|334310867|ref|XP_001381121.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Monodelphis domestica]
Length = 376
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 98 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKESASVDKVLDQ 157
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + ++K+R +F FGE
Sbjct: 158 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEDKIREYFGDFGE 206
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE+ + D T K RGF +K + +K LE
Sbjct: 207 IESIELPMDPKTNKRRGFVFITFKEEDPVKKILE 240
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T++ + FG GEIE +L +D T K +GF FI FK K L
Sbjct: 181 KKIFVGGLNPEATEDKIREYFGDFGEIESIELPMDPKTNKRRGFVFITFKEEDPVKKIL- 239
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 240 --EKKFHNVGGSKCEIKVAQP 258
>gi|108744009|gb|ABG02277.1| heterogeneous nuclear ribonucleoprotein A/B [Haplochromis burtoni]
Length = 316
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 11/170 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF F++FK + K L+
Sbjct: 57 KMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDSNTGRSRGFGFVLFKDSASVDKVLEQ 116
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A P +KI+V + + +E +R +F FGE
Sbjct: 117 KEHRLDGRNIDPKRAMAMKKDP-----------VKKIFVGGLNPEATEETIREYFGAFGE 165
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IET + D + K RGF YK +K LE+ +G + + + A
Sbjct: 166 IETIELPIDPKSKKRRGFIFITYKEETSVKKCLEKKYHNIQGGRCELKIA 215
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E++ FG GEIE +L ID + K +GF FI +K + K L
Sbjct: 140 KKIFVGGLNPEATEETIREYFGAFGEIETIELPIDPKSKKRRGFIFITYKEETSVKKCL- 198
Query: 167 NPQRKVNN-RMASCQLASVGP 186
++K +N + C+L P
Sbjct: 199 --EKKYHNIQGGRCELKIAQP 217
>gi|119572425|gb|EAW52040.1| heterogeneous nuclear ribonucleoprotein A1-like, isoform CRA_a
[Homo sapiens]
Length = 309
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 TTPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + +GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASA 189
Query: 287 NSS 289
+SS
Sbjct: 190 SSS 192
>gi|119618591|gb|EAW98185.1| musashi homolog 1 (Drosophila), isoform CRA_a [Homo sapiens]
Length = 351
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L + D K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +FE+FG+++ + FD TT + RGF +++ + K E ++C+K
Sbjct: 124 DVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>gi|410343157|gb|JAA40525.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 285
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKAP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 214 KKFHTVSG--SKCEIKVAQP 231
>gi|403281821|ref|XP_003932373.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Saimiri
boliviensis boliviensis]
Length = 352
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 SRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 136 VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 185
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 110 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 169
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMSPTG 195
>gi|223647556|gb|ACN10536.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 344
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D+ TG+++GF FI+FK + K L+
Sbjct: 82 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKEAVSVDKVLEQ 141
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A P +KI+V + D +KE ++ +F FGE
Sbjct: 142 KEHRLDGRQIDPKKAMAMKKEP-----------VKKIFVGGLNPDTDKEVIQEYFGTFGE 190
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IET + D T K RGF YK +K LE
Sbjct: 191 IETIELPQDPKTEKRRGFVFITYKDETPVKKVLE 224
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 197 AAQGER---KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTV 253
A++GE K++V + D K+ L+ +F +FGE+ I D TG+SRGF ++K
Sbjct: 73 ASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKEA 132
Query: 254 EGARKALEEPQKMFEGHQLQCQKA 277
K LE+ + +G Q+ +KA
Sbjct: 133 VSVDKVLEQKEHRLDGRQIDPKKA 156
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT +E + FG GEIE +L D T K +GF FI +K K L
Sbjct: 165 KKIFVGGLNPDTDKEVIQEYFGTFGEIETIELPQDPKTEKRRGFVFITYKDETPVKKVL- 223
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 224 --EKKFHNVSGSKCEIKIAQP 242
>gi|348551765|ref|XP_003461700.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like [Cavia
porcellus]
Length = 327
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGDFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGDFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|213408421|ref|XP_002174981.1| DAZ-associated protein [Schizosaccharomyces japonicus yFS275]
gi|212003028|gb|EEB08688.1| DAZ-associated protein [Schizosaccharomyces japonicus yFS275]
Length = 453
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 11/171 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT ESL F GE+ +C ++ D TG+++GF F+ FK K V+ + +
Sbjct: 121 KMFIGGLNWETTDESLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKDPK-CVQVVMS 179
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ ++ ++ + A +EQ A K++V VP D +E+ R FF +FG
Sbjct: 180 KEHHLDGKIIDPKRAIP------REEQEKTA----KMFVGGVPADCTEEEFRDFFNQFGR 229
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+ + D TG+ RGF ++ + +P G ++ ++A
Sbjct: 230 VLDATLMMDKDTGRPRGFGFVTFENEAAVENTMSQPYITIHGKPVEVKRAT 280
>gi|380786855|gb|AFE65303.1| heterogeneous nuclear ribonucleoprotein A/B isoform b [Macaca
mulatta]
gi|383409141|gb|AFH27784.1| heterogeneous nuclear ribonucleoprotein A/B isoform b [Macaca
mulatta]
gi|384940568|gb|AFI33889.1| heterogeneous nuclear ribonucleoprotein A/B isoform b [Macaca
mulatta]
Length = 285
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
++ + C++ P
Sbjct: 214 KKFHTISG--SKCEIKVAQP 231
>gi|3377279|dbj|BAA32032.1| AlF-C1 [Rattus norvegicus]
Length = 331
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F +FGE
Sbjct: 135 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGQFGE 183
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K + +K LE
Sbjct: 184 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 158 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 167 NPQRKVNNRMASCQLA 182
V+ ++A
Sbjct: 218 KKFHTVSGSKCEIKVA 233
>gi|354472673|ref|XP_003498562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Cricetulus griseus]
Length = 243
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 4 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 63
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F +FGE
Sbjct: 64 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGQFGE 112
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
IE + D K RGF YK + +K LE+
Sbjct: 113 IEAIELPIDPKLNKRRGFVFITYKEEDPVKKVLEK 147
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI +K K L+
Sbjct: 87 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITYKEEDPVKKVLE 146
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 147 KKFHTVSG--SKCEIKVAQP 164
>gi|410343159|gb|JAA40526.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 332
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKAP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 214 KKFHTVSG--SKCEIKVAQP 231
>gi|348531962|ref|XP_003453476.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Oreochromis niloticus]
Length = 315
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 11/170 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT++ L F GE+ +C + +D TG+++GF F++FK + K L+
Sbjct: 57 KVFVGGLSWDTSKTDLKDYFSKFGEVSDCTIKMDSNTGRSRGFGFVLFKDSASVDKVLEQ 116
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A P +KI+V + + +E +R +F FGE
Sbjct: 117 KEHRLDGRNIDPKRAMAMKKDP-----------VKKIFVGGLNPEATEETIREYFGAFGE 165
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IET + D + K RGF YK +K LE+ +G + + + A
Sbjct: 166 IETIELPIDPKSKKRRGFIFITYKEETSVKKCLEKKYHNIQGGRCELKIA 215
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E++ FG GEIE +L ID + K +GF FI +K + K L
Sbjct: 140 KKIFVGGLNPEATEETIREYFGAFGEIETIELPIDPKSKKRRGFIFITYKEETSVKKCL- 198
Query: 167 NPQRKVNN-RMASCQLASVGP 186
++K +N + C+L P
Sbjct: 199 --EKKYHNIQGGRCELKIAQP 217
>gi|332019507|gb|EGI59986.1| Heterogeneous nuclear ribonucleoprotein 27C [Acromyrmex echinatior]
Length = 340
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 5/170 (2%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L FG GE+ +C ++ + +G+++GF F+ F L+N
Sbjct: 1 KLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKNSESGRSRGFGFVTFSDPANVSLVLQN 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ R + P P ++ + G K+++ +P +V + LR +F RFG+
Sbjct: 61 GPHQLDGRTIDPK-----PCNPRTLQKPKRSGGFPKVFLGGLPSNVTETDLRSYFTRFGK 115
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ I +D KSRGF ++ E + + E G Q++ ++A
Sbjct: 116 VMEVVIMYDQEKKKSRGFGFLSFEDEEAVDRCVAEHFVNLNGKQVEIKRA 165
>gi|55956921|ref|NP_004490.2| heterogeneous nuclear ribonucleoprotein A/B isoform b [Homo
sapiens]
gi|426351246|ref|XP_004043166.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 2
[Gorilla gorilla gorilla]
gi|12803583|gb|AAH02625.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|13528732|gb|AAH04561.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|13905354|gb|AAH01616.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|14424683|gb|AAH09359.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|119574228|gb|EAW53843.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Homo
sapiens]
gi|119574229|gb|EAW53844.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Homo
sapiens]
gi|119574230|gb|EAW53845.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Homo
sapiens]
gi|193786114|dbj|BAG51397.1| unnamed protein product [Homo sapiens]
gi|208966452|dbj|BAG73240.1| heterogeneous nuclear ribonucleoprotein A/B [synthetic construct]
Length = 285
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 214 KKFHTVSG--SKCEIKVAQP 231
>gi|410225698|gb|JAA10068.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410260868|gb|JAA18400.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410299216|gb|JAA28208.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 285
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 214 KKFHTVSG--SKCEIKVAQP 231
>gi|356535448|ref|XP_003536257.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Glycine max]
Length = 471
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 11/186 (5%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D Q K+F+ G+ WDTT++ L FG G++ ++ +K TGK +GF F+VF
Sbjct: 2 DSDQGKLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPNILD 61
Query: 163 KALKNPQ----RKVNNRMA---SCQLASV----GPTGPGVKEQGAAAQGERKIYVSNVPR 211
+ L++ R V+ + A Q SV G + G+ +KI+V +P
Sbjct: 62 RVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKKIFVGGLPP 121
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
+ +EK R +FE +G + + +D TG+ RGF + T + + L + G Q
Sbjct: 122 TLTEEKFRQYFESYGNVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKSFHDLNGKQ 181
Query: 272 LQCQKA 277
++ ++A
Sbjct: 182 VEVKRA 187
>gi|395861189|ref|XP_003802876.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Otolemur
garnettii]
Length = 332
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 11/170 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGDFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + D K RGF +K E +K LE+ G + + + A
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVA 229
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGDFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|348584450|ref|XP_003477985.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cavia
porcellus]
Length = 366
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 25 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 84
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 85 SRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 138
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 139 VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 188
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 113 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 172
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 173 IHFHEINNKMVECKKAQPKEVMSPTG 198
>gi|41056104|ref|NP_957403.1| musashi homolog 2 [Danio rerio]
gi|32822918|gb|AAH55251.1| Musashi homolog 2b (Drosophila) [Danio rerio]
Length = 408
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|414887334|tpg|DAA63348.1| TPA: hypothetical protein ZEAMMB73_769138, partial [Zea mays]
Length = 467
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 24/184 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ W+T ++ L + FG GE+ E ++ D+ TG+A+GF F+VF A + +
Sbjct: 7 KLFVGGISWETDEDRLRAYFGRFGEVTEAVIMRDRNTGRARGFGFVVFADSGIAERVTLD 66
Query: 168 PQRKVNNRM--------------ASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ ++ RM AS +S+G GPG RKI+V + +V
Sbjct: 67 -KHMIDGRMVEAKKAVPRDDQSIASKNNSSIGSPGPGRT---------RKIFVGGLASNV 116
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
+ + R +FE+FG I + +D T + RGF Y + + KAL + G ++
Sbjct: 117 TEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVE 176
Query: 274 CQKA 277
++A
Sbjct: 177 VKRA 180
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RKIFV GL + T+ F G I + ++ D T + +GF FI + + A KAL
Sbjct: 105 RKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALH 164
Query: 167 NPQRKVNNRMASCQLA 182
++N +M + A
Sbjct: 165 KNFHELNGKMVEVKRA 180
>gi|410903804|ref|XP_003965383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like isoform
1 [Takifugu rubripes]
Length = 314
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 19/205 (9%)
Query: 63 SESISSLLEPYSKDQLIDLIAAAATKIPLLHD---HILETADRDVSQRKIFVHGLGWDTT 119
++I + +E + D ++A P+ + ++ + + + K+FV GL WDTT
Sbjct: 9 DDTIMTRMEEDGEGNCDDPMSATGDCGPMGDEADGSRIDASKNEEDEGKMFVGGLSWDTT 68
Query: 120 QESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASC 179
++ L F GE+ +C L +D +TG+++GF F++FK ++ K + K+N ++
Sbjct: 69 KKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFKEPESVEKVASQKEHKLNGKVIDP 128
Query: 180 QLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFD 236
+ A A +G+ +KI+V + D +EK+R +F FGE+E+ + +
Sbjct: 129 KKAK-------------AMKGKEPVKKIFVGGLSPDTPEEKVREYFGAFGEVESIELPME 175
Query: 237 ITTGKSRGFAIFVYKTVEGARKALE 261
T K RGF +K E + +E
Sbjct: 176 TKTNKRRGFCFITFKEEEPVKCIME 200
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 181 LASVGPTGPGVKEQGAAAQGER-----------KIYVSNVPRDVEKEKLRGFFERFGEIE 229
+++ G GP G A G R K++V + D K+ L+ +F ++GE+
Sbjct: 28 MSATGDCGP----MGDEADGSRIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFCKYGEVV 83
Query: 230 TGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ D TG+SRGF ++K E K + + G + +KA
Sbjct: 84 DCTLKLDPITGRSRGFGFVLFKEPESVEKVASQKEHKLNGKVIDPKKA 131
>gi|348535473|ref|XP_003455225.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Oreochromis niloticus]
Length = 332
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D+ TG+++GF FI+FK + K L+
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKDAASVEKVLEQ 134
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A P +KI+V + D KE + +F FGE
Sbjct: 135 KEHRLDGRQIDPKKAMAMKKDP-----------VKKIFVGGLNPDTSKEVIEEYFGTFGE 183
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IET + D T K RGF YK +K +E
Sbjct: 184 IETIELPQDPKTEKRRGFVFITYKEEAPVKKVME 217
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 197 AAQGER---KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTV 253
A++GE K++V + D K+ L+ +F +FGE+ I D TG+SRGF ++K
Sbjct: 66 ASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKDA 125
Query: 254 EGARKALEEPQKMFEGHQLQCQKA 277
K LE+ + +G Q+ +KA
Sbjct: 126 ASVEKVLEQKEHRLDGRQIDPKKA 149
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL DT++E + FG GEIE +L D T K +GF FI +K K ++
Sbjct: 158 KKIFVGGLNPDTSKEVIEEYFGTFGEIETIELPQDPKTEKRRGFVFITYKEEAPVKKVME 217
Query: 167 NPQRKVNNRMASCQLA 182
V ++A
Sbjct: 218 KKYHNVGGSKCEIKIA 233
>gi|383873338|ref|NP_001244741.1| heterogeneous nuclear ribonucleoprotein A/B [Macaca mulatta]
gi|380787211|gb|AFE65481.1| heterogeneous nuclear ribonucleoprotein A/B isoform a [Macaca
mulatta]
gi|383409139|gb|AFH27783.1| heterogeneous nuclear ribonucleoprotein A/B isoform a [Macaca
mulatta]
gi|384940566|gb|AFI33888.1| heterogeneous nuclear ribonucleoprotein A/B isoform a [Macaca
mulatta]
Length = 332
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|256081434|ref|XP_002576975.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645374|emb|CCD59903.1| heterogeneous nuclear ribonucleoprotein,putative [Schistosoma
mansoni]
Length = 380
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
T + D RK+FV GL W+T + L F G++ +C + +D+ TG ++GF F+ ++
Sbjct: 43 TDENDDDSRKLFVGGLSWETNENDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESE 102
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
K L P+ + N+ + P K+ + + +KI+V + +V ++++
Sbjct: 103 DCVSKVLSVPEHWLKNK-------KIDP-----KKAKPSREPLKKIFVGGIDPEVTEDQI 150
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
R +F FG++E+ + +D GK + + + T A+KA+ + ++ G Q + A
Sbjct: 151 REYFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAAKKAISKERQDIFGRQCDVRVAV 210
>gi|402873600|ref|XP_003900659.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Papio
anubis]
Length = 311
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 11/170 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + D K RGF +K E +K LE+ G + + + A
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVA 229
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
++ + C++ P
Sbjct: 214 KKFHTISG--SKCEIKVAQP 231
>gi|410914854|ref|XP_003970902.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Takifugu rubripes]
Length = 307
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 11/181 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+E D K+FV GL WDT+++ L F GE+ +C + D +G+++GF F++FK
Sbjct: 46 IEATKGDEDTGKMFVGGLSWDTSKKDLKDYFTKFGEVSDCTIKFDSDSGRSRGFGFVLFK 105
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L+ + +++ R+ + A P VK KI+V + + +E
Sbjct: 106 DPSSVEKVLEQKEHRLDGRLIDPKRAMAMKKEP-VK----------KIFVGGLIPEATEE 154
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
+R +F +GEIE + D + K RGF YK A+K LE EG + + +
Sbjct: 155 NIREYFGEYGEIENIELPLDPKSNKRRGFIFITYKEEASAKKCLENKFHTIEGSRCELKL 214
Query: 277 A 277
A
Sbjct: 215 A 215
>gi|226494259|ref|NP_001146396.1| uncharacterized protein LOC100279976 [Zea mays]
gi|219887017|gb|ACL53883.1| unknown [Zea mays]
gi|223975747|gb|ACN32061.1| unknown [Zea mays]
Length = 470
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 24/184 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ W+T ++ L + FG GE+ E ++ D+ TG+A+GF F+VF A + +
Sbjct: 7 KLFVGGISWETDEDRLRAYFGRFGEVTEAVIMRDRNTGRARGFGFVVFADSGIAERVTLD 66
Query: 168 PQRKVNNRM--------------ASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ ++ RM AS +S+G GPG RKI+V + +V
Sbjct: 67 -KHMIDGRMVEAKKAVPRDDQSIASKNNSSIGSPGPGRT---------RKIFVGGLASNV 116
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
+ + R +FE+FG I + +D T + RGF Y + + KAL + G ++
Sbjct: 117 TEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVE 176
Query: 274 CQKA 277
++A
Sbjct: 177 VKRA 180
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RKIFV GL + T+ F G I + ++ D T + +GF FI + + A KAL
Sbjct: 105 RKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALH 164
Query: 167 NPQRKVNNRMASCQLA 182
++N +M + A
Sbjct: 165 KNFHELNGKMVEVKRA 180
>gi|410225700|gb|JAA10069.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410260870|gb|JAA18401.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410299218|gb|JAA28209.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 332
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 214 KKFHTVSG--SKCEIKVAQP 231
>gi|256081430|ref|XP_002576973.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645372|emb|CCD59901.1| heterogeneous nuclear ribonucleoprotein,putative [Schistosoma
mansoni]
Length = 381
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
T + D RK+FV GL W+T + L F G++ +C + +D+ TG ++GF F+ ++
Sbjct: 43 TDENDDDSRKLFVGGLSWETNENDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESE 102
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
K L P+ + N+ + P K+ + + +KI+V + +V ++++
Sbjct: 103 DCVSKVLSVPEHWLKNK-------KIDP-----KKAKPSREPLKKIFVGGIDPEVTEDQI 150
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
R +F FG++E+ + +D GK + + + T A+KA+ + ++ G Q + A
Sbjct: 151 REYFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAAKKAISKERQDIFGRQCDVRVAV 210
>gi|55956919|ref|NP_112556.2| heterogeneous nuclear ribonucleoprotein A/B isoform a [Homo
sapiens]
gi|426351244|ref|XP_004043165.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 1
[Gorilla gorilla gorilla]
gi|21757498|dbj|BAC05134.1| unnamed protein product [Homo sapiens]
gi|33874222|gb|AAH36708.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|119574227|gb|EAW53842.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_a [Homo
sapiens]
Length = 332
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 214 KKFHTVSG--SKCEIKVAQP 231
>gi|74225210|dbj|BAE38291.1| unnamed protein product [Mus musculus]
Length = 325
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 128
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F +FGE
Sbjct: 129 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGQFGE 177
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K + +K LE
Sbjct: 178 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 211
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 152 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 211
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 212 KKFHTVSG--SKCEIKVAQP 229
>gi|67972636|ref|NP_997752.2| heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
gi|42542905|gb|AAH66454.1| Heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
gi|67677894|gb|AAH97183.1| Heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
Length = 340
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 16/174 (9%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK K L
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 129
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A P +KI+V + + +E++R +F FGE
Sbjct: 130 KEHRLDGRQIDPKKAMAMKKEP-----------VKKIFVGGLNPETTEERIREYFGAFGE 178
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IET + D + K RGF +K E +K LE+ H + K GK
Sbjct: 179 IETIELPMDPKSNKRRGFVFITFKEEEAVKKILEKKY-----HNVSGTKDTSGK 227
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT+E + FG GEIE +L +D + K +GF FI FK +A K L+
Sbjct: 153 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 212
Query: 167 NPQRKV 172
V
Sbjct: 213 KKYHNV 218
>gi|56753309|gb|AAW24858.1| SJCHGC06087 protein [Schistosoma japonicum]
gi|226469806|emb|CAX70184.1| Heterogeneous nuclear ribonucleoprotein D0 [Schistosoma japonicum]
Length = 390
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
T + D RK+FV GL W+T + L F G++ +C + +D+ TG ++GF F+ ++
Sbjct: 51 TDENDDDSRKLFVGGLSWETNESDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESE 110
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
K L + + N+ + P K+ + + RKI+V + +V ++++
Sbjct: 111 DCVSKVLSVSEHWLKNK-------KIDP-----KKAKPSREPLRKIFVGGIDPEVTEDQI 158
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
R +F FG++E+ + +D GK + + + T ARKA+ + ++ G Q + A
Sbjct: 159 REYFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAARKAISKERQEIFGRQCDVRVAV 218
>gi|327282602|ref|XP_003226031.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 1
[Anolis carolinensis]
Length = 352
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFVDQAGVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 SRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 136 VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 185
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 110 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 169
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMSPTG 195
>gi|146260280|ref|NP_001041526.1| heterogeneous nuclear ribonucleoprotein A/B isoform 1 [Mus
musculus]
gi|89275690|gb|ABD66224.1| S1 protein C2 [Mus musculus]
gi|148701714|gb|EDL33661.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_a [Mus
musculus]
Length = 332
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F +FGE
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGQFGE 184
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K + +K LE
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 219 KKFHTVSG--SKCEIKVAQP 236
>gi|27695334|gb|AAH43069.1| Hnrpab protein [Mus musculus]
Length = 311
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F +FGE
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGQFGE 184
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K + +K LE
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 219 KKFHTVSG--SKCEIKVAQP 236
>gi|410903806|ref|XP_003965384.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like isoform
2 [Takifugu rubripes]
Length = 320
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 19/205 (9%)
Query: 63 SESISSLLEPYSKDQLIDLIAAAATKIPLLHD---HILETADRDVSQRKIFVHGLGWDTT 119
++I + +E + D ++A P+ + ++ + + + K+FV GL WDTT
Sbjct: 9 DDTIMTRMEEDGEGNCDDPMSATGDCGPMGDEADGSRIDASKNEEDEGKMFVGGLSWDTT 68
Query: 120 QESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASC 179
++ L F GE+ +C L +D +TG+++GF F++FK ++ K + K+N ++
Sbjct: 69 KKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFKEPESVEKVASQKEHKLNGKVIDP 128
Query: 180 QLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFD 236
+ A A +G+ +KI+V + D +EK+R +F FGE+E+ + +
Sbjct: 129 KKAK-------------AMKGKEPVKKIFVGGLSPDTPEEKVREYFGAFGEVESIELPME 175
Query: 237 ITTGKSRGFAIFVYKTVEGARKALE 261
T K RGF +K E + +E
Sbjct: 176 TKTNKRRGFCFITFKEEEPVKCIME 200
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 181 LASVGPTGPGVKEQGAAAQGER-----------KIYVSNVPRDVEKEKLRGFFERFGEIE 229
+++ G GP G A G R K++V + D K+ L+ +F ++GE+
Sbjct: 28 MSATGDCGP----MGDEADGSRIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFCKYGEVV 83
Query: 230 TGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ D TG+SRGF ++K E K + + G + +KA
Sbjct: 84 DCTLKLDPITGRSRGFGFVLFKEPESVEKVASQKEHKLNGKVIDPKKA 131
>gi|440898381|gb|ELR49895.1| Heterogeneous nuclear ribonucleoprotein A/B, partial [Bos grunniens
mutus]
Length = 262
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 11/170 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 109
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + D + K RGF +K E +K LE+ G + + + A
Sbjct: 110 IEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVA 159
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D + K +GF FI FK + K L+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 167 NPQRKVNNRMASCQLASVGP 186
++ + C++ P
Sbjct: 144 KKFHTISG--SKCEIKVAQP 161
>gi|327282604|ref|XP_003226032.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 2
[Anolis carolinensis]
Length = 325
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFVDQAGVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 SRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 136 VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 185
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 110 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 169
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMSPTG 195
>gi|226487556|emb|CAX74648.1| Heterogeneous nuclear ribonucleoprotein D0 [Schistosoma japonicum]
Length = 389
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
T + D RK+FV GL W+T + L F G++ +C + +D+ TG ++GF F+ ++
Sbjct: 51 TDENDDDSRKLFVGGLSWETNESDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESE 110
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
K L + + N+ + P K+ + + RKI+V + +V ++++
Sbjct: 111 DCVSKVLSVSEHWLKNK-------KIDP-----KKAKPSREPLRKIFVGGIDPEVTEDQI 158
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
R +F FG++E+ + +D GK + + + T ARKA+ + ++ G Q + A
Sbjct: 159 REYFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAARKAISKERQEIFGRQCDVRVAV 218
>gi|62898411|dbj|BAD97145.1| heterogeneous nuclear ribonucleoprotein AB isoform a variant [Homo
sapiens]
Length = 332
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 179
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K E +K LE
Sbjct: 180 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 214 KKFHTVSG--SKCEIKVAQP 231
>gi|293334069|ref|NP_001168848.1| uncharacterized protein LOC100382653 [Zea mays]
gi|392351175|ref|XP_003750865.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like isoform
2 [Rattus norvegicus]
gi|6562845|emb|CAB62553.1| heterogeneous nuclear ribonucleoprotein [Rattus norvegicus]
gi|149052496|gb|EDM04313.1| rCG34663, isoform CRA_a [Rattus norvegicus]
gi|223973327|gb|ACN30851.1| unknown [Zea mays]
Length = 332
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F +FGE
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGQFGE 184
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K + +K LE
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 219 KKFHTVSG--SKCEIKVAQP 236
>gi|332822801|ref|XP_518142.3| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Pan
troglodytes]
Length = 338
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 11/170 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 77 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 136
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 137 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 185
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + D K RGF +K E +K LE+ G + + + A
Sbjct: 186 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVA 235
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 160 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 219
Query: 167 NPQRKVNNRMASCQLA 182
V+ ++A
Sbjct: 220 KKFHTVSGSKCEIKVA 235
>gi|12851175|dbj|BAB28963.1| unnamed protein product [Mus musculus]
gi|148701715|gb|EDL33662.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Mus
musculus]
Length = 276
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F +FGE
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDPV-----------KKIFVGGLNPEATEEKIREYFGQFGE 184
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K + +K LE
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 219 KKFHTVSG--SKCEIKVAQP 236
>gi|58761496|ref|NP_001011724.1| heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]
gi|58761498|ref|NP_001011725.1| heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]
gi|190356061|sp|Q32P51.2|RA1L2_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A1-like 2;
Short=hnRNP A1-like 2; AltName: Full=hnRNP core protein
A1-like 2
gi|119572426|gb|EAW52041.1| heterogeneous nuclear ribonucleoprotein A1-like, isoform CRA_b
[Homo sapiens]
gi|119572427|gb|EAW52042.1| heterogeneous nuclear ribonucleoprotein A1-like, isoform CRA_b
[Homo sapiens]
Length = 320
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 TTPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
E++G+IE I D +GK RGFA + + K + + +GH + +KA +
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
Query: 283 RTSSNSS 289
S++SS
Sbjct: 186 MASASSS 192
>gi|440586615|emb|CCK33029.1| RRM domain protein Musashi [Platynereis dumerilii]
Length = 205
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TT E L F GEI+EC ++ D +T +++GF F+ + + K L N
Sbjct: 24 KMFVGGLSWQTTPEGLREYFTKYGEIKECMVMRDPITKRSRGFGFVTYADPGSVDKVLAN 83
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ ++ +LA P P +Q +KI+V + E ++ +F +FG+
Sbjct: 84 GPHELDTKLIDPKLAF--PRRPNATQQPKMVTRTKKIFVGGLSASTTLEDVKQYFSQFGK 141
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD T + RGFA ++ + K E ++C+K+
Sbjct: 142 IEDAMLMFDKATQRHRGFAFVTFECEDVVDKVCEIHFHEINNKMVECKKS 191
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT E + F G+IE+ L+ DK T + +GFAF+ F+ K +
Sbjct: 116 KKIFVGGLSASTTLEDVKQYFSQFGKIEDAMLMFDKATQRHRGFAFVTFECEDVVDKVCE 175
Query: 167 NPQRKVNNRMASCQ 180
++NN+M C+
Sbjct: 176 IHFHEINNKMVECK 189
>gi|6754222|ref|NP_034578.1| heterogeneous nuclear ribonucleoprotein A/B isoform 2 [Mus
musculus]
gi|729000|sp|Q99020.1|ROAA_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein A/B;
Short=hnRNP A/B; AltName: Full=CArG-binding factor-A;
Short=CBF-A
gi|220363|dbj|BAA14181.1| CArG-binding factor-A [Mus musculus]
gi|840648|gb|AAA92146.1| CArG box-binding factor [Mus musculus]
gi|12850708|dbj|BAB28821.1| unnamed protein product [Mus musculus]
gi|89275692|gb|ABD66225.1| S1 protein D2 [Mus musculus]
gi|148701716|gb|EDL33663.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_c [Mus
musculus]
Length = 285
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F +FGE
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGQFGE 184
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K + +K LE
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 219 KKFHTVSG--SKCEIKVAQP 236
>gi|324501271|gb|ADY40568.1| RNA-binding protein squid [Ascaris suum]
Length = 303
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 89/171 (52%), Gaps = 14/171 (8%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV G+ +D T E L + F GE+ + ++ D+ TG+++GFAF+ F T +A AL
Sbjct: 38 KKIFVGGIAYDVTNEDLCNYFSQFGEVAQAQVKFDRNTGRSRGFAFVEFATGEACKAALG 97
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
++ + N+ ++ + A ++ +K++V +P D +E LR F ++G
Sbjct: 98 TREQTLKNKQ--------------IEVKPAKSRENKKVFVGGLPADFPEEDLRAHFAQYG 143
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++E FD T R FA V++ E A +A P++ F + +KA
Sbjct: 144 KVEDIEWPFDKQTKARRNFAFIVFEEEESADRASSTPKQTFGSRECDVKKA 194
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 185 GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRG 244
G +G V + ++KI+V + DV E L +F +FGE+ + FD TG+SRG
Sbjct: 21 GASGGEVAKDSGKGNEDKKIFVGGIAYDVTNEDLCNYFSQFGEVAQAQVKFDRNTGRSRG 80
Query: 245 FAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
FA + T E + AL ++ + Q++ + A +N+
Sbjct: 81 FAFVEFATGEACKAALGTREQTLKNKQIEVKPAKSRENK 119
>gi|80477437|gb|AAI08267.1| Heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]
Length = 320
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 TTPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
E++G+IE I D +GK RGFA + + K + + +GH + +KA +
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
Query: 283 RTSSNSS 289
S++SS
Sbjct: 186 MASASSS 192
>gi|14110407|ref|NP_112740.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Homo
sapiens]
gi|114593989|ref|XP_001142372.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 4
[Pan troglodytes]
gi|332819433|ref|XP_003310370.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Pan
troglodytes]
gi|397524661|ref|XP_003832307.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Pan paniscus]
gi|397524663|ref|XP_003832308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Pan paniscus]
gi|74762096|sp|O14979.3|HNRDL_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL; AltName:
Full=AU-rich element RNA-binding factor; AltName:
Full=JKT41-binding protein; AltName: Full=Protein laAUF1
gi|4512254|dbj|BAA75239.1| JKTBP2 [Homo sapiens]
gi|4512257|dbj|BAA75241.1| JKTBP2 [Homo sapiens]
gi|15079822|gb|AAH11714.1| Heterogeneous nuclear ribonucleoprotein D-like [Homo sapiens]
gi|47115183|emb|CAG28551.1| HNRPDL [Homo sapiens]
gi|47938369|gb|AAH71944.1| Heterogeneous nuclear ribonucleoprotein D-like [Homo sapiens]
gi|63990763|gb|AAY40914.1| unknown [Homo sapiens]
gi|119626290|gb|EAX05885.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626291|gb|EAX05886.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626292|gb|EAX05887.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626293|gb|EAX05888.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626294|gb|EAX05889.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626296|gb|EAX05891.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|123987254|gb|ABM83797.1| heterogeneous nuclear ribonucleoprotein D-like [synthetic
construct]
gi|123999068|gb|ABM87118.1| heterogeneous nuclear ribonucleoprotein D-like [synthetic
construct]
gi|410248290|gb|JAA12112.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410296200|gb|JAA26700.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410339827|gb|JAA38860.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410339829|gb|JAA38861.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410339831|gb|JAA38862.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
Length = 420
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 310
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 205 VLELKEHKLDGKLIDPKRA 223
>gi|194387362|dbj|BAG60045.1| unnamed protein product [Homo sapiens]
Length = 323
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 62 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 121
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 122 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 170
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K E +K LE
Sbjct: 171 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 204
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 145 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 204
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 205 KKFHTVSG--SKCEIKVAQP 222
>gi|332801090|ref|NP_001193929.1| heterogeneous nuclear ribonucleoprotein D-like isoform b [Homo
sapiens]
gi|114593993|ref|XP_001142118.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Pan troglodytes]
gi|397524665|ref|XP_003832309.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Pan paniscus]
gi|119626295|gb|EAX05890.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_b [Homo
sapiens]
gi|410248288|gb|JAA12111.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410296198|gb|JAA26699.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
Length = 363
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 310
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 205 VLELKEHKLDGKLIDPKRA 223
>gi|410957345|ref|XP_003985289.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Felis catus]
Length = 363
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 310
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 205 VLELKEHKLDGKLIDPKRA 223
>gi|444721584|gb|ELW62314.1| Heterogeneous nuclear ribonucleoprotein D-like protein [Tupaia
chinensis]
Length = 301
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 30 KLFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDTVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ +GP ++ A +G+ +K++V + D +E+++ +F
Sbjct: 90 KEHKLDGKL-------IGP------QRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 136
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 137 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL DT++E + FG GEIE +L +D T + +GF FI + + K L+
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 167 NPQRKVNNRMASCQLA 182
+ ++ + ++A
Sbjct: 174 SRCHQIGSGKCEVKIA 189
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 26 QDDGKLFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDTVTGRSRGFGFVLFKDAASVDK 85
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + Q+A
Sbjct: 86 VLELKEHKLDGKLIGPQRA 104
>gi|140971918|ref|NP_112620.2| heterogeneous nuclear ribonucleoprotein A/B [Rattus norvegicus]
gi|392351173|ref|XP_003750864.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like isoform
1 [Rattus norvegicus]
gi|6911221|gb|AAF31437.1|AF216753_1 CArG-binding factor A [Rattus norvegicus]
gi|6562847|emb|CAB62554.1| heterogeneous nuclear ribonucleoprotein [Rattus norvegicus]
gi|44890256|gb|AAH66664.1| Hnrpab protein [Rattus norvegicus]
gi|149052497|gb|EDM04314.1| rCG34663, isoform CRA_b [Rattus norvegicus]
Length = 285
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F +FGE
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGQFGE 184
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K + +K LE
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 219 KKFHTVSG--SKCEIKVAQP 236
>gi|26345118|dbj|BAC36208.1| unnamed protein product [Mus musculus]
Length = 285
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F +FGE
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGQFGE 184
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K + +K LE
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 219 KKFHTVSG--SKCEIKVAQP 236
>gi|296486392|tpg|DAA28505.1| TPA: heterogeneous nuclear ribonucleoprotein D-like [Bos taurus]
Length = 420
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 310
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 205 VLELKEHKLDGKLIDPKRA 223
>gi|8778468|gb|AAF79476.1|AC022492_20 F1L3.34 [Arabidopsis thaliana]
Length = 392
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 4/188 (2%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
V RK+FV G+ W+TT E+ + FG GE+ + ++ D++TG +GF F+ F A K
Sbjct: 86 VYVRKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 145
Query: 164 ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223
L+ +++R L P G + A ++ RKI+V +P +E+++L+ +F
Sbjct: 146 VLEEDH-VIDDR--KVDLKRTLPRGDKDTDIKAVSK-TRKIFVGGLPPLLEEDELKNYFC 201
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
+G+I I +D TG+SRGF ++T + + + + G + K AE K
Sbjct: 202 VYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRT 261
Query: 284 TSSNSSSS 291
NS S
Sbjct: 262 GRDNSFRS 269
>gi|318086954|gb|ADV40069.1| putative heterogeneous nuclear ribonucleoprotein isoform A
[Latrodectus hesperus]
Length = 293
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 5/189 (2%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV GL W+TTQE L F GE+ +C ++ + T +++GF F+ FK K L +
Sbjct: 17 KIFVGGLSWETTQEKLQEYFSRYGEVVDCVVMKNSETNRSRGFGFVTFKDVACVAKVLSS 76
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+V+ R ++ S + +Q A K+++ +P + + LR FF R+G
Sbjct: 77 GPHEVDGRTIDPKVCSSRDS-----QQNKKAGQYPKVFLGGLPPNCTETDLRSFFSRYGT 131
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ + +D KSRGF ++T + ++ E G +++C+ A + S
Sbjct: 132 VVEVVLMYDQEKKKSRGFGFLSFETEDSVKQVCAEHFVKINGKKIECKHAEPRDKKRPSQ 191
Query: 288 SSSSNNQAQ 296
+S Q
Sbjct: 192 GPNSGTPNQ 200
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 197 AAQGER--KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVE 254
QGE KI+V + + +EKL+ +F R+GE+ + + T +SRGF +K V
Sbjct: 9 VGQGEEAGKIFVGGLSWETTQEKLQEYFSRYGEVVDCVVMKNSETNRSRGFGFVTFKDVA 68
Query: 255 GARKAL 260
K L
Sbjct: 69 CVAKVL 74
>gi|297673870|ref|XP_002814970.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Pongo abelii]
gi|332233343|ref|XP_003265861.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Nomascus leucogenys]
gi|395735091|ref|XP_003776522.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Pongo abelii]
Length = 420
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>gi|395735093|ref|XP_003776523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Pongo abelii]
gi|441625206|ref|XP_004089054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Nomascus
leucogenys]
Length = 363
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 310
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 205 VLELKEHKLDGKLIDPKRA 223
>gi|344284839|ref|XP_003414172.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D isoform 2
[Loxodonta africana]
Length = 363
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>gi|74001737|ref|XP_858404.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform
12 [Canis lupus familiaris]
Length = 420
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 310
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 205 VLELKEHKLDGKLIDPKRA 223
>gi|410957341|ref|XP_003985287.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Felis catus]
gi|410957343|ref|XP_003985288.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Felis catus]
Length = 420
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>gi|395834189|ref|XP_003790094.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Otolemur garnettii]
Length = 363
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>gi|20664272|pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
gi|55670114|pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
gi|55670116|pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
gi|55670118|pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
gi|55670120|pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
gi|55670122|pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
gi|55670124|pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
gi|55670126|pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
gi|55670128|pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTG--PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + A PG A +KI+V + D E+ LR +FE+
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPG------AHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284
+G+IE I D +GK RGFA + + K + + GH + +KA +
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
Query: 285 SSNSS 289
S++SS
Sbjct: 188 SASSS 192
>gi|39654464|pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 13 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 167 NPQRKVNNRMASCQLASVGPTG--PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + A PG A +KI+V + D E+ LR +FE+
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSQRPG------AHLTVKKIFVGGIKEDTEEHHLRDYFEQ 126
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284
+G+IE I D +GK RGFA + + K + + GH + +KA +
Sbjct: 127 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 186
Query: 285 SSNSS 289
S++SS
Sbjct: 187 SASSS 191
>gi|74001731|ref|XP_858286.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 9
[Canis lupus familiaris]
Length = 363
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 310
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 205 VLELKEHKLDGKLIDPKRA 223
>gi|386781544|ref|NP_001247638.1| heterogeneous nuclear ribonucleoprotein D-like [Macaca mulatta]
gi|380787105|gb|AFE65428.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Macaca
mulatta]
gi|380787107|gb|AFE65429.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Macaca
mulatta]
gi|383410015|gb|AFH28221.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Macaca
mulatta]
Length = 420
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>gi|387016398|gb|AFJ50318.1| HNRPA1 protein [Crotalus adamanteus]
Length = 212
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL + F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 27 RKLFIGGLSFETTDESLRNHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEVDAAMN 86
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 87 ARPHKVDGRVVEPKRA----VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 142
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 143 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 202
Query: 287 NSS 289
+SS
Sbjct: 203 SSS 205
>gi|144226849|ref|NP_001077194.1| heterogeneous nuclear ribonucleoprotein D-like [Bos taurus]
gi|134024605|gb|AAI34449.1| HNRPDL protein [Bos taurus]
Length = 420
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 310
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 205 VLELKEHKLDGKLIDPKRA 223
>gi|47228465|emb|CAG05285.1| unnamed protein product [Tetraodon nigroviridis]
Length = 249
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K
Sbjct: 58 KMFVGGLSWDTTKKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFKDAESVEKVASQ 117
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K+N ++ + P ++ A +G+ +KI+V + D +EK+R +F
Sbjct: 118 KEHKLNGKV-------IDP------KKAKAMKGKEPVKKIFVGGLSPDTPEEKVREYFGA 164
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGE+E+ + + T K RGF +K E + +E
Sbjct: 165 FGEVESIELPMETKTNKRRGFCFITFKEEEPVKCIME 201
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 182 ASVGPTGPGVKEQGAAAQGER-----------KIYVSNVPRDVEKEKLRGFFERFGEIET 230
A++G GP G A G R K++V + D K+ L+ +F ++GE+
Sbjct: 30 ATLGDCGP----MGDEADGSRIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFCKYGEVVD 85
Query: 231 GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ D TG+SRGF ++K E K + + G + +KA
Sbjct: 86 CTLKLDPITGRSRGFGFVLFKDAESVEKVASQKEHKLNGKVIDPKKA 132
>gi|47221330|emb|CAF97248.1| unnamed protein product [Tetraodon nigroviridis]
Length = 312
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 11/181 (6%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+E D K+FV GL WDT+++ L F G++ +C + D +G+++GF F++FK
Sbjct: 46 IEATKGDEDTGKMFVGGLSWDTSKKDLKDYFTKFGDVSDCTIKFDSDSGRSRGFGFVLFK 105
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L+ + +++ R+ + A P +KI+V + + +E
Sbjct: 106 DPSSVEKVLQQKEHRLDGRLIDPKRAMAMKKEP-----------VKKIFVGGLNPEATEE 154
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
+R +F FGEIE + D + K RGF YK A+K LE+ EG + + +
Sbjct: 155 TIREYFGAFGEIENIDLPLDPKSKKRRGFIFITYKEEASAKKCLEKKFHTVEGSRCELKL 214
Query: 277 A 277
A
Sbjct: 215 A 215
>gi|356513961|ref|XP_003525676.1| PREDICTED: nuclear pore membrane glycoprotein 210-like [Glycine max]
Length = 2304
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 8/188 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIF+ GL +TT + FG GEI + ++ D+ TG+ +GF FI + K +++
Sbjct: 1977 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED 2036
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +N + ++ P G G+ +KI+V +P +V +++ R FF R+GE
Sbjct: 2037 PH-IINGKQV--EIKRTIPRG----AVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGE 2089
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKM-FEGHQLQCQKAAEGKNRTSS 286
++ I D +T +SRGF + + E L K+ F G Q++ +KA K ++
Sbjct: 2090 VKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIDFAGSQVEIKKAEPKKPSSAP 2149
Query: 287 NSSSSNNQ 294
SS +N
Sbjct: 2150 PSSKRHND 2157
>gi|344284837|ref|XP_003414171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D isoform 1
[Loxodonta africana]
Length = 420
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>gi|402869385|ref|XP_003898743.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Papio anubis]
gi|402869387|ref|XP_003898744.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Papio anubis]
Length = 420
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>gi|326928651|ref|XP_003210489.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Meleagris gallopavo]
gi|449474690|ref|XP_004175898.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Taeniopygia
guttata]
gi|449474694|ref|XP_002196057.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Taeniopygia
guttata]
Length = 262
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L+
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ +++ R+ + A P +KI+V + + +EK+R +F FGEI
Sbjct: 61 EHRLDGRLIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGEI 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
E + D T K RGF +K + +K LE+
Sbjct: 110 EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK 143
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D T K +GF FI FK K L
Sbjct: 83 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVL- 141
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 142 --EKKFHNVSGSKCEIKVAQP 160
>gi|444513904|gb|ELV10489.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Tupaia
chinensis]
Length = 432
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 9 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 68
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 69 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 124
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 125 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 175
>gi|410903808|ref|XP_003965385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like isoform
3 [Takifugu rubripes]
Length = 264
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 63 SESISSLLEPYSKDQLIDLIAAAATKIPLLHD---HILETADRDVSQRKIFVHGLGWDTT 119
++I + +E + D ++A P+ + ++ + + + K+FV GL WDTT
Sbjct: 9 DDTIMTRMEEDGEGNCDDPMSATGDCGPMGDEADGSRIDASKNEEDEGKMFVGGLSWDTT 68
Query: 120 QESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASC 179
++ L F GE+ +C L +D +TG+++GF F++FK ++ K + K+N ++
Sbjct: 69 KKDLKDYFCKYGEVVDCTLKLDPITGRSRGFGFVLFKEPESVEKVASQKEHKLNGKV--- 125
Query: 180 QLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFD 236
+ P ++ A +G+ +KI+V + D +EK+R +F FGE+E+ + +
Sbjct: 126 ----IDP------KKAKAMKGKEPVKKIFVGGLSPDTPEEKVREYFGAFGEVESIELPME 175
Query: 237 ITTGKSRGFAIFVYKTVEGARKALE 261
T K RGF +K E + +E
Sbjct: 176 TKTNKRRGFCFITFKEEEPVKCIME 200
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 181 LASVGPTGPGVKEQGAAAQGER-----------KIYVSNVPRDVEKEKLRGFFERFGEIE 229
+++ G GP G A G R K++V + D K+ L+ +F ++GE+
Sbjct: 28 MSATGDCGP----MGDEADGSRIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFCKYGEVV 83
Query: 230 TGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ D TG+SRGF ++K E K + + G + +KA
Sbjct: 84 DCTLKLDPITGRSRGFGFVLFKEPESVEKVASQKEHKLNGKVIDPKKA 131
>gi|296196170|ref|XP_002745712.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D isoform 1
[Callithrix jacchus]
gi|390460703|ref|XP_003732527.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D isoform 2
[Callithrix jacchus]
Length = 420
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 256
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 257 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>gi|39644771|gb|AAH07392.2| HNRPDL protein, partial [Homo sapiens]
Length = 415
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 144 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 203
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 204 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 250
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 251 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 287
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 194 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 253
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 254 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 305
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 140 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 199
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 200 VLELKEHKLDGKLIDPKRA 218
>gi|47086453|ref|NP_997961.1| musashi homolog 2a [Danio rerio]
gi|28374420|gb|AAH45335.1| Musashi homolog 2a (Drosophila) [Danio rerio]
gi|182889228|gb|AAI64813.1| Msi2 protein [Danio rerio]
Length = 388
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF FI F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSASTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVECKKA 185
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|433286562|pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 15 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 74
Query: 167 NPQRKVNNRMASCQLASVGPTG--PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + A PG A +KI+V + D E+ LR +FE+
Sbjct: 75 ARPHKVDGRVVEPKRAVSREDSQRPG------AHLTVKKIFVGGIKEDTEEHHLRDYFEQ 128
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284
+G+IE I D +GK RGFA + + K + + GH + +KA +
Sbjct: 129 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 188
Query: 285 SSNSS 289
S++SS
Sbjct: 189 SASSS 193
>gi|426344797|ref|XP_004038940.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Gorilla gorilla gorilla]
Length = 363
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 310
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 205 VLELKEHKLDGKLIDPKRA 223
>gi|218199915|gb|EEC82342.1| hypothetical protein OsI_26646 [Oryza sativa Indica Group]
Length = 472
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 25/185 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ W+T ++ L FG GE+ E ++ D+ TG+A+GF F+VF A + +
Sbjct: 7 KLFVGGISWETDEDRLREYFGRFGEVTEAVIMRDRNTGRARGFGFVVFTDAGVAERVTMD 66
Query: 168 PQRKVNNRMASCQLA---------------SVGPTGPGVKEQGAAAQGERKIYVSNVPRD 212
+ ++ RM + A S+G GPG RKI+V + +
Sbjct: 67 -KHMIDGRMVEAKKAVPRDDQSITSKNNGSSIGSPGPGRT---------RKIFVGGLASN 116
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
V + + R +FE+FG I + +D T + RGF Y + + KAL + G +
Sbjct: 117 VTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMV 176
Query: 273 QCQKA 277
+ ++A
Sbjct: 177 EVKRA 181
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RKIFV GL + T+ F G I + ++ D T + +GF FI + + A KAL
Sbjct: 106 RKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALH 165
Query: 167 NPQRKVNNRMASCQLA 182
++N +M + A
Sbjct: 166 KNFHELNGKMVEVKRA 181
>gi|426344793|ref|XP_004038938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Gorilla gorilla gorilla]
gi|426344795|ref|XP_004038939.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Gorilla gorilla gorilla]
Length = 420
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>gi|148664250|ref|NP_057899.2| heterogeneous nuclear ribonucleoprotein D-like [Mus musculus]
Length = 420
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 310
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 205 VLELKEHKLDGKLIDPKRA 223
>gi|47086935|ref|NP_998467.1| heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
gi|44890703|gb|AAH66681.1| Zgc:77052 [Danio rerio]
Length = 309
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + + L+
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A P +KI+V + + +EK+R +F FGE
Sbjct: 106 KEHRLDGRQIDPKRAMAIKKEP-----------VKKIFVGGLNPETTEEKIREYFGSFGE 154
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IET + D T K RGF +K +K LE
Sbjct: 155 IETIELPTDPKTSKRRGFVFITFKEEFAVKKILE 188
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT+E + FG GEIE +L D T K +GF FI FK A K L
Sbjct: 129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKIL- 187
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 188 --EKKYHNVCGSKCEIKIAQP 206
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 183 SVGPTGPGVKEQGAAAQGER---KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239
+ G G G Q A++ E K++V + D K+ L+ +F +FGE+ I D T
Sbjct: 23 AAGENGAGEGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNT 82
Query: 240 GKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G+SRGF ++K + + L++ + +G Q+ ++A
Sbjct: 83 GRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRA 120
>gi|395834185|ref|XP_003790092.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Otolemur garnettii]
gi|395834187|ref|XP_003790093.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Otolemur garnettii]
Length = 418
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>gi|126330931|ref|XP_001362287.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D [Monodelphis
domestica]
Length = 417
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 146 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 205
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 206 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 252
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 253 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 289
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 196 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 255
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L+N ++ + C++ P
Sbjct: 256 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLENRYHQIGS--GKCEIKVAQP 307
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 142 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 201
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 202 VLELKEHKLDGKLIDPKRA 220
>gi|74141832|dbj|BAE40987.1| unnamed protein product [Mus musculus]
Length = 320
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++GEIE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGEIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|390464603|ref|XP_003733247.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like, partial [Callithrix jacchus]
Length = 288
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 10/174 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQG---AAAQGERKIYVSNVPRDVEKEKLRGFFE 223
KV+ R+ V P +E +A +KI+V + D E+ LR +FE
Sbjct: 74 ARPHKVDGRV-------VEPKRAVSREDSQRPSAHLTVKKIFVGGIKEDTEEHHLRDYFE 126
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|76096336|ref|NP_001028868.1| heterogeneous nuclear ribonucleoprotein D-like [Rattus norvegicus]
gi|123783017|sp|Q3SWU3.1|HNRDL_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL
gi|74356265|gb|AAI04684.1| Heterogeneous nuclear ribonucleoprotein D-like [Rattus norvegicus]
Length = 322
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L+ + S K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK
Sbjct: 41 LDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFK 100
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDV 213
+ K L+ + K++ ++ + A A +G+ +K++V + D
Sbjct: 101 DAASVDKVLELKEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDT 147
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
+E+++ +F FGEIE + D T + RGF Y E +K LE
Sbjct: 148 SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
>gi|5052976|gb|AAD38787.1|AF153444_1 hnRNP A/B related protein, partial [Felis catus]
Length = 279
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + + TG++KGF FI+FK + K L
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 125 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 173
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T K RGF +K E +K LE
Sbjct: 174 IEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D T K +GF FI FK + K L+
Sbjct: 148 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Query: 167 NPQRKVNNRMASCQLASVGP 186
++ + C++ P
Sbjct: 208 KKFHTISG--SKCEIKVAQP 225
>gi|71013252|ref|XP_758567.1| hypothetical protein UM02420.1 [Ustilago maydis 521]
gi|46098225|gb|EAK83458.1| hypothetical protein UM02420.1 [Ustilago maydis 521]
Length = 588
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 29/224 (12%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
K+F+ GL WDTT++SL F GE+ C ++ D +TG+++GFAF+ F KA +
Sbjct: 170 KMFIGGLNWDTTEDSLRRYFSQFGEVGNCAIMRDNMTGRSRGFAFLNFVDPKAVNTVMVR 229
Query: 167 ---------NPQRKV----NNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+P+R + +N+ + G G G+ + +K++V +P V
Sbjct: 230 EHYLDGKVIDPKRAIPRPQHNQQGGGHHNNYNNGGGGGGGGGSYSASSQKLFVGGLPPSV 289
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
R FFE+FG + D TGK RGF Y L +F+G ++
Sbjct: 290 TPATFRTFFEQFGTLSDCTCMMDRETGKPRGFGFLTYADDSSLNHVLNTRPIVFDGKEVD 349
Query: 274 CQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQ----PMLQGQQQG 313
++A S N+ + I++QQ+ M G QQG
Sbjct: 350 VKRA-----------QSKNDPQSLQIRRQQRMDNPEMAYGMQQG 382
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
E K+++ + D ++ LR +F +FGE+ I D TG+SRGFA +
Sbjct: 168 EGKMFIGGLNWDTTEDSLRRYFSQFGEVGNCAIMRDNMTGRSRGFAFLNF 217
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
S +K+FV GL T + + F G + +C ++D+ TGK +GF F+ +
Sbjct: 275 ASSQKLFVGGLPPSVTPATFRTFFEQFGTLSDCTCMMDRETGKPRGFGFLTY 326
>gi|213513574|ref|NP_001133787.1| RNA-binding protein Musashi homolog 2 [Salmo salar]
gi|209155330|gb|ACI33897.1| RNA-binding protein Musashi homolog 2 [Salmo salar]
Length = 366
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFITFEGEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF FI F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFITFEGEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|357602467|gb|EHJ63411.1| squid protein-like proteinue [Danaus plexippus]
Length = 288
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT + L F GEIE + D TG+++GFAFIVFK +
Sbjct: 38 RD-DDRKLFVGGLSWETTDKELREHFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSI 96
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +NN+ V P ++ A G KI+V + ++ ++++ F
Sbjct: 97 DKVMAAGDHTINNK-------KVDP------KKAKARHG--KIFVGGLSSEISDDEIKNF 141
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F FG I + FD T + +GF +++ + + L+ P++ G ++ ++A
Sbjct: 142 FSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIAGKEVDVKRAT 198
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV GL + + + + + F G I E ++ DK + KGF FI F++ + + LK
Sbjct: 123 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKT 182
Query: 168 PQRKVNNRMASCQLASVGP 186
P++ + + + A+ P
Sbjct: 183 PKQTIAGKEVDVKRATPKP 201
>gi|148225236|ref|NP_001084027.1| musashi RNA-binding protein 2 [Xenopus laevis]
gi|214936|gb|AAA50004.1| ribonucleoprotein [Xenopus laevis]
Length = 406
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFNKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE++G+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQYGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQYGKVEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|355691911|gb|EHH27096.1| hypothetical protein EGK_17210, partial [Macaca mulatta]
gi|355750475|gb|EHH54813.1| hypothetical protein EGM_15724, partial [Macaca fascicularis]
Length = 262
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 11/170 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 109
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + D K RGF +K E +K LE+ G + + + A
Sbjct: 110 IEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVA 159
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 143
Query: 167 NPQRKVNNRMASCQLASVGP 186
++ + C++ P
Sbjct: 144 KKFHTISG--SKCEIKVAQP 161
>gi|417410446|gb|JAA51696.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 404
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 133 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 192
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 193 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 240
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 241 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 276
>gi|345322713|ref|XP_001506312.2| PREDICTED: RNA-binding protein Musashi homolog 2-like
[Ornithorhynchus anatinus]
Length = 251
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 6/173 (3%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
S K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K
Sbjct: 15 SSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
L P +++++ ++A + Q +KI+V + + E ++ +FE+
Sbjct: 75 LAQPHHELDSKTIDPKVAF------PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQ 128
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FG++E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 129 FGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 181
>gi|242046120|ref|XP_002460931.1| hypothetical protein SORBIDRAFT_02g037690 [Sorghum bicolor]
gi|241924308|gb|EER97452.1| hypothetical protein SORBIDRAFT_02g037690 [Sorghum bicolor]
Length = 471
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 25/186 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ W+T ++ L FG GE+ E ++ D+ TG+A+GF F+VF A + +
Sbjct: 7 KLFVGGISWETDEDRLREYFGRFGEVTEAVIMRDRNTGRARGFGFVVFADSGIAERVTMD 66
Query: 168 PQRKVNNRMASCQLA---------------SVGPTGPGVKEQGAAAQGERKIYVSNVPRD 212
+ ++ RM + A S+G GPG RKI+V + +
Sbjct: 67 -KHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPGRT---------RKIFVGGLASN 116
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
V + + R +FE+FG I + +D T + RGF Y + + KAL + G +
Sbjct: 117 VTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMV 176
Query: 273 QCQKAA 278
+ ++A
Sbjct: 177 EVKRAV 182
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RKIFV GL + T+ F G I + ++ D T + +GF FI + + A KAL
Sbjct: 106 RKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALH 165
Query: 167 NPQRKVNNRMASCQLA 182
++N +M + A
Sbjct: 166 KNFHELNGKMVEVKRA 181
>gi|213623508|gb|AAI69841.1| Ribonucleoprotein [Xenopus laevis]
Length = 406
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFNKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE++G+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQYGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQYGKVEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|403296845|ref|XP_003939304.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Saimiri
