Query 013270
Match_columns 446
No_of_seqs 384 out of 3308
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 02:08:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 7.3E-35 1.6E-39 280.3 25.8 171 102-282 103-277 (346)
2 KOG0148 Apoptosis-promoting RN 100.0 4E-34 8.7E-39 250.8 17.8 174 103-282 59-240 (321)
3 TIGR01645 half-pint poly-U bin 100.0 1.9E-32 4.2E-37 276.4 28.4 178 104-281 105-285 (612)
4 KOG0117 Heterogeneous nuclear 100.0 4.6E-31 1E-35 246.5 24.7 177 102-286 79-337 (506)
5 KOG0144 RNA-binding protein CU 100.0 6.4E-33 1.4E-37 257.7 11.6 173 104-286 32-212 (510)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.7E-30 3.7E-35 255.6 20.7 168 105-282 2-173 (352)
7 TIGR01628 PABP-1234 polyadenyl 100.0 1.1E-29 2.4E-34 264.5 27.4 179 103-283 175-367 (562)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6E-30 1.3E-34 251.8 21.5 179 104-282 87-351 (352)
9 TIGR01622 SF-CC1 splicing fact 100.0 1E-29 2.2E-34 258.7 21.1 179 102-280 85-266 (457)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 3.4E-28 7.4E-33 245.5 24.9 170 105-283 57-310 (578)
11 TIGR01628 PABP-1234 polyadenyl 100.0 5.1E-29 1.1E-33 259.4 18.4 167 108-283 2-170 (562)
12 KOG0145 RNA-binding protein EL 100.0 3.1E-28 6.6E-33 212.5 14.3 168 103-280 38-209 (360)
13 KOG0127 Nucleolar protein fibr 99.9 3.1E-27 6.6E-32 225.8 15.6 176 106-282 5-198 (678)
14 KOG0131 Splicing factor 3b, su 99.9 1.1E-27 2.4E-32 198.9 10.9 171 105-284 8-181 (203)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.5E-26 1.2E-30 234.5 20.3 174 102-281 171-376 (509)
16 KOG0127 Nucleolar protein fibr 99.9 3.6E-26 7.7E-31 218.5 16.0 175 106-281 117-379 (678)
17 KOG0145 RNA-binding protein EL 99.9 2.3E-26 5E-31 200.8 12.6 218 63-280 55-358 (360)
18 KOG4205 RNA-binding protein mu 99.9 1.4E-25 3.1E-30 209.3 17.0 178 105-286 5-182 (311)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.4E-25 5.2E-30 226.4 19.9 166 106-281 2-175 (481)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.3E-25 7.1E-30 228.7 19.7 176 105-280 294-502 (509)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.9E-25 8.5E-30 224.8 19.6 170 104-280 273-480 (481)
22 KOG0124 Polypyrimidine tract-b 99.9 4.8E-26 1.1E-30 207.5 10.2 179 105-283 112-293 (544)
23 KOG0109 RNA-binding protein LA 99.9 7.4E-25 1.6E-29 194.6 9.9 148 107-282 3-152 (346)
24 KOG0146 RNA-binding protein ET 99.9 2.2E-24 4.7E-29 189.2 10.4 183 101-284 14-369 (371)
25 KOG0110 RNA-binding protein (R 99.9 4.2E-24 9.1E-29 210.9 12.1 175 106-281 515-694 (725)
26 KOG0123 Polyadenylate-binding 99.9 2.1E-23 4.6E-28 201.9 15.6 156 107-286 2-159 (369)
27 KOG0144 RNA-binding protein CU 99.9 4.7E-24 1E-28 198.9 10.3 178 104-282 122-506 (510)
28 TIGR01622 SF-CC1 splicing fact 99.9 7.1E-23 1.5E-27 208.5 19.9 171 106-280 186-448 (457)
29 KOG4211 Splicing factor hnRNP- 99.9 1.2E-21 2.6E-26 186.4 24.5 176 104-283 8-185 (510)
30 KOG0147 Transcriptional coacti 99.9 7.4E-24 1.6E-28 203.9 5.6 184 100-283 173-361 (549)
31 KOG0148 Apoptosis-promoting RN 99.9 6.1E-23 1.3E-27 180.7 10.6 142 103-283 3-145 (321)
32 KOG0123 Polyadenylate-binding 99.9 3.4E-21 7.3E-26 186.6 13.0 170 106-281 76-247 (369)
33 TIGR01645 half-pint poly-U bin 99.8 1.2E-19 2.5E-24 184.0 19.4 79 105-183 203-282 (612)
34 KOG0105 Alternative splicing f 99.8 9.1E-18 2E-22 140.0 12.7 151 104-264 4-171 (241)
35 PLN03134 glycine-rich RNA-bind 99.8 1.2E-17 2.6E-22 141.1 12.5 84 198-281 31-115 (144)
36 KOG0147 Transcriptional coacti 99.7 1.2E-17 2.7E-22 161.3 12.3 169 107-280 279-528 (549)
37 KOG1548 Transcription elongati 99.7 1E-16 2.2E-21 146.4 16.7 172 105-281 133-353 (382)
38 KOG4212 RNA-binding protein hn 99.7 6.4E-17 1.4E-21 151.4 14.3 172 105-278 43-292 (608)
39 PLN03134 glycine-rich RNA-bind 99.7 3.7E-17 7.9E-22 138.2 10.7 83 105-187 33-116 (144)
40 KOG4206 Spliceosomal protein s 99.7 3.2E-16 7E-21 136.2 14.9 165 106-278 9-220 (221)
41 KOG0149 Predicted RNA-binding 99.7 4.5E-17 9.7E-22 141.7 8.2 84 198-281 9-92 (247)
42 KOG0149 Predicted RNA-binding 99.7 4.2E-17 9.2E-22 141.8 7.9 83 103-185 9-91 (247)
43 KOG0110 RNA-binding protein (R 99.6 1.6E-15 3.4E-20 150.7 12.8 171 102-278 381-596 (725)
44 KOG0124 Polypyrimidine tract-b 99.6 6.8E-15 1.5E-19 135.0 13.9 176 103-278 207-533 (544)
45 TIGR01659 sex-lethal sex-letha 99.6 1.8E-15 3.9E-20 146.1 10.1 85 197-281 103-188 (346)
46 COG0724 RNA-binding proteins ( 99.6 1.2E-14 2.6E-19 137.7 13.0 157 106-262 115-286 (306)
47 KOG1457 RNA binding protein (c 99.6 3.9E-14 8.5E-19 122.0 13.6 158 103-264 31-269 (284)
48 KOG0106 Alternative splicing f 99.6 3.3E-15 7.2E-20 131.4 7.3 155 107-277 2-168 (216)
49 PF00076 RRM_1: RNA recognitio 99.6 6.7E-15 1.4E-19 108.9 7.3 69 109-178 1-70 (70)
50 PF00076 RRM_1: RNA recognitio 99.6 8.6E-15 1.9E-19 108.3 7.9 69 204-273 1-70 (70)
51 KOG0122 Translation initiation 99.6 1.2E-14 2.6E-19 127.0 9.4 83 198-280 186-269 (270)
52 KOG0122 Translation initiation 99.6 1.3E-14 2.8E-19 126.9 8.6 80 105-184 188-268 (270)
53 KOG0120 Splicing factor U2AF, 99.5 2.3E-14 5E-19 140.7 10.5 179 103-281 286-493 (500)
54 KOG0121 Nuclear cap-binding pr 99.5 1.2E-14 2.5E-19 114.4 6.4 80 198-277 33-113 (153)
55 TIGR01648 hnRNP-R-Q heterogene 99.5 5.4E-14 1.2E-18 142.9 11.7 116 157-278 18-136 (578)
56 KOG0117 Heterogeneous nuclear 99.5 9.4E-14 2E-18 131.1 11.9 121 157-281 43-165 (506)
57 PF14259 RRM_6: RNA recognitio 99.5 4.1E-14 9E-19 104.7 7.3 69 109-178 1-70 (70)
58 PF14259 RRM_6: RNA recognitio 99.5 5.7E-14 1.2E-18 104.0 8.0 69 204-273 1-70 (70)
59 KOG0121 Nuclear cap-binding pr 99.5 2.2E-14 4.7E-19 112.8 5.5 82 102-183 32-114 (153)
60 KOG0125 Ataxin 2-binding prote 99.5 4.1E-14 8.9E-19 128.6 8.0 82 198-281 93-175 (376)
61 PLN03120 nucleic acid binding 99.5 7.1E-14 1.5E-18 126.3 9.5 77 201-280 4-80 (260)
62 PLN03120 nucleic acid binding 99.5 9.6E-14 2.1E-18 125.4 9.9 78 106-186 4-81 (260)
63 KOG0126 Predicted RNA-binding 99.5 5.4E-15 1.2E-19 123.3 1.1 86 103-188 32-118 (219)
64 KOG0113 U1 small nuclear ribon 99.5 1E-13 2.3E-18 124.5 9.3 83 198-280 98-181 (335)
65 KOG4207 Predicted splicing fac 99.5 3.8E-14 8.3E-19 120.6 5.7 85 198-282 10-95 (256)
66 KOG0126 Predicted RNA-binding 99.5 4.4E-15 9.6E-20 123.8 -0.1 84 198-281 32-116 (219)
67 KOG0125 Ataxin 2-binding prote 99.5 1E-13 2.2E-18 126.1 8.0 84 100-185 90-174 (376)
68 KOG0111 Cyclophilin-type pepti 99.5 5.3E-14 1.1E-18 120.8 5.8 95 198-292 7-102 (298)
69 KOG4210 Nuclear localization s 99.5 5.7E-14 1.2E-18 131.4 6.3 179 104-283 86-267 (285)
70 KOG4212 RNA-binding protein hn 99.5 1.2E-12 2.7E-17 123.0 15.0 72 201-277 536-608 (608)
71 KOG0113 U1 small nuclear ribon 99.5 1.9E-13 4E-18 122.9 9.1 80 103-182 98-178 (335)
72 PLN03213 repressor of silencin 99.4 2.4E-13 5.2E-18 129.5 8.5 79 198-280 7-88 (759)
73 KOG0129 Predicted RNA-binding 99.4 1.2E-12 2.7E-17 126.2 12.8 175 103-278 256-452 (520)
74 KOG0107 Alternative splicing f 99.4 3.9E-13 8.4E-18 111.8 7.0 78 199-281 8-86 (195)
75 KOG0130 RNA-binding protein RB 99.4 3.7E-13 8.1E-18 106.8 6.3 86 197-282 68-154 (170)
76 KOG0107 Alternative splicing f 99.4 4.9E-13 1.1E-17 111.2 7.0 78 105-187 9-87 (195)
77 KOG1190 Polypyrimidine tract-b 99.4 6.4E-12 1.4E-16 117.5 14.9 165 106-279 297-490 (492)
78 PLN03213 repressor of silencin 99.4 6.8E-13 1.5E-17 126.5 8.5 77 103-183 7-86 (759)
79 KOG0131 Splicing factor 3b, su 99.4 4.6E-13 1E-17 112.1 6.3 82 198-279 6-88 (203)
80 PLN03121 nucleic acid binding 99.4 1.4E-12 2.9E-17 116.0 9.6 77 200-279 4-80 (243)
81 PLN03121 nucleic acid binding 99.4 1.3E-12 2.8E-17 116.2 9.2 77 105-184 4-80 (243)
82 KOG0114 Predicted RNA-binding 99.4 1.6E-12 3.4E-17 98.5 7.9 81 198-281 15-96 (124)
83 KOG1365 RNA-binding protein Fu 99.4 1.8E-12 3.9E-17 120.1 10.0 174 106-281 161-363 (508)
84 KOG4211 Splicing factor hnRNP- 99.4 1.1E-11 2.5E-16 118.8 15.7 169 105-276 102-354 (510)
85 smart00362 RRM_2 RNA recogniti 99.4 2.2E-12 4.8E-17 95.2 8.4 71 203-275 1-72 (72)
86 smart00360 RRM RNA recognition 99.4 2.6E-12 5.7E-17 94.4 8.4 70 206-275 1-71 (71)
87 KOG0108 mRNA cleavage and poly 99.4 1.3E-12 2.8E-17 127.9 7.9 81 202-282 19-100 (435)
88 KOG4207 Predicted splicing fac 99.4 7.3E-13 1.6E-17 112.9 5.1 82 105-186 12-94 (256)
89 KOG0146 RNA-binding protein ET 99.4 6E-12 1.3E-16 111.4 11.0 101 175-286 3-107 (371)
90 smart00362 RRM_2 RNA recogniti 99.3 3.5E-12 7.5E-17 94.1 7.8 70 108-179 1-71 (72)
91 KOG1190 Polypyrimidine tract-b 99.3 8.4E-12 1.8E-16 116.7 11.0 167 104-281 26-229 (492)
92 KOG0132 RNA polymerase II C-te 99.3 1.2E-11 2.6E-16 124.2 12.2 113 101-224 416-529 (894)
93 KOG0130 RNA-binding protein RB 99.3 5.2E-12 1.1E-16 100.4 7.4 86 102-187 68-154 (170)
94 smart00360 RRM RNA recognition 99.3 6.8E-12 1.5E-16 92.2 7.3 69 111-179 1-70 (71)
95 KOG0114 Predicted RNA-binding 99.3 9.1E-12 2E-16 94.4 7.8 76 105-183 17-93 (124)
96 KOG0108 mRNA cleavage and poly 99.3 4.5E-12 9.8E-17 124.2 7.6 80 107-186 19-99 (435)
97 COG0724 RNA-binding proteins ( 99.3 1.7E-11 3.6E-16 116.0 11.2 79 201-279 115-194 (306)
98 cd00590 RRM RRM (RNA recogniti 99.3 2.1E-11 4.5E-16 90.4 8.9 73 203-276 1-74 (74)
99 KOG0120 Splicing factor U2AF, 99.3 1.3E-11 2.8E-16 121.5 9.8 178 103-286 172-375 (500)
100 KOG1456 Heterogeneous nuclear 99.3 7.6E-10 1.6E-14 102.6 19.9 170 103-286 28-205 (494)
101 KOG0128 RNA-binding protein SA 99.3 1.6E-12 3.6E-17 131.9 2.2 150 104-280 665-815 (881)
102 KOG0111 Cyclophilin-type pepti 99.3 4E-12 8.7E-17 109.3 4.2 81 105-185 9-90 (298)
103 smart00361 RRM_1 RNA recogniti 99.2 2.2E-11 4.9E-16 89.8 7.4 61 215-275 2-70 (70)
104 cd00590 RRM RRM (RNA recogniti 99.2 3.8E-11 8.2E-16 89.0 8.3 72 108-180 1-73 (74)
105 KOG4661 Hsp27-ERE-TATA-binding 99.2 4.1E-11 9E-16 116.2 10.5 86 101-186 400-486 (940)
106 KOG0415 Predicted peptidyl pro 99.2 2.2E-11 4.7E-16 111.9 8.0 112 71-183 201-317 (479)
107 PF13893 RRM_5: RNA recognitio 99.2 5.4E-11 1.2E-15 83.7 6.9 55 218-277 1-56 (56)
108 KOG4205 RNA-binding protein mu 99.1 3.3E-11 7.1E-16 113.2 4.7 85 200-284 5-89 (311)
109 KOG0415 Predicted peptidyl pro 99.1 4.4E-11 9.5E-16 109.9 5.3 83 198-280 236-319 (479)
110 KOG0105 Alternative splicing f 99.1 9.6E-11 2.1E-15 98.3 6.3 80 199-281 4-84 (241)
111 KOG4454 RNA binding protein (R 99.1 2.4E-11 5.1E-16 104.7 2.6 134 105-264 8-146 (267)
112 KOG0226 RNA-binding proteins [ 99.1 6E-11 1.3E-15 104.6 4.8 173 104-281 94-271 (290)
113 smart00361 RRM_1 RNA recogniti 99.1 1.7E-10 3.6E-15 85.1 6.4 60 120-179 2-69 (70)
114 KOG4208 Nucleolar RNA-binding 99.0 5.9E-10 1.3E-14 95.8 7.7 83 198-280 46-130 (214)
115 KOG0109 RNA-binding protein LA 99.0 3.1E-10 6.7E-15 102.0 5.8 72 202-281 3-75 (346)
116 KOG4206 Spliceosomal protein s 99.0 6.9E-10 1.5E-14 97.0 7.3 83 198-283 6-93 (221)
117 KOG4208 Nucleolar RNA-binding 99.0 8.4E-10 1.8E-14 94.8 7.2 81 103-183 46-128 (214)
118 KOG1365 RNA-binding protein Fu 99.0 1.5E-09 3.3E-14 100.9 9.0 175 103-278 57-241 (508)
119 PF13893 RRM_5: RNA recognitio 99.0 8.1E-10 1.7E-14 77.6 5.5 55 123-182 1-56 (56)
120 KOG0153 Predicted RNA-binding 99.0 1.2E-09 2.6E-14 100.7 7.7 78 196-279 223-302 (377)
121 KOG4661 Hsp27-ERE-TATA-binding 98.9 3.7E-09 8.1E-14 102.9 7.9 82 199-280 403-485 (940)
122 KOG0132 RNA polymerase II C-te 98.9 3.5E-09 7.6E-14 106.8 7.3 80 199-284 419-499 (894)
123 KOG1456 Heterogeneous nuclear 98.9 6.3E-08 1.4E-12 90.1 14.9 171 103-280 284-491 (494)
124 KOG0112 Large RNA-binding prot 98.8 2E-09 4.3E-14 110.3 3.4 163 100-281 366-532 (975)
125 KOG0153 Predicted RNA-binding 98.8 7.6E-09 1.6E-13 95.5 6.6 77 102-184 224-302 (377)
126 KOG0533 RRM motif-containing p 98.7 4.5E-08 9.6E-13 88.6 7.7 83 198-281 80-163 (243)
127 KOG0533 RRM motif-containing p 98.7 5.9E-08 1.3E-12 87.8 7.4 82 102-184 79-161 (243)
128 KOG0226 RNA-binding proteins [ 98.6 3.6E-08 7.8E-13 87.3 4.7 80 103-182 187-267 (290)
129 KOG4307 RNA binding protein RB 98.6 7.6E-08 1.6E-12 96.1 7.4 174 104-279 309-513 (944)
130 KOG0116 RasGAP SH3 binding pro 98.6 6.7E-08 1.4E-12 94.5 6.9 78 105-182 287-364 (419)
131 KOG0116 RasGAP SH3 binding pro 98.6 1.2E-07 2.7E-12 92.7 7.8 81 201-281 288-368 (419)
132 KOG4660 Protein Mei2, essentia 98.6 7.4E-08 1.6E-12 94.5 5.8 168 100-279 69-249 (549)
133 KOG4209 Splicing factor RNPS1, 98.5 1.6E-07 3.5E-12 85.3 7.0 86 100-185 95-180 (231)
134 KOG4209 Splicing factor RNPS1, 98.5 1.6E-07 3.6E-12 85.2 6.7 83 198-281 98-181 (231)
135 KOG4849 mRNA cleavage factor I 98.5 8E-07 1.7E-11 82.1 9.9 79 199-277 78-159 (498)
136 PF04059 RRM_2: RNA recognitio 98.5 8.6E-07 1.9E-11 68.7 8.2 78 202-279 2-86 (97)
137 KOG1548 Transcription elongati 98.5 7.4E-07 1.6E-11 82.5 9.1 81 198-279 131-220 (382)
138 KOG4676 Splicing factor, argin 98.4 8.6E-08 1.9E-12 89.7 2.1 158 107-268 8-214 (479)
139 KOG4660 Protein Mei2, essentia 98.4 3E-07 6.5E-12 90.3 5.9 71 198-273 72-143 (549)
140 KOG4307 RNA binding protein RB 98.4 6.8E-07 1.5E-11 89.5 7.9 74 202-276 868-943 (944)
141 PF04059 RRM_2: RNA recognitio 98.4 1.6E-06 3.5E-11 67.2 7.6 65 107-171 2-68 (97)
142 KOG2193 IGF-II mRNA-binding pr 98.4 6.1E-08 1.3E-12 91.5 -0.4 151 107-279 2-156 (584)
143 KOG4454 RNA binding protein (R 98.3 2.7E-07 5.8E-12 80.0 2.7 78 198-277 6-84 (267)
144 KOG1457 RNA binding protein (c 98.3 4.5E-06 9.7E-11 72.8 8.9 92 198-289 31-127 (284)
145 KOG0128 RNA-binding protein SA 98.3 7.5E-08 1.6E-12 98.6 -2.5 166 104-269 569-735 (881)
146 KOG0151 Predicted splicing reg 98.2 1.9E-06 4.1E-11 86.7 6.8 82 103-184 171-256 (877)
147 KOG0106 Alternative splicing f 98.2 1.2E-06 2.6E-11 77.7 3.7 72 202-281 2-74 (216)
148 KOG0151 Predicted splicing reg 98.1 6.8E-06 1.5E-10 82.8 7.2 84 198-281 171-258 (877)
149 PF11608 Limkain-b1: Limkain b 98.1 1.4E-05 3E-10 59.0 6.7 69 106-184 2-76 (90)
150 PF08777 RRM_3: RNA binding mo 97.9 1.6E-05 3.4E-10 63.2 5.0 69 202-276 2-76 (105)
151 KOG1995 Conserved Zn-finger pr 97.9 1.1E-05 2.3E-10 75.6 3.8 85 198-282 63-156 (351)
152 KOG4849 mRNA cleavage factor I 97.7 2.9E-05 6.3E-10 72.0 3.5 78 103-180 77-157 (498)
153 KOG1995 Conserved Zn-finger pr 97.7 5.5E-05 1.2E-09 71.0 4.7 84 103-186 63-155 (351)
154 PF11608 Limkain-b1: Limkain b 97.6 0.00011 2.4E-09 54.3 5.3 69 202-280 3-77 (90)
155 COG5175 MOT2 Transcriptional r 97.5 0.00017 3.6E-09 66.8 5.5 80 104-183 112-201 (480)
156 KOG4210 Nuclear localization s 97.5 8.4E-05 1.8E-09 70.0 3.6 78 106-183 184-262 (285)
157 PF08777 RRM_3: RNA binding mo 97.5 0.00024 5.2E-09 56.4 5.5 56 107-168 2-57 (105)
158 KOG3152 TBP-binding protein, a 97.5 0.00022 4.9E-09 63.8 5.8 72 105-176 73-157 (278)
159 KOG0115 RNA-binding protein p5 97.4 0.00028 6E-09 63.2 5.6 100 161-278 7-112 (275)
160 KOG1855 Predicted RNA-binding 97.4 0.00013 2.8E-09 69.8 3.4 67 198-264 228-307 (484)
161 COG5175 MOT2 Transcriptional r 97.4 0.00032 6.9E-09 65.0 5.5 83 199-281 112-204 (480)
162 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.00073 1.6E-08 52.8 6.8 80 199-279 4-91 (100)
163 KOG1855 Predicted RNA-binding 97.3 0.00024 5.2E-09 68.0 4.0 71 101-171 226-309 (484)
164 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.0005 1.1E-08 47.2 4.5 52 202-260 2-53 (53)
165 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00053 1.1E-08 47.1 4.5 52 107-165 2-53 (53)
166 KOG1996 mRNA splicing factor [ 97.1 0.0011 2.3E-08 60.5 6.4 81 201-281 281-368 (378)
167 KOG2314 Translation initiation 97.1 0.00075 1.6E-08 66.8 5.2 76 104-180 56-139 (698)
168 KOG2314 Translation initiation 97.0 0.0017 3.6E-08 64.4 6.8 77 200-277 57-141 (698)
169 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0029 6.2E-08 49.5 6.6 77 105-182 5-89 (100)
170 KOG0129 Predicted RNA-binding 97.0 0.0016 3.4E-08 64.2 6.3 64 104-167 368-432 (520)
171 KOG2202 U2 snRNP splicing fact 96.9 0.00043 9.4E-09 62.2 1.4 65 216-281 83-149 (260)
172 KOG3152 TBP-binding protein, a 96.8 0.00063 1.4E-08 61.0 2.0 72 201-272 74-158 (278)
173 KOG2416 Acinus (induces apopto 96.7 0.0015 3.2E-08 65.2 3.5 80 198-283 441-525 (718)
174 KOG4676 Splicing factor, argin 96.5 0.0032 7E-08 59.8 4.6 78 201-278 7-87 (479)
175 KOG2193 IGF-II mRNA-binding pr 96.3 0.0031 6.8E-08 60.4 3.1 79 202-286 2-82 (584)
176 PF10309 DUF2414: Protein of u 96.2 0.027 5.9E-07 39.6 6.7 55 106-168 5-62 (62)
177 PF08952 DUF1866: Domain of un 96.1 0.019 4.1E-07 47.8 6.5 59 216-282 51-109 (146)
178 KOG2416 Acinus (induces apopto 96.0 0.0074 1.6E-07 60.4 4.5 75 102-182 440-519 (718)
179 KOG2202 U2 snRNP splicing fact 95.8 0.0035 7.6E-08 56.5 0.9 62 121-183 83-146 (260)
180 PF10309 DUF2414: Protein of u 95.7 0.052 1.1E-06 38.3 6.2 56 200-263 4-62 (62)
181 PF08675 RNA_bind: RNA binding 95.5 0.041 8.9E-07 40.9 5.5 54 107-169 10-63 (87)
182 PF08952 DUF1866: Domain of un 95.4 0.033 7.1E-07 46.4 5.4 74 104-185 25-107 (146)
183 KOG1996 mRNA splicing factor [ 95.4 0.035 7.6E-07 50.9 5.8 63 120-182 300-364 (378)
184 PF08675 RNA_bind: RNA binding 95.4 0.065 1.4E-06 39.9 6.1 58 198-264 6-63 (87)
185 PF15023 DUF4523: Protein of u 95.3 0.055 1.2E-06 44.4 6.0 73 198-277 83-159 (166)
186 KOG0115 RNA-binding protein p5 95.1 0.021 4.6E-07 51.5 3.6 62 107-169 32-93 (275)
187 KOG2591 c-Mpl binding protein, 94.9 0.074 1.6E-06 53.1 6.8 73 102-181 171-248 (684)
188 KOG2591 c-Mpl binding protein, 94.7 0.084 1.8E-06 52.7 6.8 71 198-275 172-247 (684)
189 PF10567 Nab6_mRNP_bdg: RNA-re 94.7 0.46 9.9E-06 44.1 11.0 164 100-264 9-212 (309)
190 PF15023 DUF4523: Protein of u 94.5 0.073 1.6E-06 43.7 4.9 74 103-183 83-160 (166)
191 KOG0804 Cytoplasmic Zn-finger 94.5 0.18 3.9E-06 49.3 8.2 68 105-174 73-142 (493)
192 PF07576 BRAP2: BRCA1-associat 94.3 0.36 7.7E-06 38.6 8.3 65 105-171 12-77 (110)
193 KOG2068 MOT2 transcription fac 94.1 0.057 1.2E-06 50.9 4.0 81 104-184 75-162 (327)
194 KOG0112 Large RNA-binding prot 93.9 0.078 1.7E-06 56.0 4.8 76 102-183 451-529 (975)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 93.5 0.13 2.7E-06 45.1 4.9 81 199-279 5-97 (176)
196 KOG2068 MOT2 transcription fac 93.5 0.036 7.9E-07 52.1 1.5 83 199-281 75-164 (327)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 93.3 0.15 3.2E-06 44.7 5.0 68 104-171 5-78 (176)
198 KOG2318 Uncharacterized conser 92.0 0.54 1.2E-05 47.5 7.3 79 103-181 171-304 (650)
199 KOG2135 Proteins containing th 91.9 0.1 2.2E-06 51.2 2.3 74 202-281 373-447 (526)
200 PF07292 NID: Nmi/IFP 35 domai 91.8 0.18 3.8E-06 38.4 3.1 72 151-223 1-74 (88)
201 PF04847 Calcipressin: Calcipr 91.8 0.41 8.8E-06 42.1 5.7 62 214-281 8-72 (184)
202 KOG2253 U1 snRNP complex, subu 91.2 0.023 4.9E-07 57.9 -3.0 151 104-264 38-197 (668)
203 KOG4285 Mitotic phosphoprotein 91.1 1 2.2E-05 41.9 7.7 77 201-284 197-274 (350)
204 KOG4483 Uncharacterized conser 90.6 1.7 3.6E-05 42.0 8.8 63 104-173 389-452 (528)
205 PF07576 BRAP2: BRCA1-associat 90.5 2.4 5.3E-05 33.8 8.5 63 200-264 12-75 (110)
206 KOG2253 U1 snRNP complex, subu 89.6 0.22 4.8E-06 51.0 2.4 71 198-277 37-108 (668)
207 KOG2135 Proteins containing th 88.8 0.21 4.6E-06 49.0 1.6 75 104-184 370-445 (526)
208 KOG4574 RNA-binding protein (c 88.8 0.26 5.7E-06 51.8 2.3 74 203-282 300-376 (1007)
209 KOG4285 Mitotic phosphoprotein 88.2 1.4 3.1E-05 41.0 6.2 65 105-176 196-260 (350)
210 PF04847 Calcipressin: Calcipr 86.7 1.8 3.9E-05 38.0 5.9 60 119-184 8-70 (184)
211 PF14111 DUF4283: Domain of un 85.8 1.7 3.7E-05 36.8 5.3 118 107-233 16-137 (153)
212 PF11767 SET_assoc: Histone ly 84.7 4.3 9.3E-05 29.1 6.0 53 212-273 11-64 (66)
213 KOG4574 RNA-binding protein (c 83.5 0.65 1.4E-05 49.0 1.9 73 107-185 299-374 (1007)
214 KOG0804 Cytoplasmic Zn-finger 82.2 3 6.5E-05 41.1 5.7 61 201-264 74-136 (493)
215 PF03880 DbpA: DbpA RNA bindin 79.5 5.8 0.00013 29.1 5.4 58 211-277 11-74 (74)
216 KOG4019 Calcineurin-mediated s 75.4 4.2 9E-05 35.1 3.9 76 202-283 11-93 (193)
217 TIGR02542 B_forsyth_147 Bacter 74.5 10 0.00022 30.1 5.5 113 114-253 11-129 (145)
218 PF11767 SET_assoc: Histone ly 73.2 11 0.00024 27.0 5.1 46 117-171 11-56 (66)
219 KOG0921 Dosage compensation co 73.1 11 0.00023 41.0 7.0 6 147-152 763-768 (1282)
220 KOG4213 RNA-binding protein La 71.3 3.4 7.3E-05 35.6 2.4 72 104-180 109-182 (205)
221 COG5193 LHP1 La protein, small 70.3 3.4 7.3E-05 40.1 2.5 66 103-168 171-246 (438)
222 PF10567 Nab6_mRNP_bdg: RNA-re 70.2 14 0.0003 34.6 6.3 88 196-283 10-111 (309)
223 PF07530 PRE_C2HC: Associated 68.4 12 0.00025 27.0 4.4 62 216-280 2-65 (68)
224 KOG4410 5-formyltetrahydrofola 68.1 17 0.00036 33.7 6.3 50 105-159 329-378 (396)
225 PF03880 DbpA: DbpA RNA bindin 65.2 15 0.00032 26.9 4.6 57 117-182 12-74 (74)
226 PF03468 XS: XS domain; Inter 63.6 7.3 0.00016 31.4 2.9 51 108-161 10-69 (116)
227 smart00596 PRE_C2HC PRE_C2HC d 63.1 13 0.00029 26.7 3.7 62 216-280 2-65 (69)
228 PRK14548 50S ribosomal protein 62.1 24 0.00051 26.7 5.2 59 108-169 22-82 (84)
229 KOG4483 Uncharacterized conser 61.1 15 0.00032 35.8 4.8 66 200-272 390-456 (528)
230 PF03468 XS: XS domain; Inter 59.9 10 0.00022 30.6 3.1 39 213-254 29-67 (116)
231 COG5180 PBP1 Protein interacti 59.8 46 0.00099 33.3 7.9 7 118-124 220-226 (654)
232 COG5638 Uncharacterized conser 58.8 13 0.00029 36.2 4.1 38 103-140 143-185 (622)
233 TIGR03636 L23_arch archaeal ri 56.0 33 0.00072 25.4 5.0 58 108-168 15-74 (77)
234 KOG2318 Uncharacterized conser 54.5 38 0.00082 34.8 6.6 81 198-278 171-306 (650)
235 KOG4410 5-formyltetrahydrofola 50.6 34 0.00074 31.8 5.1 49 201-254 330-378 (396)
236 COG5193 LHP1 La protein, small 47.8 10 0.00022 37.0 1.4 66 198-263 171-246 (438)
237 KOG2295 C2H2 Zn-finger protein 47.2 7.4 0.00016 39.5 0.5 67 103-169 228-294 (648)
238 PF15513 DUF4651: Domain of un 46.8 43 0.00093 23.6 4.0 18 216-233 9-26 (62)
239 KOG2236 Uncharacterized conser 45.9 1E+02 0.0022 31.0 7.9 8 247-254 318-325 (483)
240 PF07292 NID: Nmi/IFP 35 domai 45.4 16 0.00034 27.9 1.9 27 102-128 48-74 (88)
241 KOG4055 Uncharacterized conser 43.7 3.1 6.8E-05 35.6 -2.3 24 4-27 116-139 (213)
242 KOG2891 Surface glycoprotein [ 41.2 16 0.00034 33.7 1.6 35 105-139 148-194 (445)
243 KOG4365 Uncharacterized conser 39.8 6.3 0.00014 38.7 -1.2 79 201-280 3-82 (572)
244 PF02084 Bindin: Bindin; Inte 39.6 1.1E+02 0.0024 27.6 6.4 11 336-346 7-17 (238)
245 PF07530 PRE_C2HC: Associated 34.9 58 0.0013 23.4 3.4 60 121-183 2-63 (68)
246 PTZ00191 60S ribosomal protein 34.5 88 0.0019 26.3 4.8 56 108-166 83-140 (145)
247 COG5180 PBP1 Protein interacti 34.5 98 0.0021 31.1 5.8 12 155-166 330-341 (654)
248 KOG1999 RNA polymerase II tran 34.2 1.2E+02 0.0026 33.5 6.9 34 241-274 208-241 (1024)
249 PRK12280 rplW 50S ribosomal pr 34.2 90 0.0019 26.7 4.9 34 108-141 23-58 (158)
250 smart00596 PRE_C2HC PRE_C2HC d 34.1 53 0.0011 23.7 3.0 59 121-182 2-62 (69)
251 PRK14548 50S ribosomal protein 33.4 1.1E+02 0.0023 23.2 4.7 57 204-263 23-81 (84)
252 KOG3875 Peroxisomal biogenesis 32.9 79 0.0017 30.0 4.7 12 416-427 91-102 (362)
253 PF02714 DUF221: Domain of unk 32.3 77 0.0017 30.5 5.0 56 151-223 1-56 (325)
254 CHL00030 rpl23 ribosomal prote 32.1 1.2E+02 0.0026 23.4 4.9 35 108-142 20-56 (93)
255 KOG2891 Surface glycoprotein [ 32.0 50 0.0011 30.6 3.2 38 198-235 146-195 (445)
256 KOG4008 rRNA processing protei 30.3 40 0.00086 30.6 2.3 36 101-136 35-70 (261)
257 PF00276 Ribosomal_L23: Riboso 29.8 69 0.0015 24.5 3.3 34 108-141 21-56 (91)
258 KOG2295 C2H2 Zn-finger protein 25.6 13 0.00028 37.9 -1.7 65 200-264 230-294 (648)
259 KOG4213 RNA-binding protein La 25.2 1.1E+02 0.0024 26.6 3.9 73 199-276 109-183 (205)
260 KOG4434 Molecular chaperone SE 24.9 38 0.00083 32.8 1.3 9 149-157 454-462 (520)
261 PRK05738 rplW 50S ribosomal pr 24.5 1.2E+02 0.0026 23.3 3.8 36 107-142 20-57 (92)
262 PF04026 SpoVG: SpoVG; InterP 23.7 1.5E+02 0.0032 22.4 4.0 26 227-252 2-27 (84)
263 PF00403 HMA: Heavy-metal-asso 23.4 2.5E+02 0.0053 19.1 5.8 55 203-263 1-59 (62)
264 PF08206 OB_RNB: Ribonuclease 23.2 14 0.0003 25.6 -1.5 37 242-278 7-44 (58)
265 PRK13259 regulatory protein Sp 23.1 1.4E+02 0.0031 23.0 3.9 26 227-252 2-27 (94)
266 cd00874 RNA_Cyclase_Class_II R 22.6 6.9E+02 0.015 24.2 9.5 119 107-252 110-239 (326)
267 PF02714 DUF221: Domain of unk 22.6 94 0.002 29.9 3.6 36 246-282 1-36 (325)
268 KOG4019 Calcineurin-mediated s 22.3 48 0.001 28.8 1.3 73 105-183 9-88 (193)
269 KOG2375 Protein interacting wi 20.7 95 0.0021 33.4 3.3 7 395-401 659-665 (756)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=7.3e-35 Score=280.28 Aligned_cols=171 Identities=28% Similarity=0.440 Sum_probs=154.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||+|++|+|++|+.+++++|||||+|.++++|++||+.++.. +.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 4456899999999999999999999999999999999999999999999999999999999999988755 999999999
Q ss_pred ecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHH
Q 013270 181 LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260 (446)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai 260 (446)
++.... .....++|||+|||+.+|+++|+++|++||.|+.|+|++|+.+++++|||||+|.+.++|++||
T Consensus 183 ~a~p~~----------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 183 YARPGG----------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred cccccc----------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 875321 1234578999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCC-CcccC--eEEEEEEcccCCC
Q 013270 261 EEPQ-KMFEG--HQLQCQKAAEGKN 282 (446)
Q Consensus 261 ~~~~-~~~~G--r~l~v~~a~~~~~ 282 (446)
+.|| ..|.| ++|+|.++.....
