BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013270
(446 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK
Sbjct: 91 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 198
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 199 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E A + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
+ K+F+ GL WDTT++ L F GE+ +C L +D +TG+++GF F++FK ++ K +
Sbjct: 96 EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155
Query: 166 KNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K+N ++ + A T VK KI+V + D +EK+R +F F
Sbjct: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKIREYFGGF 205
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GE+E+ + D T K RGF +K E +K +E
Sbjct: 206 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246
+ P E AA + E K+++ + D K+ L+ +F +FGE+ + D TG+SRGF
Sbjct: 82 SSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
++K E K +++ + G + ++A
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA 172
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 99 TADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR 158
TA R+ + K+F+ GL WDTT++ L F G++ +C L +D +TG+++GF F++FK
Sbjct: 89 TAQRE--EWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 159 KAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL 218
++ K + + K+N ++ + A T VK KI+V + D +EK+
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK----------KIFVGGLSPDTPEEKI 196
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
R +F FGE+E+ + D T K RGF +K E +K +E
Sbjct: 197 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 11/185 (5%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
D+ ET+ + K+F+ GL W+TT +SL F GE+ +C ++ D TG+++GF F+
Sbjct: 150 DNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFL 209
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
FK K V + + + ++ ++ + A P +++ A K++V VP D
Sbjct: 210 TFKNPK-CVNEVMSKEHHLDGKIIDPKRAI-----PREEQEKTA-----KMFVGGVPGDC 258
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
+E+ R FF +FG + + D TG+ RGF Y+ + +P G ++
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVE 318
Query: 274 CQKAA 278
++A
Sbjct: 319 VKRAT 323
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L + D K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +FE+FG+++ + FD TT + RGF +++ + K E ++C+K
Sbjct: 124 DVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L + D K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +FE+FG+++ + FD TT + RGF +++ + K E ++C+K
Sbjct: 124 DVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L + D K+F+ GL W TTQE L FG GE++EC ++ D +T +++GF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
+ K L + +++++ ++A + Q +KI+V + + E
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVE 123
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276
++ +FE+FG+++ + FD TT + RGF +++ + K E ++C+K
Sbjct: 124 DVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 183
Query: 277 A 277
A
Sbjct: 184 A 184
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +TT E + F G++++ L+ DK T + +GF F+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 167 NPQRKVNNRMASCQLAS----VGPTG 188
++NN+M C+ A + PTG
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTG 194
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 TTPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282
E++G+IE I D +GK RGFA + + K + + +GH + +KA +
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
Query: 283 RTSSNSS 289
S++SS
Sbjct: 186 MASASSS 192
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+ +++ R+ + A P +KI+V + + +EK+R +F +FGE
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPEATEEKIREYFGQFGE 184
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
IE + D K RGF +K + +K LE
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL + T+E + FG GEIE +L ID K +GF FI FK K L+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 167 NPQRKVNNRMASCQLASVGP 186
V+ + C++ P
Sbjct: 219 KKFHTVSG--SKCEIKVAQP 236
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 209 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 255
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 256 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 199 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 258
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 259 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 310
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 205 VLELKEHKLDGKLIDPKRA 223
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
L+ + S K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK
Sbjct: 41 LDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFK 100
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDV 213
+ K L+ + K++ ++ + A A +G+ +K++V + D
Sbjct: 101 DAASVDKVLELKEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDT 147
