Query 013270
Match_columns 446
No_of_seqs 384 out of 3308
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:25:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 3.8E-36 1.3E-40 269.5 20.5 178 103-284 10-187 (196)
2 4f02_A Polyadenylate-binding p 100.0 5.6E-36 1.9E-40 272.2 16.4 167 105-281 14-182 (213)
3 2cjk_A Nuclear polyadenylated 100.0 1.7E-35 5.7E-40 258.3 14.2 164 105-280 2-166 (167)
4 3md3_A Nuclear and cytoplasmic 100.0 1.1E-34 3.8E-39 252.6 18.7 163 107-278 1-165 (166)
5 1b7f_A Protein (SXL-lethal pro 100.0 1.8E-34 6E-39 252.0 18.5 163 105-277 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 3.4E-34 1.2E-38 249.7 19.3 162 106-277 2-167 (167)
7 2qfj_A FBP-interacting repress 100.0 9.9E-35 3.4E-39 264.4 15.8 179 105-283 27-208 (216)
8 3nmr_A Cugbp ELAV-like family 100.0 3.4E-33 1.2E-37 245.5 18.9 164 105-278 2-175 (175)
9 2yh0_A Splicing factor U2AF 65 100.0 3.5E-33 1.2E-37 250.5 12.8 171 105-282 3-196 (198)
10 2g4b_A Splicing factor U2AF 65 100.0 4.8E-32 1.7E-36 237.5 16.7 158 105-278 3-172 (172)
11 1fje_B Nucleolin RBD12, protei 100.0 1.4E-32 4.8E-37 241.8 11.2 165 102-280 9-174 (175)
12 3smz_A Protein raver-1, ribonu 100.0 2.2E-31 7.4E-36 252.8 19.6 172 103-282 92-266 (284)
13 3tyt_A Heterogeneous nuclear r 100.0 1.8E-31 6.3E-36 240.1 16.0 166 105-277 3-204 (205)
14 3pgw_A U1-A; protein-RNA compl 100.0 1E-30 3.5E-35 247.9 19.4 168 103-278 6-281 (282)
15 3sde_A Paraspeckle component 1 100.0 1.7E-30 6E-35 243.3 18.1 160 103-285 19-184 (261)
16 2ghp_A U4/U6 snRNA-associated 100.0 7E-31 2.4E-35 250.3 15.4 171 105-280 116-291 (292)
17 2adc_A Polypyrimidine tract-bi 100.0 3.7E-30 1.3E-34 236.4 17.6 169 102-280 30-228 (229)
18 3smz_A Protein raver-1, ribonu 100.0 6.5E-30 2.2E-34 242.6 19.8 155 105-282 21-177 (284)
19 1qm9_A Polypyrimidine tract-bi 100.0 2.4E-30 8.2E-35 232.2 14.3 166 105-280 2-197 (198)
20 2ghp_A U4/U6 snRNA-associated 100.0 4.9E-30 1.7E-34 244.5 16.8 163 101-283 36-200 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 4.9E-24 1.7E-28 183.9 14.7 144 135-284 2-154 (158)
22 4f25_A Polyadenylate-binding p 99.9 3.5E-22 1.2E-26 162.5 9.3 109 105-217 4-113 (115)
23 2i2y_A Fusion protein consists 99.8 2.1E-21 7.2E-26 165.8 9.5 132 144-281 9-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.8 4.9E-21 1.7E-25 151.1 10.2 81 199-279 17-98 (99)
25 2lxi_A RNA-binding protein 10; 99.8 8.2E-21 2.8E-25 147.5 7.0 83 201-283 1-86 (91)
26 2lea_A Serine/arginine-rich sp 99.8 2.2E-20 7.6E-25 156.1 8.5 124 150-284 6-131 (135)