T Consensus 253 ~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 253 SALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHhCCCccCCCceeEEEEECCcccc
Confidence 9999 55655 7999999976543
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-34 Score=250.84 Aligned_cols=174 Identities=25% Similarity=0.433 Sum_probs=157.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
......|||+.|..+++-++|++.|.+||+|.+++|+||..|+++|||+||.|.+.++|+.||..||+. |.+|.|+..|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 334678999999999999999999999999999999999999999999999999999999999999988 8889999999
Q ss_pred cccCCCCCCCcc------CcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHH
Q 013270 182 ASVGPTGPGVKE------QGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEG 255 (446)
Q Consensus 182 ~~~~~~~~~~~~------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~ 255 (446)
+..++....... -......+++|||+||+..+||++||+.|++||.|.+|||++| +||+||.|.+.|+
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhh
Confidence 988774322221 1234667899999999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHhCC-CcccCeEEEEEEcccCCC
Q 013270 256 ARKALEEPQ-KMFEGHQLQCQKAAEGKN 282 (446)
Q Consensus 256 A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~ 282 (446)
|.+||..+| .+|.|..++|.|.++...
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccCCC
Confidence 999999999 889999999999876654
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.9e-32 Score=276.41 Aligned_cols=178 Identities=22% Similarity=0.372 Sum_probs=156.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...++|||+|||+++++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.+++. |.||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45789999999999999999999999999999999999999999999999999999999999988766 99999999865
Q ss_pred ccCCCCCC-CccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013270 183 SVGPTGPG-VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261 (446)
Q Consensus 183 ~~~~~~~~-~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~ 261 (446)
...+.... ...........++|||+||++++++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+||.
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 43322111 11111223345799999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC-CcccCeEEEEEEcccCC
Q 013270 262 EPQ-KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 262 ~~~-~~~~Gr~l~v~~a~~~~ 281 (446)
.|| ..|+|+.|+|.++..+.
T Consensus 265 amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCc
Confidence 999 77999999999998654
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.6e-31 Score=246.55 Aligned_cols=177 Identities=22% Similarity=0.372 Sum_probs=151.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc--ccCcccee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK--VNNRMASC 179 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~--~~g~~i~v 179 (446)
.....+.|||+.||.++.|+||..+|++.|+|-++|||+|+.+|.+||||||+|++.+.|++||+.+|.. -.|+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999744 47899998
Q ss_pred eecccCCCC-----------------------------------------------------------------------
Q 013270 180 QLASVGPTG----------------------------------------------------------------------- 188 (446)
Q Consensus 180 ~~~~~~~~~----------------------------------------------------------------------- 188 (446)
+.+......
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn 238 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGN 238 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCC
Confidence 876432100
Q ss_pred --------CCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHH
Q 013270 189 --------PGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260 (446)
Q Consensus 189 --------~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai 260 (446)
+..............|||+||+.++|+|.|+++|+.||.|+.|+.++| ||||+|.+.++|.+|+
T Consensus 239 ~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 239 AITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAM 310 (506)
T ss_pred cceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHH
Confidence 000011112234578999999999999999999999999999999877 9999999999999999
Q ss_pred HhCC-CcccCeEEEEEEcccCCCCCCC
Q 013270 261 EEPQ-KMFEGHQLQCQKAAEGKNRTSS 286 (446)
Q Consensus 261 ~~~~-~~~~Gr~l~v~~a~~~~~~~~~ 286 (446)
+.+| ..|+|..|.|.+|++...++..
T Consensus 311 ~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 311 KETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred HHhcCceecCceEEEEecCChhhhccc
Confidence 9999 7899999999999988766554
No 5
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.4e-33 Score=257.68 Aligned_cols=173 Identities=28% Similarity=0.404 Sum_probs=153.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC--CcccC--cccee
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ--RKVNN--RMASC 179 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~--~~~~g--~~i~v 179 (446)
.+..+|||+.||..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..++ .+|.| ..|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 456899999999999999999999999999999999999999999999999999999999999985 33766 56677
Q ss_pred eecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHH
Q 013270 180 QLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKA 259 (446)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A 259 (446)
+++.....+ -...++|||+-|+..+||.+|+++|++||.|++|+|++| ..+.+||||||+|.+.+.|..|
T Consensus 112 k~Ad~E~er---------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~A 181 (510)
T KOG0144|consen 112 KYADGERER---------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAA 181 (510)
T ss_pred cccchhhhc---------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHH
Confidence 776533322 245789999999999999999999999999999999999 5899999999999999999999
Q ss_pred HHhCC--CcccC--eEEEEEEcccCCCCCCC
Q 013270 260 LEEPQ--KMFEG--HQLQCQKAAEGKNRTSS 286 (446)
Q Consensus 260 i~~~~--~~~~G--r~l~v~~a~~~~~~~~~ 286 (446)
|+.|| ..+.| .+|.|+||++++.+...
T Consensus 182 ika~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 182 IKALNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred HHhhccceeeccCCCceEEEecccCCCchHH
Confidence 99999 44655 89999999998876544
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.7e-30 Score=255.62 Aligned_cols=168 Identities=29% Similarity=0.436 Sum_probs=151.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
..++|||+|||.++|+++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|.+||+.+++. |.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 3689999999999999999999999999999999999999999999999999999999999998766 999999999875
Q ss_pred cCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC
Q 013270 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263 (446)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~ 263 (446)
.... ....++|||+|||..+++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|..||..|
T Consensus 82 ~~~~----------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 82 PSSD----------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred cccc----------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 3221 234578999999999999999999999999999999999888999999999999999999999999
Q ss_pred C-CcccC--eEEEEEEcccCCC
Q 013270 264 Q-KMFEG--HQLQCQKAAEGKN 282 (446)
Q Consensus 264 ~-~~~~G--r~l~v~~a~~~~~ 282 (446)
| ..+.| ++|.|.|+.....
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSS 173 (352)
T ss_pred CCCccCCCceeEEEEECCCCCc
Confidence 8 55655 7899999876543
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.1e-29 Score=264.46 Aligned_cols=179 Identities=26% Similarity=0.422 Sum_probs=154.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-cc----Cccc
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VN----NRMA 177 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~----g~~i 177 (446)
....++|||+|||.++|+++|+++|+.||.|.+|.|+++. +++++|||||+|.+.++|.+|++.+++. +. |+.+
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3456789999999999999999999999999999999995 7999999999999999999999998765 77 8999
Q ss_pred eeeecccCCCCCCC--------ccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEE
Q 013270 178 SCQLASVGPTGPGV--------KEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFV 249 (446)
Q Consensus 178 ~v~~~~~~~~~~~~--------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~ 249 (446)
.|.++......... ...........+|||+||++.+|+++|+++|+.||.|++|+|+.| .++.++|||||+
T Consensus 254 ~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~ 332 (562)
T TIGR01628 254 YVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVC 332 (562)
T ss_pred EeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEE
Confidence 98877544332100 001112345678999999999999999999999999999999999 789999999999
Q ss_pred eCCHHHHHHHHHhCC-CcccCeEEEEEEcccCCCC
Q 013270 250 YKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 250 F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~~ 283 (446)
|.+.++|.+|+..+| ..|+|++|.|.++..+..+
T Consensus 333 f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred eCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 999999999999999 7899999999999877654
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=6e-30 Score=251.76 Aligned_cols=179 Identities=23% Similarity=0.327 Sum_probs=151.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccC--ccceee
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNN--RMASCQ 180 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g--~~i~v~ 180 (446)
...++|||+|||.++++++|+.+|+.||.|..++++.+..++.++|||||+|.+.++|..||+.+++. +.| +.|.|.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 35678999999999999999999999999999999999888999999999999999999999998766 655 557777
Q ss_pred ecccCCCCCCC--------------cc-----------------------------------------------------
Q 013270 181 LASVGPTGPGV--------------KE----------------------------------------------------- 193 (446)
Q Consensus 181 ~~~~~~~~~~~--------------~~----------------------------------------------------- 193 (446)
++......... ..
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 66422200000 00
Q ss_pred ---------------CcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHH
Q 013270 194 ---------------QGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258 (446)
Q Consensus 194 ---------------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~ 258 (446)
.........+|||+|||+.+++++|+++|++||.|++|+|++|+.++.++|||||+|.+.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 00001123469999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC-CcccCeEEEEEEcccCCC
Q 013270 259 ALEEPQ-KMFEGHQLQCQKAAEGKN 282 (446)
Q Consensus 259 Ai~~~~-~~~~Gr~l~v~~a~~~~~ 282 (446)
||..|| ..|+||.|+|.|+..+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 999999 779999999999987754
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1e-29 Score=258.68 Aligned_cols=179 Identities=24% Similarity=0.395 Sum_probs=156.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~ 181 (446)
.+...++|||+|||.++++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+||...+..+.|+.|.|..
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 35567899999999999999999999999999999999999999999999999999999999999777779999999987
Q ss_pred cccCCCCCCC--ccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHH
Q 013270 182 ASVGPTGPGV--KEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKA 259 (446)
Q Consensus 182 ~~~~~~~~~~--~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A 259 (446)
.......... ..........++|||+|||..+|+++|+++|+.||.|..|.|++|..+|+++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 6533221111 01111123368999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCC-CcccCeEEEEEEcccC
Q 013270 260 LEEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 260 i~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
+..|+ ..|.|+.|.|.|+...
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCC
Confidence 99999 7799999999999843
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=3.4e-28 Score=245.52 Aligned_cols=170 Identities=22% Similarity=0.366 Sum_probs=138.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-c-cCccceeeec
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-V-NNRMASCQLA 182 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~-~g~~i~v~~~ 182 (446)
..++|||+|||++++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++||+.++.. + .|+.|.|+++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 79999999999999999999999998754 4 3666555433
Q ss_pred ccCC----------------------------------C--CCCC-------------------------c---------
Q 013270 183 SVGP----------------------------------T--GPGV-------------------------K--------- 192 (446)
Q Consensus 183 ~~~~----------------------------------~--~~~~-------------------------~--------- 192 (446)
.... . .... .
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 1000 0 0000 0
Q ss_pred ---------cCcccccCcceeecCCCCCcccHHHHHHHhccc--CCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013270 193 ---------EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF--GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261 (446)
Q Consensus 193 ---------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~ 261 (446)
.........++|||+||++++|+++|+++|+.| |.|++|+++ ++||||+|.+.++|.+|++
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHH
Confidence 000011234789999999999999999999999 999999876 4599999999999999999
Q ss_pred hCC-CcccCeEEEEEEcccCCCC
Q 013270 262 EPQ-KMFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 262 ~~~-~~~~Gr~l~v~~a~~~~~~ 283 (446)
.|| ..|+|+.|+|.|+.+....
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCcc
Confidence 998 8899999999999876543
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=5.1e-29 Score=259.41 Aligned_cols=167 Identities=22% Similarity=0.406 Sum_probs=150.8
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecccCC
Q 013270 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASVGP 186 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~~~ 186 (446)
+|||+|||.++||++|+++|++||.|.+|+|++|..|++++|||||+|.+.++|++||+.++.. +.|+.|+|.|+...+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999876 999999999975433
Q ss_pred CCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-C
Q 013270 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-K 265 (446)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~ 265 (446)
.. ......+|||+|||.++++++|+++|+.||.|.+|+|++| .+|+++|||||+|.+.++|.+|++.+| .
T Consensus 82 ~~--------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~ 152 (562)
T TIGR01628 82 SL--------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGM 152 (562)
T ss_pred cc--------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhccc
Confidence 21 1234568999999999999999999999999999999998 588999999999999999999999999 6
Q ss_pred cccCeEEEEEEcccCCCC
Q 013270 266 MFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 266 ~~~Gr~l~v~~a~~~~~~ 283 (446)
.++|+.|.|.....+..+
T Consensus 153 ~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 153 LLNDKEVYVGRFIKKHER 170 (562)
T ss_pred EecCceEEEecccccccc
Confidence 799999999876655444
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.1e-28 Score=212.50 Aligned_cols=168 Identities=30% Similarity=0.444 Sum_probs=153.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
+...++|.|.-||..+|++||+.+|...|+|++|+++||+.+|.+-||+||.|.+++||++|+..+|+. +..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 445688999999999999999999999999999999999999999999999999999999999999876 9999999998
Q ss_pred cccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013270 182 ASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261 (446)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~ 261 (446)
+.... .......|||.+||..+|..+|..+|++||.|.--||+.|..+|.+||.+||+|+...+|+.||.
T Consensus 118 ARPSs----------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 118 ARPSS----------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred ccCCh----------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 75322 25667899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC-Ccc--cCeEEEEEEcccC
Q 013270 262 EPQ-KMF--EGHQLQCQKAAEG 280 (446)
Q Consensus 262 ~~~-~~~--~Gr~l~v~~a~~~ 280 (446)
.|| ..- +-.+|.|+|+...
T Consensus 188 ~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 188 GLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred hccCCCCCCCCCCeEEEecCCc
Confidence 999 443 4489999999765
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.1e-27 Score=225.75 Aligned_cols=176 Identities=24% Similarity=0.361 Sum_probs=153.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeeccc
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLASV 184 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~~~ 184 (446)
..||||++||++++.++|.++|+.+|+|..|.++.++.++.+|||+||+|.-.+++++|+..... +|+||.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999865 59999999998865
Q ss_pred CCCCCCCc---------c-----Cccc--ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEE
Q 013270 185 GPTGPGVK---------E-----QGAA--AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIF 248 (446)
Q Consensus 185 ~~~~~~~~---------~-----~~~~--~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV 248 (446)
........ . .... ..+..+|.|+||||.+.+.||+.+|+.||.|.+|.|++.+.. +-+|||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg-klcGFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG-KLCGFAFV 163 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC-CccceEEE
Confidence 44332100 0 0001 223678999999999999999999999999999999987654 44599999
Q ss_pred EeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCCC
Q 013270 249 VYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGKN 282 (446)
Q Consensus 249 ~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~ 282 (446)
+|....+|..||+.+| ++|+||+|.|.||.++..
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 9999999999999999 889999999999988764
No 14
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=1.1e-27 Score=198.89 Aligned_cols=171 Identities=22% Similarity=0.317 Sum_probs=155.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
...+|||+||+..++++-|.++|-+.|+|.+++|.+|+.+...+|||||+|.++|+|+-|++-++.. |.||+|+|..++
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3589999999999999999999999999999999999999999999999999999999999999854 999999999887
Q ss_pred cCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeE-EEEeecCCCCCceeEEEEEeCCHHHHHHHHHh
Q 013270 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIET-GPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262 (446)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~ 262 (446)
..... .....+|||+||.+.+++..|.++|+.||.|.. -.|++|..||.++|||||.|.+.+.+.+|+..
T Consensus 88 ~~~~n---------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 88 AHQKN---------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred ccccc---------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 22111 333489999999999999999999999998876 57899999999999999999999999999999
Q ss_pred CC-CcccCeEEEEEEcccCCCCC
Q 013270 263 PQ-KMFEGHQLQCQKAAEGKNRT 284 (446)
Q Consensus 263 ~~-~~~~Gr~l~v~~a~~~~~~~ 284 (446)
+| ..++.|+|+|.++..+..+.
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hccchhcCCceEEEEEEecCCCc
Confidence 99 77899999999998877665
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=5.5e-26 Score=234.51 Aligned_cols=174 Identities=22% Similarity=0.344 Sum_probs=140.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccC------------CCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGS------------GEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ 169 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~ 169 (446)
.....++|||+|||+++|+++|+++|..| +.|..+.+ ++.+|||||+|.+.++|..||...+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCCC
Confidence 35567899999999999999999999975 23333433 4567999999999999999996444
Q ss_pred CcccCccceeeecccCCCCCC-------C----c--------cCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeE
Q 013270 170 RKVNNRMASCQLASVGPTGPG-------V----K--------EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIET 230 (446)
Q Consensus 170 ~~~~g~~i~v~~~~~~~~~~~-------~----~--------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~ 230 (446)
..|.|+.|.|.........+. . . .........++|||+|||+.+|+++|+++|+.||.|..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 559999999875432211100 0 0 00011234579999999999999999999999999999
Q ss_pred EEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCC
Q 013270 231 GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 231 v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~ 281 (446)
+.|++|..+|.++|||||+|.+.++|..||..|+ ..|.|+.|.|.++....
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 9999999999999999999999999999999999 77999999999997544
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.6e-26 Score=218.48 Aligned_cols=175 Identities=27% Similarity=0.421 Sum_probs=149.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeeccc
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASV 184 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~ 184 (446)
.-+|.|+||||.+...+|+.+|+.||.|.+|.|.+.+ .|+-.|||||.|.+..+|..||+.+|.. |.||.|.|.|+..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 6789999999999999999999999999999999876 4555599999999999999999999865 9999999999854
Q ss_pred CCCCCC--------------------------C------------c-c--C-----------------------------
Q 013270 185 GPTGPG--------------------------V------------K-E--Q----------------------------- 194 (446)
Q Consensus 185 ~~~~~~--------------------------~------------~-~--~----------------------------- 194 (446)
...-.. . . . .
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 321000 0 0 0 0
Q ss_pred ----------cccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q 013270 195 ----------GAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 195 ----------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
........+|||+|||+++|+++|.+.|++||+|.++.|+.|+.|++++|.|||.|.+..+|..||....
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0001123799999999999999999999999999999999999999999999999999999999999872
Q ss_pred -------CcccCeEEEEEEcccCC
Q 013270 265 -------KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 265 -------~~~~Gr~l~v~~a~~~~ 281 (446)
..|+||.|.|..|..+.
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchH
Confidence 24899999999998765
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.3e-26 Score=200.79 Aligned_cols=218 Identities=21% Similarity=0.298 Sum_probs=172.7
Q ss_pred hhhhcccCCCCChHHHHHHHHHHhccCCccc-----------------------------ccccccccCCCCCCeEEEeC
Q 013270 63 SESISSLLEPYSKDQLIDLIAAAATKIPLLH-----------------------------DHILETADRDVSQRKIFVHG 113 (446)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~l~V~n 113 (446)
.|+.++++....+.+.+++.+++.+....-. -.-.....+.....+|||.+
T Consensus 55 qdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSG 134 (360)
T KOG0145|consen 55 QDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSG 134 (360)
T ss_pred HHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEec
Confidence 3667777888888777777777654433100 00011233344567899999
Q ss_pred CCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcc-c--CccceeeecccCCCCCC
Q 013270 114 LGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKV-N--NRMASCQLASVGPTGPG 190 (446)
Q Consensus 114 Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~-~--g~~i~v~~~~~~~~~~~ 190 (446)
||..+|..||+.+|+.||.|..-+|+.|..+|.+||.+||.|...++|+.||+.+|+.. . -..|.|+++........
T Consensus 135 lPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~ 214 (360)
T KOG0145|consen 135 LPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTN 214 (360)
T ss_pred CCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999998663 2 35678877643321100
Q ss_pred C-----------------------c--------------c----------------CcccccCcceeecCCCCCcccHHH
Q 013270 191 V-----------------------K--------------E----------------QGAAAQGERKIYVSNVPRDVEKEK 217 (446)
Q Consensus 191 ~-----------------------~--------------~----------------~~~~~~~~~~l~V~nLp~~~te~~ 217 (446)
. + . .........+|||.||..+++|.-
T Consensus 215 ~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~ 294 (360)
T KOG0145|consen 215 QALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESI 294 (360)
T ss_pred hhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhH
Confidence 0 0 0 000122458999999999999999
Q ss_pred HHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccC
Q 013270 218 LRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 218 L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
|+++|.+||.|..|+|++|..|+++||||||++.+-++|..||..|| ..+.+|.|.|+|...+
T Consensus 295 LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 295 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999 6799999999997654
No 18
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=209.31 Aligned_cols=178 Identities=28% Similarity=0.525 Sum_probs=161.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeeccc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASV 184 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~~ 184 (446)
+.++|||++|+|+++++.|+++|..||+|.+|.+++|+.+++++||+||+|.+++.+.++|....+.|.|+.|.++.+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred CCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q 013270 185 GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
......... .....+|||++||..+++++++++|.+||.|..+.++.|..+.+++||+||+|.+.+++.+++...-
T Consensus 85 r~~~~~~~~----~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f 160 (311)
T KOG4205|consen 85 REDQTKVGR----HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKF 160 (311)
T ss_pred ccccccccc----ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccce
Confidence 443322111 2267899999999999999999999999999999999999999999999999999999999998877
Q ss_pred CcccCeEEEEEEcccCCCCCCC
Q 013270 265 KMFEGHQLQCQKAAEGKNRTSS 286 (446)
Q Consensus 265 ~~~~Gr~l~v~~a~~~~~~~~~ 286 (446)
+.|+|+.+.|..|.++......