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
+E+++ +F FGEIE + D T + RGF Y E +K LE
Sbjct: 148 SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 16/174 (9%)
Query: 91 LLHDHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGF 150
LL H D + + K+F+ GL WDT+++ L GE+ +C + D VTG+++GF
Sbjct: 18 LLRRHKESNPDFFLIRSKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGF 77
Query: 151 AFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVS 207
F++FK + K L+ + K++ ++ + A A QG+ +K++V
Sbjct: 78 GFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA-------------KALQGKEPPKKVFVG 124
Query: 208 NVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
+ + +E+++ +F FGEIE + D T + RGF Y E +K LE
Sbjct: 125 GLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLE 178
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL WDT+++ L F GE+ +C + +D TG+++GF FI+FK + K L
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNV-PRDVEKEKLRGFFERFG 226
+ +++ R+ + A P +KI+V + P +EK+R +F FG
Sbjct: 130 KEHRLDGRVIDPKKAMAMKKDP-----------VKKIFVGGLNPESPTEEKIREYFGEFG 178
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
EIE + D K RGF +K E +K LE
Sbjct: 179 EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ +SL F GEI EC ++ D T +++GF F+ F + K L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
P +++++ ++A + Q +KI+V + + E ++ +FE+FG+
Sbjct: 82 PHHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK 135
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+E + FD TT + RGF ++ + K E ++C+KA
Sbjct: 136 VEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL +T E + F G++E+ L+ DK T + +GF F+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + + G +KI+V + D E+ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + D +E+++ +F
Sbjct: 91 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGA 137
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 138 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 81 AASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 140
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 141 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 192
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 27 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 86
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 87 VLELKEHKLDGKLIDPKRA 105
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 168 PQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF 225
+ K++ ++ + A G P +K++V + D +E+++ +F F
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPP------------KKVFVGGLSPDTSEEQIKEYFGAF 137
Query: 226 GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
GEIE + D T + RGF Y E +K LE
Sbjct: 138 GEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 83 AAAATKIPLLHDHILETADRDVSQ----------RKIFVHGLGWDTTQESLLSAFGGSGE 132
AA+ K+ L +H L+ D + +K+FV GL DT++E + FG GE
Sbjct: 80 AASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE 139
Query: 133 IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
IE +L +D T + +GF FI + + K L++ ++ + C++ P
Sbjct: 140 IENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS--GKCEIKVAQP 191
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q + K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 26 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 85
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 86 VLELKEHKLDGKLIDPKRA 104
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL S F G + +C ++ D T +++GF F+ + T + A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
KV+ R+ + A ++ A +KI+V + D E+ LR +FE++G
Sbjct: 74 ARPHKVDGRVVEPKRAVSRED----SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+IE I D +GK RGFA + K + + GH + +KA
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G + +C ++ D T +++GF F+ + + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 167 NPQRKVNNRMASCQLA-----SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
KV+ R+ + A SV P A +KI+V + D E+ LR +
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKP---------GAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
FE++G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+FV GL W+TTQE+L F G+I +C ++ + +G+++GF F+ F L+N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
++ R + P P ++ G K+++ +P +V + LR FF R+G+
Sbjct: 68 GPHTLDGRTIDPK-----PCNPRTLQK-PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGK 121
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRTSSN 287
+ I +D KSRGF ++ E G Q++ +KA R S
Sbjct: 122 VTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP---RDGSG 178
Query: 288 SSSSNN 293
+SNN
Sbjct: 179 GQNSNN 184
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQ+ L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ N + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAI-NTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + + +E+++ +F