boliviensis boliviensis]
Length = 320
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V ++ D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGDIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|449479911|ref|XP_004177058.1| PREDICTED: RNA-binding protein Musashi homolog 2 isoform 2
[Taeniopygia guttata]
Length = 251
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQ 77
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 78 PHHELDSKTIDPKVAF------PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 131
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 132 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 181
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 106 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 165
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 166 IHFHEINNKMVECKKA 181
>gi|301777376|ref|XP_002924104.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Ailuropoda melanoleuca]
Length = 261
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ +++ R+ + A P +KI+V + + +EK+R +F FGEI
Sbjct: 61 EHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGEI 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E + D + K RGF +K E +K LE+ G + + + A
Sbjct: 110 EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVA 158
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D + K +GF FI FK + K L+
Sbjct: 83 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 142
Query: 167 NPQRKVNNRMASCQLASVGP 186
++ + C++ P
Sbjct: 143 KKFHTISG--SKCEIKVAQP 160
>gi|354472023|ref|XP_003498240.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Cricetulus
griseus]
Length = 343
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 78 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 131
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 132 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 181
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 106 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 165
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 166 IHFHEINNKMVECKKA 181
>gi|441632410|ref|XP_003252929.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Nomascus leucogenys]
Length = 426
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 67 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 126
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 127 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 182
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 183 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 233
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RK+++ + + E LR FE++G + + D T +SRGF Y TVE A+
Sbjct: 67 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 126
Query: 262 EPQKMFEGHQLQCQKAA 278
+G ++ ++A
Sbjct: 127 ARPHKVDGRVVEPKRAV 143
>gi|344246933|gb|EGW03037.1| Heterogeneous nuclear ribonucleoprotein A/B [Cricetulus griseus]
Length = 211
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ +++ R+ + A P +KI+V + + +EK+R +F +FGEI
Sbjct: 61 EHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGQFGEI 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
E + D K RGF YK + +K LE+
Sbjct: 110 EAIELPIDPKLNKRRGFVFITYKEEDPVKKVLEK 143
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI +K K L+
Sbjct: 83 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITYKEEDPVKKVLE 142
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 143 KKFHTVSG--SKCEIKVAQP 160
>gi|119614912|gb|EAW94506.1| musashi homolog 2 (Drosophila), isoform CRA_a [Homo sapiens]
Length = 346
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|321459101|gb|EFX70158.1| hypothetical protein DAPPUDRAFT_189289 [Daphnia pulex]
Length = 334
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+FV GL W TT + L FG GEIE + +D TG+++GFAF+VFK+ + K +
Sbjct: 68 RKLFVGGLSWATTDKELREHFGKYGEIESITVKMDPQTGRSRGFAFLVFKSAENLDKVMN 127
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ +N + + A A G KI+V +P+D +E +R FF FG
Sbjct: 128 AGEHIINGKRVDPKKAK-------------ARSG--KIFVGGLPQDTTEETIRSFFGTFG 172
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
I + FD + + F Y L+ P+++ G ++ +KA
Sbjct: 173 NIVEIEMPFDRVKNQRKNFCFITYDNENVVFDLLKTPKQVINGKEVDVKKAT 224
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV GL DTT+E++ S FG G I E ++ D+V + K F FI + LK
Sbjct: 149 KIFVGGLPQDTTEETIRSFFGTFGNIVEIEMPFDRVKNQRKNFCFITYDNENVVFDLLKT 208
Query: 168 PQRKVNNRMASCQLASVGPTGPG 190
P++ +N + + A+ P G
Sbjct: 209 PKQVINGKEVDVKKATPKPDSFG 231
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+RK++V + ++LR F ++GEIE+ + D TG+SRGFA V+K+ E K +
Sbjct: 67 DRKLFVGGLSWATTDKELREHFGKYGEIESITVKMDPQTGRSRGFAFLVFKSAENLDKVM 126
Query: 261 EEPQKMFEGHQLQCQKA 277
+ + G ++ +KA
Sbjct: 127 NAGEHIINGKRVDPKKA 143
>gi|50059467|gb|AAT02209.2| AUF1 similar protein [Paracentrotus lividus]
gi|51872093|gb|AAU12170.1| AUF1-like protein [Paracentrotus lividus]
Length = 361
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 10/155 (6%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
+K+FV GL W+TT E+L F G +++C++ D+VT K +GF FI+F++ + K
Sbjct: 48 DDKKLFVGGLAWNTTPETLQQYFSAYGTVQDCEIKKDQVTKKPRGFGFILFESADSVTKV 107
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
L P+ KV+++ + P P K + I++ + D++ + ++ +F +
Sbjct: 108 LDVPEHKVDDKTIDPK-----PANPLKKPEKKKK-----IFIGGIGSDLKDDDIKSYFSQ 157
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKA 259
FG + D TTG+ GFA Y+T + A+KA
Sbjct: 158 FGTVVETEFPEDKTTGRRLGFAFVKYETSDEAQKA 192
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
IF+ G+G D + + S F G + E + DK TG+ GFAF+ ++T A KA +
Sbjct: 137 IFIGGIGSDLKDDDIKSYFSQFGTVVETEFPEDKTTGRRLGFAFVKYETSDEAQKAQNSR 196
Query: 169 QRKVNNRMASCQLA 182
++N+ A
Sbjct: 197 FHTISNKKVEVSEA 210
>gi|395833926|ref|XP_003789968.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Otolemur
garnettii]
Length = 341
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 1 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG++
Sbjct: 61 RHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKV 114
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 115 DDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 163
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 88 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 147
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 148 IHFHEINNKMVECKKAQPKEVMSPTG 173
>gi|221480563|gb|EEE19030.1| hypothetical protein TGGT1_105690 [Toxoplasma gondii GT1]
gi|221505534|gb|EEE31179.1| RNA-binding protein, putative [Toxoplasma gondii VEG]
Length = 430
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 10/170 (5%)
Query: 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK- 159
D+++ RK+FV GL TT +SL + F G++ + +++ DK TG+++GF FI F T
Sbjct: 117 DKELQMRKLFVGGLSRSTTTDSLRTYFQQYGDVADSEVLFDKFTGRSRGFGFITFTTPDP 176
Query: 160 -AAVKALKN--PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
A V +++ +V R A + + GPG +++V + DV E
Sbjct: 177 VARVADMRHTVDGTQVEVRRAIPREEARDHGGPGADRDAG------RLFVGGISDDVNDE 230
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKM 266
LR +F +GEI++ + D + RGF +++ + A KA+ +K+
Sbjct: 231 SLRAYFRHYGEIQSANVMVDRQNNRPRGFGFVIFRNPDDAEKAIGSHKKL 280
>gi|237838585|ref|XP_002368590.1| heterogeneous nuclear ribonucleoprotein A3, putative [Toxoplasma
gondii ME49]
gi|211966254|gb|EEB01450.1| heterogeneous nuclear ribonucleoprotein A3, putative [Toxoplasma
gondii ME49]
Length = 430
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 10/170 (5%)
Query: 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK- 159
D+++ RK+FV GL TT +SL + F G++ + +++ DK TG+++GF FI F T
Sbjct: 117 DKELQMRKLFVGGLSRSTTTDSLRTYFQQYGDVADSEVLFDKFTGRSRGFGFITFTTPDP 176
Query: 160 -AAVKALKN--PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
A V +++ +V R A + + GPG +++V + DV E
Sbjct: 177 VARVADMRHTVDGTQVEVRRAIPREEARDHGGPGADRDAG------RLFVGGISDDVNDE 230
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKM 266
LR +F +GEI++ + D + RGF +++ + A KA+ +K+
Sbjct: 231 SLRAYFRHYGEIQSANVMVDRQNNRPRGFGFVIFRNPDDAEKAIGSHKKL 280
>gi|291389294|ref|XP_002711081.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Oryctolagus
cuniculus]
Length = 371
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|344255674|gb|EGW11778.1| Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3
[Cricetulus griseus]
Length = 340
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 13/189 (6%)
Query: 102 RDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
RD S RK IF+ L Q+ L F G I CK+V+D+ G++KG+ F+ F+
Sbjct: 91 RDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDE-NGQSKGYGFVHFE 149
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE-RKIYVSNVPRDVEK 215
+ A +A++ K+NN + ++ VG P + + A + + +YV N P + +
Sbjct: 150 KEECAERAIE----KINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDN 205
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQC 274
EKL+ F FGEI++ + D GKS+GF Y + A A+ K EG L C
Sbjct: 206 EKLKEMFSEFGEIKSACVMKD-NEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYC 264
Query: 275 QKAAEGKNR 283
+A + R
Sbjct: 265 ARAQRKEER 273
>gi|17157989|ref|NP_473384.1| RNA-binding protein Musashi homolog 2 isoform 1 [Mus musculus]
gi|51316506|sp|Q920Q6.1|MSI2H_MOUSE RecName: Full=RNA-binding protein Musashi homolog 2;
Short=Musashi-2
gi|15982562|dbj|BAB69485.1| RNA-binding protein Musashi2-L [Mus musculus]
gi|37619701|tpg|DAA01567.1| TPA_exp: RNA-binding protein [Mus musculus]
gi|74146912|dbj|BAE41407.1| unnamed protein product [Mus musculus]
gi|74150444|dbj|BAE32260.1| unnamed protein product [Mus musculus]
Length = 346
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|395542045|ref|XP_003772945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like
[Sarcophilus harrisii]
Length = 475
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 204 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 263
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 264 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 310
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 311 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 347
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 254 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 313
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L+N ++ + C++ P
Sbjct: 314 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLENRYHQIGS--GKCEIKVAQP 365
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 200 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 259
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 260 VLELKEHKLDGKLIDPKRA 278
>gi|393912245|gb|EJD76653.1| musashi [Loa loa]
Length = 336
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TT E L FG GE+ EC ++ D T +A+GF FI F + K L
Sbjct: 31 KMFIGGLSWQTTAEGLRDYFGKFGEVNECMVMRDPATKRARGFGFITFTDPASVDKVLAQ 90
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A K Q +K+++ + E ++ +FE++G+
Sbjct: 91 ELHELDGKKIDPKVAFPK------KAQSKMIIKTKKVFIGGLSATSTLEDMKNYFEQYGK 144
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF + + + K E G ++C+KA
Sbjct: 145 VEDAMLMFDKTTQRHRGFGFITFDNDDVSDKVCEIHFHEINGKMVECKKA 194
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
+ +K+F+ GL +T E + + F G++E+ L+ DK T + +GF FI F + K
Sbjct: 116 IKTKKVFIGGLSATSTLEDMKNYFEQYGKVEDAMLMFDKTTQRHRGFGFITFDNDDVSDK 175
Query: 164 ALKNPQRKVNNRMASCQLA 182
+ ++N +M C+ A
Sbjct: 176 VCEIHFHEINGKMVECKKA 194
>gi|270001992|gb|EEZ98439.1| hypothetical protein TcasGA2_TC000928 [Tribolium castaneum]
Length = 344
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT + L FG GEIE + D TG+++GFAFIVF +A
Sbjct: 55 RD-DDRKLFVGGLSWETTDKELRDHFGQYGEIESINVKTDPNTGRSRGFAFIVFNNAEAI 113
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + + +NN+ V P ++ A G KI+V + ++ + ++ F
Sbjct: 114 DKVVAAGEHIINNK-------KVDP------KKAKARHG--KIFVGGLTNELSDDDIKNF 158
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F ++G I + FD T + +GF +++ + + L+ P++ + ++ +KA
Sbjct: 159 FSQYGTIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIKDKEVDVKKAT 215
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGE 132
++ + ID + AA I +++ ++ KIFV GL + + + + + F G
Sbjct: 107 FNNAEAIDKVVAAGEHI--INNKKVDPKKAKARHGKIFVGGLTNELSDDDIKNFFSQYGT 164
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
I E ++ DK + KGF FI F++ + + LK P++ + ++ + A+ P
Sbjct: 165 IIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIKDKEVDVKKATPKP 218
>gi|91076876|ref|XP_976197.1| PREDICTED: similar to Bmsqd-2 isoform 3 [Tribolium castaneum]
Length = 323
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT + L FG GEIE + D TG+++GFAFIVF +A
Sbjct: 55 RD-DDRKLFVGGLSWETTDKELRDHFGQYGEIESINVKTDPNTGRSRGFAFIVFNNAEAI 113
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + + +NN+ V P ++ A G KI+V + ++ + ++ F
Sbjct: 114 DKVVAAGEHIINNK-------KVDP------KKAKARHG--KIFVGGLTNELSDDDIKNF 158
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F ++G I + FD T + +GF +++ + + L+ P++ + ++ +KA
Sbjct: 159 FSQYGTIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIKDKEVDVKKAT 215
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGE 132
++ + ID + AA I +++ ++ KIFV GL + + + + + F G
Sbjct: 107 FNNAEAIDKVVAAGEHI--INNKKVDPKKAKARHGKIFVGGLTNELSDDDIKNFFSQYGT 164
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
I E ++ DK + KGF FI F++ + + LK P++ + ++ + A+ P
Sbjct: 165 IIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTIKDKEVDVKKATPKP 218
>gi|403309130|ref|XP_003944981.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Saimiri boliviensis boliviensis]
Length = 385
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 5/172 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F + +C ++ D T +++GF F+ + T + A+
Sbjct: 78 RKLFIGGLSFETTDESLRSHFEQWRTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 137
Query: 167 NPQRKVNNRMASCQLA-SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
KV+ R+ + A S G + + GA ++KI+V + D E+ LR +FE++
Sbjct: 138 ARPHKVDGRVVEPKRAVSRGDS----RRPGAHLTVKKKIFVGGIKEDAEEHHLRDYFEQY 193
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 194 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSMDKIVIQKYHTVNGHGCEVRKA 245
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
++KIFV G+ D + L F G+IE +++ D+ +GK +GFAF+ F + K +
Sbjct: 169 KKKIFVGGIKEDAEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSMDKIV 228
Query: 166 KNPQRKVN 173
VN
Sbjct: 229 IQKYHTVN 236
>gi|395531900|ref|XP_003768011.1| PREDICTED: RNA-binding protein Musashi homolog 2 [Sarcophilus
harrisii]
Length = 345
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 81 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 135 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 184
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 109 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 168
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 169 IHFHEINNKMVECKKA 184
>gi|414887335|tpg|DAA63349.1| TPA: hypothetical protein ZEAMMB73_769138 [Zea mays]
Length = 342
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 24/185 (12%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ W+T ++ L + FG GE+ E ++ D+ TG+A+GF F+VF A + +
Sbjct: 7 KLFVGGISWETDEDRLRAYFGRFGEVTEAVIMRDRNTGRARGFGFVVFADSGIAERVTLD 66
Query: 168 PQRKVNNRM--------------ASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ ++ RM AS +S+G GPG RKI+V + +V
Sbjct: 67 -KHMIDGRMVEAKKAVPRDDQSIASKNNSSIGSPGPGRT---------RKIFVGGLASNV 116
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
+ + R +FE+FG I + +D T + RGF Y + + KAL + G ++
Sbjct: 117 TEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVE 176
Query: 274 CQKAA 278
++A
Sbjct: 177 VKRAV 181
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RKIFV GL + T+ F G I + ++ D T + +GF FI + + A KAL
Sbjct: 105 RKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALH 164
Query: 167 NPQRKVNNRMASCQLA 182
++N +M + A
Sbjct: 165 KNFHELNGKMVEVKRA 180
>gi|297676866|ref|XP_002816343.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Pongo
abelii]
Length = 259
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 11/171 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ +++ R+ + A P +KI+V + + +EK+R +F FGEI
Sbjct: 61 EHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGEI 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279
E + D K RGF +K E +K LE+ G +++ + E
Sbjct: 110 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKIKVAQPKE 160
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L
Sbjct: 83 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 141
>gi|414590674|tpg|DAA41245.1| TPA: hypothetical protein ZEAMMB73_495774 [Zea mays]
Length = 470
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 24/184 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ W+T ++ L FG G++ E ++ D+ TG+A+GF F+VF A +
Sbjct: 7 KLFVGGISWETDEDRLREYFGRFGDVTEAVIMRDRNTGRARGFGFVVFADSGIAERVTM- 65
Query: 168 PQRKVNNRM--------------ASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ ++ RM AS +S+G GPG RKI+V + +V
Sbjct: 66 EKHMIDGRMVEAKKAVPRDDQSIASKNNSSIGSPGPGRT---------RKIFVGGLASNV 116
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
+ + R +FE+FG I + +D T + RGF Y + + KAL + G ++
Sbjct: 117 TEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVE 176
Query: 274 CQKA 277
++A
Sbjct: 177 VKRA 180
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RKIFV GL + T+ F G I + ++ D T + +GF FI + + A KAL
Sbjct: 105 RKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALH 164
Query: 167 NPQRKVNNRMASCQLA 182
++N +M + A
Sbjct: 165 KNFHELNGKMVEVKRA 180
>gi|355564301|gb|EHH20801.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Macaca
mulatta]
Length = 372
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|47939618|gb|AAH71945.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
Length = 320
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E+FG+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQFGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|358415649|ref|XP_003583166.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Bos taurus]
Length = 321
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDVAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVGELKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|296194380|ref|XP_002744925.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Callithrix jacchus]
Length = 320
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + QG +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRQGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK R FA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVTEIMTDRGSGKKRSFAFVTFDDHDTVDKIVIQKYHTVNGHNCEVRKA 180
>gi|350535755|ref|NP_001233020.1| uncharacterized protein LOC100167805 [Acyrthosiphon pisum]
gi|239788448|dbj|BAH70906.1| ACYPI008564 [Acyrthosiphon pisum]
Length = 290
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RKIFV GL +TT++ L FG GEIE + +D TG+A+GFAFIV+KT +
Sbjct: 45 RD-DDRKIFVGGLKGETTEKDLSEHFGQFGEIENINVKVDAATGRARGFAFIVYKTMEGL 103
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
AL +N++ + P A K++V + D+ + ++ +
Sbjct: 104 DNALACTNHVINDK-------KIDPK--------KAKARHVKLFVGGLSPDLTDDDIKDY 148
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F+R+ + + +D + +GF + ++ + L+ P+ + G Q+ +KAA
Sbjct: 149 FKRYAPLVNAEMPYDKVKNQRKGFCFVTFDCMQAVTEILKTPKHVINGKQVDVKKAA 205
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%)
Query: 81 LIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVI 140
L A A +++D ++ K+FV GL D T + + F + ++
Sbjct: 103 LDNALACTNHVINDKKIDPKKAKARHVKLFVGGLSPDLTDDDIKDYFKRYAPLVNAEMPY 162
Query: 141 DKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASV 184
DKV + KGF F+ F +A + LK P+ +N + + A++
Sbjct: 163 DKVKNQRKGFCFVTFDCMQAVTEILKTPKHVINGKQVDVKKAAL 206
>gi|426219507|ref|XP_004003963.1| PREDICTED: uncharacterized protein LOC101101951 [Ovis aries]
Length = 503
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 10/154 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 292 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 351
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ ++ P + + +K++V + D +E+++ +F FGE
Sbjct: 352 KEHKLDGKLID----------PKRAKALNGKEPPKKVFVGVLSPDTSEEQIKEYFGAFGE 401
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T + RGF Y E +K LE
Sbjct: 402 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 435
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV L DT++E + FG GE
Sbjct: 342 AASVDKVLELKEHKLDGKLIDPKRAKALNGKEPPKKVFVGVLSPDTSEEQIKEYFGAFGE 401
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 402 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 453
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K LE
Sbjct: 292 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 351
Query: 263 PQKMFEGHQLQCQKA 277
+ +G + ++A
Sbjct: 352 KEHKLDGKLIDPKRA 366
>gi|325179628|emb|CCA14026.1| heterogeneous nuclear ribonucleoprotein A1 putative [Albugo
laibachii Nc14]
Length = 618
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 17/187 (9%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIF+ GL ++TT E L S FG G + + ++ D ++ +++GF FI + +AL
Sbjct: 9 KIFIGGLSYETTDEKLRSYFGAFGSVTDAVVMKDPISRRSRGFGFITYADPACVDRALAQ 68
Query: 168 PQRKVNNRMASCQLA-------------SVGPTGPGV--KEQGAAAQG--ERKIYVSNVP 210
P +++R + A ++ P+GP V A A G +KI+V +
Sbjct: 69 PSHVLDSRRVEAKRAVPRADNSREVVSTTIKPSGPIVLPTLNSACASGGATKKIFVGGLH 128
Query: 211 RDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGH 270
+ + + + +F+++G++ + + F+ T KSRGF +++ + L E M +G
Sbjct: 129 YETKDAEFKKYFQKYGKVVSAEVMFNRETNKSRGFGFVIFENEQSVDLILNERDHMIDGK 188
Query: 271 QLQCQKA 277
++ ++A
Sbjct: 189 LVEVKRA 195
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 39/76 (51%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL ++T F G++ +++ ++ T K++GF F++F+ ++ L
Sbjct: 120 KKIFVGGLHYETKDAEFKKYFQKYGKVVSAEVMFNRETNKSRGFGFVIFENEQSVDLILN 179
Query: 167 NPQRKVNNRMASCQLA 182
++ ++ + A
Sbjct: 180 ERDHMIDGKLVEVKRA 195
>gi|410922315|ref|XP_003974628.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 1
[Takifugu rubripes]
Length = 348
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L D K+F+ GL W TTQE L F GE++EC ++ D VT +++GF F+ F
Sbjct: 10 LSAVDSPHDPCKMFIGGLSWQTTQEGLKEYFCKYGEVKECMVMRDPVTKRSRGFGFVTFV 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQTRHELDSKTIDPKVAF------PRRAQPKLVTRTKKIFVGGLSVNTTIE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +F++FG+++ + FD TT + RGF ++ + K E ++C+K
Sbjct: 124 DVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
>gi|355766014|gb|EHH62484.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Macaca
fascicularis]
Length = 372
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|410922321|ref|XP_003974631.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 4
[Takifugu rubripes]
Length = 341
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L D K+F+ GL W TTQE L F GE++EC ++ D VT +++GF F+ F
Sbjct: 10 LSAVDSPHDPCKMFIGGLSWQTTQEGLKEYFCKYGEVKECMVMRDPVTKRSRGFGFVTFV 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQTRHELDSKTIDPKVAF------PRRAQPKLVTRTKKIFVGGLSVNTTIE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +F++FG+++ + FD TT + RGF ++ + K E ++C+K
Sbjct: 124 DVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
>gi|345790931|ref|XP_854252.2| PREDICTED: RNA-binding protein Musashi homolog 1 [Canis lupus
familiaris]
Length = 362
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L + D K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +FE+F +++ + FD TT + RGF +++ + K E ++C+K
Sbjct: 124 DVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F ++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>gi|402908388|ref|XP_003916925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Papio anubis]
gi|402908390|ref|XP_003916926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Papio anubis]
Length = 351
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|337451|gb|AAA36575.1| hnRNP type A/B protein [Homo sapiens]
gi|228098|prf||1717217A hnRNP protein A/B
Length = 284
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNV-PRDVEKEKLRGFFERFG 226
+ +++ R+ + A P +KI+V + P +EK+R +F FG
Sbjct: 129 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPESPTEEKIREYFGEFG 177
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
EIE + D K RGF +K E +K LE
Sbjct: 178 EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212
>gi|291394515|ref|XP_002713754.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 274
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|148235301|ref|NP_001084608.1| heterogeneous nuclear ribonucleoprotein D-like-B [Xenopus laevis]
gi|82237179|sp|Q6NU14.1|HNDLB_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like-B;
Short=hnRNP D-like B; Short=hnRNP DL-B
gi|46249880|gb|AAH68788.1| MGC81335 protein [Xenopus laevis]
Length = 291
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 16/174 (9%)
Query: 91 LLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGF 150
LL H D + + K+F+ GL WDT+++ L GE+ +C + D VTG+++GF
Sbjct: 18 LLRRHKESNPDFFLIRSKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGF 77
Query: 151 AFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVS 207
F++FK + K L+ + K++ ++ + A A QG+ +K++V
Sbjct: 78 GFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA-------------KALQGKEPPKKVFVG 124
Query: 208 NVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
+ + +E+++ +F FGEIE + D T + RGF Y E +K LE
Sbjct: 125 GLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLE 178
>gi|426234977|ref|XP_004011468.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Ovis aries]
Length = 319
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|410922319|ref|XP_003974630.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 3
[Takifugu rubripes]
Length = 363
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L D K+F+ GL W TTQE L F GE++EC ++ D VT +++GF F+ F
Sbjct: 10 LSAVDSPHDPCKMFIGGLSWQTTQEGLKEYFCKYGEVKECMVMRDPVTKRSRGFGFVTFV 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQTRHELDSKTIDPKVAF------PRRAQPKLVTRTKKIFVGGLSVNTTIE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +F++FG+++ + FD TT + RGF ++ + K E ++C+K
Sbjct: 124 DVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
>gi|356501604|ref|XP_003519614.1| PREDICTED: uncharacterized protein LOC100814628 [Glycine max]
Length = 477
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 7/177 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT E L FG GE+ E ++ D+ TG+A+GF F+VF AA + + +
Sbjct: 7 KLFIGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIMD 66
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE------RKIYVSNVPRDVEKEKLRGF 221
+ ++ R + A + Q + G +KI+V +P + + + +
Sbjct: 67 -KHIIDGRTVEAKKAVPRDDQQTINRQTGSIHGSPSPGRTKKIFVGGLPSTITESDFKKY 125
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F++FG I + +D T + RGF Y + E + L + G ++ ++A
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAV 182
>gi|242347894|gb|ACS92717.1| musashi-like protein 2L [Ambystoma mexicanum]
Length = 406
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +F++FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFDQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFDQFGKVEDAMLMFDKTTNRHRGFGFVTFEIEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|158523286|sp|Q99729.2|ROAA_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A/B;
Short=hnRNP A/B; AltName: Full=APOBEC1-binding protein
1; Short=ABBP-1
Length = 332
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNV-PRDVEKEKLRGFFERFG 226
+ +++ R+ + A P +KI+V + P +EK+R +F FG
Sbjct: 130 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPESPTEEKIREYFGEFG 178
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
EIE + D K RGF +K E +K LE
Sbjct: 179 EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|4378711|gb|AAD19638.1| nucleic acid binding factor pRM10 [Rattus norvegicus]
Length = 298
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F +FGE
Sbjct: 149 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGQFGE 197
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
IE + D K RGF +K + +K LE+
Sbjct: 198 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 232
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 172 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 232 KKFHTVSG--SKCEIKVAQP 249
>gi|20373175|ref|NP_620412.1| RNA-binding protein Musashi homolog 2 isoform a [Homo sapiens]
gi|51316513|sp|Q96DH6.1|MSI2H_HUMAN RecName: Full=RNA-binding protein Musashi homolog 2;
Short=Musashi-2
gi|16306702|gb|AAH01526.1| Musashi homolog 2 (Drosophila) [Homo sapiens]
gi|123983004|gb|ABM83243.1| musashi homolog 2 (Drosophila) [synthetic construct]
gi|123997687|gb|ABM86445.1| musashi homolog 2 (Drosophila) [synthetic construct]
gi|261861224|dbj|BAI47134.1| musashi homolog 2 [synthetic construct]
gi|380784487|gb|AFE64119.1| RNA-binding protein Musashi homolog 2 isoform a [Macaca mulatta]
gi|383415747|gb|AFH31087.1| RNA-binding protein Musashi homolog 2 isoform a [Macaca mulatta]
gi|384941194|gb|AFI34202.1| RNA-binding protein Musashi homolog 2 isoform a [Macaca mulatta]
gi|392583801|dbj|BAM24698.2| musashi homolog 2 [Sus scrofa]
gi|410219648|gb|JAA07043.1| musashi homolog 2 [Pan troglodytes]
gi|410258766|gb|JAA17350.1| musashi homolog 2 [Pan troglodytes]
gi|410287210|gb|JAA22205.1| musashi homolog 2 [Pan troglodytes]
gi|410335871|gb|JAA36882.1| musashi homolog 2 [Pan troglodytes]
gi|417399031|gb|JAA46548.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1 [Desmodus
rotundus]
Length = 328
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|110758129|ref|XP_392465.3| PREDICTED: RNA-binding protein squid-like isoform 1 [Apis
mellifera]
Length = 358
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ RK+FV GL W+TT + L FG G+IE + D TG+++GFAFIVF ++ K
Sbjct: 51 LNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDK 110
Query: 164 ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223
+ +NN+ V P ++ A G KI+V + ++ + ++ FF
Sbjct: 111 IMAAGDHVINNK-------KVDP------KKAKARHG--KIFVGGLSTELSDDDIKNFFS 155
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+FG I + FD T + +GF +++ + + L+ P++ G ++ +KA
Sbjct: 156 QFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKAT 210
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
++K + +D I AA DH++ D KIFV GL + + + + + F
Sbjct: 102 FAKAESLDKIMAAG-------DHVINNKKVDPKKAKARHGKIFVGGLSTELSDDDIKNFF 154
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G I E ++ DK + KGF FI F++ + + LK P++ +N + + A+ P
Sbjct: 155 SQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKATPKP 213
>gi|550458|gb|AAA68014.1| ribonucleoprotein [Gallus gallus]
gi|1095499|prf||2109229A RNA-binding protein
Length = 285
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF F +FK + K L+
Sbjct: 74 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFRLFKEPGSVEKVLEQ 133
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 134 KEHRLDGRLIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGE 182
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
IE + D T K RGF +K + +K LE+
Sbjct: 183 IEAIELPMDPKTNKRRGFVFISFKEEDPVKKVLEK 217
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D T K +GF FI FK K L
Sbjct: 157 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFISFKEEDPVKKVL- 215
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 216 --EKKFHNVSGSKCEIKVAQP 234
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + D K+ L+ +F +FGE+ I D TG+SRGF ++K K LE+
Sbjct: 74 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFRLFKEPGSVEKVLEQ 133
Query: 263 PQKMFEGHQLQCQKA 277
+ +G + +KA
Sbjct: 134 KEHRLDGRLIDPKKA 148
>gi|296477081|tpg|DAA19196.1| TPA: musashi 2-like [Bos taurus]
Length = 324
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 78 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 131
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 132 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 181
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 106 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 165
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 166 IHFHEINNKMVECKKA 181
>gi|301759651|ref|XP_002915684.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Ailuropoda
melanoleuca]
Length = 324
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 78 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 131
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 132 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 181
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 106 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 165
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 166 IHFHEINNKMVECKKA 181
>gi|1814274|gb|AAC50956.1| ABBP-1 [Homo sapiens]
Length = 331
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNV-PRDVEKEKLRGFFERFG 226
+ +++ R+ + A P +KI+V + P +EK+R +F FG
Sbjct: 129 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPESPTEEKIREYFGEFG 177
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
EIE + D K RGF +K E +K LE
Sbjct: 178 EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212
>gi|15982560|dbj|BAB69484.1| RNA-binding protein Musashi2-S [Mus musculus]
gi|26340376|dbj|BAC33851.1| unnamed protein product [Mus musculus]
gi|26340420|dbj|BAC33873.1| unnamed protein product [Mus musculus]
gi|85057100|gb|AAI11810.1| Msi2h protein [Mus musculus]
Length = 328
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|255582445|ref|XP_002532010.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223528341|gb|EEF30383.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 484
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 8/177 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT +E L FG GE+ E ++ D+ TG+A+GF F+VF A + +
Sbjct: 7 KLFIGGISWDTNEERLKEYFGSFGEVVEAVIMKDRTTGRARGFGFVVFADAAVAERVIM- 65
Query: 168 PQRKVNNRMASCQLA------SVGPTGPGVKEQGAAAQGE-RKIYVSNVPRDVEKEKLRG 220
+ ++ RM + A ++ G G+ G RKI+V + V + R
Sbjct: 66 EKHNIDGRMVEAKKAVPRDDQNILNRSTGSSIHGSPGPGRTRKIFVGGLASTVTETDFRK 125
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FE++G I + +D T + RGF Y + E K L + G ++ ++A
Sbjct: 126 YFEQYGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLMKTFHELNGKMVEVKRA 182
>gi|291410921|ref|XP_002721736.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 269
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
R++F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RRLFIGGLSFETTNESLRSHFEQWGTLTDCMVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|119614917|gb|EAW94511.1| musashi homolog 2 (Drosophila), isoform CRA_f [Homo sapiens]
Length = 328
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|402908392|ref|XP_003916927.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
3 [Papio anubis]
Length = 343
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 6 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 65
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 66 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 121
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 122 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 172
>gi|356566592|ref|XP_003551514.1| PREDICTED: uncharacterized protein LOC100794390 [Glycine max]
Length = 479
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT +E L FG GE+ E ++ D+VTG+A+GF F+VF A + + +
Sbjct: 7 KLFIGGISWDTDEERLKDYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMD 66
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE------RKIYVSNVPRDVEKEKLRGF 221
+ ++ R + A + Q +A +KI+V +P + + + +
Sbjct: 67 -KHIIDGRTVEAKKAVPRDDQQNINRQSGSAHASPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F++FG I + +D T + RGF Y + E + L + G ++ ++A
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAV 182
>gi|51535080|dbj|BAD37669.1| putative RRM-containing protein [Oryza sativa Japonica Group]
gi|51535381|dbj|BAD37252.1| putative RRM-containing protein [Oryza sativa Japonica Group]
gi|125596523|gb|EAZ36303.1| hypothetical protein OsJ_20624 [Oryza sativa Japonica Group]
gi|215765073|dbj|BAG86770.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T E L F GEI E ++ D++TG++KG+ F+ F+ +AA
Sbjct: 35 DTTLTKVFVGGLAWETPSEGLRRHFEQYGEILEAVVIADRLTGRSKGYGFVTFREAEAAR 94
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQG 200
+A+++P + R A+C +AS+GP P +G A+ G
Sbjct: 95 RAVQDPNPMIAGRRANCNIASLGPPRPAQPPRGRASPG 132
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + E LR FE++GEI + D TG+S+G+ ++ E AR+A+++
Sbjct: 40 KVFVGGLAWETPSEGLRRHFEQYGEILEAVVIADRLTGRSKGYGFVTFREAEAARRAVQD 99
Query: 263 PQKMFEGHQLQCQKAAEGKNRTS 285
P M G + C A+ G R +
Sbjct: 100 PNPMIAGRRANCNIASLGPPRPA 122
>gi|402860565|ref|XP_003894696.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Papio anubis]
Length = 321
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RKIF+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKIFIGGLSFETTDESLRSHFEQRGMLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
RKV+ R + A ++ A +K +V + D E+ LR +FE++G
Sbjct: 74 ARPRKVDGRTVKPKRAVSREDS----QRSGAHLTVKKKFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK R FA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRDFAFITFDNHDSVDKTVIQKYHTVNGHNYEARKA 180
>gi|344266093|ref|XP_003405115.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Loxodonta africana]
Length = 370
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|332206587|ref|XP_003252377.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Nomascus leucogenys]
Length = 321
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 15 RKLFIGGLSFETTNESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 74
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LRG+FE++G
Sbjct: 75 ARPHKVDGRVVEPKRAISRED----SQRPDAHLTVKKIFVGGIKEDTEEHHLRGYFEQYG 130
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 131 KIEVIEIMTDQGSGKKRGFAFLTFDDHDSVDKIIIQKYHTVNGHICEVRKA 181
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA 160
D ++ +KIFV G+ DT + L F G+IE +++ D+ +GK +GFAF+ F +
Sbjct: 100 DAHLTVKKIFVGGIKEDTEEHHLRGYFEQYGKIEVIEIMTDQGSGKKRGFAFLTFDDHDS 159
Query: 161 AVKALKNPQRKVNNRMASCQLA 182
K + VN + + A
Sbjct: 160 VDKIIIQKYHTVNGHICEVRKA 181
>gi|351704017|gb|EHB06936.1| Heterogeneous nuclear ribonucleoprotein A/B, partial
[Heterocephalus glaber]
Length = 261
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 11/170 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F FGE
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGDFGE 109
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + D K RGF +K + +K LE+ G + + + A
Sbjct: 110 IEAIELPMDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTISGSKCEIKVA 159
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK K L+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGDFGEIEAIELPMDPKLNKRRGFVFITFKEEDPVKKVLE 143
Query: 167 NPQRKVNNRMASCQLASVGP 186
++ + C++ P
Sbjct: 144 KKFHTISG--SKCEIKVAQP 161
>gi|75517570|gb|AAI03708.1| HNRPA1 protein [Homo sapiens]
Length = 267
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|426254471|ref|XP_004020902.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T ++GF F+ + T + V A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKCSRGFGFVTYATVEEVVAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|14043070|ref|NP_112420.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Homo sapiens]
gi|397472158|ref|XP_003807623.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Pan
paniscus]
gi|288558857|sp|P09651.5|ROA1_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand RNA-binding
protein; AltName: Full=hnRNP core protein A1
gi|119617168|gb|EAW96762.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_b [Homo
sapiens]
gi|119617174|gb|EAW96768.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_b [Homo
sapiens]
gi|380812310|gb|AFE78029.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Macaca
mulatta]
Length = 372
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|335347347|ref|NP_001229438.1| heterogeneous nuclear ribonucleoprotein A1 [Equus caballus]
gi|410964601|ref|XP_003988842.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Felis catus]
gi|426224339|ref|XP_004006329.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
3 [Ovis aries]
gi|74222222|dbj|BAE26919.1| unnamed protein product [Mus musculus]
gi|149031878|gb|EDL86790.1| rCG50547, isoform CRA_b [Rattus norvegicus]
gi|149031880|gb|EDL86792.1| rCG50547, isoform CRA_b [Rattus norvegicus]
Length = 373
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|85060507|ref|NP_001034218.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Mus musculus]
gi|59808855|gb|AAH89340.1| Heterogeneous nuclear ribonucleoprotein A1 [Mus musculus]
gi|62531241|gb|AAH92395.1| Heterogeneous nuclear ribonucleoprotein A1 [Mus musculus]
gi|74144667|dbj|BAE27318.1| unnamed protein product [Mus musculus]
gi|74185136|dbj|BAE39169.1| unnamed protein product [Mus musculus]
gi|74219989|dbj|BAE40574.1| unnamed protein product [Mus musculus]
Length = 373
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|38328245|gb|AAH62235.1| Hnrpa1 protein [Rattus norvegicus]
Length = 313
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|426224337|ref|XP_004006328.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Ovis aries]
Length = 310
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|395540858|ref|XP_003772367.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Sarcophilus
harrisii]
Length = 372
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|115486383|ref|NP_001068335.1| Os11g0637700 [Oryza sativa Japonica Group]
gi|108864610|gb|ABA94921.2| RNA-binding protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113645557|dbj|BAF28698.1| Os11g0637700 [Oryza sativa Japonica Group]
gi|215697828|dbj|BAG92021.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740693|dbj|BAG97349.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 467
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 7/176 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT ++ L F GE+ E ++ D+ TG+A+GF FIVF A + +
Sbjct: 7 KLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVIME 66
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE------RKIYVSNVPRDVEKEKLRGF 221
+ ++ RM + A + + G +A G +KI+V + V + R +
Sbjct: 67 -KHMIDGRMVEAKKAVPRDDQHALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRKY 125
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE+FG I + +D T + RGF Y + + KAL + G ++ ++A
Sbjct: 126 FEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALFKTFHELNGKMVEVKRA 181
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL T+ F G I + ++ D T + +GF FI + + A KAL
Sbjct: 106 KKIFVGGLASTVTEADFRKYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALF 165
Query: 167 NPQRKVNNRMASCQLA 182
++N +M + A
Sbjct: 166 KTFHELNGKMVEVKRA 181
>gi|344266091|ref|XP_003405114.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Loxodonta africana]
Length = 320
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|321469931|gb|EFX80909.1| hypothetical protein DAPPUDRAFT_224415 [Daphnia pulex]
Length = 464
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 4/182 (2%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
E D Q K+F+ GL W+TT+++LL F GE+ +C ++ + TG+++GF FI F
Sbjct: 11 EGGDNSNEQGKMFIGGLSWETTRDNLLRYFSQYGEVVDCVVMKNPETGRSRGFGFITFAD 70
Query: 158 RKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVK--EQGAAAQGERKIYVSNVPRDVEK 215
L+N ++NR + + P V+ + K+++ +P ++ +
Sbjct: 71 PNNVGLVLQNTPHILDNRTIDPKPCN--PRAEMVRAPRRSMGTGNGYKVFLGGLPSNLTE 128
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
LR FF ++G++ I +D KSRGF +++ E + E G Q++ +
Sbjct: 129 TDLRNFFSQYGKVSEVVIMYDQEKKKSRGFGFLTFESEESVDRCTGEHYVSINGKQVEIK 188
Query: 276 KA 277
KA
Sbjct: 189 KA 190
>gi|380792669|gb|AFE68210.1| heterogeneous nuclear ribonucleoprotein A1 isoform a, partial
[Macaca mulatta]
Length = 317
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|357122209|ref|XP_003562808.1| PREDICTED: uncharacterized protein LOC100836006 [Brachypodium
distachyon]
Length = 472
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 25/186 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ W+T +E L FG GE+ E ++ D+ TG+A+GF FIVF A + +
Sbjct: 7 KLFVGGISWETDEERLREYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEPGVAERVTMD 66
Query: 168 PQRKVNNRMASCQLA---------------SVGPTGPGVKEQGAAAQGERKIYVSNVPRD 212
+ ++ RM + A S+G GP V+ RKI+V + +
Sbjct: 67 -KHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP-VR--------TRKIFVGGLASN 116
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
V + + R +FE+FG I + +D T + RGF Y + + KAL + G +
Sbjct: 117 VTEVEFRRYFEQFGMITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMV 176
Query: 273 QCQKAA 278
+ ++A
Sbjct: 177 EVKRAV 182
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
V RKIFV GL + T+ F G I + ++ D T + +GF FI + + A K
Sbjct: 103 VRTRKIFVGGLASNVTEVEFRRYFEQFGMITDVVVMYDHNTQRPRGFGFITYDSEDAVDK 162
Query: 164 ALKNPQRKVNNRMASCQLA 182
AL ++N +M + A
Sbjct: 163 ALHKNFHELNGKMVEVKRA 181
>gi|294460252|gb|ADE75708.1| unknown [Picea sitchensis]
Length = 396
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 117/275 (42%), Gaps = 29/275 (10%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D KIF+ G+ WDT+++ L FG G++ + ++ D+ TG+A+GF F+VF A
Sbjct: 2 DSDHGKIFIGGISWDTSEDRLKDYFGNYGQVVDVVIMKDRTTGRARGFGFVVFGDPSVAD 61
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGA------AAQGERKIYVSNVPRDVEKE 216
+ ++ + ++ R + P ++Q A +KI+V + V ++
Sbjct: 62 RVIQE-KHTIDGRAVEAKRVV-----PRDEQQNVQRTSNMAGPRTKKIFVGGLAPTVTED 115
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
R +FE+FG I + +D TT + RGF Y + + K L Q+ F HQL+ +K
Sbjct: 116 DFRKYFEQFGNITDVVVMYDHTTQRHRGFGFITYDSEDAVDKVL---QQTF--HQLK-EK 169
Query: 277 AAEGKNRTSSNSSSSNNQAQM-MIQKQQQPMLQGQQQGQGNEQEQVLAAMA--AAQNLAL 333
E K + S N + P +QG G G A A
Sbjct: 170 TVEVKRAIPKDMSPGNTRGSAGRGASYGAPYMQG---GYGPTPVGAYGARPPIAGTGYPP 226
Query: 334 FGQHPGMHPLYGGFLVNPGLINPMVAGALHQGAIP 368
+G PG P G+ PG M G GA P
Sbjct: 227 YGAAPGYGPT--GYGSTPGYGTSMNGG---YGATP 256
>gi|440898654|gb|ELR50102.1| Heterogeneous nuclear ribonucleoprotein D-like protein, partial
[Bos grunniens mutus]
Length = 356
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 85 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 144
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 145 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 192
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 193 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 228
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 135 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 194
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 195 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 246
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 81 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 140
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 141 VLELKEHKLDGKLIDPKRA 159
>gi|383851135|ref|XP_003701095.1| PREDICTED: RNA-binding protein squid-like isoform 2 [Megachile
rotundata]
Length = 362
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ RK+FV GL W+TT + L FG G+IE + D TG+++GFAFIVF ++ K
Sbjct: 51 LNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDK 110
Query: 164 ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223
+ +N + V P ++ A G KI+V + ++ E ++ FF
Sbjct: 111 IMSANDHIINGK-------KVDP------KKAKARHG--KIFVGGLSTELSDEDIKNFFS 155
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+FG I + FD T + +GF +++ + + L+ P++ G ++ +KA
Sbjct: 156 QFGTIVDVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKAT 210
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + KI +DHI+ D KIFV GL + + E + + F G I + +
Sbjct: 105 AESLDKIMSANDHIINGKKVDPKKAKARHGKIFVGGLSTELSDEDIKNFFSQFGTIVDVE 164
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F++ + + LK P++ +N + + A+ P
Sbjct: 165 MPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKATPKP 213
>gi|401401445|ref|XP_003881013.1| hypothetical protein NCLIV_040540 [Neospora caninum Liverpool]
gi|325115425|emb|CBZ50980.1| hypothetical protein NCLIV_040540 [Neospora caninum Liverpool]
Length = 434
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
+D++V RK+FV GL TT +SL + F G++ + +++ DK TG+++GF FI F T +
Sbjct: 114 SDKEVQMRKLFVGGLSRSTTTDSLRTYFQQYGDVADSEVLFDKFTGRSRGFGFITFTTPE 173
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGER-KIYVSNVPRDVEKEKL 218
V + + + V+ + A P + G+ A + +++V + DV E L
Sbjct: 174 -PVSRVADMRHTVDGTQVEVRRAI--PREEAREHGGSGADRDAGRLFVGGISDDVNDESL 230
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
R +F +GEI++ + D + RGF +++ + A KA+
Sbjct: 231 RAYFRHYGEIQSANVMVDRQNNRPRGFGFVIFRNPDDAEKAI 272
>gi|426341485|ref|XP_004036065.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Gorilla gorilla gorilla]
Length = 320
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGMLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKA 180
>gi|291394513|ref|XP_002713753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 320
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
E++G+IE I D +GK RGFA + + K + + GH + +KA +
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Query: 283 RTSSNSS 289
S++S+
Sbjct: 186 MASASST 192
>gi|417398472|gb|JAA46269.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1 [Desmodus
rotundus]
Length = 293
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|444725879|gb|ELW66430.1| Heterogeneous nuclear ribonucleoprotein A1 [Tupaia chinensis]
Length = 191
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 8/172 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL ++TT ESL S F G + +C ++ D T ++GF F+ + T + +K
Sbjct: 23 KLFIRGLSFETTDESLRSHFEQWGTLTDCMVMRDPNTKHSRGFGFVTYATVEEVDATMKA 82
Query: 168 PQRKVNNRMASCQ--LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+V+ R+ + ++ PG A +KI+V + D E+ LR +FE++
Sbjct: 83 RPHEVDGRVVEPKRVISREDSQRPG------AHLTMKKIFVGGIKEDTEEHHLRDYFEQY 136
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G+IE I D +GK RGFA +Y + K + + GH + +KA
Sbjct: 137 GKIEVIKIMTDRGSGKKRGFAFVIYDDHDSVDKIVIQKYHTVNGHNCEVRKA 188
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ +KIFV G+ DT + L F G+IE K++ D+ +GK +GFAF+++ + K
Sbjct: 110 LTMKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIKIMTDRGSGKKRGFAFVIYDDHDSVDK 169
Query: 164 ALKNPQRKVNNRMASCQL 181
+ VN +C++
Sbjct: 170 IVIQKYHTVNGH--NCEV 185
>gi|395505200|ref|XP_003756932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Sarcophilus
harrisii]
Length = 278
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKESASVDKVLDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ +++ R+ + A P +KI+V + + ++K+R +F FGEI
Sbjct: 61 EHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEDKIREYFGDFGEI 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
E+ + D T K RGF +K + +K LE+
Sbjct: 110 ESIELPMDPKTNKRRGFVFITFKEEDPVKKILEK 143
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T++ + FG GEIE +L +D T K +GF FI FK K L
Sbjct: 83 KKIFVGGLNPEATEDKIREYFGDFGEIESIELPMDPKTNKRRGFVFITFKEEDPVKKIL- 141
Query: 167 NPQRKVNNRMAS-CQLASVGP 186
++K +N S C++ P
Sbjct: 142 --EKKFHNVGGSKCEIKVAQP 160
>gi|351695029|gb|EHA97947.1| Heterogeneous nuclear ribonucleoprotein D-like protein, partial
[Heterocephalus glaber]
Length = 340
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 69 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 128
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 129 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 176
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 177 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 212
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 119 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 178
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 179 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 230
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 65 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 124
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 125 VLELKEHKLDGKLIDPKRA 143
>gi|90075098|dbj|BAE87229.1| unnamed protein product [Macaca fascicularis]
Length = 304
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|341889790|gb|EGT45725.1| hypothetical protein CAEBREN_10423 [Caenorhabditis brenneri]
Length = 311
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TT E+L FG GE+ EC ++ D T +A+GF FI F + K L
Sbjct: 35 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLHA 94
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A T Q +K+++ + E ++ +FE +G+
Sbjct: 95 RDHELDGKKIDPKVAFPKRT------QAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGK 148
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + +D T + RGF + + E A K E G ++C+KA
Sbjct: 149 VEDAMLMYDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKA 198
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+F+ GL +T E + F G++E+ L+ DK T + +GF F+ F + + A K +
Sbjct: 123 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMYDKATQRHRGFGFVTFDSDEVADKVCE 182
Query: 167 NPQRKVNNRMASCQLA 182
++N +M C+ A
Sbjct: 183 IHFHEINGKMVECKKA 198
>gi|390465683|ref|XP_003733453.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Callithrix jacchus]
Length = 320
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLIDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVTEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|326525423|dbj|BAJ88758.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 471
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 25/186 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ W+T ++ L FG GE+ E ++ D+ TG+A+GF FIVF A + +
Sbjct: 7 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 66
Query: 168 PQRKVNNRMASCQLA---------------SVGPTGPGVKEQGAAAQGERKIYVSNVPRD 212
+ ++ RM + A S+G GP V+ RKI+V + +
Sbjct: 67 -KHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP-VR--------TRKIFVGGLASN 116
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
V + + R +FE+FG I + +D T + RGF Y + + KAL + G +
Sbjct: 117 VTEVEFRRYFEQFGMITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMV 176
Query: 273 QCQKAA 278
+ ++A
Sbjct: 177 EVKRAV 182
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
V RKIFV GL + T+ F G I + ++ D T + +GF FI + + A K
Sbjct: 103 VRTRKIFVGGLASNVTEVEFRRYFEQFGMITDVVVMYDHNTQRPRGFGFITYDSEDAVDK 162
Query: 164 ALKNPQRKVNNRMASCQLA 182
AL ++N +M + A
Sbjct: 163 ALHKNFHELNGKMVEVKRA 181
>gi|410922317|ref|XP_003974629.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 2
[Takifugu rubripes]
Length = 329
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L D K+F+ GL W TTQE L F GE++EC ++ D VT +++GF F+ F
Sbjct: 10 LSAVDSPHDPCKMFIGGLSWQTTQEGLKEYFCKYGEVKECMVMRDPVTKRSRGFGFVTFV 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQTRHELDSKTIDPKVAFP------RRAQPKLVTRTKKIFVGGLSVNTTIE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +F++FG+++ + FD TT + RGF ++ + K E ++C+K
Sbjct: 124 DVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
>gi|119614918|gb|EAW94512.1| musashi homolog 2 (Drosophila), isoform CRA_g [Homo sapiens]
Length = 255
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A P + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|25121993|ref|NP_733839.1| RNA-binding protein Musashi homolog 2 isoform b [Homo sapiens]
gi|332848594|ref|XP_003315679.1| PREDICTED: uncharacterized protein LOC748578 [Pan troglodytes]
gi|426347417|ref|XP_004041349.1| PREDICTED: RNA-binding protein Musashi homolog 2 [Gorilla gorilla
gorilla]
gi|21752839|dbj|BAC04244.1| unnamed protein product [Homo sapiens]
gi|119614916|gb|EAW94510.1| musashi homolog 2 (Drosophila), isoform CRA_e [Homo sapiens]
Length = 251
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 78 PHHELDSKTIDPKVAF------PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 131
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 132 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 181
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 106 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 165
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 166 IHFHEINNKMVECKKA 181
>gi|351706129|gb|EHB09048.1| Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3
[Heterocephalus glaber]
Length = 313
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 13/189 (6%)
Query: 102 RDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
RD S RK IF+ L Q+ L F G I CK+V+D+ G++KG+ F+ F+
Sbjct: 91 RDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDE-NGQSKGYGFVHFE 149
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE-RKIYVSNVPRDVEK 215
+ A +A++ K+NN + ++ VG P + + A + + +Y+ N P + +
Sbjct: 150 KEECAERAIE----KINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDN 205
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQC 274
EKL+ F FGEI++ + D + GKS+GF + + A A++ K EG L C
Sbjct: 206 EKLKEMFNEFGEIKSACVMKD-SEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYC 264
Query: 275 QKAAEGKNR 283
+A + R
Sbjct: 265 ARAQRKEER 273
>gi|355687288|gb|EHH25872.1| Heterogeneous nuclear ribonucleoprotein D-like protein, partial
[Macaca mulatta]
Length = 309
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 38 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 97
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 98 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 145
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 146 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 181
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 88 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 147
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 148 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 199
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 34 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 93
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 94 VLELKEHKLDGKLIDPKRA 112
>gi|355568556|gb|EHH24837.1| hypothetical protein EGK_08563, partial [Macaca mulatta]
gi|355754027|gb|EHH57992.1| hypothetical protein EGM_07749, partial [Macaca fascicularis]
Length = 308
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 2 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 61
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 62 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 115
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 116 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 165
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 90 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 149
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 150 IHFHEINNKMVECKKA 165
>gi|291410919|ref|XP_002721735.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 320
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
R++F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RRLFIGGLSFETTNESLRSHFEQWGTLTDCMVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
E++G+IE I D +GK RGFA + + K + + GH + +KA +
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Query: 283 RTSSNSS 289
S++S+
Sbjct: 186 MASASST 192
>gi|426341487|ref|XP_004036066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Gorilla gorilla gorilla]
Length = 320
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGMLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + +GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRDSGKKRGFAFVTFDDHDSLDKIVIQKYHTVKGHNCEVRKA 180
>gi|148671986|gb|EDL03933.1| mCG15678, isoform CRA_d [Mus musculus]
Length = 326
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 20 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 79
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 80 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 131
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 132 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 186
>gi|111306451|gb|AAI21134.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
Length = 320
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|74220381|dbj|BAE31416.1| unnamed protein product [Mus musculus]
Length = 320
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|268564135|ref|XP_002647098.1| C. briggsae CBR-MSI-1 protein [Caenorhabditis briggsae]
Length = 318
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TT E+L FG GE+ EC ++ D T +A+GF FI F + K L
Sbjct: 43 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVEPSSVDKVLNA 102
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A T Q +K+++ + E ++ +FE +G+
Sbjct: 103 RDHELDGKKIDPKVAFPKRT------QAKLVTKTKKVFIGGLSATSTLEDMKQYFESYGK 156
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + +D T + RGF + + E A K E G ++C+KA
Sbjct: 157 VEDAMLMYDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKA 206
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+F+ GL +T E + F G++E+ L+ DK T + +GF F+ F + + A K +
Sbjct: 131 KKVFIGGLSATSTLEDMKQYFESYGKVEDAMLMYDKATQRHRGFGFVTFDSDEVADKVCE 190
Query: 167 NPQRKVNNRMASCQLA 182
++N +M C+ A
Sbjct: 191 IHFHEINGKMVECKKA 206
>gi|148671983|gb|EDL03930.1| mCG15678, isoform CRA_a [Mus musculus]
Length = 371
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 12 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 71
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 72 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 127
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 128 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 178
>gi|157831273|pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|403271005|ref|XP_003927441.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Saimiri
boliviensis boliviensis]
Length = 320
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|403255345|ref|XP_003920400.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Saimiri
boliviensis boliviensis]
Length = 320
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSMDKIVIQKYHTVNGHNCEVRKA 180
>gi|291384354|ref|XP_002708769.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 274
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++ T ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFEMTDESLRSHFEQWGMLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVLREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|4504445|ref|NP_002127.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Homo sapiens]
gi|6754220|ref|NP_034577.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Mus musculus]
gi|114052384|ref|NP_001039376.1| heterogeneous nuclear ribonucleoprotein A1 [Bos taurus]
gi|116175259|ref|NP_001070686.1| heterogeneous nuclear ribonucleoprotein A1 [Sus scrofa]
gi|148529006|ref|NP_001091892.1| heterogeneous nuclear ribonucleoprotein A1-like 1 [Pan troglodytes]
gi|308193354|ref|NP_001184040.1| heterogeneous nuclear ribonucleoprotein A1 [Pan troglodytes]
gi|73996139|ref|XP_848386.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Canis lupus familiaris]
gi|332864208|ref|XP_003318234.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Pan troglodytes]
gi|354503661|ref|XP_003513899.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Cricetulus
griseus]
gi|402886231|ref|XP_003906538.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Papio
anubis]
gi|410058477|ref|XP_003954396.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Pan troglodytes]
gi|410964599|ref|XP_003988841.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Felis catus]
gi|426224335|ref|XP_004006327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Ovis aries]
gi|1350822|sp|P49312.2|ROA1_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=HDP-1; AltName:
Full=Helix-destabilizing protein; AltName:
Full=Single-strand-binding protein; AltName:
Full=Topoisomerase-inhibitor suppressed; AltName:
Full=hnRNP core protein A1
gi|156637352|sp|A5A6H4.1|ROA1_PANTR RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand-binding protein;
AltName: Full=hnRNP core protein A1
gi|172046785|sp|P09867.2|ROA1_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand RNA-binding
protein; AltName: Full=Unwinding protein 1; Short=UP1;
AltName: Full=hnRNP core protein A1
gi|70819|pir||DDRT helix-destabilizing protein - rat
gi|87651|pir||S04617 heterogeneous ribonuclear particle protein A1 - human
gi|193324|gb|AAA37633.1| RNA binding protein [Mus musculus]
gi|296650|emb|CAA31191.1| hnrnp a1 protein [Homo sapiens]
gi|496898|emb|CAA56072.1| hnRNPcore protein A1 [Homo sapiens]
gi|1711242|dbj|BAA13162.1| TIS [Mus musculus]
gi|12803103|gb|AAH02355.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|12841583|dbj|BAB25267.1| unnamed protein product [Mus musculus]
gi|15082486|gb|AAH12158.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|16307046|gb|AAH09600.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|21707258|gb|AAH33714.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|26353286|dbj|BAC40273.1| unnamed protein product [Mus musculus]
gi|47125420|gb|AAH70315.1| HNRPA1 protein [Homo sapiens]
gi|49257442|gb|AAH73162.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|49522847|gb|AAH74502.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|51490837|emb|CAH18571.1| heterogeneous nuclear ribonucleoprotein A1 [Pan troglodytes]
gi|51873929|gb|AAH80675.1| Heterogeneous nuclear ribonucleoprotein A1 [Mus musculus]
gi|53236995|gb|AAH83136.1| Heterogeneous nuclear ribonucleoprotein A1 [Mus musculus]
gi|55930978|gb|AAH52296.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|56971262|gb|AAH88150.1| Hnrpa1 protein [Rattus norvegicus]
gi|67968511|dbj|BAE00617.1| unnamed protein product [Macaca fascicularis]
gi|74180018|dbj|BAE36552.1| unnamed protein product [Mus musculus]
gi|74183107|dbj|BAE22518.1| unnamed protein product [Mus musculus]
gi|74184983|dbj|BAE39104.1| unnamed protein product [Mus musculus]
gi|74189079|dbj|BAE39302.1| unnamed protein product [Mus musculus]
gi|74204144|dbj|BAE39837.1| unnamed protein product [Mus musculus]
gi|74204330|dbj|BAE39920.1| unnamed protein product [Mus musculus]
gi|74204859|dbj|BAE20929.1| unnamed protein product [Mus musculus]
gi|74214152|dbj|BAE40333.1| unnamed protein product [Mus musculus]
gi|74214339|dbj|BAE40409.1| unnamed protein product [Mus musculus]
gi|86823844|gb|AAI05414.1| Heterogeneous nuclear ribonucleoprotein A1 [Bos taurus]
gi|115371763|gb|ABI96206.1| ROA1 [Sus scrofa]
gi|119617167|gb|EAW96761.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_a [Homo
sapiens]
gi|119617175|gb|EAW96769.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_a [Homo
sapiens]
gi|119617176|gb|EAW96770.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_a [Homo
sapiens]
gi|146741382|dbj|BAF62347.1| heterogeneous nuclear ribonucleoprotein A1, transcript variant 1
[Pan troglodytes verus]
gi|148671984|gb|EDL03931.1| mCG15678, isoform CRA_b [Mus musculus]
gi|149031879|gb|EDL86791.1| rCG50547, isoform CRA_c [Rattus norvegicus]
gi|149031881|gb|EDL86793.1| rCG50547, isoform CRA_c [Rattus norvegicus]
gi|158255662|dbj|BAF83802.1| unnamed protein product [Homo sapiens]
gi|208966454|dbj|BAG73241.1| heterogeneous nuclear ribonucleoprotein A1 [synthetic construct]
gi|296487907|tpg|DAA30020.1| TPA: heterogeneous nuclear ribonucleoprotein A1 [Bos taurus]
gi|335772612|gb|AEH58124.1| heterogeneous nuclear ribonucleoprotein A-like protein [Equus
caballus]
gi|380812306|gb|AFE78027.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Macaca
mulatta]
gi|380812308|gb|AFE78028.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Macaca
mulatta]
Length = 320
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|297850158|ref|XP_002892960.1| hypothetical protein ARALYDRAFT_335030 [Arabidopsis lyrata subsp.
lyrata]
gi|297338802|gb|EFH69219.1| hypothetical protein ARALYDRAFT_335030 [Arabidopsis lyrata subsp.