T Consensus 161 ~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eeecCceeeEeeccchhhcccc
Confidence 8999999999999998865544
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=2.4e-25 Score=226.39 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=137.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcC--C-CcccCccceeeec
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP--Q-RKVNNRMASCQLA 182 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~--~-~~~~g~~i~v~~~ 182 (446)
+++|||+|||+++|+++|+++|+.||.|.+|.|+++ +|||||+|.+.++|.+|+..+ + ..+.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 689999999999999999999999999999999853 579999999999999999864 3 4599999999998
Q ss_pred ccCCCCCCCcc--CcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHH
Q 013270 183 SVGPTGPGVKE--QGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260 (446)
Q Consensus 183 ~~~~~~~~~~~--~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai 260 (446)
........... .........+|||+||++.+|+++|+++|+.||.|.+|.|+++.. +|+|||+|.+.++|.+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAK 151 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHH
Confidence 64432211110 011123345899999999999999999999999999999987632 479999999999999999
Q ss_pred HhCC-CcccC--eEEEEEEcccCC
Q 013270 261 EEPQ-KMFEG--HQLQCQKAAEGK 281 (446)
Q Consensus 261 ~~~~-~~~~G--r~l~v~~a~~~~ 281 (446)
+.|| ..|.| +.|+|.|++...
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCC
Confidence 9999 66644 689999998754
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=3.3e-25 Score=228.72 Aligned_cols=176 Identities=19% Similarity=0.272 Sum_probs=146.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
..++|||+|||+.+|+++|+++|+.||.|..|.|+++..+|.++|||||+|.+.++|..||..+++. |.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 4579999999999999999999999999999999999999999999999999999999999998765 999999999886
Q ss_pred cCCCCCCCccC------------------cccccCcceeecCCCCCc----------ccHHHHHHHhcccCCeeEEEEee
Q 013270 184 VGPTGPGVKEQ------------------GAAAQGERKIYVSNVPRD----------VEKEKLRGFFERFGEIETGPIGF 235 (446)
Q Consensus 184 ~~~~~~~~~~~------------------~~~~~~~~~l~V~nLp~~----------~te~~L~~~F~~~G~V~~v~i~~ 235 (446)
........... .....+..+|+|.||... ...++|+++|++||.|+.|.|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 44322111000 011235678999999632 23478999999999999999987
Q ss_pred cC---CCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccC
Q 013270 236 DI---TTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 236 d~---~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
+. .++.++|+|||+|.+.++|.+|+..|| ..|+||.|.|.|....
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 52 345678999999999999999999999 7899999999998653
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=3.9e-25 Score=224.85 Aligned_cols=170 Identities=18% Similarity=0.195 Sum_probs=140.3
Q ss_pred CCCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 104 VSQRKIFVHGLGW-DTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 104 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
...++|||+|||+ .+|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|..||..|++. |.|+.|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999999863 589999999999999999988765 9999999998
Q ss_pred cccCCCCCCCc-------------------c-C-------cccccCcceeecCCCCCcccHHHHHHHhcccCC--eeEEE
Q 013270 182 ASVGPTGPGVK-------------------E-Q-------GAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE--IETGP 232 (446)
Q Consensus 182 ~~~~~~~~~~~-------------------~-~-------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--V~~v~ 232 (446)
+.......... . . .....++.+|||+|||+.+|+++|+++|+.||. |..|+
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 75432111000 0 0 000134679999999999999999999999998 88888
Q ss_pred EeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeE------EEEEEcccC
Q 013270 233 IGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQ------LQCQKAAEG 280 (446)
Q Consensus 233 i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~------l~v~~a~~~ 280 (446)
++.+. +..+|+|||+|.+.++|.+||..|| ..|.++. |+|.|++++
T Consensus 428 ~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKD--NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCC--CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 86543 3358999999999999999999999 7798885 999998754
No 22
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=4.8e-26 Score=207.50 Aligned_cols=179 Identities=22% Similarity=0.373 Sum_probs=157.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
--|+|||+.|.+++.|+.|+..|..||+|.+|.+.+|+.|++++|||||+|.-+|.|..|++.+|+. +.||.|+|.+.+
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 3589999999999999999999999999999999999999999999999999999999999999977 899999998654
Q ss_pred cCCCCCC-CccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHh
Q 013270 184 VGPTGPG-VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262 (446)
Q Consensus 184 ~~~~~~~-~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~ 262 (446)
.-+.... ...-..+...-.+|||..++.+++++||+..|+.||+|.+|.+-+++..+.+|||+||+|.+..+-..||..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 3332211 111122344568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CcccCeEEEEEEcccCCCC
Q 013270 263 PQ-KMFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 263 ~~-~~~~Gr~l~v~~a~~~~~~ 283 (446)
|| ..++|..|+|-.+......
T Consensus 272 MNlFDLGGQyLRVGk~vTPP~a 293 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCVTPPDA 293 (544)
T ss_pred cchhhcccceEecccccCCCch
Confidence 99 7799999999988765543
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=7.4e-25 Score=194.59 Aligned_cols=148 Identities=22% Similarity=0.404 Sum_probs=136.4
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecccC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASVG 185 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~~ 185 (446)
.+|||+|||.++++.+|+.+|++||+|.+|.|+++ ||||..++...|+.||..|++. |+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999976 9999999999999999988765 99999999987643
Q ss_pred CCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-
Q 013270 186 PTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ- 264 (446)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~- 264 (446)
.....+|+|+||.+.++.++||..|++||.|.+|.|++| |+||.|+..++|..||+.|+
T Consensus 75 ------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 75 ------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred ------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccc
Confidence 445789999999999999999999999999999999855 99999999999999999998
Q ss_pred CcccCeEEEEEEcccCCC
Q 013270 265 KMFEGHQLQCQKAAEGKN 282 (446)
Q Consensus 265 ~~~~Gr~l~v~~a~~~~~ 282 (446)
.+|.|++++|..+..+-.
T Consensus 135 ~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 135 TEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred cccccceeeeeeeccccc
Confidence 889999999999876643
No 24
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2.2e-24 Score=189.18 Aligned_cols=183 Identities=20% Similarity=0.342 Sum_probs=153.5
Q ss_pred cCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc--ccC--cc
Q 013270 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK--VNN--RM 176 (446)
Q Consensus 101 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~--~~g--~~ 176 (446)
.+..+.++|||+.|...-.|+|++.+|..||.|.+|.+.+.. +|.+||||||.|.+.-+|..||..+++. +.| .-
T Consensus 14 srg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 14 SRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred cCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 334467999999999999999999999999999999999986 8999999999999999999999998643 655 44
Q ss_pred ceeeecccCCCC--------------------------------------------------------------------
Q 013270 177 ASCQLASVGPTG-------------------------------------------------------------------- 188 (446)
Q Consensus 177 i~v~~~~~~~~~-------------------------------------------------------------------- 188 (446)
|.|+++....++
T Consensus 93 LVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~an 172 (371)
T KOG0146|consen 93 LVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNAN 172 (371)
T ss_pred eEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhc
Confidence 666665332211
Q ss_pred --------CC----------------------------------------------------------------------
Q 013270 189 --------PG---------------------------------------------------------------------- 190 (446)
Q Consensus 189 --------~~---------------------------------------------------------------------- 190 (446)
+.
T Consensus 173 gl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 173 GLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred ccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHH
Confidence 00
Q ss_pred ----------------------CccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEE
Q 013270 191 ----------------------VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIF 248 (446)
Q Consensus 191 ----------------------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV 248 (446)
......+....|+|||..||.++.+.+|...|-.||.|.+.+|+.|+.|+.+|+|+||
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 0000012335699999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCCCCC
Q 013270 249 VYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGKNRT 284 (446)
Q Consensus 249 ~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~~~ 284 (446)
.|+++.+|..||..|| ..|+-++|+|.+.+++...+
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 9999999999999999 66999999999998887543
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=4.2e-24 Score=210.92 Aligned_cols=175 Identities=25% Similarity=0.386 Sum_probs=149.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCC---CCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVT---GKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~---g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
.++|||.||++++|.++|..+|...|.|.+|.|...+.. -.+.|||||+|.+.++|+.|++.|+++ |.|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999988765421 135699999999999999999999855 9999999999
Q ss_pred cccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013270 182 ASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261 (446)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~ 261 (446)
+...+.....+ ........++|+|+|||+..+..+|+.+|..||.|.+|+|+.....+.++|||||+|-++.+|.+|+.
T Consensus 595 S~~k~~~~~gK-~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 595 SENKPASTVGK-KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFD 673 (725)
T ss_pred ccCcccccccc-ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHH
Confidence 88433333221 12223347899999999999999999999999999999999876677789999999999999999999
Q ss_pred hCC-CcccCeEEEEEEcccCC
Q 013270 262 EPQ-KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 262 ~~~-~~~~Gr~l~v~~a~~~~ 281 (446)
.|. +-|.||.|.+.|+....
T Consensus 674 al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 674 ALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred hhcccceechhhheehhccch
Confidence 998 67999999999997543
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.1e-23 Score=201.91 Aligned_cols=156 Identities=21% Similarity=0.416 Sum_probs=142.4
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecccC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASVG 185 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~~ 185 (446)
..|||+ +++|+..|.++|+.+|+|.+|+|.+|. | +-|||||.|.++++|++||+.+|.. +.|+.|++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999997 6 9999999999999999999999976 99999999998643
Q ss_pred CCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-
Q 013270 186 PTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ- 264 (446)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~- 264 (446)
+. .|||.||+..++..+|.++|+.||.|.+|+|.+|. .| ++|| ||+|++.++|.+||..+|
T Consensus 76 ~~---------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng 137 (369)
T KOG0123|consen 76 PS---------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNG 137 (369)
T ss_pred Cc---------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcC
Confidence 32 29999999999999999999999999999999994 45 9999 999999999999999999
Q ss_pred CcccCeEEEEEEcccCCCCCCC
Q 013270 265 KMFEGHQLQCQKAAEGKNRTSS 286 (446)
Q Consensus 265 ~~~~Gr~l~v~~a~~~~~~~~~ 286 (446)
..+.|+.|.|.....+..+...
T Consensus 138 ~ll~~kki~vg~~~~~~er~~~ 159 (369)
T KOG0123|consen 138 MLLNGKKIYVGLFERKEEREAP 159 (369)
T ss_pred cccCCCeeEEeeccchhhhccc
Confidence 6699999999998887766544
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=4.7e-24 Score=198.87 Aligned_cols=178 Identities=22% Similarity=0.392 Sum_probs=152.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc--ccC--cccee
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK--VNN--RMASC 179 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~--~~g--~~i~v 179 (446)
.+.++|||+.|+..+||.||+++|++||.|++|.|++|. .+.+||||||.|.+.|-|..||+.+|+. +.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 457899999999999999999999999999999999995 8999999999999999999999999865 666 67888
Q ss_pred eecccCCCCCCC--------------------------------------------------------------------
Q 013270 180 QLASVGPTGPGV-------------------------------------------------------------------- 191 (446)
Q Consensus 180 ~~~~~~~~~~~~-------------------------------------------------------------------- 191 (446)
+|+...+.....
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 888544322000
Q ss_pred ----------------------------------------c---------------------------------------
Q 013270 192 ----------------------------------------K--------------------------------------- 192 (446)
Q Consensus 192 ----------------------------------------~--------------------------------------- 192 (446)
.
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence 0
Q ss_pred -------------------------------------------------------cCcccccCcceeecCCCCCcccHHH
Q 013270 193 -------------------------------------------------------EQGAAAQGERKIYVSNVPRDVEKEK 217 (446)
Q Consensus 193 -------------------------------------------------------~~~~~~~~~~~l~V~nLp~~~te~~ 217 (446)
....+......|||.+||.++-+.|
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 0000011347899999999999999
Q ss_pred HHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCCC
Q 013270 218 LRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGKN 282 (446)
Q Consensus 218 L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~ 282 (446)
|-..|..||.|.+.+|+.|+.|+.+++|+||.|++..+|..||..|| ..|+.++|+|...+.+.+
T Consensus 441 l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 441 LIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999999999999999999999999999999999999 669999999999876654
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=7.1e-23 Score=208.47 Aligned_cols=171 Identities=20% Similarity=0.256 Sum_probs=141.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeeccc
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASV 184 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~ 184 (446)
.++|||+|||.++|+++|+++|+.||.|..|.|++++.+|+++|||||+|.+.++|.+|+..+++. |.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 689999999999999999999999999999999999989999999999999999999999988765 9999999999542
Q ss_pred CCCCCC-------------------------------------------Cc-----------------------------
Q 013270 185 GPTGPG-------------------------------------------VK----------------------------- 192 (446)
Q Consensus 185 ~~~~~~-------------------------------------------~~----------------------------- 192 (446)
...... ..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 110000 00
Q ss_pred ------cC--cccccCcceeecCCCCCccc----------HHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHH
Q 013270 193 ------EQ--GAAAQGERKIYVSNVPRDVE----------KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVE 254 (446)
Q Consensus 193 ------~~--~~~~~~~~~l~V~nLp~~~t----------e~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~ 254 (446)
.. ........+|+|.||-...+ .+||++.|++||.|+.|.|.. ....|++||+|.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHH
Confidence 00 00123567899999944333 378999999999999998853 456899999999999
Q ss_pred HHHHHHHhCC-CcccCeEEEEEEcccC
Q 013270 255 GARKALEEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 255 ~A~~Ai~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
+|.+|++.|| .+|+||.|.|.|....
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 9999999999 7899999999998654
No 29
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.90 E-value=1.2e-21 Score=186.40 Aligned_cols=176 Identities=18% Similarity=0.315 Sum_probs=144.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeecc
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~ 183 (446)
.....|-+++|||++|++||.+||+.| .|+++.+.+ .+|+..|-|||+|.+++++++||++....+..|.|.|-.+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 345778899999999999999999999 577765554 57999999999999999999999998888999999998876
Q ss_pred cCCCCCCCccCccc-ccCcceeecCCCCCcccHHHHHHHhcccCCeeE-EEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013270 184 VGPTGPGVKEQGAA-AQGERKIYVSNVPRDVEKEKLRGFFERFGEIET-GPIGFDITTGKSRGFAIFVYKTVEGARKALE 261 (446)
Q Consensus 184 ~~~~~~~~~~~~~~-~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~ 261 (446)
........+..... ......|.+++||+.||++||.++|+..-.|.. |-++.| ..+++.|-|||+|++.+.|++|+.
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH
Confidence 55443333222221 246678999999999999999999998765555 445555 568899999999999999999999
Q ss_pred hCCCcccCeEEEEEEcccCCCC
Q 013270 262 EPQKMFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 262 ~~~~~~~Gr~l~v~~a~~~~~~ 283 (446)
.+...|+-|-|.|-.+...+.+
T Consensus 164 rhre~iGhRYIEvF~Ss~~e~~ 185 (510)
T KOG4211|consen 164 RHRENIGHRYIEVFRSSRAEVK 185 (510)
T ss_pred HHHHhhccceEEeehhHHHHHH
Confidence 9888899999999888655443
No 30
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.89 E-value=7.4e-24 Score=203.93 Aligned_cols=184 Identities=24% Similarity=0.389 Sum_probs=157.6
Q ss_pred ccCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCcccee
Q 013270 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASC 179 (446)
Q Consensus 100 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v 179 (446)
...+++.++||+-.|+...+..+|.+||+.+|+|.+|+|+.|+.+++++|.|||+|.+.+++..||...+..+.|.+|.|
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 34466789999999999999999999999999999999999999999999999999999999999988788899999999
Q ss_pred eecccCCCCCCCc---cC-cccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHH
Q 013270 180 QLASVGPTGPGVK---EQ-GAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEG 255 (446)
Q Consensus 180 ~~~~~~~~~~~~~---~~-~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~ 255 (446)
+............ .. ..-..+...|||+||++++++++|+.+|++||.|+.|.+++|.+||.++|||||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 8765433221110 01 0112223349999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHhCC-CcccCeEEEEEEcccCCCC
Q 013270 256 ARKALEEPQ-KMFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 256 A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~~ 283 (446)
|.+|++.|| .+|.||.|+|.....+-..
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeeccc
Confidence 999999999 7899999999987765443
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=6.1e-23 Score=180.72 Aligned_cols=142 Identities=20% Similarity=0.392 Sum_probs=122.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
+...+||||+||+.++||+=|..||+..|.|..|+|+.| .++|.|+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWA 48 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccccc
Confidence 345799999999999999999999999999999999876 4455555
Q ss_pred ccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHh
Q 013270 183 SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262 (446)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~ 262 (446)
.... ...........-|||+.|...++.++||+.|.+||+|.+++|++|..|+++|||+||.|-+.++|+.||..
T Consensus 49 ~~p~-----nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 49 TAPG-----NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred cCcc-----cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 4331 11122234467899999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CcccCeEEEEEEcccCCCC
Q 013270 263 PQ-KMFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 263 ~~-~~~~Gr~l~v~~a~~~~~~ 283 (446)
|| ..|++|.|+-.||..+...
T Consensus 124 MnGqWlG~R~IRTNWATRKp~e 145 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWATRKPSE 145 (321)
T ss_pred hCCeeeccceeeccccccCccc
Confidence 99 7899999999999987743
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.4e-21 Score=186.64 Aligned_cols=170 Identities=26% Similarity=0.454 Sum_probs=149.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeeccc
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASV 184 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~ 184 (446)
...|||.||+.++|..+|.++|+.||.|.+|++.+|. .| ++|| ||+|.++++|.+||+.+|+. +.++.|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 3449999999999999999999999999999999996 56 9999 99999999999999999877 8999999988765
Q ss_pred CCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q 013270 185 GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
.......... ....-..+||.|++.+++++.|..+|..+|.|.++.|+.+ ..++++||+||.|.+.++|..|++.++
T Consensus 153 ~~er~~~~~~--~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 153 KEEREAPLGE--YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred hhhhcccccc--hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhcc
Confidence 5443322222 3556688999999999999999999999999999999998 567799999999999999999999999
Q ss_pred -CcccCeEEEEEEcccCC
Q 013270 265 -KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 265 -~~~~Gr~l~v~~a~~~~ 281 (446)
..+.+..+.|..+..+.
T Consensus 230 ~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 230 GKIFGDKELYVGRAQKKS 247 (369)
T ss_pred CCcCCccceeecccccch
Confidence 66888999999887743
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.84 E-value=1.2e-19 Score=184.04 Aligned_cols=79 Identities=19% Similarity=0.313 Sum_probs=74.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
..++|||+|||.++++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+||..+|+. |.|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999999999999999999999999999999999999876 999999998764
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=9.1e-18 Score=140.03 Aligned_cols=151 Identities=19% Similarity=0.271 Sum_probs=127.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...++|||+|||.++.+.||.++|-+||.|..|.|... -..-+||||+|+++.+|+.||..-++. +.|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45799999999999999999999999999999998533 235679999999999999999998877 99999999998
Q ss_pred ccCCCCCCC----------------ccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEE
Q 013270 183 SVGPTGPGV----------------KEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246 (446)
Q Consensus 183 ~~~~~~~~~----------------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~a 246 (446)
......... ............|.|.+||.+.+.+||+++..+.|.|-...+.+| |++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cce
Confidence 655322110 111223445678999999999999999999999999999888876 489
Q ss_pred EEEeCCHHHHHHHHHhCC
Q 013270 247 IFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 247 fV~F~~~~~A~~Ai~~~~ 264 (446)
.|+|...++..-|+..|+
T Consensus 154 vV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred eeeeeehhhHHHHHHhhc
Confidence 999999999999999997
No 35
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=1.2e-17 Score=141.09 Aligned_cols=84 Identities=23% Similarity=0.440 Sum_probs=79.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+|+++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|+.||+.|| ..|+|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 5567899999999999999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred cccCC
Q 013270 277 AAEGK 281 (446)
Q Consensus 277 a~~~~ 281 (446)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97654
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.74 E-value=1.2e-17 Score=161.29 Aligned_cols=169 Identities=22% Similarity=0.319 Sum_probs=132.9
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecccC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASVG 185 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~~ 185 (446)
.+|||+||..++++++|+.+|+.||.|..|.+.+|.+||+++||+||+|.+.++|.+|+..+|+. |-||.|+|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 34999999999999999999999999999999999889999999999999999999999999876 89999998754321
Q ss_pred CCCCCC---------------------------------c-----------------------------cCcccc-----
Q 013270 186 PTGPGV---------------------------------K-----------------------------EQGAAA----- 198 (446)
Q Consensus 186 ~~~~~~---------------------------------~-----------------------------~~~~~~----- 198 (446)
-..... . ......
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 110000 0 000001
Q ss_pred --cCcceeecCCC--CCccc--------HHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-C
Q 013270 199 --QGERKIYVSNV--PRDVE--------KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-K 265 (446)
Q Consensus 199 --~~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~ 265 (446)
.++.++.+.|+ |.+.| .+||.+.|.+||.|..|.|-+ .+.|+.||.|.+.+.|..|+.+|| .
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~-----ns~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDK-----NSAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEcc-----CCCceEEEecCcHHHHHHHHHHHhhh
Confidence 33456666666 22222 278889999999998877632 335999999999999999999999 8
Q ss_pred cccCeEEEEEEcccC
Q 013270 266 MFEGHQLQCQKAAEG 280 (446)
Q Consensus 266 ~~~Gr~l~v~~a~~~ 280 (446)
+|.||.|+..|-...
T Consensus 514 WF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 514 WFAGRMITAKYLPLE 528 (549)
T ss_pred hhccceeEEEEeehh
Confidence 899999999997544
No 37
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.73 E-value=1e-16 Score=146.43 Aligned_cols=172 Identities=22% Similarity=0.320 Sum_probs=138.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeE--------EEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEE--------CKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNR 175 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~ 175 (446)
.++.|||.|||.++|.+++.++|++||-|.. |+|.++. .|..+|-|+|.|...+++..|+..|+.. |.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 4677999999999999999999999997753 8888885 6999999999999999999999999866 9999
Q ss_pred cceeeecccCCCCCC----------------------------CccCcccccCcceeecCCCC----Cccc-------HH
Q 013270 176 MASCQLASVGPTGPG----------------------------VKEQGAAAQGERKIYVSNVP----RDVE-------KE 216 (446)
Q Consensus 176 ~i~v~~~~~~~~~~~----------------------------~~~~~~~~~~~~~l~V~nLp----~~~t-------e~ 216 (446)
.|+|..+........ ...........++|.|+||= +..+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999998754321100 00112223456889999982 1222 36
Q ss_pred HHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCC
Q 013270 217 KLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 217 ~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~ 281 (446)
||++-+++||.|.+|.|. | ..+.|.+-|.|.+.++|..||+.|+ +.|+||.|..+...-+.
T Consensus 292 dl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 788889999999999884 3 5668999999999999999999999 78999999988765443
No 38
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.73 E-value=6.4e-17 Score=151.44 Aligned_cols=172 Identities=23% Similarity=0.345 Sum_probs=142.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhcc-CCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGG-SGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
..|.+||.|||+++.+.+|+++|.. .|+|+.|.++.| .+|++||||.|+|+++|.+++|++.+++. ++||.|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4567999999999999999999965 789999999999 48999999999999999999999999866 99999999754
Q ss_pred ccCCCC----------------------------------------CCCc-----c------------------------
Q 013270 183 SVGPTG----------------------------------------PGVK-----E------------------------ 193 (446)
Q Consensus 183 ~~~~~~----------------------------------------~~~~-----~------------------------ 193 (446)
...... .... .
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 221000 0000 0
Q ss_pred ------CcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Cc
Q 013270 194 ------QGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KM 266 (446)
Q Consensus 194 ------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~ 266 (446)
..-..+-..++||.||.+.+..+.|++.|.-.|.|+.|.+-.|+ .|.++|||.++|.++-+|..||..++ .-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 00012235789999999999999999999999999999998885 57999999999999999999999998 55
Q ss_pred ccCeEEEEEEcc
Q 013270 267 FEGHQLQCQKAA 278 (446)
Q Consensus 267 ~~Gr~l~v~~a~ 278 (446)
+..++.++....
T Consensus 281 ~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 281 LFDRRMTVRLDR 292 (608)
T ss_pred Cccccceeeccc
Confidence 777888887744
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=3.7e-17 Score=138.19 Aligned_cols=83 Identities=31% Similarity=0.610 Sum_probs=76.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~~ 183 (446)
..++|||+|||+++|+++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++||+.++. .|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 468999999999999999999999999999999999999999999999999999999999998764 5999999999987
Q ss_pred cCCC
Q 013270 184 VGPT 187 (446)
Q Consensus 184 ~~~~ 187 (446)
..+.
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 5443
No 40
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=3.2e-16 Score=136.18 Aligned_cols=165 Identities=22% Similarity=0.251 Sum_probs=137.2
Q ss_pred CCeEEEeCCCCCCCHHHHHH----hhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 106 QRKIFVHGLGWDTTQESLLS----AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~----~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
..||||.||...+..++|+. +|+.||.|.+|... .+.+.||-|||.|.+.+.|-.|+..+++. +.|+.++++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999988 99999999998876 36789999999999999999999999887 999999999
Q ss_pred ecccCCCCCCCc---------------cC-------------------------cccccCcceeecCCCCCcccHHHHHH
Q 013270 181 LASVGPTGPGVK---------------EQ-------------------------GAAAQGERKIYVSNVPRDVEKEKLRG 220 (446)
Q Consensus 181 ~~~~~~~~~~~~---------------~~-------------------------~~~~~~~~~l~V~nLp~~~te~~L~~ 220 (446)
++.......... .. .....+...||+.|||..++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 886443211100 00 11245678999999999999999999
Q ss_pred HhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Ccc-cCeEEEEEEcc
Q 013270 221 FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMF-EGHQLQCQKAA 278 (446)
Q Consensus 221 ~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~-~Gr~l~v~~a~ 278 (446)
+|.+|..-..|+++..+ .+.|||+|.+...|..|...+. ..| ....+.|.++.
T Consensus 166 lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999998654 7899999999999999999987 333 37888888764
No 41
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=4.5e-17 Score=141.68 Aligned_cols=84 Identities=31% Similarity=0.611 Sum_probs=79.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEc
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a 277 (446)
+..-++|||++|+|.++.|+|+++|++||+|+++.|+.|+.+|+|||||||+|.+.++|.+|++..|-.|+||+..|++|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 013270 278 AEGK 281 (446)
Q Consensus 278 ~~~~ 281 (446)
....
T Consensus 89 ~lg~ 92 (247)
T KOG0149|consen 89 SLGG 92 (247)
T ss_pred hhcC
Confidence 8743
No 42
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=4.2e-17 Score=141.83 Aligned_cols=83 Identities=43% Similarity=0.772 Sum_probs=78.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
+..-++|||++|+|+++.++|+++|++||+|++..|+.|+.+|++|||+||+|++.++|.+|++..+-.|+||+..|+.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 013270 183 SVG 185 (446)
Q Consensus 183 ~~~ 185 (446)
...
T Consensus 89 ~lg 91 (247)
T KOG0149|consen 89 SLG 91 (247)
T ss_pred hhc
Confidence 763
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=1.6e-15 Score=150.73 Aligned_cols=171 Identities=24% Similarity=0.271 Sum_probs=133.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.++..+.|+|+|||..+..++|..+|..||.|..|.+. + .|. -++|+|.++.+|++|+..+... +..-++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-ccc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 45667999999999999999999999999999988443 2 232 3999999999999999998755 666666666
Q ss_pred ecccCCCC--------------C-----CCc----------cCc-----------ccccCcceeecCCCCCcccHHHHHH
Q 013270 181 LASVGPTG--------------P-----GVK----------EQG-----------AAAQGERKIYVSNVPRDVEKEKLRG 220 (446)
Q Consensus 181 ~~~~~~~~--------------~-----~~~----------~~~-----------~~~~~~~~l~V~nLp~~~te~~L~~ 220 (446)
|+...... . ... ... ......++|||.||++.+|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 65322111 0 000 000 0011234499999999999999999
Q ss_pred HhcccCCeeEEEEeecCCC---CCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcc
Q 013270 221 FFERFGEIETGPIGFDITT---GKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAA 278 (446)
Q Consensus 221 ~F~~~G~V~~v~i~~d~~~---g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~ 278 (446)
+|...|.|.++.|...+.- -.|.|||||+|.+.++|..|++.|+ +.|+|+.|.|+++.
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999988765322 1356999999999999999999999 88999999999998
No 44
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=6.8e-15 Score=135.04 Aligned_cols=176 Identities=17% Similarity=0.274 Sum_probs=138.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
...-++|||..+.++.+|+||+.+|+.||+|..|.+-+++..+.+|||+||+|.+..+-..||..+|-. +.|..|+|..
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 446789999999999999999999999999999999999988899999999999999999999999976 9999898876
Q ss_pred cccCCCC-------------------------------------------------------------------------
Q 013270 182 ASVGPTG------------------------------------------------------------------------- 188 (446)
Q Consensus 182 ~~~~~~~------------------------------------------------------------------------- 188 (446)
+...+..