Sbjct: 87 NEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPETTEEQIKQYFGG 133
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 134 FGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE 170
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL +TT+E + FGG GEIE +L ID T + +GF F+ + + K L+
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 167 NPQRKVNNRMASCQLASVGP 186
+ ++ C++ + P
Sbjct: 171 SRFHQIG--TGKCEIKAAQP 188
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q E K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 23 QDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDK 82
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 83 VLETNEHKLDGKLIDPKRA 101
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDT+++ L GE+ +C + D VTG+++GF F++FK + K L+
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKLRGFFER 224
+ K++ ++ + A A +G+ +K++V + + +E+++ +F
Sbjct: 87 KEHKLDGKLIDPKRAK-------------ALKGKEPPKKVFVGGLSPETTEEQIKQYFGG 133
Query: 225 FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
FGEIE + D T + RGF Y E +K LE
Sbjct: 134 FGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLE 170
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+K+FV GL +TT+E + FGG GEIE +L +D T + +GF F+ + + K L+
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 167 NPQRKVNNRMASCQLASVGP 186
+ ++ C++ P
Sbjct: 171 SRFHQIG--TGKCEIKVAQP 188
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258
Q E K+++ + D K+ L + RFGE+ I D TG+SRGF ++K K
Sbjct: 23 QDEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDK 82
Query: 259 ALEEPQKMFEGHQLQCQKA 277
LE + +G + ++A
Sbjct: 83 VLETKEHKLDGKLIDPKRA 101
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 94 DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFI 153
DH+ E D+ + + V+ L + TQE L S F GE+E KL+ DKV G + G+ F+
Sbjct: 7 DHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 154 VFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV 213
+ T K A +A+ + + + +++ P+ +K+ +Y+S +PR +
Sbjct: 67 NYVTAKDAERAISTLN-GLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTM 117
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQ 271
++ + F RFG I + D TTG SRG A + R EE F GH+
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD----KRSEAEEAITSFNGHK 171
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IF++ LG D + L FG G + K++ D T K KGF F+ + A A+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 25/192 (13%)
Query: 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF------- 155
D Q K+FV G+ W+T ++ L F GE+ + ++ DK+TG+ +GF F++F
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 156 ---------KTRKAAVK-ALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIY 205
TR+ VK A+ +++V+ R + + G A +KI+
Sbjct: 62 RVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSR--------SSGGDAYNKTKKIF 113
Query: 206 VSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQK 265
V +P + E+ R +FE +G + I +D T + RGF + + + L +
Sbjct: 114 VGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFH 173
Query: 266 MFEGHQLQCQKA 277
G Q++ ++A
Sbjct: 174 DLSGKQVEVKRA 185
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 9/186 (4%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
R Q +F+ L ++L F G I CK+ D+ G +KG+ F+ ++T +AA
Sbjct: 144 RKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAA 202
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVEKEKL 218
+A+K+ VN + + + VG P Q + + IYV N+ +V ++
Sbjct: 203 SQAIKH----VNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEF 258
Query: 219 RGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-PQKMFEGHQLQCQKA 277
R FE++G++ + + D TGKSRGF + + E A KA++E +K F G L +A
Sbjct: 259 RTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRA 318
Query: 278 AEGKNR 283
+ R
Sbjct: 319 QKKHER 324
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 17/144 (11%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I+V + + T + + F G++ L D+ TGK++GF F+ F + + A KA++
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQ-- 301
Query: 169 QRKVNNRMASCQLASVGPTGPG------VKEQGAAAQGER-------KIYVSNVPRDVEK 215
++N + Q VG +++ AA+ E+ +Y+ N+ +V+
Sbjct: 302 --ELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 216 EKLRGFFERFGEIETGPIGFDITT 239
EKLR F FG I + + D T
Sbjct: 360 EKLRQLFSEFGPITSAKVMRDSIT 383
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
++V L T+ L F G + ++ D VT ++ G+A++ + T KAL+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE-- 120
Query: 169 QRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG 226
++N + + + P +++ G QG +++ N+ ++ + L F FG
Sbjct: 121 --ELNYTLIKGRPCRIMWSQRDPALRKTG---QG--NVFIKNLDVAIDNKALHDTFAAFG 173
Query: 227 EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE-------PQKMFEGHQL 272
I + + D G S+G+ Y+T E A +A++ +K++ GH +
Sbjct: 174 NILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 34/89 (38%)