lyrata]
Length = 354
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 86/157 (54%), Gaps = 4/157 (2%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ W+TT+E+ + FG GE+ + ++ D++TG +GF F+ F A K L+
Sbjct: 60 KLFVGGVSWETTEETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 119
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++R L P G + A ++ RKI+V +P +E+++L+ +F +G+
Sbjct: 120 -EHVIDDR--KVDLKRTVPRGDRDTDIKAVSK-TRKIFVGGLPPLLEEDELKNYFCVYGD 175
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264
I I +D TG+SRGF ++T + + + +
Sbjct: 176 IIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDAK 212
>gi|157834095|pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 12 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 71
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 72 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 127
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 128 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 178
>gi|88682985|gb|AAI05387.1| HNRPDL protein [Bos taurus]
Length = 336
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 65 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 124
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 125 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 172
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 173 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 208
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 115 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 174
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 175 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 226
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 61 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 120
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 121 VLELKEHKLDGKLIDPKRA 139
>gi|357156001|ref|XP_003577309.1| PREDICTED: uncharacterized protein LOC100846541 [Brachypodium
distachyon]
Length = 463
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 7/176 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT ++ L F GE+ E ++ D+ TG+A+GF FIVF A + +
Sbjct: 7 KLFIGGISWDTNEDRLREYFEKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVIME 66
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE------RKIYVSNVPRDVEKEKLRGF 221
+ ++ RM + A + + G + G +KI+V + V + R +
Sbjct: 67 -KHMIDGRMVEAKKAVPRDDQQALSKSGGSTHGSPGPSRTKKIFVGGLASTVNEADFRTY 125
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE+FG I + +D T + RGF Y + E KAL + G ++ ++A
Sbjct: 126 FEQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKALFKTFHELNGKMVEVKRA 181
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + + F G I + ++ D T + +GF FI + + +A KAL
Sbjct: 106 KKIFVGGLASTVNEADFRTYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKALF 165
Query: 167 NPQRKVNNRMASCQLA 182
++N +M + A
Sbjct: 166 KTFHELNGKMVEVKRA 181
>gi|332265255|ref|XP_003281643.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Nomascus
leucogenys]
Length = 261
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ +++ R+ + A P +KI+V + + +EK+R +F FGEI
Sbjct: 61 EHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGEI 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E + D K RGF +K E +K LE+ G + + + A
Sbjct: 110 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVA 158
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 83 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 142
Query: 167 NPQRKVNNRMASCQLASVGP 186
++ + C++ P
Sbjct: 143 KKFHTISG--SKCEIKVAQP 160
>gi|326494758|dbj|BAJ94498.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 494
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 25/186 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ W+T ++ L FG GE+ E ++ D+ TG+A+GF FIVF A + +
Sbjct: 30 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 89
Query: 168 PQRKVNNRMASCQLA---------------SVGPTGPGVKEQGAAAQGERKIYVSNVPRD 212
+ ++ RM + A S+G GP V+ RKI+V + +
Sbjct: 90 -KHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP-VR--------TRKIFVGGLASN 139
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
V + + R +FE+FG I + +D T + RGF Y + + KAL + G +
Sbjct: 140 VTEVEFRRYFEQFGMITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMV 199
Query: 273 QCQKAA 278
+ ++A
Sbjct: 200 EVKRAV 205
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
V RKIFV GL + T+ F G I + ++ D T + +GF FI + + A K
Sbjct: 126 VRTRKIFVGGLASNVTEVEFRRYFEQFGMITDVVVMYDHNTQRPRGFGFITYDSEDAVDK 185
Query: 164 ALKNPQRKVNNRMASCQLA 182
AL ++N +M + A
Sbjct: 186 ALHKNFHELNGKMVEVKRA 204
>gi|209875917|ref|XP_002139401.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209555007|gb|EEA05052.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 395
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 37/259 (14%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIF GL TT SL + F GEI + ++ +K TG+++GF FI F + ++ L +
Sbjct: 15 KIFCGGLSDVTTNTSLRTHFSPYGEIVDSVVLTEKTTGRSRGFGFITFASEESVDAVLAS 74
Query: 168 PQRKVNNRMASCQLA-----------------------SVGPTGPGVKEQGAAAQGERKI 204
PQ V+ + C+ A SV +G + KI
Sbjct: 75 PQ-IVDGKEIDCKRAVPRGAIQTNETEGGDPGDNKVTSSVSSSGAVTNNNSSGTFNATKI 133
Query: 205 YVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264
+V +P+ EKLR F ++G I+ + D T + RGF Y++ E ++EE
Sbjct: 134 FVGGLPQSCTDEKLREHFGKYGMIKNLSVMVDRDTNRHRGFGFVEYESPE----SVEEVM 189
Query: 265 KMFEGHQL-----QCQKAAEGKNRT-SSNSSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQ 318
+ + HQ+ +C+KA + +NS+ +NN+ +IQ P + G + N
Sbjct: 190 RHYYDHQIDNKWVECKKALPREIMAGGANSNIANNR---IIQAVSVPQISGYAEYYRNSY 246
Query: 319 EQVLAAMAAAQNLALFGQH 337
+ + + Q +G+H
Sbjct: 247 MPIHSGVQGQQMYGRYGRH 265
>gi|190360152|sp|P0C7M2.1|RA1L3_HUMAN RecName: Full=Putative heterogeneous nuclear ribonucleoprotein
A1-like 3; Short=hnRNP A1-like 3; AltName: Full=hnRNP
core protein A1-like 3
gi|119621694|gb|EAX01289.1| hCG2020860, isoform CRA_b [Homo sapiens]
gi|119621695|gb|EAX01290.1| hCG2020860, isoform CRA_b [Homo sapiens]
Length = 320
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|444520816|gb|ELV13038.1| Heterogeneous nuclear ribonucleoprotein A1 [Tupaia chinensis]
Length = 205
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFRFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|1711240|dbj|BAA13161.1| TIS [Mus musculus]
gi|119617170|gb|EAW96764.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_d [Homo
sapiens]
Length = 268
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|356527120|ref|XP_003532161.1| PREDICTED: uncharacterized protein LOC100805131 [Glycine max]
Length = 513
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 31/188 (16%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF------------ 155
K+F+ G+ WDT +E L FG GE+ E ++ D+VTG+A+GF F+VF
Sbjct: 41 KLFIGGISWDTDEERLKEYFGKYGEVIETVIMRDRVTGRARGFGFVVFGDPSVAERVIMD 100
Query: 156 ------KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNV 209
+T +A ++ Q+ +N + S ++ GPG +KI+V +
Sbjct: 101 KHIIDGRTVEAKKAVPRDDQQNINRQSGSAHVS----PGPGRT---------KKIFVGGL 147
Query: 210 PRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEG 269
P + + + +F++FG I + +D T + RGF Y + E + L + G
Sbjct: 148 PSTITESDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNG 207
Query: 270 HQLQCQKA 277
++ ++A
Sbjct: 208 KMVEVKRA 215
>gi|308490851|ref|XP_003107617.1| CRE-MSI-1 protein [Caenorhabditis remanei]
gi|308250486|gb|EFO94438.1| CRE-MSI-1 protein [Caenorhabditis remanei]
Length = 335
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TT E+L FG GE+ EC ++ D T +A+GF FI F + K L
Sbjct: 42 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNA 101
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ + ++A T Q +K+++ + E L+ +FE +G+
Sbjct: 102 REHELDGKKIDPKVAFPKRT------QAKLVTKTKKVFIGGLSATSTLEDLKQYFETYGK 155
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + +D T + RGF + + E A K E G ++C+KA
Sbjct: 156 VEDAMLMYDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKA 205
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+F+ GL +T E L F G++E+ L+ DK T + +GF F+ F + + A K +
Sbjct: 130 KKVFIGGLSATSTLEDLKQYFETYGKVEDAMLMYDKATQRHRGFGFVTFDSDEVADKVCE 189
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG---FFE 223
++N +M C+ A V+ + A R +Y + E L +
Sbjct: 190 IHFHEINGKMVECKKAQPKEVMLPVQLNKSRAAAARNLY------GMPPETLLAYAQYLP 243
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
RFG G + G GF + + E A K E G ++C+KA
Sbjct: 244 RFG-------GNLMYPGFGNGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKA 290
>gi|156554677|ref|XP_001600539.1| PREDICTED: RNA-binding protein squid-like [Nasonia vitripennis]
Length = 338
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 15/175 (8%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ RK+FV GL W+TT + L F G+IE + D TG+++GFAFIVF ++ K
Sbjct: 53 LNDRKLFVGGLSWETTDKELRDHFSTFGDIESINVKTDPTTGRSRGFAFIVFAKAESLDK 112
Query: 164 ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223
A+ + +NN+ V P ++ A G KI+V + ++ + ++ FF
Sbjct: 113 AMAHGDHIINNK-------KVDP------KKAKARHG--KIFVGGLSTELSDDDIKTFFS 157
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+FG I + FD T + +GF +++ + A + L+ ++ G +++ +KA
Sbjct: 158 QFGTIVDVEMPFDKTKNQRKGFCFITFESEQVANELLKTSKQTISGKEVEVKKAT 212
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 94 DHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAK 148
DHI+ D KIFV GL + + + + + F G I + ++ DK + K
Sbjct: 118 DHIINNKKVDPKKAKARHGKIFVGGLSTELSDDDIKTFFSQFGTIVDVEMPFDKTKNQRK 177
Query: 149 GFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
GF FI F++ + A + LK ++ ++ + + A+ P
Sbjct: 178 GFCFITFESEQVANELLKTSKQTISGKEVEVKKATPRP 215
>gi|426223452|ref|XP_004005889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|209154614|gb|ACI33539.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 359
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+F+T + K L+
Sbjct: 74 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDSNTGRSRGFGFILFQTAASVDKVLEQ 133
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A P +KI+V + + +E +R +F FGE
Sbjct: 134 KEHRLDGRQIDPKKAMAMKKEPA-----------KKIFVGGLNPEATEETIREYFGTFGE 182
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
IE+ + D K RGF +K +K LE K F H + K +GK
Sbjct: 183 IESIELPVDPKFKKRRGFIFITFKEESTVKKCLE---KKF--HNVCGTKVTDGK 231
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E++ FG GEIE +L +D K +GF FI FK K L+
Sbjct: 157 KKIFVGGLNPEATEETIREYFGTFGEIESIELPVDPKFKKRRGFIFITFKEESTVKKCLE 216
>gi|74204146|dbj|BAE39838.1| unnamed protein product [Mus musculus]
Length = 320
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 13/189 (6%)
Query: 102 RDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
RD S RK IF+ L Q+ L F G I CK+V+D+ G++KG+ F+ F+
Sbjct: 91 RDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDE-NGQSKGYGFVHFE 149
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE-RKIYVSNVPRDVEK 215
+ A +A++ K+NN + ++ VG P + + A + + +Y+ N P + +
Sbjct: 150 KEECAERAIE----KINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDN 205
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQC 274
EKL+ F FGEI++ + D + GKS+GF + + A A++ K EG L C
Sbjct: 206 EKLKEMFNEFGEIKSACVMKD-SEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYC 264
Query: 275 QKAAEGKNR 283
+A + R
Sbjct: 265 ARAQRKEER 273
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 13/189 (6%)
Query: 102 RDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
RD S RK IF+ L Q+ L F G I CK+V+D+ G++KG+ F+ F+
Sbjct: 91 RDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDE-NGQSKGYGFVHFE 149
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE-RKIYVSNVPRDVEK 215
+ A +A++ K+NN + ++ VG P + + A + + +Y+ N P + +
Sbjct: 150 KEECAERAIE----KINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDN 205
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQC 274
EKL+ F FGEI++ + D + GKS+GF + + A A++ K EG L C
Sbjct: 206 EKLKEMFNEFGEIKSACVMKD-SEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYC 264
Query: 275 QKAAEGKNR 283
+A + R
Sbjct: 265 ARAQRKEER 273
>gi|5542530|pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
gi|39654500|pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
Query: 167 NPQRKVNNRMASCQLASVGPTG--PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + A PG A +KI+V + D E+ LR +FE+
Sbjct: 67 ARPHKVDGRVVEPKRAVSREDSQRPG------AHLTVKKIFVGGIKEDTEEHHLRDYFEQ 120
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 121 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 173
>gi|355694953|gb|AER99843.1| heteroproteinous nuclear ribonucleoprotein D-like protein [Mustela
putorius furo]
Length = 294
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 94 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 153
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 154 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 201
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 202 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 237
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 144 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 203
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 204 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 255
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 90 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 149
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 150 VLELKEHKLDGKLIDPKRA 168
>gi|397467431|ref|XP_003805422.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Pan
paniscus]
Length = 261
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ +++ R+ + A P +KI+V + + +EK+R +F FGEI
Sbjct: 61 EHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGEFGEI 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
E + D K RGF +K E +K LE+
Sbjct: 110 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 143
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 83 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 142
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 143 KKFHTVSG--SKCEIKVAQP 160
>gi|355704546|gb|AES02263.1| musashi-like protein 2 [Mustela putorius furo]
Length = 306
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 1 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 61 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 114
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 115 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 164
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 89 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 148
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 149 IHFHEINNKMVECKKA 164
>gi|444723245|gb|ELW63904.1| Heterogeneous nuclear ribonucleoprotein D-like protein [Tupaia
chinensis]
Length = 326
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + P ++ A +G+ +K++V + D +E+++ +F
Sbjct: 90 KEHKLDGKL-------IDP------KRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 136
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 137 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 80 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 139
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 140 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 191
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 26 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 85
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 86 VLELKEHKLDGKLIDPKRA 104
>gi|326489793|dbj|BAK01877.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 463
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 7/176 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT ++ L F GE+ E ++ D+ TG+A+GF FIVF A + +
Sbjct: 7 KLFIGGISWDTNEDRLREYFEKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVIM- 65
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE------RKIYVSNVPRDVEKEKLRGF 221
+ ++ RM + A + + G +A G +KI+V + V + R +
Sbjct: 66 EKHMIDGRMVEAKKAVPRDDQQALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRTY 125
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE+FG I + +D T + RGF Y + + KAL + G ++ ++A
Sbjct: 126 FEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALFKTFHELNGKMVEVKRA 181
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL T+ + F G I + ++ D T + +GF FI + + A KAL
Sbjct: 106 KKIFVGGLASTVTEADFRTYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALF 165
Query: 167 NPQRKVNNRMASCQLA 182
++N +M + A
Sbjct: 166 KTFHELNGKMVEVKRA 181
>gi|119617171|gb|EAW96765.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_e [Homo
sapiens]
Length = 317
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|410920299|ref|XP_003973621.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 2
[Takifugu rubripes]
Length = 350
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 92/188 (48%), Gaps = 6/188 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L F GE++EC ++ D VT +++GF F+ + + K L
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYTDQAGVEKVLAQ 82
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +F++FG+
Sbjct: 83 NRHELDSKTIDPKVAFP------RRAQPKLVTRTKKIFVGGLSVNTTIEDVKHYFDQFGK 136
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
++ + FD TT + RGF ++ + K E ++C+KA + T +
Sbjct: 137 VDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMTPTG 196
Query: 288 SSSSNNQA 295
S+ ++
Sbjct: 197 SARGRSRV 204
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 111 KKIFVGGLSVNTTIEDVKHYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 170
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 171 IHFHEINNKMVECKKA 186
>gi|395816803|ref|XP_003781879.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Otolemur
garnettii]
Length = 532
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 10/154 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT++ L GE+ +C + D V+G+++GF F++FK + K L+
Sbjct: 111 KMFIGGLSWDTSKRDLTEYLSRFGEVVDCIIKTDPVSGRSRGFGFVLFKDAASVDKVLEL 170
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ ++ Q A +KE+ + +K++V + D KE+++ +F FGE
Sbjct: 171 KEHKLDGKLIDPQRAK------PLKEK----EPPKKVFVGGLSPDTSKEQIKDYFGAFGE 220
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T + RGF Y E +K LE
Sbjct: 221 IENIELPRDRKTNERRGFCFVTYTEGEPVKKLLE 254
>gi|356552729|ref|XP_003544715.1| PREDICTED: uncharacterized protein LOC100788515 [Glycine max]
Length = 478
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 7/176 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT E L FG GE+ E ++ D+ TG+A+GF F+VF AA + + +
Sbjct: 7 KLFIGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIMD 66
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE------RKIYVSNVPRDVEKEKLRGF 221
+ ++ R + A + Q + G +KI+V +P + + + +
Sbjct: 67 -KHIIDGRTVEAKKAVPRDDQQTINRQSGSIHGSPSPGRTKKIFVGGLPSTITESDFKKY 125
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
F++FG I + +D T + RGF Y + E + L + G ++ ++A
Sbjct: 126 FDQFGTIADVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRA 181
>gi|440905636|gb|ELR55990.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Bos grunniens
mutus]
Length = 180
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 6 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEGDAAMN 65
Query: 167 NPQRKVNNRMASCQLASVGPTG--PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + A PG A +KI+V + D E+ LR +FE+
Sbjct: 66 ARPHKVDGRVVEPKRAVSREDSQRPG------AHLTVKKIFVGGIKEDTEEHHLRDYFEQ 119
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 120 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 172
>gi|440900708|gb|ELR51786.1| hypothetical protein M91_06025, partial [Bos grunniens mutus]
Length = 315
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 9 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 68
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 69 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 120
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 121 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 175
>gi|291402435|ref|XP_002717573.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 3
[Oryctolagus cuniculus]
Length = 268
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDHFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIIIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|403290028|ref|XP_003936135.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Saimiri
boliviensis boliviensis]
Length = 260
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ +++ R+ + A P +KI+V + + +EK+R +F FGEI
Sbjct: 61 EHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGDFGEI 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E + D K RGF +K E +K LE+ G + + + A
Sbjct: 110 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVA 158
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L +D K +GF FI FK + K L+
Sbjct: 83 KKIFVGGLNPEATEEKIREYFGDFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 142
Query: 167 NPQRKVNNRMASCQLASVGP 186
++ + C++ P
Sbjct: 143 KKFHTISG--SKCEIKVAQP 160
>gi|71896741|ref|NP_001026313.1| heterogeneous nuclear ribonucleoprotein D-like [Gallus gallus]
gi|82233707|sp|Q5ZI72.1|HNRDL_CHICK RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL
gi|53136484|emb|CAG32571.1| hypothetical protein RCJMB04_29l7 [Gallus gallus]
Length = 301
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 91 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 137
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 138 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 81 AASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 140
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 141 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 192
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 27 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 86
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 87 VLELKEHKLDGKLIDPKRA 105
>gi|115473043|ref|NP_001060120.1| Os07g0584500 [Oryza sativa Japonica Group]
gi|38175737|dbj|BAC55617.2| putative heterogeneous nuclear ribonucleoprotein A1 [Oryza sativa
Japonica Group]
gi|113611656|dbj|BAF22034.1| Os07g0584500 [Oryza sativa Japonica Group]
gi|215695373|dbj|BAG90564.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 472
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 25/185 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ W+T ++ L F GE+ E ++ D+ TG+A+GF F+VF T + +
Sbjct: 7 KLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVF-TDAGVAERVTM 65
Query: 168 PQRKVNNRMASCQLA---------------SVGPTGPGVKEQGAAAQGERKIYVSNVPRD 212
+ ++ RM + A S+G GPG RKI+V + +
Sbjct: 66 DKHMIDGRMVEAKKAVPRDDQSITSKNNGSSIGSPGPGRT---------RKIFVGGLASN 116
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
V + + R +FE+FG I + +D T + RGF Y + + KAL + G +
Sbjct: 117 VTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMV 176
Query: 273 QCQKA 277
+ ++A
Sbjct: 177 EVKRA 181
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RKIFV GL + T+ F G I + ++ D T + +GF FI + + A KAL
Sbjct: 106 RKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALH 165
Query: 167 NPQRKVNNRMASCQLA 182
++N +M + A
Sbjct: 166 KNFHELNGKMVEVKRA 181
>gi|157110306|ref|XP_001651044.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878768|gb|EAT42993.1| AAEL005515-PB [Aedes aegypti]
Length = 292
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+T+ + L FG GEIE + D TG+++GFAFIV+K+ +
Sbjct: 32 RD-DDRKLFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKSADSI 90
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +NN+ V P ++ A G KI+V + ++ E+++ F
Sbjct: 91 DKVVAAGDHVINNK-------KVDP------KKAKARHG--KIFVGGLTTEISDEEIKTF 135
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + + L+ P++ G ++ +KA
Sbjct: 136 FGQFGNIVEVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKAT 192
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
Y ID + AA DH++ D KIFV GL + + E + + F
Sbjct: 84 YKSADSIDKVVAAG-------DHVINNKKVDPKKAKARHGKIFVGGLTTEISDEEIKTFF 136
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G G I E ++ DK + KGF FI F + + + LK P++ ++ + + A+ P
Sbjct: 137 GQFGNIVEVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPKP 195
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 193 EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKT 252
E +RK++V + + ++L+ F ++GEIE+ + D TG+SRGFA VYK+
Sbjct: 27 ESSNVRDDDRKLFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKS 86
Query: 253 VEGARKAL 260
+ K +
Sbjct: 87 ADSIDKVV 94
>gi|327272896|ref|XP_003221220.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Anolis
carolinensis]
Length = 311
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 41 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 100
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 101 KEHKLDGKLIDPKRA-------------KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGG 147
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 148 FGEIENIELPMDTKTNERRGFCFITYSDEEPVKKLLE 184
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FGG GE
Sbjct: 91 AASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGGFGE 150
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 151 IENIELPMDTKTNERRGFCFITYSDEEPVKKLLESRYHQIGS--GKCEIKVAQP 202
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 37 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 96
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 97 VLELKEHKLDGKLIDPKRA 115
>gi|402887374|ref|XP_003907069.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Papio anubis]
gi|402887376|ref|XP_003907070.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 2 [Papio anubis]
Length = 320
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++T ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETIDESLRSHFEQWGTLMDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKTAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVNEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|350396366|ref|XP_003484530.1| PREDICTED: RNA-binding protein squid-like isoform 2 [Bombus
impatiens]
Length = 362
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ RK+FV GL W+TT + L FG G+IE + D TG+++GFAFIVF ++ K
Sbjct: 51 LNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDK 110
Query: 164 ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223
+ +NN+ V P ++ A G K++V + ++ + ++ FF
Sbjct: 111 IMAAGDHIINNK-------KVDP------KKAKARHG--KVFVGGLSTELSDDDIKHFFS 155
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+FG I + FD T + +GF +++ + + L+ P++ G ++ +KA
Sbjct: 156 QFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKAT 210
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
++K + +D I AA DHI+ D K+FV GL + + + + F
Sbjct: 102 FAKAESLDKIMAAG-------DHIINNKKVDPKKAKARHGKVFVGGLSTELSDDDIKHFF 154
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G I E ++ DK + KGF FI F++ + + LK P++ +N + + A+ P
Sbjct: 155 SQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKATPKP 213
>gi|8393547|ref|NP_058944.1| heterogeneous nuclear ribonucleoprotein A1 [Rattus norvegicus]
gi|133255|sp|P04256.3|ROA1_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; Short=HDP; AltName: Full=Single-strand
RNA-binding protein; AltName: Full=hnRNP core protein A1
gi|204580|gb|AAA41314.1| helix destabilizing protein [Rattus norvegicus]
Length = 320
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|224110618|ref|XP_002315580.1| predicted protein [Populus trichocarpa]
gi|222864620|gb|EEF01751.1| predicted protein [Populus trichocarpa]
Length = 459
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 11/185 (5%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D Q K+F+ G+ W+T++E L FG G++ + ++ DK TG+ +GF F+VF A +
Sbjct: 2 DSDQGKLFIGGISWETSEEKLRDYFGQYGDVLQAVVMKDKTTGRPRGFGFVVFAD-PAVL 60
Query: 163 KALKNPQRKVNNRMASCQL----------ASVGPTGPGVKEQGAAAQGERKIYVSNVPRD 212
+ + ++ RM + A G P G +KI+V +P
Sbjct: 61 DMVLQDKHTIDGRMVEAKRALSREEQQTNARAGNLNPARNTSGGGNIRTKKIFVGGLPPT 120
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
+ ++ R +FE FG + I +D +T + RGF + T + + L+ G Q+
Sbjct: 121 LTEDGFRQYFEAFGFVADVVIMYDQSTQRPRGFGFISFDTEDAVDRVLQRSFHDLNGKQV 180
Query: 273 QCQKA 277
+ ++A
Sbjct: 181 EVKRA 185
>gi|109098438|ref|XP_001091114.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 3 [Macaca mulatta]
gi|109098440|ref|XP_001091244.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 4 [Macaca mulatta]
gi|297263360|ref|XP_002798798.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Macaca mulatta]
Length = 320
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C + D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVAMRDPNTKRSRGFRFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKTAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKA 180
>gi|254566735|ref|XP_002490478.1| Subunit of cleavage factor I [Komagataella pastoris GS115]
gi|238030274|emb|CAY68197.1| Subunit of cleavage factor I [Komagataella pastoris GS115]
gi|328350869|emb|CCA37269.1| Nuclear polyadenylated RNA-binding protein 4 [Komagataella pastoris
CBS 7435]
Length = 462
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
Q K+F+ GL W+TT+E+L + FG G+I + ++ D TG+++GF F+ F T+ A+V +
Sbjct: 152 QGKMFIGGLNWETTEETLRNYFGQFGDITDLTIMRDNATGRSRGFGFLTF-TKTASVDEV 210
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
Q ++ ++ + A + + G KI+V + +V +E +F +F
Sbjct: 211 LKKQHVLDGKLIDPKRA--------IPREEQDKTG--KIFVGGIAAEVTEEDFTDYFSQF 260
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTS 285
G I + D TG+SRGF Y + + + +G ++ K AE +N+
Sbjct: 261 GTIIDAQLMIDKDTGRSRGFGFVTYDSPDAVDRVCANKYVPLKGRSMEI-KRAEPRNQQQ 319
Query: 286 SNSSSSN 292
+ +++N
Sbjct: 320 NQRTNAN 326
>gi|221220742|gb|ACM09032.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 336
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L+
Sbjct: 83 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDSNTGRSRGFGFILFKEAGSVDKVLEQ 142
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A P +KI+V + + +E +R +F FGE
Sbjct: 143 KEHRLDGRQIDPKKAMAMKKEPA-----------KKIFVGGLNPEATEETIREYFGTFGE 191
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE+ + D+ K RGF +K +K LE
Sbjct: 192 IESIELPVDLKFKKRRGFIFITFKEEATVKKCLE 225
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 185 GPTGPGVKEQGA--AAQGER---KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239
G T G E G A++GE K++V + D K+ L+ +F +FGE+ I D T
Sbjct: 60 GVTQNGAAEGGQINASKGEDDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDSNT 119
Query: 240 GKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G+SRGF ++K K LE+ + +G Q+ +KA
Sbjct: 120 GRSRGFGFILFKEAGSVDKVLEQKEHRLDGRQIDPKKA 157
>gi|327263824|ref|XP_003216717.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Anolis
carolinensis]
Length = 354
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL + F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRNHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|36102|emb|CAA29922.1| unnamed protein product [Homo sapiens]
Length = 320
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E+FG+IE I D +GK +GFA + + K + + GH + +KA
Sbjct: 126 EQFGKIEVIEIMTDRGSGKKKGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|148671985|gb|EDL03932.1| mCG15678, isoform CRA_c [Mus musculus]
Length = 335
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 29 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 88
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 89 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 140
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 141 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 195
>gi|2780748|dbj|BAA24361.1| hnRNP JKTBP [Homo sapiens]
gi|4512255|dbj|BAA75240.1| JKTBP1 [Homo sapiens]
Length = 301
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 137
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 138 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 80 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 139
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 140 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 191
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 26 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 85
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 86 VLELKEHKLDGKLIDPKRA 104
>gi|395845801|ref|XP_003795610.1| PREDICTED: RNA-binding protein Musashi homolog 2 [Otolemur
garnettii]
Length = 324
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 6/169 (3%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+++++ ++A + Q +KI+V + + E ++ +FE+FG++
Sbjct: 61 HHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 114
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E + FD TT + RGF +++ + K E ++C+KA
Sbjct: 115 EDAMLMFDKTTNRHRGFGFVTFESEDVVEKVCEIHFHEINNKMVECKKA 163
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F++ K +
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFESEDVVEKVCE 147
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 148 IHFHEINNKMVECKKA 163
>gi|297681162|ref|XP_002818335.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Pongo abelii]
Length = 321
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLNFETTNESLRSHFEQWGTLMDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + +D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAISRED----SQRPGAHLTVKKIFVGGIKKDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHVCEVRKA 180
>gi|340729952|ref|XP_003403257.1| PREDICTED: RNA-binding protein squid-like isoform 1 [Bombus
terrestris]
Length = 362
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ RK+FV GL W+TT + L FG G+IE + D TG+++GFAFIVF ++ K
Sbjct: 51 LNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDK 110
Query: 164 ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223
+ +NN+ V P ++ A G K++V + ++ + ++ FF
Sbjct: 111 IMAAGDHIINNK-------KVDP------KKAKARHG--KVFVGGLSTELSDDDIKHFFS 155
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+FG I + FD T + +GF +++ + + L+ P++ G ++ +KA
Sbjct: 156 QFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKAT 210
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
++K + +D I AA DHI+ D K+FV GL + + + + F
Sbjct: 102 FAKAESLDKIMAAG-------DHIINNKKVDPKKAKARHGKVFVGGLSTELSDDDIKHFF 154
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G I E ++ DK + KGF FI F++ + + LK P++ +N + + A+ P
Sbjct: 155 SQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKATPKP 213
>gi|302121706|gb|ADK92872.1| hnRNP [Hypericum perforatum]
Length = 477
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 26/187 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ WDT +E L FG G++ E ++ D+ TG+A+GF FIVF A + +K
Sbjct: 7 KLFVGGISWDTNEERLKEYFGSFGDVVEAVIMKDRTTGRARGFGFIVFADPSVADRVIKE 66
Query: 168 PQRKVNNRMASCQLA------------SV----GPTGPGVKEQGAAAQGERKIYVSNVPR 211
+ ++ RM + A SV G GP RKI+V +
Sbjct: 67 -KHNIDGRMVEAKRAIPRDDQNIPSRNSVSSMHGSPGP---------DHTRKIFVGGLAS 116
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
V + + +F++FG I + +D T + RGF Y + E K L + G
Sbjct: 117 TVTESDFKNYFDQFGIIIDAVVMYDHNTQRPRGFGFITYDSDEAVDKVLTKTFHELNGKM 176
Query: 272 LQCQKAA 278
++ ++A
Sbjct: 177 VEVKRAV 183
>gi|432854564|ref|XP_004067963.1| PREDICTED: DAZ-associated protein 1-like isoform 2 [Oryzias
latipes]
Length = 435
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L + F GE+ +C ++ DK T +++GF F+ FK L+
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVRTVLET 71
Query: 168 PQRKVNNRMAS---CQLASVGP----TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
++ R C + P T G K A + +KI+V +P + + +LR
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKSRTKEGWKGSKADSNKSKKIFVGGIPHNCGEPELRD 131
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F RFG + + +D + RGF ++ + +A+ G +++ +KA
Sbjct: 132 YFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKA 188
>gi|81917948|sp|Q9Z130.1|HNRDL_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL; AltName:
Full=JKT41-binding protein
gi|4514631|dbj|BAA75479.1| JKTBP [Mus musculus]
gi|18203892|gb|AAH21374.1| Heterogeneous nuclear ribonucleoprotein D-like [Mus musculus]
gi|74196730|dbj|BAE43104.1| unnamed protein product [Mus musculus]
gi|148688362|gb|EDL20309.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_b [Mus
musculus]
Length = 301
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 137
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 138 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 80 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 139
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 140 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 191
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 26 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 85
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 86 VLELKEHKLDGKLIDPKRA 104
>gi|291402433|ref|XP_002717572.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 327
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 12/187 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDHF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
E++G+IE I D +GK RGFA + + K + + GH + +KA +
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIIIQKYHTVNGHNCEVRKALSKQE 185
Query: 283 RTSSNSS 289
S++S+
Sbjct: 186 MASASST 192
>gi|350540024|ref|NP_001232117.1| heterogeneous nuclear ribonucleoprotein D-like [Taeniopygia
guttata]
gi|197129483|gb|ACH45981.1| putative heterogeneous nuclear ribonucleoprotein D-like variant 1
[Taeniopygia guttata]
Length = 301
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 91 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 137
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T RGF Y E +K LE
Sbjct: 138 FGEIENIELPMDTKTNXRRGFCFITYTDEEPVKKLLE 174
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 81 AASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 140
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T +GF FI + + K L++ ++ + C++ P
Sbjct: 141 IENIELPMDTKTNXRRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 192
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 27 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 86
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 87 VLELKEHKLDGKLIDPKRA 105
>gi|15010818|dbj|BAB62188.1| JKTBP1delta6 [Homo sapiens]
Length = 244
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 137
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 138 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 80 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 139
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 140 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 191
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 26 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 85
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 86 VLELKEHKLDGKLIDPKRA 104
>gi|149046813|gb|EDL99587.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_b
[Rattus norvegicus]
Length = 300
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 137
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 138 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 80 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 139
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 140 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 191
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 26 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 85
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 86 VLELKEHKLDGKLIDPKRA 104
>gi|291384352|ref|XP_002708768.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 320
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++ T ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFEMTDESLRSHFEQWGMLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVLRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|1465873|dbj|BAA07211.1| Bmsqd-2 [Bombyx mori]
Length = 303
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT + L FG EIE + TG+++GFAFIVFK ++
Sbjct: 39 RD-DDRKLFVGGLSWETTDKELRDHFGAYREIESINVKTVPNTGRSRGFAFIVFKAPESI 97
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + + +NN+ + A A G KI+V + ++ +++R F
Sbjct: 98 DKVMAAGEHTINNKKVDPKKAK-------------ARHG--KIFVGGLSSEISDDEIRNF 142
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F FG I + FD T + +GF +++ + L+ P++ G ++ ++A
Sbjct: 143 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 199
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV GL + + + + + F G I E ++ DK + KGF FI F++ + LK
Sbjct: 124 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 183
Query: 168 PQRKVNNRMASCQLASVGP 186
P+R + + + A+ P
Sbjct: 184 PKRTIGGKEVDVKRATPKP 202
>gi|339248325|ref|XP_003375796.1| RNA-binding protein squid [Trichinella spiralis]
gi|316970795|gb|EFV54670.1| RNA-binding protein squid [Trichinella spiralis]
Length = 329
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+RKIFV G+ WDT + L + F G++ ++ D TG+++GFAF+ F T +A KAL
Sbjct: 57 ERKIFVGGISWDTNENDLTNHFNQFGDVVHVQVKYDHYTGRSRGFAFVEFATAEACKKAL 116
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
++ + C++ A ++ +K++V +P D +E LR E+F
Sbjct: 117 AKKDAELKGK--KCEVKP------------AKSRENKKLFVGGLPSDYTEELLRKHMEQF 162
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMF 267
G +E FD K + FA V++ +GA A P++ F
Sbjct: 163 GRVEEIEWPFDKVNNKRKNFAFIVFEDDDGAAAAAALPKQRF 204
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
ERKI+V + D + L F +FG++ + +D TG+SRGFA + T E +KAL
Sbjct: 57 ERKIFVGGISWDTNENDLTNHFNQFGDVVHVQVKYDHYTGRSRGFAFVEFATAEACKKAL 116
Query: 261 EEPQKMFEGHQLQCQKAAEGKNR 283
+ +G + + + A +N+
Sbjct: 117 AKKDAELKGKKCEVKPAKSRENK 139
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL D T+E L G +EE + DKV K K FAFIVF+ A A
Sbjct: 139 KKLFVGGLPSDYTEELLRKHMEQFGRVEEIEWPFDKVNNKRKNFAFIVFEDDDGAAAAAA 198
Query: 167 NPQRKVNNRMASCQLA---SVGP---TGPGVKEQ 194
P+++ +R ++A + P GPG+ +Q
Sbjct: 199 LPKQRFGDRTCDVKIAVPQYMRPQKTAGPGMSQQ 232
>gi|90076284|dbj|BAE87822.1| unnamed protein product [Macaca fascicularis]
Length = 231
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 10/154 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ ++ + A +K +G +K++V + D +E+++ +F FGE
Sbjct: 90 KEHKLDGKLIDPKRAKA------LKGKGPP----KKVFVGGLSPDTSEEQIKEYFGAFGE 139
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T + RGF Y E +K LE
Sbjct: 140 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 80 AASVDKVLELKEHKLDGKLIDPKRAKALKGKGPPKKVFVGGLSPDTSEEQIKEYFGAFGE 139
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 140 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 191
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 26 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 85
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 86 VLELKEHKLDGKLIDPKRA 104
>gi|66363266|ref|XP_628599.1| T8M16_190 RRM protein of possible plant origin [Cryptosporidium
parvum Iowa II]
gi|46229606|gb|EAK90424.1| T8M16_190 RRM protein of possible plant origin [Cryptosporidium
parvum Iowa II]
gi|323509079|dbj|BAJ77432.1| cgd7_4480 [Cryptosporidium parvum]
Length = 383
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 120/247 (48%), Gaps = 17/247 (6%)
Query: 56 ESESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLG 115
E E E ++ SLL SK+QL+D+++ +A ++ + +R R++ V +
Sbjct: 40 EEEGIVEFRNVVSLL---SKEQLVDILSKSAYLYNIIGNACKLIVERSPVSRRVMVRNIS 96
Query: 116 WDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNR 175
+ T+ + L+ F GEIE+ ++ +K G+++G+ F+ +K+ ++ +K L N +N R
Sbjct: 97 FQTSDKVFLNLFEKFGEIEDSTIIREK-NGRSRGYGFVTYKSSES-IKKLFNENLILNGR 154
Query: 176 MASCQLA-------SVGPTGPGVK-----EQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223
+LA + GP + ++ + ++K+++ N+ E LR F
Sbjct: 155 QLLVKLAADPFSEFTCGPIDCNKQVMESNQRLTSTIFKKKLFIRNLSESTTNESLRQAFS 214
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
F +IE + D TGKSR + + + K L+ P+++ +G A + K+
Sbjct: 215 EFEDIEECFVMRDHNTGKSRKYGFITFNNLGDMMKVLQHPERIVDGKVTFVSLAFKQKDT 274
Query: 284 TSSNSSS 290
+++N S
Sbjct: 275 SNANKKS 281
>gi|390457874|ref|XP_003732018.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Callithrix jacchus]
Length = 320
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTYCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A + I+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDRRVVEPKRAVSREDS----QRPGAHLTVKNIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMMDRGSGKKRGFAFVTFDNHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|242006645|ref|XP_002424159.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Pediculus
humanus corporis]
gi|212507484|gb|EEB11421.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Pediculus
humanus corporis]
Length = 423
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G++ +C ++ + +G+++GF F+ F L+N
Sbjct: 20 KLFVGGLSWETTQEALQRYFSRYGDVVDCVVMKNTESGRSRGFGFVTFADPTNVGVVLQN 79
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P + G K+++ +P +V + LR FF R+G+
Sbjct: 80 GPHVLDGRTIDPK-----PCNPRTLSKPKRNNGYPKVFLGGLPSNVTETDLRQFFMRYGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA----AEGKNR 283
+ I +D KSRGF ++ + + + + G Q++ +KA A GK
Sbjct: 135 VMEVVIMYDQEKKKSRGFGFLSFEDEDAVERCVADHFVNLHGKQVEIKKAEPRDASGKMN 194
Query: 284 TSSNS 288
S N+
Sbjct: 195 DSGNT 199
>gi|38327502|gb|AAR17782.1| CArG binding factor [Homo sapiens]
Length = 298
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 86
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 87 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 134
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 135 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 170
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 77 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 136
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 137 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 188
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 23 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 82
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 83 VLELKEHKLDGKLIDPKRA 101
>gi|47087353|ref|NP_998557.1| heterogeneous nuclear ribonucleoprotein D-like [Danio rerio]
gi|33416353|gb|AAH55525.1| Heterogeneous nuclear ribonucleoprotein D-like [Danio rerio]
Length = 296
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 27/171 (15%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D +TG+++GF F++FK ++ + L+
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D+ +E+LR +F
Sbjct: 91 TEHKLDGKLIDPKRA-------------KAIKGKEPPKKVFVGGLSPDITEEQLREYFGV 137
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP-QKMFEG--HQL 272
+GEIE+ + D T + RGF + ALEEP QK+ E HQ+
Sbjct: 138 YGEIESIELPTDTKTNERRGFCFVTF--------ALEEPVQKLLENRYHQI 180
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL D T+E L FG GEIE +L D T + +GF F+ F + K L+
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLE 174
Query: 167 NPQRKVNNRMASCQLASVGP 186
N ++ + C++ P
Sbjct: 175 NRYHQIGS--GKCEIKVAQP 192
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K+++ + D K+ L + RFGE+ I D TG+SRGF ++K E + LE
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 263 PQKMFEGHQLQCQKA 277
+ +G + ++A
Sbjct: 91 TEHKLDGKLIDPKRA 105
>gi|428673104|gb|EKX74017.1| conserved hypothetical protein [Babesia equi]
Length = 359
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
D D KIF GL TT E L S F GE+ ++V DKVTGK++GF F+ F + +
Sbjct: 12 TDSDFETHKIFAGGLNRATTAEDLKSYFSKYGEVVHSEIVGDKVTGKSRGFGFVTF-SNE 70
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A++A+ + K++N + +LA K+ +I+V V ++ +E +
Sbjct: 71 DAIRAVLSKTHKLDNVVVDVKLAVRKDR---AKQLLPPKDEYSRIFVGGVSENITEEYFK 127
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+F R+G I + D T + RGF +Y+ E KA+
Sbjct: 128 EYFSRYGHITSYNYIVDKDTNRPRGFGFVIYEKSEDCDKAI 168
>gi|449019177|dbj|BAM82579.1| probable heterogeneous nuclear RNP protein A [Cyanidioschyzon
merolae strain 10D]
Length = 273
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 114/261 (43%), Gaps = 23/261 (8%)
Query: 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA 160
+R +RK+FV GL WDT + SL++ F G++ + ++ ++ TG+ +GF F+ F+
Sbjct: 2 ERKDKRRKVFVGGLSWDTNEASLVAYFERFGKVIDAVVMRNRETGQPRGFGFVTFEEEGV 61
Query: 161 AVKALKNPQRKVNNRMASCQLA-----------SVGPTGPGVKEQGAAAQGERKIYVSNV 209
A + +++ R+ ++A +V T G + R++YVS +
Sbjct: 62 AQAVASLERHELDGRLVETKVAVPKSAEDPESNTVVDTAQRYGPSGLGEKPSRRVYVSGL 121
Query: 210 PRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK--ALEEPQKMF 267
P+ ++ LR FF RFG +E + D TG S+G+ V+ ++K +L+ +
Sbjct: 122 PQACTEDDLRAFFSRFGSLEAVRVVVDHHTGLSKGYGFVVFAETAASQKVQSLDPENFVI 181
Query: 268 EGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQEQVLAAMAA 327
G + + N +S ++ N + + G QG + V + A
Sbjct: 182 RGSAFRVKVRCCRNNESSRPKHTNGNPWGLTPDALLKSAHDGNHQGYSFDDMGVDTGIVA 241
Query: 328 AQNLALFGQHPGMHPLYGGFL 348
+H +YGG L
Sbjct: 242 QY----------LHAVYGGDL 252
>gi|449276581|gb|EMC85043.1| Heterogeneous nuclear ribonucleoprotein D-like protein, partial
[Columba livia]
Length = 271
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 1 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 61 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 107
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 108 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 144
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 51 AASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 110
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 111 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 162
>gi|326503278|dbj|BAJ99264.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 299
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 56/87 (64%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D +Q K+FV GL W+T E L F G+I E ++ D++TG++KG+ F+ F+ +AA
Sbjct: 18 DTTQTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFREAEAAR 77
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGP 189
+A+++P + R A+C +AS+GP P
Sbjct: 78 RAVEDPNPTITGRRANCNIASLGPPRP 104
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+ K++V + + E LR FE++G+I + D TG+S+G+ ++ E AR+A+
Sbjct: 21 QTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFREAEAARRAV 80
Query: 261 EEPQKMFEGHQLQCQKAAEGKNRTS 285
E+P G + C A+ G R +
Sbjct: 81 EDPNPTITGRRANCNIASLGPPRPA 105
>gi|291402431|ref|XP_002717571.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 371
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 12/187 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDHF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
E++G+IE I D +GK RGFA + + K + + GH + +KA +
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIIIQKYHTVNGHNCEVRKALSKQE 185
Query: 283 RTSSNSS 289
S++S+
Sbjct: 186 MASASST 192
>gi|430813105|emb|CCJ29521.1| unnamed protein product [Pneumocystis jirovecii]
Length = 397
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W+TT ESL + F GE+ EC ++ D TG+++GF F+ FK K V +
Sbjct: 1 MFIGGLNWETTDESLRAYFEQFGEVTECNVMRDSSTGRSRGFGFLTFKDPK-CVNTVMVK 59
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ ++ ++ + A +EQ A K++V V +D +++ R FF FG +
Sbjct: 60 EHYLDGKIIDPKRAIP------REEQEKTA----KMFVGGVSQDCTEDEFREFFSAFGRV 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
+ D TG+ RGF +++ A+ +P Q++ ++A N
Sbjct: 110 IDATLMIDKDTGRPRGFGFVTFESDAAVENAMSQPYLAIHDKQIEVKRATPKGN 163
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ D T++ F G + + L+IDK TG+ +GF F+ F++ A A+
Sbjct: 84 KMFVGGVSQDCTEDEFREFFSAFGRVIDATLMIDKDTGRPRGFGFVTFESDAAVENAMSQ 143
Query: 168 PQRKVNNRMASCQLAS 183
P ++++ + A+
Sbjct: 144 PYLAIHDKQIEVKRAT 159
>gi|26350925|dbj|BAC39099.1| unnamed protein product [Mus musculus]
Length = 301
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 95/190 (50%), Gaps = 8/190 (4%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 1 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG++
Sbjct: 61 RHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 114
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNS 288
+ + FD TT + RGF +++ + K E ++C+KA S +
Sbjct: 115 DDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ--PKEVMSPT 172
Query: 289 SSSNNQAQMM 298
S+ ++++M
Sbjct: 173 GSARGRSRVM 182
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 88 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 147
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 148 IHFHEINNKMVECKKAQPKEVMSPTG 173
>gi|359063952|ref|XP_003585907.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Bos taurus]
Length = 320
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFRFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHSCEVRKA 180
>gi|297632376|ref|NP_001172077.1| ELAV-like protein 1 [Oryctolagus cuniculus]
gi|296399062|gb|ADH10369.1| embryonic lethal abnormal vision-like 1 protein [Oryctolagus
cuniculus]
Length = 326
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQE L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A KA+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAEKAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDAHEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|349604934|gb|AEQ00343.1| Heteroproteinous nuclear ribonucleoprotein D-like-like protein,
partial [Equus caballus]
Length = 297
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 26 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 85
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 86 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 133
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 134 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 169
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 76 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 135
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 136 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 187
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 22 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 81
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 82 VLELKEHKLDGKLIDPKRA 100
>gi|15220810|ref|NP_173208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332191496|gb|AEE29617.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 369
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 4/184 (2%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ W+TT E+ + FG GE+ + ++ D++TG +GF F+ F A K L+
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++R L P G + A ++ RKI+V +P +E+++L+ +F +G+
Sbjct: 127 DH-VIDDR--KVDLKRTLPRGDKDTDIKAVSK-TRKIFVGGLPPLLEEDELKNYFCVYGD 182
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
I I +D TG+SRGF ++T + + + + G + K AE K N
Sbjct: 183 IIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDN 242
Query: 288 SSSS 291
S S
Sbjct: 243 SFRS 246
>gi|410920297|ref|XP_003973620.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 1
[Takifugu rubripes]
Length = 331
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 92/188 (48%), Gaps = 6/188 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L F GE++EC ++ D VT +++GF F+ + + K L
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYTDQAGVEKVLAQ 82
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +F++FG+
Sbjct: 83 NRHELDSKTIDPKVAFP------RRAQPKLVTRTKKIFVGGLSVNTTIEDVKHYFDQFGK 136
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
++ + FD TT + RGF ++ + K E ++C+KA + T +
Sbjct: 137 VDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMTPTG 196
Query: 288 SSSSNNQA 295
S+ ++
Sbjct: 197 SARGRSRV 204
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 111 KKIFVGGLSVNTTIEDVKHYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 170
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 171 IHFHEINNKMVECKKA 186
>gi|383851133|ref|XP_003701094.1| PREDICTED: RNA-binding protein squid-like isoform 1 [Megachile
rotundata]
Length = 338
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ RK+FV GL W+TT + L FG G+IE + D TG+++GFAFIVF ++ K
Sbjct: 51 LNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDK 110
Query: 164 ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223
+ +N + V P ++ A G KI+V + ++ E ++ FF
Sbjct: 111 IMSANDHIINGK-------KVDP------KKAKARHG--KIFVGGLSTELSDEDIKNFFS 155
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+FG I + FD T + +GF +++ + + L+ P++ G ++ +KA
Sbjct: 156 QFGTIVDVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKAT 210
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + KI +DHI+ D KIFV GL + + E + + F G I + +
Sbjct: 105 AESLDKIMSANDHIINGKKVDPKKAKARHGKIFVGGLSTELSDEDIKNFFSQFGTIVDVE 164
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F++ + + LK P++ +N + + A+ P
Sbjct: 165 MPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKATPKP 213
>gi|112421201|ref|NP_001036248.1| heterogeneous nuclear ribonucleoprotein A1 [Macaca mulatta]
gi|2500575|sp|Q28521.3|ROA1_MACMU RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand-binding protein;
AltName: Full=hnRNP core protein A1
gi|1332379|gb|AAB01436.1| hnRNP A1-gamma isoform [Macaca mulatta]
Length = 320
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|392332853|ref|XP_003752716.1| PREDICTED: regulator of G-protein signaling protein-like [Rattus
norvegicus]
Length = 1173
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 10/174 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 729 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 788
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGA---AAQGERKIYVSNVPRDVEKEKLRGFFE 223
KV+ R+ V P +E A +KI+V + D E+ LR +FE
Sbjct: 789 ARPHKVDGRV-------VEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFE 841
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 842 KYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 895
>gi|343427636|emb|CBQ71163.1| related to HRP1-subunit of cleavage factor I [Sporisorium reilianum
SRZ2]
Length = 588
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 31/217 (14%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA------ 161
K+F+ GL WDTT++SL F GE+ C ++ D +TG+++GFAF+ F KA
Sbjct: 168 KMFIGGLNWDTTEDSLRRYFSQFGEVGHCTVMRDNMTGRSRGFAFLNFVNPKAVNTVVVR 227
Query: 162 -----------VKALKNPQRKVN---NRMASCQLASVGPTGPGVKEQGAAAQGERKIYVS 207
+A+ PQR N + AS G G G +K++V
Sbjct: 228 EHYLDGKVIDPKRAIPRPQRDSNFNAHHNGGQGQASYNNNGGGAGGGGGYNAQSQKLFVG 287
Query: 208 NVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMF 267
+P V R FFE+FG + D TG RGF Y+ + L +F
Sbjct: 288 GLPASVTPASFRMFFEQFGTLAECTCMMDRETGNPRGFGFLTYQDDAALQHVLSTRPLVF 347
Query: 268 EGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQ 304
+G ++ ++A S N+ + I++QQ+
Sbjct: 348 DGKEVDVKRA-----------QSKNDPQSLQIRRQQR 373
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
E K+++ + D ++ LR +F +FGE+ + D TG+SRGFA +
Sbjct: 166 EGKMFIGGLNWDTTEDSLRRYFSQFGEVGHCTVMRDNMTGRSRGFAFLNF 215
>gi|432854562|ref|XP_004067962.1| PREDICTED: DAZ-associated protein 1-like isoform 1 [Oryzias
latipes]
Length = 404
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L + F GE+ +C ++ DK T +++GF F+ FK L+
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVRTVLET 71
Query: 168 PQRKVNNRMAS---CQLASVGP----TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
++ R C + P T G K A + +KI+V +P + + +LR
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKSRTKEGWKGSKADSNKSKKIFVGGIPHNCGEPELRD 131
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F RFG + + +D + RGF ++ + +A+ G +++ +KA
Sbjct: 132 YFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKA 188
>gi|348508132|ref|XP_003441609.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 2
[Oreochromis niloticus]
Length = 363
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L F GE++EC ++ D VT +++GF F+ + + K L
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYAEQAGVEKVLAQ 82
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +F++FG+
Sbjct: 83 NRHELDSKTIDPKVAFP------RRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGK 136
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF ++ + K E ++C+KA
Sbjct: 137 VDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 186
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 111 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 170
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 171 IHFHEINNKMVECKKAQPKEVMTPTG 196
>gi|298708562|emb|CBJ30647.1| RNA-binding protein, putative [Ectocarpus siliculosus]
Length = 462
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIF+ GL W TT++ L + FG G + + L+ +K+TG+ +GF F+ F+ +A ALK
Sbjct: 62 KIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKE 121
Query: 168 PQRKVNNRMASCQLASVGPTGP---------GVKEQGAAAQGER-----------KIYVS 207
+ ++ R + A P +G + G R KI+V
Sbjct: 122 -EHVIDGRTIDVKRAVPRDRAPLPRAAADRNSANARGGSQVGGRHGGMNDAPLTNKIFVG 180
Query: 208 NVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMF 267
+ ++V RG+F +FG++E + +D TG+SRGF Y + + RK +
Sbjct: 181 GLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHEL 240
Query: 268 EGHQLQCQKAA 278
+G ++ + AA
Sbjct: 241 KGKSVEVKTAA 251
>gi|417409403|gb|JAA51208.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 292
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 12/156 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 31 KMFVGGLSWDTSKNDLKDYFSKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 90
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +E++R +F FGE
Sbjct: 91 KEHRLDGRVIDPKKAMAMKKEP-----------VKKIFVGGLNPEATEEEIREYFGEFGE 139
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEG-ARKALEE 262
IE + D + K RGF +K E RKALE+
Sbjct: 140 IEAIDLPMDPKSHKRRGFVFITFKEEEEPVRKALEK 175
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
+KIFV GL + T+E + FG GEIE L +D + K +GF FI FK + V+
Sbjct: 114 KKIFVGGLNPEATEEEIREYFGEFGEIEAIDLPMDPKSHKRRGFVFITFKEEEEPVR 170
>gi|429892786|gb|AGA18938.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 418
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV+GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 5 KLFVYGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 64
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 65 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGK 118
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 119 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 175
Query: 288 SSSSNN 293
+SNN
Sbjct: 176 GQNSNN 181
>gi|109131409|ref|XP_001082949.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
3 [Macaca mulatta]
gi|297304279|ref|XP_001082690.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Macaca mulatta]
Length = 320
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHPVNGHNCEVRKA 180
>gi|47218115|emb|CAG09987.1| unnamed protein product [Tetraodon nigroviridis]
Length = 419
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 97/196 (49%), Gaps = 10/196 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT+ESL + F G + +C ++ + +++GF F+ + + + +A+K
Sbjct: 7 RKLFIGGLSFETTEESLRAHFEKWGSLTDCVVMREPSCKRSRGFGFVTYSSLREVDEAMK 66
Query: 167 NPQRKVNNRMASCQ--LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + ++ PG A +KI+V + D E++++R +FE+
Sbjct: 67 ARPHKVDGRVVEPKRAVSREDSNKPG------AHLSVKKIFVGGIKEDTEEDQIRDYFEK 120
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK--N 282
+G+IE I + +TGK RGF + + K + + H + +KA + N
Sbjct: 121 YGKIECVDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKALSKQEMN 180
Query: 283 RTSSNSSSSNNQAQMM 298
SSN S M
Sbjct: 181 AISSNRGRSGGSGNFM 196
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
+S +KIFV G+ DT ++ + F G+IE ++ ++ TGK +GF F+ F K
Sbjct: 95 LSVKKIFVGGIKEDTEEDQIRDYFEKYGKIECVDIMEERSTGKKRGFCFVTFDDHDTVDK 154
Query: 164 ALKNPQRKVNNRMASCQL 181
+ +N+ +C++
Sbjct: 155 IVAQKYHTINSH--NCEV 170
>gi|344243477|gb|EGV99580.1| RNA-binding protein Musashi-like 2 [Cricetulus griseus]
Length = 325
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 6/169 (3%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+++++ ++A + Q +KI+V + + E ++ +FE+FG++
Sbjct: 61 HHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 114
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 115 EDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 163
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 148 IHFHEINNKMVECKKA 163
>gi|223647288|gb|ACN10402.1| Heterogeneous nuclear ribonucleoprotein A1 [Salmo salar]
gi|223673171|gb|ACN12767.1| Heterogeneous nuclear ribonucleoprotein A1 [Salmo salar]
Length = 384
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL + F G + +C ++ D +++GF F+ + A++
Sbjct: 13 RKLFIGGLSFETTDESLRAHFEQWGSLTDCVVMRDPANKRSRGFGFVTYAGVNEVDAAME 72
Query: 167 NPQRKVNNRMASCQ--LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + ++ + PG A +KI+V + D E LR +FE+
Sbjct: 73 ARPHKVDGRLVEPKRAVSREDSSRPG------AHVTVKKIFVGGIKEDTEDSHLRDYFEQ 126
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FG+IE I D +GK RGFA + + + + + GH + +KA
Sbjct: 127 FGKIEVIDIMTDRNSGKKRGFAFVTFDDHDAVDRIVIQKYHTLNGHNCEVRKA 179
>gi|291389275|ref|XP_002711073.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 269
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK R FA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRSFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|397493092|ref|XP_003817447.1| PREDICTED: RNA-binding protein Musashi homolog 2 [Pan paniscus]
gi|403279708|ref|XP_003931388.1| PREDICTED: RNA-binding protein Musashi homolog 2 [Saimiri
boliviensis boliviensis]
gi|194379116|dbj|BAG58109.1| unnamed protein product [Homo sapiens]
Length = 324
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 6/169 (3%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+++++ ++A + Q +KI+V + + E ++ +FE+FG++
Sbjct: 61 HHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 114
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 115 EDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 163
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 148 IHFHEINNKMVECKKA 163
>gi|50305631|ref|XP_452776.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641909|emb|CAH01627.1| KLLA0C12925p [Kluyveromyces lactis]
Length = 570
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD++ K+F+ GL W+TT+E L F G + E K++ D TG+++GF F+ F+ +
Sbjct: 183 RDIN--KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSV 240
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
+ +K Q ++ ++ + A +EQ KI+V + DV ++ F
Sbjct: 241 DEVVKT-QHILDGKVIDPKRAIP------REEQDKTG----KIFVGGIGPDVRPKEFEEF 289
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
F ++G I + D TG+SRGF Y T + + + F+G Q++ ++A
Sbjct: 290 FSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
>gi|50286689|ref|XP_445774.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525080|emb|CAG58693.1| unnamed protein product [Candida glabrata]
Length = 452
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT++ L F G++EE K++ D TG+++GF F+ F++ + + +K
Sbjct: 123 KMFIGGLNWETTEDGLRDYFSKYGKVEELKIMKDPATGRSRGFGFLTFESASSVDEVVKT 182
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
Q ++ ++ + A +EQ KI+V + DV ++ FF ++G
Sbjct: 183 -QHILDGKVIDPKRAIP------REEQDKTG----KIFVGGIGPDVRPKEFEEFFAQWGT 231
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
I + D TG+SRGF Y T + K + F+G +++ ++AA
Sbjct: 232 IIDAQLMLDKDTGRSRGFGFITYDTPDAVDKVCQNKFIDFKGRKIEIKRAA 282
>gi|410921768|ref|XP_003974355.1| PREDICTED: DAZ-associated protein 1-like [Takifugu rubripes]
Length = 435
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L + F GE+ +C ++ DK T +++GF F+ FK L+
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVRTVLET 71
Query: 168 PQRKVNNRMAS---CQLASVGP----TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
++ R C + P T G K A + +KI+V +P + + +LR
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKSRTKEGWKGSKADSNKSKKIFVGGIPHNCGEPELRD 131
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F RFG + + +D + RGF ++ + +A+ G +++ +KA
Sbjct: 132 YFNRFGAVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKA 188
>gi|302760911|ref|XP_002963878.1| hypothetical protein SELMODRAFT_4662 [Selaginella moellendorffii]
gi|302813190|ref|XP_002988281.1| hypothetical protein SELMODRAFT_4658 [Selaginella moellendorffii]
gi|300144013|gb|EFJ10700.1| hypothetical protein SELMODRAFT_4658 [Selaginella moellendorffii]
gi|300169146|gb|EFJ35749.1| hypothetical protein SELMODRAFT_4662 [Selaginella moellendorffii]
Length = 188
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 5/180 (2%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
+ Q K+F+ G+ W+TT+E L F GE+ E ++ D+ TG+A+GF F+VF A
Sbjct: 2 ETDQGKLFIGGISWETTEEKLKDYFQAYGEVVETVIMRDRTTGRARGFGFVVFSDPNCAD 61
Query: 163 KALKNPQRKVNNRMA---SCQLASVGPTGPGVKEQGAAAQGE-RKIYVSNVPRDVEKEKL 218
+ L + + ++ R+A Q + V G V G A + +KI+V + +V ++
Sbjct: 62 RVLLD-KHTIDGRVAVPRDEQHSVVKANGSAVAGPGGHASSKTKKIFVGGLGSNVTEDDF 120
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
R +FE+FG I + +D T + RGF + T E L + + ++ ++A
Sbjct: 121 RKYFEQFGTITDVVVMYDHATQRPRGFGFITFDTEEAVDNVLHKTFHELKEKMVEVKRAV 180
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GLG + T++ F G I + ++ D T + +GF FI F T +A L
Sbjct: 104 KKIFVGGLGSNVTEDDFRKYFEQFGTITDVVVMYDHATQRPRGFGFITFDTEEAVDNVLH 163
Query: 167 NPQRKVNNRMASCQLA-----SVGP 186
++ +M + A S GP
Sbjct: 164 KTFHELKEKMVEVKRAVPKELSAGP 188
>gi|402867876|ref|XP_003898055.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Papio anubis]
Length = 320
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT E+L S F G + +C ++ D T +++GF F+ + T A+
Sbjct: 14 RKLFIGGLSFETTDETLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVGEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKA 180
>gi|348508134|ref|XP_003441610.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 3
[Oreochromis niloticus]
Length = 351
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L F GE++EC ++ D VT +++GF F+ + + K L
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYAEQAGVEKVLAQ 82
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +F++FG+
Sbjct: 83 NRHELDSKTIDPKVAFP------RRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGK 136
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF ++ + K E ++C+KA
Sbjct: 137 VDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 186
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 111 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 170
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 171 IHFHEINNKMVECKKAQPKEVMTPTG 196
>gi|410730475|ref|XP_003671417.2| hypothetical protein NDAI_0G03970 [Naumovozyma dairenensis CBS 421]