T Consensus 287 ~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~ 366 (544)
T KOG0124|consen 287 CVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVIT 366 (544)
T ss_pred ccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceec
Confidence 5322211
Q ss_pred ------CC--------------------------CccCc-----------------------------------ccccCc
Q 013270 189 ------PG--------------------------VKEQG-----------------------------------AAAQGE 201 (446)
Q Consensus 189 ------~~--------------------------~~~~~-----------------------------------~~~~~~ 201 (446)
+. .+... -....+
T Consensus 367 ~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S 446 (544)
T KOG0124|consen 367 GVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQES 446 (544)
T ss_pred cCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccC
Confidence 00 00000 001235
Q ss_pred ceeecCCC--CCccc---HHHHHHHhcccCCeeEEEEeecCCCCCc----eeEEEEEeCCHHHHHHHHHhCC-CcccCeE
Q 013270 202 RKIYVSNV--PRDVE---KEKLRGFFERFGEIETGPIGFDITTGKS----RGFAIFVYKTVEGARKALEEPQ-KMFEGHQ 271 (446)
Q Consensus 202 ~~l~V~nL--p~~~t---e~~L~~~F~~~G~V~~v~i~~d~~~g~~----kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~ 271 (446)
+.|.++|+ |.+++ +.+|++.|.+||.|.+|.|...+.++.- ---.||+|....++.+|+..|+ ++|.||+
T Consensus 447 ~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~ 526 (544)
T KOG0124|consen 447 TVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRK 526 (544)
T ss_pred cEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCce
Confidence 67788887 55554 4689999999999999998776554422 2347999999999999999999 7899999
Q ss_pred EEEEEcc
Q 013270 272 LQCQKAA 278 (446)
Q Consensus 272 l~v~~a~ 278 (446)
+.....+
T Consensus 527 VvAE~YD 533 (544)
T KOG0124|consen 527 VVAEVYD 533 (544)
T ss_pred eehhhhh
Confidence 8876554
No 45
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=1.8e-15 Score=146.12 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=79.8
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
.....++|||+|||+++|+++|+++|+.||.|++|+|++|+.+++++|||||+|.+.++|.+||+.|+ ..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 35578999999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred EcccCC
Q 013270 276 KAAEGK 281 (446)
Q Consensus 276 ~a~~~~ 281 (446)
|+.+..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987643
No 46
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=1.2e-14 Score=137.70 Aligned_cols=157 Identities=24% Similarity=0.374 Sum_probs=123.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeeccc
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLASV 184 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~~~ 184 (446)
.++|||+|||+++|+++|.++|..||.|..|.|..|+.+++++|||||+|.+.++|..|+..+++ .|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999984 59999999999642
Q ss_pred --CCCCCCC------------ccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEe
Q 013270 185 --GPTGPGV------------KEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250 (446)
Q Consensus 185 --~~~~~~~------------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F 250 (446)
....... ............+++.+++..++..++...|..+|.+..+.+...........+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 1111111 11122345678899999999999999999999999997777765543334444445555
Q ss_pred CCHHHHHHHHHh
Q 013270 251 KTVEGARKALEE 262 (446)
Q Consensus 251 ~~~~~A~~Ai~~ 262 (446)
.....+......
T Consensus 275 ~~~~~~~~~~~~ 286 (306)
T COG0724 275 EASKDALESNSR 286 (306)
T ss_pred hHHHhhhhhhcc
Confidence 555544444443
No 47
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.58 E-value=3.9e-14 Score=121.97 Aligned_cols=158 Identities=19% Similarity=0.242 Sum_probs=117.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEee-CCCCCccceEEEEEccHHHHHHHHHcCCCc-c---cCccc
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVID-KVTGKAKGFAFIVFKTRKAAVKALKNPQRK-V---NNRMA 177 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~-~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~---~g~~i 177 (446)
...-|||||.+||.++.-.||..+|..|--.+.+.|... +.....+-+|||+|.+..+|..|+.++|+. | .+..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 345799999999999999999999999876666666433 222235679999999999999999999876 4 35677
Q ss_pred eeeecccCCCCCCCccC---------------------------------------------------------------
Q 013270 178 SCQLASVGPTGPGVKEQ--------------------------------------------------------------- 194 (446)
Q Consensus 178 ~v~~~~~~~~~~~~~~~--------------------------------------------------------------- 194 (446)
++..++........+..
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 77776543221100000
Q ss_pred -------------cccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013270 195 -------------GAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261 (446)
Q Consensus 195 -------------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~ 261 (446)
......+.+|||.||..++||++|+.+|+.|-....++|.. ...-..|||+|++.+.|..|+.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHH
Confidence 00011347899999999999999999999998777666632 2224579999999999999998
Q ss_pred hCC
Q 013270 262 EPQ 264 (446)
Q Consensus 262 ~~~ 264 (446)
.|.
T Consensus 267 ~lq 269 (284)
T KOG1457|consen 267 HLQ 269 (284)
T ss_pred Hhh
Confidence 876
No 48
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=3.3e-15 Score=131.38 Aligned_cols=155 Identities=21% Similarity=0.368 Sum_probs=127.2
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecccC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASVG 185 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~~ 185 (446)
..|||++||+.+.+.+|..||..||.|.+|.+. .||+||+|.+..+|..|+..+++. |.+-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 479999999999999999999999999999884 258999999999999999999866 78777888777642
Q ss_pred -----CCCCC-----CccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHH
Q 013270 186 -----PTGPG-----VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEG 255 (446)
Q Consensus 186 -----~~~~~-----~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~ 255 (446)
..... ...........+.|+|.|+...+.+.+|.++|..+|.+....+ .++++||+|.+.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 11111 1111222445688999999999999999999999999965444 37799999999999
Q ss_pred HHHHHHhCC-CcccCeEEEEEEc
Q 013270 256 ARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 256 A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
|.+|+..++ ..+.++.|++...
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 999999999 7799999999443
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=6.7e-15 Score=108.88 Aligned_cols=69 Identities=36% Similarity=0.557 Sum_probs=64.2
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccce
Q 013270 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMAS 178 (446)
Q Consensus 109 l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~ 178 (446)
|||+|||.++|+++|+++|+.||.|..+.++.+ .+++.+|||||+|.+.++|.+|++.+++. +.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 68999999999999999999999977655 8888764
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=8.6e-15 Score=108.28 Aligned_cols=69 Identities=42% Similarity=0.763 Sum_probs=65.8
Q ss_pred eecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEE
Q 013270 204 IYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273 (446)
Q Consensus 204 l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~ 273 (446)
|||+|||..+|+++|+++|+.||.|..+.+..+ .++..+|+|||+|.+.++|.+|++.++ ..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 789999999999999999999999998 779999885
No 51
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.2e-14 Score=127.00 Aligned_cols=83 Identities=23% Similarity=0.418 Sum_probs=78.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
..+.++|.|.||+.++++++|+++|.+||.|..|.|.+|+.||.+||||||+|.+.++|.+||..|| .-++.-.|+|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 4477899999999999999999999999999999999999999999999999999999999999999 558889999999
Q ss_pred cccC
Q 013270 277 AAEG 280 (446)
Q Consensus 277 a~~~ 280 (446)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 52
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.3e-14 Score=126.87 Aligned_cols=80 Identities=28% Similarity=0.399 Sum_probs=76.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
+.++|-|.||+.+++|++|++||.+||.|..|.|.+|+.||.+||||||.|.+.++|.+||..|++. +..-.|+|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 6788999999999999999999999999999999999999999999999999999999999999987 999999999986
Q ss_pred c
Q 013270 184 V 184 (446)
Q Consensus 184 ~ 184 (446)
.
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 3
No 53
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=2.3e-14 Score=140.73 Aligned_cols=179 Identities=23% Similarity=0.307 Sum_probs=142.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
......+||++||...++++++++...||.+...+++.|..+|.++||||.+|.+......|+..+|+. +.++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 345678999999999999999999999999999999999999999999999999999999999999987 8889998887
Q ss_pred cccCCCCCCCccC--------------cccccCcceeecCCCC--Ccc--------cHHHHHHHhcccCCeeEEEEeecC
Q 013270 182 ASVGPTGPGVKEQ--------------GAAAQGERKIYVSNVP--RDV--------EKEKLRGFFERFGEIETGPIGFDI 237 (446)
Q Consensus 182 ~~~~~~~~~~~~~--------------~~~~~~~~~l~V~nLp--~~~--------te~~L~~~F~~~G~V~~v~i~~d~ 237 (446)
+............ .........|.+.|+= .++ --|+++.-|..||.|..|.|+++-
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 7544322211111 1223445666666652 111 125777888899999999999872
Q ss_pred ---CCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCC
Q 013270 238 ---TTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 238 ---~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~ 281 (446)
...-..|..||+|.+.+++++|...|+ ..|.||.|...|..+.+
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 223457889999999999999999999 78999999999987644
No 54
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.2e-14 Score=114.37 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=75.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
...+++|||+||.+.++||+|.++|+.+|+|..|.+-.|+.+..+.|||||+|.+.++|..|++-++ ..++.|+|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 4457899999999999999999999999999999998999999999999999999999999999999 789999999999
Q ss_pred c
Q 013270 277 A 277 (446)
Q Consensus 277 a 277 (446)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 6
No 55
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.52 E-value=5.4e-14 Score=142.89 Aligned_cols=116 Identities=22% Similarity=0.320 Sum_probs=88.0
Q ss_pred cHHHHHHHHHcCCCc-ccCccceeeecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEee
Q 013270 157 TRKAAVKALKNPQRK-VNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGF 235 (446)
Q Consensus 157 ~~~~A~~Al~~~~~~-~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~ 235 (446)
-.++|.+||...++. +........+....+ ..........++|||+|||+++++++|+++|++||.|.+|+|++
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~-----~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~ 92 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPP-----GWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMM 92 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCC-----cccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEE
Confidence 367888888876543 433333322221111 01122244568999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCHHHHHHHHHhCC-Ccc-cCeEEEEEEcc
Q 013270 236 DITTGKSRGFAIFVYKTVEGARKALEEPQ-KMF-EGHQLQCQKAA 278 (446)
Q Consensus 236 d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~-~Gr~l~v~~a~ 278 (446)
| .+++++|||||+|.+.++|.+||+.|| ..| .|+.|.|.++.
T Consensus 93 D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 93 D-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred C-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 9 899999999999999999999999998 555 57887776654
No 56
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=9.4e-14 Score=131.10 Aligned_cols=121 Identities=25% Similarity=0.344 Sum_probs=99.9
Q ss_pred cHHHHHHHHHcCCCcccCccceeeecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeec
Q 013270 157 TRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFD 236 (446)
Q Consensus 157 ~~~~A~~Al~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d 236 (446)
+.++|.++|.+. .|..|.|.....+...+............+.|||+.||.++.|++|.-+|++.|+|-++|||+|
T Consensus 43 ~~eaal~al~E~----tgy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD 118 (506)
T KOG0117|consen 43 SEEAALKALLER----TGYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMD 118 (506)
T ss_pred cHHHHHHHHHHh----cCceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeec
Confidence 477788877763 3445556655555544444455555678899999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEeCCHHHHHHHHHhCC-Ccc-cCeEEEEEEcccCC
Q 013270 237 ITTGKSRGFAIFVYKTVEGARKALEEPQ-KMF-EGHQLQCQKAAEGK 281 (446)
Q Consensus 237 ~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~-~Gr~l~v~~a~~~~ 281 (446)
+.+|.+||||||+|.+.++|..||+.|| ++| .|+.|.|+.+..+.
T Consensus 119 ~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~ 165 (506)
T KOG0117|consen 119 PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANC 165 (506)
T ss_pred ccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecc
Confidence 9999999999999999999999999998 554 78999988877553
No 57
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=4.1e-14 Score=104.73 Aligned_cols=69 Identities=29% Similarity=0.543 Sum_probs=62.7
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCccce
Q 013270 109 IFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMAS 178 (446)
Q Consensus 109 l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~ 178 (446)
|||+|||+++++++|+++|+.||.|..+++..++. ++.+|+|||+|.+.++|.+|+..++ ..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 9999999999999999999999998 558998764
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=5.7e-14 Score=103.98 Aligned_cols=69 Identities=39% Similarity=0.697 Sum_probs=63.9
Q ss_pred eecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEE
Q 013270 204 IYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273 (446)
Q Consensus 204 l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~ 273 (446)
|||+|||+++++++|+++|+.||.|..+++..++. +.++|+|||+|.+.++|.+|+..++ ..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 9999999999999999999999999 789999885
No 59
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2.2e-14 Score=112.82 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=76.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
....+++|||+||+..++|++|.++|+++|+|..|.+-.|+.+...-|||||+|-+.++|+.|+..++++ +..+.|.+.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 3456899999999999999999999999999999999999999999999999999999999999999876 999999999
Q ss_pred ecc
Q 013270 181 LAS 183 (446)
Q Consensus 181 ~~~ 183 (446)
|..
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 864
No 60
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=4.1e-14 Score=128.59 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=76.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|+|.|||+.+.|-||+.+|.+||.|.+|.|+.+ ...|||||||+|++.++|++|.++|| ..|.||+|+|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 556789999999999999999999999999999999887 46789999999999999999999999 789999999999
Q ss_pred cccCC
Q 013270 277 AAEGK 281 (446)
Q Consensus 277 a~~~~ 281 (446)
+..+-
T Consensus 171 ATarV 175 (376)
T KOG0125|consen 171 ATARV 175 (376)
T ss_pred cchhh
Confidence 98764
No 61
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=7.1e-14 Score=126.31 Aligned_cols=77 Identities=22% Similarity=0.262 Sum_probs=69.6
Q ss_pred cceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEcccC
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a~~~ 280 (446)
.++|||+||++.+|+++|+++|+.||.|++|+|++|.. ++|||||+|.+.++|..||...+..|.||.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998853 579999999999999999963348899999999998643
No 62
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=9.6e-14 Score=125.45 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=70.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeecccC
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~~~ 185 (446)
.++|||+|||+++|+++|+++|+.||.|.+|+|++|+. .+|||||+|.++++|+.||...+..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 58999999999999999999999999999999998863 579999999999999999976567799999999997644
Q ss_pred C
Q 013270 186 P 186 (446)
Q Consensus 186 ~ 186 (446)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 63
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=5.4e-15 Score=123.33 Aligned_cols=86 Identities=28% Similarity=0.450 Sum_probs=79.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
-.++.-|||+|||++.||.||.-+|++||.|++|.++||+.||+++||||+.|.+..+...|+..+|+. |.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 456789999999999999999999999999999999999999999999999999999999999999866 9999999998
Q ss_pred cccCCCC
Q 013270 182 ASVGPTG 188 (446)
Q Consensus 182 ~~~~~~~ 188 (446)
....+.+
T Consensus 112 v~~Yk~p 118 (219)
T KOG0126|consen 112 VSNYKKP 118 (219)
T ss_pred cccccCC
Confidence 7654443
No 64
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1e-13 Score=124.46 Aligned_cols=83 Identities=23% Similarity=0.414 Sum_probs=78.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
..+-+||||.-|+++++|..|+..|+.||.|+.|+|++|..||+++|||||+|.+..+...|.+..+ ..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 5778999999999999999999999999999999999999999999999999999999999999998 779999999998
Q ss_pred cccC
Q 013270 277 AAEG 280 (446)
Q Consensus 277 a~~~ 280 (446)
-.-.
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 6543
No 65
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.48 E-value=3.8e-14 Score=120.65 Aligned_cols=85 Identities=28% Similarity=0.454 Sum_probs=79.5
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
......|.|-||.+.++.++|+.+|++||.|-+|.|++|+.|+.++|||||.|.+..+|+.|++.|+ .+|+|+.|.|.+
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 5567889999999999999999999999999999999999999999999999999999999999999 789999999999
Q ss_pred cccCCC
Q 013270 277 AAEGKN 282 (446)
Q Consensus 277 a~~~~~ 282 (446)
|.-...
T Consensus 90 arygr~ 95 (256)
T KOG4207|consen 90 ARYGRP 95 (256)
T ss_pred hhcCCC
Confidence 875543
No 66
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=4.4e-15 Score=123.84 Aligned_cols=84 Identities=23% Similarity=0.392 Sum_probs=77.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
-..+.-|||+|||+.+||.||..+|++||+|+.|.+++|..||+++||||+.|++..+...|+..|| ..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 669999999987
Q ss_pred cccCC
Q 013270 277 AAEGK 281 (446)
Q Consensus 277 a~~~~ 281 (446)
...-.
T Consensus 112 v~~Yk 116 (219)
T KOG0126|consen 112 VSNYK 116 (219)
T ss_pred ccccc
Confidence 65433
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1e-13 Score=126.09 Aligned_cols=84 Identities=15% Similarity=0.315 Sum_probs=75.3
Q ss_pred ccCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccce
Q 013270 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMAS 178 (446)
Q Consensus 100 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~ 178 (446)
.+...-.++|+|.|||+.+.|-||+.+|++||.|.+|.|+.+. --+|||+||+|.+.+||++|.++++++ +.||+|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3344457899999999999999999999999999999999884 348999999999999999999999877 9999999
Q ss_pred eeecccC
Q 013270 179 CQLASVG 185 (446)
Q Consensus 179 v~~~~~~ 185 (446)
|..+...
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9988644
No 68
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.3e-14 Score=120.78 Aligned_cols=95 Identities=24% Similarity=0.394 Sum_probs=87.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||++|..++++.-|...|-+||.|.+|.++.|-+++++||||||+|.-.++|..||..|| .+|.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4567899999999999999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred cccCCCCCCCCCCCCc
Q 013270 277 AAEGKNRTSSNSSSSN 292 (446)
Q Consensus 277 a~~~~~~~~~~~~~~~ 292 (446)
|+|.+-+.....+-+.
T Consensus 87 AkP~kikegsqkPvWA 102 (298)
T KOG0111|consen 87 AKPEKIKEGSQKPVWA 102 (298)
T ss_pred cCCccccCCCCCCccc
Confidence 9998877666555443
No 69
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.47 E-value=5.7e-14 Score=131.44 Aligned_cols=179 Identities=18% Similarity=0.208 Sum_probs=146.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...+++|++++.+.+.+.++..+|..+|.+..+.+........++|+++|.|...+.+..||...... +.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45799999999999999999999999999888888877778899999999999999999999987653 55554444433
Q ss_pred ccCCCCCCCccCcccccCcceee-cCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013270 183 SVGPTGPGVKEQGAAAQGERKIY-VSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261 (446)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~ 261 (446)
....................++| |++|++.+++++|+.+|..+|.|..++++.++.++.++||+||+|.+...+..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 32222122222222234445555 99999999999999999999999999999999999999999999999999999999
Q ss_pred hCC-CcccCeEEEEEEcccCCCC
Q 013270 262 EPQ-KMFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 262 ~~~-~~~~Gr~l~v~~a~~~~~~ 283 (446)
. . ..+.++++.+.+..+....
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred c-ccCcccCcccccccCCCCccc
Confidence 8 6 7799999999998876543
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.47 E-value=1.2e-12 Score=123.04 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=66.5
Q ss_pred cceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
.++|||+|||+++|++.|++-|..||.|.++.|+ +.|+++| .|.|.++++|++|+..|+ ..++||.|.|.|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3889999999999999999999999999999995 4588887 899999999999999999 7799999999873
No 71
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.9e-13 Score=122.86 Aligned_cols=80 Identities=31% Similarity=0.517 Sum_probs=74.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
...-+||||.-|+++++|.+|+..|+.||+|..|+|++|+.||+++|||||+|.++-+...|.+..++. |+|+.|.|..
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 356799999999999999999999999999999999999999999999999999999999999987654 9999999986
Q ss_pred c
Q 013270 182 A 182 (446)
Q Consensus 182 ~ 182 (446)
.
T Consensus 178 E 178 (335)
T KOG0113|consen 178 E 178 (335)
T ss_pred c
Confidence 4
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=2.4e-13 Score=129.53 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=72.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCH--HHHHHHHHhCC-CcccCeEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTV--EGARKALEEPQ-KMFEGHQLQC 274 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~--~~A~~Ai~~~~-~~~~Gr~l~v 274 (446)
.....+||||||++.++++||+.+|+.||.|.+|.|++ .+| ||||||+|.+. .++.+||..|| ..+.||.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 45668999999999999999999999999999999994 567 99999999987 78999999999 7899999999
Q ss_pred EEcccC
Q 013270 275 QKAAEG 280 (446)
Q Consensus 275 ~~a~~~ 280 (446)
..|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999865
No 73
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.2e-12 Score=126.25 Aligned_cols=175 Identities=20% Similarity=0.298 Sum_probs=124.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeC-CCC--Cccc---eEEEEEccHHHHHHHHHcCCCccc---
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDK-VTG--KAKG---FAFIVFKTRKAAVKALKNPQRKVN--- 173 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~~g--~~~G---~afV~f~~~~~A~~Al~~~~~~~~--- 173 (446)
..-++.|||++||++++|+.|...|..||.+. |...... ..+ -.+| |+|+.|.++.++..-|..+...-.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 45678999999999999999999999999875 3333211 111 2456 999999999999998877532111
Q ss_pred ----CccceeeecccCCCCC----CCccCcccccCcceeecCCCCCcccHHHHHHHhc-ccCCeeEEEEeecCCCCCcee
Q 013270 174 ----NRMASCQLASVGPTGP----GVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE-RFGEIETGPIGFDITTGKSRG 244 (446)
Q Consensus 174 ----g~~i~v~~~~~~~~~~----~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~V~~v~i~~d~~~g~~kG 244 (446)
-..++.+.....+... ........-++.+|||||+||.-++.++|..+|+ -||.|..+-|-.|++-+.++|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 1111111110000000 0111223356789999999999999999999999 799999999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhCC----CcccCeEEEEEEcc
Q 013270 245 FAIFVYKTVEGARKALEEPQ----KMFEGHQLQCQKAA 278 (446)
Q Consensus 245 ~afV~F~~~~~A~~Ai~~~~----~~~~Gr~l~v~~a~ 278 (446)
-|-|+|.+..+-.+||.+-- +.=-.++|.|+...
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccceeeeeccee
Confidence 99999999999999997632 22123566666543
No 74
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.9e-13 Score=111.84 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=71.7
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
...++|||+||+..+++.||..+|..||.|..|.|-+.+ .|||||+|+++.+|+.|+..|+ ..|+|..|+|.++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 347899999999999999999999999999999997654 8999999999999999999999 7899999999998
Q ss_pred ccCC
Q 013270 278 AEGK 281 (446)
Q Consensus 278 ~~~~ 281 (446)
.-..
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 6544
No 75
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=3.7e-13 Score=106.82 Aligned_cols=86 Identities=21% Similarity=0.364 Sum_probs=80.7
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
.......|||.+++..++++||.+.|..||+|+.|++-.|+.||..+|||+|+|.+..+|.+|+..+| ..|.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred EcccCCC
Q 013270 276 KAAEGKN 282 (446)
Q Consensus 276 ~a~~~~~ 282 (446)
|+-.+..
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9986654
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=4.9e-13 Score=111.24 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=71.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
-.++|||+||+..+++.||..+|..||+|.+|+|-+++ .|||||+|.++.+|+.|+..|++. |.|..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36899999999999999999999999999999997754 589999999999999999999866 999999999987
Q ss_pred cCCC
Q 013270 184 VGPT 187 (446)
Q Consensus 184 ~~~~ 187 (446)
..+.
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5544
No 77
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.40 E-value=6.4e-12 Score=117.50 Aligned_cols=165 Identities=20% Similarity=0.246 Sum_probs=131.8
Q ss_pred CCeEEEeCCCCC-CCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 106 QRKIFVHGLGWD-TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 106 ~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
.+.|.|.||-.+ +|.+-|..+|.-||+|..|+|+.++.+ -|+|+|.+...|+.|++.+++. +.|+.|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 688999999755 899999999999999999999988642 6999999999999999999754 999999999876
Q ss_pred cCCCCCCCccC-------------------------cccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCC
Q 013270 184 VGPTGPGVKEQ-------------------------GAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDIT 238 (446)
Q Consensus 184 ~~~~~~~~~~~-------------------------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~ 238 (446)
........... ..-..++.+|.+.|+|.+++||+|+..|..-|-..+....
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf---- 447 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF---- 447 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----
Confidence 44322211100 0112456799999999999999999999998876554332
Q ss_pred CCCceeEEEEEeCCHHHHHHHHHhCC-CcccC-eEEEEEEccc
Q 013270 239 TGKSRGFAIFVYKTVEGARKALEEPQ-KMFEG-HQLQCQKAAE 279 (446)
Q Consensus 239 ~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~G-r~l~v~~a~~ 279 (446)
-++.+-++++.+.+.++|..|+..++ +.+.+ ..|+|+|++.
T Consensus 448 f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 448 FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 23346799999999999999999997 66655 5899999864
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=99.40 E-value=6.8e-13 Score=126.49 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=69.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccH--HHHHHHHHcCCCc-ccCcccee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTR--KAAVKALKNPQRK-VNNRMASC 179 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~--~~A~~Al~~~~~~-~~g~~i~v 179 (446)
.....+||||||++++|++||+.+|..||.|.+|.|++ .+| ||||||+|.+. .++.+||..|++. +.||.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34568999999999999999999999999999999994 467 99999999987 7899999999866 99999999
Q ss_pred eecc
Q 013270 180 QLAS 183 (446)
Q Consensus 180 ~~~~ 183 (446)
..+.
T Consensus 83 NKAK 86 (759)
T PLN03213 83 EKAK 86 (759)
T ss_pred eecc
Confidence 9874
No 79
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.39 E-value=4.6e-13 Score=112.12 Aligned_cols=82 Identities=24% Similarity=0.337 Sum_probs=78.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
.....+|||+||+..++++.|+++|-+.|.|..+++++|+.+...+|||||+|.+.++|+-|++-|| ..|.||+|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999999 679999999999
Q ss_pred ccc
Q 013270 277 AAE 279 (446)
Q Consensus 277 a~~ 279 (446)
+..
T Consensus 86 as~ 88 (203)
T KOG0131|consen 86 ASA 88 (203)
T ss_pred ccc
Confidence 983
No 80
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.4e-12 Score=116.04 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=69.8
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEccc
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a~~ 279 (446)
...+|||+||++.+|+++|+++|+.||+|.+|+|++| +..++||||+|.+.++|..|+...+..|.+++|.|..+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 4579999999999999999999999999999999988 4556899999999999999996666889999999998764
No 81
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.3e-12 Score=116.19 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=69.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeeccc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASV 184 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~~ 184 (446)
...+|||+||++.+|+++|++||+.||+|.+|+|++|. +.+|||||+|.++++|+.|+...+..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45899999999999999999999999999999999884 556899999999999999998878889999998887653
No 82
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1.6e-12 Score=98.54 Aligned_cols=81 Identities=23% Similarity=0.383 Sum_probs=72.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
..-++.|||+|||+.+|.|++.++|.+||.|..|+|-..+ .-+|.|||.|++..+|.+|+..|+ ..++++.|.|-|
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 4557899999999999999999999999999999996554 449999999999999999999999 679999999999
Q ss_pred cccCC
Q 013270 277 AAEGK 281 (446)
Q Consensus 277 a~~~~ 281 (446)
..+.+
T Consensus 92 yq~~~ 96 (124)
T KOG0114|consen 92 YQPED 96 (124)
T ss_pred cCHHH
Confidence 87654
No 83
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=1.8e-12 Score=120.06 Aligned_cols=174 Identities=19% Similarity=0.296 Sum_probs=131.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccC----CCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeee
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGS----GEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~----G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~ 181 (446)
.-.|-+++||+++++.|+.+||..- |.++.|-+++.+ +|+..|-|||.|..+++|+.||.+....+.-|.|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4567889999999999999999742 244566666654 79999999999999999999999977777777776654
Q ss_pred cccCC------------CC-----CC----CccCcccccCcceeecCCCCCcccHHHHHHHhcccCC-eeE--EEEeecC
Q 013270 182 ASVGP------------TG-----PG----VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE-IET--GPIGFDI 237 (446)
Q Consensus 182 ~~~~~------------~~-----~~----~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~--v~i~~d~ 237 (446)
+.... .. +. ....-.......+|.+++||+..+.+||.++|..|-. |.. |+++.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 32110 00 00 0001111234678999999999999999999999863 444 677776
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCC
Q 013270 238 TTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 238 ~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~ 281 (446)
..|++.|-|||+|.+.+.|..|...-+ +....|.|.|--+...+
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 579999999999999999999988877 44569999998876544
No 84
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.38 E-value=1.1e-11 Score=118.82 Aligned_cols=169 Identities=20% Similarity=0.311 Sum_probs=127.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeE-EEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEE-CKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~ 183 (446)
....|-+++||+.||++||.+||+..-.|.. |.++.+ ..+++.|-|||+|.+.+.|+.||......|..|.|.|-.++
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 4578999999999999999999998865555 445556 46889999999999999999999998777888888776542
Q ss_pred cCCC--------------CCCC-----c---------------------------------------------------c
Q 013270 184 VGPT--------------GPGV-----K---------------------------------------------------E 193 (446)
Q Consensus 184 ~~~~--------------~~~~-----~---------------------------------------------------~ 193 (446)
.... .+.. + .
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 1100 0000 0 0
Q ss_pred C--c-----------ccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHH
Q 013270 194 Q--G-----------AAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260 (446)
Q Consensus 194 ~--~-----------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai 260 (446)
. . ........++.++||+..++.+|..+|+..-.+ .|.|-.. .+|+..|-|+|+|.+.++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhh
Confidence 0 0 000112678889999999999999999986444 5666555 57999999999999999999999
Q ss_pred HhCCCcccCeEEEEEE
Q 013270 261 EEPQKMFEGHQLQCQK 276 (446)
Q Consensus 261 ~~~~~~~~Gr~l~v~~ 276 (446)
..-...+..|-|.+..
T Consensus 339 skd~anm~hrYVElFl 354 (510)
T KOG4211|consen 339 GKDGANMGHRYVELFL 354 (510)
T ss_pred ccCCcccCcceeeecc
Confidence 8876666666666544
No 85
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=2.2e-12 Score=95.15 Aligned_cols=71 Identities=38% Similarity=0.674 Sum_probs=66.3
Q ss_pred eeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 203 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
+|||+|||..+++++|+++|..||.|..+++..+. +.++|+|||+|.+.++|..|+..++ ..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7889999999999999999999998 77999999873
No 86
>smart00360 RRM RNA recognition motif.