27 4fxv_A ELAV-like protein 1; RN 99.8 5.6E-20 1.9E-24 145.0 10.0 81 103-183 16-97 (99)
28 3s8s_A Histone-lysine N-methyl 99.8 9.8E-20 3.3E-24 146.4 10.6 83 199-281 4-87 (110)
29 2lkz_A RNA-binding protein 5; 99.8 2.9E-20 9.9E-25 145.0 6.5 82 198-279 6-94 (95)
30 2dgs_A DAZ-associated protein 99.8 4.5E-19 1.5E-23 140.0 11.4 88 198-286 7-95 (99)
31 2cpz_A CUG triplet repeat RNA- 99.8 5.2E-19 1.8E-23 143.8 12.0 89 198-286 22-111 (115)
32 1whw_A Hypothetical protein ri 99.8 4.6E-19 1.6E-23 140.0 11.2 87 198-284 5-92 (99)
33 2dnz_A Probable RNA-binding pr 99.8 5.2E-19 1.8E-23 138.6 10.9 86 199-284 3-89 (95)
34 1x5t_A Splicing factor 3B subu 99.8 4.2E-19 1.4E-23 139.3 10.3 88 199-286 3-92 (96)
35 3s8s_A Histone-lysine N-methyl 99.8 3.8E-19 1.3E-23 143.0 10.1 80 104-183 4-84 (110)
36 3md1_A Nuclear and cytoplasmic 99.8 5.7E-19 1.9E-23 134.6 10.6 80 202-281 2-82 (83)
37 2cq0_A Eukaryotic translation 99.8 8.5E-19 2.9E-23 139.5 12.0 87 198-284 12-99 (103)
38 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-18 3.8E-23 141.8 12.9 90 197-286 11-101 (115)
39 1x5u_A Splicing factor 3B subu 99.8 7.4E-19 2.5E-23 140.4 11.4 89 197-285 11-100 (105)
40 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.1E-19 1.4E-23 141.1 9.6 89 198-286 9-98 (102)
41 2lxi_A RNA-binding protein 10; 99.8 1.3E-19 4.6E-24 140.6 6.3 80 106-185 1-83 (91)
42 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.2E-19 2.1E-23 135.7 9.9 82 199-280 4-86 (87)
43 2cpf_A RNA binding motif prote 99.8 6.8E-19 2.3E-23 138.7 10.0 87 199-285 3-93 (98)
44 2dnm_A SRP46 splicing factor; 99.8 5.1E-19 1.7E-23 140.8 9.3 88 198-285 10-98 (103)
45 2d9p_A Polyadenylate-binding p 99.8 1.3E-18 4.5E-23 138.4 11.7 88 197-286 11-99 (103)
46 2do4_A Squamous cell carcinoma 99.8 1.6E-18 5.4E-23 137.1 12.1 84 198-282 14-98 (100)
47 1x5s_A Cold-inducible RNA-bind 99.8 6.1E-19 2.1E-23 140.1 9.6 88 198-285 9-97 (102)
48 2hvz_A Splicing factor, argini 99.8 4.3E-19 1.5E-23 140.7 8.6 100 107-211 1-101 (101)
49 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.3E-19 2.1E-23 152.8 10.4 133 153-285 11-157 (165)
50 3p5t_L Cleavage and polyadenyl 99.8 1.8E-19 6.2E-24 139.7 6.2 81 202-282 2-85 (90)
51 3s7r_A Heterogeneous nuclear r 99.8 9.5E-19 3.2E-23 134.7 10.2 80 198-277 8-87 (87)
52 3s7r_A Heterogeneous nuclear r 99.8 9E-19 3.1E-23 134.8 9.9 81 102-182 7-87 (87)
53 2lkz_A RNA-binding protein 5; 99.8 2E-19 6.8E-24 140.3 6.2 81 103-183 6-93 (95)