gi|401780235|emb|CCD26174.2| hypothetical protein NDAI_0G03970 [Naumovozyma dairenensis CBS 421]
Length = 607
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 24/220 (10%)
Query: 103 DVSQR--KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA 160
D+S+ K+F+ GL W+TT++ L + F G + E K++ D TG+++GF F+ F+ +
Sbjct: 191 DISKDSCKMFIGGLNWETTEDGLRNYFNKYGNVIELKIMKDGATGRSRGFGFLTFEHPSS 250
Query: 161 AVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
+ +K Q ++ ++ + P KE+ KI+V + DV ++
Sbjct: 251 VDEVVKT-QHILDGKV-------IDPKRSIPKEEQDKI---GKIFVGGIGTDVRPKEFEE 299
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA--- 277
FF +FG I + D TG+SRGF Y + + K + F+G Q++ ++A
Sbjct: 300 FFAQFGTIIDAQLMLDKDTGRSRGFGFITYDSADAVDKVCQNKYIDFKGKQIEVKRAQQR 359
Query: 278 -AEGKNRTSSNSS-------SSNNQAQMMIQKQQQPMLQG 309
+ GK +SNS ++ M Q Q PM+ G
Sbjct: 360 HSHGKPADASNSQMLTPNPMATPGMVNPMGQMYQNPMMPG 399
>gi|359489471|ref|XP_002267504.2| PREDICTED: uncharacterized protein LOC100257521 [Vitis vinifera]
gi|296089004|emb|CBI38707.3| unnamed protein product [Vitis vinifera]
Length = 267
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + KIFV GL W+T ++++ F GEI+E ++ DK TG++KG+ F+ FK AA+
Sbjct: 12 DTTYTKIFVGGLAWETQRDTMRRYFEQFGEIQEAVVITDKNTGRSKGYGFVTFKDPDAAM 71
Query: 163 KALKNPQRKVNNRMASCQLASVGP--TGPGVKEQGA 196
+A +NP ++ R A+C LAS+G T P + GA
Sbjct: 72 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGA 107
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V + + +++ +R +FE+FGEI+ + D TG+S+G+ +K + A +A +
Sbjct: 17 KIFVGGLAWETQRDTMRRYFEQFGEIQEAVVITDKNTGRSKGYGFVTFKDPDAAMRACQN 76
Query: 263 PQKMFEGHQLQCQKAAEGKNRT 284
P + +G + C A+ G ++T
Sbjct: 77 PSPVIDGRRANCNLASLGAHKT 98
>gi|269063720|emb|CAS85145.1| squid, variant F [Blattella germanica]
Length = 297
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT + L F GEIE + D TG+++GFAFIVF +
Sbjct: 55 RD-DDRKLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSI 113
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K L +NN+ + A A G KI+V + D+ + ++ F
Sbjct: 114 DKVLSAGDHVINNKKVDPKKAK-------------ARHG--KIFVGGLVPDLSDDDIKSF 158
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F ++G I + FD T + +GF +++ + ++ L+ P++ G ++ +KA
Sbjct: 159 FAQYGTIVEVEMPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKAT 215
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ DH++ D KIFV GL D + + + S F G I E +
Sbjct: 110 ADSIDKVLSAGDHVINNKKVDPKKAKARHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVE 169
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F++ + + LK+P++ +N + + A+ P
Sbjct: 170 MPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPKP 218
>gi|269063718|emb|CAS85144.1| squid, variant E [Blattella germanica]
Length = 321
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT + L F GEIE + D TG+++GFAFIVF +
Sbjct: 55 RD-DDRKLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSI 113
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K L +NN+ + A A G KI+V + D+ + ++ F
Sbjct: 114 DKVLSAGDHVINNKKVDPKKAK-------------ARHG--KIFVGGLVPDLSDDDIKSF 158
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F ++G I + FD T + +GF +++ + ++ L+ P++ G ++ +KA
Sbjct: 159 FAQYGTIVEVEMPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKAT 215
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ DH++ D KIFV GL D + + + S F G I E +
Sbjct: 110 ADSIDKVLSAGDHVINNKKVDPKKAKARHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVE 169
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F++ + + LK+P++ +N + + A+ P
Sbjct: 170 MPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPKP 218
>gi|164661105|ref|XP_001731675.1| hypothetical protein MGL_0943 [Malassezia globosa CBS 7966]
gi|159105576|gb|EDP44461.1| hypothetical protein MGL_0943 [Malassezia globosa CBS 7966]
Length = 367
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 20/200 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+FV GL WDT +ESL FG G + C ++ D +G+++GFAF+ F K +V A+
Sbjct: 1 MFVGGLNWDTDEESLRRYFGQFGPVTSCTVMRDGASGRSRGFAFVTFSDPK-SVNAVMVR 59
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ ++ ++ + A P EQ +K +V +P+ V ++ + F++FG +
Sbjct: 60 EHFLDGKIIDPKRAIPRP------EQSKT----QKCFVGGLPQTVTQDSFKQLFQQFGHV 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA-AEGK------ 281
+ D TG+ RGF ++ +G L + +G Q++ ++A + G+
Sbjct: 110 LDSTVMMDKDTGRPRGFGFVTFENDDGVENTLAHQPLLLDGKQIEVKRAQSRGQPQPNAA 169
Query: 282 -NRTSSN-SSSSNNQAQMMI 299
NR SS+ + SN QA + +
Sbjct: 170 PNRFSSDPARGSNAQAPLRM 189
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
K FV GL TQ+S F G + + +++DK TG+ +GF F+ F+ L
Sbjct: 84 KCFVGGLPQTVTQDSFKQLFQQFGHVLDSTVMMDKDTGRPRGFGFVTFENDDGVENTL 141
>gi|452824817|gb|EME31817.1| heterogeneous nuclear ribonucleoprotein A1/A3 [Galdieria
sulphuraria]
Length = 345
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 5/177 (2%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+T ++SL + F G GE+ +C ++ DK TG +GF F+ F+ A + +
Sbjct: 32 KVFVGGLSWETGEDSLRAYFEGYGEVADCVIMRDKYTGHPRGFGFVTFQDDSVA-DLVAS 90
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + A P V + + +K++V + E +F++FG
Sbjct: 91 LSHILDGRQVEAKKAV--PKAE-VSTKNETTKTTKKLFVGGISSSCSDEDFLVYFQKFGA 147
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284
+ I +D TGKSRGF + +VE K + P+ + +G ++ K AE K+++
Sbjct: 148 VLDAHIMYDHQTGKSRGFGFITFCSVEAVDKVFQTPRHVIKGKVVEV-KVAEPKHQS 203
>gi|449479907|ref|XP_002196910.2| PREDICTED: RNA-binding protein Musashi homolog 2 isoform 1
[Taeniopygia guttata]
Length = 306
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 6/169 (3%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQP 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+++++ ++A + Q +KI+V + + E ++ +FE+FG++
Sbjct: 61 HHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 114
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 115 EDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 163
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 148 IHFHEINNKMVECKKA 163
>gi|269063722|emb|CAS85146.1| squid, variant G [Blattella germanica]
Length = 274
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT + L F GEIE + D TG+++GFAFIVF +
Sbjct: 55 RD-DDRKLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSI 113
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K L +NN+ + A A G KI+V + D+ + ++ F
Sbjct: 114 DKVLSAGDHVINNKKVDPKKAK-------------ARHG--KIFVGGLVPDLSDDDIKSF 158
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F ++G I + FD T + +GF +++ + ++ L+ P++ G ++ +KA
Sbjct: 159 FAQYGTIVEVEMPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKAT 215
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ DH++ D KIFV GL D + + + S F G I E +
Sbjct: 110 ADSIDKVLSAGDHVINNKKVDPKKAKARHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVE 169
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F++ + + LK+P++ +N + + A+ P
Sbjct: 170 MPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPKP 218
>gi|317419099|emb|CBN81137.1| RNA-binding protein Musashi homolog 1 [Dicentrarchus labrax]
Length = 362
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 92/188 (48%), Gaps = 6/188 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L F GE++EC ++ D VT +++GF F+ + + K L
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYAEQAGVEKVLAQ 82
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +F++FG+
Sbjct: 83 NRHELDSKTIDPKVAFP------RRAQPKLVTRTKKIFVGGLSVNTTIEDVKHYFDQFGK 136
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
++ + FD TT + RGF ++ + K E ++C+KA + T +
Sbjct: 137 VDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMTPTG 196
Query: 288 SSSSNNQA 295
S+ ++
Sbjct: 197 SARGRSRV 204
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 111 KKIFVGGLSVNTTIEDVKHYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 170
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 171 IHFHEINNKMVECKKAQPKEVMTPTG 196
>gi|307110580|gb|EFN58816.1| hypothetical protein CHLNCDRAFT_56910 [Chlorella variabilis]
Length = 949
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT + L + F G ++E + DK TG+ +GF F+VF A K + +
Sbjct: 7 KVFIGGLSWETTDQKLRAYFENYGTVQEAFVSYDKHTGRPRGFGFVVFADPIIADKVI-S 65
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGER--KIYVSNVPRDVEKEKLRGFFERF 225
Q ++ R + A P KE+ AA+ G R K++V + V+++ R +FE F
Sbjct: 66 VQHTIDRREVEAKKALPKDESPVRKEEQAASGGHRTKKVFVGGLAATVDEDTFRAYFEEF 125
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVE 254
G ++ + FD + RGF + E
Sbjct: 126 GLVDDAVVMFDHENKRPRGFGFITFADEE 154
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGAR 257
A+ E K+++ + + +KLR +FE +G ++ + +D TG+ RGF V+ A
Sbjct: 2 AKQEGKVFIGGLSWETTDQKLRAYFENYGTVQEAFVSYDKHTGRPRGFGFVVFADPIIAD 61
Query: 258 KALEEPQKMFEGHQLQCQKA 277
K + Q + +++ +KA
Sbjct: 62 KVISV-QHTIDRREVEAKKA 80
>gi|363807276|ref|NP_001242362.1| uncharacterized protein LOC100793209 [Glycine max]
gi|255636483|gb|ACU18580.1| unknown [Glycine max]
Length = 377
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 8/188 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIF+ GL +TT + FG GEI + ++ D+ TG+ +GF FI + K ++
Sbjct: 43 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEE 102
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +N + ++ P G G+ +KI+V +P +V +++ R FF R+GE
Sbjct: 103 PH-VINGKQ--VEIKRTIPRG----AVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGE 155
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKM-FEGHQLQCQKAAEGKNRTSS 286
++ I D +T +SRGF +++ E L K+ F G Q++ +KA K ++
Sbjct: 156 VKDHQIMRDHSTNRSRGFGFITFESEEAVDDLLSMGNKIDFAGAQVEIKKAEPKKPNSAP 215
Query: 287 NSSSSNNQ 294
SS N
Sbjct: 216 PSSKRYND 223
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
+D +KIFV G+ + T++ F GE+++ +++ D T +++GF FI F++ + A
Sbjct: 125 KDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFESEE-A 183
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGP 189
V L + K++ A ++ P P
Sbjct: 184 VDDLLSMGNKIDFAGAQVEIKKAEPKKP 211
>gi|196010301|ref|XP_002115015.1| hypothetical protein TRIADDRAFT_28865 [Trichoplax adhaerens]
gi|190582398|gb|EDV22471.1| hypothetical protein TRIADDRAFT_28865 [Trichoplax adhaerens]
Length = 210
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T E L F GEI EC ++ D +T +++GF F+ F K L++
Sbjct: 5 KMFIGGLSWMTNTEKLREYFEKYGEITECVIMHDPITKRSRGFGFVTFTDADNVEKVLQS 64
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
K++++ ++A P + Q + +K++V + + E + +FE FG+
Sbjct: 65 GPHKLDDKNIDAKVAY-----PKKQRQKLVTRT-KKVFVGGIATNTTTEDITKYFETFGQ 118
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD +T + RGF ++++ + A KA E +++ +KA
Sbjct: 119 IEDAMLMFDKSTQRHRGFGFVIFESEDSADKACEVHFHEINNKKVEVKKA 168
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV G+ +TT E + F G+IE+ L+ DK T + +GF F++F++ +A KA +
Sbjct: 93 KKVFVGGIATNTTTEDITKYFETFGQIEDAMLMFDKSTQRHRGFGFVIFESEDSADKACE 152
Query: 167 NPQRKVNNRMASCQLA 182
++NN+ + A
Sbjct: 153 VHFHEINNKKVEVKKA 168
>gi|291415465|ref|XP_002723972.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 3
[Oryctolagus cuniculus]
Length = 268
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLMDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGMKEDTEEHHLRDHFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKRRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAST 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|269063712|emb|CAS85141.1| squid, variant B [Blattella germanica]
Length = 317
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT + L F GEIE + D TG+++GFAFIVF +
Sbjct: 55 RD-DDRKLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSI 113
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K L +NN+ + A A G KI+V + D+ + ++ F
Sbjct: 114 DKVLSAGDHVINNKKVDPKKAK-------------ARHG--KIFVGGLVPDLSDDDIKSF 158
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F ++G I + FD T + +GF +++ + ++ L+ P++ G ++ +KA
Sbjct: 159 FAQYGTIVEVEMPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKAT 215
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ DH++ D KIFV GL D + + + S F G I E +
Sbjct: 110 ADSIDKVLSAGDHVINNKKVDPKKAKARHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVE 169
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F++ + + LK+P++ +N + + A+ P
Sbjct: 170 MPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPKP 218
>gi|269063710|emb|CAS85140.1| squid, variant A [Blattella germanica]
Length = 341
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT + L F GEIE + D TG+++GFAFIVF +
Sbjct: 55 RD-DDRKLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSI 113
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K L +NN+ + A A G KI+V + D+ + ++ F
Sbjct: 114 DKVLSAGDHVINNKKVDPKKAK-------------ARHG--KIFVGGLVPDLSDDDIKSF 158
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F ++G I + FD T + +GF +++ + ++ L+ P++ G ++ +KA
Sbjct: 159 FAQYGTIVEVEMPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKAT 215
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ DH++ D KIFV GL D + + + S F G I E +
Sbjct: 110 ADSIDKVLSAGDHVINNKKVDPKKAKARHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVE 169
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F++ + + LK+P++ +N + + A+ P
Sbjct: 170 MPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPKP 218
>gi|157110294|ref|XP_001651038.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878762|gb|EAT42987.1| AAEL005515-PF [Aedes aegypti]
Length = 325
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+T+ + L FG GEIE + D TG+++GFAFIV+K+ +
Sbjct: 32 RD-DDRKLFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKSADSI 90
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +NN+ + A A G KI+V + ++ E+++ F
Sbjct: 91 DKVVAAGDHVINNKKVDPKKAK-------------ARHG--KIFVGGLTTEISDEEIKTF 135
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + + L+ P++ G ++ +KA
Sbjct: 136 FGQFGNIVEVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKAT 192
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
Y ID + AA DH++ D KIFV GL + + E + + F
Sbjct: 84 YKSADSIDKVVAAG-------DHVINNKKVDPKKAKARHGKIFVGGLTTEISDEEIKTFF 136
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G G I E ++ DK + KGF FI F + + + LK P++ ++ + + A+ P
Sbjct: 137 GQFGNIVEVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPKP 195
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 193 EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKT 252
E +RK++V + + ++L+ F ++GEIE+ + D TG+SRGFA VYK+
Sbjct: 27 ESSNVRDDDRKLFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKS 86
Query: 253 VEGARKALEEPQKMFEGHQLQCQKA 277
+ K + + ++ +KA
Sbjct: 87 ADSIDKVVAAGDHVINNKKVDPKKA 111
>gi|390354398|ref|XP_003728323.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 3
[Strongylocentrotus purpuratus]
Length = 366
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 93/199 (46%), Gaps = 8/199 (4%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
AD + K+FV GL W+T+ + L F GE++EC ++ D T +++GF F+ F
Sbjct: 14 ADGNHDPGKMFVGGLSWETSTDGLRKYFCQFGEVKECVIMRDTTTRRSRGFGFVTFSDPA 73
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
++ +V+ + ++A + P +KI+V + + L+
Sbjct: 74 HVETVIQRGTHEVDKKKVDPKVAFPKRSHP------KPVSKTKKIFVGGIAASTTEPHLK 127
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279
FFE++G++E + FD TT + RGF ++ + EE +G ++ +KA
Sbjct: 128 KFFEKYGKVEEVTLMFDRTTNRHRGFGFVIFDNEKTVDSVCEEHFHELDGKLVEVKKAQP 187
Query: 280 GKNRTSSNSSSSNNQAQMM 298
+ N++ N+A MM
Sbjct: 188 KEVMMPQNAAK--NRAAMM 204
>gi|269063716|emb|CAS85143.1| squid, variant D [Blattella germanica]
Length = 294
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
RK+FV GL W+TT + L F GEIE + D TG+++GFAFIVF + K
Sbjct: 57 DDRKLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKV 116
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
L +NN+ + A A G KI+V + D+ + ++ FF +
Sbjct: 117 LSAGDHVINNKKVDPKKAK-------------ARHG--KIFVGGLVPDLSDDDIKSFFAQ 161
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+G I + FD T + +GF +++ + ++ L+ P++ G ++ +KA
Sbjct: 162 YGTIVEVEMPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKAT 215
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ DH++ D KIFV GL D + + + S F G I E +
Sbjct: 110 ADSIDKVLSAGDHVINNKKVDPKKAKARHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVE 169
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F++ + + LK+P++ +N + + A+ P
Sbjct: 170 MPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPKP 218
>gi|269063714|emb|CAS85142.1| squid, variant C [Blattella germanica]
Length = 318
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
RK+FV GL W+TT + L F GEIE + D TG+++GFAFIVF + K
Sbjct: 57 DDRKLFVGGLSWETTDKELRDHFHTYGEIESINVKTDPNTGRSRGFAFIVFSQADSIDKV 116
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
L +NN+ + A A G KI+V + D+ + ++ FF +
Sbjct: 117 LSAGDHVINNKKVDPKKAK-------------ARHG--KIFVGGLVPDLSDDDIKSFFAQ 161
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+G I + FD T + +GF +++ + ++ L+ P++ G ++ +KA
Sbjct: 162 YGTIVEVEMPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKAT 215
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ DH++ D KIFV GL D + + + S F G I E +
Sbjct: 110 ADSIDKVLSAGDHVINNKKVDPKKAKARHGKIFVGGLVPDLSDDDIKSFFAQYGTIVEVE 169
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F++ + + LK+P++ +N + + A+ P
Sbjct: 170 MPFDKTKNQRKGFCFITFESEQVVQELLKSPKQSINGKEVDVKKATPKP 218
>gi|112983696|ref|NP_001037323.1| squid protein homologue [Bombyx mori]
gi|784909|dbj|BAA07210.1| Bmsqd-1 [Bombyx mori]
Length = 287
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT + L FG EIE + TG+++GFAFIVFK ++
Sbjct: 39 RD-DDRKLFVGGLSWETTDKELRDHFGAYREIESINVKTVPNTGRSRGFAFIVFKAPESI 97
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + + +NN+ + A A G KI+V + ++ +++R F
Sbjct: 98 DKVMAAGEHTINNKKVDPKKAK-------------ARHG--KIFVGGLSSEISDDEIRNF 142
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F FG I + FD T + +GF +++ + L+ P++ G ++ ++A
Sbjct: 143 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 199
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV GL + + + + + F G I E ++ DK + KGF FI F++ + LK
Sbjct: 124 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 183
Query: 168 PQRKVNNRMASCQLASVGP 186
P+R + + + A+ P
Sbjct: 184 PKRTIGGKEVDVKRATPKP 202
>gi|350396363|ref|XP_003484529.1| PREDICTED: RNA-binding protein squid-like isoform 1 [Bombus
impatiens]
Length = 314
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ RK+FV GL W+TT + L FG G+IE + D TG+++GFAFIVF ++ K
Sbjct: 51 LNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDK 110
Query: 164 ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223
+ +NN+ V P ++ A G K++V + ++ + ++ FF
Sbjct: 111 IMAAGDHIINNK-------KVDP------KKAKARHG--KVFVGGLSTELSDDDIKHFFS 155
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+FG I + FD T + +GF +++ + + L+ P++ G ++ +KA
Sbjct: 156 QFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKAT 210
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
++K + +D I AA DHI+ D K+FV GL + + + + F
Sbjct: 102 FAKAESLDKIMAAG-------DHIINNKKVDPKKAKARHGKVFVGGLSTELSDDDIKHFF 154
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G I E ++ DK + KGF FI F++ + + LK P++ +N + + A+ P
Sbjct: 155 SQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKATPKP 213
>gi|410915344|ref|XP_003971147.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 2
[Takifugu rubripes]
Length = 407
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 QHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VDDAMLMFDKTTNRHRGFGFITFENEDIVEKVCEIHFHEINNKMVECKKA 185
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++++ L+ DK T + +GF FI F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFENEDIVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|157110298|ref|XP_001651040.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|157110302|ref|XP_001651042.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878764|gb|EAT42989.1| AAEL005515-PD [Aedes aegypti]
gi|108878766|gb|EAT42991.1| AAEL005515-PA [Aedes aegypti]
Length = 280
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+T+ + L FG GEIE + D TG+++GFAFIV+K+ +
Sbjct: 32 RD-DDRKLFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKSADSI 90
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +NN+ + A A G KI+V + ++ E+++ F
Sbjct: 91 DKVVAAGDHVINNKKVDPKKAK-------------ARHG--KIFVGGLTTEISDEEIKTF 135
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + + L+ P++ G ++ +KA
Sbjct: 136 FGQFGNIVEVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKAT 192
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
Y ID + AA DH++ D KIFV GL + + E + + F
Sbjct: 84 YKSADSIDKVVAAG-------DHVINNKKVDPKKAKARHGKIFVGGLTTEISDEEIKTFF 136
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G G I E ++ DK + KGF FI F + + + LK P++ ++ + + A+ P
Sbjct: 137 GQFGNIVEVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPKP 195
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 193 EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKT 252
E +RK++V + + ++L+ F ++GEIE+ + D TG+SRGFA VYK+
Sbjct: 27 ESSNVRDDDRKLFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKS 86
Query: 253 VEGARKALEEPQKMFEGHQLQCQKA 277
+ K + + ++ +KA
Sbjct: 87 ADSIDKVVAAGDHVINNKKVDPKKA 111
>gi|417409049|gb|JAA51051.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 252
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 38 KMFVGGLSWDTSKNDLKDYFSKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 97
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +E++R +F FGE
Sbjct: 98 KEHRLDGRVIDPKKAMAMKKEP-----------VKKIFVGGLNPEATEEEIREYFGEFGE 146
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEG-ARKALE 261
IE + D + K RGF +K E RKALE
Sbjct: 147 IEAIDLPMDPKSHKRRGFVFITFKEEEEPVRKALE 181
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
+KIFV GL + T+E + FG GEIE L +D + K +GF FI FK + V+
Sbjct: 121 KKIFVGGLNPEATEEEIREYFGEFGEIEAIDLPMDPKSHKRRGFVFITFKEEEEPVR 177
>gi|395816795|ref|XP_003781875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Otolemur
garnettii]
Length = 350
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 10/154 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT++ L GE+ +C + D V+G+++GF F++FK + K L+
Sbjct: 83 KMFIGGLSWDTSKRDLTEYLSRFGEVVDCIIKTDPVSGRSRGFGFVLFKDAASVDKVLEL 142
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ K++ ++ Q A +KE+ +K++V + D KE+++ +F FGE
Sbjct: 143 KEHKLDGKLIDPQRAKP------LKEKAPP----KKVFVGGLSPDTSKEQIKDYFGAFGE 192
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D T + RGF Y E +K LE
Sbjct: 193 IENIELPRDRKTNERRGFCFVTYTEGEPVKKLLE 226
>gi|297676076|ref|XP_002815972.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Pongo abelii]
Length = 320
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
QRK+F+ GL ++TT ESL S G + +C ++ D T ++GF F+++ T + A+
Sbjct: 13 QRKLFIGGLSFETTDESLRSHSEQWGMLTDCAVMRDPNTKHSRGFGFVIYATVEEVDTAM 72
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ V P +E +KI+V + D E+ LR +F
Sbjct: 73 NARPHKVDGRV-------VEPNRAVSREDSQRPDAHLTVKKIFVGGIKEDTEEHHLRHYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDQGSGKKRGFAFVTFDDHDSLDKTVIQKYHTVNGHNCEVRKA 180
>gi|209156106|gb|ACI34285.1| DAZ-associated protein 1 [Salmo salar]
Length = 436
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L + F GE+ +C ++ DK T +++GF F+ FK L+
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVRTVLET 71
Query: 168 PQRKVNNRMAS---CQLASVGP----TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
++ R C + P T G K A + +KI+V +P + + +LR
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKVRTKDGWKGSKADSNKSKKIFVGGIPHNCGEPELRE 131
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F RFG + + +D + RGF ++ + +A+ G +++ +KA
Sbjct: 132 YFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKA 188
>gi|410954614|ref|XP_003983958.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Felis catus]
Length = 301
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G I +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGTITDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + ++ A KI+V + D E+ LR +FE++G
Sbjct: 74 ARAHKVDGRVVEPKRAVLRED----SQRPGAHLTVTKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGF + + K + GH + +KA
Sbjct: 130 KIEVIEIMTDQGSGKKRGFPFVTFDDHDSVDKIAIQKYHTVNGHNCEVRKA 180
>gi|157110296|ref|XP_001651039.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|157110300|ref|XP_001651041.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878763|gb|EAT42988.1| AAEL005515-PG [Aedes aegypti]
gi|108878765|gb|EAT42990.1| AAEL005515-PC [Aedes aegypti]
Length = 300
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+T+ + L FG GEIE + D TG+++GFAFIV+K+ +
Sbjct: 32 RD-DDRKLFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKSADSI 90
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +NN+ + A A G KI+V + ++ E+++ F
Sbjct: 91 DKVVAAGDHVINNKKVDPKKAK-------------ARHG--KIFVGGLTTEISDEEIKTF 135
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + + L+ P++ G ++ +KA
Sbjct: 136 FGQFGNIVEVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKAT 192
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ DH++ D KIFV GL + + E + + FG G I E +
Sbjct: 87 ADSIDKVVAAGDHVINNKKVDPKKAKARHGKIFVGGLTTEISDEEIKTFFGQFGNIVEVE 146
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F + + + LK P++ ++ + + A+ P
Sbjct: 147 MPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPKP 195
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 193 EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKT 252
E +RK++V + + ++L+ F ++GEIE+ + D TG+SRGFA VYK+
Sbjct: 27 ESSNVRDDDRKLFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKS 86
Query: 253 VEGARKALEEPQKMFEGHQLQCQKA 277
+ K + + ++ +KA
Sbjct: 87 ADSIDKVVAAGDHVINNKKVDPKKA 111
>gi|340729954|ref|XP_003403258.1| PREDICTED: RNA-binding protein squid-like isoform 2 [Bombus
terrestris]
Length = 314
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ RK+FV GL W+TT + L FG G+IE + D TG+++GFAFIVF ++ K
Sbjct: 51 LNDRKLFVGGLSWETTDKELRDHFGTYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDK 110
Query: 164 ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223
+ +NN+ V P ++ A G K++V + ++ + ++ FF
Sbjct: 111 IMAAGDHIINNK-------KVDP------KKAKARHG--KVFVGGLSTELSDDDIKHFFS 155
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+FG I + FD T + +GF +++ + + L+ P++ G ++ +KA
Sbjct: 156 QFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKAT 210
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
++K + +D I AA DHI+ D K+FV GL + + + + F
Sbjct: 102 FAKAESLDKIMAAG-------DHIINNKKVDPKKAKARHGKVFVGGLSTELSDDDIKHFF 154
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G I E ++ DK + KGF FI F++ + + LK P++ +N + + A+ P
Sbjct: 155 SQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVDVKKATPKP 213
>gi|410036104|ref|XP_525973.4| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Pan
troglodytes]
Length = 371
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 62 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 121
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 122 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 172
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 173 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 228
>gi|449477049|ref|XP_002196403.2| PREDICTED: RNA-binding protein Musashi homolog 1 [Taeniopygia
guttata]
Length = 330
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W TTQE L F GE++EC ++ D +T +++GF F+ F + K L
Sbjct: 1 MFIGGLSWQTTQEGLREYFSQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG++
Sbjct: 61 RHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKV 114
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 115 DDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 163
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 88 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 147
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 148 IHFHEINNKMVECKKAQPKEVMSPTG 173
>gi|357124772|ref|XP_003564071.1| PREDICTED: uncharacterized protein LOC100841108 [Brachypodium
distachyon]
Length = 291
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T E L F G+I E ++ D++TG++KG+ F+ F+ +AA
Sbjct: 19 DTTLTKVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFREPEAAR 78
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGP----GVKEQGAAAQGERKI 204
+A+++P + R A+C +AS+GP P G GA QG +
Sbjct: 79 RAVQDPNPTITGRRANCNIASLGPPRPAQPRGRASPGAHLQGPPPV 124
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + E LR FE++G+I + D TG+S+G+ ++ E AR+A+++
Sbjct: 24 KVFVGGLAWETPSEGLRQHFEQYGDILEAVVITDRLTGRSKGYGFVTFREPEAARRAVQD 83
Query: 263 PQKMFEGHQLQCQKAAEGKNRTS 285
P G + C A+ G R +
Sbjct: 84 PNPTITGRRANCNIASLGPPRPA 106
>gi|156538565|ref|XP_001607438.1| PREDICTED: hypothetical protein LOC100123736 [Nasonia vitripennis]
Length = 395
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ E L FG G + + ++ D VT +++GF FI F +
Sbjct: 51 DPAPGKLFVGGLSWQTSSEKLREYFGMFGTVTDVLIMKDPVTQRSRGFGFITFAEPGSVD 110
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 111 KVLKCPIHTLDGK-------KIDPKHATPKNRAKQANRTKKIFVGGVSQDTSSEEVKAYF 163
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG++E + D T + RGF ++ + + E + +++C+KA
Sbjct: 164 NQFGKVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 218
>gi|348523119|ref|XP_003449071.1| PREDICTED: DAZ-associated protein 1-like [Oreochromis niloticus]
Length = 435
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L + F GE+ +C ++ DK T +++GF F+ FK L+
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVRTVLET 71
Query: 168 PQRKVNNRMAS---CQLASVGP----TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
++ R C + P T G K A + +KI+V +P + + +LR
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKSRTKEGWKGSKADSNKSKKIFVGGIPHNCGEPELRD 131
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F RFG + + +D + RGF ++ + +A+ G +++ +KA
Sbjct: 132 YFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKA 188
>gi|291415463|ref|XP_002723971.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 327
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLMDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGMKEDTEEHHLRDHFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKRRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAST 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|26341844|dbj|BAC34584.1| unnamed protein product [Mus musculus]
Length = 278
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 78 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 131
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 132 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 181
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 106 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 165
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 166 IHFHEINNKMVECKKA 181
>gi|291405742|ref|XP_002719144.1| PREDICTED: musashi 2-like [Oryctolagus cuniculus]
Length = 306
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 6/169 (3%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+++++ ++A + Q +KI+V + + E ++ +FE+FG++
Sbjct: 61 HHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 114
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 115 EDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 163
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 148 IHFHEINNKMVECKKA 163
>gi|67623287|ref|XP_667926.1| UBP1 interacting protein 2a [Cryptosporidium hominis TU502]
gi|54659095|gb|EAL37690.1| UBP1 interacting protein 2a [Cryptosporidium hominis]
Length = 383
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 118/242 (48%), Gaps = 17/242 (7%)
Query: 62 ESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQE 121
E ++ SLL SK+QL+D+++ +A ++ + +R R++ V + + T+ +
Sbjct: 46 EFRNVVSLL---SKEQLVDILSKSAYLYNIIGNACKLIVERSPVSRRVMVRNISFQTSDK 102
Query: 122 SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181
L+ F GEIE+ ++ +K G+++G+ F+ +K+ ++ +K L N +N R +L
Sbjct: 103 VFLNLFEKFGEIEDSTIIREK-NGRSRGYGFVTYKSSES-IKKLFNENLILNGRQLLVKL 160
Query: 182 A-------SVGPTGPGVK-----EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIE 229
A + GP + ++ + ++K+++ N+ E LR F F +IE
Sbjct: 161 AADPFSEFTCGPIDCNKQVLESNQRLTSTIFKKKLFIRNLSESTTNESLRQAFSEFEDIE 220
Query: 230 TGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSS 289
+ D TGKSR + + + K L+ P+++ +G A + K+ +++N
Sbjct: 221 ECFVMRDHNTGKSRKYGFITFNNLGDMMKVLQHPERIVDGKVTFVSLAFKQKDTSNANKK 280
Query: 290 SS 291
S
Sbjct: 281 SD 282
>gi|15292697|gb|AAK92717.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 494
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 25/186 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA------ 161
K+F+ G+ WDT +E L F GE+ E ++ D+ TG+A+GF F+VF A
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 162 --------VKALKNPQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPR 211
V+A K R N + +S+ P+GPG RKI+V +P
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPSGPGRT---------RKIFVGGLPS 117
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
V + + +FE+FG + +D T + RGF Y + E K L + G
Sbjct: 118 SVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKM 177
Query: 272 LQCQKA 277
++ ++A
Sbjct: 178 VEVKRA 183
>gi|115497832|ref|NP_001069922.1| ELAV-like protein 1 [Bos taurus]
gi|261244966|ref|NP_001159666.1| ELAV-like protein 1 [Ovis aries]
gi|73587279|gb|AAI02496.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Bos taurus]
gi|256665397|gb|ACV04844.1| ELAV-like protein 1 [Ovis aries]
gi|296485836|tpg|DAA27951.1| TPA: ELAV-like 1 (Hu antigen R) [Bos taurus]
Length = 326
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR++
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRNM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|390354396|ref|XP_003728322.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 2
[Strongylocentrotus purpuratus]
Length = 410
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 93/199 (46%), Gaps = 8/199 (4%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
AD + K+FV GL W+T+ + L F GE++EC ++ D T +++GF F+ F
Sbjct: 14 ADGNHDPGKMFVGGLSWETSTDGLRKYFCQFGEVKECVIMRDTTTRRSRGFGFVTFSDPA 73
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
++ +V+ + ++A + P +KI+V + + L+
Sbjct: 74 HVETVIQRGTHEVDKKKVDPKVAFPKRSHP------KPVSKTKKIFVGGIAASTTEPHLK 127
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279
FFE++G++E + FD TT + RGF ++ + EE +G ++ +KA
Sbjct: 128 KFFEKYGKVEEVTLMFDRTTNRHRGFGFVIFDNEKTVDSVCEEHFHELDGKLVEVKKAQP 187
Query: 280 GKNRTSSNSSSSNNQAQMM 298
+ N++ N+A MM
Sbjct: 188 KEVMMPQNAAK--NRAAMM 204
>gi|291415461|ref|XP_002723970.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 371
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 12/187 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLMDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGMKEDTEEHHLRDHF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
E++G+IE I D +GK RGFA + + K + + GH + +KA +
Sbjct: 126 EQYGKIEVIEIMTDRGSGKRRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Query: 283 RTSSNSS 289
S++S+
Sbjct: 186 MASTSST 192
>gi|109109574|ref|XP_001086021.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Macaca mulatta]
Length = 267
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ G+ ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIRGMSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYTTVEEVDAAIN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +K +V ++ D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHFTVKKTFVGSIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 DQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKA 180
>gi|366988347|ref|XP_003673940.1| hypothetical protein NCAS_0A10010 [Naumovozyma castellii CBS 4309]
gi|342299803|emb|CCC67559.1| hypothetical protein NCAS_0A10010 [Naumovozyma castellii CBS 4309]
Length = 506
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 98/203 (48%), Gaps = 12/203 (5%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT++ L F G + + K++ D TG+++GF F+ F+ + + +K
Sbjct: 194 KLFIGGLNWETTEDKLKDYFSKYGNVVDLKIMKDNATGRSRGFGFLTFELSSSVDEVVKT 253
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
Q ++ ++ + A + + G KI+V + DV ++ FF ++G
Sbjct: 254 -QHILDGKVIDPKRA--------IPREEQDKTG--KIFVGGIGPDVRPKEFEEFFAQWGT 302
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
I + D TG+SRGF Y + E + + F+G Q++ ++AA + +N
Sbjct: 303 IIDAQLMLDKDTGRSRGFGFITYDSSEAVDRVCQNKYIDFKGKQIEIKRAAPRHMQKGAN 362
Query: 288 SSSSNNQAQMMIQKQQQPMLQGQ 310
+ + Q Q +Q Q M Q Q
Sbjct: 363 NGRNPRQFQNQMQAPPQ-MFQNQ 384
>gi|348508130|ref|XP_003441608.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 1
[Oreochromis niloticus]
Length = 332
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L F GE++EC ++ D VT +++GF F+ + + K L
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYAEQAGVEKVLAQ 82
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +F++FG+
Sbjct: 83 NRHELDSKTIDPKVAFP------RRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGK 136
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF ++ + K E ++C+KA
Sbjct: 137 VDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 186
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 111 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 170
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 171 IHFHEINNKMVECKKA 186
>gi|432858970|ref|XP_004069029.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Oryzias
latipes]
Length = 299
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 93/187 (49%), Gaps = 6/187 (3%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W TTQE L FG GE++EC ++ D VT +++GF F+ + + + L
Sbjct: 1 MFIGGLSWQTTQEGLREYFGKFGEVKECMVMRDPVTKRSRGFGFVTYADQAGVEQVLAQN 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ +++++ ++A P + Q +KI+V + + E ++ +F++FG++
Sbjct: 61 RHELDSKTIDPKVAF--PR----RAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKV 114
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNS 288
+ + FD TT + RGF ++ + K E ++C+KA + T + S
Sbjct: 115 DDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMTPTGS 174
Query: 289 SSSNNQA 295
+ ++
Sbjct: 175 ARGRSRV 181
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 88 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 148 IHFHEINNKMVECKKAQPKEVMTPTG 173
>gi|356560235|ref|XP_003548399.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 351
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 4/127 (3%)
Query: 63 SESISSLLEPYSKDQLIDLIA----AAATKIPLLHDHILETADRDVSQRKIFVHGLGWDT 118
+E + + +P S + ++L AT+ ++ +I D + KIFV GL W+T
Sbjct: 70 TEKVVRIWDPRSGSKTLNLKGHNKFYTATQFQMVGGNINSRQYNDTTSTKIFVGGLAWET 129
Query: 119 TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMAS 178
++++ F GEI E ++ DK TGK+KG+ F+ FK +AA+ A +NP ++ R A+
Sbjct: 130 QRDTMRRYFEQFGEILEAVVITDKNTGKSKGYGFVTFKDPEAAMNACQNPSPIIDGRRAN 189
Query: 179 CQLASVG 185
C +A++G
Sbjct: 190 CNIAAIG 196
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V + + +++ +R +FE+FGEI + D TGKS+G+ +K E A A +
Sbjct: 119 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGKSKGYGFVTFKDPEAAMNACQN 178
Query: 263 PQKMFEGHQLQCQKAAEG--KNRT 284
P + +G + C AA G KNRT
Sbjct: 179 PSPIIDGRRANCNIAAIGANKNRT 202
>gi|327284183|ref|XP_003226818.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Anolis carolinensis]
Length = 386
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 23/197 (11%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 37 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMA 96
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 97 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 147
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG- 280
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 148 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 207
Query: 281 --------KNRTSSNSS 289
+NR SS+S+
Sbjct: 208 EMQTATAQRNRGSSSSN 224
>gi|296188846|ref|XP_002742529.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Callithrix jacchus]
Length = 320
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKPFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDANTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|291389273|ref|XP_002711072.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 320
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 12/187 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
E++G+IE I D +GK R FA + + K + + GH + +KA +
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRSFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Query: 283 RTSSNSS 289
S++S+
Sbjct: 186 MASASST 192
>gi|114577985|ref|XP_001144332.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Pan troglodytes]
Length = 320
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFFGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|157110304|ref|XP_001651043.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878767|gb|EAT42992.1| AAEL005515-PE [Aedes aegypti]
Length = 285
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+T+ + L FG GEIE + D TG+++GFAFIV+K+ +
Sbjct: 32 RD-DDRKLFVGGLSWETSDKELKEHFGQYGEIESINVKTDPNTGRSRGFAFIVYKSADSI 90
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +NN+ V P ++ A G KI+V + ++ E+++ F
Sbjct: 91 DKVVAAGDHVINNK-------KVDP------KKAKARHG--KIFVGGLTTEISDEEIKTF 135
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + + L+ P++ G ++ +KA
Sbjct: 136 FGQFGNIVEVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKAT 192
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ DH++ D KIFV GL + + E + + FG G I E +
Sbjct: 87 ADSIDKVVAAGDHVINNKKVDPKKAKARHGKIFVGGLTTEISDEEIKTFFGQFGNIVEVE 146
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F + + + LK P++ ++ + + A+ P
Sbjct: 147 MPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPKP 195
>gi|388329666|gb|AFK29221.1| musashi-PA [Drosophila buzzatii]
Length = 671
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 7/170 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W T+ E L F G + + ++ D VT +++GF FI F+ K LK
Sbjct: 222 KLFVGGLSWQTSSEKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVDKVLKV 281
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P ++ + + P K + A +KI+V V +D E+++ +F +FG
Sbjct: 282 PIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGA 334
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + D T + RGF ++ + + E + +++C+KA
Sbjct: 335 VEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 384
>gi|390464176|ref|XP_003733182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like
[Callithrix jacchus]
Length = 320
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFDTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 9/190 (4%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
+ A R Q +F+ L ++L F G I CK+ D+ G +KG+ F+ ++T
Sbjct: 140 DPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-HGNSKGYGFVHYET 198
Query: 158 RKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVE 214
+AA +A+K+ VN + + + VG P Q + + IYV N+ DV
Sbjct: 199 DEAASQAIKH----VNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIQLDVT 254
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-PQKMFEGHQLQ 273
+ R FE+FG + + + D TGKSRGF + + E A KA+EE +K F G L
Sbjct: 255 DDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQNLY 314
Query: 274 CQKAAEGKNR 283
+A + R
Sbjct: 315 VGRAQKKHER 324
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 118/332 (35%), Gaps = 77/332 (23%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I+V + D T + + F G + L D+ TGK++GF F+ F + + A KA++
Sbjct: 244 IYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVE-- 301
Query: 169 QRKVNNRMASCQLASVGPTGPG------VKEQGAAAQGER-------KIYVSNVPRDVEK 215
++N + Q VG ++ AA+ E+ +Y+ N+ +V+
Sbjct: 302 --ELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 216 EKLRGFFERFGEIETGPI-------GFD-------------------------------- 236
+KLR F FG I + + G D
Sbjct: 360 DKLRQLFSEFGPITSAKVMRETLAEGADEPEAKDAADAKENVKEDEEAAKTEGDEGDAKA 419
Query: 237 ---ITTGKSRGFAIFVYKTVEGARKALEE-PQKMFEGHQLQCQKAAEGKNRTSSNSSSSN 292
GKS+GF + + A KA+ E Q+M G L A R
Sbjct: 420 DKKPKLGKSKGFGFVCFGNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRK-------- 471
Query: 293 NQAQMMIQKQQQPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGGF---LV 349
NQ + IQ + Q +Q G Q+ + A + G PG P GG
Sbjct: 472 NQLEASIQARNQLRMQQAAAAAGMPQQFMQAPVFYGP-----GSQPGFMPPAGGRGMPFP 526
Query: 350 NPGLINPMVAGALHQGAIPASNVGAMAGSSVL 381
PG+ P V G G PA G G L
Sbjct: 527 QPGMGLPAVQGG-RPGQFPAGYAGQQGGRGGL 557
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V L T+ L F G + ++ D VT ++ G+A++ + T KAL
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALD-- 120
Query: 169 QRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
++N + + + P +++ G QG +++ N+ ++ + L F FG
Sbjct: 121 --ELNYTLIKGRPCRIMWSQRDPALRKTG---QG--NVFIKNLDVAIDNKALHDTFAAFG 173
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-------PQKMFEGHQL 272
I + + D G S+G+ Y+T E A +A++ +K++ GH +
Sbjct: 174 NILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
>gi|74004684|ref|XP_543761.2| PREDICTED: uncharacterized protein LOC608074 isoform 2 [Canis lupus
familiaris]
gi|410968904|ref|XP_003990939.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 1
[Felis catus]
Length = 378
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|74228812|dbj|BAE21894.1| unnamed protein product [Mus musculus]
Length = 379
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|34740329|ref|NP_919223.1| heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens]
gi|397489097|ref|XP_003815573.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 1
[Pan paniscus]
gi|426337836|ref|XP_004032901.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 1
[Gorilla gorilla gorilla]
gi|51338779|sp|P51991.2|ROA3_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A3;
Short=hnRNP A3
gi|34327775|gb|AAQ63629.1| heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens]
gi|62822160|gb|AAY14709.1| unknown [Homo sapiens]
gi|85567495|gb|AAI12028.1| Heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens]
gi|109730489|gb|AAI13471.1| HNRPA3 protein [Homo sapiens]
gi|119631469|gb|EAX11064.1| heterogeneous nuclear ribonucleoprotein A3, isoform CRA_b [Homo
sapiens]
gi|119631471|gb|EAX11066.1| heterogeneous nuclear ribonucleoprotein A3, isoform CRA_b [Homo
sapiens]
gi|410261478|gb|JAA18705.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261480|gb|JAA18706.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261482|gb|JAA18707.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261484|gb|JAA18708.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261486|gb|JAA18709.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261488|gb|JAA18710.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261490|gb|JAA18711.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261492|gb|JAA18712.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410261494|gb|JAA18713.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410351651|gb|JAA42429.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
gi|410351653|gb|JAA42430.1| heterogeneous nuclear ribonucleoprotein A3 [Pan troglodytes]
Length = 378
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|402888739|ref|XP_003907708.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 [Papio
anubis]
Length = 378
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|332209432|ref|XP_003253815.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like
[Nomascus leucogenys]
Length = 378
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|296190480|ref|XP_002743214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Callithrix jacchus]
Length = 320
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+ + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSMDKIVIQKYHTVNGHNCEVRKA 180
>gi|329664164|ref|NP_001192358.1| heterogeneous nuclear ribonucleoprotein A3 [Bos taurus]
gi|426220819|ref|XP_004004609.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 [Ovis aries]
Length = 380
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|31559916|ref|NP_666242.2| heterogeneous nuclear ribonucleoprotein A3 isoform a [Mus musculus]
gi|37674277|ref|NP_932758.1| heterogeneous nuclear ribonucleoprotein A3 isoform a [Mus musculus]
gi|37693507|ref|NP_937765.1| heterogeneous nuclear ribonucleoprotein A3 isoform a [Rattus
norvegicus]
gi|162329577|ref|NP_001104764.1| heterogeneous nuclear ribonucleoprotein A3 isoform a [Rattus
norvegicus]
gi|311272700|ref|XP_003133549.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
1 [Sus scrofa]
gi|30316201|sp|Q8BG05.1|ROA3_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein A3;
Short=hnRNP A3
gi|51316556|sp|Q6URK4.1|ROA3_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein A3;
Short=hnRNP A3
gi|23274033|gb|AAH23908.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|23468331|gb|AAH38364.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|34327777|gb|AAQ63630.1| heterogeneous nuclear ribonucleoprotein A3 variant a [Rattus
norvegicus]
gi|40787633|gb|AAH64824.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|51980308|gb|AAH81878.1| Heterogeneous nuclear ribonucleoprotein A3 [Rattus norvegicus]
gi|58801248|dbj|BAD89508.1| heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|74143970|dbj|BAE41285.1| unnamed protein product [Mus musculus]
gi|148695241|gb|EDL27188.1| mCG1305, isoform CRA_b [Mus musculus]
gi|149022310|gb|EDL79204.1| rCG27231, isoform CRA_c [Rattus norvegicus]
gi|149022311|gb|EDL79205.1| rCG27231, isoform CRA_c [Rattus norvegicus]
gi|149022312|gb|EDL79206.1| rCG27231, isoform CRA_c [Rattus norvegicus]
gi|149022313|gb|EDL79207.1| rCG27231, isoform CRA_c [Rattus norvegicus]
Length = 379
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|297264391|ref|XP_001096533.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
3 [Macaca mulatta]
Length = 336
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|402864694|ref|XP_003896588.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Papio
anubis]
Length = 320
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT+ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTEESLRSHFEQWGTLADCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDCFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|410915342|ref|XP_003971146.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 1
[Takifugu rubripes]
Length = 388
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 QHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VDDAMLMFDKTTNRHRGFGFITFENEDIVEKVCEIHFHEINNKMVECKKA 185
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++++ L+ DK T + +GF FI F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFENEDIVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|426241336|ref|XP_004014547.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T ++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKGSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|387018108|gb|AFJ51172.1| Heterogeneous nuclear ribonucleoprotein A3-like [Crotalus
adamanteus]
Length = 225
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 20/197 (10%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGALTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
FE++G+IET + D +GK RGFA + + K + + GH + +KA +
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 282 N------RTSSNSSSSN 292
+ S SSSSN
Sbjct: 184 EMQTATAQRSRGSSSSN 200
>gi|148707568|gb|EDL39515.1| mCG1047313 [Mus musculus]
Length = 316
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + AL
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVAAALC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|296490667|tpg|DAA32780.1| TPA: mCG1035404-like [Bos taurus]
Length = 380
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|118482964|gb|ABK93394.1| unknown [Populus trichocarpa]
Length = 294
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + KIFV GL W+T ++++ F GEI E ++ DK TG++KG+ F+ FK +AAV
Sbjct: 21 DTTYTKIFVGGLAWETQRDAMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAV 80
Query: 163 KALKNPQRKVNNRMASCQLASVG 185
+A +NP ++ R A+C LAS+G
Sbjct: 81 RACQNPSPVIDGRRANCNLASLG 103
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V + + +++ +R +FE+FGEI + D TG+S+G+ +K E A +A +
Sbjct: 26 KIFVGGLAWETQRDAMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAVRACQN 85
Query: 263 PQKMFEGHQLQCQKAAEG--KNR 283
P + +G + C A+ G KNR
Sbjct: 86 PSPVIDGRRANCNLASLGGQKNR 108
>gi|403258685|ref|XP_003921883.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 [Saimiri
boliviensis boliviensis]
Length = 378
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|296220327|ref|XP_002756261.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like
[Callithrix jacchus]
Length = 304
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|38328278|gb|AAH62198.1| Hnrpa3 protein [Mus musculus]
Length = 318
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|328724864|ref|XP_001951157.2| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
1 [Acyrthosiphon pisum]
Length = 442
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
Q K+FV GL W+T QESL F GE+ +C ++ + +G+++GF F+ F L
Sbjct: 12 QGKLFVGGLSWETQQESLQRYFNRYGEVIDCVVMKNSESGRSRGFGFVTFADPNNVNVVL 71
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+N ++ R + P P ++ + K+++ +P +V + LR FF R+
Sbjct: 72 QNGPHVLDGRTIDPK-----PCNPRTLQKPKRSSSYPKVFLGGLPSNVTETDLRTFFSRY 126
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G++ I +D KSRGF ++ + + + E G Q++ +KA
Sbjct: 127 GKVMEVVIMYDQEKKKSRGFGFLSFEDDDAVDRCVAEHFVNLSGKQVEIKKA 178
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 15/211 (7%)
Query: 102 RDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
RD S R+ IF+ L D +++ F G I CK+ +D+ G +KG+AF+ F+
Sbjct: 97 RDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIALDE-NGNSKGYAFVHFE 155
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVG---PTGPGVKEQGAAAQGERKIYVSNVPRDV 213
T++AA +A++ KVN + S + VG +++ G A +YV N D+
Sbjct: 156 TQEAANRAIE----KVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYTNLYVKNFRDDI 211
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-PQKMFEGHQL 272
++ R FE+ G+I + + D +GKSRGF Y+T E A+KA+E +K F+ ++
Sbjct: 212 SDDEFRDLFEQCGKIVSCVVMRD-DSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRM 270
Query: 273 QCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQ 303
+A + R++ + Q M+++ Q
Sbjct: 271 YVARAQKKSERSALLRRQYEQKKQEMMKRFQ 301
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V D + + F G+I C ++ D +GK++GF F+ ++T +AA KA++
Sbjct: 202 LYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDD-SGKSRGFGFVSYETHEAAQKAVETL 260
Query: 169 QRKVNN--RMASCQLASVGPTGPGVKEQGAAAQGER-------KIYVSNVPRDVEKEKLR 219
K + RM + ++ Q + E +YV N+ ++ KLR
Sbjct: 261 NEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLR 320
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
F FG I + + D G SRGF + + E A KA+ E
Sbjct: 321 QEFANFGTITSAKVMSD-EKGISRGFGFVCFSSPEEATKAVTE 362
>gi|354472305|ref|XP_003498380.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like
[Cricetulus griseus]
Length = 423
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 79 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 138
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 139 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 189
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 190 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 245
>gi|148682805|gb|EDL14752.1| mCG117968 [Mus musculus]
Length = 317
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + C ++ D T +++GF F+ + T + A+
Sbjct: 11 RKLFIGGLSFETTDESLRSHFEQWGTLTNCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 70
Query: 167 NPQRKVNNRMASCQ--LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + ++ PG A +KI+V + D E+ LR +FE+
Sbjct: 71 ARPHKVDGRVVEPKRTVSREDSQRPG------AHLTVKKIFVGGIKEDTEEHHLRDYFEQ 124
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 125 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 177
>gi|387539574|gb|AFJ70414.1| heterogeneous nuclear ribonucleoprotein A3 [Macaca mulatta]
Length = 378
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|194390304|dbj|BAG61914.1| unnamed protein product [Homo sapiens]
Length = 271
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 16/156 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 1 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFERF 225
+ K+++++ + A A +G+ +K++V + D +E+++ +F F
Sbjct: 61 EHKLDSKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAF 107
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 108 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 143
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L++ D + +K+FV GL DT++E + FG GE
Sbjct: 50 AASVDKVLELKEHKLDSKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 109
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 110 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 161
>gi|328724866|ref|XP_003248272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
2 [Acyrthosiphon pisum]
Length = 432
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
Q K+FV GL W+T QESL F GE+ +C ++ + +G+++GF F+ F L
Sbjct: 12 QGKLFVGGLSWETQQESLQRYFNRYGEVIDCVVMKNSESGRSRGFGFVTFADPNNVNVVL 71
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+N ++ R + P P ++ + K+++ +P +V + LR FF R+
Sbjct: 72 QNGPHVLDGRTIDPK-----PCNPRTLQKPKRSSSYPKVFLGGLPSNVTETDLRTFFSRY 126
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G++ I +D KSRGF ++ + + + E G Q++ +KA
Sbjct: 127 GKVMEVVIMYDQEKKKSRGFGFLSFEDDDAVDRCVAEHFVNLSGKQVEIKKA 178
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 13/189 (6%)
Query: 102 RDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
RD S RK IF+ L Q+ L F G I CK+V+D+ G++KG+ F+ F+
Sbjct: 91 RDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDE-NGQSKGYGFVHFE 149
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE-RKIYVSNVPRDVEK 215
+ A +A++ K+NN + ++ VG P + + A + + +YV N P + +
Sbjct: 150 KEECAERAIE----KINNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDN 205
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQC 274
EKL+ F FGEI++ + D GKS+GF Y + A A+ K EG L C
Sbjct: 206 EKLKEMFSEFGEIKSACVMKD-NEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYC 264
Query: 275 QKAAEGKNR 283
+A + R
Sbjct: 265 ARAQRKEER 273
>gi|209879389|ref|XP_002141135.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556741|gb|EEA06786.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 408
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 110/226 (48%), Gaps = 19/226 (8%)
Query: 61 PESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQ 120
P+ + + +L P SK+QL+D++A A + + ++ R++ V + ++T+
Sbjct: 34 PQIDKLKHILFPLSKEQLVDILARCAFAFDEVRKACVAIFEKSPVSRRVMVRNISFNTSD 93
Query: 121 ESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQ 180
++ + F GEI++ +V DK +GK++G+ F+ FK+ + ++ L + ++ R +
Sbjct: 94 KAFVDLFCTFGEIDDAIIVRDK-SGKSRGYGFVTFKSTE-SIHKLFDSSLCLDGRQLLLK 151
Query: 181 LA-----------SVGPTG----PGVKEQGAAAQ--GERKIYVSNVPRDVEKEKLRGFFE 223
LA S P + + + + +RK++V N+ EKL+ F
Sbjct: 152 LAADPYAEFTCGRSQSPKDLYERNDINDSNTSFKVISKRKLFVRNLSDTTTAEKLKEVFS 211
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEG 269
+FG +E I D TG S+ +K + G KAL++ Q++ G
Sbjct: 212 QFGNVEDCVILTDSNTGLSKRCGFVTFKNISGVMKALKQQQQIING 257
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
T+ + +S+RK+FV L TT E L F G +E+C ++ D TG +K F+ FK
Sbjct: 181 NTSFKVISKRKLFVRNLSDTTTAEKLKEVFSQFGNVEDCVILTDSNTGLSKRCGFVTFKN 240
Query: 158 RKAAVKALKNPQRKVNNRMASCQLA 182
+KALK Q+ +N ++A LA
Sbjct: 241 ISGVMKALKQQQQIINGKVAFISLA 265
>gi|291391798|ref|XP_002712349.1| PREDICTED: mCG1035404-like [Oryctolagus cuniculus]
Length = 378
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHSCEVKKA 201
>gi|379056197|dbj|BAL68140.1| RNA-binding protein Musashi homolog 1 Long [Danio rerio]
Length = 349
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 8/191 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L F GE++E ++ D VT +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +F++FG+
Sbjct: 81 TRHELDSKTIDPKVAF------PRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
++ + FD TT + RGF ++ + K E ++C+KA S
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ--PKEVMSP 192
Query: 288 SSSSNNQAQMM 298
+ SS +A++M
Sbjct: 193 TGSSRGRARVM 203
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 109 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>gi|449299976|gb|EMC95989.1| hypothetical protein BAUCODRAFT_511421 [Baudoinia compniacensis
UAMH 10762]
Length = 454
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 11/155 (7%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W+TT ESL + F GE+ EC ++ D TG+++GF F+ FK K V +
Sbjct: 1 MFIGGLNWETTDESLKNYFSQFGEVVECTVMRDGATGRSRGFGFLTFKDPK-VVNTVMVK 59
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ ++ ++ + A P +++ A KI+V V ++ ++ FF RFG +
Sbjct: 60 EHTLDGKLIDPKRAI-----PRDEQERTA-----KIFVGGVSQEASQDDFANFFRRFGNV 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263
+ D TG+ RGF + + + LE P
Sbjct: 110 LDATLMMDKETGRPRGFGFVTFDSEAAVDRTLESP 144
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 102 RDVSQR--KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
RD +R KIFV G+ + +Q+ + F G + + L++DK TG+ +GF F+ F +
Sbjct: 76 RDEQERTAKIFVGGVSQEASQDDFANFFRRFGNVLDATLMMDKETGRPRGFGFVTFDSEA 135
Query: 160 AAVKALKNP 168
A + L++P
Sbjct: 136 AVDRTLESP 144
>gi|326918700|ref|XP_003205626.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like
[Meleagris gallopavo]
Length = 264
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 16/156 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 1 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A A +G+ +K++V + D +E+++ +F F
Sbjct: 61 EHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAF 107
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 108 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 143
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 50 AASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 109
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 110 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 161
>gi|417409800|gb|JAA51391.1| Putative rna-binding protein elav/hu rrm superfamily, partial
[Desmodus rotundus]
Length = 336
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 17 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 76
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR++
Sbjct: 77 NYVTAKDAERAV-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRNM 127
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 128 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 181
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 256 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 312
>gi|410915348|ref|XP_003971149.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 4
[Takifugu rubripes]
Length = 350
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 QHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VDDAMLMFDKTTNRHRGFGFITFENEDIVEKVCEIHFHEINNKMVECKKA 185
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++++ L+ DK T + +GF FI F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFENEDIVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|426247087|ref|XP_004017318.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 12/174 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 15 KLFIGGLSFETTNESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFFE 223
KV+ R+ + A V + + G +KI+V + D E+ LR +FE
Sbjct: 75 RPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 126
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ +KIFV G+ DT + L F G+IE +++ D+ +GK +GFAF+ F + K
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 164 ALKNPQRKVNNRMASCQL 181
+ VN +C++
Sbjct: 162 IVIQKYHTVNGH--NCEV 177
>gi|291243889|ref|XP_002741832.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like
[Saccoglossus kowalevskii]
Length = 398
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F GEI +C ++ D T K++GF FI +K A++
Sbjct: 13 RKLFIGGLNYETTDDSLKGHFSEWGEIVDCVVMKDPNTKKSRGFGFITYKRASMVDDAMR 72
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGA---AAQGERKIYVSNVPRDVEKEKLRGFFE 223
+ K++ R V P +E+ A +KI+V + D ++ LR +F
Sbjct: 73 SRPHKIDGR-------EVEPKRAVAREESGNPLAHMLVKKIFVGGIKEDTSEDHLRDYFS 125
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
++G IE+ + D TGK RGFA + + K + H+ + +KA
Sbjct: 126 KYGSIESVDVISDKDTGKKRGFAFVTFDDHDPVDKIVGLKYHTINDHKSEVKKAV 180
>gi|358388987|gb|EHK26580.1| hypothetical protein TRIVIDRAFT_77860 [Trichoderma virens Gv29-8]
Length = 525
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT +SL F GE+ EC ++ D +G+++GF F+ FK K +
Sbjct: 113 KMFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSSSGRSRGFGFLTFKDPKTVNIVM-- 170
Query: 168 PQRKVNNRMASCQLASVGPT-GPGVKEQGAAAQGER----KIYVSNVPRDVEKEKLRGFF 222
V ++ S+ P P + + A + E+ KI+V V +D ++ R +F
Sbjct: 171 ----VKEHFLDGKIVSLLPCHNPCIDPKRAIPRDEQEKTSKIFVGGVSQDTTDQEFREYF 226
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG + + D TG+ RGF +++ G + P ++ G ++ +KA
Sbjct: 227 AQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVDACINVPLEI-HGKPIEVKKA 280
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 60 EPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTT 119
+P++ +I + E + +++ L+ P + D KIFV G+ DTT
Sbjct: 162 DPKTVNIVMVKEHFLDGKIVSLLPC---HNPCIDPKRAIPRDEQEKTSKIFVGGVSQDTT 218
Query: 120 QESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASC 179
+ F G + + L++DK TG+ +GF F+ F++ +A V A N +++ +
Sbjct: 219 DQEFREYFAQFGRVVDATLMMDKDTGRPRGFGFVTFES-EAGVDACINVPLEIHGKPIEV 277
Query: 180 QLASVGPTGPGVKEQGAAAQGE 201
+ A P G +E+ AA +G+
Sbjct: 278 KKAQ--PRGNLREEEEAAKRGK 297
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 196 AAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYK 251
A+A+ + K+++ + + + LR +F +FGE+ + D ++G+SRGF +K
Sbjct: 106 ASAKEDGKMFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSSSGRSRGFGFLTFK 161
>gi|242069255|ref|XP_002449904.1| hypothetical protein SORBIDRAFT_05g025410 [Sorghum bicolor]
gi|241935747|gb|EES08892.1| hypothetical protein SORBIDRAFT_05g025410 [Sorghum bicolor]
Length = 450
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 7/176 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT ++ LL F GE+EE ++ D+ TG+++GF FI+F A K +
Sbjct: 7 KLFIGGISWDTNEDHLLKYFKKYGEVEEAIVMRDRATGRSRGFGFIMF-ADPAVAKHVIM 65
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQG------ERKIYVSNVPRDVEKEKLRGF 221
+ ++ RM + A + +A G +KI+V + +V KE +
Sbjct: 66 EKHMIDGRMVEAKKAIARDDHHSLNNIHGSAHGLQRPKHRKKIFVGGLASNVTKEDVIKH 125
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
F++FG I + +D T + RGF Y + + +AL + + +G ++ ++A
Sbjct: 126 FKQFGTIIDVVVVYDHHTQRPRGFGFITYDSEDAVHRALIKTFQKLKGKMVEVKRA 181
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
++KIFV GL + T+E ++ F G I + +V D T + +GF FI + + A +AL
Sbjct: 105 RKKIFVGGLASNVTKEDVIKHFKQFGTIIDVVVVYDHHTQRPRGFGFITYDSEDAVHRAL 164
Query: 166 KNPQRKVNNRMASCQLA 182
+K+ +M + A
Sbjct: 165 IKTFQKLKGKMVEVKRA 181
>gi|47217429|emb|CAG00789.1| unnamed protein product [Tetraodon nigroviridis]
Length = 476
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 7/160 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L + F GE+ +C ++ DK T +++GF F+ FK L+
Sbjct: 1 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVRTVLET 60
Query: 168 PQRKVNNRMAS---CQLASVGP----TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
++ R C + P T G K A + +KI+V +P + + +LR
Sbjct: 61 KPHNLDGRNIDPKPCTPRGMQPEKSRTKEGWKGSKADSNKSKKIFVGGIPHNCGEPELRD 120
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+F RFG + + +D + RGF ++ + +A+
Sbjct: 121 YFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAV 160
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +E LR +F ++GE+ I D TT +SRGF +K R LE
Sbjct: 1 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVRTVLET 60
Query: 263 PQKMFEGHQL 272
+G +
Sbjct: 61 KPHNLDGRNI 70
>gi|213511640|ref|NP_001134235.1| Heterogeneous nuclear ribonucleoprotein A1 [Salmo salar]
gi|209731708|gb|ACI66723.1| Heterogeneous nuclear ribonucleoprotein A1 [Salmo salar]
gi|303664010|gb|ADM16122.1| Heterogeneous nuclear ribonucleoprotein A1 [Salmo salar]
Length = 228
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 8/173 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL F G + +C ++ D +++GF F + A++
Sbjct: 13 RKLFIGGLSFETTDESLREHFEQWGSLTDCVVMRDPANKRSRGFGFATYSGVNEVDAAME 72
Query: 167 NPQRKVNNRMASCQ--LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + ++ + PG A +KI+V + D E LR +FE+
Sbjct: 73 ARPHKVDGRLVEPKRAVSREDSSRPG------AHVTVKKIFVGGIKEDTEDSHLRDYFEQ 126
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FG+IE I D T+GK RGFA + + + + + GH + +KA
Sbjct: 127 FGKIEVIDIMTDRTSGKKRGFAFVTFDDHDAVDRIVIQKYHTLNGHNCEVRKA 179
>gi|58332792|ref|NP_001011470.1| musashi RNA-binding protein 1 [Xenopus (Silurana) tropicalis]
gi|147899394|ref|NP_001081302.1| nrp-1B [Xenopus laevis]
gi|214632|gb|AAA49920.1| pot. RNA-binding protein (nrp-1B); putative [Xenopus laevis]
gi|52221204|gb|AAH82667.1| LOC397764 protein [Xenopus laevis]
gi|56970642|gb|AAH88603.1| musashi homolog 1 [Xenopus (Silurana) tropicalis]
Length = 340
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L F G+++EC ++ D +T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 81 SRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF ++ + K + ++C+KA
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFEGEDIVEKVCDIHFHEINNKMVECKKA 184
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEGEDIVEKVCD 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>gi|71895177|ref|NP_001026424.1| heterogeneous nuclear ribonucleoprotein A1 [Gallus gallus]
gi|53130302|emb|CAG31480.1| hypothetical protein RCJMB04_6o1 [Gallus gallus]
Length = 368
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + + + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +F ++G
Sbjct: 74 ARPHKVDGRVVEPKRA----VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFGQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
++S
Sbjct: 190 SAS 192
>gi|302850790|ref|XP_002956921.1| hypothetical protein VOLCADRAFT_107445 [Volvox carteri f.