Query: 174 NRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPI 233
N AS + GP Q +YV + V + L F + G + + +
Sbjct: 33 NVGASFTGEEIDTAGPTPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRV 92
Query: 234 GFDITTGKSRGFAIFVYKTVEGARKALEE 262
D T +S G+A Y T KALEE
Sbjct: 93 CRDAVTRRSLGYAYVNYNTTADGEKALEE 121
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161
RD RK+FV GL W+TT++ L FG GEIE + D TG+++GFAFIVF +A
Sbjct: 52 RD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI 110
Query: 162 VKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGF 221
K + +N++ V P ++ A G KI+V + ++ E+++ +
Sbjct: 111 DKVSAADEHIINSK-------KVDP------KKAKARHG--KIFVGGLTTEISDEEIKTY 155
Query: 222 FERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278
F +FG I + FD + +GF + + + L+ P++ G ++ ++A
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRAT 212
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 85 AATKIPLLHDHILETADRD-----VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLV 139
A K+ +HI+ + D KIFV GL + + E + + FG G I E ++
Sbjct: 109 AIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMP 168
Query: 140 IDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGP 186
DK + KGF FI F + + LK P++K+ + + A+ P
Sbjct: 169 FDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP 215
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 183 SVGPTGPGVKEQGAAA---QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239
+ G T Q AA+ +RK++V + + +++LR F ++GEIE+ + D T
Sbjct: 34 AAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQT 93
Query: 240 GKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
G+SRGFA V+ E K + + ++ +KA
Sbjct: 94 GRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA 131
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT ESL F G + +C ++ D + +++GF F+ + + A+
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + ++ G +KI+V + D E++ LR +F
Sbjct: 74 ARPHKVDGRVVEPKRA--------VSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYF 125
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E++G+IE I D +GK RGFA ++ + K + + H Q +KA
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKA 180
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL W T+ ESL FG G+I E ++ D T +++GF F+ F + K L
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
+++ + ++A P + + +KI+V + E ++ +FE+FG
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKMVTR------TKKIFVGGLSAPTTLEDVKSYFEQFGP 143
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
IE + FD T + RGF +++ + K E ++C+KA
Sbjct: 144 IEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKA 193
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
+KIFV GL TT E + S F G IE+ L+ DK T + +GF F+ F++ K +
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 167 NPQRKVNNRMASCQLA 182
++NN+M C+ A
Sbjct: 178 IHFHEINNKMVECKKA 193
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQG--AAAQGERKIYVSNVPRDV 213
+ A+ ++ R+ + A +E G A +K++V + D
Sbjct: 70 SSMAEVDAAMAARPHSIDGRVVEPKRAVA------REESGKPGAHVTVKKLFVGGIKEDT 123
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
E+ LR +FE +G+I+T I D +GK RGF + + K + + GH +
Sbjct: 124 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAE 183
Query: 274 CQKA 277
+KA
Sbjct: 184 VRKA 187
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 11/170 (6%)
Query: 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167
K+F+ GL WDTT+++L FG G + + K++ D TG+++GF F+ F+ + ++V +
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFE-KPSSVDEVVK 218
Query: 168 PQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227
Q ++ ++ + A EQ KI+V + DV ++ FF ++G
Sbjct: 219 TQHILDGKVIDPKRAIP------RDEQDKTG----KIFVGGIGPDVRPKEFEEFFSQWGT 268
Query: 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
I + D TG+SRGF Y + + + + F+ +++ ++A
Sbjct: 269 IIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRA 318
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G++ +C ++ D T +++GF F+ + + ++
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + +A G +KI+V + D E+ LR +
Sbjct: 87 ARPHKVDGRVVEPKRA--------VSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYS 138
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E +G+IET + D +GK RGFA + + K + + GH + +KA
Sbjct: 139 ESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 193
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 9/165 (5%)
Query: 97 LETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFK 156
+E+++ + S+ + V+ L + TQE L S FG GEIE CKLV DK+TG++ G+ F+ +
Sbjct: 57 VESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 116
Query: 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKE 216
K A KA+ N + + + +++ P+ +++ +YVS +P+ + ++
Sbjct: 117 DPKDAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQK 167
Query: 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