54 2dng_A Eukaryotic translation 99.8 2.3E-18 7.7E-23 137.0 12.5 86 198-285 12-98 (103)
55 2cph_A RNA binding motif prote 99.8 1.4E-18 4.7E-23 139.3 11.3 89 197-285 11-102 (107)
56 2fy1_A RNA-binding motif prote 99.8 1.8E-18 6.3E-23 140.5 11.9 102 104-206 5-107 (116)
57 2cqd_A RNA-binding region cont 99.8 2.6E-18 9E-23 139.8 12.8 87 197-283 13-99 (116)
58 4f25_A Polyadenylate-binding p 99.8 8.5E-19 2.9E-23 142.4 9.9 82 200-283 4-86 (115)
59 2dgp_A Bruno-like 4, RNA bindi 99.8 9.4E-19 3.2E-23 140.0 9.9 89 198-286 10-102 (106)
60 2rs2_A Musashi-1, RNA-binding 99.8 8.7E-19 3E-23 140.8 9.6 87 197-283 21-107 (109)
61 1p27_B RNA-binding protein 8A; 99.8 1.4E-18 4.7E-23 139.0 10.6 85 198-282 20-105 (106)
62 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9E-19 3.1E-23 134.1 9.1 81 198-278 4-85 (85)
63 2x1f_A MRNA 3'-END-processing 99.8 1E-18 3.5E-23 137.1 9.5 83 200-282 1-84 (96)
64 3ns6_A Eukaryotic translation 99.8 4.1E-19 1.4E-23 140.5 7.0 83 199-281 4-94 (100)
65 1x4h_A RNA-binding protein 28; 99.8 2.4E-18 8.3E-23 138.8 11.6 89 198-286 12-107 (111)
66 2cqc_A Arginine/serine-rich sp 99.8 1.9E-18 6.3E-23 135.3 10.6 83 197-279 11-94 (95)
67 1wi8_A EIF-4B, eukaryotic tran 99.8 2.5E-18 8.5E-23 137.0 11.2 86 198-285 12-99 (104)
68 2cpe_A RNA-binding protein EWS 99.8 1.5E-18 5.1E-23 140.5 10.0 89 197-285 11-108 (113)
69 2dh8_A DAZ-associated protein 99.8 1.4E-18 4.7E-23 138.8 9.7 86 198-284 13-99 (105)
70 2dnh_A Bruno-like 5, RNA bindi 99.8 3.3E-18 1.1E-22 136.6 11.7 87 198-285 12-102 (105)
71 1oo0_B CG8781-PA, drosophila Y 99.8 1.8E-18 6E-23 139.4 10.0 86 198-283 23-109 (110)
72 2e5h_A Zinc finger CCHC-type a 99.8 1.9E-18 6.6E-23 135.0 9.8 81 198-278 13-94 (94)
73 2dhg_A TRNA selenocysteine ass 99.8 1.7E-18 5.8E-23 138.0 9.6 88 198-286 6-96 (104)
74 2rs2_A Musashi-1, RNA-binding 99.8 2.1E-18 7.1E-23 138.6 10.1 86 101-186 20-105 (109)
75 1s79_A Lupus LA protein; RRM, 99.8 2E-18 6.9E-23 136.9 9.8 80 103-183 8-87 (103)
76 2la6_A RNA-binding protein FUS 99.8 3.1E-18 1.1E-22 135.2 10.7 81 198-278 10-99 (99)
77 2dgs_A DAZ-associated protein 99.8 6.6E-18 2.3E-22 133.3 12.6 85 103-187 7-91 (99)
78 2jrs_A RNA-binding protein 39; 99.8 3.3E-18 1.1E-22 137.1 10.9 84 198-281 23-107 (108)
79 1sjq_A Polypyrimidine tract-bi 99.8 9.9E-19 3.4E-23 137.8 7.5 81 198-284 13-96 (105)
80 2fy1_A RNA-binding motif prote 99.8 3.6E-18 1.2E-22 138.8 10.9 86 198-284 4-90 (116)
81 1u6f_A Tcubp1, RNA-binding pro 99.8 4.8E-18 1.7E-22 142.9 12.0 89 197-285 38-127 (139)