nagariensis]
gi|300257802|gb|EFJ42046.1| hypothetical protein VOLCADRAFT_107445 [Volvox carteri f.
nagariensis]
Length = 444
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D K+F+ GL W+TT E L + F G + E + ++ G+ +GF F+VF++ + A
Sbjct: 3 DKQSAKVFIGGLSWETTGEKLRAYFENFGSVREAFVSYNRNNGRPRGFGFVVFESPEVAD 62
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K + + ++ R + A P K+QG+A Q +KI+V + V++ +LR F
Sbjct: 63 KVVAT-KHTIDRREVEAKKAVPKEETPEEKQQGSAPQRTKKIFVGGLAPSVDEAQLRQHF 121
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVY 250
+FG +E + +D + RGF +
Sbjct: 122 SQFGTVEDAVVMYDHENKRPRGFGFVTF 149
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K+++ + + EKLR +FE FG + + ++ G+ RGF V+++ E A K +
Sbjct: 8 KVFIGGLSWETTGEKLRAYFENFGSVREAFVSYNRNNGRPRGFGFVVFESPEVADKVVAT 67
Query: 263 PQKMFEGHQLQCQKA 277
+ + +++ +KA
Sbjct: 68 -KHTIDRREVEAKKA 81
>gi|241953399|ref|XP_002419421.1| cleavage and polyadenylation factor CF I component, putative;
nuclear polyadenylated RNA-binding protein, putative
[Candida dubliniensis CD36]
gi|223642761|emb|CAX43015.1| cleavage and polyadenylation factor CF I component, putative
[Candida dubliniensis CD36]
Length = 505
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 11/172 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK F+ GL WDTT+E+L+S F G I + ++ D TG+++GF F+ F+ K +V AL
Sbjct: 186 RKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAK-SVDALL 244
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ ++ ++ + A + ++ G KI+V + V +E+ FF +FG
Sbjct: 245 KDRHVLDGKLIDPKRA--------ISKEDQEKVG--KIFVGGIDPMVTEEEFDNFFSQFG 294
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+I + D TG+SRGF Y + K +G ++ ++AA
Sbjct: 295 KIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEVKRAA 346
>gi|429892782|gb|AGA18936.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 7 KLFVDGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 66
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 67 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGK 120
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 121 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 177
Query: 288 SSSSNN 293
+SNN
Sbjct: 178 GQNSNN 183
>gi|388329663|gb|AFK29218.1| musashi-PB, partial [Drosophila buzzatii]
Length = 636
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 7/170 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W T+ E L F G + + ++ D VT +++GF FI F+ K LK
Sbjct: 187 KLFVGGLSWQTSSEKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVDKVLKV 246
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P ++ + + P K + A +KI+V V +D E+++ +F +FG
Sbjct: 247 PIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGA 299
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + D T + RGF ++ + + E + +++C+KA
Sbjct: 300 VEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 349
>gi|444509175|gb|ELV09196.1| Heterogeneous nuclear ribonucleoprotein A1 [Tupaia chinensis]
Length = 346
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T ++GF F+ T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQRGTLTDCVVMRDPNTKHSRGFGFVTSATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + + GA E KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRA---VSREDSQRPGAHLTVE-KIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFKTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|293332557|ref|NP_001169821.1| uncharacterized protein LOC100383713 [Zea mays]
gi|224031839|gb|ACN34995.1| unknown [Zea mays]
gi|413944112|gb|AFW76761.1| RNA-binding region-containing protein 1 [Zea mays]
Length = 332
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T E L F G+I E ++ D++TG++KG+ F+ F+ +AA
Sbjct: 26 DTTLTKVFVGGLAWETPSEGLRQHFERYGDILEAVVITDRLTGRSKGYGFVTFREPEAAR 85
Query: 163 KALKNPQRKVNNRMASCQLASVG---PTGPGVKEQG 195
+A+++P + R A+C +AS+G PT PGV +G
Sbjct: 86 RAVQDPNPTIAGRRANCNIASLGPPRPTQPGVAGRG 121
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + E LR FER+G+I + D TG+S+G+ ++ E AR+A+++
Sbjct: 31 KVFVGGLAWETPSEGLRQHFERYGDILEAVVITDRLTGRSKGYGFVTFREPEAARRAVQD 90
Query: 263 PQKMFEGHQLQCQKAAEGKNRTS 285
P G + C A+ G R +
Sbjct: 91 PNPTIAGRRANCNIASLGPPRPT 113
>gi|346469143|gb|AEO34416.1| hypothetical protein [Amblyomma maculatum]
Length = 314
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 16/195 (8%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A ++ Q KIFV GL W+TTQESLL+ F GE+ +C ++ ++ TG+++GF F+ F+
Sbjct: 2 ARQNEEQGKIFVGGLSWETTQESLLNYFSRFGEVVDCVVMCNE-TGRSRGFGFVTFRDPS 60
Query: 160 AAVKALKNPQRKVNNRMA---SCQ--------LASVGPTGPGVKEQGAAAQGERKIYVSN 208
L +++ R SC GP GV+ +G++ KI+V
Sbjct: 61 CVATVLAGGPHQLDGRTVDPKSCNPRGASRPGGGGGGPGARGVRTKGSST----KIFVGG 116
Query: 209 VPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE 268
+P V + L FF +G++ I +D +SRGF +++ E + +
Sbjct: 117 LPATVTETDLHAFFSEYGKVTETLIMYDQEQRRSRGFGFISFESEEPVNQLTAQRYVDIS 176
Query: 269 GHQLQCQKAAEGKNR 283
G Q++C++A ++R
Sbjct: 177 GKQVECKRAEPKESR 191
>gi|109109572|ref|XP_001086138.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 2 [Macaca mulatta]
Length = 320
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ G+ ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIRGMSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYTTVEEVDAAIN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +K +V ++ D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHFTVKKTFVGSIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 DQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKA 180
>gi|355750652|gb|EHH54979.1| hypothetical protein EGM_04098, partial [Macaca fascicularis]
Length = 326
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|149521754|ref|XP_001512512.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Ornithorhynchus anatinus]
gi|338723434|ref|XP_003364726.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Equus
caballus]
gi|426231939|ref|XP_004009994.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Ovis
aries]
gi|2547076|dbj|BAA22860.1| A+U-rich element RNA binding factor [Homo sapiens]
Length = 271
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 16/156 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 1 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A A +G+ +K++V + D +E+++ +F F
Sbjct: 61 EHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAF 107
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 108 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 143
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 50 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 109
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 110 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 161
>gi|357459939|ref|XP_003600251.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
gi|355489299|gb|AES70502.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
Length = 481
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 31/188 (16%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF------------ 155
K+F+ G+ WDT +E L F GE+ E ++ D+ TG+A+GF F+VF
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 156 ------KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNV 209
+T +A ++ Q+ +N + S Q G GPG +KI+V +
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQNINRQTGSVQ----GSPGPGRT---------KKIFVGGL 113
Query: 210 PRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEG 269
P + + + +F++FG I + +D T + RGF Y + E + L + G
Sbjct: 114 PSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNG 173
Query: 270 HQLQCQKA 277
++ ++A
Sbjct: 174 KMVEVKRA 181
>gi|344284648|ref|XP_003414077.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like
[Loxodonta africana]
Length = 372
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSTVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRHYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGF + + K + + GH + +K
Sbjct: 130 KIEVIEIMTDQGSGKKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKV 180
>gi|383416553|gb|AFH31490.1| heterogeneous nuclear ribonucleoprotein A3 [Macaca mulatta]
Length = 272
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|410976792|ref|XP_003994797.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Felis catus]
Length = 380
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 95/197 (48%), Gaps = 8/197 (4%)
Query: 111 VHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR 170
+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F + K L +
Sbjct: 42 IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRH 101
Query: 171 KVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIET 230
+++++ ++A + Q +KI+V + + E ++ +FE+FG+++
Sbjct: 102 ELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 155
Query: 231 GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSS 290
+ FD TT + RGF +++ + K E ++C+KA S + S
Sbjct: 156 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ--PKEVMSPTGS 213
Query: 291 SNNQAQMMIQKQQQPML 307
+ ++++M ML
Sbjct: 214 ARGRSRVMPYGMDAFML 230
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 127 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 186
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 187 IHFHEINNKMVECKKAQPKEVMSPTG 212
>gi|354497787|ref|XP_003511000.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like
[Cricetulus griseus]
gi|344249844|gb|EGW05948.1| Heterogeneous nuclear ribonucleoprotein D-like [Cricetulus griseus]
Length = 271
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 16/156 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 1 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A A +G+ +K++V + D +E+++ +F F
Sbjct: 61 EHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAF 107
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 108 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 143
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 50 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 109
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 110 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 161
>gi|223646910|gb|ACN10213.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
gi|223672773|gb|ACN12568.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 336
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L+
Sbjct: 83 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDSNTGRSRGFGFILFKEAGSVDKVLEQ 142
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R + A P +KI+V + + +E +R +F FGE
Sbjct: 143 KEHRLDGRQIDPKKAMAMKKEPA-----------KKIFVGGLNPEATEETIREYFGTFGE 191
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE+ + D K RGF +K +K LE
Sbjct: 192 IESIELPVDPKFKKRRGFIFITFKEEATVKKCLE 225
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 190 GVKEQGAA-------AQGER---KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239
GV + GAA ++GE K++V + D K+ L+ +F +FGE+ I D T
Sbjct: 60 GVTQNGAAEGGQINASKGEDDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDSNT 119
Query: 240 GKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G+SRGF ++K K LE+ + +G Q+ +KA
Sbjct: 120 GRSRGFGFILFKEAGSVDKVLEQKEHRLDGRQIDPKKA 157
>gi|410950299|ref|XP_003981845.1| PREDICTED: ELAV-like protein 1 [Felis catus]
Length = 336
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 17 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 76
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 77 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 127
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 128 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 181
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 256 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 312
>gi|355685803|gb|AER97853.1| ELAV-like protein 1 [Mustela putorius furo]
Length = 343
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 25 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 84
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 85 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 135
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 136 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 189
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 264 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 320
>gi|291389620|ref|XP_002711397.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 3
[Oryctolagus cuniculus]
Length = 268
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T ++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKCSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEEHHLRDHFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|355565001|gb|EHH21490.1| hypothetical protein EGK_04572, partial [Macaca mulatta]
Length = 357
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|224064856|ref|XP_002301585.1| predicted protein [Populus trichocarpa]
gi|222843311|gb|EEE80858.1| predicted protein [Populus trichocarpa]
Length = 479
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 8/177 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT +E L F GE+ E ++ D+ TG+A+GF F+VF A + +K
Sbjct: 7 KLFIGGISWDTNEERLKDYFQSFGEVVEAVIMKDRTTGRARGFGFVVFSDPSIAERVIK- 65
Query: 168 PQRKVNNRMASCQLA------SVGPTGPGVKEQGAAAQGE-RKIYVSNVPRDVEKEKLRG 220
+ ++ RM + A ++ G G+ G +KI+V + V + R
Sbjct: 66 EKHSIDGRMVEAKKAVPRDDQNMLSRNSGGSIHGSPGPGRTKKIFVGGLASTVTESDFRK 125
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F++FG I + +D T + RGF Y + E K L + G ++ ++A
Sbjct: 126 YFDQFGLITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLMKTFHELNGKMVEVKRA 182
>gi|440912092|gb|ELR61691.1| hypothetical protein M91_00743 [Bos grunniens mutus]
Length = 266
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 5/170 (2%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL ++TT ESL S F G + +C +V+D T +++GF F+ + T + A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDC-VVMDPNTKRSRGFGFVTYATVEEVDAAMNA 73
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+K++ R+ + + A ++ A +KI+V + D E+ LR +FE++G+
Sbjct: 74 RPQKMDGRVVAPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 129
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 179
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ +KIFV G+ DT + L F G+IE +++ D+ +GK +GFAF+ F + K
Sbjct: 101 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 160
Query: 164 ALKNPQRKVNNRMASCQL 181
+ VN +C++
Sbjct: 161 IVIQKYHTVNGH--NCEV 176
>gi|296084992|emb|CBI28407.3| unnamed protein product [Vitis vinifera]
Length = 401
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 7/176 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT ++ L F GE+ E ++ D+ TG+A+GF F+VF A + +K
Sbjct: 7 KLFIGGISWDTNEDRLKDYFSNYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVIK- 65
Query: 168 PQRKVNNRMASCQLA------SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
+ ++ RM + A S+ G RKI+V + V + + +
Sbjct: 66 EKHNIDGRMVEAKKAVPKDDQSILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
F++FG I + +D T + RGF Y++ E K L + G ++ ++A
Sbjct: 126 FDQFGAITDVVVMYDHNTQRPRGFGFITYESEEAVDKVLLKTFHELNGKMVEVKRA 181
>gi|61806598|ref|NP_001013534.1| RNA-binding protein Musashi homolog 1 [Danio rerio]
gi|60688517|gb|AAH90916.1| Musashi homolog 1 (Drosophila) [Danio rerio]
gi|182888902|gb|AAI64361.1| Msi1 protein [Danio rerio]
gi|379056199|dbj|BAL68141.1| RNA-binding protein Musashi homolog 1 Short [Danio rerio]
Length = 330
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 8/191 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L F GE++E ++ D VT +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +F++FG+
Sbjct: 81 TRHELDSKTIDPKVAFP------RRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
++ + FD TT + RGF ++ + K E ++C+KA S
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ--PKEVMSP 192
Query: 288 SSSSNNQAQMM 298
+ SS +A++M
Sbjct: 193 TGSSRGRARVM 203
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K +
Sbjct: 109 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>gi|170051646|ref|XP_001861859.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
gi|167872815|gb|EDS36198.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
Length = 308
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 15/174 (8%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
RK+FV GL W+T+ + L FG G+IE + D TG+++GFAFIV+K+ + K
Sbjct: 38 DDRKLFVGGLSWETSDKELKEHFGQYGDIESINVKTDPNTGRSRGFAFIVYKSADSIDKV 97
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
+ +NN+ + A A G KI+V + ++ ++++ FF +
Sbjct: 98 VAAGDHVINNKKVDPKKAK-------------ARHG--KIFVGGLTTEISDDEIKTFFGQ 142
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
FG I + FD + +GF + + + + L+ P++ G ++ +KA
Sbjct: 143 FGNIVDVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKAT 196
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ DH++ D KIFV GL + + + + + FG G I + +
Sbjct: 91 ADSIDKVVAAGDHVINNKKVDPKKAKARHGKIFVGGLTTEISDDEIKTFFGQFGNIVDVE 150
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F + + + LK P++ ++ + + A+ P
Sbjct: 151 MPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPKP 199
>gi|170585852|ref|XP_001897696.1| RNA recognition motif containing protein [Brugia malayi]
gi|312066609|ref|XP_003136351.1| RNA recognition domain-containing protein containing protein [Loa
loa]
gi|158595003|gb|EDP33580.1| RNA recognition motif containing protein, putative [Brugia malayi]
gi|307768478|gb|EFO27712.1| RNA recognition domain-containing protein containing protein [Loa
loa]
gi|402585724|gb|EJW79663.1| RNA-binding protein [Wuchereria bancrofti]
Length = 300
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV G+ +D T E L F GE+ + ++ D+ TG+++GFAF+ F T +A AL
Sbjct: 38 KKIFVGGIAYDVTNEDLSQYFSQYGEVAQAQVKYDRNTGRSRGFAFVEFTTGEACRAAL- 96
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
N R S + G V+ + A ++ +K++V +P D +E+LR FE++G
Sbjct: 97 ------NAREQSLK-------GKTVEVKPAKSRENKKVFVGGLPADHPEEELRAHFEQYG 143
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++E FD T R FA V++ E A +A P++MF + +KA
Sbjct: 144 KVEDIEWPFDKQTKARRNFAFIVFEEEEAAERASATPKQMFGSRECDVKKA 194
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 190 GVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFV 249
G+K+ G + ++KI+V + DV E L +F ++GE+ + +D TG+SRGFA
Sbjct: 27 GLKDLGKGNE-DKKIFVGGIAYDVTNEDLSQYFSQYGEVAQAQVKYDRNTGRSRGFAFVE 85
Query: 250 YKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNR 283
+ T E R AL ++ +G ++ + A +N+
Sbjct: 86 FTTGEACRAALNAREQSLKGKTVEVKPAKSRENK 119
>gi|429892780|gb|AGA18935.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNN 293
+SNN
Sbjct: 179 GQNSNN 184
>gi|224087249|ref|XP_002190976.1| PREDICTED: ELAV-like protein 1-like [Taeniopygia guttata]
gi|449266784|gb|EMC77794.1| ELAV-like protein 1 [Columba livia]
Length = 326
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRSM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITNFNGHK 171
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|30680456|ref|NP_850539.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332641086|gb|AEE74607.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA------ 161
K+F+ G+ WDT +E L F GE+ E ++ D+ TG+A+GF F+VF A
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 162 --------VKALKNPQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPR 211
V+A K R N + +S+ P GPG RKI+V +P
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT---------RKIFVGGLPS 117
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
V + + +FE+FG + +D T + RGF Y + E K L + G
Sbjct: 118 SVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKM 177
Query: 272 LQCQKA 277
++ ++A
Sbjct: 178 VEVKRA 183
>gi|351701320|gb|EHB04239.1| ELAV-like protein 1, partial [Heterocephalus glaber]
Length = 329
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 10 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 69
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 70 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 120
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 121 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 174
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 249 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 305
>gi|332027282|gb|EGI67366.1| RNA-binding protein squid [Acromyrmex echinatior]
Length = 306
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 15/173 (8%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
RK+FV GL W+TT + L F G+IE + D TG+++GFAFIVF +A K +
Sbjct: 46 DRKLFVGGLSWETTDKELREHFSTYGDIESINVKTDPNTGRSRGFAFIVFAKAEALDKIM 105
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+NN+ V P ++ A G KI+V + ++ + ++ FF +F
Sbjct: 106 SAGDHVINNK-------KVDP------KKAKARHG--KIFVGGLSTELSDDDIKNFFSQF 150
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
G I + FD T + +GF +++ + + L+ P++ G + +KA
Sbjct: 151 GNIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKAVDVKKAT 203
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A A KI DH++ D KIFV GL + + + + + F G I E +
Sbjct: 98 AEALDKIMSAGDHVINNKKVDPKKAKARHGKIFVGGLSTELSDDDIKNFFSQFGNIVEVE 157
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ DK + KGF FI F++ + + LK P++ +N + + A+
Sbjct: 158 MPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKAVDVKKAT 203
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 193 EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKT 252
E G +Q +RK++V + + ++LR F +G+IE+ + D TG+SRGFA V+
Sbjct: 38 ENGQDSQEDRKLFVGGLSWETTDKELREHFSTYGDIESINVKTDPNTGRSRGFAFIVFAK 97
Query: 253 VEGARKALEEPQKMFEGHQLQCQKA 277
E K + + ++ +KA
Sbjct: 98 AEALDKIMSAGDHVINNKKVDPKKA 122
>gi|1209409|emb|CAA90716.1| hnRNP protein [Chironomus tentans]
Length = 297
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT++ L FG GEI+ + D TG+++GFAFIV+K+ +
Sbjct: 36 RD-DDRKLFVGGLSWETTEKELRDHFGQYGEIDSINVKTDPTTGRSRGFAFIVYKSADSI 94
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +NN+ + A TG KI+V + ++ +++R +
Sbjct: 95 DKVVAAGDHIINNKKVDPKKAKA-RTG--------------KIFVGGLIPEISDDEIRAY 139
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + + F + + + L+ P++ G ++ +KA
Sbjct: 140 FAQFGNIVEMEMPFDKQKNQRKAFCFITFDSETVVNELLKTPKQTISGKEVDVKKAT 196
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ DHI+ D KIFV GL + + + + + F G I E +
Sbjct: 91 ADSIDKVVAAGDHIINNKKVDPKKAKARTGKIFVGGLIPEISDDEIRAYFAQFGNIVEME 150
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + K F FI F + + LK P++ ++ + + A+ P
Sbjct: 151 MPFDKQKNQRKAFCFITFDSETVVNELLKTPKQTISGKEVDVKKATPKP 199
>gi|89271354|emb|CAJ83458.1| DAZ associated protein 1 [Xenopus (Silurana) tropicalis]
Length = 347
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 9/196 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 PQRKVNNRMAS---CQLASVGP--TGP--GVKEQGAAAQGER--KIYVSNVPRDVEKEKL 218
++ R C + P T P G +++G + R KI+V +P + + +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPREGWQQKGPRTENSRSNKIFVGGIPHNCGETEL 130
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
R +F+RFG + + +D + RGF ++ + +A+ G +++ ++A
Sbjct: 131 REYFKRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 190
Query: 279 EGKNRTSSNSSSSNNQ 294
+++ + +NQ
Sbjct: 191 PRDSKSQTPGPPGSNQ 206
>gi|148673673|gb|EDL05620.1| mCG50656 [Mus musculus]
Length = 271
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>gi|126347016|ref|XP_001368514.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like, partial
[Monodelphis domestica]
Length = 356
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 11 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 70
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 71 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 121
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 122 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 177
>gi|68465675|ref|XP_723199.1| likely RNA binding protein [Candida albicans SC5314]
gi|68465968|ref|XP_723052.1| likely RNA binding protein [Candida albicans SC5314]
gi|46445066|gb|EAL04337.1| likely RNA binding protein [Candida albicans SC5314]
gi|46445222|gb|EAL04492.1| likely RNA binding protein [Candida albicans SC5314]
Length = 475
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 11/172 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK F+ GL WDTT+E+L+S F G I + ++ D TG+++GF F+ F+ K +V AL
Sbjct: 162 RKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAK-SVDALL 220
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ ++ ++ + A + ++ G KI+V + V +E+ FF +FG
Sbjct: 221 KDRHVLDGKLIDPKRA--------ISKEDQEKVG--KIFVGGIDPMVTEEEFDNFFSQFG 270
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+I + D TG+SRGF Y + K +G ++ ++AA
Sbjct: 271 KIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEVKRAA 322
>gi|6648193|gb|AAF21191.1|AC013483_15 putative RNA-binding protein [Arabidopsis thaliana]
Length = 492
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA------ 161
K+F+ G+ WDT +E L F GE+ E ++ D+ TG+A+GF F+VF A
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 162 --------VKALKNPQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPR 211
V+A K R N + +S+ P GPG RKI+V +P
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT---------RKIFVGGLPS 117
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
V + + +FE+FG + +D T + RGF Y + E K L + G
Sbjct: 118 SVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKM 177
Query: 272 LQCQKA 277
++ ++A
Sbjct: 178 VEVKRA 183
>gi|73986922|ref|XP_854218.1| PREDICTED: ELAV-like protein 1 isoform 1 [Canis lupus familiaris]
gi|301773126|ref|XP_002921957.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Ailuropoda
melanoleuca]
gi|344299314|ref|XP_003421331.1| PREDICTED: ELAV-like protein 1 [Loxodonta africana]
gi|281349989|gb|EFB25573.1| hypothetical protein PANDA_010904 [Ailuropoda melanoleuca]
Length = 326
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|297269736|ref|XP_002799946.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Macaca mulatta]
Length = 273
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ G+ ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIRGMSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYTTVEEVDAAIN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +K +V ++ D E+ LR +F+++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHFTVKKTFVGSIKEDTEEHHLRDYFDQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKA 180
>gi|291389618|ref|XP_002711396.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 327
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T ++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKCSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDHFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|291389616|ref|XP_002711395.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 371
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T ++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKCSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDHFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK RGFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|148233348|ref|NP_001084040.1| musashi RNA-binding protein 1 [Xenopus laevis]
gi|214630|gb|AAA49919.1| pot. RNA-binding protein (nrp-1B); putative [Xenopus laevis]
Length = 347
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L F G+++EC ++ D +T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 81 SRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF ++ + K + ++C+KA
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFEGEDIVEKICDIHFHEINNKMVECKKA 184
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEGEDIVEKICD 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>gi|296216773|ref|XP_002754712.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Callithrix jacchus]
Length = 320
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVRYAAVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI++ + D E+ LR +FE++G
Sbjct: 74 ARSHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFIGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEMIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|357138050|ref|XP_003570611.1| PREDICTED: uncharacterized protein LOC100846923 [Brachypodium
distachyon]
Length = 315
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T L F GEI E ++ D+ TG++KG+ F+ F+ ++A
Sbjct: 36 DTTLTKVFVGGLAWETPSTGLHDHFREYGEILEAVVITDRETGRSKGYGFVTFRDPESAR 95
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQG 200
+A++NP + R A+C +AS+GP P + G A +G
Sbjct: 96 QAVQNPNPVIAGRRANCNIASMGPPRPSPQRSGRAPRG 133
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + L F +GEI + D TG+S+G+ ++ E AR+A++
Sbjct: 41 KVFVGGLAWETPSTGLHDHFREYGEILEAVVITDRETGRSKGYGFVTFRDPESARQAVQN 100
Query: 263 PQKMFEGHQLQCQKAAEGKNRTSSNSS 289
P + G + C A+ G R S S
Sbjct: 101 PNPVIAGRRANCNIASMGPPRPSPQRS 127
>gi|74004700|ref|XP_862045.1| PREDICTED: uncharacterized protein LOC608074 isoform 11 [Canis
lupus familiaris]
gi|410968906|ref|XP_003990940.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 2
[Felis catus]
Length = 356
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|157277969|ref|NP_444493.1| heterogeneous nuclear ribonucleoprotein A3 isoform c [Mus musculus]
gi|162329579|ref|NP_001104765.1| heterogeneous nuclear ribonucleoprotein A3 isoform b [Rattus
norvegicus]
gi|335303045|ref|XP_003359613.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
2 [Sus scrofa]
gi|25991929|gb|AAN76992.1|AF463524_1 ribonucleoprotein heterogeneous nuclear ribonucleoprotein A3 [Mus
musculus]
gi|23274114|gb|AAH23828.1| Hnrpa3 protein [Mus musculus]
gi|34327779|gb|AAQ63631.1| heterogeneous nuclear ribonucleoprotein A3 variant b [Rattus
norvegicus]
gi|111599310|gb|AAI16251.1| Hnrpa3 protein [Mus musculus]
gi|111599547|gb|AAI16252.1| Hnrpa3 protein [Mus musculus]
gi|148695243|gb|EDL27190.1| mCG1305, isoform CRA_d [Mus musculus]
gi|148695244|gb|EDL27191.1| mCG1305, isoform CRA_d [Mus musculus]
gi|148703315|gb|EDL35262.1| mCG48756 [Mus musculus]
gi|149022302|gb|EDL79196.1| rCG27231, isoform CRA_a [Rattus norvegicus]
gi|149022303|gb|EDL79197.1| rCG27231, isoform CRA_a [Rattus norvegicus]
gi|149022304|gb|EDL79198.1| rCG27231, isoform CRA_a [Rattus norvegicus]
gi|149022305|gb|EDL79199.1| rCG27231, isoform CRA_a [Rattus norvegicus]
gi|187957410|gb|AAI58039.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
gi|187957412|gb|AAI57920.1| Heterogeneous nuclear ribonucleoprotein A3 [Mus musculus]
Length = 357
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|410915346|ref|XP_003971148.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 3
[Takifugu rubripes]
Length = 328
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 QHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VDDAMLMFDKTTNRHRGFGFITFENEDIVEKVCEIHFHEINNKMVECKKA 185
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++++ L+ DK T + +GF FI F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFENEDIVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|351709863|gb|EHB12782.1| Heterogeneous nuclear ribonucleoprotein A3 [Heterocephalus glaber]
Length = 392
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 99 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 158
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 159 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 209
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 210 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 265
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 31/154 (20%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFDFVTY----------- 83
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
SC P P + RK+++ + + + LR FE++G
Sbjct: 84 -----------SCVEEGHDPKEP---------EQLRKLFIGGLSFETTDDSLREHFEKWG 123
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+ + D T +SRGF Y VE A+
Sbjct: 124 TLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 157
>gi|148695240|gb|EDL27187.1| mCG1305, isoform CRA_a [Mus musculus]
Length = 351
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|397489099|ref|XP_003815574.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 2
[Pan paniscus]
gi|426337838|ref|XP_004032902.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform 2
[Gorilla gorilla gorilla]
gi|119631468|gb|EAX11063.1| heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a [Homo
sapiens]
gi|119631470|gb|EAX11065.1| heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a [Homo
sapiens]
gi|194375464|dbj|BAG56677.1| unnamed protein product [Homo sapiens]
gi|221046256|dbj|BAH14805.1| unnamed protein product [Homo sapiens]
Length = 356
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|197098694|ref|NP_001125266.1| heterogeneous nuclear ribonucleoprotein A3 [Pongo abelii]
gi|55727504|emb|CAH90507.1| hypothetical protein [Pongo abelii]
Length = 355
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|238880917|gb|EEQ44555.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 475
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 11/172 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK F+ GL WDTT+E+L+S F G I + ++ D TG+++GF F+ F+ K +V AL
Sbjct: 162 RKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAK-SVDALL 220
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ ++ ++ + A + ++ G KI+V + V +E+ FF +FG
Sbjct: 221 KDRHVLDGKLIDPKRA--------ISKEDQEKVG--KIFVGGIDPMVTEEEFDNFFSQFG 270
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+I + D TG+SRGF Y + K +G ++ ++AA
Sbjct: 271 KIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEVKRAA 322
>gi|54647597|gb|AAH84959.1| Msi1h protein [Xenopus laevis]
Length = 321
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TTQE L F G+++EC ++ D +T +++GF F+ F + K L
Sbjct: 21 KMFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 81 SRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGK 134
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF ++ + K + ++C+KA
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFEGEDIVEKICDIHFHEINNKMVECKKA 184
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F+ K
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEGEDIVEKICD 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>gi|395837290|ref|XP_003791571.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 [Otolemur
garnettii]
Length = 347
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|348580545|ref|XP_003476039.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Cavia
porcellus]
Length = 355
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAISREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|297829340|ref|XP_002882552.1| hypothetical protein ARALYDRAFT_478119 [Arabidopsis lyrata subsp.
lyrata]
gi|297328392|gb|EFH58811.1| hypothetical protein ARALYDRAFT_478119 [Arabidopsis lyrata subsp.
lyrata]
Length = 495
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA------ 161
K+F+ G+ WDT +E L F GE+ E ++ D+ TG+A+GF F+VF A
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 162 --------VKALKNPQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPR 211
V+A K R N + +S+ P GPG RKI+V +P
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT---------RKIFVGGLPS 117
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
V + + +FE+FG + +D T + RGF Y + E K L + G
Sbjct: 118 SVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKM 177
Query: 272 LQCQKA 277
++ ++A
Sbjct: 178 VEVKRA 183
>gi|255585793|ref|XP_002533576.1| RNA binding protein, putative [Ricinus communis]
gi|223526553|gb|EEF28811.1| RNA binding protein, putative [Ricinus communis]
Length = 284
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 14/213 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL T + L F G+++E +V+DK TG ++GF F+ F+ AA A ++
Sbjct: 7 KLFVGGLNSKTDGDYLNLHFSKYGQVKETLIVMDKETGSSRGFGFVTFEDHSAADTAFRD 66
Query: 168 PQ----RKVNNRMAS----CQLASVGPTGPGVKEQGAAAQGE-----RKIYVSNVPRDVE 214
+KV+ + A+ C + T ++ G +KI+V +P D+
Sbjct: 67 QHFILGKKVDVKWATPRNPCHNSQEQNTIDPIQSNGDENDNRIELRTKKIFVGGLPHDIS 126
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274
E+ + FF FG + + ++ TG+SRGF + + + A L + Q++
Sbjct: 127 NEEFKDFFSTFGTVRDAVVMYNGVTGRSRGFGFVTFDSEDSADTVLRNKYYQLKDCQIEV 186
Query: 275 QKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPML 307
K A+ ++ S S N + + P L
Sbjct: 187 -KMAKPRSENDKQSQSHNQMVPYYLYGSEIPSL 218
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
++ +KIFV GL D + E F G + + ++ + VTG+++GF F+ F + +A
Sbjct: 110 ELRTKKIFVGGLPHDISNEEFKDFFSTFGTVRDAVVMYNGVTGRSRGFGFVTFDSEDSAD 169
Query: 163 KALKNPQRKVNNRMASCQL 181
L+N + + CQ+
Sbjct: 170 TVLRNKYYQ----LKDCQI 184
>gi|449266230|gb|EMC77309.1| Heterogeneous nuclear ribonucleoprotein A3 like protein 2, partial
[Columba livia]
Length = 356
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 11 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 70
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 71 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLREY 121
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 122 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 177
>gi|429892778|gb|AGA18934.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNN 293
+SNN
Sbjct: 179 GQNSNN 184
>gi|126323791|ref|XP_001366151.1| PREDICTED: ELAV-like protein 1 [Monodelphis domestica]
Length = 326
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|429892774|gb|AGA18932.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 417
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 4 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 63
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 64 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGK 117
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 118 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 174
Query: 288 SSSSNN 293
+SNN
Sbjct: 175 GQNSNN 180
>gi|403257202|ref|XP_003921219.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Saimiri boliviensis boliviensis]
Length = 299
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL + F G + +C ++ T +++GF FI + T + AL
Sbjct: 14 RKLFIGGLSFETTDESLRTHFEQWGTLTDCVVMKHPNTKRSRGFGFITYATVEEVDAALN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A + ++ A +KI V + D E+ LR +FE++G
Sbjct: 74 AKPHKVDGRVVEPKRAVLRED----SQRPGAHLTVKKISVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFNDHDSMDKIVIQKYHTVNGHNCEVRKA 180
>gi|301773128|ref|XP_002921958.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Ailuropoda
melanoleuca]
Length = 325
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 245 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 301
>gi|195438186|ref|XP_002067018.1| GK24781 [Drosophila willistoni]
gi|194163103|gb|EDW78004.1| GK24781 [Drosophila willistoni]
Length = 422
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFGRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNNQA 295
+SNN A
Sbjct: 179 GQNSNNSA 186
>gi|351697839|gb|EHB00758.1| Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3
[Heterocephalus glaber]
Length = 236
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 10/174 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIQGLSFETTDESLRSCFEQWGMLMDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQG---AAAQGERKIYVSNVPRDVEKEKLRGFFE 223
KV R+ V P +E A +KI+V + D E+ LR +FE
Sbjct: 74 ARLHKVGGRV-------VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 126
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 127 QCGKIEVIEIITDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|18398061|ref|NP_566321.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16930693|gb|AAL32012.1|AF436830_1 AT3g07810/F17A17_15 [Arabidopsis thaliana]
gi|23297627|gb|AAN12995.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332641085|gb|AEE74606.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 494
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA------ 161
K+F+ G+ WDT +E L F GE+ E ++ D+ TG+A+GF F+VF A
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 162 --------VKALKNPQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPR 211
V+A K R N + +S+ P GPG RKI+V +P
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT---------RKIFVGGLPS 117
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
V + + +FE+FG + +D T + RGF Y + E K L + G
Sbjct: 118 SVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKM 177
Query: 272 LQCQKA 277
++ ++A
Sbjct: 178 VEVKRA 183
>gi|429892776|gb|AGA18933.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNN 293
+SNN
Sbjct: 179 GQNSNN 184
>gi|429892772|gb|AGA18931.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 7 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 66
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 67 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGK 120
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 121 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 177
Query: 288 SSSSNN 293
+SNN
Sbjct: 178 GQNSNN 183
>gi|390354400|ref|XP_001199490.2| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 1
[Strongylocentrotus purpuratus]
Length = 318
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 93/199 (46%), Gaps = 8/199 (4%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
AD + K+FV GL W+T+ + L F GE++EC ++ D T +++GF F+ F
Sbjct: 14 ADGNHDPGKMFVGGLSWETSTDGLRKYFCQFGEVKECVIMRDTTTRRSRGFGFVTFSDPA 73
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
++ +V+ + ++A + P +KI+V + + L+
Sbjct: 74 HVETVIQRGTHEVDKKKVDPKVAFPKRSHP------KPVSKTKKIFVGGIAASTTEPHLK 127
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279
FFE++G++E + FD TT + RGF ++ + EE +G ++ +KA
Sbjct: 128 KFFEKYGKVEEVTLMFDRTTNRHRGFGFVIFDNEKTVDSVCEEHFHELDGKLVEVKKAQP 187
Query: 280 GKNRTSSNSSSSNNQAQMM 298
+ N++ N+A MM
Sbjct: 188 KEVMMPQNAAK--NRAAMM 204
>gi|359320431|ref|XP_532379.3| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein Musashi homolog
2 isoform 1 [Canis lupus familiaris]
Length = 328
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ ESL F GEI +C ++ + T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPESLRDYFSKFGEIXKCLVLRNPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|429892784|gb|AGA18937.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 7 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 66
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 67 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGK 120
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 121 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 177
Query: 288 SSSSNN 293
+SNN
Sbjct: 178 GQNSNN 183
>gi|291401095|ref|XP_002716927.1| PREDICTED: mCG1035404-like isoform 1 [Oryctolagus cuniculus]
Length = 377
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRAVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHSCEVKKA 201
>gi|147791134|emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera]
Length = 464
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 25/192 (13%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK--- 159
D Q K+F+ G+ W+T+++ L FG GE+ + ++ DK TG+ +GF F+VF
Sbjct: 2 DSDQGKLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILD 61
Query: 160 --------------AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIY 205
A +AL +++ ++R + A G VK +KI+
Sbjct: 62 RVLQEKHIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVK--------TKKIF 113
Query: 206 VSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQK 265
V +P + +E R +FE FG + + +D +T + RGF + T + + L +
Sbjct: 114 VGGLPPTLSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFH 173
Query: 266 MFEGHQLQCQKA 277
G Q++ ++A
Sbjct: 174 DLNGKQVEVKRA 185
>gi|195052284|ref|XP_001993272.1| GH13720 [Drosophila grimshawi]
gi|193900331|gb|EDV99197.1| GH13720 [Drosophila grimshawi]
Length = 421
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPANVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFGRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNNQA 295
+SNN A
Sbjct: 179 GQNSNNSA 186
>gi|260942727|ref|XP_002615662.1| hypothetical protein CLUG_04544 [Clavispora lusitaniae ATCC 42720]
gi|238850952|gb|EEQ40416.1| hypothetical protein CLUG_04544 [Clavispora lusitaniae ATCC 42720]
Length = 527
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 19/174 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT+E L+S F GEI + ++ D TG+++GF F+ FK +A + +K
Sbjct: 164 KMFIGGLNWDTTEEGLVSYFSKYGEILDYTIMKDASTGRSRGFGFLTFKDPRAVDEVIK- 222
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGER----KIYVSNVPRDVEKEKLRGFFE 223
+ + +L + + A A+ E+ KI+V + V + FF
Sbjct: 223 -----KDHILDGKL---------IDPKRAIAREEQDKVGKIFVGGIDPLVNERDFNDFFS 268
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG I + D TG+SRGF Y + E + +G ++ ++A
Sbjct: 269 QFGHIIDAQLMIDKDTGRSRGFGFITYDSPEAVDRVCVNKYLTLKGKAMEVKRA 322
>gi|366992097|ref|XP_003675814.1| hypothetical protein NCAS_0C04600 [Naumovozyma castellii CBS 4309]
gi|342301679|emb|CCC69450.1| hypothetical protein NCAS_0C04600 [Naumovozyma castellii CBS 4309]
Length = 581
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 101/208 (48%), Gaps = 17/208 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT++ L + F G + E K++ D TG+++GF F+ F+ + + +K
Sbjct: 197 KMFIGGLNWETTEDGLKNYFSKYGNVVELKIMKDGATGRSRGFGFLTFENPSSVDEVVKT 256
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
Q ++ ++ + + +EQ KI+V + DV ++ FF ++G
Sbjct: 257 -QHILDGKVIDPKRSIP------REEQDKTG----KIFVGGIGTDVRPKEFEDFFAQYGT 305
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
I + D TG+SRGF Y + + + + F+G Q++ ++A N+ ++
Sbjct: 306 IIDAQLMLDKDTGRSRGFGFVTYDSGDAVDRVCQNKYIEFKGKQIEIKRAEPRHNQRAAA 365
Query: 288 SSSSN-NQAQM-----MIQKQQQPMLQG 309
S N NQ + M Q Q P++ G
Sbjct: 366 SQPMNTNQTPLGMVNPMAQMYQPPVMGG 393
>gi|326431512|gb|EGD77082.1| RNA binding protein [Salpingoeca sp. ATCC 50818]
Length = 386
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 12/205 (5%)
Query: 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA 160
DRD + RKIFV L TT+E L+ F G I +C ++ D +++GF F+ FK +
Sbjct: 13 DRDENNRKIFVGSLDPRTTREQLVDYFDKFGNIVDCVVMTDAQGTRSRGFGFVTFKEAAS 72
Query: 161 AVKALKNPQRKVNNRMASCQLA------SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVE 214
+ L + ++ R+ + A + Q RK+++ +P D +
Sbjct: 73 VEQVLASGPHEIAGRVIDPKRALPRHHHDDPHQQQQQQPQQHRQPRVRKVFLGGLPHDAK 132
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYK---TVEGARKALEEPQKMFEGHQ 271
+E+++ FF ++G++E I +D +G+ RGF V++ TV+ + E F+G +
Sbjct: 133 EEEIKDFFSKYGDVEDVIIQYDRISGRPRGFGFVVFENDATVDQLVTSSERVYVEFKGKR 192
Query: 272 LQCQKAAEGKNRTSSNSSSSNNQAQ 296
++ ++A + S+ SS+ Q Q
Sbjct: 193 VEIKRAFP---KESAPRSSTARQYQ 214
>gi|255948100|ref|XP_002564817.1| Pc22g08010 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591834|emb|CAP98089.1| Pc22g08010 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 456
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 12/187 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W+TT ESL F GE++EC ++ D TG+++GF F+ F+ K V +
Sbjct: 1 MFIGGLNWETTDESLRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDAK-TVNTVMVK 59
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ ++ ++ + A P +++ + KI+V V ++ ++ + FF +FG +
Sbjct: 60 EHYLDGKIIDPKRAI-----PRDEQEKTS-----KIFVGGVSQEATEQDFKQFFMQFGRV 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNS 288
+ D TG+ RGF + KAL P ++ G ++ +KA N +N
Sbjct: 110 VDATLMMDKDTGRPRGFGFVTFDGDAAVEKALSRPLEIL-GKPIEVKKAQPRGNLRENND 168
Query: 289 SSSNNQA 295
++A
Sbjct: 169 QRGGHRA 175
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV G+ + T++ F G + + L++DK TG+ +GF F+ F A KAL
Sbjct: 84 KIFVGGVSQEATEQDFKQFFMQFGRVVDATLMMDKDTGRPRGFGFVTFDGDAAVEKALSR 143
Query: 168 P 168
P
Sbjct: 144 P 144
>gi|405960558|gb|EKC26474.1| RNA-binding protein Musashi-like protein Rbp6 [Crassostrea gigas]
Length = 281
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TT ESL FG GEI+E ++ D T +++GF F+ +K + L+N
Sbjct: 26 KMFIGGLSWQTTVESLKDHFGRFGEIKEAMVMKDPTTKRSRGFGFVTYKDPASVDTCLEN 85
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++N+ ++A K Q +KI+V + E ++ +F ++G+
Sbjct: 86 GPHILDNKTVDPKVAF------PRKAQPKMVTRTKKIFVGGLSAATTVEDVKNYFSQYGK 139
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD TT + RGF ++ + K E ++C+KA
Sbjct: 140 IEDAMLMFDKTTNRHRGFGFVTFENEDVVDKVCEIHFHEINKKMVECKKA 189
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT E + + F G+IE+ L+ DK T + +GF F+ F+ K +
Sbjct: 114 KKIFVGGLSAATTVEDVKNYFSQYGKIEDAMLMFDKTTNRHRGFGFVTFENEDVVDKVCE 173
Query: 167 NPQRKVNNRMASCQLAS----VGPT----GPGVKEQGAAAQGERKIYVSNVPRDV 213
++N +M C+ A + PT G G +GA + +I + +P+++
Sbjct: 174 IHFHEINKKMVECKKAQPKEVMLPTTLARGRGTLTRGAYVTEDGEIVLGEIPQEL 228
>gi|403223650|dbj|BAM41780.1| uncharacterized protein TOT_040000162 [Theileria orientalis strain
Shintoku]
Length = 416
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 113/262 (43%), Gaps = 32/262 (12%)
Query: 35 EPPPVAAAAAAATSSSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAATKIP-LLH 93
EP A TSS +SS + P E S + Q + + A+ +P L
Sbjct: 57 EPETTNETATKETSSETTSSPPATQTPTIERPPSTGRKFKFRQFLHQFSVIASHLPNTLI 116
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
D L K FV GL +T + L + F G+I +++ D TG+ +GF F+
Sbjct: 117 DSTL----------KFFVGGLHPNTDETELSNYFAKYGQILSTQVMRDLTTGRHRGFGFV 166
Query: 154 VFKTRKAAVKALKNPQ----RKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNV 209
K + ++ K+ ++V+ R L AA +KI+V +
Sbjct: 167 TLKVQHNSMNVFKDSHTVTGKRVDVRAMQTDL---------------AASLRKKIFVGGL 211
Query: 210 PRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEG 269
+ + +E L +F +FGE++ I + G SRGF V+ T E A +L P G
Sbjct: 212 SKALNEEMLDEYFSKFGEVDKVTIMRQL-DGTSRGFGFIVFTTEEAATASLRNPTHFVYG 270
Query: 270 HQLQCQKAAEGKNRTSSNSSSS 291
+++ +AAE + R S + SS+
Sbjct: 271 NKVDV-RAAETRPRQSGHHSSN 291
>gi|346326836|gb|EGX96432.1| RNA recognition protein, RNP-1 [Cordyceps militaris CM01]
Length = 525
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 132/305 (43%), Gaps = 37/305 (12%)
Query: 28 PKSLKKPEPPPVAAAAAAATSSSCSSSSESESEPESESISSLLEPYSKDQLIDLIAAAA- 86
PK P+PP A A + + ++++ES + ++ + D +L A
Sbjct: 22 PKGATGPQPPKPAEPVAPSAPAPQTTAAESSNNQGGNAMDEGDDDDDDDVDFNLGGGAGA 81
Query: 87 ----TKIPLLHDHILETADRDV---------SQRKIFVHGLGWDTTQESLLSAFGGSGEI 133
+ P +H LE+A K+F+ GL W+TT +SL F GE+
Sbjct: 82 PTSNSYAPPEPEHELESAAPAFGTVHKASAKDDGKMFIGGLNWETTDQSLRDYFSQFGEV 141
Query: 134 EECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKE 193
EC ++ D TG+++GF F+ FK K V + + ++ ++ + A P ++
Sbjct: 142 VECTVMRDSNTGRSRGFGFLTFKDAK-TVNIVMVKEHYLDGKIIDPKRAI-----PRDEQ 195
Query: 194 QGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTV 253
+ + KI+V V +D ++ R FF +FG + + D TG+ RGF +++
Sbjct: 196 EKTS-----KIFVGGVSQDTTDQEFREFFAQFGRVIDATLMMDKDTGRPRGFGFVTFESE 250
Query: 254 EGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQGQQQG 313
G + P ++ G ++ ++A N ++ N+ + +G QG
Sbjct: 251 AGVDACINIPLEI-HGKPIEVKRAQPRGNLREEEDAAKRNKFK-----------KGDDQG 298
Query: 314 QGNEQ 318
QG +Q
Sbjct: 299 QGMQQ 303
>gi|17136728|ref|NP_476869.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform A
[Drosophila melanogaster]
gi|24582366|ref|NP_723228.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform B
[Drosophila melanogaster]
gi|24582368|ref|NP_723229.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform C
[Drosophila melanogaster]
gi|281364530|ref|NP_001162897.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform D
[Drosophila melanogaster]
gi|281364532|ref|NP_001162898.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform E
[Drosophila melanogaster]
gi|386769237|ref|NP_001245917.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform F
[Drosophila melanogaster]
gi|386769239|ref|NP_001245918.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform G
[Drosophila melanogaster]
gi|386769241|ref|NP_001245919.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform H
[Drosophila melanogaster]
gi|76803817|sp|P48809.2|RB27C_DROME RecName: Full=Heterogeneous nuclear ribonucleoprotein 27C;
Short=Hrb27-C; AltName: Full=HRP48.1; AltName:
Full=hnRNP 48
gi|7297190|gb|AAF52456.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform A
[Drosophila melanogaster]
gi|7297191|gb|AAF52457.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform B
[Drosophila melanogaster]
gi|17862734|gb|AAL39844.1| LD46853p [Drosophila melanogaster]
gi|21711665|gb|AAM75023.1| GH26816p [Drosophila melanogaster]
gi|22945819|gb|AAN10605.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform C
[Drosophila melanogaster]
gi|66804007|gb|AAY56657.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
gi|272406922|gb|ACZ94188.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform D
[Drosophila melanogaster]
gi|272406923|gb|ACZ94189.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform E
[Drosophila melanogaster]
gi|383291369|gb|AFH03591.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform F
[Drosophila melanogaster]
gi|383291370|gb|AFH03592.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform G
[Drosophila melanogaster]
gi|383291371|gb|AFH03593.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform H
[Drosophila melanogaster]
Length = 421
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNN 293
+SNN
Sbjct: 179 GQNSNN 184
>gi|225433229|ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257917 [Vitis vinifera]
Length = 464
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 25/192 (13%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK--- 159
D Q K+F+ G+ W+T+++ L FG GE+ + ++ DK TG+ +GF F+VF
Sbjct: 2 DSDQGKLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILD 61
Query: 160 --------------AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIY 205
A +AL +++ ++R + A G VK +KI+
Sbjct: 62 RVLQEKHIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVK--------TKKIF 113
Query: 206 VSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQK 265
V +P + +E R +FE FG + + +D +T + RGF + T + + L +
Sbjct: 114 VGGLPPTLSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFH 173
Query: 266 MFEGHQLQCQKA 277
G Q++ ++A
Sbjct: 174 DLNGKQVEVKRA 185
>gi|11042|emb|CAA44505.1| hrp48.1 [Drosophila melanogaster]
Length = 385
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNN 293
+SNN
Sbjct: 179 GQNSNN 184
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 18/193 (9%)
Query: 102 RDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
RD + RK +F+ L ++L F G I CK+ +D++ G +KG+ F+ ++
Sbjct: 139 RDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAVDEL-GNSKGYGFVHYE 197
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERK-----IYVSNVPR 211
T +AA +A+K+ VN + + + VG P K+ + E K IYV N+
Sbjct: 198 TAEAASQAIKS----VNGMLLNEKKVFVGHHIP--KKDRMSKFEEMKANFTNIYVKNIET 251
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-PQKMFEGH 270
+V ++ R FE++GEI + + D TGKSRGF Y E A KA++E F G
Sbjct: 252 EVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDELNDSDFHGQ 311
Query: 271 QLQCQKAAEGKNR 283
+L +A + R
Sbjct: 312 KLYVGRAQKKHER 324
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I+V + + T + F GEI L D TGK++GF F+ + + A KA+
Sbjct: 244 IYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVD-- 301
Query: 169 QRKVNNRMASCQLASVG------PTGPGVKEQGAAAQGER-------KIYVSNVPRDVEK 215
++N+ Q VG +++Q AA+ E+ +YV N+ +V+
Sbjct: 302 --ELNDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDD 359
Query: 216 EKLRGFFERFGEIETGPIGFDIT 238
E+LR FE +G I + + D+T
Sbjct: 360 EELRKIFEAYGAITSAKVMRDVT 382
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V L T+ L F G++ ++ D VT ++ G+A++ + + +AL+
Sbjct: 63 LYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALE-- 120
Query: 169 QRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
++N + + + P +++ G +++ N+ ++ + L F FG
Sbjct: 121 --ELNYTLIKGRPCRIMWSQRDPALRKTGHG-----NVFIKNLDGAIDNKALHDTFAAFG 173
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE-------EPQKMFEGHQL 272
I + + D G S+G+ Y+T E A +A++ +K+F GH +
Sbjct: 174 NILSCKVAVD-ELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHI 225
>gi|195112196|ref|XP_002000660.1| GI22407 [Drosophila mojavensis]
gi|193917254|gb|EDW16121.1| GI22407 [Drosophila mojavensis]
Length = 679
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 7/170 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W T+ E L F G + + ++ D VT +++GF FI F+ K LK
Sbjct: 227 KLFVGGLSWQTSSEKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVDKVLKV 286
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P ++ + + P K + A +KI+V V +D ++++ +F +FG
Sbjct: 287 PIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSADEVKAYFSQFGA 339
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + D T + RGF ++ + + E + +++C+KA
Sbjct: 340 VEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 389
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + EKL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 227 KLFVGGLSWQTSSEKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVDKVLKV 286
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 287 PIHTLDGKKID-PKHATPKNR 306
>gi|395519835|ref|XP_003764047.1| PREDICTED: uncharacterized protein LOC100918877 [Sarcophilus
harrisii]
Length = 495
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 149 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 208
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 209 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 259
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 260 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 315
>gi|301773130|ref|XP_002921959.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Ailuropoda
melanoleuca]
Length = 339
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 259 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 315
>gi|187607268|ref|NP_001120028.1| heterogeneous nuclear ribonucleoprotein A3 [Xenopus (Silurana)
tropicalis]
gi|165971520|gb|AAI58334.1| LOC100144993 protein [Xenopus (Silurana) tropicalis]
gi|170284841|gb|AAI61197.1| LOC100144993 protein [Xenopus (Silurana) tropicalis]
Length = 383
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G++ +C ++ D T +++GF F+ + + A+
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 86
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + +A G +KI+V + D E+ LR +F
Sbjct: 87 ARPHKVDGRVVEPKRA--------VSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYF 138
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ +G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 139 QSYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 193
>gi|149716413|ref|XP_001497933.1| PREDICTED: ELAV-like protein 1 [Equus caballus]
Length = 326
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAV-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|34785465|gb|AAH57655.1| Hnrpa3 protein, partial [Mus musculus]
Length = 303
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|322786135|gb|EFZ12742.1| hypothetical protein SINV_01194 [Solenopsis invicta]
Length = 330
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 15/173 (8%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
RK+FV GL W+TT + L F G+IE + D TG+++GFAFIVF +A K +
Sbjct: 43 DRKLFVGGLSWETTDKELREHFSTYGDIESINVKTDPNTGRSRGFAFIVFAKAEALDKIM 102
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+NN+ V P ++ A G KI+V + ++ + ++ FF +F
Sbjct: 103 SAGDHVINNK-------KVDP------KKAKARHG--KIFVGGLSTELSDDDIKNFFSQF 147
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
G I + FD T + +GF +++ + + L+ P++ G + +KA
Sbjct: 148 GNIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKAVDVKKAT 200
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A A KI DH++ D KIFV GL + + + + + F G I E +
Sbjct: 95 AEALDKIMSAGDHVINNKKVDPKKAKARHGKIFVGGLSTELSDDDIKNFFSQFGNIVEVE 154
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ DK + KGF FI F++ + + LK P++ +N + + A+
Sbjct: 155 MPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKAVDVKKAT 200
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 182 ASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGK 241
A G G V E G +Q +RK++V + + ++LR F +G+IE+ + D TG+
Sbjct: 25 AESGGGGDAV-ENGQDSQEDRKLFVGGLSWETTDKELREHFSTYGDIESINVKTDPNTGR 83
Query: 242 SRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
SRGFA V+ E K + + ++ +KA
Sbjct: 84 SRGFAFIVFAKAEALDKIMSAGDHVINNKKVDPKKA 119
>gi|67968717|dbj|BAE00717.1| unnamed protein product [Macaca fascicularis]
Length = 326
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
>gi|255548025|ref|XP_002515069.1| RNA-binding region-containing protein, putative [Ricinus communis]
gi|223545549|gb|EEF47053.1| RNA-binding region-containing protein, putative [Ricinus communis]
Length = 291
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 55/83 (66%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + KIFV GL W+T ++++ F GEI E ++ DK TG++KG+ F+ FK +AA+
Sbjct: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAI 79
Query: 163 KALKNPQRKVNNRMASCQLASVG 185
+A +NP ++ R A+C LAS+G