+L F ++G I T I D TG SRG + A +A++
Sbjct: 168 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 212
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 74/202 (36%), Gaps = 46/202 (22%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
+ ++V GL TQ+ L F G I ++++D+VTG ++G FI F R A +
Sbjct: 150 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 209
Query: 164 ALK--------------------NPQRKVNNRMASCQLASVGPTGPGVKEQ--------- 194
A+K NP +KVN+ + S S PG Q
Sbjct: 210 AIKGLNGQKPPGATEPITVKFANNPSQKVNHTILSQLYQSPNRRYPGPLAQQAQRFSRFS 269
Query: 195 ----------------GAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDIT 238
G A G I+V N+ D ++ L F FG + + D
Sbjct: 270 PMTIDGMTSLAGINFPGHAGTG-WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN 328
Query: 239 TGKSRGFAIFVYKTVEGARKAL 260
T K +GF + A A+
Sbjct: 329 TNKCKGFGFVTMTNYDEAAMAI 350
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 10/174 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F A+
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGA---AAQGERKIYVSNVPRDVEKEKLRGFFE 223
++ R+ V P +E+ A A +K++V + D E+ LR +FE
Sbjct: 69 ARPHTIDGRV-------VEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFE 121
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+G+IE+ I D +GK RGF + + K + + GH + +KA
Sbjct: 122 EYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKA 175
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
V+ +K+FV G+ DT + L F G+IE +++ DK +GK +GF F+ F K
Sbjct: 97 VTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDK 156
Query: 164 ALKNPQRKVNNRMASCQLA 182
+ +N A + A
Sbjct: 157 IVLQKYHTINGHNAEVRKA 175
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 10/174 (5%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT+ESL + + G + +C ++ D + +++GF F+ F A+
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGA---AAQGERKIYVSNVPRDVEKEKLRGFFE 223
++ R+ V P +E+ A A +K++V + D E+ LR +FE
Sbjct: 69 TRPHTIDGRV-------VEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFE 121
Query: 224 RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
+G+I++ I D +GK RGFA + + K + + GH + +KA
Sbjct: 122 EYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVK 163
V+ +K+FV G+ DT + L F G+I+ +++ DK +GK +GFAF+ F K
Sbjct: 97 VTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDK 156
Query: 164 ALKNPQRKVNNRMASCQLA 182
+ +N A + A
Sbjct: 157 IVLQKYHTINGHNAEVRKA 175
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQG--AAAQGERKIYVSNVPRDV 213
+ A+ ++ R+ + A +E G A +K++V + D
Sbjct: 70 SSMAEVDAAMAARPHSIDGRVVEPKRAVA------REESGKPGAHVTVKKLFVGGIKEDT 123
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
E+ LR +FE +G+I+T I D +GK RGF + + K + + GH +
Sbjct: 124 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 183
Query: 274 CQKA 277
+KA
Sbjct: 184 VRKA 187
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQG--AAAQGERKIYVSNVPRDV 213
+ A+ ++ R+ + A +E G A +K++V + D
Sbjct: 70 SSMAEVDAAMAARPHSIDGRVVEPKRAVA------REESGKPGAHVTVKKLFVGGIKEDT 123
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
E+ LR +FE +G+I+T I D +GK RGF + + K + + GH +
Sbjct: 124 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 183
Query: 274 CQKA 277
+KA
Sbjct: 184 VRKA 187
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166
RK+F+ GL ++TT +SL F G++ +C ++ D T +++GF F+ + + ++
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86
Query: 167 NPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE----RKIYVSNVPRDVEKEKLRGFF 222
KV+ R+ + A V + +A G +KI+V + D E+ LR +F
Sbjct: 87 ARPHKVDGRVVEPKRA--------VSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYF 138
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277
E +G+IET + D +GK RGFA + + K + + H + +KA
Sbjct: 139 EGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVKKA 193
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 97 LETADRDVSQ-RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVF 155
LE R+ Q RK+F+ GL ++TT+ESL + + G++ +C ++ D + +++GF F+ F
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69
Query: 156 KTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQG--AAAQGERKIYVSNVPRDV 213
+ A+ ++ R+ + A +E G A +K++V + D
Sbjct: 70 SSMAEVDAAMAARPHSIDGRVVEPKRAVA------REESGKPGAHVTVKKLFVGGIKEDT 123
Query: 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273
E+ LR +FE +G+I+T I D +GK RGF + + K + GH +
Sbjct: 124 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAE 183
Query: 274 CQKA 277
+KA
Sbjct: 184 VRKA 187
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 10/190 (5%)
Query: 98 ETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT 157
+ A R Q +F+ L ++L F G I CK+ D+ G +KG+ F+ ++T
Sbjct: 144 DPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYET 202
Query: 158 RKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGE---RKIYVSNVPRDVE 214
+AA +A+K+ VNN + + + VG P Q + + IYV N+ +