82 2cqg_A TDP-43, TAR DNA-binding 99.8 7.5E-18 2.6E-22 134.0 12.5 85 198-283 12-96 (103)
83 2kxn_B Transformer-2 protein h 99.8 1.8E-18 6.1E-23 143.3 9.1 85 198-282 43-128 (129)
84 2cqd_A RNA-binding region cont 99.8 4.4E-18 1.5E-22 138.5 11.3 85 102-186 13-97 (116)
85 2div_A TRNA selenocysteine ass 99.8 3.2E-18 1.1E-22 135.1 10.1 85 198-282 6-96 (99)
86 2dnz_A Probable RNA-binding pr 99.8 6.9E-18 2.4E-22 132.1 11.9 84 104-187 3-87 (95)
87 3p5t_L Cleavage and polyadenyl 99.8 8E-19 2.7E-23 136.0 6.4 80 107-186 2-84 (90)
88 2m2b_A RNA-binding protein 10; 99.8 1.1E-18 3.9E-23 145.1 7.6 86 198-284 20-112 (131)
89 1x4d_A Matrin 3; structural ge 99.8 2.1E-18 7E-23 135.9 8.7 80 198-283 12-95 (102)
90 2cq0_A Eukaryotic translation 99.8 5.3E-18 1.8E-22 134.9 11.2 86 102-187 11-97 (103)
91 1x4b_A Heterogeneous nuclear r 99.8 3.1E-18 1.1E-22 139.4 10.0 87 198-284 24-110 (116)
92 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.4E-18 8.1E-23 132.4 8.9 80 105-184 5-85 (87)
93 2cq3_A RNA-binding protein 9; 99.8 8.9E-18 3E-22 133.6 12.4 87 197-285 11-98 (103)
94 1whw_A Hypothetical protein ri 99.8 4.9E-18 1.7E-22 134.0 10.8 85 103-187 5-90 (99)
95 2dgo_A Cytotoxic granule-assoc 99.8 8.1E-18 2.8E-22 136.7 12.3 87 102-188 11-98 (115)
96 4a8x_A RNA-binding protein wit 99.8 2.1E-18 7.2E-23 133.0 8.4 83 200-282 3-87 (88)
97 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.9E-18 2.3E-22 134.2 11.6 87 198-286 12-99 (103)
98 1s79_A Lupus LA protein; RRM, 99.8 1.7E-18 5.9E-23 137.3 8.0 80 198-279 8-88 (103)
99 3ucg_A Polyadenylate-binding p 99.7 4E-18 1.4E-22 131.7 9.7 81 200-281 5-86 (89)
100 3n9u_C Cleavage and polyadenyl 99.7 3.1E-18 1.1E-22 146.5 10.0 81 200-280 54-137 (156)
101 3lqv_A PRE-mRNA branch site pr 99.7 2.7E-18 9.3E-23 139.5 9.0 103 104-227 6-109 (115)
102 3pgw_S U1-70K; protein-RNA com 99.7 9.2E-19 3.1E-23 174.4 7.3 161 122-282 8-184 (437)
103 2cq1_A PTB-like protein L; RRM 99.7 5.4E-18 1.9E-22 133.6 10.3 82 198-285 12-96 (101)
104 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.3E-18 1.1E-22 131.0 8.7 80 103-182 4-84 (85)
105 2khc_A Testis-specific RNP-typ 99.7 3.8E-18 1.3E-22 139.2 9.7 82 197-278 36-118 (118)
106 3md1_A Nuclear and cytoplasmic 99.7 5E-18 1.7E-22 129.3 9.7 79 106-184 1-80 (83)
107 1p1t_A Cleavage stimulation fa 99.7 2.2E-18 7.5E-23 137.3 8.0 85 198-282 5-90 (104)
108 2cpz_A CUG triplet repeat RNA- 99.7 6.5E-18 2.2E-22 137.2 10.9 86 102-187 21-107 (115)
109 1x5u_A Splicing factor 3B subu 99.7 8.8E-18 3E-22 134.1 11.4 86 102-187 11-97 (105)