Sbjct: 80 RACQNPSPVIDGRRANCNLASLG 102
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V + + +++ +R +FE+FGEI + D TG+S+G+ +K E A +A +
Sbjct: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAIRACQN 84
Query: 263 PQKMFEGHQLQCQKAAEGKNRTSS 286
P + +G + C A+ G ++T S
Sbjct: 85 PSPVIDGRRANCNLASLGAHKTRS 108
>gi|55742017|ref|NP_001006737.1| DAZ associated protein 1 [Xenopus (Silurana) tropicalis]
gi|49522454|gb|AAH75497.1| DAZ associated protein 1 [Xenopus (Silurana) tropicalis]
Length = 362
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 9/196 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 PQRKVNNRMAS---CQLASVGP--TGP--GVKEQGAAAQGER--KIYVSNVPRDVEKEKL 218
++ R C + P T P G +++G + R KI+V +P + + +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPREGWQQKGPRTENSRSNKIFVGGIPHNCGETEL 130
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
R +F+RFG + + +D + RGF ++ + +A+ G +++ ++A
Sbjct: 131 REYFKRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 190
Query: 279 EGKNRTSSNSSSSNNQ 294
+++ + +NQ
Sbjct: 191 PRDSKSQTPGPPGSNQ 206
>gi|395513446|ref|XP_003760935.1| PREDICTED: ELAV-like protein 1 [Sarcophilus harrisii]
Length = 374
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 55 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 114
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 115 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 165
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 166 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 219
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 294 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 350
>gi|340730010|ref|XP_003403285.1| PREDICTED: DAZ-associated protein 1-like [Bombus terrestris]
Length = 390
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ E L FG G + + ++ D VT +++GF FI F +
Sbjct: 57 DPAPGKLFVGGLSWQTSSEKLREYFGMFGTVTDVLIMKDPVTQRSRGFGFITFAEPGSVD 116
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D ++++ +F
Sbjct: 117 KVLKCPIHTLDGK-------KIDPKHATPKNRAKQANRTKKIFVGGVSQDTSSDEVKAYF 169
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG++E + D T + RGF ++ + + E + +++C+KA
Sbjct: 170 NQFGKVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 224
>gi|307180208|gb|EFN68241.1| RNA-binding protein squid [Camponotus floridanus]
Length = 296
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 15/173 (8%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
RK+FV GL W+TT + L F G+IE + D TG+++GFAFIVF +A K +
Sbjct: 48 DRKLFVGGLSWETTDKELREHFSTYGDIESINVKTDPNTGRSRGFAFIVFAKAEALDKIM 107
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+NN+ V P ++ A G KI+V + ++ + ++ FF +F
Sbjct: 108 SAGDHVINNK-------KVDP------KKAKARHG--KIFVGGLSTELSDDDIKNFFSQF 152
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
G I + FD T + +GF +++ + + L+ P++ G + +KA
Sbjct: 153 GNIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTISGKAVDVKKAT 205
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A A KI DH++ D KIFV GL + + + + + F G I E +
Sbjct: 100 AEALDKIMSAGDHVINNKKVDPKKAKARHGKIFVGGLSTELSDDDIKNFFSQFGNIVEVE 159
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ DK + KGF FI F++ + + LK P++ ++ + + A+
Sbjct: 160 MPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTISGKAVDVKKAT 205
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 16/212 (7%)
Query: 102 RDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
RD S RK +F+ L +++ F G I CK+ D+ TG +KGF F+ F+
Sbjct: 90 RDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQDE-TGSSKGFGFVHFE 148
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERK---IYVSNVPRDV 213
T++AA +A+ KVN M + + VG P + A + +++ IYV N
Sbjct: 149 TQEAADEAMA----KVNGMMLNGKKVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKW 204
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKM--FEGHQ 271
+ +KLR FFE++G++ + + D G SRGF Y+ + A KA EE M +G +
Sbjct: 205 DDDKLRDFFEKYGKVVSAKVMTD-DMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRR 263
Query: 272 LQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQ 303
+ +A + R + + Q IQ+ Q
Sbjct: 264 IYVGRAQKKAERQAELKAKFEKIKQERIQRYQ 295
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 109 IFVHGLG--WDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
I+V G WD + L F G++ K++ D + G ++GF F+ ++ +A KA +
Sbjct: 195 IYVKNFGDKWD--DDKLRDFFEKYGKVVSAKVMTDDM-GHSRGFGFVSYEEPDSAGKACE 251
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERK------------------IYVSN 208
M ++ G ++ A Q E K +YV N
Sbjct: 252 E--------MNDMEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQRYQGVNLYVKN 303
Query: 209 VPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+ +++E LR F +FG I + + + G+S+GF + + E A KA+ E
Sbjct: 304 LDSTIDEEILRKEFSQFGTITSSKVMTE--NGRSKGFGFVCFSSPEEATKAVTE 355
>gi|119589356|gb|EAW68950.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_b [Homo sapiens]
Length = 445
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 126 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 185
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 186 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 236
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 237 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK----RSEAEEAITSFNGHK 290
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 365 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 421
>gi|383856328|ref|XP_003703661.1| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like [Megachile
rotundata]
Length = 316
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ E L FG G + + ++ D VT +++GF FI F +
Sbjct: 36 DPAPGKLFVGGLSWQTSSEKLREYFGMFGTVTDVLIMKDPVTQRSRGFGFITFAEPGSVD 95
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 96 KVLKCPIHTLDGK-------KIDPKHATPKNRAKQANRTKKIFVGGVSQDTSSEEVKAYF 148
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG++E + D T + RGF ++ + + E + +++C+KA
Sbjct: 149 NQFGKVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 203
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + EKLR +F FG + I D T +SRGF + K L+
Sbjct: 41 KLFVGGLSWQTSSEKLREYFGMFGTVTDVLIMKDPVTQRSRGFGFITFAEPGSVDKVLKC 100
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 101 PIHTLDGKKID-PKHATPKNR 120
>gi|326922673|ref|XP_003207572.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Meleagris gallopavo]
Length = 378
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 92
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 93 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLREY 143
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 144 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 199
>gi|225447606|ref|XP_002272993.1| PREDICTED: uncharacterized protein LOC100246008 [Vitis vinifera]
Length = 478
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 7/176 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT ++ L F GE+ E ++ D+ TG+A+GF F+VF A + +K
Sbjct: 7 KLFIGGISWDTNEDRLKDYFSNYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVIK- 65
Query: 168 PQRKVNNRMASCQLA------SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
+ ++ RM + A S+ G RKI+V + V + + +
Sbjct: 66 EKHNIDGRMVEAKKAVPKDDQSILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
F++FG I + +D T + RGF Y++ E K L + G ++ ++A
Sbjct: 126 FDQFGAITDVVVMYDHNTQRPRGFGFITYESEEAVDKVLLKTFHELNGKMVEVKRA 181
>gi|307211208|gb|EFN87408.1| RNA-binding protein squid [Harpegnathos saltator]
Length = 331
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 15/173 (8%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
RK+FV GL W+TT + L F G+IE + D TG+++GFAFIVF +A K +
Sbjct: 47 DRKLFVGGLSWETTDKELRDHFNTYGDIESINVKTDPNTGRSRGFAFIVFAKAEALDKIM 106
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+NN+ V P ++ A G KI+V + ++ + ++ FF +F
Sbjct: 107 SAGDHVINNK-------KVDP------KKAKARHG--KIFVGGLSTELSDDDIKHFFSQF 151
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
G I + FD T + +GF +++ + + L+ P++ G + +KA
Sbjct: 152 GNIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKAVDVKKAT 204
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 174 NRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPI 233
++ + VG G V+ +Q +RK++V + + ++LR F +G+IE+ +
Sbjct: 20 DKNGDAESGDVGDGGDAVENGSQDSQEDRKLFVGGLSWETTDKELRDHFNTYGDIESINV 79
Query: 234 GFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
D TG+SRGFA V+ E K + + ++ +KA
Sbjct: 80 KTDPNTGRSRGFAFIVFAKAEALDKIMSAGDHVINNKKVDPKKA 123
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A A KI DH++ D KIFV GL + + + + F G I E +
Sbjct: 99 AEALDKIMSAGDHVINNKKVDPKKAKARHGKIFVGGLSTELSDDDIKHFFSQFGNIVEVE 158
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183
+ DK + KGF FI F++ + + LK P++ +N + + A+
Sbjct: 159 MPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKAVDVKKAT 204
>gi|332852452|ref|XP_001156587.2| PREDICTED: ELAV-like protein 1 isoform 1 [Pan troglodytes]
gi|397477357|ref|XP_003810039.1| PREDICTED: ELAV-like protein 1 [Pan paniscus]
gi|426386983|ref|XP_004059958.1| PREDICTED: ELAV-like protein 1 isoform 2 [Gorilla gorilla gorilla]
gi|194375035|dbj|BAG62630.1| unnamed protein product [Homo sapiens]
Length = 353
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 34 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 93
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 94 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 144
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 145 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 198
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 329
>gi|195997575|ref|XP_002108656.1| hypothetical protein TRIADDRAFT_5340 [Trichoplax adhaerens]
gi|190589432|gb|EDV29454.1| hypothetical protein TRIADDRAFT_5340, partial [Trichoplax
adhaerens]
Length = 172
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 11/172 (6%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+RK+FV GL W+TT+E F GE+ C ++ D VT +++GF FI+++ KAL
Sbjct: 2 ERKLFVGGLSWETTEERFREHFEKFGEVVNCIILRDPVTKRSRGFGFIIYRNVSDIDKAL 61
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ ++ + V P +EQ +KI++ +P + E L+ +F ++
Sbjct: 62 LHATHVIDGK-------QVEPKRSVPREQTRT----KKIFIGGLPPNTSDEDLKIYFGKY 110
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G + + D TG+ RGF + T EGA+KAL G Q +KA
Sbjct: 111 GVVSEVELLRDKETGRLRGFGFVSFDTPEGAQKALVTKMHEINGKMAQVKKA 162
>gi|297275993|ref|XP_001092907.2| PREDICTED: ELAV-like protein 1 isoform 4 [Macaca mulatta]
Length = 387
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 307 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 363
>gi|26347149|dbj|BAC37223.1| unnamed protein product [Mus musculus]
Length = 326
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQE L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLHQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAISTLN-GLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 169 QR 170
+R
Sbjct: 306 KR 307
>gi|1022961|gb|AAB41913.1| HuR RNA binding protein [Homo sapiens]
Length = 326
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|187956922|gb|AAI58075.1| EG627828 protein [Mus musculus]
gi|187956950|gb|AAI57905.1| EG627828 protein [Mus musculus]
gi|219521461|gb|AAI72011.1| EG627828 protein [Mus musculus]
Length = 351
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPYKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
FE++G+IET + D +GK RGFA + + K + + GH + +KA +
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 183
Query: 282 NRTSSNS 288
S+ S
Sbjct: 184 EMRSAGS 190
>gi|38201714|ref|NP_001410.2| ELAV-like protein 1 [Homo sapiens]
gi|114675067|ref|XP_001156643.1| PREDICTED: ELAV-like protein 1 isoform 2 [Pan troglodytes]
gi|395750352|ref|XP_002828622.2| PREDICTED: ELAV-like protein 1 [Pongo abelii]
gi|395841768|ref|XP_003793705.1| PREDICTED: ELAV-like protein 1 [Otolemur garnettii]
gi|402914021|ref|XP_003919435.1| PREDICTED: ELAV-like protein 1 [Papio anubis]
gi|403296075|ref|XP_003938946.1| PREDICTED: ELAV-like protein 1 [Saimiri boliviensis boliviensis]
gi|426386981|ref|XP_004059957.1| PREDICTED: ELAV-like protein 1 isoform 1 [Gorilla gorilla gorilla]
gi|20981691|sp|Q15717.2|ELAV1_HUMAN RecName: Full=ELAV-like protein 1; AltName: Full=Hu-antigen R;
Short=HuR
gi|13097228|gb|AAH03376.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Homo sapiens]
gi|32879929|gb|AAP88795.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Homo sapiens]
gi|60654991|gb|AAX32059.1| ELAV-like 1 [synthetic construct]
gi|60654993|gb|AAX32060.1| ELAV-like 1 [synthetic construct]
gi|60654995|gb|AAX32061.1| ELAV-like 1 [synthetic construct]
gi|60654997|gb|AAX32062.1| ELAV-like 1 [synthetic construct]
gi|119589355|gb|EAW68949.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_a [Homo sapiens]
gi|157928080|gb|ABW03336.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [synthetic construct]
gi|157928791|gb|ABW03681.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [synthetic construct]
gi|208966198|dbj|BAG73113.1| ELAV-like 1protein [synthetic construct]
gi|355703066|gb|EHH29557.1| hypothetical protein EGK_10021 [Macaca mulatta]
gi|355755385|gb|EHH59132.1| hypothetical protein EGM_09177 [Macaca fascicularis]
gi|380784245|gb|AFE63998.1| ELAV-like protein 1 [Macaca mulatta]
gi|383416395|gb|AFH31411.1| ELAV-like protein 1 [Macaca mulatta]
gi|384945706|gb|AFI36458.1| ELAV-like protein 1 [Macaca mulatta]
gi|410212674|gb|JAA03556.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
gi|410265350|gb|JAA20641.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
gi|410305890|gb|JAA31545.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
gi|410342973|gb|JAA40433.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
Length = 326
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|452840783|gb|EME42721.1| hypothetical protein DOTSEDRAFT_73510 [Dothistroma septosporum
NZE10]
Length = 529
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 12/170 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT ESL + F GE+ EC ++ D TG+++GF F+ FK K V +
Sbjct: 102 KMFIGGLNWETTDESLKNYFSQFGEVIECTVMRDGATGRSRGFGFLTFKDPK-TVNTVMV 160
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ ++ + A P +++ A KI+V V +D + + FF +FG
Sbjct: 161 KEHQLDGKLIDPKRAI-----PRDEQERTA-----KIFVGGVSQDATESDFKEFFMKFGR 210
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ + D TG+ RGF + + LE P + G ++ ++A
Sbjct: 211 VLDATLMMDKDTGRPRGFGFVTFDNDLAVERTLEGPLSIL-GKPIEVKRA 259
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 102 RDVSQR--KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
RD +R KIFV G+ D T+ F G + + L++DK TG+ +GF F+ F
Sbjct: 178 RDEQERTAKIFVGGVSQDATESDFKEFFMKFGRVLDATLMMDKDTGRPRGFGFVTFDNDL 237
Query: 160 AAVKALKNP 168
A + L+ P
Sbjct: 238 AVERTLEGP 246
>gi|335302749|ref|XP_003133427.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa]
Length = 447
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 11/185 (5%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 104 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 163
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGA---AAQGERKIYVSNVPRD 212
+ A+ ++ R+ V P +E+ A +K++V + D
Sbjct: 164 SSMAEVDAAMAARPHSIDGRV-------VEPKRAVAREESGKPGAHVTVKKLFVGGIKED 216
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
E+ LR +FE +G+++T I D +GK RGF F + + K + + GH
Sbjct: 217 TEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNA 276
Query: 273 QCQKA 277
+ +KA
Sbjct: 277 EVRKA 281
>gi|45382283|ref|NP_990164.1| ELAV-like protein 1 [Gallus gallus]
gi|5738249|gb|AAD50313.1|AF176673_1 RNA-binding protein HuA [Gallus gallus]
Length = 326
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRSM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVVDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITNFNGHK 171
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|198420439|ref|XP_002131647.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A3
[Ciona intestinalis]
Length = 442
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 8/186 (4%)
Query: 96 ILETADRDVS----QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFA 151
I ET D++ QRK+F+ GL +DTT ESL + F GE+ + +++D T K++GF
Sbjct: 6 IDETNGEDINEPEQQRKLFIGGLSFDTTNESLSAYFTKFGEVTDSVVMMDPKTKKSRGFG 65
Query: 152 FIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPR 211
F+ FK K + K++ R + + A E+ A +KI+V +
Sbjct: 66 FVTFKRIKMVDAVMSERPHKLDGRTVTPKRA----VSREDSEKPGAHATVKKIFVGGIKD 121
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
D ++ L+ F +FG +E + D T K RGFA + + K + + GH
Sbjct: 122 DTTEQHLKDHFRKFGIVELVEVMEDRETRKKRGFAFVTFADHDPVDKIVSQKYHTINGHN 181
Query: 272 LQCQKA 277
+ +KA
Sbjct: 182 CEVRKA 187
>gi|291401097|ref|XP_002716928.1| PREDICTED: mCG1035404-like isoform 2 [Oryctolagus cuniculus]
Length = 355
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRAVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHSCEVKKA 179
>gi|363735855|ref|XP_003641619.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Gallus gallus]
Length = 386
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 41 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 100
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 101 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLREY 151
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 152 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 207
>gi|390178412|ref|XP_003736644.1| GA14206, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859438|gb|EIM52717.1| GA14206, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 319
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 15/185 (8%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
+H +++ RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFI
Sbjct: 42 EHTSAVSNQRDDDRKLFVGGLSWETTEKELRDHFGKFGEIESINVKTDPQTGRSRGFAFI 101
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
VF +A K + +N++ V P ++ A G KI+V + ++
Sbjct: 102 VFTNTEAIDKVSSAGEHIINSK-------KVDP------KKAKARHG--KIFVGGLTTEI 146
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
E+++ +F +FG I + FD + +GF + + + L+ P++ G ++
Sbjct: 147 SDEEIKTYFSQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVD 206
Query: 274 CQKAA 278
++A
Sbjct: 207 VKRAT 211
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
++ + ID +++A +HI+ + D KIFV GL + + E + + F
Sbjct: 103 FTNTEAIDKVSSAG-------EHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYF 155
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G I E ++ DK + KGF FI F + + LK P++K++ + + A+ P
Sbjct: 156 SQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKP 214
>gi|148235805|ref|NP_001079609.1| heterogeneous nuclear ribonucleoprotein D-like-A [Xenopus laevis]
gi|82241529|sp|Q7ZX83.1|HNDLA_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like-A;
Short=hnRNP D-like A; Short=hnRNP DL-A
gi|28175291|gb|AAH45124.1| MGC53310 protein [Xenopus laevis]
Length = 293
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + + +E+++ +F
Sbjct: 87 NEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPETTEEQIKQYFGG 133
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 134 FGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE 170
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL +TT+E + FGG GEIE +L ID T + +GF F+ + + K L+
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 167 NPQRKVNNRMASCQLASVGP 186
+ ++ C++ + P
Sbjct: 171 SRFHQIG--TGKCEIKAAQP 188
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q E K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 23 QDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDK 82
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 83 VLETNEHKLDGKLIDPKRA 101
>gi|157112076|ref|XP_001651782.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878175|gb|EAT42400.1| AAEL006057-PA [Aedes aegypti]
Length = 482
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 98/200 (49%), Gaps = 14/200 (7%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ E L FG G++ + ++ D +T +++GF FI F+ +
Sbjct: 98 DPAPGKLFVGGLSWQTSSEKLSEYFGMFGKVTDVLIMKDPITQRSRGFGFITFQEPNSVD 157
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + A+ P + + + +KI+V V +D E++R +F
Sbjct: 158 KVLKVPIHTLDGKKIDPKHAT-----PKNRPK-TQSNKTKKIFVGGVSQDTSAEEVRQYF 211
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
+FG+++ + D T + RGF ++ + + E + +++C+KA +
Sbjct: 212 SQFGKVDETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEA 271
Query: 283 RTSSNSSSSNNQAQMMIQKQ 302
T + AQ ++QK+
Sbjct: 272 VTPT--------AQQLLQKR 283
>gi|49402291|ref|NP_956398.1| heterogeneous nuclear ribonucleoprotein A1 [Danio rerio]
gi|27882514|gb|AAH44442.1| Heterogeneous nuclear ribonucleoprotein A1 [Danio rerio]
Length = 422
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 10/174 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL + F G + +C ++ D T +++GF F+ + + ++
Sbjct: 33 RKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMD 92
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGA---AAQGERKIYVSNVPRDVEKEKLRGFFE 223
KV+ R+ V P +E + A +KI+V + D E+ LR +F+
Sbjct: 93 ARPHKVDGRL-------VEPKRAVSREDSSKPFAHTTVKKIFVGGIKDDTEENHLRDYFD 145
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG+IE I D TG RGFA + + + + + GH + +KA
Sbjct: 146 QFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRKA 199
>gi|390178414|ref|XP_001359012.3| GA14206, isoform C [Drosophila pseudoobscura pseudoobscura]
gi|388859439|gb|EAL28155.3| GA14206, isoform C [Drosophila pseudoobscura pseudoobscura]
Length = 310
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 21/214 (9%)
Query: 71 EPYSKDQLIDLI------AAAATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLL 124
E ++KD + + AA A +H +++ RK+FV GL W+TT++ L
Sbjct: 13 EDFTKDVTTNDVSSENGDAAGAAGSTNGSEHTSAVSNQRDDDRKLFVGGLSWETTEKELR 72
Query: 125 SAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASV 184
FG GEIE + D TG+++GFAFIVF +A K + +N++ V
Sbjct: 73 DHFGKFGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSSAGEHIINSK-------KV 125
Query: 185 GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRG 244
P ++ A G KI+V + ++ E+++ +F +FG I + FD + +G
Sbjct: 126 DP------KKAKARHG--KIFVGGLTTEISDEEIKTYFSQFGNIVEVEMPFDKQKSQRKG 177
Query: 245 FAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F + + + L+ P++ G ++ ++A
Sbjct: 178 FCFITFDSEQVVTDLLKTPKQKISGKEVDVKRAT 211
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
++ + ID +++A +HI+ + D KIFV GL + + E + + F
Sbjct: 103 FTNTEAIDKVSSAG-------EHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYF 155
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G I E ++ DK + KGF FI F + + LK P++K++ + + A+ P
Sbjct: 156 SQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKP 214
>gi|50294199|ref|XP_449511.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528825|emb|CAG62487.1| unnamed protein product [Candida glabrata]
Length = 513
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 11/170 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT++ L F G + E K++ D TG+++GF F+ F + + +K
Sbjct: 131 KMFIGGLNWETTEDGLREYFSKYGNVVELKIMKDPNTGRSRGFGFLSFDAPSSVDEVVKT 190
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
Q ++ ++ + A +EQ KI+V + DV ++ +F ++G
Sbjct: 191 -QHILDGKVIDPKRAIP------REEQDKTG----KIFVGGLGTDVRPKEFEEYFSQWGT 239
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
I + D TG+SRGF Y + + A K E + F+G Q++ ++A
Sbjct: 240 IIDAQLMLDKDTGRSRGFGFVTYDSPDAAEKVCESRYREFKGKQIEIKRA 289
>gi|184185549|gb|ACC68948.1| heterogeneous nuclear ribonucleoprotein A1 (predicted) [Rhinolophus
ferrumequinum]
Length = 299
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSRSEQWGALTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|74138233|dbj|BAE28602.1| unnamed protein product [Mus musculus]
Length = 326
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQE L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAISTLN-GLRLQSKTIKVSYAHPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|58332392|ref|NP_001011015.1| heterogeneous nuclear ribonucleoprotein D-like [Xenopus (Silurana)
tropicalis]
gi|82234092|sp|Q640A2.1|HNRDL_XENTR RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL
gi|52139122|gb|AAH82729.1| heterogeneous nuclear ribonucleoprotein D-like [Xenopus (Silurana)
tropicalis]
gi|89268223|emb|CAJ82429.1| heterogeneous nuclear ribonucleoprotein D-like [Xenopus (Silurana)
tropicalis]
Length = 297
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + + +E+++ +F
Sbjct: 87 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPETTEEQIKQYFGG 133
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 134 FGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLE 170
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL +TT+E + FGG GEIE +L +D T + +GF F+ + + K L+
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 167 NPQRKVNNRMASCQLASVGP 186
+ ++ C++ P
Sbjct: 171 SRFHQIG--TGKCEIKVAQP 188
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q E K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 23 QDEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDK 82
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 83 VLETKEHKLDGKLIDPKRA 101
>gi|367007988|ref|XP_003688723.1| hypothetical protein TPHA_0P01310 [Tetrapisispora phaffii CBS 4417]
gi|357527033|emb|CCE66289.1| hypothetical protein TPHA_0P01310 [Tetrapisispora phaffii CBS 4417]
Length = 518
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT+++L F G + E K++ D TG+++GF F+ F+ + + +K
Sbjct: 165 KMFIGGLNWETTEDTLRDYFNKYGSVVELKIMKDNNTGRSRGFGFLTFENASSVDEVVKT 224
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
Q ++ ++ + A +EQ KI+V + DV ++ FF ++G
Sbjct: 225 -QHILDGKVIDPKRAIP------REEQDKTG----KIFVGGIGADVRPKEFEEFFAQYGT 273
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
I + D TG+SRGF Y + + + + F+G Q++ ++A N+ +S
Sbjct: 274 IIDAQLMLDKDTGRSRGFGFVTYDSPDAVDRVCQSKYIEFKGKQIEIKRAEPRNNQKAS 332
>gi|326435665|gb|EGD81235.1| RNA-binding protein Musashi-1 [Salpingoeca sp. ATCC 50818]
Length = 1023
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 21/201 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL +T ++ L F GE+ +C ++ D TG+ +GF F+ F+ + K L+
Sbjct: 427 KMFVGGLSPETNRDRLKGYFSRFGEVVDCVVMTDATTGRTRGFGFVTFRDGRCCAKVLRE 486
Query: 168 PQRKVNNRMASCQLA------------SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEK 215
++ R ++A S P P +G +A RK++V +P +
Sbjct: 487 RPHIIDGREVDPKMAVPREQMEQHSRSSSAPAAP----RGRSA---RKVFVGGLPSNATD 539
Query: 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275
E L GFF FGEIE + D T RGF + + + A + G ++ +
Sbjct: 540 EALIGFFSNFGEIEEAVVIHDKQTRLPRGFGFVTFVSEQVAEHVVSLHYHDLLGKMVEVK 599
Query: 276 KAAEGKNRTSSNSSSSNNQAQ 296
+A T N S S N Q
Sbjct: 600 RAE--PKATDGNRSPSRNYRQ 618
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A R S RK+FV GL + T E+L+ F GEIEE ++ DK T +GF F+ F + +
Sbjct: 519 APRGRSARKVFVGGLPSNATDEALIGFFSNFGEIEEAVVIHDKQTRLPRGFGFVTFVSEQ 578
Query: 160 AA 161
A
Sbjct: 579 VA 580
>gi|296209042|ref|XP_002751365.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Callithrix jacchus]
Length = 375
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHSEQWGTLTDCVVMRDANTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDNEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|449506755|ref|XP_002199353.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Taeniopygia guttata]
Length = 385
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 40 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 99
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 100 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLREY 150
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 151 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 206
>gi|358056795|dbj|GAA97145.1| hypothetical protein E5Q_03820 [Mixia osmundae IAM 14324]
Length = 2950
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
K+F+ GL W+TT E+L S F G++ + +++ D TG+++GFAF+ F + + L+
Sbjct: 1806 KMFIGGLNWETTDEALWSYFARFGKVTQSQIMRDPNTGRSRGFAFLSFDNSASVDEVLRQ 1865
Query: 167 ---------NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEK 217
+P+R + A A V P + E K++V VP+ ++
Sbjct: 1866 DHWLDNKNIDPKRAIPRPGAPRSSAGVRPPETRPNNPVPNSNEETKLFVRGVPQGATQQH 1925
Query: 218 LRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
F +FG +E+ + FD TTG +RG+ Y
Sbjct: 1926 FYDHFAKFGPMESCVLMFDRTTGLNRGYGFVTY 1958
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSR 243
VG T P E+G K+++ + + E L +F RFG++ I D TG+SR
Sbjct: 1794 VGHTDPQEFEEG-------KMFIGGLNWETTDEALWSYFARFGKVTQSQIMRDPNTGRSR 1846
Query: 244 GFAIFVYKTVEGARKALEE 262
GFA + + L +
Sbjct: 1847 GFAFLSFDNSASVDEVLRQ 1865
>gi|356516138|ref|XP_003526753.1| PREDICTED: uncharacterized protein LOC100799072 [Glycine max]
Length = 246
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + KIFV GL W+T +++L F GEI E ++ D++TG++KG+ F++F+ +A+
Sbjct: 12 DTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRITGRSKGYGFVIFRDPNSAI 71
Query: 163 KALKNPQRKVNNRMASCQLASVG 185
+A NP ++ R A+C LA++G
Sbjct: 72 RACHNPYPVIDGRRANCNLAALG 94
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V + + +++ L+ +F++FGEI + D TG+S+G+ +++ A +A
Sbjct: 17 KIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRITGRSKGYGFVIFRDPNSAIRACHN 76
Query: 263 PQKMFEGHQLQCQKAAEGKNRTSSN--------SSSSNNQAQMMIQ 300
P + +G + C AA G + + SS S N A + +Q
Sbjct: 77 PYPVIDGRRANCNLAALGAQKFDPSITTGRQKFSSPSWNMAPIPLQ 122
>gi|297796435|ref|XP_002866102.1| hypothetical protein ARALYDRAFT_495641 [Arabidopsis lyrata subsp.
lyrata]
gi|297311937|gb|EFH42361.1| hypothetical protein ARALYDRAFT_495641 [Arabidopsis lyrata subsp.
lyrata]
Length = 449
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF------------ 155
K+F+ G+ WDT +E L F G++ E ++ D+ TG+A+GF FIVF
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIME 66
Query: 156 ------KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNV 209
+T +A ++ Q+ + + QL S P G +KI+V +
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIQLMS--PV------HGGGGGRTKKIFVGGL 118
Query: 210 PRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEG 269
P + +E+ + +F++FG I + +D T + RGF + + + + L + G
Sbjct: 119 PSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNG 178
Query: 270 HQLQCQKAAEGKNRTSSNSSS 290
++ ++A + SN+ S
Sbjct: 179 KLVEVKRAVPKETSPVSNNRS 199
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL T+E + F G I + ++ D T + +GF FI F + A + L
Sbjct: 111 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 170
Query: 167 NPQRKVNNRMASCQLASVGPTGP 189
++N ++ + A T P
Sbjct: 171 KTFHELNGKLVEVKRAVPKETSP 193
>gi|115448273|ref|NP_001047916.1| Os02g0714000 [Oryza sativa Japonica Group]
gi|113537447|dbj|BAF09830.1| Os02g0714000 [Oryza sativa Japonica Group]
gi|215707046|dbj|BAG93506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 287
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 95 HILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
H+L + D + K+FV GL W+TT E L + GEI E ++ D+ +G++KG+ F+
Sbjct: 25 HLLASPFGDTTYTKVFVGGLAWETTSERLRRFYDRFGEILEAVVITDRHSGRSKGYGFVT 84
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVE 214
F+ ++A KA ++P ++ R A+C LAS+G P V + G + VPR V
Sbjct: 85 FRDPESARKACEDPTPVIDGRRANCNLASLGRAQPAVPLGRPRSAGS--YFGVPVPRGV- 141
Query: 215 KEKLRGFFERFGEIETGPIGF 235
+ +G+ T P+G+
Sbjct: 142 ------YVGGYGQHRTLPLGY 156
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + E+LR F++RFGEI + D +G+S+G+ ++ E ARKA E+
Sbjct: 38 KVFVGGLAWETTSERLRRFYDRFGEILEAVVITDRHSGRSKGYGFVTFRDPESARKACED 97
Query: 263 PQKMFEGHQLQCQKAAEGK 281
P + +G + C A+ G+
Sbjct: 98 PTPVIDGRRANCNLASLGR 116
>gi|449444504|ref|XP_004140014.1| PREDICTED: uncharacterized protein LOC101222391 [Cucumis sativus]
gi|449505107|ref|XP_004162378.1| PREDICTED: uncharacterized protein LOC101227668 [Cucumis sativus]
Length = 476
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV G+ WDT ++ L F G++ E ++ D+ TG+ +GF FIVF A + ++
Sbjct: 7 KLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVADRVIR- 65
Query: 168 PQRKVNNRMASCQLAS-------VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
+ ++ RM + A VG T + + RKI+V + V + + +
Sbjct: 66 EKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGR-TRKIFVGGLASTVTESEFKN 124
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+F++FG I + +D T + RGF Y + E K L + G ++ ++A
Sbjct: 125 YFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKRA 181
>gi|31542602|ref|NP_034615.2| ELAV-like protein 1 [Mus musculus]
gi|157818153|ref|NP_001102318.1| ELAV-like protein 1 [Rattus norvegicus]
gi|354488231|ref|XP_003506274.1| PREDICTED: ELAV-like protein 1 [Cricetulus griseus]
gi|341940489|sp|P70372.2|ELAV1_MOUSE RecName: Full=ELAV-like protein 1; AltName: Full=Elav-like generic
protein; AltName: Full=Hu-antigen R; Short=HuR; AltName:
Full=MelG
gi|26348505|dbj|BAC37892.1| unnamed protein product [Mus musculus]
gi|83308037|emb|CAI77902.1| HuR RNA binding protein [Spalax judaei]
gi|148690049|gb|EDL21996.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_a [Mus musculus]
gi|148690050|gb|EDL21997.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_a [Mus musculus]
gi|149015619|gb|EDL75000.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) (predicted), isoform CRA_a [Rattus
norvegicus]
gi|149015620|gb|EDL75001.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) (predicted), isoform CRA_a [Rattus
norvegicus]
gi|197245826|gb|AAI68972.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Rattus norvegicus]
gi|208609536|dbj|BAG72208.1| HuR [Rattus norvegicus]
Length = 326
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQE L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAISTLN-GLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|343959022|dbj|BAK63366.1| ELAV-like protein 1 [Pan troglodytes]
Length = 305
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 24/180 (13%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
+ +++ GL TQ+ + F G I ++++D+ TG ++G AFI F R A +
Sbjct: 103 IKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 162
Query: 164 ALK----------------------NPQRKVNNRMASCQLASVGPTG-PGVKEQGAAAQG 200
A+ NP R + +G GV G A+ G
Sbjct: 163 AITSFNGHKPPGSSEPITVKFAANPNPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSG 222
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
I++ N+ +D ++ L F FG + + D T K +GF E A A+
Sbjct: 223 W-CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 281
>gi|194760296|ref|XP_001962377.1| GF15435 [Drosophila ananassae]
gi|190616074|gb|EDV31598.1| GF15435 [Drosophila ananassae]
Length = 421
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFGRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNN 293
+SNN
Sbjct: 179 GQNSNN 184
>gi|26344670|dbj|BAC35984.1| unnamed protein product [Mus musculus]
Length = 326
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQE L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAISTLN-GLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|354480942|ref|XP_003502662.1| PREDICTED: DAZ-associated protein 1-like [Cricetulus griseus]
Length = 495
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 10/202 (4%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A+ V +RK+FV GL W TTQE+L S F GE+ +C ++ DK T +++GF F+ FK
Sbjct: 92 AESSVPRRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 151
Query: 160 AAVKALKNPQRKVNNRMAS---CQLASVGPTGPGVKE---QGAAAQGER--KIYVSNVPR 211
L + ++ R C + P KE +G + + KI+V +P
Sbjct: 152 CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPH 211
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
+ + +LR +F++FG + + +D + RGF ++ + +A+ G +
Sbjct: 212 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 271
Query: 272 LQCQKAA--EGKNRTSSNSSSS 291
++ ++A + KN+ + +S
Sbjct: 272 VEVKRAEPRDSKNQAPGQAGAS 293
>gi|330939341|ref|XP_003305832.1| hypothetical protein PTT_18782 [Pyrenophora teres f. teres 0-1]
gi|311316974|gb|EFQ86065.1| hypothetical protein PTT_18782 [Pyrenophora teres f. teres 0-1]
Length = 562
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT+ESL + F GE+ EC ++ D TG+++GF F+ FK K V +
Sbjct: 106 KMFIGGLNWETTEESLKNYFSQFGEVSECTVMRDSATGRSRGFGFLTFKDPK-CVNIVMV 164
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGER--KIYVSNVPRDVEKEKLRGFFERF 225
+ ++ ++ + A +EQ ER KI+V V ++ +E FF++F
Sbjct: 165 KEHYLDGKIIDPKRAIP------REEQ------ERTSKIFVGGVSQEATEEDFTNFFKQF 212
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G + + D TG+ RGF + L P ++ G Q++ ++A
Sbjct: 213 GRVVDATLMMDKETGRPRGFGFVTFDGDAAVDATLRAPLQIL-GKQIEVKRA 263
>gi|348688053|gb|EGZ27867.1| hypothetical protein PHYSODRAFT_392284 [Phytophthora sojae]
Length = 183
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 85 AATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVT 144
+A K L+ + TA+ +SQRK+ VHGL +T L F G++E+ ++ DK +
Sbjct: 2 SALKYHELYADLTTTAENVLSQRKVAVHGLAPETETIKLKQRFITFGKVEDATIIRDKSS 61
Query: 145 GKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKI 204
GK+ GF ++ F KAA +A++ + KV+ LA+ G K+ A +R +
Sbjct: 62 GKSLGFGYVTFAESKAAQQAIRTLKIKVDGNYVKYNLAAEG------KKASADLSPDRTL 115
Query: 205 YVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263
V + + + L FE+FGE+E+ + + +T S+G+ ++ GA AL+ P
Sbjct: 116 MVRALAKKTSNDTLWKAFEKFGEVESTHVVRNRSTNASKGYGFVTFREKAGADSALKTP 174
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 100 ADRDVS-QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
A D+S R + V L T+ ++L AF GE+E +V ++ T +KG+ F+ F+ +
Sbjct: 105 ASADLSPDRTLMVRALAKKTSNDTLWKAFEKFGEVESTHVVRNRSTNASKGYGFVTFREK 164
Query: 159 KAAVKALKNPQRKVNNRM 176
A ALK P K++ R+
Sbjct: 165 AGADSALKTPTMKIDVRL 182
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+RK+ V + + E KL+ F FG++E I D ++GKS GF + + A++A+
Sbjct: 23 QRKVAVHGLAPETETIKLKQRFITFGKVEDATIIRDKSSGKSLGFGYVTFAESKAAQQAI 82
Query: 261 EEPQKMFEGHQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPML 307
+ +G+ ++ AAEGK ++ S + + +K L
Sbjct: 83 RTLKIKVDGNYVKYNLAAEGKKASADLSPDRTLMVRALAKKTSNDTL 129
>gi|442621132|ref|NP_001262959.1| musashi, isoform E [Drosophila melanogaster]
gi|440217892|gb|AGB96339.1| musashi, isoform E [Drosophila melanogaster]
Length = 618
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 183 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 242
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 243 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 295
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 296 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 350
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 188 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 247
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 248 PIHTLDGKKID-PKHATPKNR 267
>gi|195338791|ref|XP_002036007.1| GM16252 [Drosophila sechellia]
gi|195577167|ref|XP_002078444.1| Hrb27C [Drosophila simulans]
gi|194129887|gb|EDW51930.1| GM16252 [Drosophila sechellia]
gi|194190453|gb|EDX04029.1| Hrb27C [Drosophila simulans]
Length = 421
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFGRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNN 293
+SNN
Sbjct: 179 GQNSNN 184
>gi|119480409|ref|XP_001260233.1| heterogeneous nuclear ribonucleoprotein HRP1 [Neosartorya fischeri
NRRL 181]
gi|119408387|gb|EAW18336.1| heterogeneous nuclear ribonucleoprotein HRP1 [Neosartorya fischeri
NRRL 181]
Length = 462
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL W+TT +SL F GE++EC ++ D TG+++GF F+ FK K V +
Sbjct: 10 RKMFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPK-TVNTVM 68
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ ++ ++ + A P +++ + KI+V V ++ +++ + FF +FG
Sbjct: 69 VKEHYLDGKIIDPKRAI-----PRDEQEKTS-----KIFVGGVSQEATEQEFKEFFTQFG 118
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263
+ + D TG+ RGF + + AL P
Sbjct: 119 RVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRP 155
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA 160
D KIFV G+ + T++ F G + + L+IDK TG+ +GF F+ F + A
Sbjct: 88 DEQEKTSKIFVGGVSQEATEQEFKEFFTQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAA 147
Query: 161 AVKALKNP 168
AL P
Sbjct: 148 VEAALSRP 155
>gi|214241|gb|AAA49742.1| ribonucleoprotein A1b [Xenopus laevis]
Length = 351
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL F G + +C ++ D + +++GF F+ + + A+
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + ++ G +KI+V + D E++ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA ++ + K + + H Q +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKA 180
>gi|240848911|ref|NP_001155674.1| heterogeneous nuclear ribonucleoprotein-like [Acyrthosiphon pisum]
gi|239790977|dbj|BAH72014.1| ACYPI006706 [Acyrthosiphon pisum]
Length = 283
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 15/174 (8%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
RK+FV GL W+TT++ L F GEI L D TG+++GFAFI+FK+ V
Sbjct: 31 DDRKLFVGGLSWETTEKELKEHFVQYGEITNISLKTDPATGRSRGFAFIIFKS----VDG 86
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
L NN A+ G + + A A+ E K++V +P DV ++++ FF +
Sbjct: 87 L-------NNAFAAGDHVI---NGKKIDPKKAKAKQE-KVFVGGLPSDVTNDEIKEFFGK 135
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+G I + FD + +G+ Y++ + + + ++ +G ++ +KAA
Sbjct: 136 WGVIVNLEVPFDKMKNQRKGYCFITYESSDKVQDLFKTAKQTIKGKEVDVKKAA 189
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
+ +RK++V + + +++L+ F ++GEI + D TG+SRGFA ++K+V+G
Sbjct: 30 EDDRKLFVGGLSWETTEKELKEHFVQYGEITNISLKTDPATGRSRGFAFIIFKSVDGLNN 89
Query: 259 ALEEPQKMFEGHQLQCQKA 277
A + G ++ +KA
Sbjct: 90 AFAAGDHVINGKKIDPKKA 108
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 94 DHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAK 148
DH++ D Q K+FV GL D T + + FG G I ++ DK+ + K
Sbjct: 95 DHVINGKKIDPKKAKAKQEKVFVGGLPSDVTNDEIKEFFGKWGVIVNLEVPFDKMKNQRK 154
Query: 149 GFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGP 189
G+ FI +++ K ++ + + + A+ P P
Sbjct: 155 GYCFITYESSDKVQDLFKTAKQTIKGKEVDVKKAAPKPANP 195
>gi|148697232|gb|EDL29179.1| mCG1035404 [Mus musculus]
Length = 239
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|403283527|ref|XP_003933170.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Saimiri boliviensis boliviensis]
Length = 299
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF FI + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFIRYATAEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI++ + D E+ LR +FE++G
Sbjct: 74 ARPHKVHGRVVEPKRAVSRED----SQRPGAHLTVKKIFLGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + + + GH + +KA
Sbjct: 130 KIEVIEIITDRGSGKKRGFAFVAFDDHDSVDMIVIQKYHTVNGHNCEVRKA 180
>gi|296209046|ref|XP_002751367.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
3 [Callithrix jacchus]
Length = 320
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHSEQWGTLTDCVVMRDANTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDNEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|413938951|gb|AFW73502.1| hypothetical protein ZEAMMB73_228737 [Zea mays]
Length = 321
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T E L F GEI E ++ D+ TG++KG+ F++F+ AA
Sbjct: 43 DTTLTKVFVGGLAWETPSEGLRQHFDVYGEILEAVVITDRETGRSKGYGFVIFRDPDAAA 102
Query: 163 KALKNPQRKVNNRMASCQLASVGP 186
+A++NP + R A+C +A+ GP
Sbjct: 103 RAVQNPNPVIAGRRANCNIAAFGP 126
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + E LR F+ +GEI + D TG+S+G+ +++ + A +A++
Sbjct: 48 KVFVGGLAWETPSEGLRQHFDVYGEILEAVVITDRETGRSKGYGFVIFRDPDAAARAVQN 107
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + G + C AA G R
Sbjct: 108 PNPVIAGRRANCNIAAFGPPR 128
>gi|431921599|gb|ELK18951.1| Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3
[Pteropus alecto]
Length = 298
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 10/167 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 23 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 82
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQG---AAAQGERKIYVSNVPRDVEKEKLRGFFE 223
KV+ R+ V P +E A +KI+V + D E+ LR +FE
Sbjct: 83 ARPHKVDGRV-------VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 135
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGH 270
++G+IE I D +GK RGFA + + K + + GH
Sbjct: 136 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGH 182
>gi|388858447|emb|CCF48041.1| related to HRP1-subunit of cleavage factor I [Ustilago hordei]
Length = 578
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 29/215 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK- 166
K+FV GL WDTT++SL F GEI C ++ D +TG+++GFAF+ F KA +
Sbjct: 167 KMFVGGLNWDTTEDSLRRYFSQFGEIGHCTIMRDNLTGRSRGFAFLNFVDPKAVNTVMVR 226
Query: 167 ---------NPQRKVNNRMASCQLASVGPTGPGVKEQG--------AAAQGERKIYVSNV 209
+P+R + A + G +K++V +
Sbjct: 227 EHYLDGKVIDPKRAIPRPQGGGSHQGQQQQQHPSGGNNYNINTNFSAPSSGGQKLFVGGL 286
Query: 210 PRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEG 269
P + R FFE+FG + D TGK RGF Y + L +F+G
Sbjct: 287 PASITPVTFRQFFEQFGPLSECTCMMDRETGKPRGFGFLTYVDDASLQTVLNTHPIVFDG 346
Query: 270 HQLQCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQ 304
++ ++A S N+ + +++QQ+
Sbjct: 347 KEVDVKRA-----------QSKNDPQSLQMRRQQR 370
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250
E K++V + D ++ LR +F +FGEI I D TG+SRGFA +
Sbjct: 165 EGKMFVGGLNWDTTEDSLRRYFSQFGEIGHCTIMRDNLTGRSRGFAFLNF 214
>gi|226501312|ref|NP_001146912.1| RNA-binding region-containing protein 1 [Zea mays]
gi|195605124|gb|ACG24392.1| RNA-binding region-containing protein 1 [Zea mays]
Length = 339
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T E L F G+I E ++ D++TG++KG+ F+ F+ +AA
Sbjct: 26 DTTLTKVFVGGLAWETPSEGLRQHFERYGDILEAVVITDRLTGRSKGYGFVTFREPEAAR 85
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQG 200
+A+++P + R A+C +AS+GP P + G A +G
Sbjct: 86 RAVQDPNPTIAGRRANCNIASLGPPRPA--QPGVAGRG 121
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + E LR FER+G+I + D TG+S+G+ ++ E AR+A+++
Sbjct: 31 KVFVGGLAWETPSEGLRQHFERYGDILEAVVITDRLTGRSKGYGFVTFREPEAARRAVQD 90
Query: 263 PQKMFEGHQLQCQKAAEGKNRTS 285
P G + C A+ G R +
Sbjct: 91 PNPTIAGRRANCNIASLGPPRPA 113
>gi|194862724|ref|XP_001970091.1| GG10443 [Drosophila erecta]
gi|195471631|ref|XP_002088106.1| GE14209 [Drosophila yakuba]
gi|190661958|gb|EDV59150.1| GG10443 [Drosophila erecta]
gi|194174207|gb|EDW87818.1| GE14209 [Drosophila yakuba]
Length = 421
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFGRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNN 293
+SNN
Sbjct: 179 GQNSNN 184
>gi|453084738|gb|EMF12782.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 536
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT +SL F GE+ EC ++ D TG+++GF F+ F+ K V +
Sbjct: 103 KMFIGGLNWETTDQSLKDYFSQFGEVIECTVMRDGATGRSRGFGFLTFRDPK-TVNTVMV 161
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ ++ ++ + A P +++ A KI+V V +D ++ FF++FG
Sbjct: 162 KEHSLDGKLIDPKRAI-----PRDEQERTA-----KIFVGGVSQDATEQDFEAFFQKFGR 211
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263
+ + D TG+ RGF + + LE P
Sbjct: 212 VLDATLMMDKDTGRPRGFGFVTFDNEMAVERTLEGP 247
>gi|21430706|gb|AAM51031.1| RH49436p [Drosophila melanogaster]
Length = 634
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 199 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 258
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 259 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 311
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 312 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 366
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 263
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 264 PIHTLDGKKID-PKHATPKNR 283
>gi|66804019|gb|AAY56658.1| heterogeneous nuclear ribonucleoprotein [Drosophila simulans]
Length = 421
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFGRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNN 293
+SNN
Sbjct: 179 GQNSNN 184
>gi|226507294|ref|NP_001146341.1| uncharacterized protein LOC100279918 [Zea mays]
gi|219886705|gb|ACL53727.1| unknown [Zea mays]
Length = 321
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T E L F GEI E ++ D+ TG++KG+ F++F+ AA
Sbjct: 43 DTTLTKVFVGGLAWETPSEGLRQHFDVYGEILEAVVITDRETGRSKGYGFVIFRDPDAAA 102
Query: 163 KALKNPQRKVNNRMASCQLASVGP 186
+A++NP + R A+C +A+ GP
Sbjct: 103 RAVQNPNPVIAGRRANCNIAAFGP 126
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + E LR F+ +GEI + D TG+S+G+ +++ + A +A++
Sbjct: 48 KVFVGGLAWETPSEGLRQHFDVYGEILEAVVITDRETGRSKGYGFVIFRDPDAAARAVQN 107
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + G + C AA G R
Sbjct: 108 PNPVIAGRRANCNIAAFGPPR 128
>gi|41053816|ref|NP_956789.1| heterogeneous nuclear ribonucleoprotein A1 [Danio rerio]
gi|33416839|gb|AAH55499.1| Zgc:66127 [Danio rerio]
Length = 388
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 12/187 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL + F G + +C ++ D T +++GF F+ + + A+
Sbjct: 15 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMD 74
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGA---AAQGERKIYVSNVPRDVEKEKLRGFFE 223
KV+ R +V P +E + A +K++V + D ++E LR +F
Sbjct: 75 ARPHKVDGR-------AVEPKRAVSREDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFG 127
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA--AEGK 281
+FG+I+ I + + K RGFA + + + + + GH + +KA EG
Sbjct: 128 QFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKALSREGM 187
Query: 282 NRTSSNS 288
NR S NS
Sbjct: 188 NRVSMNS 194
>gi|17864096|ref|NP_524577.1| musashi, isoform A [Drosophila melanogaster]
gi|541667|emb|CAA55897.1| musashi [Drosophila melanogaster]
gi|15291915|gb|AAK93226.1| LD31631p [Drosophila melanogaster]
gi|23172305|gb|AAF56478.2| musashi, isoform A [Drosophila melanogaster]
Length = 606
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 171 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 230
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 231 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 283
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 284 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 338
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 176 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 235
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 236 PIHTLDGKKID-PKHATPKNR 255
>gi|413938950|gb|AFW73501.1| hypothetical protein ZEAMMB73_228737 [Zea mays]
Length = 318
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T E L F GEI E ++ D+ TG++KG+ F++F+ AA
Sbjct: 43 DTTLTKVFVGGLAWETPSEGLRQHFDVYGEILEAVVITDRETGRSKGYGFVIFRDPDAAA 102
Query: 163 KALKNPQRKVNNRMASCQLASVGP 186
+A++NP + R A+C +A+ GP
Sbjct: 103 RAVQNPNPVIAGRRANCNIAAFGP 126
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + E LR F+ +GEI + D TG+S+G+ +++ + A +A++
Sbjct: 48 KVFVGGLAWETPSEGLRQHFDVYGEILEAVVITDRETGRSKGYGFVIFRDPDAAARAVQN 107
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + G + C AA G R
Sbjct: 108 PNPVIAGRRANCNIAAFGPPR 128
>gi|386766504|ref|NP_001247304.1| musashi, isoform D [Drosophila melanogaster]
gi|383292950|gb|AFH06621.1| musashi, isoform D [Drosophila melanogaster]
Length = 605
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 170 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 229
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 230 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 282
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 283 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 337
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 175 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 234
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 235 PIHTLDGKKID-PKHATPKNR 254
>gi|195349467|ref|XP_002041266.1| GM10251 [Drosophila sechellia]
gi|194122961|gb|EDW45004.1| GM10251 [Drosophila sechellia]
Length = 634
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 199 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 258
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 259 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 311
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 312 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 366
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 263
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 264 PIHTLDGKKID-PKHATPKNR 283
>gi|357628443|gb|EHJ77777.1| hypothetical protein KGM_04418 [Danaus plexippus]
Length = 414
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 5/175 (2%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T+QE+L F G++ +C ++ + +G+++GF F+ F
Sbjct: 9 DDEKGKLFVGGLSWETSQENLQRYFSRYGDVIDCVVMKNSESGRSRGFGFVTFAEPSLVN 68
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
L+N +++ R + P P ++ G K+++ +P ++ + LR FF
Sbjct: 69 VVLQNGPHQLDGRTIDPK-----PCNPRTLQKPKRGGGYPKVFLGGLPSNITETDLRVFF 123
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
R+G++ I +D KSRGF ++ + +E G Q++ ++A
Sbjct: 124 GRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVERVTQEHFINLNGKQVEIKRA 178
>gi|220942596|gb|ACL83841.1| msi-PA [synthetic construct]
Length = 607
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 171 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 230
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 231 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 283
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 284 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 338
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 176 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 235
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 236 PIHTLDGKKID-PKHATPKNR 255
>gi|26330019|dbj|BAC28748.1| unnamed protein product [Mus musculus]
Length = 326
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQE L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAISTLN-GLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWRMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|255717440|ref|XP_002555001.1| KLTH0F18766p [Lachancea thermotolerans]
gi|238936384|emb|CAR24564.1| KLTH0F18766p [Lachancea thermotolerans CBS 6340]
Length = 588
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD+ K+F+ GL W+TT+++L F G++ + K++ D TG+++GF F+ F +
Sbjct: 205 RDIC--KMFIGGLNWETTEDNLKDYFSKYGQVTDLKIMRDNATGRSRGFGFLTFAEASSV 262
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
+ +K Q ++ ++ + A +EQ KI+V + DV ++ F
Sbjct: 263 DEVVKT-QHILDGKVIDPKRAIP------REEQDKTG----KIFVGGIGPDVRPKEFEEF 311
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
F ++G I + D TG+SRGF Y T + + E F+G +++ ++A
Sbjct: 312 FSQWGTIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCENKFIEFKGKRIEIKRA 367
>gi|349804307|gb|AEQ17626.1| putative heterogeneous nuclear ribonucleoprotein A3 [Hymenochirus
curtipes]
Length = 249
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 10/174 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G++ +C ++ D T +++GF F+ + + A+
Sbjct: 14 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMT 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGA---AAQGERKIYVSNVPRDVEKEKLRGFFE 223
KV+ R+ V P +E A A +KI+V + D E+ LR +FE
Sbjct: 74 ARPHKVDGRV-------VEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFE 126
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 127 GYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 180
>gi|171451950|dbj|BAG15903.1| musashi [Dugesia japonica]
Length = 473
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 20/252 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL TT E+L S F GEI+E ++ D V +++GF F+ F +K LK
Sbjct: 44 KLFVGGLNPTTTSEALQSYFSQFGEIKEFMVMRDIVHKRSRGFGFVTFTDYNGVIKVLKQ 103
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++++ +LA P E+ +A +KI++ + E++R +F R+GE
Sbjct: 104 ENHILDSKKIDPKLAV--PKSICQPEKISART--KKIFIGGIATSSTVEEIRQYFNRYGE 159
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+E + D T + RGF + + A + + ++ +KA + ++SN
Sbjct: 160 VENCELMMDKATNRHRGFGFVTFLDEDVAEQICQIHYHNINNKMVEAKKALPKELLSTSN 219
Query: 288 SS--SSNNQAQM---MIQKQQQPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHP 342
+S S N Q+ ++Q P Q N + F P +H
Sbjct: 220 TSIKSENKSLQVPLAILQNNISPTFSMNNILQQNNGS-----------FSPFLTLPYLHT 268
Query: 343 LYGGFLVNPGLI 354
G L+NP LI
Sbjct: 269 NSGPLLLNPNLI 280
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIF+ G+ +T E + F GE+E C+L++DK T + +GF F+ F A + +
Sbjct: 134 KKIFIGGIATSSTVEEIRQYFNRYGEVENCELMMDKATNRHRGFGFVTFLDEDVAEQICQ 193
Query: 167 NPQRKVNNRMASCQLA 182
+NN+M + A
Sbjct: 194 IHYHNINNKMVEAKKA 209
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 190 GVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFV 249
++E A++ K++V + E L+ +F +FGEI+ + DI +SRGF
Sbjct: 31 SLEEISASSNEPCKLFVGGLNPTTTSEALQSYFSQFGEIKEFMVMRDIVHKRSRGFGFVT 90
Query: 250 YKTVEGARKALEEPQKMFEGHQLQCQK 276
+ G K L++ E H L +K
Sbjct: 91 FTDYNGVIKVLKQ-----ENHILDSKK 112
>gi|410896922|ref|XP_003961948.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like [Takifugu rubripes]
Length = 336
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 101/206 (49%), Gaps = 14/206 (6%)
Query: 101 DRDVSQ----RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
DR++ + RK+F+ GL ++TT+ESL + F G + +C ++ + +++GF F+ +
Sbjct: 3 DRELREPEQLRKLFIGGLSFETTEESLRAHFEKWGSLTDCVVMREPACKRSRGFGFVTYS 62
Query: 157 TRKAAVKALKNPQRKVNNRMASCQ--LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVE 214
+ +A+K KV+ R+ + ++ PG A +KI+V + D E
Sbjct: 63 CLREVDEAMKARPHKVDGRVVEPKRAVSREDSNKPG------AHLSVKKIFVGGIKEDTE 116
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274
++++R +FE++G+IE I + ++GK RGF + + K + + H +
Sbjct: 117 EDQIRDYFEKYGKIECVDIMEERSSGKKRGFCFVTFDDHDTVDKIVAQKYHTINLHNCEV 176
Query: 275 QKAAEGK--NRTSSNSSSSNNQAQMM 298
+KA + N SSN S M
Sbjct: 177 RKALSKQEMNAISSNRGKSGGSGNFM 202
>gi|125984017|ref|XP_001355773.1| GA10287 [Drosophila pseudoobscura pseudoobscura]
gi|54644090|gb|EAL32832.1| GA10287 [Drosophila pseudoobscura pseudoobscura]
Length = 421
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFGRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNN 293
+SNN
Sbjct: 179 GQNSNN 184
>gi|28571891|ref|NP_733108.2| musashi, isoform B [Drosophila melanogaster]
gi|386766502|ref|NP_001247303.1| musashi, isoform C [Drosophila melanogaster]
gi|442621134|ref|NP_001262960.1| musashi, isoform F [Drosophila melanogaster]
gi|28381465|gb|AAN14056.2| musashi, isoform B [Drosophila melanogaster]
gi|383292949|gb|AFH06620.1| musashi, isoform C [Drosophila melanogaster]
gi|383505544|gb|AFH36351.1| FI20028p1 [Drosophila melanogaster]
gi|440217893|gb|AGB96340.1| musashi, isoform F [Drosophila melanogaster]
Length = 634
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 199 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 258
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 259 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 311
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 312 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 366
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 263
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 264 PIHTLDGKKID-PKHATPKNR 283
>gi|22328624|ref|NP_193166.2| ribonucleoprotein 1 [Arabidopsis thaliana]
gi|18152698|emb|CAC83517.1| ribonucleoprotein 1 [Arabidopsis thaliana]
gi|110740752|dbj|BAE98475.1| ribonucleoprotein like protein [Arabidopsis thaliana]
gi|332658011|gb|AEE83411.1| ribonucleoprotein 1 [Arabidopsis thaliana]
Length = 411
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 25/192 (13%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF------- 155
D Q K+FV G+ W+T ++ L F GE+ + ++ DK+TG+ +GF F++F
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 156 ---------KTRKAAVK-ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIY 205
TR+ VK A+ +++V+ R + + G A +KI+
Sbjct: 62 RVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSR--------SSGGDAYNKTKKIF 113
Query: 206 VSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQK 265
V +P + E+ R +FE +G + I +D T + RGF + + + L +
Sbjct: 114 VGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFH 173
Query: 266 MFEGHQLQCQKA 277
G Q++ ++A
Sbjct: 174 DLSGKQVEVKRA 185
>gi|195036632|ref|XP_001989774.1| GH18982 [Drosophila grimshawi]
gi|193893970|gb|EDV92836.1| GH18982 [Drosophila grimshawi]
Length = 641
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 195 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVD 254
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 255 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 307
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 308 SQFGAVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 362
>gi|168061455|ref|XP_001782704.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665797|gb|EDQ52469.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 84
Score = 81.6 bits (200), Expect = 7e-13, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 54/84 (64%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
+D RK+FV GL W+T+ +L AF GE+EE ++ DK TGK++GF F+ FK +A