Probab=99.37 E-value=2.6e-12 Score=94.40 Aligned_cols=70 Identities=43% Similarity=0.690 Sum_probs=65.8
Q ss_pred cCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 206 VSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 206 V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+..++ ..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988789999999999999999999999998 77999999873
No 87
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.36 E-value=1.3e-12 Score=127.92 Aligned_cols=81 Identities=27% Similarity=0.500 Sum_probs=78.3
Q ss_pred ceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccC
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
+.|||+|||+++++++|..+|+..|.|.+++++.|++||+++||||++|.+.++|..|++.|| .++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999 7899999999999876
Q ss_pred CC
Q 013270 281 KN 282 (446)
Q Consensus 281 ~~ 282 (446)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 88
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.35 E-value=7.3e-13 Score=112.93 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=76.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
.-++|-|-||.+-++.++|+.+|++||.|-+|.|.+|+.|..++|||||.|....+|+.|++.|++. |+|+.|.|+++.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 3578999999999999999999999999999999999999999999999999999999999999766 999999999886
Q ss_pred cCC
Q 013270 184 VGP 186 (446)
Q Consensus 184 ~~~ 186 (446)
-..
T Consensus 92 ygr 94 (256)
T KOG4207|consen 92 YGR 94 (256)
T ss_pred cCC
Confidence 544
No 89
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=6e-12 Score=111.36 Aligned_cols=101 Identities=23% Similarity=0.375 Sum_probs=85.4
Q ss_pred ccceeeecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHH
Q 013270 175 RMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVE 254 (446)
Q Consensus 175 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~ 254 (446)
|.|.|+.+..... ..+.++|||+-|...-.|||++.+|..||.|++|.+++. ..|.+||++||.|.+..
T Consensus 3 rpiqvkpadsesr----------g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~ 71 (371)
T KOG0146|consen 3 RPIQVKPADSESR----------GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHA 71 (371)
T ss_pred CCccccccccccC----------CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccch
Confidence 5666666543221 336789999999999999999999999999999999998 47999999999999999
Q ss_pred HHHHHHHhCC--CcccC--eEEEEEEcccCCCCCCC
Q 013270 255 GARKALEEPQ--KMFEG--HQLQCQKAAEGKNRTSS 286 (446)
Q Consensus 255 ~A~~Ai~~~~--~~~~G--r~l~v~~a~~~~~~~~~ 286 (446)
+|..||..|+ ..+-| ..|.|+|++..+.|..+
T Consensus 72 eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER~lR 107 (371)
T KOG0146|consen 72 EAQAAINALHGSQTMPGASSSLVVKFADTDKERTLR 107 (371)
T ss_pred HHHHHHHHhcccccCCCCccceEEEeccchHHHHHH
Confidence 9999999998 45666 78999999988766544
No 90
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=3.5e-12 Score=94.12 Aligned_cols=70 Identities=37% Similarity=0.534 Sum_probs=64.2
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCcccee
Q 013270 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASC 179 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v 179 (446)
+|||+|||..+++++|+++|+.||.|..+.+.+++ +.++|+|||+|.+.++|..|+..++ ..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999876 7889999999999999999999987 4488888765
No 91
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.33 E-value=8.4e-12 Score=116.72 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=124.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC---CcccCccceee
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ---RKVNNRMASCQ 180 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~---~~~~g~~i~v~ 180 (446)
..++.|.++|||++++|+||..++..||+|..+.+.+.+ + -|||+|.++++|..-+.... -.+.|+.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk----n--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK----N--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc----h--hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 368999999999999999999999999999999886544 2 79999999999887444332 22677777776
Q ss_pred ecccCC------------------------CCCCC------ccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeE
Q 013270 181 LASVGP------------------------TGPGV------KEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIET 230 (446)
Q Consensus 181 ~~~~~~------------------------~~~~~------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~ 230 (446)
++.... ..... .........-.+++|.|+-+.++-|-|..+|++||.|..
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlK 179 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLK 179 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEE
Confidence 542110 00000 001111234467889999999999999999999999998
Q ss_pred EEEeecCCCCCceeE-EEEEeCCHHHHHHHHHhCC--CcccC-eEEEEEEcccCC
Q 013270 231 GPIGFDITTGKSRGF-AIFVYKTVEGARKALEEPQ--KMFEG-HQLQCQKAAEGK 281 (446)
Q Consensus 231 v~i~~d~~~g~~kG~-afV~F~~~~~A~~Ai~~~~--~~~~G-r~l~v~~a~~~~ 281 (446)
|.-+.. +.|| |+|+|.+.+.|..|...|+ .+.+| ..|+|.|++...
T Consensus 180 IiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~ 229 (492)
T KOG1190|consen 180 IITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTD 229 (492)
T ss_pred EEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhccc
Confidence 766533 3566 9999999999999999998 44666 788888887543
No 92
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.32 E-value=1.2e-11 Score=124.23 Aligned_cols=113 Identities=24% Similarity=0.307 Sum_probs=89.7
Q ss_pred cCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCcccee
Q 013270 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASC 179 (446)
Q Consensus 101 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v 179 (446)
.....++||||++|+..+++.||..+|+.||+|.+|.++. ++|||||.+.+..+|.+|+.+|. ..+.++.|+|
T Consensus 416 ~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki 489 (894)
T KOG0132|consen 416 HISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKI 489 (894)
T ss_pred ceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEE
Confidence 3456899999999999999999999999999999999864 46899999999999999999995 5599999999
Q ss_pred eecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcc
Q 013270 180 QLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER 224 (446)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 224 (446)
.|+....... .........+=|..|||.--.+||+.+++.
T Consensus 490 ~Wa~g~G~ks-----e~k~~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 490 AWAVGKGPKS-----EYKDYWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred eeeccCCcch-----hhhhhhhcccCeeEeehHhcCHHHHHhhhh
Confidence 9997543321 111233344566778988666667777763
No 93
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=5.2e-12 Score=100.38 Aligned_cols=86 Identities=29% Similarity=0.407 Sum_probs=79.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
+..+.-.|||.++..++|+++|.+.|..||+|..+.+-.|+.||-.+|||+|+|.+.+.|++|+..+|+. |.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3455678999999999999999999999999999999999999999999999999999999999999865 999999999
Q ss_pred ecccCCC
Q 013270 181 LASVGPT 187 (446)
Q Consensus 181 ~~~~~~~ 187 (446)
|+.....
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9976654
No 94
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=6.8e-12 Score=92.15 Aligned_cols=69 Identities=41% Similarity=0.560 Sum_probs=63.7
Q ss_pred EeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCcccee
Q 013270 111 VHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASC 179 (446)
Q Consensus 111 V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v 179 (446)
|+|||..+++++|+++|+.||.|..+.+..++.+++++|||||+|.+.++|..|+..++ ..+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 68999999999999999999999999999988789999999999999999999999987 4488888765
No 95
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=9.1e-12 Score=94.43 Aligned_cols=76 Identities=24% Similarity=0.368 Sum_probs=68.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
..+.|||+|||+++|.++..++|.+||+|..|+|-.. ...+|-|||.|.+..+|.+|++.+.+. +.++.+.|....
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4688999999999999999999999999999999754 456899999999999999999999877 899999887653
No 96
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.30 E-value=4.5e-12 Score=124.16 Aligned_cols=80 Identities=34% Similarity=0.551 Sum_probs=76.4
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecccC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASVG 185 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~~ 185 (446)
+.|||||||+++++++|.++|+..|.|.+++++.|+.||+++||||++|.+.++|..|++.+++. +.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999855 99999999998655
Q ss_pred C
Q 013270 186 P 186 (446)
Q Consensus 186 ~ 186 (446)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.29 E-value=1.7e-11 Score=116.03 Aligned_cols=79 Identities=42% Similarity=0.667 Sum_probs=76.4
Q ss_pred cceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEccc
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAE 279 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~ 279 (446)
.++|||+|||+.+|+++|+++|..||.|..+++..|+.++.++|||||+|.+.++|..|+..++ ..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999999999999999 889999999999764
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=2.1e-11 Score=90.40 Aligned_cols=73 Identities=40% Similarity=0.629 Sum_probs=67.1
Q ss_pred eeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 203 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
+|+|+|||..+++++|+++|..||.|..+.+..++.+ .++|+|||+|.+.++|..|+..++ ..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988544 779999999999999999999999 559999999874
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.3e-11 Score=121.51 Aligned_cols=178 Identities=21% Similarity=0.330 Sum_probs=144.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccC-----------C-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGS-----------G-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR 170 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-----------G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~ 170 (446)
....+.+||+++|..++++.+..+|..- | .|..|.|- ..+.||||+|.+.+.|..|+..+..
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhcccch
Confidence 3456889999999999999999999753 2 35556553 3456999999999999999999888
Q ss_pred cccCccceeeecccCCCCC-------------CCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecC
Q 013270 171 KVNNRMASCQLASVGPTGP-------------GVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDI 237 (446)
Q Consensus 171 ~~~g~~i~v~~~~~~~~~~-------------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~ 237 (446)
.+.|+.+++......-..+ ............+++||++||..+++++++++...||.+...+++.|.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 8999888776433221111 111122335567899999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCCCCCCC
Q 013270 238 TTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGKNRTSS 286 (446)
Q Consensus 238 ~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~~~~~ 286 (446)
.+|.++||||.+|.+......|+..+| ..+.++.|+|..|........-
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~ 375 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANV 375 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccc
Confidence 999999999999999999999999999 4588899999999877654433
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.27 E-value=7.6e-10 Score=102.60 Aligned_cols=170 Identities=15% Similarity=0.126 Sum_probs=130.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcC--C-CcccCcccee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP--Q-RKVNNRMASC 179 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~--~-~~~~g~~i~v 179 (446)
...+-.|.|++|-..++|.||.+.++.||+|..|..+..+ ..|.|+|.+.+.|..++... + ..+.|....+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 3456789999999999999999999999999888876543 37999999999999998753 3 3377877777
Q ss_pred eecccCCCCCCCccCcccccCcceeec--CCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHH
Q 013270 180 QLASVGPTGPGVKEQGAAAQGERKIYV--SNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGAR 257 (446)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~V--~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~ 257 (446)
.++..+...... .+....+..|.+ -|--+.+|-|-|..++..+|.|.+|.|++. + ---|.|+|++.+.|.
T Consensus 102 NyStsq~i~R~g---~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 102 NYSTSQCIERPG---DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQ 173 (494)
T ss_pred ccchhhhhccCC---CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHH
Confidence 766443322211 222333444444 455577999999999999999999999875 2 224999999999999
Q ss_pred HHHHhCC--CcccC-eEEEEEEcccCCCCCCC
Q 013270 258 KALEEPQ--KMFEG-HQLQCQKAAEGKNRTSS 286 (446)
Q Consensus 258 ~Ai~~~~--~~~~G-r~l~v~~a~~~~~~~~~ 286 (446)
+|...|| -++.| ..|+|.||++.+-+...
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~rlnV~k 205 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTRLNVQK 205 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcceeeeee
Confidence 9999999 34555 89999999988765443
No 101
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.6e-12 Score=131.91 Aligned_cols=150 Identities=23% Similarity=0.244 Sum_probs=132.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeecc
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~ 183 (446)
+..+++||+||+..+.+.||...|..+|.+..++|......++.+|+|||+|..++++.+|+......+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 34678999999999999999999999999988888766678999999999999999999999987766665
Q ss_pred cCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC
Q 013270 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263 (446)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~ 263 (446)
...|||.|+|+..|.+.|+.+|+.+|.+++++++.. ..|+++|.+||.|.+..++.+++...
T Consensus 736 -----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 -----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred -----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccc
Confidence 246899999999999999999999999999998877 47999999999999999999999888
Q ss_pred C-CcccCeEEEEEEcccC
Q 013270 264 Q-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 264 ~-~~~~Gr~l~v~~a~~~ 280 (446)
+ ..+.-+.+.|..+++.
T Consensus 798 d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 798 DVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhhhhcCccccccCCc
Confidence 7 4566677777776663
No 102
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4e-12 Score=109.33 Aligned_cols=81 Identities=27% Similarity=0.448 Sum_probs=76.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
..++|||++|-.++||.-|...|-.||.|.+|.+..|-++.++||||||+|...|+|..||..+|.. |.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4699999999999999999999999999999999999999999999999999999999999999865 999999999986
Q ss_pred cC
Q 013270 184 VG 185 (446)
Q Consensus 184 ~~ 185 (446)
..
T Consensus 89 P~ 90 (298)
T KOG0111|consen 89 PE 90 (298)
T ss_pred Cc
Confidence 43
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=2.2e-11 Score=89.82 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=54.8
Q ss_pred HHHHHHHhc----ccCCeeEEE-EeecCCC--CCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 215 KEKLRGFFE----RFGEIETGP-IGFDITT--GKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 215 e~~L~~~F~----~~G~V~~v~-i~~d~~~--g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
+++|+++|+ .||.|.+|. |+.++.+ +.++|||||+|.+.++|.+|+..|| ..+.||.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 7777767 9999999999999999999999999 78999999873
No 104
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=3.8e-11 Score=88.97 Aligned_cols=72 Identities=38% Similarity=0.527 Sum_probs=66.0
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
+|||+|||..+++++|+++|+.||.|..+.+..++.+ ..+|+|||+|.+.++|..|+..++.. ++|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999988644 77899999999999999999999876 889888775
No 105
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.24 E-value=4.1e-11 Score=116.21 Aligned_cols=86 Identities=26% Similarity=0.414 Sum_probs=78.8
Q ss_pred cCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCcccee
Q 013270 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASC 179 (446)
Q Consensus 101 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v 179 (446)
......++|||.+|+..+...||+.+|++||.|+-.+|+++..+.-.++|+||++.+.++|.+||..|+.+ |+|+.|.|
T Consensus 400 grs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 400 GRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred cccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 33556899999999999999999999999999999999999888888999999999999999999999866 99999999
Q ss_pred eecccCC
Q 013270 180 QLASVGP 186 (446)
Q Consensus 180 ~~~~~~~ 186 (446)
..+...+
T Consensus 480 EkaKNEp 486 (940)
T KOG4661|consen 480 EKAKNEP 486 (940)
T ss_pred eecccCc
Confidence 9886554
No 106
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.2e-11 Score=111.88 Aligned_cols=112 Identities=24% Similarity=0.371 Sum_probs=88.0
Q ss_pred CCCChHHHHHHHHHHhccCCccc----ccccccccCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCC
Q 013270 71 EPYSKDQLIDLIAAAATKIPLLH----DHILETADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGK 146 (446)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~ 146 (446)
+..+.++..+++.....+..... .... ..+-.++.+.|||.-|.+-+|++||.-+|+.||+|.+|.|++|..||.
T Consensus 201 ~g~saeel~e~~~e~ea~~~A~iLEmvGDlp-dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgd 279 (479)
T KOG0415|consen 201 EGLSAEELEEVLAEKEAKAQAVILEMVGDLP-DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGD 279 (479)
T ss_pred cccCHHHHHHHHHHHHHHhhHhHHHHhcCCc-ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccc
Confidence 33445555555554444333221 1111 123345679999999999999999999999999999999999999999
Q ss_pred ccceEEEEEccHHHHHHHHHcCCC-cccCccceeeecc
Q 013270 147 AKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLAS 183 (446)
Q Consensus 147 ~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~~ 183 (446)
+-.||||+|.+.+++++|.-+|.. .|..|.|+|.++.
T Consensus 280 sLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 280 SLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred hhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 999999999999999999998854 4999999999875
No 107
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.20 E-value=5.4e-11 Score=83.65 Aligned_cols=55 Identities=36% Similarity=0.577 Sum_probs=49.5
Q ss_pred HHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 218 LRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 218 L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
|+++|++||+|.++.+..+. +++|||+|.+.++|..|+..|| ..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997662 6999999999999999999998 7799999999986
No 108
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.14 E-value=3.3e-11 Score=113.19 Aligned_cols=85 Identities=26% Similarity=0.540 Sum_probs=80.3
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEccc
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a~~ 279 (446)
..++|||++|+|+++++.|+++|..||+|.+|.|++|+.+++++||+||+|.+++...+++..-.+.|+||.|.+..+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67899999999999999999999999999999999999999999999999999999999999888999999999999998
Q ss_pred CCCCC
Q 013270 280 GKNRT 284 (446)
Q Consensus 280 ~~~~~ 284 (446)
+....
T Consensus 85 r~~~~ 89 (311)
T KOG4205|consen 85 REDQT 89 (311)
T ss_pred ccccc
Confidence 87433
No 109
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.4e-11 Score=109.91 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=78.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
.++.+.|||.-|.+-+|++||.-+|+.||.|.+|.|++|+.||.+-.||||+|.+.++.++|.-+|+ ..|+.|.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 4567899999999999999999999999999999999999999999999999999999999999997 669999999999
Q ss_pred cccC
Q 013270 277 AAEG 280 (446)
Q Consensus 277 a~~~ 280 (446)
+..-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8643
No 110
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=9.6e-11 Score=98.33 Aligned_cols=80 Identities=21% Similarity=0.445 Sum_probs=70.4
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
...++|||+|||.++.+.+|.++|.+||.|..|.|-.- -....||||+|+++.+|+.||..-+ ..++|..|+|.|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45689999999999999999999999999999988322 3446799999999999999999988 6799999999998
Q ss_pred ccCC
Q 013270 278 AEGK 281 (446)
Q Consensus 278 ~~~~ 281 (446)
.-..
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 7654
No 111
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=2.4e-11 Score=104.72 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=115.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
..+||||.||...++|+-|.++|-..|+|..|.|..++ .++.+ ||||.|.++.++.-|++.+|+. +.++.|.+.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~-- 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL-- 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc--
Confidence 46999999999999999999999999999999998775 56677 9999999999999999999866 8887776654
Q ss_pred cCCCCCCCccCcccccCcceeecCC----CCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHH
Q 013270 184 VGPTGPGVKEQGAAAQGERKIYVSN----VPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKA 259 (446)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A 259 (446)
+.++ |...++++.+...|+.-|.|..+++.++. .|+++.++||++....+.-.+
T Consensus 84 ---------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 84 ---------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred ---------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHH
Confidence 3444 66678999999999999999999999985 489999999999887777777
Q ss_pred HHhCC
Q 013270 260 LEEPQ 264 (446)
Q Consensus 260 i~~~~ 264 (446)
+....
T Consensus 142 ~~~y~ 146 (267)
T KOG4454|consen 142 LDLYQ 146 (267)
T ss_pred hhhhc
Confidence 76543
No 112
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.11 E-value=6e-11 Score=104.61 Aligned_cols=173 Identities=18% Similarity=0.257 Sum_probs=132.9
Q ss_pred CCCCeEEEeCCCCCCCHHH-H--HHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCcccee
Q 013270 104 VSQRKIFVHGLGWDTTQES-L--LSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASC 179 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~-L--~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v 179 (446)
.....+|++++-.++..+- | ...|+.+-.+....++++. -+.-++++|+.|.....-.++-..-+++ +.-+.++.
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 4566788888877776665 3 6778888777778888875 5778899999998877766665555544 33333443
Q ss_pred eecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHH
Q 013270 180 QLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKA 259 (446)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A 259 (446)
...+...... ..+......+||++.|..+++++.|-..|.+|-.-...++++|..||+++||+||.|.++.++..|
T Consensus 173 a~gtswedPs----l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 173 AAGTSWEDPS----LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred ccccccCCcc----cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHH
Confidence 3322211111 122355678999999999999999999999999989999999999999999999999999999999
Q ss_pred HHhCC-CcccCeEEEEEEcccCC
Q 013270 260 LEEPQ-KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 260 i~~~~-~~~~Gr~l~v~~a~~~~ 281 (446)
+..|+ ..++.|+|.+..+.-+.
T Consensus 249 mrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 249 MREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHhhcccccccchhHhhhhhHHh
Confidence 99999 77899999987665444
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=1.7e-10 Score=85.12 Aligned_cols=60 Identities=22% Similarity=0.416 Sum_probs=53.4
Q ss_pred HHHHHHhhc----cCCCeeEEE-EEeeCCC--CCccceEEEEEccHHHHHHHHHcCCCc-ccCcccee
Q 013270 120 QESLLSAFG----GSGEIEECK-LVIDKVT--GKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASC 179 (446)
Q Consensus 120 e~~L~~~F~----~~G~v~~v~-i~~~~~~--g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v 179 (446)
+++|+++|+ .||.|.+|. |+.++.+ ++++|||||+|.+.++|.+|+..+++. +.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999996 7777767 899999999999999999999998765 89998875
No 114
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.04 E-value=5.9e-10 Score=95.77 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=75.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhccc-CCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERF-GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
......+||..+|..+.+.+|..+|.+| |.|..+++-|++.||.|+|||||+|++.+.|.-|-+.|| ..|.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 5566789999999999999999999998 788888888999999999999999999999999999999 56889999999
Q ss_pred EcccC
Q 013270 276 KAAEG 280 (446)
Q Consensus 276 ~a~~~ 280 (446)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 97665
No 115
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.03 E-value=3.1e-10 Score=101.96 Aligned_cols=72 Identities=18% Similarity=0.431 Sum_probs=67.4
Q ss_pred ceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccC
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
.+|||+|||..+++.+|+.+|++||+|.+|.|+++ ||||..++...|..||..|+ ..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999855 99999999999999999998 6799999999999887
Q ss_pred C
Q 013270 281 K 281 (446)
Q Consensus 281 ~ 281 (446)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 116
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.02 E-value=6.9e-10 Score=97.00 Aligned_cols=83 Identities=29% Similarity=0.420 Sum_probs=74.0
Q ss_pred ccCcceeecCCCCCcccHHHHHH----HhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRG----FFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQL 272 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~----~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l 272 (446)
..+..+|||.||+..+..++|++ +|++||.|.+|..+ .+.+.+|-|||.|.+.+.|..|+..|+ ..|.|+++
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34455999999999999999998 99999999998886 368889999999999999999999998 67999999
Q ss_pred EEEEcccCCCC
Q 013270 273 QCQKAAEGKNR 283 (446)
Q Consensus 273 ~v~~a~~~~~~ 283 (446)
+|.||..+..-
T Consensus 83 riqyA~s~sdi 93 (221)
T KOG4206|consen 83 RIQYAKSDSDI 93 (221)
T ss_pred heecccCccch
Confidence 99999877643
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.01 E-value=8.4e-10 Score=94.83 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccC-CCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGS-GEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....-+||..+|..+.+.+|..+|..| |.|..+++-|++.||.++|||||+|.+++.|.-|-+.||.. |.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3356789999999999999999999998 78999999999999999999999999999999999999887 788888888
Q ss_pred ecc
Q 013270 181 LAS 183 (446)
Q Consensus 181 ~~~ 183 (446)
...
T Consensus 126 vmp 128 (214)
T KOG4208|consen 126 VMP 128 (214)
T ss_pred EeC
Confidence 753
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.00 E-value=1.5e-09 Score=100.94 Aligned_cols=175 Identities=15% Similarity=0.174 Sum_probs=129.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
..+...|-.++|||..++.+|..+|.-.-...--+.+.....|+..|++.|.|.+.|.-+.|++.....+.+|.|.|-.+
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka 136 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKA 136 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeecc
Confidence 34556777899999999999999998654333333444445688889999999999999999999888899999998876
Q ss_pred ccCCCCCC------CccCcccccCcceeecCCCCCcccHHHHHHHhccc----CCeeEEEEeecCCCCCceeEEEEEeCC
Q 013270 183 SVGPTGPG------VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERF----GEIETGPIGFDITTGKSRGFAIFVYKT 252 (446)
Q Consensus 183 ~~~~~~~~------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~V~~v~i~~d~~~g~~kG~afV~F~~ 252 (446)
.....-.. ....-......-.|.+++||+++++.|+.++|.+. |.++.|-+++. .+|+..|-|||.|..
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFAC 215 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecC
Confidence 53321110 00011112335678889999999999999999742 34455555544 479999999999999
Q ss_pred HHHHHHHHHhCCCcccCeEEEEEEcc
Q 013270 253 VEGARKALEEPQKMFEGHQLQCQKAA 278 (446)
Q Consensus 253 ~~~A~~Ai~~~~~~~~Gr~l~v~~a~ 278 (446)
+++|..||......++-|-|.+-++.
T Consensus 216 ee~aq~aL~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 216 EEDAQFALRKHRQNIGQRYIELFRST 241 (508)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 99999999987766777777765554
No 119
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.99 E-value=8.1e-10 Score=77.64 Aligned_cols=55 Identities=31% Similarity=0.498 Sum_probs=48.0
Q ss_pred HHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 123 LLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 123 L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
|+++|++||+|..|.+..+. +++|||+|.+.++|..|+..+++. +.|+.|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997553 689999999999999999988765 99999999875
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.2e-09 Score=100.72 Aligned_cols=78 Identities=23% Similarity=0.399 Sum_probs=70.4
Q ss_pred ccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC-C-CcccCeEEE
Q 013270 196 AAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP-Q-KMFEGHQLQ 273 (446)
Q Consensus 196 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~-~-~~~~Gr~l~ 273 (446)
.+...-.+|||++|...+++.||+++|-+||+|.+|+++.. +++|||+|.+.++|+.|.+.. + ..|+|++|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 34566789999999999999999999999999999999876 679999999999999998776 4 569999999
Q ss_pred EEEccc
Q 013270 274 CQKAAE 279 (446)
Q Consensus 274 v~~a~~ 279 (446)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 121
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.89 E-value=3.7e-09 Score=102.89 Aligned_cols=82 Identities=17% Similarity=0.345 Sum_probs=76.4
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
...++|||.+|...+...||+.+|++||.|+-.+|+.+..+...++|+||++.+.++|.+||..|+ ++|+||.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 346899999999999999999999999999999999998888889999999999999999999999 8899999999998
Q ss_pred ccC
Q 013270 278 AEG 280 (446)
Q Consensus 278 ~~~ 280 (446)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 743
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.87 E-value=3.5e-09 Score=106.82 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=74.0
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
..++||||+.|+..+++.||..+|+.||+|.+|.+... +|||||++....+|.+|+.+|+ ..+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 35699999999999999999999999999999988655 8999999999999999999998 7799999999999
Q ss_pred ccCCCCC
Q 013270 278 AEGKNRT 284 (446)
Q Consensus 278 ~~~~~~~ 284 (446)
.-+..+.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 9887666
No 123
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.87 E-value=6.3e-08 Score=90.07 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=129.0
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 103 DVSQRKIFVHGLGWD-TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
....+.+.|-+|... ++-+.|..+|-.||.|+.|++++.+ .|-|.|++.+...+++|+..++.. +.|.+|.|+
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 346789999999876 7788899999999999999999876 258999999999999999999755 899999998
Q ss_pred ecccCCCCCC---------------------------CccCcccccCcceeecCCCCCcccHHHHHHHhcccCC-eeEEE
Q 013270 181 LASVGPTGPG---------------------------VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE-IETGP 232 (446)
Q Consensus 181 ~~~~~~~~~~---------------------------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~v~ 232 (446)
.+...-..+. .........++++|..-|.|..+||+.|..+|...+. -.+|+
T Consensus 359 ~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svk 438 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVK 438 (494)
T ss_pred eccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEE
Confidence 7653321110 0011122456789999999999999999999997653 35577
Q ss_pred EeecCCCCCceeEEEEEeCCHHHHHHHHHhCCC-cccC------eEEEEEEcccC
Q 013270 233 IGFDITTGKSRGFAIFVYKTVEGARKALEEPQK-MFEG------HQLQCQKAAEG 280 (446)
Q Consensus 233 i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~-~~~G------r~l~v~~a~~~ 280 (446)
|+.-+ +-+ .--+.++|++.++|..||..+|+ .|.+ -.|++.|+.++
T Consensus 439 vFp~k-ser-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 439 VFPLK-SER-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred eeccc-ccc-cccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 76553 222 23589999999999999999983 3543 34555555443
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=2e-09 Score=110.30 Aligned_cols=163 Identities=18% Similarity=0.260 Sum_probs=130.6
Q ss_pred ccCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccce
Q 013270 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMAS 178 (446)
Q Consensus 100 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~ 178 (446)
.++....++||++||+..+++.+|+..|..+|.|.+|.|-+-+ -+.-.-|+||.|.+...+..|+..+... |....++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 4556678999999999999999999999999999999987653 3455569999999999999998887655 3222333
Q ss_pred eeecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHH
Q 013270 179 CQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258 (446)
Q Consensus 179 v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~ 258 (446)
+.+.. ......+.++|++|..++....|...|..||.|..|.+- .| --|++|.|.+...+..
T Consensus 445 ~glG~------------~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hg--q~yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 445 IGLGQ------------PKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HG--QPYAYIQYESPPAAQA 506 (975)
T ss_pred ccccc------------cccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cC--CcceeeecccCccchh
Confidence 32221 025667899999999999999999999999999987663 23 3499999999999999
Q ss_pred HHHhCC-CcccC--eEEEEEEcccCC
Q 013270 259 ALEEPQ-KMFEG--HQLQCQKAAEGK 281 (446)
Q Consensus 259 Ai~~~~-~~~~G--r~l~v~~a~~~~ 281 (446)
|+..|. .-|+| +.|.|.|+.+..
T Consensus 507 a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred hHHHHhcCcCCCCCcccccccccCCC
Confidence 999987 44665 789999987654
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=7.6e-09 Score=95.47 Aligned_cols=77 Identities=26% Similarity=0.412 Sum_probs=67.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcC-CCc-ccCcccee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP-QRK-VNNRMASC 179 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~-~~~-~~g~~i~v 179 (446)
.+...++|||++|-..++|.+|+++|.+||+|++++++.. ++||||+|.+.++|+.|..+. +.. ++|++|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3456799999999889999999999999999999999754 359999999999999999876 433 89999999
Q ss_pred eeccc
Q 013270 180 QLASV 184 (446)
Q Consensus 180 ~~~~~ 184 (446)
.|...