Sbjct: 203 DEAAAQAIKH----VNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEAT 258
Query: 215 KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273
E+ R F ++G++ + + D + GKSRGF + T E A KA+EE K F G L
Sbjct: 259 DEEFRDLFAKYGDVTSSSLARD-SEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLY 317
Query: 274 CQKAAEGKNR 283
+A + R
Sbjct: 318 VGRAQKKHER 327
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 127/363 (34%), Gaps = 93/363 (25%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168
I+V + + T E F G++ L D GK++GF F+ F T + A KA++
Sbjct: 248 IYVKNISLEATDEEFRDLFAKYGDVTSSSLARDS-EGKSRGFGFVNFTTHECAAKAVE-- 304
Query: 169 QRKVNNRMASCQLASVGPTGPG------VKEQGAAAQGER-------KIYVSNVPRDVEK 215
++N + Q VG +++ AA+ E+ +Y+ N+ D++
Sbjct: 305 --ELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDD 362
Query: 216 EKLRGFFERFGEIETGPIGFDITT------------------------------------ 239
+KLR F +G I + + D T
Sbjct: 363 DKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKT 422
Query: 240 --------GKSRGFAIFVYKTVEGARKALEE-PQKMFEGHQLQCQKAAEGKNRTSSNSSS 290
GKS+GF + + A KA+ E Q+M EG L A R
Sbjct: 423 EKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVR------- 475
Query: 291 SNNQAQMMIQKQQQPMLQGQQQGQGNEQEQVLAAMAAAQNLALFGQHPGMHPLYGGFLVN 350
NQ + IQ + Q +Q G Q+ + + A GQ P P G +
Sbjct: 476 -KNQLEASIQARNQLRMQQAAAQAGLPQQYMQTPVYYAP-----GQQPNFMPPGGRGMPF 529
Query: 351 P--GLINPMVAGALHQGAIPASNVGAMAGSS-------VLGSFGPGAAQGLQQQQHVYPN 401
P GL P V G P + G G LG F PGA + PN
Sbjct: 530 PQGGLGMPAVQGGRPGQFPPYAQQGGRGGMPPQQLPIYPLGQFPPGA--------YPQPN 581
Query: 402 APQ 404
PQ
Sbjct: 582 NPQ 584
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKA 164
S ++V L T+ L F G + ++ D +T ++ G+A++ + + KA
Sbjct: 63 SSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKA 122
Query: 165 LKNPQRKVNNRMASCQLASV--GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFF 222
L+ ++N + + + P +++ G QG +++ N+ ++ + L F
Sbjct: 123 LE----ELNYTLIKGRPCRIMWSQRDPALRKTG---QG--NVFIKNLDVAIDNKALHDTF 173
Query: 223 ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMF 267
FG I + + D G S+G+ Y+T E A +A++ M
Sbjct: 174 AAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHVNNML 217
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 172 VNNRMASCQLASVGPTGPGVKEQGAAA--QGERKIYVSNVPRDVEKEKLRGFFERFGEIE 229
+N +A + + P G AA Q +YV + V + L F + G +
Sbjct: 33 INTNVAPGEYQTADPDTAGPTPSSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVA 92
Query: 230 TGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262
+ + D T +S G+A Y + KALEE
Sbjct: 93 SIRVCRDTITRRSLGYAYVNYNSTSDGEKALEE 125
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 9/162 (5%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 39 ATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 98
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 99 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELE 149
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
F ++G I T I D TG SRG + A +A++
Sbjct: 150 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IFV+ L D+ + L FG G + K++ D T K KGF F+ A A+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 9/162 (5%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 44 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 103
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 104 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELE 154
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
F ++G I T I D TG SRG + A +A++
Sbjct: 155 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IFV+ L D+ + L FG G + K++ D T K KGF F+ A A+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 9/162 (5%)
Query: 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159
A D S+ + V+ L + TQE S FG GEIE CKLV DK+TG++ G+ F+ + K
Sbjct: 32 AATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 160 AAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219
A KA+ N + + + +++ P+ +++ +YVS +P+ + +++L
Sbjct: 92 DAEKAI-NTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELE 142
Query: 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261
F ++G I T I D TG SRG + A +A++
Sbjct: 143 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165
IFV+ L D+ + L FG G + K++ D T K KGF F+ A A+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,805,663
Number of Sequences: 539616
Number of extensions: 7180276
Number of successful extensions: 55428
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 471
Number of HSP's that attempted gapping in prelim test: 43719
Number of HSP's gapped (non-prelim): 8062
length of query: 446
length of database: 191,569,459
effective HSP length: 121
effective length of query: 325
effective length of database: 126,275,923
effective search space: 41039674975
effective search space used: 41039674975
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)