Sbjct: 1 KDPVHRKLFVRGLAWETSSVALREAFEQYGEVEEACVITDKGTGKSRGFGFVTFKHMDSA 60
Query: 162 VKALKNPQRKVNNRMASCQLASVG 185
+ALK P + ++ R+ C LAS G
Sbjct: 61 QRALKEPSKNIDGRITVCNLASAG 84
Score = 58.2 bits (139), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RK++V + + LR FE++GE+E + D TGKSRGF +K ++ A++AL+
Sbjct: 6 RKLFVRGLAWETSSVALREAFEQYGEVEEACVITDKGTGKSRGFGFVTFKHMDSAQRALK 65
Query: 262 EPQKMFEGHQLQCQKAAEG 280
EP K +G C A+ G
Sbjct: 66 EPSKNIDGRITVCNLASAG 84
>gi|317142958|ref|XP_001819217.2| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus oryzae
RIB40]
Length = 557
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT +SL F GE++EC ++ D TG+++GF F+ F+ K V +
Sbjct: 112 KMFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDPK-TVNTVMV 170
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ ++ ++ + A P +++ + KI+V V ++ ++ + FF +FG
Sbjct: 171 KEHYLDGKIIDPKRAI-----PRDEQEKTS-----KIFVGGVSQEANEQDFKQFFMQFGR 220
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ + D TG+ RGF + + AL P ++ G ++ +KA
Sbjct: 221 VVDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRPLEIL-GKPIEVKKA 269
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 102 RDVSQR--KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
RD ++ KIFV G+ + ++ F G + + L+IDK TG+ +GF F+ F +
Sbjct: 188 RDEQEKTSKIFVGGVSQEANEQDFKQFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDSEA 247
Query: 160 AAVKALKNP 168
A AL P
Sbjct: 248 AVEAALSRP 256
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 188 GPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAI 247
G G+KE G K+++ + + + L+ +F +FGE++ + D TG+SRGF
Sbjct: 104 GTGIKEDG-------KMFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGF 156
Query: 248 FVYK 251
++
Sbjct: 157 LTFR 160
>gi|159129147|gb|EDP54261.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus fumigatus
A1163]
Length = 608
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT +SL F GE++EC ++ D TG+++GF F+ FK K
Sbjct: 106 KMFIGGLNWETTDQSLRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKT------- 158
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGER----KIYVSNVPRDVEKEKLRGFFE 223
VN M G + + A + E+ KI+V V ++ +++ + FF
Sbjct: 159 ----VNTVMVKEHYLD----GKIIDPKRAIPRDEQEKTSKIFVGGVSQEATEQEFKEFFT 210
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG + + D TG+ RGF + + AL P + G ++ +KA
Sbjct: 211 QFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRPLAIC-GKPIEVKKA 263
>gi|440901911|gb|ELR52772.1| Heterogeneous nuclear ribonucleoprotein A3, partial [Bos grunniens
mutus]
Length = 182
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 6 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 65
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 66 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 116
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 117 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 172
>gi|348521586|ref|XP_003448307.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Oreochromis niloticus]
Length = 332
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL + F G + +C ++ D + +++GF F+ + + + A+
Sbjct: 14 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSVQEVDAAMS 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSNRPGAHITVKKIFVGGIKEDTEESHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++FG+IE I D TGK RGFA + + + + + H + +KA
Sbjct: 126 QQFGKIEVIDIMTDRNTGKKRGFAFVTFDDHDSVDRIVIQKYHTINSHNCEVRKA 180
>gi|320581591|gb|EFW95811.1| Subunit of cleavage factor I [Ogataea parapolymorpha DL-1]
Length = 431
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 94/188 (50%), Gaps = 12/188 (6%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
Q K+F+ GL W+TT+ES+ + F G++ + ++ D TG+++GF F+ F + + +
Sbjct: 104 DQGKMFIGGLNWETTEESMKNYFSQFGDVIDLTIMKDNATGRSRGFGFLTFASSSSVDEV 163
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
LK ++ ++ + A +EQ KI+V V +V + + +F++
Sbjct: 164 LKK-THVLDGKLIDPKRAIP------KEEQDKTG----KIFVGGVAPEVTEAEFTEYFQQ 212
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284
FG I + D TG+SRG+ Y + + + + +F G ++ K AE +N+
Sbjct: 213 FGNIIDSQLMLDKDTGRSRGYGFVTYDSPDAVDRVTQNKYVLFHGKNMEI-KRAEPRNQQ 271
Query: 285 SSNSSSSN 292
+ SS SN
Sbjct: 272 KAGSSYSN 279
>gi|225438019|ref|XP_002274734.1| PREDICTED: uncharacterized protein LOC100263471 [Vitis vinifera]
Length = 441
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV G+ WDTT+E L F G++ + ++ DK TG+ +GF F+VF + +
Sbjct: 2 DSDEGKLFVGGIPWDTTEEKLKEYFNQYGDVTQTVIMRDKTTGRPRGFGFVVF-ADPSVL 60
Query: 163 KALKNPQRKVNNRMASCQLA----SVGPTGPGVKEQGAAAQG------ERKIYVSNVPRD 212
A+ + ++ R + A + PG G ++ G +KI+V +P
Sbjct: 61 DAVLQEKHTIDGRTVEAKRALSREEQHTSRPGNSNTGRSSSGMGGNFKTKKIFVGGLPST 120
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
+ +E R +FE +G + + +D T + RGF + T + + L + G +
Sbjct: 121 LTEEGFRQYFETYGHVTDVVVMYDQNTQRPRGFGFISFDTEDAVDRVLHKTFHDLNGKLV 180
Query: 273 QCQKA 277
+ ++A
Sbjct: 181 EVKRA 185
>gi|397520388|ref|XP_003830301.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Pan paniscus]
Length = 320
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + C ++ D T +++GF F+ + + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTACVVMRDPNTKRSRGFEFVTYAAVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|432865306|ref|XP_004070518.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Oryzias latipes]
Length = 329
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL + F G + +C ++ D + +++GF F+ + + + A+
Sbjct: 13 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSVQEVDAAMS 72
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 73 ARPHKVDGRVVEPKRA--------VSREDSNRPGAHITVKKIFVGGIKEDTEESHLRDYF 124
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++FG+IE I D TGK RGFA + + + + + H + +KA
Sbjct: 125 QQFGKIEVIDIMTDRNTGKKRGFAFVTFDDHDSVDRIVIQKYHTINSHNCEVRKA 179
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ +KIFV G+ DT + L F G+IE ++ D+ TGK +GFAF+ F + +
Sbjct: 101 ITVKKIFVGGIKEDTEESHLRDYFQQFGKIEVIDIMTDRNTGKKRGFAFVTFDDHDSVDR 160
Query: 164 ALKNPQRKVNNRMASCQL 181
+ +N+ +C++
Sbjct: 161 IVIQKYHTINSH--NCEV 176
>gi|94482853|gb|ABF22468.1| heterogeneous nuclear ribonucleoprotein A3 [Takifugu rubripes]
Length = 341
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 10/196 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT+ESL + F G + +C ++ + +++GF F+ + + +A+K
Sbjct: 18 RKLFIGGLSFETTEESLRAHFEKWGSLTDCVVMREPACKRSRGFGFVTYSCLREVDEAMK 77
Query: 167 NPQRKVNNRMASCQLA--SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + A PG A +KI+V + D E++++R +FE+
Sbjct: 78 ARPHKVDGRVVEPKRAVSREDSNKPG------AHLSVKKIFVGGIKEDTEEDQIRDYFEK 131
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK--N 282
+G+IE I + ++GK RGF + + K + + H + +KA + N
Sbjct: 132 YGKIECVDIMEERSSGKKRGFCFVTFDDHDTVDKIVAQKYHTINLHNCEVRKALSKQEMN 191
Query: 283 RTSSNSSSSNNQAQMM 298
SSN S M
Sbjct: 192 AISSNRGKSGGSGNFM 207
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
+S +KIFV G+ DT ++ + F G+IE ++ ++ +GK +GF F+ F K
Sbjct: 106 LSVKKIFVGGIKEDTEEDQIRDYFEKYGKIECVDIMEERSSGKKRGFCFVTFDDHDTVDK 165
Query: 164 ALKNPQRKVNNRMASCQL 181
+ +N + +C++
Sbjct: 166 IVAQKYHTIN--LHNCEV 181
>gi|449445662|ref|XP_004140591.1| PREDICTED: uncharacterized protein LOC101210354 [Cucumis sativus]
gi|449487325|ref|XP_004157571.1| PREDICTED: uncharacterized LOC101210354 [Cucumis sativus]
Length = 286
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + KIFV GL W+T + ++ F GEI E ++ DK TG++KG+ F+ FK AA+
Sbjct: 27 DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
Query: 163 KALKNPQRKVNNRMASCQLASVG 185
+A +NP ++ R A+C LAS+G
Sbjct: 87 RACQNPSPVIDGRRANCNLASLG 109
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V + + ++ +R +FE+FGEI + D TG+S+G+ +K + A +A +
Sbjct: 32 KIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQN 91
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + +G + C A+ G ++
Sbjct: 92 PSPVIDGRRANCNLASLGAHK 112
>gi|391863705|gb|EIT73005.1| RNA-binding protein [Aspergillus oryzae 3.042]
Length = 545
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT +SL F GE++EC ++ D TG+++GF F+ F+ K V +
Sbjct: 100 KMFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDPK-TVNTVMV 158
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ ++ ++ + A P +++ + KI+V V ++ ++ + FF +FG
Sbjct: 159 KEHYLDGKIIDPKRAI-----PRDEQEKTS-----KIFVGGVSQEANEQDFKQFFMQFGR 208
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ + D TG+ RGF + + AL P ++ G ++ +KA
Sbjct: 209 VVDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRPLEIL-GKPIEVKKA 257
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 102 RDVSQR--KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
RD ++ KIFV G+ + ++ F G + + L+IDK TG+ +GF F+ F +
Sbjct: 176 RDEQEKTSKIFVGGVSQEANEQDFKQFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDSEA 235
Query: 160 AAVKALKNP 168
A AL P
Sbjct: 236 AVEAALSRP 244
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 188 GPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAI 247
G G+KE G K+++ + + + L+ +F +FGE++ + D TG+SRGF
Sbjct: 92 GTGIKEDG-------KMFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGF 144
Query: 248 FVYK 251
++
Sbjct: 145 LTFR 148
>gi|296083709|emb|CBI23698.3| unnamed protein product [Vitis vinifera]
Length = 388
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 27/193 (13%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF------- 155
D Q K+F+ G+ W+T+++ L FG GE+ + ++ DK TG+ +GF F+VF
Sbjct: 2 DSDQGKLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILD 61
Query: 156 -----------KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKI 204
+T +A +AL +++ ++R + A G VK +KI
Sbjct: 62 RVLQEKHIIDGRTVEAK-RALSREEQQTSSRAGNFNSARNSGGGGNVK--------TKKI 112
Query: 205 YVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264
+V +P + +E R +FE FG + + +D +T + RGF + T + + L +
Sbjct: 113 FVGGLPPTLSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTF 172
Query: 265 KMFEGHQLQCQKA 277
G Q++ ++A
Sbjct: 173 HDLNGKQVEVKRA 185
>gi|392863540|gb|EJB10655.1| musashi 1, variant [Coccidioides immitis RS]
Length = 608
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT +SL F GE++EC ++ D TG+++GF F+ FK K V +
Sbjct: 113 KMFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDGATGRSRGFGFLTFKDPK-TVNTVMV 171
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ ++ ++ + A P +++ + KI+V V +D ++ + FF +FG
Sbjct: 172 KEHYLDGKIIDPKRAI-----PRDEQERTS-----KIFVGGVSQDANEQDFKKFFMQFGR 221
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ + D TG+ RGF + + L +P ++ G ++ +KA
Sbjct: 222 VVDATLMIDKDTGRPRGFGFVTFDSEAAVEACLSQPLEIL-GKPIEVKKA 270
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 102 RDVSQR--KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
RD +R KIFV G+ D ++ F G + + L+IDK TG+ +GF F+ F +
Sbjct: 189 RDEQERTSKIFVGGVSQDANEQDFKKFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDSEA 248
Query: 160 AAVKALKNP 168
A L P
Sbjct: 249 AVEACLSQP 257
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 186 PTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGF 245
P G G+KE G K+++ + + + L+ +F +FGE++ + D TG+SRGF
Sbjct: 103 PQGTGIKEDG-------KMFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDGATGRSRGF 155
Query: 246 AIFVYK 251
+K
Sbjct: 156 GFLTFK 161
>gi|322792842|gb|EFZ16675.1| hypothetical protein SINV_08972 [Solenopsis invicta]
Length = 335
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 15/175 (8%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ RK+FV GL W+TT + L F G+IE + D TG+++GFAFIVF ++ K
Sbjct: 53 LNDRKLFVGGLSWETTDKELREHFSAYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDK 112
Query: 164 ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223
+ +NN+ V P ++ A G KI+V + ++ + ++ FF
Sbjct: 113 IMSAGDHVINNK-------KVDP------KKAKARHG--KIFVGGLSTELSDDDIKNFFS 157
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+FG I + FD T + +GF +++ + + L+ ++ G ++ +KA
Sbjct: 158 QFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTSKQTINGKEVDVKKAT 212
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + KI DH++ D KIFV GL + + + + + F G I E +
Sbjct: 107 AESLDKIMSAGDHVINNKKVDPKKAKARHGKIFVGGLSTELSDDDIKNFFSQFGTIVEVE 166
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTG 188
+ DK + KGF FI F++ + + LK ++ +N + + A+ P G
Sbjct: 167 MPFDKTKNQRKGFCFITFESEQVVNELLKTSKQTINGKEVDVKKATPKPDG 217
>gi|317142960|ref|XP_003189459.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus oryzae
RIB40]
Length = 531
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT +SL F GE++EC ++ D TG+++GF F+ F+ K V +
Sbjct: 112 KMFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFRDPK-TVNTVMV 170
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ ++ ++ + A P +++ + KI+V V ++ ++ + FF +FG
Sbjct: 171 KEHYLDGKIIDPKRAI-----PRDEQEKTS-----KIFVGGVSQEANEQDFKQFFMQFGR 220
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ + D TG+ RGF + + AL P ++ G ++ +KA
Sbjct: 221 VVDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRPLEIL-GKPIEVKKA 269
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 102 RDVSQR--KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
RD ++ KIFV G+ + ++ F G + + L+IDK TG+ +GF F+ F +
Sbjct: 188 RDEQEKTSKIFVGGVSQEANEQDFKQFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDSEA 247
Query: 160 AAVKALKNP 168
A AL P
Sbjct: 248 AVEAALSRP 256
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 188 GPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAI 247
G G+KE G K+++ + + + L+ +F +FGE++ + D TG+SRGF
Sbjct: 104 GTGIKEDG-------KMFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGF 156
Query: 248 FVYK 251
++
Sbjct: 157 LTFR 160
>gi|70989777|ref|XP_749738.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus fumigatus
Af293]
gi|66847369|gb|EAL87700.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus fumigatus
Af293]
Length = 608
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT +SL F GE++EC ++ D TG+++GF F+ FK K
Sbjct: 106 KMFIGGLNWETTDQSLRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKT------- 158
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGER----KIYVSNVPRDVEKEKLRGFFE 223
VN M G + + A + E+ KI+V V ++ +++ + FF
Sbjct: 159 ----VNTVMVKEHYLD----GKIIDPKRAIPRDEQEKTSKIFVGGVSQEATEQEFKEFFT 210
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG + + D TG+ RGF + + AL P + G ++ +KA
Sbjct: 211 QFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRPLAIC-GKPIEVKKA 263
>gi|194741284|ref|XP_001953119.1| GF17370 [Drosophila ananassae]
gi|190626178|gb|EDV41702.1| GF17370 [Drosophila ananassae]
Length = 343
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFIVF T +A
Sbjct: 53 RD-DDRKLFVGGLSWETTEKELRDHFGKFGEIESINVKTDPQTGRSRGFAFIVFTTTEAI 111
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +N++ V P ++ A G KI+V + ++ E+++ +
Sbjct: 112 DKVSAAEEHIINSK-------KVDP------KKAKARHG--KIFVGGLTTEITDEEIKTY 156
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + L+ P++ G ++ ++A
Sbjct: 157 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDAEQVVTDLLKTPKQKIAGKEVDVKRAT 213
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 78 LIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGE 132
++ A K+ +HI+ + D KIFV GL + T E + + FG G
Sbjct: 103 IVFTTTEAIDKVSAAEEHIINSKKVDPKKAKARHGKIFVGGLTTEITDEEIKTYFGQFGN 162
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
I E ++ DK + KGF FI F + LK P++K+ + + A+ P
Sbjct: 163 IVEVEMPFDKQKSQRKGFCFITFDAEQVVTDLLKTPKQKIAGKEVDVKRATPKP 216
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 188 GPGVKEQGAAAQ--GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGF 245
G + GA+ Q +RK++V + + +++LR F +FGEIE+ + D TG+SRGF
Sbjct: 41 GASENQSGASGQRDDDRKLFVGGLSWETTEKELRDHFGKFGEIESINVKTDPQTGRSRGF 100
Query: 246 AIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
A V+ T E K + + ++ +KA
Sbjct: 101 AFIVFTTTEAIDKVSAAEEHIINSKKVDPKKA 132
>gi|156230072|gb|AAI52222.1| Msi2b protein [Danio rerio]
Length = 168
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A P + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAF--PR----RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTV 253
+E + FD TT + RG ++F + V
Sbjct: 136 VEDAMLMFDKTTNRHRGKSLFCFVCV 161
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K+++ + + LR +F +FGEI + D TT +SRGF + K L +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 263 PQ 264
P
Sbjct: 82 PH 83
>gi|242014750|ref|XP_002428048.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212512567|gb|EEB15310.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 371
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 7/170 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W T+ E L FG G I + ++ D VT +++GF FI F+ + LK
Sbjct: 60 KLFVGGLSWQTSSEKLRQYFGMFGNITDVLIMKDPVTQRSRGFGFITFEEPSSVENVLKV 119
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P ++ + + A+ P G G K G +KI+V V +D ++++ +F +FG+
Sbjct: 120 PVHTLDGKKIDPKHAT--PKGRG-KTNGKT----KKIFVGGVSQDTSSDEVKVYFSQFGK 172
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + D T + RGF ++ E + E + +++C+KA
Sbjct: 173 VEEAVMLMDQQTKRHRGFGFVTFENEETVDRVCEIHFHNIKNKKVECKKA 222
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV G+ DT+ + + F G++EE +++D+ T + +GF F+ F+ + + +
Sbjct: 147 KKIFVGGVSQDTSSDEVKVYFSQFGKVEEAVMLMDQQTKRHRGFGFVTFENEETVDRVCE 206
Query: 167 NPQRKVNNRMASCQLA 182
+ N+ C+ A
Sbjct: 207 IHFHNIKNKKVECKKA 222
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 180 QLASVGPTGPGVKEQGAAAQGER-----KIYVSNVPRDVEKEKLRGFFERFGEIETGPIG 234
+ A+V G G +G+++ G K++V + EKLR +F FG I I
Sbjct: 32 ETAAVNGNGTGSGNEGSSSPGADSTAAGKLFVGGLSWQTSSEKLRQYFGMFGNITDVLIM 91
Query: 235 FDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA-EGKNRTS 285
D T +SRGF ++ L+ P +G ++ + A +G+ +T+
Sbjct: 92 KDPVTQRSRGFGFITFEEPSSVENVLKVPVHTLDGKKIDPKHATPKGRGKTN 143
>gi|119923161|ref|XP_001251082.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like 2
isoform 2 [Bos taurus]
gi|297471765|ref|XP_002685448.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like 2 [Bos
taurus]
gi|296490543|tpg|DAA32656.1| TPA: heterogeneous nuclear ribonucleoprotein A1-like [Bos taurus]
Length = 320
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL ++T ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 15 KLFIGGLRFETIDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYTTVEEVDAAMNA 74
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
KV+ R + A ++ A +KI+V + D E+ LR +FE++G+
Sbjct: 75 RPHKVDGRAVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE I D +GK RGFA + + K + + GH Q +KA
Sbjct: 131 IEVIEIMTDQGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCQVRKA 180
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ +KIFV G+ DT + L F G+IE +++ D+ +GK +GFAF+ F + K
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTFDDHDSVDK 161
Query: 164 ALKNPQRKVNNRMASCQL 181
+ VN +CQ+
Sbjct: 162 IVIQKYHTVNGH--NCQV 177
>gi|297804878|ref|XP_002870323.1| hypothetical protein ARALYDRAFT_493480 [Arabidopsis lyrata subsp.
lyrata]
gi|297316159|gb|EFH46582.1| hypothetical protein ARALYDRAFT_493480 [Arabidopsis lyrata subsp.
lyrata]
Length = 407
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 25/192 (13%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF------- 155
D Q K+FV G+ W+T ++ L F GE+ + ++ DK+TG+ +GF F++F
Sbjct: 2 DSDQGKLFVGGVSWETDEDKLREHFSNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 156 ---------KTRKAAVK-ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIY 205
TR+ VK A+ +++V+ R + + G + +KI+
Sbjct: 62 RVLQDKHNIDTREVDVKRAMSREEQQVSGRTGNLNTSR--------SSGGDSFNKTKKIF 113
Query: 206 VSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQK 265
V +P + E+ R +FE +G + I +D T + RGF + + + + L +
Sbjct: 114 VGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDRVLHKTFH 173
Query: 266 MFEGHQLQCQKA 277
G Q++ ++A
Sbjct: 174 DLSGKQVEVKRA 185
>gi|403287876|ref|XP_003935149.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Saimiri boliviensis boliviensis]
Length = 356
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL S F G + C ++ T ++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTHKSLRSHFEQWGTLTGCVVMRHPNTKHSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KVN R+ + A ++ A +KI+V ++ D E+ LR +FE++G
Sbjct: 74 ARPHKVNGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGDIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D ++GK +GFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRSSGKKKGFAFVTFDDHDSVDKIIIKKYHTVNGHNCEVRKA 180
>gi|297743097|emb|CBI35964.3| unnamed protein product [Vitis vinifera]
Length = 353
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 10/182 (5%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
R+ K+FV G+ W+T++E + F GEI + +++D+ TG+ +GF FI F A
Sbjct: 46 RNSYSGKLFVGGISWETSEEIFTNYFSNYGEITDSVIMMDRHTGRPRGFGFITFADPAVA 105
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGP--GVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
K L+ + + + V T P G++ +G + RKI+V +P + +++L+
Sbjct: 106 DKVLE------EDHVIDGRAVEVKKTVPREGMEVRGVSKT--RKIFVGGIPSSLTEDELK 157
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279
+F +G I I D TG+SRGF + + + + E + G +L K AE
Sbjct: 158 DYFSSYGAIVENQIMLDHVTGRSRGFGFVTFVSEDAVERLFSEGKTHELGGKLVEIKKAE 217
Query: 280 GK 281
K
Sbjct: 218 PK 219
>gi|121715226|ref|XP_001275222.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus clavatus
NRRL 1]
gi|119403379|gb|EAW13796.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus clavatus
NRRL 1]
Length = 466
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W+TT +SL F GE++EC ++ D TG+++GF F+ FK K V +
Sbjct: 1 MFIGGLNWETTDQSLKDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPK-TVNTVMVK 59
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ ++ ++ + A P +++ + KI+V V ++ +++ +GFF +FG +
Sbjct: 60 EHYLDGKIIDPKRAI-----PRDEQEKTS-----KIFVGGVSQEATEQEFKGFFMQFGRV 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263
+ D TG+ RGF + + AL P
Sbjct: 110 VDATLMIDKDTGRPRGFGFVTFDSEAAVENALSRP 144
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA 160
D KIFV G+ + T++ F G + + L+IDK TG+ +GF F+ F + A
Sbjct: 77 DEQEKTSKIFVGGVSQEATEQEFKGFFMQFGRVVDATLMIDKDTGRPRGFGFVTFDSEAA 136
Query: 161 AVKALKNP 168
AL P
Sbjct: 137 VENALSRP 144
>gi|305855162|ref|NP_001182263.1| ELAV-like protein 1 [Sus scrofa]
gi|285818484|gb|ADC38915.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 [Sus
scrofa]
gi|456753432|gb|JAA74168.1| ELAV-like 1 (Hu antigen R) [Sus scrofa]
Length = 326
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQE L S F GEIE KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F FG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAI 302
>gi|440908270|gb|ELR58311.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Bos grunniens
mutus]
Length = 315
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL ++TT ESL S F G + +C ++ D T +++GF + + T + A+
Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGLVTYATVEEVDAAMNA 73
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
KV+ R + A ++ A +KI+V + D E+ LR +FE++G+
Sbjct: 74 RPHKVDGRAVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 129
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 179
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ +KIFV G+ DT + L F G+IE +++ D+ +GK +GFAF+ F + K
Sbjct: 101 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 160
Query: 164 ALKNPQRKVNNRMASCQL 181
+ VN +C++
Sbjct: 161 IVIQKYHTVNGH--NCEV 176
>gi|297744195|emb|CBI37165.3| unnamed protein product [Vitis vinifera]
Length = 234
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV G+ WDTT+E L F G++ + ++ DK TG+ +GF F+VF + +
Sbjct: 2 DSDEGKLFVGGIPWDTTEEKLKEYFNQYGDVTQTVIMRDKTTGRPRGFGFVVFAD-PSVL 60
Query: 163 KALKNPQRKVNNRMASCQLA----SVGPTGPGVKEQGAAAQG------ERKIYVSNVPRD 212
A+ + ++ R + A + PG G ++ G +KI+V +P
Sbjct: 61 DAVLQEKHTIDGRTVEAKRALSREEQHTSRPGNSNTGRSSSGMGGNFKTKKIFVGGLPST 120
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
+ +E R +FE +G + + +D T + RGF + T + + L + G +
Sbjct: 121 LTEEGFRQYFETYGHVTDVVVMYDQNTQRPRGFGFISFDTEDAVDRVLHKTFHDLNGKLV 180
Query: 273 QCQKA 277
+ ++A
Sbjct: 181 EVKRA 185
>gi|58331869|ref|NP_001011094.1| heterogeneous nuclear ribonucleoprotein A1 [Xenopus (Silurana)
tropicalis]
gi|54038494|gb|AAH84487.1| heterogeneous nuclear ribonucleoprotein A1 [Xenopus (Silurana)
tropicalis]
Length = 343
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL F G + +C ++ D + +++GF F+ + + A+
Sbjct: 11 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSTDEVDAAMS 70
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + ++ G +KI+V + D E+ LR +F
Sbjct: 71 ARPHKVDGRVVEPKRA--------VSREDSSRPGAHLTVKKIFVGGIKEDTEEHHLREYF 122
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA ++ + K + + H + +KA
Sbjct: 123 EQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNCEVRKA 177
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 9/186 (4%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
R Q +F+ L ++L F G I CK+ D+ G +KG+ F+ ++T +AA
Sbjct: 144 RKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAA 202
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKL 218
+A+K+ VN + + + VG P Q + + IYV N+ +V ++
Sbjct: 203 SQAIKH----VNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEF 258
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-PQKMFEGHQLQCQKA 277
R FE++G++ + + D TGKSRGF + + E A KA++E +K F G L +A
Sbjct: 259 RTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRA 318
Query: 278 AEGKNR 283
+ R
Sbjct: 319 QKKHER 324
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 17/144 (11%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I+V + + T + + F G++ L D+ TGK++GF F+ F + + A KA++
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQ-- 301
Query: 169 QRKVNNRMASCQLASVGPTGPG------VKEQGAAAQGER-------KIYVSNVPRDVEK 215
++N + Q VG +++ AA+ E+ +Y+ N+ +V+
Sbjct: 302 --ELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 216 EKLRGFFERFGEIETGPIGFDITT 239
EKLR F FG I + + D T
Sbjct: 360 EKLRQLFSEFGPITSAKVMRDSIT 383
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V L T+ L F G + ++ D VT ++ G+A++ + T KAL+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE-- 120
Query: 169 QRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
++N + + + P +++ G QG +++ N+ ++ + L F FG
Sbjct: 121 --ELNYTLIKGRPCRIMWSQRDPALRKTG---QG--NVFIKNLDVAIDNKALHDTFAAFG 173
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-------PQKMFEGHQL 272
I + + D G S+G+ Y+T E A +A++ +K++ GH +
Sbjct: 174 NILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
>gi|148237229|ref|NP_001080689.1| heterogeneous nuclear ribonucleoprotein A1 [Xenopus laevis]
gi|28374304|gb|AAH45260.1| Hnrpa1 protein [Xenopus laevis]
Length = 399
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL F G + +C ++ D + +++GF F+ + + A+
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGALTDCVVMRDPNSKRSRGFGFVTYSSTDEVDAAMT 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + ++ G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSSRPGAHLTVKKIFVGGIKEDTEEHHLREYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA ++ + K + + H + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNCEVRKA 180
>gi|432899440|ref|XP_004076559.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 2
[Oryzias latipes]
Length = 347
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ V + ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 QKHSVLIKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 136 VDDAMLMFDKTTNRHRGFGFITFESEDIVEKVCEIHFHEINNKMVECKKA 185
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++++ L+ DK T + +GF FI F++ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFESEDIVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|22330665|ref|NP_565132.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332197724|gb|AEE35845.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 285
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%)
Query: 95 HILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
H L + D + K+FV GL W+T E+L F GEI E ++ DK TG++KG+ F+
Sbjct: 12 HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
F+ +AA +A +P ++ R A+C LAS+G
Sbjct: 72 FRDPEAARRACADPTPIIDGRRANCNLASLG 102
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + + E LR FE++GEI + D TG+S+G+ ++ E AR+A +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + +G + C A+ G+ R
Sbjct: 85 PTPIIDGRRANCNLASLGRPR 105
>gi|161084519|ref|NP_001097631.1| RNA-binding protein 6, isoform B [Drosophila melanogaster]
gi|158028569|gb|ABW08559.1| RNA-binding protein 6, isoform B [Drosophila melanogaster]
Length = 499
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ ESL FG G+I E ++ D T +++GF F+ F + K L
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A P + + +KI+V + E ++ +FE+FG
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKMVTR------TKKIFVGGLSAPTTLEDVKSYFEQFGP 143
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD T + RGF +++ + K E ++C+KA
Sbjct: 144 IEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKA 193
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT E + S F G IE+ L+ DK T + +GF F+ F++ K +
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 178 IHFHEINNKMVECKKA 193
>gi|410077429|ref|XP_003956296.1| hypothetical protein KAFR_0C01680 [Kazachstania africana CBS 2517]
gi|372462880|emb|CCF57161.1| hypothetical protein KAFR_0C01680 [Kazachstania africana CBS 2517]
Length = 479
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 11/170 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT+E+L F G + + K++ D TG+++GF F+ F+ + + +K
Sbjct: 95 KMFIGGLNWETTEETLRDYFNKYGHVTDLKIMKDSNTGRSRGFGFLTFEHPSSVDEVVKT 154
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
Q ++ ++ + + +EQ KI+V + DV ++ FF ++G
Sbjct: 155 -QHILDGKVIDPKRSIP------REEQDKTG----KIFVGGIGADVRPKEFEEFFSQYGN 203
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
I + D TG+SRGF Y + + + + F+G Q++ ++A
Sbjct: 204 IIDAQLMLDKDTGRSRGFGFVTYDSPDAVDRVCQSKYIEFKGKQIEIKRA 253
>gi|259483749|tpe|CBF79395.1| TPA: heterogeneous nuclear ribonucleoprotein HRP1 (AFU_orthologue;
AFUA_2G06090) [Aspergillus nidulans FGSC A4]
Length = 559
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT +SL F GE++EC ++ D TG+++GF F+ FK K V +
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPK-TVNTVMV 169
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ ++ ++ + A P +++ + KI+V V ++ ++ + FF +FG
Sbjct: 170 KEHYLDGKIIDPKRAI-----PRDEQEKTS-----KIFVGGVSQEATEQDFKQFFMQFGR 219
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ + D TG+ RGF + + AL P ++ G ++ +KA
Sbjct: 220 VIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRPLEIL-GKTIEVKKA 268
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 102 RDVSQR--KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
RD ++ KIFV G+ + T++ F G + + L+IDK TG+ +GF F+ F +
Sbjct: 187 RDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEA 246
Query: 160 AAVKALKNP 168
A AL P
Sbjct: 247 AVEAALSRP 255
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 186 PTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGF 245
P G G+KE G K+++ + + + L+ +F +FGE++ + D TG+SRGF
Sbjct: 101 PQGTGIKEDG-------KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGF 153
Query: 246 AIFVYK 251
+K
Sbjct: 154 GFLTFK 159
>gi|119597384|gb|EAW76978.1| hCG2023776 [Homo sapiens]
Length = 317
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T ++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGTLMDCVVMRDPNTKCSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D ++ LR +FE++G
Sbjct: 74 ARPHKVDGRVVESKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTKEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHICEVRKA 180
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
+ A R Q +F+ L ++L F G I CK+ D+ TG +KG+ F+ ++T
Sbjct: 141 DPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDE-TGASKGYGFVHYET 199
Query: 158 RKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVE 214
+AA +A+K+ VN + + + VG P Q + + IYV N+P +
Sbjct: 200 DEAASQAIKH----VNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEAT 255
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273
E+ R FE+FG++ + + D + KSRGF + E A KA++E K F+G L
Sbjct: 256 DEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELNGKDFKGQDLY 315
Query: 274 CQKAAEGKNR 283
+A + R
Sbjct: 316 VGRAQKKHER 325
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V L T+ L F G + ++ D VT ++ G+A++ + T KAL+
Sbjct: 64 LYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALE-- 121
Query: 169 QRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
++N + + + P +++ G QG +++ N+ ++ + L F FG
Sbjct: 122 --ELNYTLIKGRPCRIMWSQRDPALRKTG---QG--NVFIKNLDTAIDNKALHDTFAAFG 174
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-------PQKMFEGHQL 272
I + + D TG S+G+ Y+T E A +A++ +K+F GH +
Sbjct: 175 NILSCKVAQD-ETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHI 226
>gi|194741664|ref|XP_001953309.1| GF17697 [Drosophila ananassae]
gi|190626368|gb|EDV41892.1| GF17697 [Drosophila ananassae]
Length = 634
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 201 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVQ 260
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 261 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 313
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 314 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 368
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ +K L+
Sbjct: 206 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVQKVLKV 265
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 266 PIHTLDGKKID-PKHATPKNR 285
>gi|390474591|ref|XP_002757923.2| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 3 [Callithrix jacchus]
Length = 339
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAVN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
V+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHNVDGRVVEPKRAVSRED----SQRPDAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK R FA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRDFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA 160
D ++ +KIFV G+ DT + L F G+IE +++ D+ +GK + FAF+ F +
Sbjct: 99 DAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRDFAFVTFDDHDS 158
Query: 161 AVKALKNPQRKVNNRMASCQL 181
K + VN +C++
Sbjct: 159 VDKIVIQKYHTVNGH--NCEV 177
>gi|269914213|gb|ACZ52626.1| MIP15164p [Drosophila melanogaster]
Length = 578
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 143 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 202
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 203 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 255
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 256 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 310
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 148 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 207
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 208 PIHTLDGKKID-PKHATPKNR 227
>gi|195504299|ref|XP_002099019.1| GE23609 [Drosophila yakuba]
gi|194185120|gb|EDW98731.1| GE23609 [Drosophila yakuba]
Length = 637
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 202 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 261
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 262 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 314
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 315 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 369
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 207 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 266
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 267 PIHTLDGKKID-PKHATPKNR 286
>gi|442621136|ref|NP_001262961.1| musashi, isoform H [Drosophila melanogaster]
gi|440217894|gb|AGB96341.1| musashi, isoform H [Drosophila melanogaster]
Length = 567
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 132 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 191
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 192 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 244
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 245 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 299
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 137 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 196
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 197 PIHTLDGKKID-PKHATPKNR 216
>gi|194388148|dbj|BAG65458.1| unnamed protein product [Homo sapiens]
Length = 323
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F + + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFATYSCVEEVDAAMC 72
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 123
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 124 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>gi|332264173|ref|XP_003281121.1| PREDICTED: ELAV-like protein 1 [Nomascus leucogenys]
Length = 326
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ + D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMADDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>gi|332028567|gb|EGI68604.1| RNA-binding protein squid [Acromyrmex echinatior]
Length = 316
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 15/173 (8%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
RK+FV GL W+TT + L F G+IE + D TG+++GFAFIVF ++ K +
Sbjct: 43 DRKLFVGGLSWETTDKELREHFSAYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDKIM 102
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+NN+ V P ++ A G KI+V + ++ + ++ FF +F
Sbjct: 103 SAGDHVINNK-------KVDP------KKAKARHG--KIFVGGLSTELSDDDIKNFFSQF 147
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
G I + FD T + +GF +++ + + L+ ++ G ++ +KA
Sbjct: 148 GTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTSKQTINGKEVDVKKAT 200
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + KI DH++ D KIFV GL + + + + + F G I E +
Sbjct: 95 AESLDKIMSAGDHVINNKKVDPKKAKARHGKIFVGGLSTELSDDDIKNFFSQFGTIVEVE 154
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTG 188
+ DK + KGF FI F++ + + LK ++ +N + + A+ P G
Sbjct: 155 MPFDKTKNQRKGFCFITFESEQVVNELLKTSKQTINGKEVDVKKATPKPDG 205
>gi|350421557|ref|XP_003492883.1| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like, partial
[Bombus impatiens]
Length = 241
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 7/170 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W T+ E L FG G + + ++ D VT +++GF FI F + K LK
Sbjct: 62 KLFVGGLSWQTSSEKLREYFGMFGTVTDVLIMKDPVTQRSRGFGFITFAEPGSVDKVLKC 121
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P ++ + + P K + A +KI+V V +D ++++ +F +FG+
Sbjct: 122 PIHTLDGK-------KIDPKHATPKNRAKQANRTKKIFVGGVSQDTSSDEVKAYFNQFGK 174
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + D T + RGF ++ + + E + +++C+KA
Sbjct: 175 VEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 224
>gi|256081432|ref|XP_002576974.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645373|emb|CCD59902.1| heterogeneous nuclear ribonucleoprotein,putative [Schistosoma
mansoni]
Length = 392
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 91/192 (47%), Gaps = 24/192 (12%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQ------------ESLLSAFGGSGEIEECKLVIDKVTGK 146
T + D RK+FV GL W+T + + L F G++ +C + +D+ TG
Sbjct: 43 TDENDDDSRKLFVGGLSWETNESKVSCLLFTISSDDLKEYFSRWGKVTQCIIKLDRFTGN 102
Query: 147 AKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYV 206
++GF F+ ++ K L P+ + N+ + P K+ + + +KI+V
Sbjct: 103 SRGFGFVTLESEDCVSKVLSVPEHWLKNK-------KIDP-----KKAKPSREPLKKIFV 150
Query: 207 SNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKM 266
+ +V ++++R +F FG++E+ + +D GK + + + T A+KA+ + ++
Sbjct: 151 GGIDPEVTEDQIREYFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAAKKAISKERQD 210
Query: 267 FEGHQLQCQKAA 278
G Q + A
Sbjct: 211 IFGRQCDVRVAV 222
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 58 ESEPESESISSLLEPYSKDQLIDLIAAAATKIPLLHDHILETADRDVSQRKIFVHGLGWD 117
ESE + S+ E + K++ ID A ++ PL +KIFV G+ +
Sbjct: 112 ESEDCVSKVLSVPEHWLKNKKIDPKKAKPSREPL---------------KKIFVGGIDPE 156
Query: 118 TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177
T++ + F G++E L D GK K + F+ F T AA KA+ ++ + R
Sbjct: 157 VTEDQIREYFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAAKKAISKERQDIFGRQC 216
Query: 178 SCQLA 182
++A
Sbjct: 217 DVRVA 221
>gi|156837267|ref|XP_001642663.1| hypothetical protein Kpol_1076p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156113219|gb|EDO14805.1| hypothetical protein Kpol_1076p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 526
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 11/170 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT+E+L F G++ E K++ D TG+++GF F+ F+ + + +K
Sbjct: 157 KMFIGGLNWETTEETLRDYFNKYGKVVELKIMKDNNTGRSRGFGFLTFEDATSVDEVVKT 216
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
Q ++ ++ + A + + G KI+V + DV ++ FF ++G
Sbjct: 217 -QHILDGKVIDPKRA--------IPREEQDKTG--KIFVGGIGADVRPKEFEDFFAQYGT 265
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
I + D TG+SRGF Y + + + + F+G Q++ ++A
Sbjct: 266 IIDAQLMLDKDTGRSRGFGFVTYDSPDAVDRVCQNKFIEFKGKQIEIKRA 315
>gi|347963746|ref|XP_003436985.1| AGAP000399-PB [Anopheles gambiae str. PEST]
gi|333467054|gb|EGK96461.1| AGAP000399-PB [Anopheles gambiae str. PEST]
Length = 371
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+T+ + L F G+IE + D TG+++GFAFIV+K+ +
Sbjct: 99 RD-DDRKLFVGGLSWETSDKELKEHFSQYGDIESINVKTDPNTGRSRGFAFIVYKSADSI 157
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + + +NN+ + A A G KI+V + ++ E+++ F
Sbjct: 158 DKVVAVSEHVINNKKVDPKKA-------------KARYG--KIFVGGLTSEISDEEIKTF 202
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + + L+ P++ G ++ +KA
Sbjct: 203 FGQFGNIVEVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKAT 259
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ + +H++ D + K IFV GL + + E + + FG G I E +
Sbjct: 154 ADSIDKVVAVSEHVINNKKVDPKKAKARYGKIFVGGLTSEISDEEIKTFFGQFGNIVEVE 213
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F + + + LK P++ ++ + + A+ P
Sbjct: 214 MPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPKP 262
>gi|410036043|ref|XP_003949991.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Pan troglodytes]
Length = 320
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 12/184 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T + GF F+ + T K A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQRGTLTDCVVMRDPNTKCSTGFGFVTYATVKEVEAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +K +V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKTFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
E++G+ E I D +GK RGFA + + K + + GH + +KA +
Sbjct: 126 EQYGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKALSKQE 185
Query: 283 RTSS 286
TS+
Sbjct: 186 MTSA 189
>gi|222623547|gb|EEE57679.1| hypothetical protein OsJ_08130 [Oryza sativa Japonica Group]
Length = 258
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 18/243 (7%)
Query: 95 HILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
H+L + D + K+FV GL W+TT E L + GEI E ++ D+ +G++KG+ F+
Sbjct: 25 HLLASPFGDTTYTKVFVGGLAWETTSERLRRFYDRFGEILEAVVITDRHSGRSKGYGFVT 84
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVE 214
F+ ++A KA ++P ++ R A+C LAS+G P V + G + VPR V
Sbjct: 85 FRDPESARKACEDPTPVIDGRRANCNLASLGRAQPAVPLGRPRSAGS--YFGVPVPRGV- 141
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL-- 272
+ +G+ T P+G+ +GF + Y + + PQ + +
Sbjct: 142 ------YVGGYGQHRTLPLGY------YQGFPVPQYSYTTYGTEYI-YPQVPLDCSRTKE 188
Query: 273 QCQKAAEGKNRTSSNSSSSNNQAQMMIQKQQQPMLQGQQQGQGNEQEQVLAAMAAAQNLA 332
QC + +SN + A +M+ + G +++++L ++ L
Sbjct: 189 QCCCICSTGSYLASNPPCIHKVALIMVIRCTWNHDVAPMDGTMIQEQRLLLSVLLGYILC 248
Query: 333 LFG 335
L G
Sbjct: 249 LNG 251
>gi|296473573|tpg|DAA15688.1| TPA: heterogeneous nuclear ribonucleoprotein A1-like [Bos taurus]
Length = 320
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C L+ D T ++GF + + T + A+
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGTLTDCVLMRDPNTKHSRGFGLVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A G ++ A +KI+V + D E+ R +FE++
Sbjct: 74 ARPHKVDGRVVEPKRAVSGED----SQRPGAHLTVKKIFVGGIKEDTEEHHXRDYFEQYR 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|198453793|ref|XP_002137742.1| GA27393 [Drosophila pseudoobscura pseudoobscura]
gi|198132515|gb|EDY68300.1| GA27393 [Drosophila pseudoobscura pseudoobscura]
Length = 643
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 206 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQDPCTVE 265
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 266 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 318
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 319 AQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 373
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 211 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQDPCTVEKVLKV 270
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 271 PIHTLDGKKID-PKHATPKNR 290
>gi|432899442|ref|XP_004076560.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 3
[Oryzias latipes]
Length = 328
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ V + ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 QKHSVLIKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 136 VDDAMLMFDKTTNRHRGFGFITFESEDIVEKVCEIHFHEINNKMVECKKA 185
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++++ L+ DK T + +GF FI F++ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFESEDIVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|24646609|ref|NP_731826.1| squid, isoform A [Drosophila melanogaster]
gi|11038|emb|CAA44503.1| hrp40.1 [Drosophila melanogaster]
gi|21428420|gb|AAM49870.1| LD09691p [Drosophila melanogaster]
gi|23171185|gb|AAF54964.2| squid, isoform A [Drosophila melanogaster]
gi|220943526|gb|ACL84306.1| sqd-PA [synthetic construct]
gi|220953540|gb|ACL89313.1| sqd-PA [synthetic construct]
Length = 321
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFIVF +A
Sbjct: 52 RD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI 110
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +N++ V P ++ A G KI+V + ++ E+++ +
Sbjct: 111 DKVSAADEHIINSK-------KVDP------KKAKARHG--KIFVGGLTTEISDEEIKTY 155
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + L+ P++ G ++ ++A
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRAT 212
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 85 AATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLV 139
A K+ +HI+ + D KIFV GL + + E + + FG G I E ++
Sbjct: 109 AIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMP 168
Query: 140 IDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
DK + KGF FI F + + LK P++K+ + + A+ P
Sbjct: 169 FDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 183 SVGPTGPGVKEQGAAA---QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239
+ G T Q AA+ +RK++V + + +++LR F ++GEIE+ + D T
Sbjct: 34 AAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQT 93
Query: 240 GKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G+SRGFA V+ E K + + ++ +KA
Sbjct: 94 GRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA 131
>gi|359488807|ref|XP_002272790.2| PREDICTED: nuclear pore membrane glycoprotein 210-like [Vitis
vinifera]
Length = 2363
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 8/177 (4%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
R+ +RKIF+ GL +TT + FG GEI + ++ D+ TG+ +GF F+ +
Sbjct: 2023 REGRRRKIFIGGLARETTSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADLSVV 2082
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
+ +++ +N + ++ P G GA +KI+V +P V +E+ + F
Sbjct: 2083 DQVIQD-THVINGKQV--EIKRTIPKG----AIGAKDFKTKKIFVGGIPATVTEEEFKDF 2135
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKM-FEGHQLQCQKA 277
F ++GE++ I D +T +SRGF + T + L + K+ G Q++ +KA
Sbjct: 2136 FTQYGEVKDHQIMRDHSTSRSRGFGFVTFDTEQAVDDLLSQGNKLELAGAQVEIKKA 2192
>gi|156548706|ref|XP_001603011.1| PREDICTED: RNA-binding protein squid-like [Nasonia vitripennis]
Length = 310
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 13/173 (7%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
+RK+FV GL +TT+ L + FG GEIE + +D TG ++GFAF+VF+ KA K
Sbjct: 71 DERKLFVGGLTRNTTEAELKAYFGKFGEIESVSIKMDPYTGVSRGFAFMVFQNPKAIDKL 130
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
L + VN R + S A G KI+V + D+ E ++ +F +
Sbjct: 131 LASGDHYVNKRKVDPKRVSK-----------KAQHG--KIFVGGLTPDITDEDIKTYFGQ 177
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+G I FD T + R + + + + K L+ P+++ G ++ +K
Sbjct: 178 YGTIVEVQAPFDKTKNQRRSYCFVTFDSKDVVYKLLKTPKQVINGKEIDVKKV 230
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
+ A R Q IF+ L ++L F G I CK+ D+ G +KG+ F+ ++T
Sbjct: 138 DPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-HGNSKGYGFVHYET 196
Query: 158 RKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQ---GERKIYVSNVPRDVE 214
+AA +A+K+ VN + + + VG P Q + IY+ N+ DV
Sbjct: 197 DEAAQQAIKH----VNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHADVT 252
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-PQKMFEGHQLQ 273
++ R FE++G + + I D TGKSRGF + T E A KA+EE + G +L
Sbjct: 253 DDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELNSREIHGQELY 312
Query: 274 CQKAAEGKNR 283
+A + R
Sbjct: 313 VGRAQKKHER 322
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I++ L D T + F G + + D+ TGK++GF FI F T ++A KA++
Sbjct: 242 IYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVE-- 299
Query: 169 QRKVNNRMASCQLASVGPTGPG------VKEQGAAAQGER-------KIYVSNVPRDVEK 215
++N+R Q VG +++ AA+ E+ +Y+ N+ +V+
Sbjct: 300 --ELNSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVDD 357
Query: 216 EKLRGFFERFGEIETGPI 233
EKLR F +G I + +
Sbjct: 358 EKLRELFAPYGPITSAKV 375
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 30/204 (14%)
Query: 90 PLLHDHILETADRDVS-------------QRKIFVHGLGWDTTQESLLSAFGGSGEIEEC 136
P ++ ++ AD D + ++V L T+ L F G +
Sbjct: 29 PAINTNVTAEADNDTAGPTPSSAAAHPQASASLYVGELDESVTEAMLFELFSQIGPVASI 88
Query: 137 KLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASVGPTGPGVKEQG 195
++ D VT ++ G+A++ + + KAL+ + NR C++ P +++ G
Sbjct: 89 RVCRDAVTRRSLGYAYVNYNSTADGEKALEELNYTLIKNR--PCRIM-WSQRDPALRKTG 145
Query: 196 AAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEG 255
QG I++ N+ ++ + L F FG I + + D G S+G+ Y+T E
Sbjct: 146 ---QG--NIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEA 199
Query: 256 ARKALEE-------PQKMFEGHQL 272
A++A++ +K++ GH +
Sbjct: 200 AQQAIKHVNGMLLNEKKVYVGHHI 223
>gi|390474589|ref|XP_002757922.2| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 2 [Callithrix jacchus]
Length = 320
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAVN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
V+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHNVDGRVVEPKRAVSRED----SQRPDAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK R FA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRDFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA 160
D ++ +KIFV G+ DT + L F G+IE +++ D+ +GK + FAF+ F +
Sbjct: 99 DAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRDFAFVTFDDHDS 158
Query: 161 AVKALKNPQRKVNNRMASCQL 181
K + VN +C++
Sbjct: 159 VDKIVIQKYHTVNGH--NCEV 177
>gi|402894543|ref|XP_003910414.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Papio anubis]
gi|402894545|ref|XP_003910415.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 2 [Papio anubis]
Length = 320
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ G+ ++TT ESL S F + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIRGMSFETTDESLRSHFEQWRTLTDCVVMRDPNTKRSRGFGFVTYTTVEEVDAAIN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +K +V ++ D+E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHFTVKKTFVGSIKEDMEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 DQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKA 180
>gi|291393062|ref|XP_002713027.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Oryctolagus cuniculus]
Length = 269
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 4/183 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++ F F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLMDCVVMRDPNTKRSRDFGFVTYATVEEVDVAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS----QRPGAHLTVKKIFVGGIKEDTEERHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSS 286
+IE I D +GK +GFA + + K + + GH + +KA + S+
Sbjct: 130 KIEVIQIMTDRGSGKKKGFASVTFDDHDSMDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 287 NSS 289
+S+
Sbjct: 190 SST 192
>gi|194908488|ref|XP_001981778.1| GG11413 [Drosophila erecta]
gi|190656416|gb|EDV53648.1| GG11413 [Drosophila erecta]
Length = 635
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ + L F G + + ++ D VT +++GF FI F+
Sbjct: 200 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 259
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D E+++ +F
Sbjct: 260 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 312
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 313 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 367
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + +KL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 205 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 264
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 265 PIHTLDGKKID-PKHATPKNR 284
>gi|24646605|ref|NP_652209.1| squid, isoform C [Drosophila melanogaster]
gi|386765705|ref|NP_001247088.1| squid, isoform E [Drosophila melanogaster]
gi|23171183|gb|AAN13570.1| squid, isoform C [Drosophila melanogaster]
gi|73853364|gb|AAZ86753.1| LD29474p [Drosophila melanogaster]
gi|220951946|gb|ACL88516.1| sqd-PC [synthetic construct]
gi|383292688|gb|AFH06406.1| squid, isoform E [Drosophila melanogaster]
Length = 308
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFIVF +A
Sbjct: 52 RD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI 110
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +N++ + A A G KI+V + ++ E+++ +
Sbjct: 111 DKVSAADEHIINSKKVDPKKAK-------------ARHG--KIFVGGLTTEISDEEIKTY 155
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + L+ P++ G ++ ++A
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRAT 212
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 85 AATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLV 139
A K+ +HI+ + D KIFV GL + + E + + FG G I E ++
Sbjct: 109 AIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMP 168
Query: 140 IDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
DK + KGF FI F + + LK P++K+ + + A+ P
Sbjct: 169 FDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 183 SVGPTGPGVKEQGAAA---QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239
+ G T Q AA+ +RK++V + + +++LR F ++GEIE+ + D T
Sbjct: 34 AAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQT 93
Query: 240 GKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G+SRGFA V+ E K + + ++ +KA
Sbjct: 94 GRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA 131
>gi|390355509|ref|XP_800694.3| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein D-like [Strongylocentrotus purpuratus]
Length = 374
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
+K+FV GL WDTTQE L + F G + +C + D+VT K +GF F++F++ + K
Sbjct: 48 DDKKLFVGGLAWDTTQEKLQAYFSDFGVVVDCDIKRDQVTRKPRGFGFVLFESADSVTKV 107
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
L P+ KV+N+ + P P K + I++ + D++ E++ +F +
Sbjct: 108 LGVPEHKVDNKTIDPK-----PANPLKKPEKKKK-----IFIGGIGSDLKDEQITEYFSK 157
Query: 225 FGEIETGPIGFDITTGKSRGFAI 247
FG + D TG+ GFAI
Sbjct: 158 FGTVVETEFPEDKNTGRRLGFAI 180
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
+ ++K++V + D +EKL+ +F FG + I D T K RGF ++++ + K
Sbjct: 47 EDDKKLFVGGLAWDTTQEKLQAYFSDFGVVVDCDIKRDQVTRKPRGFGFVLFESADSVTK 106
Query: 259 ALEEPQ 264
L P+
Sbjct: 107 VLGVPE 112
>gi|11040|emb|CAA44504.1| hrp40.2 [Drosophila melanogaster]
Length = 345
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFIVF +A
Sbjct: 52 RD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI 110
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +N++ V P ++ A G KI+V + ++ E+++ +
Sbjct: 111 DKVSAADEHIINSK-------KVDP------KKAKARHG--KIFVGGLTTEISDEEIKTY 155
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + L+ P++ G ++ ++A
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRAT 212
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 85 AATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLV 139
A K+ +HI+ + D KIFV GL + + E + + FG G I E ++
Sbjct: 109 AIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMP 168
Query: 140 IDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
DK + KGF FI F + + LK P++K+ + + A+ P
Sbjct: 169 FDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 183 SVGPTGPGVKEQGAAA---QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239
+ G T Q AA+ +RK++V + + +++LR F ++GEIE+ + D T
Sbjct: 34 AAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQT 93
Query: 240 GKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G+SRGFA V+ E K + + ++ +KA
Sbjct: 94 GRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA 131
>gi|24646607|ref|NP_731825.1| squid, isoform B [Drosophila melanogaster]
gi|55584092|sp|Q08473.3|SQD_DROME RecName: Full=RNA-binding protein squid; AltName:
Full=Heterogeneous nuclear ribonucleoprotein 40;
Short=HNRNP 40
gi|23171184|gb|AAF54963.2| squid, isoform B [Drosophila melanogaster]
Length = 344
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFIVF +A
Sbjct: 52 RD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI 110
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +N++ V P ++ A G KI+V + ++ E+++ +
Sbjct: 111 DKVSAADEHIINSK-------KVDP------KKAKARHG--KIFVGGLTTEISDEEIKTY 155
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + L+ P++ G ++ ++A
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRAT 212
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 85 AATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLV 139
A K+ +HI+ + D KIFV GL + + E + + FG G I E ++
Sbjct: 109 AIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMP 168
Query: 140 IDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
DK + KGF FI F + + LK P++K+ + + A+ P
Sbjct: 169 FDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 183 SVGPTGPGVKEQGAAA---QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239
+ G T Q AA+ +RK++V + + +++LR F ++GEIE+ + D T
Sbjct: 34 AAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQT 93
Query: 240 GKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G+SRGFA V+ E K + + ++ +KA
Sbjct: 94 GRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA 131
>gi|194901408|ref|XP_001980244.1| GG17035 [Drosophila erecta]
gi|190651947|gb|EDV49202.1| GG17035 [Drosophila erecta]
Length = 345
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFIVF +A
Sbjct: 52 RD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI 110
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +N++ + A A G KI+V + ++ E+++ +
Sbjct: 111 DKVSAADEHIINSKKVDPKKAK-------------ARHG--KIFVGGLTTEISDEEIKTY 155
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + L+ P++ G ++ ++A
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRAT 212
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
++ + ID ++AA +HI+ + D KIFV GL + + E + + F
Sbjct: 104 FTNTEAIDKVSAA-------DEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYF 156
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G G I E ++ DK + KGF FI F + + LK P++K+ + + A+ P
Sbjct: 157 GQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 188 GPGVKEQGAAAQ--GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGF 245
G + GA+ Q +RK++V + + +++LR F ++GEIE+ + D TG+SRGF
Sbjct: 40 GSSDNQSGASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGF 99
Query: 246 AIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
A V+ E K + + ++ +KA
Sbjct: 100 AFIVFTNTEAIDKVSAADEHIINSKKVDPKKA 131
>gi|18394923|ref|NP_564127.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|334182725|ref|NP_001185049.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332191914|gb|AEE30035.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332191915|gb|AEE30036.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 274
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%)
Query: 85 AATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVT 144
A IP H L + D + K+FV GL W+T E+L F G+I E ++ DK T
Sbjct: 2 AYHSIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNT 61
Query: 145 GKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
G++KG+ F+ F+ +AA +A +P ++ R A+C LAS+G
Sbjct: 62 GRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLG 102
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + + E LR F+++G+I + D TG+S+G+ ++ E AR+A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + +G + C A+ G++R
Sbjct: 85 PTPIIDGRRANCNLASLGRSR 105
>gi|297845256|ref|XP_002890509.1| hypothetical protein ARALYDRAFT_313119 [Arabidopsis lyrata subsp.