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99865
No 126
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.69 E-value=4.5e-08 Score=88.60 Aligned_cols=83 Identities=23% Similarity=0.429 Sum_probs=76.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
.....+|+|.|||+.++++||+++|..||.++.+-|.+| ..|.+.|.|-|.|...++|..|++.++ ..++|+.|.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 455688999999999999999999999999999999999 589999999999999999999999999 669999999998
Q ss_pred cccCC
Q 013270 277 AAEGK 281 (446)
Q Consensus 277 a~~~~ 281 (446)
.....
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 76554
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.66 E-value=5.9e-08 Score=87.81 Aligned_cols=82 Identities=22% Similarity=0.345 Sum_probs=73.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.+....+|+|.|||+.++++||+++|+.||.+..+-|-.++ .|++.|.|-|.|...++|..|++.++.. ++|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 34456899999999999999999999999999999998885 8999999999999999999999999877 999998887
Q ss_pred eccc
Q 013270 181 LASV 184 (446)
Q Consensus 181 ~~~~ 184 (446)
....
T Consensus 158 ~i~~ 161 (243)
T KOG0533|consen 158 IISS 161 (243)
T ss_pred EecC
Confidence 7653
No 128
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.62 E-value=3.6e-08 Score=87.31 Aligned_cols=80 Identities=29% Similarity=0.469 Sum_probs=72.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
+.+..+||++.|..+++++.|...|.+|-.....++++|+.||+++||+||.|.+..++..|+.++++. ++.|.|++..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 345689999999999999999999999999999999999999999999999999999999999999877 6777777664
Q ss_pred c
Q 013270 182 A 182 (446)
Q Consensus 182 ~ 182 (446)
+
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 4
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.62 E-value=7.6e-08 Score=96.12 Aligned_cols=174 Identities=11% Similarity=0.010 Sum_probs=131.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeecc
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~ 183 (446)
.+.+.+-+++.+.+.+..|+++||... .|..+.|..+...+...|-++|.|....++.+|++..+..+-.|.+.+..+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 345677788999999999999999754 4566666666655556899999999999999999987777777777776442
Q ss_pred cCCCC------------CC------------Ccc-----CcccccCcceeecCCCCCcccHHHHHHHhcccCCeeE-EEE
Q 013270 184 VGPTG------------PG------------VKE-----QGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIET-GPI 233 (446)
Q Consensus 184 ~~~~~------------~~------------~~~-----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~i 233 (446)
..... .. ... .........+|||..||..+++.++.++|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 21100 00 000 0011234579999999999999999999999888888 666
Q ss_pred eecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEccc
Q 013270 234 GFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAE 279 (446)
Q Consensus 234 ~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~ 279 (446)
-+. -+++.++.|||.|..++++..|...-+ +.++-|.|+|.-...
T Consensus 468 t~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 468 TRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred ccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 555 478889999999999999999888877 567778888876543
No 130
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.61 E-value=6.7e-08 Score=94.53 Aligned_cols=78 Identities=24% Similarity=0.328 Sum_probs=67.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
...+|||+|||.+++.++|+++|..||.|+...|......++..+||||+|.+.+++..||.+....+.++.+.|+.-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 345699999999999999999999999999998877654455559999999999999999999867788898888753
No 131
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.58 E-value=1.2e-07 Score=92.68 Aligned_cols=81 Identities=25% Similarity=0.455 Sum_probs=70.0
Q ss_pred cceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEcccC
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a~~~ 280 (446)
...|||+|||.+++.++|+++|..||.|+..+|......++..+||||+|.+.+++..||.+.-..|++++|.|.-.+..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 34599999999999999999999999999988876533355559999999999999999999877899999999986654
Q ss_pred C
Q 013270 281 K 281 (446)
Q Consensus 281 ~ 281 (446)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=7.4e-08 Score=94.48 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=116.6
Q ss_pred ccCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccce
Q 013270 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMAS 178 (446)
Q Consensus 100 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~ 178 (446)
.+.+...++|+|-|||.++++++|..+|+.||+|+.|+.- -..+|.+||+|-+.-+|+.|+++++.. +.|+.|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3446678999999999999999999999999999997753 345789999999999999999999865 8888887
Q ss_pred eeecccCCCCCCCc------------cCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEE
Q 013270 179 CQLASVGPTGPGVK------------EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFA 246 (446)
Q Consensus 179 v~~~~~~~~~~~~~------------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~a 246 (446)
+............. ......-....+|+ .|+...+..-++.+|+-+|.+.. + +++.-+..-
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~-----~~~~~~hq~ 216 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-R-----ETPLLNHQR 216 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-c-----cccchhhhh
Confidence 33221111100000 00000111223333 38888888888888888888764 2 234334467
Q ss_pred EEEeCCHHHHHHHHHhCCCcccCeEEEEEEccc
Q 013270 247 IFVYKTVEGARKALEEPQKMFEGHQLQCQKAAE 279 (446)
Q Consensus 247 fV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a~~ 279 (446)
|+.|.+..++..++..+...+.+....+.++.+
T Consensus 217 ~~~~~~~~s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 217 FVEFADNRSYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhccccchhhcccCCceecCCCCceEEecCC
Confidence 899999998866665443456667777777766
No 133
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=1.6e-07 Score=85.28 Aligned_cols=86 Identities=20% Similarity=0.335 Sum_probs=77.9
Q ss_pred ccCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCcccee
Q 013270 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASC 179 (446)
Q Consensus 100 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v 179 (446)
...+.+.+.+||+|+.+.+|.+++...|+.||.|..|.|..|+..+.++||+||+|.+.+.+..+|......|.++.|.|
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 45567889999999999999999999999999999999999999999999999999999999999995556699999999
Q ss_pred eecccC
Q 013270 180 QLASVG 185 (446)
Q Consensus 180 ~~~~~~ 185 (446)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 876544
No 134
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.53 E-value=1.6e-07 Score=85.23 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=77.7
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
......+||+|+.+.+|.+++..+|+.||.|..+.|+.|+.++.++||+||+|.+.+.+..|+. |+ ..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 6677899999999999999999999999999999999999999999999999999999999999 77 889999999999
Q ss_pred cccCC
Q 013270 277 AAEGK 281 (446)
Q Consensus 277 a~~~~ 281 (446)
.....
T Consensus 177 ~r~~~ 181 (231)
T KOG4209|consen 177 KRTNV 181 (231)
T ss_pred eeeec
Confidence 87663
No 135
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.49 E-value=8e-07 Score=82.08 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=68.0
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccC--CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFG--EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G--~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
....++||+||-|.+|++||.+.+...| .+.+++++.++..|.+||||+|...+..+..+.++.|- +.|+|..-.|-
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3456899999999999999999998876 56778889999999999999999999999999999998 77999666554
Q ss_pred Ec
Q 013270 276 KA 277 (446)
Q Consensus 276 ~a 277 (446)
-.
T Consensus 158 ~~ 159 (498)
T KOG4849|consen 158 SY 159 (498)
T ss_pred cc
Confidence 43
No 136
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.47 E-value=8.6e-07 Score=68.71 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=67.6
Q ss_pred ceeecCCCCCcccHHHHHHHhccc--CCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Ccc----cCeEEEE
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERF--GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMF----EGHQLQC 274 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~--G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~----~Gr~l~v 274 (446)
+||.|+|||...|.++|.+++... |....+.++.|..++.+.|||||.|.+++.|.+-.+.++ ..+ ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998763 788889999999999999999999999999999998887 333 3477788
Q ss_pred EEccc
Q 013270 275 QKAAE 279 (446)
Q Consensus 275 ~~a~~ 279 (446)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88854
No 137
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.47 E-value=7.4e-07 Score=82.48 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=72.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeE--------EEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Cccc
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIET--------GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFE 268 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~ 268 (446)
...+..|||.|||.++|.+++.++|++||.|.. |+|.++ ..|+.+|=|+|.|-..+++..|++.|+ ..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 345677999999999999999999999998754 677777 459999999999999999999999999 7899
Q ss_pred CeEEEEEEccc
Q 013270 269 GHQLQCQKAAE 279 (446)
Q Consensus 269 Gr~l~v~~a~~ 279 (446)
|+.|+|..|+=
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999999873
No 138
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.43 E-value=8.6e-08 Score=89.75 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=121.7
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCC---CCccceEEEEEccHHHHHHHHHcCCCcccCccceeeecc
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVT---GKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~---g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~ 183 (446)
..|-|.||.+.+|.+++..||...|.|.+++|+.+..+ ......|||.|.+...+..|-...|..|-++.|.|....
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 48899999999999999999999999999999864322 234568999999999999998888888888888887553
Q ss_pred cCCCCCC------------------C------------ccCc----------------ccccCcceeecCCCCCcccHHH
Q 013270 184 VGPTGPG------------------V------------KEQG----------------AAAQGERKIYVSNVPRDVEKEK 217 (446)
Q Consensus 184 ~~~~~~~------------------~------------~~~~----------------~~~~~~~~l~V~nLp~~~te~~ 217 (446)
....... . .... ....-.++|+|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 2211100 0 0000 0011237899999999999999
Q ss_pred HHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCccc
Q 013270 218 LRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFE 268 (446)
Q Consensus 218 L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~ 268 (446)
+.+.|..+|+|.+.++- .+-..-+|-|+|....+...|+..++..+.
T Consensus 168 ~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 99999999999987763 344456788999999999999999885544
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=3e-07 Score=90.27 Aligned_cols=71 Identities=25% Similarity=0.439 Sum_probs=64.5
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~ 273 (446)
....++|+|-|||..+++++|+.+|+.||+|..|+- +-..+|.+||+|.|..+|++|++.|+ ..+.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 567889999999999999999999999999998644 45559999999999999999999999 789999888
No 140
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.41 E-value=6.8e-07 Score=89.49 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=64.7
Q ss_pred ceeecCCCCCcccHHHHHHHhcccCCeeE-EEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFGEIET-GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
+.|-+.|+|++++-+||.++|..|-.+-. |++-+. +.|...|-|.|-|++.++|.+|...++ ..|..|.|.|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 58899999999999999999999965544 555444 789999999999999999999999998 779999998864
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.37 E-value=1.6e-06 Score=67.16 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=57.5
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccC--CCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGS--GEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK 171 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~ 171 (446)
+||.|+|||...|.++|.+++... |..--+.+..|..++.+.|||||.|.+++.|.+..+..++.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 799999999999999999988763 56667888889889999999999999999999999887543
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.37 E-value=6.1e-08 Score=91.52 Aligned_cols=151 Identities=20% Similarity=0.321 Sum_probs=118.5
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc--ccCccceeeeccc
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK--VNNRMASCQLASV 184 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~--~~g~~i~v~~~~~ 184 (446)
..|||+||.+.++.+||..+|...-.-.+-.++. -.||+||.+.+...|.+|++.++++ +.|.++.+.....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999998652111111111 2369999999999999999999765 8899988876542
Q ss_pred CCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEe-ecCCCCCceeEEEEEeCCHHHHHHHHHhC
Q 013270 185 GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIG-FDITTGKSRGFAIFVYKTVEGARKALEEP 263 (446)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-~d~~~g~~kG~afV~F~~~~~A~~Ai~~~ 263 (446)
+ ....+++-|+|+|.....+-|..++..||.|+.|..+ .|.+ .-..-|+|.+.+.+..||..+
T Consensus 76 k------------kqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl 139 (584)
T KOG2193|consen 76 K------------KQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKL 139 (584)
T ss_pred H------------HHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhh
Confidence 2 3345679999999999999999999999999998653 3332 223458899999999999999
Q ss_pred C-CcccCeEEEEEEccc
Q 013270 264 Q-KMFEGHQLQCQKAAE 279 (446)
Q Consensus 264 ~-~~~~Gr~l~v~~a~~ 279 (446)
+ ..+....+.|.|--.
T Consensus 140 ~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 140 NGPQLENQHLKVGYIPD 156 (584)
T ss_pred cchHhhhhhhhcccCch
Confidence 8 668888888888643
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=2.7e-07 Score=80.02 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=68.5
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||.|+-..++++-|.++|-+.|.|..|.|+.++ .++.+ ||||.|.++.++..|++.+| ..+.++.|.|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4456899999999999999999999999999999998874 56667 99999999999999999999 558787777765
Q ss_pred c
Q 013270 277 A 277 (446)
Q Consensus 277 a 277 (446)
-
T Consensus 84 r 84 (267)
T KOG4454|consen 84 R 84 (267)
T ss_pred c
Confidence 3
No 144
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.28 E-value=4.5e-06 Score=72.77 Aligned_cols=92 Identities=21% Similarity=0.319 Sum_probs=72.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEe-ecCCCCCceeEEEEEeCCHHHHHHHHHhCCCc-c---cCeEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIG-FDITTGKSRGFAIFVYKTVEGARKALEEPQKM-F---EGHQL 272 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~-~---~Gr~l 272 (446)
...-++|||.+||.++...+|..+|..|-.-+.+.|- .++...-++-+|||+|.+..+|..|+..||.+ | .+..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 4457999999999999999999999999766665553 33333445689999999999999999999943 4 57899
Q ss_pred EEEEcccCCCCCCCCCC
Q 013270 273 QCQKAAEGKNRTSSNSS 289 (446)
Q Consensus 273 ~v~~a~~~~~~~~~~~~ 289 (446)
+|.+|+...++......
T Consensus 111 hiElAKSNtK~kr~k~s 127 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGS 127 (284)
T ss_pred EeeehhcCcccccCCCC
Confidence 99999877665555433
No 145
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=7.5e-08 Score=98.62 Aligned_cols=166 Identities=20% Similarity=0.168 Sum_probs=129.6
Q ss_pred CCCCeEEEeCCCCCCCHH-HHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQE-SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~-~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
...+...+.++.+..... ..+..|..+|.|+.|++......-...-+.++.+....+++.|.....+.+.++.+.|..+
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCC
Confidence 345667788887776666 5788999999999999865322222223899999999999999998888899988888776
Q ss_pred ccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHh
Q 013270 183 SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262 (446)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~ 262 (446)
....................++||.||+..+.+.||...|..+|.|..++|.....+++.+|+|||.|..++.+.+||..
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 65443322222223334567899999999999999999999999999888876667899999999999999999999988
Q ss_pred CCCcccC
Q 013270 263 PQKMFEG 269 (446)
Q Consensus 263 ~~~~~~G 269 (446)
....+.|
T Consensus 729 ~d~~~~g 735 (881)
T KOG0128|consen 729 RDSCFFG 735 (881)
T ss_pred hhhhhhh
Confidence 8755555
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.24 E-value=1.9e-06 Score=86.67 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=71.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeC---CCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccce
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDK---VTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMAS 178 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~---~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~ 178 (446)
+...++|||+||++.++++.|...|..||+|.+|+|+.-+ +..+.+-|+||.|.+..+|++|++.+++. +.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 5667899999999999999999999999999999998654 22356679999999999999999999766 8888899
Q ss_pred eeeccc
Q 013270 179 CQLASV 184 (446)
Q Consensus 179 v~~~~~ 184 (446)
+.|...
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 888753
No 147
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.19 E-value=1.2e-06 Score=77.68 Aligned_cols=72 Identities=19% Similarity=0.476 Sum_probs=65.0
Q ss_pred ceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccC
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
..+||++||+.+.+.||.++|..||.|..|.+. .||+||+|.+..+|..|+..++ .+|+|-.+.|.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 468999999999999999999999999988774 6799999999999999999999 7788877999999864
Q ss_pred C
Q 013270 281 K 281 (446)
Q Consensus 281 ~ 281 (446)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 3
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.09 E-value=6.8e-06 Score=82.82 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=73.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCC---CCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDIT---TGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~---~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~ 273 (446)
....++|||+||+..++++.|...|..||.|..|+|+.-+. ..+.+.++||-|-+..+|++|++.|+ .++.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 55678999999999999999999999999999999987532 34557799999999999999999999 679999999
Q ss_pred EEEcccCC
Q 013270 274 CQKAAEGK 281 (446)
Q Consensus 274 v~~a~~~~ 281 (446)
+-|++.-.
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99996443
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.08 E-value=1.4e-05 Score=58.99 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=47.9
Q ss_pred CCeEEEeCCCCCCCHHH----HHHhhccCC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCcccee
Q 013270 106 QRKIFVHGLGWDTTQES----LLSAFGGSG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASC 179 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~----L~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v 179 (446)
...|||.|||.+.+... |+.++..|| .|.+|. .+.|+|.|.+.+.|.+|.+.++++ +.|+.|.|
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 35799999999988765 456777887 676551 257999999999999999999876 99999999
Q ss_pred eeccc
Q 013270 180 QLASV 184 (446)
Q Consensus 180 ~~~~~ 184 (446)
.+...
T Consensus 72 ~~~~~ 76 (90)
T PF11608_consen 72 SFSPK 76 (90)
T ss_dssp ESS--
T ss_pred EEcCC
Confidence 98743
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.93 E-value=1.6e-05 Score=63.23 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=43.8
Q ss_pred ceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-C-----cccCeEEEEE
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-K-----MFEGHQLQCQ 275 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~-----~~~Gr~l~v~ 275 (446)
+.|+|.+++..++.++|++.|+.||.|.+|.+.+. ...|||.|.+.+.|..|+..+. . .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 56889999999999999999999999999988654 3479999999999999998775 3 3556555554
Q ss_pred E
Q 013270 276 K 276 (446)
Q Consensus 276 ~ 276 (446)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.88 E-value=1.1e-05 Score=75.63 Aligned_cols=85 Identities=26% Similarity=0.313 Sum_probs=76.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeE--------EEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Cccc
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIET--------GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFE 268 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~ 268 (446)
.....+|||-+||..+++++|.++|.++|.|.. |.|-+|++|+++||-|.|+|.+...|+.||.-++ ..|+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 556789999999999999999999999998753 6778899999999999999999999999999998 7799
Q ss_pred CeEEEEEEcccCCC
Q 013270 269 GHQLQCQKAAEGKN 282 (446)
Q Consensus 269 Gr~l~v~~a~~~~~ 282 (446)
|..|+|.++..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999876653
No 152
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.69 E-value=2.9e-05 Score=71.97 Aligned_cols=78 Identities=21% Similarity=0.417 Sum_probs=66.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCC--CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCcccee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSG--EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASC 179 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v 179 (446)
+-....+||+||-|.+|++||.+.+...| .+.+++++.++.+|.+||||+|...+..++.+.++.+.. +|+|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 33456799999999999999999998877 788899999999999999999999999999999998864 488865444
Q ss_pred e
Q 013270 180 Q 180 (446)
Q Consensus 180 ~ 180 (446)
.
T Consensus 157 ~ 157 (498)
T KOG4849|consen 157 L 157 (498)
T ss_pred e
Confidence 3
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.65 E-value=5.5e-05 Score=71.01 Aligned_cols=84 Identities=25% Similarity=0.238 Sum_probs=74.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCee--------EEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-cc
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIE--------ECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VN 173 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~ 173 (446)
.....+|||-+||..+++++|.++|..||.|. .|.|.+|++|++.||-|.|.|.+...|+.|+.-+... +.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44568999999999999999999999999775 4778899999999999999999999999999998755 99
Q ss_pred CccceeeecccCC
Q 013270 174 NRMASCQLASVGP 186 (446)
Q Consensus 174 g~~i~v~~~~~~~ 186 (446)
+..|+|..+....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999888775443
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.65 E-value=0.00011 Score=54.28 Aligned_cols=69 Identities=22% Similarity=0.345 Sum_probs=46.7
Q ss_pred ceeecCCCCCcccHHH----HHHHhcccC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 202 RKIYVSNVPRDVEKEK----LRGFFERFG-EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~----L~~~F~~~G-~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
..|||.|||.+.+... |+.++.-|| .|..| . .+.|+|.|.+.+.|.+|.+.|+ ..+.|+.|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999877654 556777775 56543 1 4679999999999999999998 55999999999
Q ss_pred EcccC
Q 013270 276 KAAEG 280 (446)
Q Consensus 276 ~a~~~ 280 (446)
|....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98443
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.50 E-value=0.00017 Score=66.80 Aligned_cols=80 Identities=15% Similarity=0.338 Sum_probs=60.2
Q ss_pred CCCCeEEEeCCCCCCCHHHH------HHhhccCCCeeEEEEEeeCCC-CCccce--EEEEEccHHHHHHHHHcCCCc-cc
Q 013270 104 VSQRKIFVHGLGWDTTQESL------LSAFGGSGEIEECKLVIDKVT-GKAKGF--AFIVFKTRKAAVKALKNPQRK-VN 173 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L------~~~F~~~G~v~~v~i~~~~~~-g~~~G~--afV~f~~~~~A~~Al~~~~~~-~~ 173 (446)
...+-|||-+||+.+..+++ .++|.+||.|..|.|-+...+ ....+. .||+|.+.++|.+||...++. ++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34567999999999877762 479999999987766433211 112232 399999999999999998776 89
Q ss_pred Cccceeeecc
Q 013270 174 NRMASCQLAS 183 (446)
Q Consensus 174 g~~i~v~~~~ 183 (446)
||.|+..+..
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 9999988754
No 156
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.48 E-value=8.4e-05 Score=70.04 Aligned_cols=78 Identities=29% Similarity=0.476 Sum_probs=68.7
Q ss_pred CCeEE-EeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeecc
Q 013270 106 QRKIF-VHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183 (446)
Q Consensus 106 ~~~l~-V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~ 183 (446)
..++| |++|+.++++++|+.+|..+|.|..+++..++.++.++||+||.|.....+..++..-...+.++.+.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 34455 9999999999999999999999999999999999999999999999999999999883344888888877654
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.47 E-value=0.00024 Score=56.43 Aligned_cols=56 Identities=30% Similarity=0.367 Sum_probs=37.4
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~ 168 (446)
+.|+|.+++..++.++|+++|+.||.|..|.+.+. . --|||.|.+++.|++|+..+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G----~--~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG----D--TEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC----C--CEEEEEECCcchHHHHHHHH
Confidence 57899999999999999999999999999888543 2 26999999999999999875
No 158
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.47 E-value=0.00022 Score=63.76 Aligned_cols=72 Identities=10% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCC--------CCccce----EEEEEccHHHHHHHHHcCCCc-
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVT--------GKAKGF----AFIVFKTRKAAVKALKNPQRK- 171 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~--------g~~~G~----afV~f~~~~~A~~Al~~~~~~- 171 (446)
....||+++||+.++-..|+++|+.||.|-.|.|-....+ |.++.+ |+|+|.+...|.++...+|..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5688999999999999999999999999999988766544 233332 679999999999999998766
Q ss_pred ccCcc
Q 013270 172 VNNRM 176 (446)
Q Consensus 172 ~~g~~ 176 (446)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77765
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.40 E-value=0.00028 Score=63.22 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=81.1
Q ss_pred HHHHHHcCCCc-ccCccceeeecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCC
Q 013270 161 AVKALKNPQRK-VNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT 239 (446)
Q Consensus 161 A~~Al~~~~~~-~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~ 239 (446)
|..|-..++.. ..++.+.|.++. ...|||.||...++.|.|.+.|+.||.|+...+..| ..
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~-----------------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r 68 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAM-----------------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DR 68 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeec-----------------cceEEEEecchhhhhHHHHHhhhhcCccchheeeec-cc
Confidence 45555566555 789999999874 168999999999999999999999999999877777 57
Q ss_pred CCceeEEEEEeCCHHHHHHHHHhCC-----CcccCeEEEEEEcc
Q 013270 240 GKSRGFAIFVYKTVEGARKALEEPQ-----KMFEGHQLQCQKAA 278 (446)
Q Consensus 240 g~~kG~afV~F~~~~~A~~Ai~~~~-----~~~~Gr~l~v~~a~ 278 (446)
++..+-++|.|...-.|.+|+...+ ....+++..|....
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 8899999999999999999998875 23455666665543
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.38 E-value=0.00013 Score=69.82 Aligned_cols=67 Identities=30% Similarity=0.294 Sum_probs=58.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeec---CCCC--Cc--------eeEEEEEeCCHHHHHHHHHhCC
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFD---ITTG--KS--------RGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d---~~~g--~~--------kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
....++|.+.|||.+-.-+-|.+||..||.|..|+|+.- +.+. .+ +-+|||+|...+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 457899999999999999999999999999999999875 3322 11 5579999999999999999996
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.36 E-value=0.00032 Score=65.01 Aligned_cols=83 Identities=20% Similarity=0.391 Sum_probs=64.6
Q ss_pred cCcceeecCCCCCcccHHH----H--HHHhcccCCeeEEEEeecCCCCCc-eeE--EEEEeCCHHHHHHHHHhCC-Cccc
Q 013270 199 QGERKIYVSNVPRDVEKEK----L--RGFFERFGEIETGPIGFDITTGKS-RGF--AIFVYKTVEGARKALEEPQ-KMFE 268 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~----L--~~~F~~~G~V~~v~i~~d~~~g~~-kG~--afV~F~~~~~A~~Ai~~~~-~~~~ 268 (446)
....-+||-+|+..+..|+ | .++|.+||.|..|.|-+......+ .+. .||+|.+.++|.+||...+ ..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456789999998877666 2 479999999999888665322221 222 4999999999999999999 7799
Q ss_pred CeEEEEEEcccCC
Q 013270 269 GHQLQCQKAAEGK 281 (446)
Q Consensus 269 Gr~l~v~~a~~~~ 281 (446)
||.|+..|...+-
T Consensus 192 Gr~lkatYGTTKY 204 (480)
T COG5175 192 GRVLKATYGTTKY 204 (480)
T ss_pred CceEeeecCchHH
Confidence 9999999988663
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.35 E-value=0.00073 Score=52.84 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=52.7
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEE-EeecC------CCCCceeEEEEEeCCHHHHHHHHHhCCCcccCe-
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGP-IGFDI------TTGKSRGFAIFVYKTVEGARKALEEPQKMFEGH- 270 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~-i~~d~------~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr- 270 (446)
...+.|.|-+.|.. ....|.+.|++||+|.+.. +.++. .......+..|+|+++.+|.+||......|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 34567888899988 4456779999999998764 11110 001225689999999999999999988888885
Q ss_pred EEEEEEccc
Q 013270 271 QLQCQKAAE 279 (446)
Q Consensus 271 ~l~v~~a~~ 279 (446)
.+-|.+.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 455777743
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.28 E-value=0.00024 Score=67.99 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=59.9
Q ss_pred cCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEee---CCCCC----------ccceEEEEEccHHHHHHHHHc
Q 013270 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVID---KVTGK----------AKGFAFIVFKTRKAAVKALKN 167 (446)
Q Consensus 101 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~---~~~g~----------~~G~afV~f~~~~~A~~Al~~ 167 (446)
..+..+++|.+.|||.+-.-+.|.++|+.||.|..|+|..- +.+.+ .+-||||+|...+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34467899999999999999999999999999999999865 33322 356899999999999999999
Q ss_pred CCCc
Q 013270 168 PQRK 171 (446)
Q Consensus 168 ~~~~ 171 (446)
++..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 8644
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.27 E-value=0.0005 Score=47.19 Aligned_cols=52 Identities=31% Similarity=0.401 Sum_probs=41.1
Q ss_pred ceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHH
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai 260 (446)
+.|-|.+.+....+ +++.+|..||+|..+.+... .-+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 45778888866664 45568889999999888522 558999999999999985
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.25 E-value=0.00053 Score=47.07 Aligned_cols=52 Identities=31% Similarity=0.426 Sum_probs=41.8
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHH
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKAL 165 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al 165 (446)
+.|-|.+.+.+..+ ++..+|..||+|..+.+-. ..-+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 67889999977664 4556889999999988741 2238999999999999985
No 166
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.14 E-value=0.0011 Score=60.49 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=62.1
Q ss_pred cceeecCCC--CCcc---cHHHHHHHhcccCCeeEEEEeecCCCCCce-eEEEEEeCCHHHHHHHHHhCC-CcccCeEEE
Q 013270 201 ERKIYVSNV--PRDV---EKEKLRGFFERFGEIETGPIGFDITTGKSR-GFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273 (446)
Q Consensus 201 ~~~l~V~nL--p~~~---te~~L~~~F~~~G~V~~v~i~~d~~~g~~k-G~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~ 273 (446)
++.|.++|+ +-.+ -++++++.+++||.|..|.|+.++..-... -..||+|...++|.+|+-.|| .+|+||.+.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 344566665 2223 356889999999999999998875433332 248999999999999999999 789999999
Q ss_pred EEEcccCC
Q 013270 274 CQKAAEGK 281 (446)
Q Consensus 274 v~~a~~~~ 281 (446)
..|.+..+
T Consensus 361 A~Fyn~ek 368 (378)
T KOG1996|consen 361 ACFYNLEK 368 (378)
T ss_pred heeccHHh
Confidence 98876544
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.00075 Score=66.80 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=58.4
Q ss_pred CCCCeEEEeCCCCCC--CH----HHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-cc-Cc
Q 013270 104 VSQRKIFVHGLGWDT--TQ----ESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VN-NR 175 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~--te----~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~-g~ 175 (446)
.....|+|-|+|.-- .. .-|..+|+++|+|..+.+..+..+ .++||.|++|.+..+|..|++.+++. |. .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 456789999999632 22 235678999999999999888654 49999999999999999999998765 43 34
Q ss_pred cceee
Q 013270 176 MASCQ 180 (446)
Q Consensus 176 ~i~v~ 180 (446)
...|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 44443
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0017 Score=64.43 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=60.8
Q ss_pred CcceeecCCCCCc------ccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Cc-ccCeE
Q 013270 200 GERKIYVSNVPRD------VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KM-FEGHQ 271 (446)
Q Consensus 200 ~~~~l~V~nLp~~------~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~-~~Gr~ 271 (446)
-...|+|.|+|-- .-..-|..+|+++|.|..+.++.+. .|.++||.|++|.+..+|..|++.+| +. ...+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3567888888843 2334577899999999999999885 45599999999999999999999998 33 45567
Q ss_pred EEEEEc
Q 013270 272 LQCQKA 277 (446)
Q Consensus 272 l~v~~a 277 (446)
..|..-
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 766543
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.97 E-value=0.0029 Score=49.53 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=51.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEE-EEeeC------CCCCccceEEEEEccHHHHHHHHHcCCCcccCccc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK-LVIDK------VTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMA 177 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~-i~~~~------~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i 177 (446)
..+.|.|-+.|.. ....|.++|++||+|.+.. +.++. .......+-.|+|.++.+|.+||.+++..+.|..+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3577999999988 6677889999999998775 11100 00112348899999999999999998888888654
Q ss_pred e-eeec
Q 013270 178 S-CQLA 182 (446)
Q Consensus 178 ~-v~~~ 182 (446)
. |.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 3 4443
No 170
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0016 Score=64.18 Aligned_cols=64 Identities=25% Similarity=0.269 Sum_probs=59.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhc-cCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHc
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFG-GSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~ 167 (446)
...+|||||+||.-++.++|..+|+ -||-|..+-|=+|++-+-.+|-|-|+|.+..+-.+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4679999999999999999999999 599999999988977889999999999999999999987
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.86 E-value=0.00043 Score=62.16 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=54.3
Q ss_pred HHHHHHhc-ccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCC
Q 013270 216 EKLRGFFE-RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 216 ~~L~~~F~-~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~ 281 (446)
+||...|+ +||+|+.+.|..+ ..-.-+|-++|.|...++|++|+..|| .+|.|++|.+.+.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 56666666 8999999988654 334558899999999999999999999 88999999999986544
No 172
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.81 E-value=0.00063 Score=60.98 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=59.5
Q ss_pred cceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCC--------CCcee----EEEEEeCCHHHHHHHHHhCC-Ccc
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT--------GKSRG----FAIFVYKTVEGARKALEEPQ-KMF 267 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~--------g~~kG----~afV~F~~~~~A~~Ai~~~~-~~~ 267 (446)
.-.||+.+||..++...||++|+.||.|-.|.|-....+ |.++. -|.|+|.+...|..+...|| ..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999999999988765444 33332 37899999999999999998 668
Q ss_pred cCeEE
Q 013270 268 EGHQL 272 (446)
Q Consensus 268 ~Gr~l 272 (446)
+|+.=
T Consensus 154 ggkk~ 158 (278)
T KOG3152|consen 154 GGKKK 158 (278)
T ss_pred CCCCC
Confidence 88653
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.65 E-value=0.0015 Score=65.17 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=65.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhc-ccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC--Cc--ccCeEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFE-RFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ--KM--FEGHQL 272 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~--~~--~~Gr~l 272 (446)
...++.|||.||-.-+|.-+|+.++. .+|.|++..| | +-|-.|||.|.+.++|...+.+|| .+ -+++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 45678999999999999999999999 5677777633 2 226789999999999999999998 33 467999
Q ss_pred EEEEcccCCCC
Q 013270 273 QCQKAAEGKNR 283 (446)
Q Consensus 273 ~v~~a~~~~~~ 283 (446)
.+.|.......
T Consensus 515 ~adf~~~deld 525 (718)
T KOG2416|consen 515 IADFVRADELD 525 (718)
T ss_pred EeeecchhHHH
Confidence 99998765533
No 174
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.52 E-value=0.0032 Score=59.77 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=65.1
Q ss_pred cceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCC---CCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEc
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT---GKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~---g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a 277 (446)
...|.|.||...+|.++++.+|.-.|.|.+++|+..... ....-.|||.|.+...+..|-.+.|+.|-++.|.|..+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 348999999999999999999999999999999764322 23456899999999999999988888877888877765
Q ss_pred c
Q 013270 278 A 278 (446)
Q Consensus 278 ~ 278 (446)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 175
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.28 E-value=0.0031 Score=60.35 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=62.8
Q ss_pred ceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC--CcccCeEEEEEEccc
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ--KMFEGHQLQCQKAAE 279 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~--~~~~Gr~l~v~~a~~ 279 (446)
.++|++||...++..||..+|...-.-..-.++.. .||+||.+.+...|.+|++.++ ..+.|+++.|.++-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 47999999999999999999986511111112222 7899999999999999999998 569999999999988
Q ss_pred CCCCCCC
Q 013270 280 GKNRTSS 286 (446)
Q Consensus 280 ~~~~~~~ 286 (446)
++.+...
T Consensus 76 kkqrsrk 82 (584)
T KOG2193|consen 76 KKQRSRK 82 (584)
T ss_pred HHHHhhh
Confidence 7765443
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.20 E-value=0.027 Score=39.65 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=45.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccC---CCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcC
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGS---GEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~---G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~ 168 (446)
...|+|+++. +++.+||+.+|..| .....|..+-|. .|=|.|.+.+.|.+||..+
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4689999995 58999999999998 134578888775 5889999999999999764
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.11 E-value=0.019 Score=47.80 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=46.1
Q ss_pred HHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEcccCCC
Q 013270 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282 (446)
Q Consensus 216 ~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a~~~~~ 282 (446)
.+|.+.|..||+|.-+|+.-+ .-+|+|.+-.+|.+|+......++|+.|+|+...+.-.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE------
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHH
Confidence 367788999999998888744 47999999999999999888999999999998776543
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.04 E-value=0.0074 Score=60.38 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=59.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhcc-CCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-c---cCcc
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGG-SGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-V---NNRM 176 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~---~g~~ 176 (446)
+...++.|||.||-.-+|.-.|+.++.. +|.|++.+| | +-+-.|||.|.+.++|...+.+|++. + +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3456789999999999999999999995 677877754 3 24458999999999999999998754 3 5566
Q ss_pred ceeeec
Q 013270 177 ASCQLA 182 (446)
Q Consensus 177 i~v~~~ 182 (446)
|.+.+.
T Consensus 514 L~adf~ 519 (718)
T KOG2416|consen 514 LIADFV 519 (718)
T ss_pred eEeeec
Confidence 666654
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.78 E-value=0.0035 Score=56.45 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=49.3
Q ss_pred HHHHHhhc-cCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 121 ESLLSAFG-GSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 121 ~~L~~~F~-~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
+||...|+ +||+|+++.|..+. ...-.|-+||.|..+++|++|+..+|.. +.|++|.+.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444445 89999999776553 4457899999999999999999999765 999999888753
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.66 E-value=0.052 Score=38.26 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=45.0
Q ss_pred CcceeecCCCCCcccHHHHHHHhccc---CCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERF---GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~---G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~ 263 (446)
....|+|+++. +++.+||+.+|..| .....|..+-|. -|-|.|.+.+.|.+||..|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 45689999996 58889999999998 234567776663 4889999999999999865
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.51 E-value=0.041 Score=40.92 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=40.1
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ 169 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~ 169 (446)
...||. .|.++...||.++|+.||.|. |..+-|. .|||...+.+.|..++..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 344555 999999999999999999985 5555443 69999999999999887754
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.45 E-value=0.033 Score=46.37 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=52.4
Q ss_pred CCCCeEEEeCCC------CCCCH---HHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccC
Q 013270 104 VSQRKIFVHGLG------WDTTQ---ESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNN 174 (446)
Q Consensus 104 ~~~~~l~V~nLp------~~~te---~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g 174 (446)
+..-||.|.=+. ..+.+ ++|.+.|..||.|.-||++.+ .-+|+|.+-++|.+|+...+.+++|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETT
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECC
Confidence 345666666555 12332 367778899999888888644 5899999999999999999999999
Q ss_pred ccceeeecccC
Q 013270 175 RMASCQLASVG 185 (446)
Q Consensus 175 ~~i~v~~~~~~ 185 (446)
+.|.|...+..
T Consensus 97 ~~l~i~LKtpd 107 (146)
T PF08952_consen 97 RTLKIRLKTPD 107 (146)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEeCCcc
Confidence 99999876543
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.37 E-value=0.035 Score=50.93 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=49.7
Q ss_pred HHHHHHhhccCCCeeEEEEEeeCCCCCcc-ceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 120 QESLLSAFGGSGEIEECKLVIDKVTGKAK-GFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 120 e~~L~~~F~~~G~v~~v~i~~~~~~g~~~-G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
++++++-+++||.|..|.|...+..-... ---||+|...++|.+|+-.+|+. |.||.+..++.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 45778889999999999998775332222 23799999999999999999866 88888877664
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.36 E-value=0.065 Score=39.89 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=42.7
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
..+....+|. +|..+-..||.++|+.||.|. |..+-| .-|||...+.+.|..|+..+.
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 3445566676 999999999999999999985 444444 269999999999999988876
No 185
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.27 E-value=0.055 Score=44.42 Aligned_cols=73 Identities=23% Similarity=0.321 Sum_probs=57.1
Q ss_pred ccCcceeecCCCCCcc----cHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEE
Q 013270 198 AQGERKIYVSNVPRDV----EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQ 273 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~----te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~ 273 (446)
..+-.+|.|+=|..++ +-..+...++.||+|.+|.++ | +--|.|.|.+..+|-+|+.++....-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 4556788887665554 334455566789999998774 2 3469999999999999999999888899999
Q ss_pred EEEc
Q 013270 274 CQKA 277 (446)
Q Consensus 274 v~~a 277 (446)
|+|-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 9985
No 186
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.14 E-value=0.021 Score=51.48 Aligned_cols=62 Identities=24% Similarity=0.297 Sum_probs=56.5
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ 169 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~ 169 (446)
..|||.||..-++.+.|...|+.||+|....++.| ..++..+-++|.|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 78999999999999999999999999988777777 468889999999999999999999873
No 187
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.88 E-value=0.074 Score=53.11 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=59.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhcc--CCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC---CcccCcc
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGG--SGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ---RKVNNRM 176 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~--~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~---~~~~g~~ 176 (446)
.....|.|+|+.||.++-.++|+.||.. |-.+.+|.+-.+. -=||+|.+..||+.|.+.+. .+|.|+.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3456788999999999999999999975 7788899886553 36899999999999999874 3488887
Q ss_pred ceeee
Q 013270 177 ASCQL 181 (446)
Q Consensus 177 i~v~~ 181 (446)
|...+
T Consensus 244 ImARI 248 (684)
T KOG2591|consen 244 IMARI 248 (684)
T ss_pred hhhhh
Confidence 75544
No 188
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.73 E-value=0.084 Score=52.74 Aligned_cols=71 Identities=11% Similarity=0.250 Sum_probs=58.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcc--cCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC---CcccCeEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFER--FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ---KMFEGHQL 272 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~--~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~---~~~~Gr~l 272 (446)
....|.|.|+-||.++-.|+|+.||.. |-.+.+|.+-.+ . -=||+|++..+|..|.+.|. ++|.|++|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------~-nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------D-NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------C-ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 334677889999999999999999985 778888877554 2 24899999999999999996 56889887
Q ss_pred EEE
Q 013270 273 QCQ 275 (446)
Q Consensus 273 ~v~ 275 (446)
...
T Consensus 245 mAR 247 (684)
T KOG2591|consen 245 MAR 247 (684)
T ss_pred hhh
Confidence 544
No 189
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.69 E-value=0.46 Score=44.05 Aligned_cols=164 Identities=13% Similarity=0.163 Sum_probs=104.1
Q ss_pred ccCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeC-------CCCCccceEEEEEccHHHHHHHHH----c-
Q 013270 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDK-------VTGKAKGFAFIVFKTRKAAVKALK----N- 167 (446)
Q Consensus 100 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-------~~g~~~G~afV~f~~~~~A~~Al~----~- 167 (446)
.+++-..|.|.+.||..+++-..+...|-+||+|++|.++.+. ..........+.|-+.+.+..... .
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 3445567899999999999999999999999999999999774 122344678999999998766432 2
Q ss_pred --CCCcccCccceeeecccCCCCCCC----------------ccCcccccCcceeecCCCCCcccHHH-HHHHh---ccc
Q 013270 168 --PQRKVNNRMASCQLASVGPTGPGV----------------KEQGAAAQGERKIYVSNVPRDVEKEK-LRGFF---ERF 225 (446)
Q Consensus 168 --~~~~~~g~~i~v~~~~~~~~~~~~----------------~~~~~~~~~~~~l~V~nLp~~~te~~-L~~~F---~~~ 225 (446)
+...+.-..|.+.+.......... ...-......+.|.|.= ...+.+++ |.+.+ ..-
T Consensus 89 sEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccC
Confidence 234477777777766532111100 00001123445666532 23343333 22222 222
Q ss_pred C----CeeEEEEeec--CCCCCceeEEEEEeCCHHHHHHHHHhCC
Q 013270 226 G----EIETGPIGFD--ITTGKSRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 226 G----~V~~v~i~~d--~~~g~~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
+ .|++|.|+.- +...-++.||.++|-+...|...+..+.
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 3 3566777653 2234568899999999999999888775
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.51 E-value=0.073 Score=43.72 Aligned_cols=74 Identities=24% Similarity=0.324 Sum_probs=57.9
Q ss_pred CCCCCeEEEeCCCCCCC----HHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccce
Q 013270 103 DVSQRKIFVHGLGWDTT----QESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMAS 178 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~t----e~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~ 178 (446)
+..-.+|.|+=|..++. ...|...++.||+|.+|.+. |+. .|.|.|.+..+|-+|+.++.....|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Grq--savVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GRQ--SAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CCc--eEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 45567888877766653 23345567889999999874 333 69999999999999999998888899998
Q ss_pred eeecc
Q 013270 179 CQLAS 183 (446)
Q Consensus 179 v~~~~ 183 (446)
|.|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 88754
No 191
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.46 E-value=0.18 Score=49.30 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=58.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccC
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNN 174 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g 174 (446)
.++.|+|-.+|..+|-.||..|...|- .|.+++|+||.. -++-..+|.|.+.++|....+.+|+. |+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 389999999999999999999998865 789999999753 34457899999999999999998865 543
No 192
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.26 E-value=0.36 Score=38.58 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=47.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK 171 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~ 171 (446)
....+.+...|+-++-++|..+.+.+- .|..++|++|.. .++-.+.+.|.+.++|......+|++
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCC
Confidence 344445555555566667776666654 678899998852 36668999999999999999997755
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.14 E-value=0.057 Score=50.87 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=60.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHH---HhhccCCCeeEEEEEeeCC--CCC-ccceEEEEEccHHHHHHHHHcCCCc-ccCcc
Q 013270 104 VSQRKIFVHGLGWDTTQESLL---SAFGGSGEIEECKLVIDKV--TGK-AKGFAFIVFKTRKAAVKALKNPQRK-VNNRM 176 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~---~~F~~~G~v~~v~i~~~~~--~g~-~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~ 176 (446)
...+-+||-+|+....++++. ++|..||.|..|.+.++.. .+. .-.-+||+|...++|..||..-++. +.|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 445678999999887665543 5899999999998887752 111 1223899999999999999998776 78888
Q ss_pred ceeeeccc
Q 013270 177 ASCQLASV 184 (446)
Q Consensus 177 i~v~~~~~ 184 (446)
++......
T Consensus 155 lka~~gtt 162 (327)
T KOG2068|consen 155 LKASLGTT 162 (327)
T ss_pred hHHhhCCC
Confidence 76665543
No 194
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.88 E-value=0.078 Score=55.98 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=62.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccC--ccce
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNN--RMAS 178 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g--~~i~ 178 (446)
.....+.+||++|...+....|...|..||.|..|.+- -|. -||||.|.+...++.|+..+.+. |.+ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hgq--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HGQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cCC--cceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 34567899999999999999999999999999988763 233 39999999999999999988655 544 5677
Q ss_pred eeecc
Q 013270 179 CQLAS 183 (446)
Q Consensus 179 v~~~~ 183 (446)
|.++.
T Consensus 525 vdla~ 529 (975)
T KOG0112|consen 525 VDLAS 529 (975)
T ss_pred ccccc
Confidence 77664
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.48 E-value=0.13 Score=45.07 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=49.2
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcc-cCCe---eEEEEeecCC-CC-CceeEEEEEeCCHHHHHHHHHhCC-Ccc-cC-
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFER-FGEI---ETGPIGFDIT-TG-KSRGFAIFVYKTVEGARKALEEPQ-KMF-EG- 269 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~V---~~v~i~~d~~-~g-~~kG~afV~F~~~~~A~~Ai~~~~-~~~-~G- 269 (446)
....+|.|++||+.+|++++++.++. ++.. .++.-..... .. ..-..|||.|.+.+++..-...++ +.| +.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44569999999999999999998877 6655 3443222211 11 224569999999999988888887 333 22
Q ss_pred ---eEEEEEEccc
Q 013270 270 ---HQLQCQKAAE 279 (446)
Q Consensus 270 ---r~l~v~~a~~ 279 (446)
....|.+|--
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 4566777754
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.47 E-value=0.036 Score=52.14 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=63.4
Q ss_pred cCcceeecCCCCCcccHHHHH---HHhcccCCeeEEEEeecCC--CCCc-eeEEEEEeCCHHHHHHHHHhCC-CcccCeE
Q 013270 199 QGERKIYVSNVPRDVEKEKLR---GFFERFGEIETGPIGFDIT--TGKS-RGFAIFVYKTVEGARKALEEPQ-KMFEGHQ 271 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~---~~F~~~G~V~~v~i~~d~~--~g~~-kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~ 271 (446)
...+-+||-+|+..+.++.+. +.|.+||.|..|.+.+++. .+.. ..-++|+|...++|..||..-+ ..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 344668888888877655554 5788999999999988762 1111 1238999999999999999998 6689999
Q ss_pred EEEEEcccCC
Q 013270 272 LQCQKAAEGK 281 (446)
Q Consensus 272 l~v~~a~~~~ 281 (446)
|+..+...+.
T Consensus 155 lka~~gttky 164 (327)
T KOG2068|consen 155 LKASLGTTKY 164 (327)
T ss_pred hHHhhCCCcc
Confidence 8888887664
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.31 E-value=0.15 Score=44.70 Aligned_cols=68 Identities=13% Similarity=0.054 Sum_probs=42.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhcc-CCCe---eEEEEEeeCCC-CC-ccceEEEEEccHHHHHHHHHcCCCc
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGG-SGEI---EECKLVIDKVT-GK-AKGFAFIVFKTRKAAVKALKNPQRK 171 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~v---~~v~i~~~~~~-g~-~~G~afV~f~~~~~A~~Al~~~~~~ 171 (446)
....+|-|++||+++|++++.+.++. ++.. ..+.-...... .. .-.-|||.|.+.+++......+++.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~ 78 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGH 78 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Confidence 34679999999999999999998887 6655 33331122111 11 2235999999999999999888653
No 198
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.95 E-value=0.54 Score=47.50 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=57.7
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHhhccC----CCeeEEEEEeeC----------CCCC---------------------
Q 013270 103 DVSQRKIFVHGLGWD-TTQESLLSAFGGS----GEIEECKLVIDK----------VTGK--------------------- 146 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~v~~v~i~~~~----------~~g~--------------------- 146 (446)
....++|-|.||.|+ +...||.-+|+.| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 446799999999998 7888999999887 589999875431 0111
Q ss_pred ----------------ccceEEEEEccHHHHHHHHHcCCCc-cc--Cccceeee
Q 013270 147 ----------------AKGFAFIVFKTRKAAVKALKNPQRK-VN--NRMASCQL 181 (446)
Q Consensus 147 ----------------~~G~afV~f~~~~~A~~Al~~~~~~-~~--g~~i~v~~ 181 (446)
.--||.|+|.+.+.|......+.+. |. +..+.+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1136889999999999999998765 54 33444443
No 199
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.90 E-value=0.1 Score=51.20 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=58.5
Q ss_pred ceeecCCCCCcc-cHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEcccC
Q 013270 202 RKIYVSNVPRDV-EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280 (446)
Q Consensus 202 ~~l~V~nLp~~~-te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a~~~ 280 (446)
+.|-+.-.++.. |-.+|...|.+||+|..|.|-.. --.|.|+|.+..+|-.|.....-.|++|.|+|.|-++.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 444444455554 56899999999999999888433 33699999999999888877667899999999999874
Q ss_pred C
Q 013270 281 K 281 (446)
Q Consensus 281 ~ 281 (446)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 200
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.85 E-value=0.18 Score=38.38 Aligned_cols=72 Identities=25% Similarity=0.348 Sum_probs=48.4
Q ss_pred EEEEEccHHHHHHHHHcCCCc--ccCccceeeecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhc
Q 013270 151 AFIVFKTRKAAVKALKNPQRK--VNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223 (446)
Q Consensus 151 afV~f~~~~~A~~Al~~~~~~--~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 223 (446)
|+|+|.++.-|++.++.-... +++..+.|....... ....+-.-......++|.|.|||..+++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~-~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTL-GHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEec-CCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999986543 555555554322111 111111122256778999999999999999987655
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.79 E-value=0.41 Score=42.11 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=45.1
Q ss_pred cHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC---CcccCeEEEEEEcccCC
Q 013270 214 EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ---KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 214 te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~---~~~~Gr~l~v~~a~~~~ 281 (446)
..+.|+++|..|+.+..+.+++. -+-..|.|.+.++|.+|...++ ..+.|..|+|-|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999999988877755 3468999999999999999998 35999999999995443
No 202
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.17 E-value=0.023 Score=57.91 Aligned_cols=151 Identities=11% Similarity=0.095 Sum_probs=95.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...-+|||+|+...+..+=++.+...||-|.++.... |+|+.|....-...|+..+... +++..+.+..-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4568999999999999999999999999998876532 9999999999999999887654 66666555432
Q ss_pred ccC--------CCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHH
Q 013270 183 SVG--------PTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVE 254 (446)
Q Consensus 183 ~~~--------~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~ 254 (446)
... .........-......+-++|.|++-...+......|.-.+.....+-..+ ....+.-++|-+|.+..
T Consensus 109 ~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~~~~e-~d~h~~e~~~~~~~s~~ 187 (668)
T KOG2253|consen 109 EQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRRQIAE-ADDHCLELEKTETESNS 187 (668)
T ss_pred hhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhhhhhhHH-HHHHHHHHHHhhccccc
Confidence 100 000000000011222567888999888877777777765544443333222 22344455666666655
Q ss_pred HHHHHHHhCC
Q 013270 255 GARKALEEPQ 264 (446)
Q Consensus 255 ~A~~Ai~~~~ 264 (446)
....+.....
T Consensus 188 ~~~~~~~~~~ 197 (668)
T KOG2253|consen 188 ALSKEAESKK 197 (668)
T ss_pred ccCccccccc
Confidence 5555444443
No 203
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.13 E-value=1 Score=41.90 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=57.3
Q ss_pred cceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCe-EEEEEEccc
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGH-QLQCQKAAE 279 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr-~l~v~~a~~ 279 (446)
..-|-|-++|..-.. -|..+|++||+|.+..- ...-.+-+|.|.+.-+|.+||.....+|+|. .|-|+.+..
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 456777778765543 56689999999987533 2334589999999999999999988888884 456877766
Q ss_pred CCCCC
Q 013270 280 GKNRT 284 (446)
Q Consensus 280 ~~~~~ 284 (446)
+....
T Consensus 270 ksvi~ 274 (350)
T KOG4285|consen 270 KSVIN 274 (350)
T ss_pred HHHhc
Confidence 65443
No 204
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.58 E-value=1.7 Score=42.00 Aligned_cols=63 Identities=22% Similarity=0.148 Sum_probs=50.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCC-eeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCccc
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGE-IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVN 173 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~ 173 (446)
.-...|=|.++|.....+||...|+.|+. --+|.++-|. .||-.|.+...|..||..-+..+.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lK 452 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLK 452 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEE
Confidence 35678889999999999999999999973 4456666664 799999999999999987433333
No 205
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.48 E-value=2.4 Score=33.81 Aligned_cols=63 Identities=21% Similarity=0.107 Sum_probs=48.7
Q ss_pred CcceeecCCCCCcccHHHHHHHhccc-CCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERF-GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
....+.+...|+.++-++|..+.+.+ ..|..++|++|. ..++=.+.++|.+.++|..-....|
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhC
Confidence 34556666777888888888777776 467779998873 2345568999999999999999988
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.62 E-value=0.22 Score=50.99 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=61.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
.....++||+|+-..+..+-++.+...+|.|.++.... |||+.|.......+|+..+. ..++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 55678999999999999999999999999998765532 99999999999999999998 678888887766
Q ss_pred c
Q 013270 277 A 277 (446)
Q Consensus 277 a 277 (446)
-
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 3
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.82 E-value=0.21 Score=49.04 Aligned_cols=75 Identities=24% Similarity=0.239 Sum_probs=60.8
Q ss_pred CCCCeEEEeCCCCCC-CHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDT-TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~-te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
.+.+.|-+.-.|... |-++|...|..||+|..|.|-.. --.|.|+|.+..+|-.|.....-.|++|.|+|.|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEe
Confidence 345666666667765 45789999999999999988544 22699999999999888888788899999999997
Q ss_pred cc
Q 013270 183 SV 184 (446)
Q Consensus 183 ~~ 184 (446)
..
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 64
No 208
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.81 E-value=0.26 Score=51.79 Aligned_cols=74 Identities=20% Similarity=0.189 Sum_probs=61.8
Q ss_pred eeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-C--cccCeEEEEEEccc
Q 013270 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-K--MFEGHQLQCQKAAE 279 (446)
Q Consensus 203 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~--~~~Gr~l~v~~a~~ 279 (446)
+.++-|.+-..+-.-|..+|+.||.|.+++.++| -..|.|+|.+.+.|..|+.++. . ...|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3445555667888899999999999999999888 4579999999999999999997 3 36888899999976
Q ss_pred CCC
Q 013270 280 GKN 282 (446)
Q Consensus 280 ~~~ 282 (446)
-..
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 543
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.17 E-value=1.4 Score=40.99 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=50.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCcc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRM 176 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~ 176 (446)
....|-|-++|..-. .-|-.+|++||.|+....- +.--+-+|.|.+.-+|++||.+.+..|+|..
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~v 260 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDV 260 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccce
Confidence 367788888988644 4567889999999766443 2223889999999999999999877777754
No 210
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.67 E-value=1.8 Score=38.04 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=43.0
Q ss_pred CHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC--Cc-ccCccceeeeccc
Q 013270 119 TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ--RK-VNNRMASCQLASV 184 (446)
Q Consensus 119 te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~--~~-~~g~~i~v~~~~~ 184 (446)
..+.|+++|..|+.+....+++. -+=..|.|.+.++|.+|...++ +. +.|..++|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999888777643 2358899999999999999988 55 8999999988743
No 211
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=85.77 E-value=1.7 Score=36.78 Aligned_cols=118 Identities=12% Similarity=0.001 Sum_probs=73.8
Q ss_pred CeEEEeCCC--CCCCHHHHHHhhcc-CCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeecc
Q 013270 107 RKIFVHGLG--WDTTQESLLSAFGG-SGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183 (446)
Q Consensus 107 ~~l~V~nLp--~~~te~~L~~~F~~-~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~ 183 (446)
....|+.+. ...+-..|...+.+ ++....+.+..- ..++..+.|.+.+++.+++..-.-.+.+..+.+..-.
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 344455552 23556666665544 233223333221 2358999999999999999876666788777666543
Q ss_pred cCCCCCCCccCcccccCcceeecCCCCCc-ccHHHHHHHhcccCCeeEEEE
Q 013270 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRD-VEKEKLRGFFERFGEIETGPI 233 (446)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~V~~v~i 233 (446)
...... .........-|.|.|||.. .+++-|+.+.+.+|.+.++..
T Consensus 91 ~~~~~~----~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~ 137 (153)
T PF14111_consen 91 PDFNPS----EVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDE 137 (153)
T ss_pred cccccc----ccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEc
Confidence 111110 0011223445778899988 688899999999999988755
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=84.73 E-value=4.3 Score=29.10 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=39.2
Q ss_pred cccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEE
Q 013270 212 DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273 (446)
Q Consensus 212 ~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~ 273 (446)
.++-+||+..+..|+- .+|..|+ .|| ||.|.+..+|+++....+ ..+.+..|.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 4778899999999954 2344553 444 799999999999999988 455555544
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=83.48 E-value=0.65 Score=49.01 Aligned_cols=73 Identities=21% Similarity=0.183 Sum_probs=59.7
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc---ccCccceeeecc
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK---VNNRMASCQLAS 183 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~---~~g~~i~v~~~~ 183 (446)
-+.++-|.+-..+-.-|..+|.+||.|.+++.+++-. .|.|+|.+.+.|..|++.+.++ +.|-+.+|.+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3455666677788899999999999999999988753 7999999999999999998643 677777887775
Q ss_pred cC
Q 013270 184 VG 185 (446)
Q Consensus 184 ~~ 185 (446)
..