lyrata]
gi|297336351|gb|EFH66768.1| hypothetical protein ARALYDRAFT_313119 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T + + F GEI E ++ DK TGK+KG+ F+ F+ +A
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKTTGKSKGYGFVTFRESDSAT 72
Query: 163 KALKNPQRKVNNRMASCQLASVG---PTGPGVKEQGAA 197
+A+ +P ++ R A+C +AS G P+ P + QG +
Sbjct: 73 RAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGS 110
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + +++R +F++FGEI I D TTGKS+G+ ++ + A +A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKTTGKSKGYGFVTFRESDSATRAVAD 77
Query: 263 PQKMFEGHQLQCQKAAEGKNRTSS 286
P + +G + C A+ G+ R S+
Sbjct: 78 PNPVIDGRKANCNIASFGRPRPST 101
>gi|378734179|gb|EHY60638.1| hypothetical protein HMPREF1120_08590 [Exophiala dermatitidis
NIH/UT8656]
Length = 455
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 11/153 (7%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W+TT +SL F GE++EC ++ D TG+++GF F+ FK K +
Sbjct: 1 MFIGGLNWETTDQSLHDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVM--- 57
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
V ++ P +++ A KI+V V +D +E FF +FG +
Sbjct: 58 ---VKEHFLDGKIIDPKRAIPRDEQEKTA-----KIFVGGVSQDATEEDFESFFAQFGRV 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
+ D TG+ RGF + + + LE
Sbjct: 110 IDATLMMDKDTGRPRGFGFVTFDSDAAVERCLE 142
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
KIFV G+ D T+E S F G + + L++DK TG+ +GF F+ F + A + L+
Sbjct: 84 KIFVGGVSQDATEEDFESFFAQFGRVIDATLMMDKDTGRPRGFGFVTFDSDAAVERCLE 142
>gi|133258|sp|P17130.1|ROA1_XENLA RecName: Full=Heterogeneous nuclear ribonucleoproteins A1 homolog;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand-binding protein;
AltName: Full=hnRNP core protein A1
gi|214239|gb|AAA49741.1| ribonucleoprotein A1a [Xenopus laevis]
Length = 365
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL F G + +C ++ D + +++GF F+ + + A+
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + ++ G +KI+V + D E++ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA ++ + K + + H Q +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKA 180
>gi|432899438|ref|XP_004076558.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 1
[Oryzias latipes]
Length = 328
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ V + ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 QKHSVLIKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++ + FD TT + RGF +++ + K E ++C+KA
Sbjct: 136 VDDAMLMFDKTTNRHRGFGFITFESEDIVEKVCEIHFHEINNKMVECKKA 185
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++++ L+ DK T + +GF FI F++ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFESEDIVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>gi|50548677|ref|XP_501808.1| YALI0C13860p [Yarrowia lipolytica]
gi|49647675|emb|CAG82118.1| YALI0C13860p [Yarrowia lipolytica CLIB122]
Length = 367
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+F+ GL W+TT ESL + F GE+ EC ++ D +GK++GF F+ F+ K V A+
Sbjct: 1 MFIGGLNWETTDESLTNYFAQFGEVLECTVMRDHFSGKSRGFGFLTFRDPK-CVNAVMAK 59
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ ++ ++ + A +EQ + KI+V V DV +E + FFE++G +
Sbjct: 60 EHYLDGKIIDPKRAIP------REEQDKTS----KIFVGGVGSDVTEEDYKQFFEQYGTV 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNS 288
+ D +G+ RGF + + + L +P + + ++ K AE +++ + S
Sbjct: 110 IDAQLMIDKDSGRPRGFGFVTFDSEQAMNTILAQPLLILKDKPIEV-KRAENRSKGAGAS 168
Query: 289 SSSN 292
+ +N
Sbjct: 169 AVAN 172
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV G+G D T+E F G + + +L+IDK +G+ +GF F+ F + +A L
Sbjct: 84 KIFVGGVGSDVTEEDYKQFFEQYGTVIDAQLMIDKDSGRPRGFGFVTFDSEQAMNTILAQ 143
Query: 168 P 168
P
Sbjct: 144 P 144
>gi|402882999|ref|XP_003905018.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Papio
anubis]
Length = 378
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKKAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK 281
FE++G+IET + D +GK GFA + + K + + GH + +KA +
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKTGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205
Query: 282 NRTSSNS 288
S+ S
Sbjct: 206 EMQSAGS 212
>gi|347963748|ref|XP_310701.5| AGAP000399-PA [Anopheles gambiae str. PEST]
gi|333467053|gb|EAA06653.5| AGAP000399-PA [Anopheles gambiae str. PEST]
Length = 363
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+T+ + L F G+IE + D TG+++GFAFIV+K+ +
Sbjct: 99 RD-DDRKLFVGGLSWETSDKELKEHFSQYGDIESINVKTDPNTGRSRGFAFIVYKSADSI 157
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + + +NN+ + A A G KI+V + ++ E+++ F
Sbjct: 158 DKVVAVSEHVINNKKVDPKKA-------------KARYG--KIFVGGLTSEISDEEIKTF 202
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + + L+ P++ G ++ +KA
Sbjct: 203 FGQFGNIVEVEMPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKAT 259
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRDVSQRK-----IFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + K+ + +H++ D + K IFV GL + + E + + FG G I E +
Sbjct: 154 ADSIDKVVAVSEHVINNKKVDPKKAKARYGKIFVGGLTSEISDEEIKTFFGQFGNIVEVE 213
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F + + + LK P++ ++ + + A+ P
Sbjct: 214 MPFDKQKNQRKGFCFITFDSEQVVNELLKTPKQTISGKEVDVKKATPKP 262
>gi|195016128|ref|XP_001984346.1| GH15068 [Drosophila grimshawi]
gi|193897828|gb|EDV96694.1| GH15068 [Drosophila grimshawi]
Length = 379
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ ESL FG G+I E ++ D T +++GF F+ F + K L
Sbjct: 40 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 99
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A P + + +KI+V + E ++ +FE+FG
Sbjct: 100 GTHELDGKKVDPKVAFPRRAHPKMVTR------TKKIFVGGLSAPTTLEDVKSYFEQFGP 153
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD T + RGF +++ + K E ++C+KA
Sbjct: 154 IEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKA 203
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT E + S F G IE+ L+ DK T + +GF F+ F++ K +
Sbjct: 128 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 187
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 188 IHFHEINNKMVECKKA 203
>gi|23505939|gb|AAN28829.1| At1g20880/F9H16_14 [Arabidopsis thaliana]
Length = 274
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%)
Query: 85 AATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVT 144
A IP H L + D + K+FV GL W+T E+L F G+I E ++ DK T
Sbjct: 2 AYHSIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNT 61
Query: 145 GKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
G++KG+ F+ F+ +AA +A +P ++ R A+C LAS+G
Sbjct: 62 GRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLG 102
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + + E LR F+++G+I + D TG+S+G+ ++ E AR+A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + +G + C A+ G++R
Sbjct: 85 PTPIIDGRRANCNLASLGRSR 105
>gi|326518012|dbj|BAK07258.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 275
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%)
Query: 95 HILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
H L D + K+FV GL W+T E L + F G+I E ++ D+ TG++KG+ F+
Sbjct: 22 HYLSGPYGDTTYTKVFVGGLAWETRSEGLRAHFDAYGDILEAVVITDRATGRSKGYGFVT 81
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVK 192
F+ +A A +P ++ R A+C LA +G GP V
Sbjct: 82 FRDPDSARMACMDPYPVIDGRRANCNLAILGRPGPAVP 119
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + E LR F+ +G+I + D TG+S+G+ ++ + AR A +
Sbjct: 35 KVFVGGLAWETRSEGLRAHFDAYGDILEAVVITDRATGRSKGYGFVTFRDPDSARMACMD 94
Query: 263 PQKMFEGHQLQCQKAAEGK 281
P + +G + C A G+
Sbjct: 95 PYPVIDGRRANCNLAILGR 113
>gi|186478756|ref|NP_564168.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9392682|gb|AAF87259.1|AC068562_6 Contains similarity to seb4D protein from Mus musculus gb|X75316
and contains a RNA recognition PF|00076 motif
[Arabidopsis thaliana]
gi|332192109|gb|AEE30230.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 291
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W+T + + F GEI E ++ DK TGK+KG+ F+ F+ +A
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 163 KALKNPQRKVNNRMASCQLASVG---PTGPGVKEQGAA 197
+A+ +P ++ R A+C +AS G P+ P + QG +
Sbjct: 73 RAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGS 110
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + +++R +F++FGEI I D TGKS+G+ ++ + A +A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 263 PQKMFEGHQLQCQKAAEGKNRTSS 286
P + +G + C A+ G+ R S+
Sbjct: 78 PNPVIDGRKANCNIASFGRPRPST 101
>gi|147900728|ref|NP_001081282.1| heterogeneous nuclear ribonucleoproteins A1 homolog [Xenopus
laevis]
gi|47938744|gb|AAH72090.1| LOC397751 protein [Xenopus laevis]
Length = 365
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL F G + +C ++ D + +++GF F+ + + A+
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + ++ G +KI+V + D E++ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA ++ + K + + H + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNCEVRKA 180
>gi|15010636|gb|AAK73977.1| At1g20880/F9H16_14 [Arabidopsis thaliana]
Length = 274
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%)
Query: 85 AATKIPLLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVT 144
A IP H L + D + K+FV GL W+T E+L F G+I E ++ DK T
Sbjct: 2 AYHSIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNT 61
Query: 145 GKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
G++KG+ F+ F+ +AA +A +P ++ R A+C LAS+G
Sbjct: 62 GRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLG 102
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + + E LR F+++G+I + D TG+S+G+ ++ E AR+A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + +G + C A+ G++R
Sbjct: 85 PTPIIDGRRANCNLASLGRSR 105
>gi|356522484|ref|XP_003529876.1| PREDICTED: uncharacterized protein LOC100786208 [Glycine max]
Length = 296
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 55/83 (66%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + KIFV GL W+T ++++ F GEI E ++ DK TG++KG+ F+ FK ++A+
Sbjct: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 79
Query: 163 KALKNPQRKVNNRMASCQLASVG 185
+A +NP ++ R A+C LAS+G
Sbjct: 80 RACQNPSPVIDGRRANCNLASLG 102
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V + + +++ +R +FE+FGEI + D TG+S+G+ +K E A +A +
Sbjct: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 84
Query: 263 PQKMFEGHQLQCQKAAEG--KNR 283
P + +G + C A+ G KNR
Sbjct: 85 PSPVIDGRRANCNLASLGASKNR 107
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
R Q +F+ L ++L F G I CK+ D+ G +KG+ F+ ++T +AA
Sbjct: 141 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAA 199
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKL 218
A+K+ VN + + + VG Q + + IYV NV +DV E+
Sbjct: 200 TNAIKH----VNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEF 255
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RG FE++GEI + + D TGKSRGF + E A A+E
Sbjct: 256 RGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I+V + D T E F GEI L D TGK++GF F+ F +AA A++
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE-- 298
Query: 169 QRKVNNRMASCQLASVG------PTGPGVKEQGAAAQGER-------KIYVSNVPRDVEK 215
+N Q VG +++Q AA+ E+ +Y+ N+ D++
Sbjct: 299 --ALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 356
Query: 216 EKLRGFFERFGEIETGPI 233
EKLR F +G I + +
Sbjct: 357 EKLRELFSSYGNITSAKV 374
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 21/174 (12%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V L T+ L F G++ ++ D VT ++ G+A++ + +AL++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED- 118
Query: 169 QRKVNNRMAS---CQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+N + C++ P +++ G QG +++ N+ ++ + L F F
Sbjct: 119 ---LNYTLIKGRPCRIM-WSQRDPALRKTG---QG--NVFIKNLDTAIDNKALHDTFAAF 169
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-------PQKMFEGHQL 272
G I + + D G S+G+ Y+T E A A++ +K+F GH +
Sbjct: 170 GNILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
+ A R Q +F+ L ++L F G I CK+ D+ +G +KG+ F+ ++T
Sbjct: 140 DPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-SGASKGYGFVHYET 198
Query: 158 RKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVE 214
+AA +A+K+ VN + + + VG P Q + + IYV N+P +
Sbjct: 199 DEAAAQAIKH----VNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEAT 254
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273
+E+ R FE+FG++ + + D TGKSRGF + E A A++E K F+G L
Sbjct: 255 EEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLY 314
Query: 274 CQKAAEGKNR 283
+A + R
Sbjct: 315 VGRAQKKHER 324
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I+V + + T+E F G++ L D TGK++GF F+ F + A A+
Sbjct: 244 IYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVD-- 301
Query: 169 QRKVNNRMASCQLASVGPTGPG------VKEQGAAAQGER-------KIYVSNVPRDVEK 215
++N + Q VG ++ AA+ E+ +YV N+ D++
Sbjct: 302 --ELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDDIDD 359
Query: 216 EKLRGFFERFGEIETGPIGFD 236
EKLR F+ FG I + + D
Sbjct: 360 EKLRELFQSFGSITSAKVMRD 380
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V L T+ L F G + ++ D ++ ++ G+A++ + T KAL+
Sbjct: 63 LYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGEKALE-- 120
Query: 169 QRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
++N + + + P +++ G QG +++ N+ ++ + L F FG
Sbjct: 121 --ELNYTLIKGRPCRIMWSQRDPALRKNG---QG--NVFIKNLDVAIDNKALHDTFAAFG 173
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-------PQKMFEGHQL 272
I + + D +G S+G+ Y+T E A +A++ +K+F GH +
Sbjct: 174 NILSCKVAQD-ESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHI 225
>gi|356560243|ref|XP_003548403.1| PREDICTED: uncharacterized protein LOC100788899 [Glycine max]
Length = 291
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 55/83 (66%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + KIFV GL W+T ++++ F GEI E ++ DK TG++KG+ F+ FK ++A+
Sbjct: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAM 79
Query: 163 KALKNPQRKVNNRMASCQLASVG 185
+A +NP ++ R A+C LAS+G
Sbjct: 80 RACQNPSPVIDGRRANCNLASLG 102
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
KI+V + + +++ +R +FE+FGEI + D TG+S+G+ +K E A +A +
Sbjct: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQN 84
Query: 263 PQKMFEGHQLQCQKAAEG--KNR 283
P + +G + C A+ G KNR
Sbjct: 85 PSPVIDGRRANCNLASLGASKNR 107
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
R Q +F+ L ++L F G I CK+ D+ G +KG+ F+ ++T +AA
Sbjct: 157 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAA 215
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKL 218
A+K+ VN + + + VG Q + + IYV NV +DV E+
Sbjct: 216 TNAIKH----VNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEF 271
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RG FE++GEI + + D TGKSRGF + E A A+E
Sbjct: 272 RGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 314
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I+V + D T E F GEI L D TGK++GF F+ F +AA A++
Sbjct: 257 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE-- 314
Query: 169 QRKVNNRMASCQLASVGPTGPG------VKEQGAAAQGER-------KIYVSNVPRDVEK 215
+N Q VG +++Q AA+ E+ +Y+ N+ D++
Sbjct: 315 --ALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 372
Query: 216 EKLRGFFERFGEIETGPI 233
EKLR F +G I + +
Sbjct: 373 EKLRELFSSYGNITSAKV 390
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V L T+ L F G++ ++ D VT ++ G+A++ + +AL++
Sbjct: 76 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED- 134
Query: 169 QRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+N + + + P +++ G QG +++ N+ ++ + L F FG
Sbjct: 135 ---LNYTLIKGRPCRIMWSQRDPALRKTG---QG--NVFIKNLDTAIDNKALHDTFAAFG 186
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-------PQKMFEGHQL 272
I + + D G S+G+ Y+T E A A++ +K+F GH +
Sbjct: 187 NILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 238
>gi|255641990|gb|ACU21262.1| unknown [Glycine max]
Length = 220
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
+AL+ P + ++ R+A C LA +G A RK+Y+ ++ +V E L +F
Sbjct: 6 QALRAPSKLIDGRLAVCNLACESLSG----TSSAPDLSLRKLYIGSLSPEVTSEILLNYF 61
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
R GEIE G + +D T +SRGF YKT E A+KA+++ +KM G + + A K
Sbjct: 62 ARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDVEKMLGGRNIVVKYADSHKG 121
Query: 283 RT 284
+T
Sbjct: 122 KT 123
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D+S RK+++ L + T E LL+ F GEIEE + D+ T +++GF F+ +KT +AA
Sbjct: 37 DLSLRKLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAK 96
Query: 163 KALKNPQRKVNNR 175
KA+ + ++ + R
Sbjct: 97 KAIDDVEKMLGGR 109
>gi|195453885|ref|XP_002073986.1| GK12850 [Drosophila willistoni]
gi|194170071|gb|EDW84972.1| GK12850 [Drosophila willistoni]
Length = 641
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ E L F G + + ++ D VT +++GF FI F+
Sbjct: 195 DPAPGKLFVGGLSWQTSSEKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVD 254
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K LK P ++ + + P K + A +KI+V V +D ++++ +F
Sbjct: 255 KVLKVPIHTLDGK-------KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSADEVKAYF 307
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG +E + D T + RGF ++ + + E + +++C+KA
Sbjct: 308 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 362
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + EKL+ +F FG + I D T +SRGF ++ K L+
Sbjct: 200 KLFVGGLSWQTSSEKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVDKVLKV 259
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P +G ++ K A KNR
Sbjct: 260 PIHTLDGKKID-PKHATPKNR 279
>gi|195125567|ref|XP_002007249.1| GI12835 [Drosophila mojavensis]
gi|193918858|gb|EDW17725.1| GI12835 [Drosophila mojavensis]
Length = 383
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ ESL FG G+I E ++ D T +++GF F+ F + K L
Sbjct: 44 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 103
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A P + + +KI+V + E ++ +FE+FG
Sbjct: 104 GTHELDGKKVDPKVAFPRRAHPKMVTR------TKKIFVGGLSAPTTLEDVKSYFEQFGP 157
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD T + RGF +++ + K E ++C+KA
Sbjct: 158 IEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKA 207
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT E + S F G IE+ L+ DK T + +GF F+ F++ K +
Sbjct: 132 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 191
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 192 IHFHEINNKMVECKKA 207
>gi|426372865|ref|XP_004053334.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Gorilla gorilla gorilla]
Length = 306
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 139 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 198
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 199 ARPHKVDGRVVEPKRA----VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 254
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264
+IE I D +GK RGFA + + K + + Q
Sbjct: 255 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVSKYQ 292
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RK+++ + + E LR FE++G + + D T +SRGF Y TVE A+
Sbjct: 139 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 198
Query: 262 EPQKMFEGHQLQCQKAAEGKN 282
+G ++ ++A ++
Sbjct: 199 ARPHKVDGRVVEPKRAVSRED 219
>gi|357123817|ref|XP_003563604.1| PREDICTED: uncharacterized protein LOC100823039 [Brachypodium
distachyon]
Length = 282
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%)
Query: 95 HILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
H L D + K+FV GL W+T E L + F G+I E ++ D+ TG++KG+ F+
Sbjct: 30 HYLSGPYGDTTYTKVFVGGLAWETRSEGLRAHFEAYGDILEAVVITDRATGRSKGYGFVT 89
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVK 192
F+ ++A A +P ++ R A+C LA +G GP V
Sbjct: 90 FRDPESARMACMDPYPVIDGRRANCNLAILGRPGPAVP 127
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + E LR FE +G+I + D TG+S+G+ ++ E AR A +
Sbjct: 43 KVFVGGLAWETRSEGLRAHFEAYGDILEAVVITDRATGRSKGYGFVTFRDPESARMACMD 102
Query: 263 PQKMFEGHQLQCQKAAEGK 281
P + +G + C A G+
Sbjct: 103 PYPVIDGRRANCNLAILGR 121
>gi|195451832|ref|XP_002073095.1| GK13337 [Drosophila willistoni]
gi|194169180|gb|EDW84081.1| GK13337 [Drosophila willistoni]
Length = 353
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT++ L FG G+I+ + D TG+++GFAFIVF +A
Sbjct: 62 RD-DDRKLFVGGLSWETTEKELRDHFGKFGDIDSINVKTDPQTGRSRGFAFIVFTNTEAI 120
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +N + V P ++ A G KI+V + ++ E++R +
Sbjct: 121 DKVSSAEEHVINGK-------KVDP------KKAKARHG--KIFVGGLTTEISDEEIRTY 165
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + L+ P++ G ++ ++A
Sbjct: 166 FSQFGTIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRAT 222
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
KIFV GL + + E + + F G I E ++ DK + KGF FI F + + LK
Sbjct: 147 KIFVGGLTTEISDEEIRTYFSQFGTIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 206
Query: 168 PQRKVNNRMASCQLASVGP 186
P++K++ + + A+ P
Sbjct: 207 PKQKISGKEVDVKRATPKP 225
>gi|432104101|gb|ELK30931.1| Heterogeneous nuclear ribonucleoprotein A/B [Myotis davidii]
Length = 308
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
+FV L WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 1 MFVGHLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 169 QRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228
+ K++ R+ + A P +KI+V + + +EK+R +F FGEI
Sbjct: 61 EHKLDGRVIDPKKAMAMKKEPV-----------KKIFVGGLNPEATEEKIREYFGEFGEI 109
Query: 229 ETGPIGFDITTGKSRGFAIFVYKTVEG-ARKALEEPQKMFEGHQLQC 274
E + D + K RGF +K E +K LE+ G +++
Sbjct: 110 EAIDLPMDPKSNKRRGFVFITFKEEEEPVKKVLEKKFHTISGSKIEA 156
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 204 IYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263
++V ++ D K+ L+ +F +FGE+ I D TG+SRGF ++K K L++
Sbjct: 1 MFVGHLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 60
Query: 264 QKMFEGHQLQCQKA 277
+ +G + +KA
Sbjct: 61 EHKLDGRVIDPKKA 74
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+KIFV GL + T+E + FG GEIE L +D + K +GF FI FK + VK +
Sbjct: 83 KKIFVGGLNPEATEEKIREYFGEFGEIEAIDLPMDPKSNKRRGFVFITFKEEEEPVKKV 141
>gi|390608551|dbj|BAM21252.1| RRM-containing protein [Ephydatia fluviatilis]
Length = 431
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 8/167 (4%)
Query: 99 TADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
T + D S+ KIFV GL W T+ E L F GE+ EC ++ D T +++GF FI FK
Sbjct: 41 TPNGDTSKPTKIFVGGLSWQTSSEKLAEYFARFGEVLECNIMRDPSTRRSRGFGFITFKD 100
Query: 158 RKAAVKALKNPQRK---VNNRMASCQLASVGPTGPGVKEQG---AAAQGERKIYVSNVPR 211
+ K L+ ++ ++++ ++A V P PG K A ++I+V +
Sbjct: 101 PASVSKVLETHAQEPIVLDDKNIDPKIA-VPPKRPGNKVMSPPWTAPSQTKRIFVGGLSS 159
Query: 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
D + L+ +F+ FG I+ + +D T + RGF + + + A K
Sbjct: 160 DSTEMDLQEYFQEFGTIQDVQLMYDRNTSRHRGFGFVTFDSEKPAEK 206
>gi|224065561|ref|XP_002301858.1| predicted protein [Populus trichocarpa]
gi|222843584|gb|EEE81131.1| predicted protein [Populus trichocarpa]
Length = 182
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 86/175 (49%), Gaps = 9/175 (5%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV G+ WDTT+++L F GE+ + ++ DK TG+ +GF F+VF + + +
Sbjct: 2 DSDEGKLFVGGIAWDTTEDTLRDHFNQYGEVSQVVIMRDKTTGRPRGFGFVVF-SDPSVL 60
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
+ + + ++ R S+ G + G +KI+V +P V ++ R +F
Sbjct: 61 DPVLHDKHTIDGRTVIILPLSL--------LWGLSCIGTKKIFVGGLPSTVTEDGFRQYF 112
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ +G + + +D T + RGF + + + L++ G ++ ++A
Sbjct: 113 QSYGHVNDVVVMYDQQTQRPRGFGFITFDSEDAVDNVLQKTFHELNGKLVEVKRA 167
>gi|156380774|ref|XP_001631942.1| predicted protein [Nematostella vectensis]
gi|156218991|gb|EDO39879.1| predicted protein [Nematostella vectensis]
Length = 186
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W TT E L F GE++EC ++ D VT +++GF F+ FK KA L +
Sbjct: 1 KMFIGGLSWQTTAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNS 60
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++++ + +LA V P +KI++ + + +E ++ +F +FG+
Sbjct: 61 GAQELDGKKIDPKLA-VPKRAP-----AKMVTTTKKIFIGGLSTNTSEEDMKKYFSQFGK 114
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
I + FD T + RGF +++ A KA + + +++ +KA
Sbjct: 115 ITETMLMFDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKA 164
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
+ +KIF+ GL +T++E + F G+I E L+ DK T + +GF F+ F++ +A K
Sbjct: 86 TTTKKIFIGGLSTNTSEEDMKKYFSQFGKITETMLMFDKATQRHRGFGFVTFESENSADK 145
Query: 164 ALKNPQRKVNNRMASCQLA 182
A +NN+ + A
Sbjct: 146 ACDTQYHLINNKKVEVKKA 164
>gi|432933127|ref|XP_004081818.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like [Oryzias latipes]
Length = 340
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 10/196 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT+ESL + F G + +C ++ D + +++GF F+ + A+K
Sbjct: 13 RKLFIGGLSFETTEESLRAHFEQWGSLTDCVVMRDPNSKRSRGFGFVTYSNVTEVDDAMK 72
Query: 167 NPQRKVNNRMASCQ--LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + ++ PG A +KI+V + D E+ +R +FE+
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSNKPG------AHLTVKKIFVGGIKEDTEEYHIREYFEK 126
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGK--N 282
+G+IE I + +TGK RGF + + K + + + H + +KA + N
Sbjct: 127 YGKIECIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHIINFHNCEVRKALSKQEMN 186
Query: 283 RTSSNSSSSNNQAQMM 298
SSN S M
Sbjct: 187 TISSNRGRSGGSGNFM 202
>gi|359806944|ref|NP_001241070.1| uncharacterized protein LOC100788634 [Glycine max]
gi|255635629|gb|ACU18164.1| unknown [Glycine max]
Length = 253
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + KIFV GL W T +++L F GEI E ++ DK+TG++KG+ F+ F+ +A+
Sbjct: 20 DATYTKIFVGGLAWGTKRDTLKRYFDQFGEILEAVVITDKITGRSKGYGFVTFRDPNSAI 79
Query: 163 KALKNPQRKVNNRMASCQLASVG 185
+A NP ++ R A+C LA++G
Sbjct: 80 RACHNPYPVIDGRRANCNLAALG 102
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 174 NRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPI 233
N+M S LA K+ G A KI+V + +++ L+ +F++FGEI +
Sbjct: 7 NKMMSPNLA---------KQVGDATY--TKIFVGGLAWGTKRDTLKRYFDQFGEILEAVV 55
Query: 234 GFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN------ 287
D TG+S+G+ ++ A +A P + +G + C AA G + +
Sbjct: 56 ITDKITGRSKGYGFVTFRDPNSAIRACHNPYPVIDGRRANCNLAALGAQKFDPSITGRQK 115
Query: 288 -SSSSNNQAQMMIQ 300
SS S N A + +Q
Sbjct: 116 LSSPSWNMAPIPLQ 129
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
R Q +F+ L ++L F G I CK+ D+ G +KG+ F+ ++T +AA
Sbjct: 141 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAA 199
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKL 218
A+K+ VN + + + VG Q + + IYV NV +DV E+
Sbjct: 200 TNAIKH----VNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEF 255
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RG FE++GEI + + D TGKSRGF + E A A+E
Sbjct: 256 RGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I+V + D T E F GEI L D TGK++GF F+ F +AA A++
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE-- 298
Query: 169 QRKVNNRMASCQLASVGPTGPG------VKEQGAAAQGER-------KIYVSNVPRDVEK 215
+N Q VG +++Q AA+ E+ +Y+ N+ D++
Sbjct: 299 --ALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 356
Query: 216 EKLRGFFERFGEIETGPI 233
EKLR F +G I + +
Sbjct: 357 EKLRELFSSYGNITSAKV 374
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V L T+ L F G++ ++ D VT ++ G+A++ + +AL++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED- 118
Query: 169 QRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+N + + + P +++ G QG +++ N+ ++ + L F FG
Sbjct: 119 ---LNYTLIKGRPCRIMWSQRDPALRKTG---QG--NVFIKNLDTAIDNKALHDTFAAFG 170
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-------PQKMFEGHQL 272
I + + D G S+G+ Y+T E A A++ +K+F GH +
Sbjct: 171 NILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
>gi|154183823|gb|ABS70764.1| Hnrp1 [Haplochromis burtoni]
Length = 289
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL + F G + +C ++ D + +++GF F+ + + + A+
Sbjct: 14 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSVQEVDAAMS 73
Query: 167 NPQRKVNNRMASCQ--LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + ++ PG A +KI+V + D E+ LR +F++
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSNRPG------AHITVKKIFVGGIKEDTEESHLRDYFQQ 127
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FG+IE I D TGK RGFA + + + + + H + +KA
Sbjct: 128 FGKIEVIDIMTDRNTGKKRGFAFVTFDDHDSVDRIVIQKYHTINSHNCEVRKA 180
>gi|62484464|ref|NP_730245.2| RNA-binding protein 6, isoform A [Drosophila melanogaster]
gi|194872120|ref|XP_001972967.1| GG15829 [Drosophila erecta]
gi|195328324|ref|XP_002030866.1| GM24349 [Drosophila sechellia]
gi|195494905|ref|XP_002095039.1| GE22169 [Drosophila yakuba]
gi|75027590|sp|Q9VVE5.3|MSIR6_DROME RecName: Full=RNA-binding protein Musashi homolog Rbp6
gi|21483526|gb|AAM52738.1| RE25373p [Drosophila melanogaster]
gi|61678495|gb|AAF49366.3| RNA-binding protein 6, isoform A [Drosophila melanogaster]
gi|190654750|gb|EDV51993.1| GG15829 [Drosophila erecta]
gi|194119809|gb|EDW41852.1| GM24349 [Drosophila sechellia]
gi|194181140|gb|EDW94751.1| GE22169 [Drosophila yakuba]
Length = 369
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ ESL FG G+I E ++ D T +++GF F+ F + K L
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A P + + +KI+V + E ++ +FE+FG
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKMVTR------TKKIFVGGLSAPTTLEDVKSYFEQFGP 143
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD T + RGF +++ + K E ++C+KA
Sbjct: 144 IEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKA 193
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT E + S F G IE+ L+ DK T + +GF F+ F++ K +
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 178 IHFHEINNKMVECKKA 193
>gi|297842407|ref|XP_002889085.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297334926|gb|EFH65344.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 283
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%)
Query: 95 HILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIV 154
H L + D + K+FV GL W+T E+L F GEI E ++ DK TG++KG+ F+
Sbjct: 12 HYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFEQFGEILEAVVIADKNTGRSKGYGFVT 71
Query: 155 FKTRKAAVKALKNPQRKVNNRMASCQLASVG 185
F+ +AA +A +P ++ R A+C LAS+G
Sbjct: 72 FRDPEAARRACADPTPIIDGRRANCNLASLG 102
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
K++V + + + E LR FE+FGEI + D TG+S+G+ ++ E AR+A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFEQFGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 263 PQKMFEGHQLQCQKAAEGKNR 283
P + +G + C A+ G+ R
Sbjct: 85 PTPIIDGRRANCNLASLGRPR 105
>gi|194748703|ref|XP_001956784.1| GF24401 [Drosophila ananassae]
gi|190624066|gb|EDV39590.1| GF24401 [Drosophila ananassae]
Length = 370
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ ESL FG G+I E ++ D T +++GF F+ F + K L
Sbjct: 31 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 90
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A P + + +KI+V + E ++ +FE+FG
Sbjct: 91 GTHELDGKKVDPKVAFPRRAHPKMVTR------TKKIFVGGLSAPTTLEDVKSYFEQFGP 144
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD T + RGF +++ + K E ++C+KA
Sbjct: 145 IEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKA 194
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT E + S F G IE+ L+ DK T + +GF F+ F++ K +
Sbjct: 119 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 178
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 179 IHFHEINNKMVECKKA 194
>gi|403221237|dbj|BAM39370.1| uncharacterized protein TOT_010000827 [Theileria orientalis strain
Shintoku]
Length = 326
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 93 HDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAF 152
HD ++ D KIF GL TT E L S F G++ E ++V DK+TG+++GF F
Sbjct: 42 HDPASLLSENDYESNKIFAGGLCRTTTAEQLRSYFESFGKVTETEVVKDKITGRSRGFGF 101
Query: 153 IVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGA-----AAQGERKIYVS 207
+ F + + + L + + VN+ +LA V+++ + ++I+V
Sbjct: 102 VTFASNDSVQRVL-SQEHTVNDVQVEVKLA--------VRKEKSKILAPKYDQTKRIFVG 152
Query: 208 NVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260
+ +V + + +F R+G+I + D T K RG+ +Y+ V+ A K++
Sbjct: 153 GIAENVTESYFKDYFGRYGQISSHNFLMDKRTNKPRGYGFVIYENVDDAEKSI 205
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSN------VPRDVEKEKL 218
LK+ +N+ + +SV + PG A+ Y SN + R E+L
Sbjct: 13 LKDNNHSINSNYTNAYNSSVKSSNPGSGNHDPASLLSENDYESNKIFAGGLCRTTTAEQL 72
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKM 266
R +FE FG++ + D TG+SRGF + + + ++ L + +
Sbjct: 73 RSYFESFGKVTETEVVKDKITGRSRGFGFVTFASNDSVQRVLSQEHTV 120
>gi|359482522|ref|XP_002276110.2| PREDICTED: nucleolin-like [Vitis vinifera]
Length = 501
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 10/181 (5%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV G+ W+T++E + F GEI + +++D+ TG+ +GF FI F A
Sbjct: 195 DEDKEKLFVGGISWETSEEIFTNYFSNYGEITDSVIMMDRHTGRPRGFGFITFADPAVAD 254
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGP--GVKEQGAAAQGERKIYVSNVPRDVEKEKLRG 220
K L+ + + + V T P G++ +G + RKI+V +P + +++L+
Sbjct: 255 KVLE------EDHVIDGRAVEVKKTVPREGMEVRGVSKT--RKIFVGGIPSSLTEDELKD 306
Query: 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280
+F +G I I D TG+SRGF + + + + E + G +L K AE
Sbjct: 307 YFSSYGAIVENQIMLDHVTGRSRGFGFVTFVSEDAVERLFSEGKTHELGGKLVEIKKAEP 366
Query: 281 K 281
K
Sbjct: 367 K 367
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 195 GAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVE 254
G + + + K++V + + +E +F +GEI I D TG+ RGF +
Sbjct: 192 GESDEDKEKLFVGGISWETSEEIFTNYFSNYGEITDSVIMMDRHTGRPRGFGFITFADPA 251
Query: 255 GARKALEEPQKMFEGHQLQCQKAA 278
A K LEE + +G ++ +K
Sbjct: 252 VADKVLEEDH-VIDGRAVEVKKTV 274
>gi|442633006|ref|NP_001261979.1| RNA-binding protein 6, isoform G [Drosophila melanogaster]
gi|440215929|gb|AGB94672.1| RNA-binding protein 6, isoform G [Drosophila melanogaster]
Length = 371
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ ESL FG G+I E ++ D T +++GF F+ F + K L
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A P + + +KI+V + E ++ +FE+FG
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKMVTR------TKKIFVGGLSAPTTLEDVKSYFEQFGP 143
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD T + RGF +++ + K E ++C+KA
Sbjct: 144 IEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKA 193
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT E + S F G IE+ L+ DK T + +GF F+ F++ K +
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 178 IHFHEINNKMVECKKA 193
>gi|359073189|ref|XP_003587038.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Bos taurus]
Length = 321
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDVAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
K + + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKGTEELWELKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
R Q +F+ L ++L F G I CK+ D+ G +KG+ F+ ++T +AA
Sbjct: 141 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAA 199
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKL 218
A+K+ VN + + + VG Q + + IYV NV +DV E+
Sbjct: 200 TNAIKH----VNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEF 255
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RG FE++GEI + + D TGKSRGF + E A A+E
Sbjct: 256 RGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I+V + D T E F GEI L D TGK++GF F+ F +AA A++
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE-- 298
Query: 169 QRKVNNRMASCQLASVGPTGPG------VKEQGAAAQGER-------KIYVSNVPRDVEK 215
+N Q VG +++Q AA+ E+ +Y+ N+ D++
Sbjct: 299 --ALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 356
Query: 216 EKLRGFFERFGEIETGPI 233
EKLR F +G I + +
Sbjct: 357 EKLRELFSSYGNITSAKV 374
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V L T+ L F G++ ++ D VT ++ G+A++ + +AL++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED- 118
Query: 169 QRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+N + + + P +++ G QG +++ N+ ++ + L F FG
Sbjct: 119 ---LNYTLIKGRPCRIMWSQRDPALRKTG---QG--NVFIKNLDTAIDNKALHDTFAAFG 170
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-------PQKMFEGHQL 272
I + + D G S+G+ Y+T E A A++ +K+F GH +
Sbjct: 171 NILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
>gi|195591012|ref|XP_002085238.1| GD12423 [Drosophila simulans]
gi|194197247|gb|EDX10823.1| GD12423 [Drosophila simulans]
Length = 351
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ ESL FG G+I E ++ D T +++GF F+ F + K L
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A P + + +KI+V + E ++ +FE+FG
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKMVTR------TKKIFVGGLSAPTTLEDVKSYFEQFGP 143
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD T + RGF +++ + K E ++C+KA
Sbjct: 144 IEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKA 193
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT E + S F G IE+ L+ DK T + +GF F+ F++ K +
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 178 IHFHEINNKMVECKKA 193
>gi|195387610|ref|XP_002052487.1| GJ21323 [Drosophila virilis]
gi|194148944|gb|EDW64642.1| GJ21323 [Drosophila virilis]
Length = 421
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L++
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPANVNHVLQS 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFGRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNNQA 295
+SNN A
Sbjct: 179 GQNSNNSA 186
>gi|195329216|ref|XP_002031307.1| GM25920 [Drosophila sechellia]
gi|194120250|gb|EDW42293.1| GM25920 [Drosophila sechellia]
Length = 345
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFIVF +A
Sbjct: 52 RD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI 110
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +N++ + A A G KI+V + ++ E+++ +
Sbjct: 111 EKVSAVEEHIINSKKVDPKKAK-------------ARHG--KIFVGGLTTEISDEEIKTY 155
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + L+ P++ G ++ ++A
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRAT 212
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 85 AATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLV 139
A K+ + +HI+ + D KIFV GL + + E + + FG G I E ++
Sbjct: 109 AIEKVSAVEEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMP 168
Query: 140 IDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
DK + KGF FI F + + LK P++K+ + + A+ P
Sbjct: 169 FDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 183 SVGPTGPGVKEQGAAA---QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239
+ G T Q AA+ +RK++V + + +++LR F ++GEIE+ + D T
Sbjct: 34 AAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQT 93
Query: 240 GKSRGFAIFVYKTVEGARK--ALEE 262
G+SRGFA V+ E K A+EE
Sbjct: 94 GRSRGFAFIVFTNTEAIEKVSAVEE 118
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
R Q +F+ L ++L F G I CK+ D+ G +KG+ F+ ++T +AA
Sbjct: 141 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAA 199
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKL 218
A+K+ VN + + + VG Q + + IYV NV +DV E+
Sbjct: 200 TNAIKH----VNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEF 255
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
RG FE++GEI + + D TGKSRGF + E A A+E
Sbjct: 256 RGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I+V + D T E F GEI L D TGK++GF F+ F +AA A++
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE-- 298
Query: 169 QRKVNNRMASCQLASVGPTGPG------VKEQGAAAQGER-------KIYVSNVPRDVEK 215
+N Q VG +++Q AA+ E+ +Y+ N+ D++
Sbjct: 299 --ALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 356
Query: 216 EKLRGFFERFGEIETGPI 233
EKLR F +G I + +
Sbjct: 357 EKLRELFSSYGNITSAKV 374
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V L T+ L F G++ ++ D VT ++ G+A++ + +AL++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED- 118
Query: 169 QRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+N + + + P +++ G QG +++ N+ ++ + L F FG
Sbjct: 119 ---LNYTLIKGRPCRIMWSQRDPALRKTG---QG--NVFIKNLDTAIDNKALHDTFAAFG 170
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-------PQKMFEGHQL 272
I + + D G S+G+ Y+T E A A++ +K+F GH +
Sbjct: 171 NILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
>gi|357140379|ref|XP_003571746.1| PREDICTED: uncharacterized protein LOC100831046 isoform 1
[Brachypodium distachyon]
Length = 403
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 13/193 (6%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
S KIFV G+ W+TT+E+ FG G I + ++ DK T +GF F+ F K
Sbjct: 63 SSGKIFVGGVAWETTEETFSKHFGKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKV 122
Query: 165 LKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQG--ERKIYVSNVPRDVEKEKLRGFF 222
L++ + ++ R + T P +E+ ++ G RKI+V +P + ++ LR F
Sbjct: 123 LED-EHNIDGRTVEVKR-----TVP--REEMSSKDGPKTRKIFVGGLPASLSEDDLRDHF 174
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGK 281
+G++ I D +TG+SRGF +++ + + + E + + G Q++ +KA K
Sbjct: 175 SSYGKVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 234
Query: 282 N--RTSSNSSSSN 292
+ SSN SS+
Sbjct: 235 HGGDHSSNGRSSH 247
>gi|327271181|ref|XP_003220366.1| PREDICTED: ELAV-like protein 4-like [Anolis carolinensis]
Length = 410
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 9/165 (5%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
++TA D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ +
Sbjct: 80 MQTAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 139
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
K A KA+ N + + + +++ P+ +++ +YVS +P+ + ++
Sbjct: 140 DPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQK 190
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
+L F ++G I T I D TG SRG + A +A++
Sbjct: 191 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 235
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 182 ASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGK 241
AS P + A + + V+ +P+++ +E+ R F GEIE+ + D TG+
Sbjct: 70 ASNSRNCPSPMQTAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ 129
Query: 242 SRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSNS 288
S G+ Y + A KA+ G +LQ + R SS S
Sbjct: 130 SLGYGFVNYIDPKDAEKAINT----LNGLRLQTKTIKVSYARPSSAS 172
>gi|195500849|ref|XP_002097550.1| GE24428 [Drosophila yakuba]
gi|194183651|gb|EDW97262.1| GE24428 [Drosophila yakuba]
Length = 345
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFIVF +A
Sbjct: 52 RD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI 110
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +N++ + A A G KI+V + ++ E+++ +
Sbjct: 111 DKVSAVDEHIINSKKVDPKKAK-------------ARHG--KIFVGGLTTEITDEEIKTY 155
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + L+ P++ G ++ ++A
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRAT 212
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 85 AATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLV 139
A K+ + +HI+ + D KIFV GL + T E + + FG G I E ++
Sbjct: 109 AIDKVSAVDEHIINSKKVDPKKAKARHGKIFVGGLTTEITDEEIKTYFGQFGNIVEVEMP 168
Query: 140 IDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
DK + KGF FI F + + LK P++K+ + + A+ P
Sbjct: 169 FDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 188 GPGVKEQGAAAQ--GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGF 245
G + GA+ Q +RK++V + + +++LR F ++GEIE+ + D TG+SRGF
Sbjct: 40 GSSDNQSGASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGF 99
Query: 246 AIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
A V+ E K + + ++ +KA
Sbjct: 100 AFIVFTNTEAIDKVSAVDEHIINSKKVDPKKA 131
>gi|195442400|ref|XP_002068946.1| GK18043 [Drosophila willistoni]
gi|194165031|gb|EDW79932.1| GK18043 [Drosophila willistoni]
Length = 386
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ ESL FG G+I E ++ D T +++GF F+ F + K L
Sbjct: 44 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 103
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A P + + +KI+V + E ++ +FE+FG
Sbjct: 104 GTHELDGKKVDPKVAFPRRAHPKMVTR------TKKIFVGGLSAPTTLEDVKSYFEQFGP 157
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD T + RGF +++ + K E ++C+KA
Sbjct: 158 IEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKA 207
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT E + S F G IE+ L+ DK T + +GF F+ F++ K +
Sbjct: 132 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 191
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 192 IHFHEINNKMVECKKA 207
>gi|356551592|ref|XP_003544158.1| PREDICTED: uncharacterized protein LOC100795907 [Glycine max]
Length = 479
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 25/185 (13%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ WDT +E L F GE+ E ++ D+ TG+A+GF F+VF A +K
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAIAEIVIK- 65
Query: 168 PQRKVNNRMASCQLA--------------SV-GPTGPGVKEQGAAAQGERKIYVSNVPRD 212
+ ++ RM + A S+ G GPG RKI+V +
Sbjct: 66 EKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRT---------RKIFVGGLAST 116
Query: 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272
V + + +F++FG I + +D T + RGF Y + E K L + G +
Sbjct: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
Query: 273 QCQKA 277
+ ++A
Sbjct: 177 EVKRA 181
>gi|347966951|ref|XP_321067.5| AGAP001993-PA [Anopheles gambiae str. PEST]
gi|333469826|gb|EAA01260.6| AGAP001993-PA [Anopheles gambiae str. PEST]
Length = 556
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 87/175 (49%), Gaps = 6/175 (3%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAV 162
D + K+FV GL W T+ E L FG G + + ++ D VT +++GF FI F+ +
Sbjct: 178 DPAPGKLFVGGLSWQTSSEKLSEYFGMFGTVTDVLIMKDPVTQRSRGFGFITFQEPNSVD 237
Query: 163 KALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
K L+ P ++ + + A+ P + + + +KI+V V +D E+++ +F
Sbjct: 238 KVLQVPIHTLDGKKIDPKHAT-----PKNRPK-TQSNKTKKIFVGGVSQDTSAEEVKAYF 291
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+FG++E + D T + RGF ++ + + E + +++C+KA
Sbjct: 292 SQFGKVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA 346
>gi|94482834|gb|ABF22450.1| heterogeneous nuclear ribonucleoprotein A1 [Takifugu rubripes]
Length = 255
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL + F G + +C ++ D + +++GF F+ + + A+
Sbjct: 13 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSVDEVDLAMT 72
Query: 167 NPQRKVNNRMASCQ--LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224
KV+ R+ + ++ PG A +KI+V + D E+ +R +FER
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSNRPG------AHVTVKKIFVGGIKEDTEESHIRDYFER 126
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FG+IE I D +GK RGFA + + + + + H + +KA
Sbjct: 127 FGKIEIIDIITDRNSGKKRGFAFVTFDDHDPVDRIVIQKYHTINSHNCEVRKA 179
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
V+ +KIFV G+ DT + + F G+IE ++ D+ +GK +GFAF+ F +
Sbjct: 101 VTVKKIFVGGIKEDTEESHIRDYFERFGKIEIIDIITDRNSGKKRGFAFVTFDDHDPVDR 160
Query: 164 ALKNPQRKVNNRMASCQL 181
+ +N+ +C++
Sbjct: 161 IVIQKYHTINSH--NCEV 176
>gi|400601150|gb|EJP68793.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 522
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W+TT +SL F GE+ EC ++ D TG+++GF F+ FK K V +
Sbjct: 117 KMFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSNTGRSRGFGFLTFKDAK-TVNIVMV 175
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ ++ ++ + A P +++ + KI+V V +D ++ R FF +FG
Sbjct: 176 KEHYLDGKIIDPKRAI-----PRDEQEKTS-----KIFVGGVSQDTTDQEFRDFFAQFGR 225
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ + D TG+ RGF +++ G + P ++ G ++ ++A
Sbjct: 226 VIDATLMMDKDTGRPRGFGFVTFESEAGVDNCISIPLEI-HGKPIEVKRA 274
>gi|307193268|gb|EFN76159.1| RNA-binding protein squid [Harpegnathos saltator]
Length = 334
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 15/175 (8%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
++ RK+FV GL W+TT + L F G+IE + D TG+++GFAFIVF ++ K
Sbjct: 71 LNDRKLFVGGLSWETTDKELREHFSSYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDK 130
Query: 164 ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223
+ +NN+ V P ++ A G KI+V + ++ + ++ FF
Sbjct: 131 IMAAGDHVINNK-------KVDP------KKAKARHG--KIFVGGLSTELSDDDIKNFFS 175
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
+FG I + FD T + +GF +++ + + L+ ++ G ++ +KA
Sbjct: 176 QFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTSKQTINGKEVDVKKAT 230
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 83 AAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK 137
A + KI DH++ D KIFV GL + + + + + F G I E +
Sbjct: 125 AESLDKIMAAGDHVINNKKVDPKKAKARHGKIFVGGLSTELSDDDIKNFFSQFGTIVEVE 184
Query: 138 LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
+ DK + KGF FI F++ + + LK ++ +N + + A+ P
Sbjct: 185 MPFDKTKNQRKGFCFITFESEQVVNELLKTSKQTINGKEVDVKKATPKP 233
>gi|297803432|ref|XP_002869600.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297315436|gb|EFH45859.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 455
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 22/188 (11%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA------- 160
K+F+ G+ WDT +E L FG G++ E ++ D+ TG+A+GF FIVF
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 161 ----------AVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVP 210
A KA+ ++V R AS + + P+ G G A+ +KI+V +P
Sbjct: 76 KHIIDGRTVEAKKAVPRDDQQVLKRHASP-MHLISPSHGG---NGGGAR-TKKIFVGGLP 130
Query: 211 RDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGH 270
+ + + + +F++FG I + +D T + RGF + + E L + G
Sbjct: 131 SSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGK 190
Query: 271 QLQCQKAA 278
++ ++A
Sbjct: 191 MVEVKRAV 198
>gi|116197887|ref|XP_001224755.1| hypothetical protein CHGG_07099 [Chaetomium globosum CBS 148.51]
gi|88178378|gb|EAQ85846.1| hypothetical protein CHGG_07099 [Chaetomium globosum CBS 148.51]
Length = 886
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL W+TT +SL F GE+ EC ++ D TG+++GF F+ FK K V +
Sbjct: 389 RKMFIGGLNWETTDQSLRDYFSQFGEVLECTVMRDGATGRSRGFGFLTFKDPK-TVNIVM 447
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
+ ++ ++ + A P +++ + KI+V V ++ + R +F +FG
Sbjct: 448 VKEHYLDGKIIDPKRAI-----PRDEQEKTS-----KIFVGGVSQETTDHEFREYFAQFG 497
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+ + D TG+ RGF +++ G L P ++ G ++ +KA
Sbjct: 498 RVVDATLMMDKDTGRPRGFGFVTFESEAGVDACLATPLEI-HGKPIEVKKA 547
>gi|325185730|emb|CCA20211.1| conserved unknown protein putative [Albugo laibachii Nc14]
Length = 465
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ G+ W+TT+E+L FG G + + L+ DK +G+ +GF F+ F + L+
Sbjct: 103 KLFIGGVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADVAVLDRVLEE 162
Query: 168 PQRKVNNRMASCQLA------SVGPTGPGVKEQGAAAQGE--------RKIYVSNVPRDV 213
++ R + A + GP+ V+ GA +G +K++V +P V
Sbjct: 163 SH-TIDGRTVEVKRAIPRDKTASGPS--DVRSSGAHGRGNSGGVITESKKVFVGGLPPSV 219
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGA 256
++ R +FE FG I + FD T +SRGF ++ EGA
Sbjct: 220 TEQDFRRYFEEFGRITDAVVMFDRETQRSRGFGFVTFEE-EGA 261
>gi|222423819|dbj|BAH19875.1| AT4G26650 [Arabidopsis thaliana]
Length = 452
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 22/188 (11%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKA------- 160
K+F+ G+ WDT +E L FG G++ E ++ D+ TG+A+GF FIVF
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 72
Query: 161 ----------AVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVP 210
A KA+ ++V R AS + + P+ G G A+ +KI+V +P
Sbjct: 73 KHIIDGRTVEAKKAVPRDDQQVLKRHASP-MHLISPSHGG---NGGGAR-TKKIFVGGLP 127
Query: 211 RDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGH 270
+ + + + +F++FG I + +D T + RGF + + E L + G
Sbjct: 128 SSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGK 187
Query: 271 QLQCQKAA 278
++ ++A
Sbjct: 188 MIEVKRAV 195
>gi|195113435|ref|XP_002001273.1| GI10695 [Drosophila mojavensis]
gi|193917867|gb|EDW16734.1| GI10695 [Drosophila mojavensis]
Length = 342
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFIVF +A
Sbjct: 53 RD-DDRKLFVGGLSWETTEKELRDHFGKFGEIESINVKTDPQTGRSRGFAFIVFTNTEAI 111
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
+ + +N++ V P ++ A G KI+V + ++ E+++ +
Sbjct: 112 DQVSAAEEHIINSK-------KVDP------KKAKARHG--KIFVGGLTTEISDEEIKTY 156
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD +GF + + + L+ P++ G ++ ++A
Sbjct: 157 FSQFGNIVEVEMPFDKQKSHRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRAT 213
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 73 YSKDQLIDLIAAAATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAF 127
++ + ID ++AA +HI+ + D KIFV GL + + E + + F
Sbjct: 105 FTNTEAIDQVSAA-------EEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYF 157
Query: 128 GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
G I E ++ DK KGF FI F + + LK P++K++ + + A+ P
Sbjct: 158 SQFGNIVEVEMPFDKQKSHRKGFCFITFDSEQVVTDLLKTPKQKISGKEVDVKRATPKP 216
>gi|149241445|ref|XP_001526315.1| hypothetical protein LELG_02873 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450438|gb|EDK44694.1| hypothetical protein LELG_02873 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 548
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT+E L F GE+ + ++ D TG+++GF F+ FK A+V A+
Sbjct: 205 KMFIGGLNWDTTEEGLAEHFRKYGEVVDYTIMKDNATGRSRGFGFLTFKD-PASVDAVIK 263
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ ++ ++ + A + + G KI+V + V + + FF +FG
Sbjct: 264 EEHILDGKLIDPKRA--------IAREDQDRVG--KIFVGGIDPMVTEREFNEFFSKFGS 313
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
I + D TG+SRGF Y + + K +G ++ ++AA
Sbjct: 314 IIDCQLMIDKDTGRSRGFGFITYDSPDAVDKVCVNKYLTLKGKAMEVKRAA 364
>gi|357146558|ref|XP_003574035.1| PREDICTED: uncharacterized protein LOC100832671 [Brachypodium
distachyon]
Length = 449
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
Q K+F+ G+ W+TT+E L F GE+ + ++ DK+TG+ +GF F+V+ A AL
Sbjct: 5 QGKLFIGGISWETTEEKLHEHFSTFGEVSQAAVMRDKLTGRPRGFGFVVYADPAAVDAAL 64
Query: 166 KNPQRKVNNRMASCQLA----------SVGP-----TGPGVKEQGAAAQGERKIYVSNVP 210
P ++ R + A +V P TG G A+ +KI+V +P
Sbjct: 65 LEPH-TLDGRTVDVKRALSREEQQASKAVNPSTGRNTGGGGGGNDASGTRTKKIFVGGLP 123
Query: 211 RDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGH 270
+ ++ R +F+ FG + + +D TT + RGF + + + + L + G
Sbjct: 124 SSLTDDEFRQYFQTFGAVTDVVVMYDQTTQRPRGFGFITFDSEDAVDRVLHKTFHDLGGK 183
Query: 271 QLQCQKA 277
++ ++A
Sbjct: 184 MVEVKRA 190
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 9/190 (4%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
+ A R Q +F+ L ++L F G I CK+ D+ +G +KG+ F+ ++T
Sbjct: 141 DPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDE-SGASKGYGFVHYET 199
Query: 158 RKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVE 214
+AA +A+K+ VN + + + VG P Q + + IYV N+P +
Sbjct: 200 DEAASQAIKH----VNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEAT 255
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273
E+ R FE+FG++ + + D TGKSRGF + E A A++E K F+G L
Sbjct: 256 DEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLY 315
Query: 274 CQKAAEGKNR 283
+A + R
Sbjct: 316 VGRAQKKHER 325
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I+V + + T E F G++ L D+ TGK++GF F+ F + A A+
Sbjct: 245 IYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVD-- 302
Query: 169 QRKVNNRMASCQLASVGPTGPG------VKEQGAAAQGER-------KIYVSNVPRDVEK 215
++N + Q VG +++ AA+ E+ +YV N+ DV+
Sbjct: 303 --ELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDD 360
Query: 216 EKLRGFFERFGEIETGPIGFD 236
EKLR F FG I + + D
Sbjct: 361 EKLRELFTPFGAITSAKVMRD 381
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V L T+ L F G + ++ D VT ++ G+A++ + T KAL+
Sbjct: 64 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKALE-- 121
Query: 169 QRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
++N + + + P +++ G QG +++ N+ ++ + L F FG
Sbjct: 122 --ELNYTLIKGRPCRIMWSQRDPALRKTG---QG--NVFIKNLDTAIDNKALHDTFAAFG 174
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-------PQKMFEGHQL 272
I + + D +G S+G+ Y+T E A +A++ +K+F GH +
Sbjct: 175 NILSCKVAQD-ESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHI 226
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,936,741,089
Number of Sequences: 23463169
Number of extensions: 298817222
Number of successful extensions: 2003796
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11303
Number of HSP's successfully gapped in prelim test: 7215
Number of HSP's that attempted gapping in prelim test: 1919854
Number of HSP's gapped (non-prelim): 67129
length of query: 446
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 300
effective length of database: 8,933,572,693
effective search space: 2680071807900
effective search space used: 2680071807900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 78 (34.7 bits)