T Consensus 373 ~~ 374 (1007)
T KOG4574|consen 373 TL 374 (1007)
T ss_pred cc
Confidence 43
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.18 E-value=3 Score=41.08 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=53.0
Q ss_pred cceeecCCCCCcccHHHHHHHhccc-CCeeEEEEeecCCCCCcee-EEEEEeCCHHHHHHHHHhCC
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERF-GEIETGPIGFDITTGKSRG-FAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~-G~V~~v~i~~d~~~g~~kG-~afV~F~~~~~A~~Ai~~~~ 264 (446)
...|+|-.+|-.+|-.||..|+..| -.|..++|++| +-+.. .++|+|.+.++|..-.+.+|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcC
Confidence 7889999999999999999999876 47888999997 33333 48999999999999999998
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.52 E-value=5.8 Score=29.06 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=33.3
Q ss_pred CcccHHHHHHHhcccC-----CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 211 RDVEKEKLRGFFERFG-----EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 211 ~~~te~~L~~~F~~~G-----~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
..++..+|..++...+ .|-.|+|..+ |.||+-... .|..++..++ ..+.|+.|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3577888888887664 4556677533 888887654 6778888888 7799999999875
No 216
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=75.35 E-value=4.2 Score=35.15 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=54.3
Q ss_pred ceeecCCCCCcc-----cHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCe-EEEE
Q 013270 202 RKIYVSNVPRDV-----EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGH-QLQC 274 (446)
Q Consensus 202 ~~l~V~nLp~~~-----te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr-~l~v 274 (446)
..+.+.+++..+ .......+|.+|-+..-.++++. .++..|.|.+++.|..|...++ +.|.|+ .+.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 345666666543 22345566777776666566544 5677899999999999999998 779888 8888
Q ss_pred EEcccCCCC
Q 013270 275 QKAAEGKNR 283 (446)
Q Consensus 275 ~~a~~~~~~ 283 (446)
-++.+....
T Consensus 85 yfaQ~~~~~ 93 (193)
T KOG4019|consen 85 YFAQPGHPE 93 (193)
T ss_pred EEccCCCcc
Confidence 888765543
No 217
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=74.46 E-value=10 Score=30.11 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=61.9
Q ss_pred CCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc---ccCccceeeecccCCCCCC
Q 013270 114 LGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK---VNNRMASCQLASVGPTGPG 190 (446)
Q Consensus 114 Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~---~~g~~i~v~~~~~~~~~~~ 190 (446)
||+-++ .|.++|+.-|+|.+|..+..-.+ ..|+-.+++. ++|. |++....... +
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~vDg~-i~IGs~q~~~---s 67 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQVDGN-IRIGSGQTPA---S 67 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhccCc-EEEccCCCcc---c
Confidence 676554 68999999999999876543111 1133333333 3444 4333221100 0
Q ss_pred CccCcccccCcceeecCCCCCcccHHHHHHHhcc---cCCeeEEEEeecCCCCCceeEEEEEeCCH
Q 013270 191 VKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFER---FGEIETGPIGFDITTGKSRGFAIFVYKTV 253 (446)
Q Consensus 191 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~---~G~V~~v~i~~d~~~g~~kG~afV~F~~~ 253 (446)
.. -......+..+| -|+.+|-.+|+++|.. |-.|..-.|.+|-.-..+-..||..|...
T Consensus 68 V~-i~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 68 VR-IQGTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred EE-EecCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 00 001122223333 3789999999999985 55666656666632233344688888654
No 218
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=73.18 E-value=11 Score=27.00 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=35.7
Q ss_pred CCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc
Q 013270 117 DTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK 171 (446)
Q Consensus 117 ~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~ 171 (446)
.++-+||+..+.+|+-. +|..|+ || -||.|.+..+|+++....++.
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~ 56 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-TG-----FYIVFNDSKEAERCFRAEDGT 56 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-CE-----EEEEECChHHHHHHHHhcCCC
Confidence 47889999999999632 344453 43 489999999999999987765
No 219
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=73.09 E-value=11 Score=41.01 Aligned_cols=6 Identities=50% Similarity=1.104 Sum_probs=3.0
Q ss_pred ccceEE
Q 013270 147 AKGFAF 152 (446)
Q Consensus 147 ~~G~af 152 (446)
..||||
T Consensus 763 R~G~~f 768 (1282)
T KOG0921|consen 763 RPGFCF 768 (1282)
T ss_pred cccccc
Confidence 345555
No 220
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=71.25 E-value=3.4 Score=35.55 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=49.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCC--CccceEEEEEccHHHHHHHHHcCCCcccCccceee
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTG--KAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQ 180 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g--~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~ 180 (446)
...+++|.. +.+...++|..+-+ |.+..|.+.+.. .+ ..+|-.||+|.+.+.|.++++.....+.-..+...
T Consensus 109 ~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~r~ 182 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELKRS 182 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHHHH
Confidence 346788888 54555566666655 788777765442 23 56899999999999999988876555544444333
No 221
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=70.26 E-value=3.4 Score=40.15 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=56.1
Q ss_pred CCCCCeEEEeCCCCCCCHH--------HHHHhhcc--CCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcC
Q 013270 103 DVSQRKIFVHGLGWDTTQE--------SLLSAFGG--SGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~--------~L~~~F~~--~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~ 168 (446)
....+.+|+.++....+.+ ++...|.. .+++..++..++.....++|..|++|.....+++.+...
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~~ 246 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNGF 246 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhccc
Confidence 3456789999998877666 99999999 678889999998878889999999999999999987543
No 222
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=70.23 E-value=14 Score=34.56 Aligned_cols=88 Identities=14% Similarity=0.142 Sum_probs=66.7
Q ss_pred ccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCC-------CCCceeEEEEEeCCHHHHHH----HHHhCC
Q 013270 196 AAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDIT-------TGKSRGFAIFVYKTVEGARK----ALEEPQ 264 (446)
Q Consensus 196 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~-------~g~~kG~afV~F~~~~~A~~----Ai~~~~ 264 (446)
.+.-..+.|.+.|+..+++-..+...|-+||.|++|.++.+.. ..+......+.|-+.+.+.. .++.+.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999999999999998741 12334678899988876543 333343
Q ss_pred ---CcccCeEEEEEEcccCCCC
Q 013270 265 ---KMFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 265 ---~~~~Gr~l~v~~a~~~~~~ 283 (446)
..+....|.|.|..-+...
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~ 111 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQK 111 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccc
Confidence 5588899999998865443
No 223
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=68.39 E-value=12 Score=27.04 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=45.8
Q ss_pred HHHHHHhcccC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccC
Q 013270 216 EKLRGFFERFG-EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 216 ~~L~~~F~~~G-~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
++|++.|...| .|..++-+..+.++..--.-||+.....+ ..+-++ ..+++..|.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCC
Confidence 46778888877 77888888877677777788898877665 223345 5689999999887544
No 224
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=68.09 E-value=17 Score=33.74 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=36.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHH
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRK 159 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~ 159 (446)
..+-|||+|||.++.-.||+..+.+-+-+ -.+|... -+.|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 34569999999999999999999887632 2333332 25678999997643
No 225
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=65.16 E-value=15 Score=26.87 Aligned_cols=57 Identities=18% Similarity=0.291 Sum_probs=33.0
Q ss_pred CCCHHHHHHhhccCC-----CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeec
Q 013270 117 DTTQESLLSAFGGSG-----EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLA 182 (446)
Q Consensus 117 ~~te~~L~~~F~~~G-----~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~ 182 (446)
.++..+|..++...+ .|-.|+|..+ |.||+-... .|..++..++. .+.|+.+.|..+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 478888888887764 4556777533 889886554 77888888764 599999998764
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.61 E-value=7.3 Score=31.44 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=29.1
Q ss_pred eEEEeCCCCCC---------CHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHH
Q 013270 108 KIFVHGLGWDT---------TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161 (446)
Q Consensus 108 ~l~V~nLp~~~---------te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A 161 (446)
++.|-|++.+. +.++|++.|+.|..+. ++.+.++. -+.|++.|.|...-+-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHH
Confidence 45566665543 4578999999998874 66777752 5789999999765443
No 227
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=63.12 E-value=13 Score=26.70 Aligned_cols=62 Identities=6% Similarity=0.094 Sum_probs=44.7
Q ss_pred HHHHHHhcccC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccC
Q 013270 216 EKLRGFFERFG-EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 216 ~~L~~~F~~~G-~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
.+|.+.|..+| .|..++-+..+.++.+-..-||+.....+-.. -++ +.|+|+.+.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46778888888 78888888887777776777888766543322 334 6789999999876543
No 228
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=62.12 E-value=24 Score=26.67 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=45.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC
Q 013270 108 KIFVHGLGWDTTQESLLSAFGG-SG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ 169 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~ 169 (446)
+-|+--++.+++..+|+..++. || .|.+|+.+.-+ . ..--|||.+...++|......++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHhhc
Confidence 4556668899999999999998 66 78888887664 2 22259999999998888766543
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.13 E-value=15 Score=35.79 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=50.7
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCe-eEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEE
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEI-ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V-~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l 272 (446)
-.+.|-|.++|..+-.+||...|+.|+.- -+|.++-| -.+|-.|.+...|..||..-+.++.=|+|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~kh~~lKiRpL 456 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTLKHDWLKIRPL 456 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhccCceEEeeeh
Confidence 45789999999999999999999999743 34555544 37999999999999999875544443443
No 230
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.91 E-value=10 Score=30.65 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=24.5
Q ss_pred ccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHH
Q 013270 213 VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVE 254 (446)
Q Consensus 213 ~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~ 254 (446)
.+.+.|++.|+.|..++ ++.+.++ ..+.|++.|+|...-
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDW 67 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCCh
Confidence 35578999999998875 6666764 367899999996543
No 231
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=59.79 E-value=46 Score=33.28 Aligned_cols=7 Identities=29% Similarity=0.406 Sum_probs=3.2
Q ss_pred CCHHHHH
Q 013270 118 TTQESLL 124 (446)
Q Consensus 118 ~te~~L~ 124 (446)
++++||.
T Consensus 220 ldeEDlY 226 (654)
T COG5180 220 LDEEDLY 226 (654)
T ss_pred cchhhhh
Confidence 4444443
No 232
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=58.82 E-value=13 Score=36.17 Aligned_cols=38 Identities=18% Similarity=0.474 Sum_probs=29.6
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHhhccC----CCeeEEEEEe
Q 013270 103 DVSQRKIFVHGLGWD-TTQESLLSAFGGS----GEIEECKLVI 140 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~v~~v~i~~ 140 (446)
.....+|-|-||.|+ +...+|...|+.| |.|..|.|..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 345688999999997 7778999999876 5777777653
No 233
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=56.04 E-value=33 Score=25.42 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=43.8
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcC
Q 013270 108 KIFVHGLGWDTTQESLLSAFGG-SG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~ 168 (446)
+-|+-.++.++|..+|+..++. |+ .|.+|+.+.-+ . ..--|||.+...++|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHhh
Confidence 4666778999999999999988 66 78888877654 1 2225999998888887765543
No 234
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.47 E-value=38 Score=34.85 Aligned_cols=81 Identities=22% Similarity=0.300 Sum_probs=59.7
Q ss_pred ccCcceeecCCCCCc-ccHHHHHHHhccc----CCeeEEEEeecC----------CCCC---------------------
Q 013270 198 AQGERKIYVSNVPRD-VEKEKLRGFFERF----GEIETGPIGFDI----------TTGK--------------------- 241 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~V~~v~i~~d~----------~~g~--------------------- 241 (446)
...+++|-|.||.|. +.-+||.-+|+.| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 556789999999997 6889999999977 689998875421 0111
Q ss_pred ---------------ce-eEEEEEeCCHHHHHHHHHhCC-Ccc--cCeEEEEEEcc
Q 013270 242 ---------------SR-GFAIFVYKTVEGARKALEEPQ-KMF--EGHQLQCQKAA 278 (446)
Q Consensus 242 ---------------~k-G~afV~F~~~~~A~~Ai~~~~-~~~--~Gr~l~v~~a~ 278 (446)
.+ =||.|+|.+++.|.+.....+ ..| -+..|-+.|.-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 12 269999999999999998887 334 45667777653
No 235
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=50.56 E-value=34 Score=31.82 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=35.7
Q ss_pred cceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHH
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVE 254 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~ 254 (446)
..-|+|+||+.++.-.||+..+.+-+-+- .+|- . ..+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~is---w-kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSIS---W-KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEe---e-ecCCcceeEecCCcc
Confidence 36699999999999999999998765432 2221 1 234788999997643
No 236
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=47.78 E-value=10 Score=37.02 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=54.6
Q ss_pred ccCcceeecCCCCCcccHH--------HHHHHhcc--cCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC
Q 013270 198 AQGERKIYVSNVPRDVEKE--------KLRGFFER--FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~--------~L~~~F~~--~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~ 263 (446)
....+.+|+.++....+.+ ++...|.. ++.+..++.-+|.....++|-.|++|.....+.+.+...
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~~ 246 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNGF 246 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhccc
Confidence 3345778888888776555 99999999 688888998888778888999999999999999998533
No 237
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=47.20 E-value=7.4 Score=39.48 Aligned_cols=67 Identities=9% Similarity=0.013 Sum_probs=48.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ 169 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~ 169 (446)
....|+|||+|++++.+-++|..++..+--+..+-+.......+...+.+|+|..--....|+..++
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 3457999999999999999999999987655555554332223455678899977666666666654
No 238
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.80 E-value=43 Score=23.60 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=15.4
Q ss_pred HHHHHHhcccCCeeEEEE
Q 013270 216 EKLRGFFERFGEIETGPI 233 (446)
Q Consensus 216 ~~L~~~F~~~G~V~~v~i 233 (446)
.+||++|+..|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999976655
No 239
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.88 E-value=1e+02 Score=31.00 Aligned_cols=8 Identities=13% Similarity=-0.093 Sum_probs=4.8
Q ss_pred EEEeCCHH
Q 013270 247 IFVYKTVE 254 (446)
Q Consensus 247 fV~F~~~~ 254 (446)
.++|.+.+
T Consensus 318 e~dfSDDE 325 (483)
T KOG2236|consen 318 EQDFSDDE 325 (483)
T ss_pred hhccchHH
Confidence 36776654
No 240
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=45.43 E-value=16 Score=27.89 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhc
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFG 128 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~ 128 (446)
.....++|.|.|||...++++|++.++
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeEE
Confidence 356789999999999999999998654
No 241
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.75 E-value=3.1 Score=35.63 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=10.9
Q ss_pred chhhhhhcccccccCCCccccccC
Q 013270 4 INKVKKLKQATTSQKPNKKILKKE 27 (446)
Q Consensus 4 ~~k~kk~~~~~~~~k~~k~~~~k~ 27 (446)
++++++..++.+.++..|..+.|+
T Consensus 116 ~ek~~kaaEeKTaKKRaKRqk~Kq 139 (213)
T KOG4055|consen 116 LEKNQKAAEEKTAKKRAKRQKKKQ 139 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444433333
No 242
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=41.17 E-value=16 Score=33.74 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=28.1
Q ss_pred CCCeEEEeCCCCCC------------CHHHHHHhhccCCCeeEEEEE
Q 013270 105 SQRKIFVHGLGWDT------------TQESLLSAFGGSGEIEECKLV 139 (446)
Q Consensus 105 ~~~~l~V~nLp~~~------------te~~L~~~F~~~G~v~~v~i~ 139 (446)
...|||+.+||-.| +++-|+..|+.||.|..|.|.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 45688888888543 567899999999999988774
No 243
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.78 E-value=6.3 Score=38.75 Aligned_cols=79 Identities=8% Similarity=-0.113 Sum_probs=60.7
Q ss_pred cceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEccc
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAE 279 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~ 279 (446)
..+.|+..++-..+++++.-+|+.||.|..+.+-+....+..+-.+||+-.+ +.+..+|..+. ..+.|..++|..+..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 3467888999999999999999999999988776665566667788888765 34566676665 567888888877764
Q ss_pred C
Q 013270 280 G 280 (446)
Q Consensus 280 ~ 280 (446)
.
T Consensus 82 s 82 (572)
T KOG4365|consen 82 S 82 (572)
T ss_pred h
Confidence 3
No 244
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=39.59 E-value=1.1e+02 Score=27.56 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=4.9
Q ss_pred CCCCCCCCCCC
Q 013270 336 QHPGMHPLYGG 346 (446)
Q Consensus 336 ~~~~~~~~~~~ 346 (446)
.|+.+++.+++
T Consensus 7 ypQa~np~mGG 17 (238)
T PF02084_consen 7 YPQAMNPPMGG 17 (238)
T ss_pred CCcccCCCcCC
Confidence 34444444433
No 245
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=34.85 E-value=58 Score=23.43 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=41.8
Q ss_pred HHHHHhhccCC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 121 ESLLSAFGGSG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 121 ~~L~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
++|.+-|...| +|..|.-++.+.+....-..||+.....+... -++.. +.+..+.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 46788888888 78888888777677777788888877655222 33433 677777776543
No 246
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=34.54 E-value=88 Score=26.28 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=39.3
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHH
Q 013270 108 KIFVHGLGWDTTQESLLSAFGG-SG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALK 166 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~ 166 (446)
+-|+--++...+..+|+..++. |+ .|..|+.+.-+. |. --|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~--KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GL--KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHHH
Confidence 4455557889999999999987 65 677777766542 21 248999987777654433
No 247
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=34.49 E-value=98 Score=31.07 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=4.8
Q ss_pred EccHHHHHHHHH
Q 013270 155 FKTRKAAVKALK 166 (446)
Q Consensus 155 f~~~~~A~~Al~ 166 (446)
|....+....|.
T Consensus 330 ~Ds~K~~lEv~k 341 (654)
T COG5180 330 FDSSKNLLEVIK 341 (654)
T ss_pred ccchhHHHHHHH
Confidence 444444333333
No 248
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=34.19 E-value=1.2e+02 Score=33.50 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=26.0
Q ss_pred CceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEE
Q 013270 241 KSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274 (446)
Q Consensus 241 ~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v 274 (446)
.-+||.||+=.....+..||+.+.....++.+-|
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~~~~lV 241 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYANRILLV 241 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheeccEEEE
Confidence 3499999999999999999998864444444443
No 249
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=34.18 E-value=90 Score=26.66 Aligned_cols=34 Identities=3% Similarity=0.022 Sum_probs=28.0
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-CeeEEEEEee
Q 013270 108 KIFVHGLGWDTTQESLLSAFGG-SG-EIEECKLVID 141 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~ 141 (446)
+.|+-.++.++|..+|+..|+. || .|..|+.+.-
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 5688889999999999999988 66 6778877654
No 250
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=34.14 E-value=53 Score=23.71 Aligned_cols=59 Identities=5% Similarity=0.058 Sum_probs=40.9
Q ss_pred HHHHHhhccCC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCccceeeec
Q 013270 121 ESLLSAFGGSG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASCQLA 182 (446)
Q Consensus 121 ~~L~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v~~~ 182 (446)
++|++-|.+.| ++..|.-++.+.+....-.-||+.....+... -++ ..+.++.+.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46788888888 88899888887767677788888766543222 223 2367777777654
No 251
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=33.43 E-value=1.1e+02 Score=23.17 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=41.1
Q ss_pred eecCCCCCcccHHHHHHHhcc-cC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC
Q 013270 204 IYVSNVPRDVEKEKLRGFFER-FG-EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263 (446)
Q Consensus 204 l~V~nLp~~~te~~L~~~F~~-~G-~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~ 263 (446)
-|+-.++...+..+|++.++. || .|.+|+.+.-+ ...--|||++.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 344456778999999999987 55 67888777653 12235999999988888765544
No 252
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.91 E-value=79 Score=30.01 Aligned_cols=12 Identities=33% Similarity=0.550 Sum_probs=7.3
Q ss_pred CCCCchhHHHHh
Q 013270 416 PGYTSYMWYGLL 427 (446)
Q Consensus 416 gg~~~y~~~~~~ 427 (446)
|||..+-+|++.
T Consensus 91 gGyN~~~~~g~n 102 (362)
T KOG3875|consen 91 GGYNRFGPYGTN 102 (362)
T ss_pred cccccccccccC
Confidence 556666666664
No 253
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=32.28 E-value=77 Score=30.47 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=34.8
Q ss_pred EEEEEccHHHHHHHHHcCCCcccCccceeeecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhc
Q 013270 151 AFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFE 223 (446)
Q Consensus 151 afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 223 (446)
|||+|.+..+|..|++.....- .+.+.+..+ ++.+-|+=.||.....+..+|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~-~~~~~v~~A----------------PeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR-PNSWRVSPA----------------PEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC-CCCceEeeC----------------CCcccccccccCCChHHHHHHHHHH
Confidence 7999999999999999543222 233344443 2233445567766666666665554
No 254
>CHL00030 rpl23 ribosomal protein L23
Probab=32.13 E-value=1.2e+02 Score=23.38 Aligned_cols=35 Identities=6% Similarity=-0.035 Sum_probs=28.0
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-CeeEEEEEeeC
Q 013270 108 KIFVHGLGWDTTQESLLSAFGG-SG-EIEECKLVIDK 142 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~ 142 (446)
+.|+--++.++|..+|++.++. || .|..|+.+.-+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 5666778999999999999988 66 67788776554
No 255
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=32.03 E-value=50 Score=30.59 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=30.2
Q ss_pred ccCcceeecCCCCCc------------ccHHHHHHHhcccCCeeEEEEee
Q 013270 198 AQGERKIYVSNVPRD------------VEKEKLRGFFERFGEIETGPIGF 235 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~------------~te~~L~~~F~~~G~V~~v~i~~ 235 (446)
.....+||+.+||-. -+++-|+..|+.||.|..|.|+.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 345678999888732 36788999999999999988765
No 256
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=30.27 E-value=40 Score=30.58 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=30.2
Q ss_pred cCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEE
Q 013270 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEEC 136 (446)
Q Consensus 101 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v 136 (446)
.......+||+-|||..+|++.|..+.+.+|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 345567899999999999999999999999865544
No 257
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=29.83 E-value=69 Score=24.50 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=27.0
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-CeeEEEEEee
Q 013270 108 KIFVHGLGWDTTQESLLSAFGG-SG-EIEECKLVID 141 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~ 141 (446)
..|+-.++.++|..||+++++. || .|.+|+.+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~ 56 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNY 56 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEe
Confidence 4566678999999999999988 67 6777776654
No 258
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=25.64 E-value=13 Score=37.86 Aligned_cols=65 Identities=8% Similarity=0.003 Sum_probs=45.2
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
..++||++|++.+++-.+|..+|..+--+..+-+-.+........++.|+|+-.-....|+.+||
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 45789999999999999999999998766665554332233445678899965444444444443
No 259
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=25.22 E-value=1.1e+02 Score=26.64 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=43.5
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCC--CceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEE
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTG--KSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g--~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~ 276 (446)
...+++|.. +....-++|.++-+ |.+..|..-+. ..+ ..+|-.||+|.+.+.|.+.++.......-+.|...+
T Consensus 109 ~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELKRSG 183 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHHHHhc--ccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHHHHH
Confidence 345677776 32333344444444 67766544332 222 458899999999999999887765334334444433
No 260
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=24.87 E-value=38 Score=32.75 Aligned_cols=9 Identities=22% Similarity=0.693 Sum_probs=4.1
Q ss_pred ceEEEEEcc
Q 013270 149 GFAFIVFKT 157 (446)
Q Consensus 149 G~afV~f~~ 157 (446)
-|-|-.|-.
T Consensus 454 ~Ytytv~lr 462 (520)
T KOG4434|consen 454 NYTYTVFLR 462 (520)
T ss_pred ceEEEEEEe
Confidence 355544433
No 261
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=24.50 E-value=1.2e+02 Score=23.27 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=27.9
Q ss_pred CeEEEeCCCCCCCHHHHHHhhcc-CC-CeeEEEEEeeC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGG-SG-EIEECKLVIDK 142 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~ 142 (446)
.+.|+-.++.++|..+|+..|+. || .|.+|+.+.-+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~ 57 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVK 57 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeC
Confidence 34666668899999999999998 66 67777766543
No 262
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=23.68 E-value=1.5e+02 Score=22.42 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=20.8
Q ss_pred CeeEEEEeecCCCCCceeEEEEEeCC
Q 013270 227 EIETGPIGFDITTGKSRGFAIFVYKT 252 (446)
Q Consensus 227 ~V~~v~i~~d~~~g~~kG~afV~F~~ 252 (446)
.|.+|+|-.-...++.++||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46788887665568999999999988
No 263
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=23.40 E-value=2.5e+02 Score=19.07 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=40.9
Q ss_pred eeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCH----HHHHHHHHhC
Q 013270 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTV----EGARKALEEP 263 (446)
Q Consensus 203 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~----~~A~~Ai~~~ 263 (446)
++.|.||.=.-....|.+.+...-.|.++.+-.. .+.+-|.|... +...++|+.+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHHh
Confidence 4667777777778899999999989988887444 46788888644 5666666654
No 264
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=23.23 E-value=14 Score=25.61 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=21.0
Q ss_pred ceeEEEEEeCC-HHHHHHHHHhCCCcccCeEEEEEEcc
Q 013270 242 SRGFAIFVYKT-VEGARKALEEPQKMFEGHQLQCQKAA 278 (446)
Q Consensus 242 ~kG~afV~F~~-~~~A~~Ai~~~~~~~~Gr~l~v~~a~ 278 (446)
.+|||||...+ ..+.--.-..|+.-++|-.+.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 48999999988 22222233444556778777777665
No 265
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.14 E-value=1.4e+02 Score=23.00 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=20.8
Q ss_pred CeeEEEEeecCCCCCceeEEEEEeCC
Q 013270 227 EIETGPIGFDITTGKSRGFAIFVYKT 252 (446)
Q Consensus 227 ~V~~v~i~~d~~~g~~kG~afV~F~~ 252 (446)
.|++|+|..-...|+-++||-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788776654568899999999988
No 266
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=22.59 E-value=6.9e+02 Score=24.21 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=63.0
Q ss_pred CeEEEe---CCCCCCCHHHHHH----hhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCcccee
Q 013270 107 RKIFVH---GLGWDTTQESLLS----AFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASC 179 (446)
Q Consensus 107 ~~l~V~---nLp~~~te~~L~~----~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v 179 (446)
.+|-|+ |.+++-+-+-++. ++++||--.+++|.+.-. .++|=+-|.|...-. +.+..+.-.-.|+..++
T Consensus 110 ~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GgGeV~~~v~p~--~~l~~i~l~~~g~i~~i 185 (326)
T cd00874 110 STVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGF--YPRGGGEVVLTVEPS--KLLPPLLLEERGEIEKI 185 (326)
T ss_pred EEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEecc--cCCCcceeecCCCeEEE
Confidence 344444 3455555566655 447888766777765432 345556666644321 01111111111111111
Q ss_pred eecccCCCCCCCccCcccccCcceeecCCCCCcccHHHH---HHHhcc-cCCeeEEEEeecCCCCCceeEEEEEeCC
Q 013270 180 QLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKL---RGFFER-FGEIETGPIGFDITTGKSRGFAIFVYKT 252 (446)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L---~~~F~~-~G~V~~v~i~~d~~~g~~kG~afV~F~~ 252 (446)
.-..++.+||..+.+..+ +..+.+ ++ .++.+..|...+.+.|++.+-+..
T Consensus 186 ---------------------rg~~~~~~l~~~va~r~~~~a~~~L~~~~~--~dv~i~~~~~~~~s~G~~i~L~ae 239 (326)
T cd00874 186 ---------------------RGISHAANLPPHVAERQAEAAAALLRKALG--LQIEIEPEDQSALGPGSGIVLWAE 239 (326)
T ss_pred ---------------------EEEEEEccCCHHHHHHHHHHHHHHHhhccC--CCeEEEEEecCCCCCCEEEEEEEE
Confidence 125678899988877554 445555 43 345555555557888988776653
No 267
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.57 E-value=94 Score=29.87 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=26.9
Q ss_pred EEEEeCCHHHHHHHHHhCCCcccCeEEEEEEcccCCC
Q 013270 246 AIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKN 282 (446)
Q Consensus 246 afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a~~~~~ 282 (446)
|||+|++..+|..|++.+.. .+.+.+.|..|-+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KRPNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CCCCCceEeeCCCccc
Confidence 79999999999999997652 2345667777766553
No 268
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.33 E-value=48 Score=28.82 Aligned_cols=73 Identities=15% Similarity=0.052 Sum_probs=48.2
Q ss_pred CCCeEEEeCCCCCCCHH-----HHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCc-cc
Q 013270 105 SQRKIFVHGLGWDTTQE-----SLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNR-MA 177 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~-----~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~-~i 177 (446)
-.+++++.+|+..+..+ ....+|..|-+..-.++++ +.++..|.|.+++.|..|...++.. |.|. .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 34678888888764322 2344555555444444432 4456789999999999999988755 8887 66
Q ss_pred eeeecc
Q 013270 178 SCQLAS 183 (446)
Q Consensus 178 ~v~~~~ 183 (446)
..-++.
T Consensus 83 k~yfaQ 88 (193)
T KOG4019|consen 83 KLYFAQ 88 (193)
T ss_pred EEEEcc
Confidence 666554
No 269
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=20.67 E-value=95 Score=33.42 Aligned_cols=7 Identities=14% Similarity=0.230 Sum_probs=3.2
Q ss_pred ccccCCC
Q 013270 395 QQHVYPN 401 (446)
Q Consensus 395 ~~~~~p~ 401 (446)
++++|+.
T Consensus 659 ~~~q~~~ 665 (756)
T KOG2375|consen 659 MRGQYAP 665 (756)
T ss_pred ccccccc
Confidence 4444444
Done!