110 2cq4_A RNA binding motif prote 99.7 8.5E-19 2.9E-23 142.2 5.4 85 198-283 22-107 (114)
111 1x5t_A Splicing factor 3B subu 99.7 6.1E-18 2.1E-22 132.6 10.0 84 104-187 3-88 (96)
112 2dnm_A SRP46 splicing factor; 99.7 5.1E-18 1.7E-22 135.0 9.6 85 103-187 10-95 (103)
113 2hgn_A Heterogeneous nuclear r 99.7 8.3E-19 2.9E-23 146.4 5.2 124 148-282 1-125 (139)
114 2cqp_A RNA-binding protein 12; 99.7 5.9E-18 2E-22 133.3 9.9 83 198-280 12-95 (98)
115 2hgl_A HNRPF protein, heteroge 99.7 3.3E-18 1.1E-22 142.4 8.8 81 198-280 41-125 (136)
116 2ywk_A Putative RNA-binding pr 99.7 5.3E-18 1.8E-22 132.7 9.5 81 198-279 13-94 (95)
117 3r27_A HnRNP L, heterogeneous 99.7 4.6E-18 1.6E-22 132.6 8.9 78 198-281 18-98 (100)
118 3q2s_C Cleavage and polyadenyl 99.7 3.5E-18 1.2E-22 155.8 9.6 81 200-280 67-150 (229)
119 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-18 5.3E-23 130.2 6.0 76 202-277 1-76 (77)
120 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.4E-18 8.4E-23 129.1 7.1 76 107-182 1-76 (77)
121 2do0_A HnRNP M, heterogeneous 99.7 1.3E-17 4.3E-22 135.3 11.9 87 198-285 12-99 (114)
122 2do4_A Squamous cell carcinoma 99.7 1.1E-17 3.6E-22 132.4 11.1 83 102-185 13-96 (100)
123 2e5h_A Zinc finger CCHC-type a 99.7 7.4E-18 2.5E-22 131.6 9.8 80 103-182 13-93 (94)
124 2cpf_A RNA binding motif prote 99.7 8.9E-18 3E-22 132.3 10.3 84 104-187 3-90 (98)
125 2mss_A Protein (musashi1); RNA 99.7 2.6E-18 8.9E-23 128.2 6.8 74 203-277 1-75 (75)
126 3ns6_A Eukaryotic translation 99.7 1.8E-18 6.2E-23 136.7 6.3 79 105-183 5-91 (100)
127 2dnh_A Bruno-like 5, RNA bindi 99.7 1.6E-17 5.6E-22 132.5 11.8 85 102-187 11-99 (105)
128 1x5s_A Cold-inducible RNA-bind 99.7 7.1E-18 2.4E-22 133.9 9.6 85 103-187 9-94 (102)
129 1wg5_A Heterogeneous nuclear r 99.7 8.8E-18 3E-22 133.8 10.2 85 198-283 12-97 (104)
130 1x4h_A RNA-binding protein 28; 99.7 9.4E-18 3.2E-22 135.3 10.4 86 102-187 11-103 (111)
131 1p27_B RNA-binding protein 8A; 99.7 8.4E-18 2.9E-22 134.5 10.0 83 103-185 20-103 (106)
132 2div_A TRNA selenocysteine ass 99.7 1E-17 3.5E-22 132.2 10.3 83 103-185 6-94 (99)
133 2jrs_A RNA-binding protein 39; 99.7 9.7E-18 3.3E-22 134.4 10.3 84 101-184 21-105 (108)
134 2dgv_A HnRNP M, heterogeneous 99.7 9.7E-18 3.3E-22 130.4 9.9 83 198-282 5-88 (92)
135 1wex_A Hypothetical protein (r 99.7 1.1E-17 3.6E-22 132.8 10.3 83 198-286 12-97 (104)
136 2cqc_A Arginine/serine-rich sp 99.7 6.5E-18 2.2E-22 132.2 9.0 82 102-183 11-93 (95)
137 2la6_A RNA-binding protein FUS 99.7 9E-18 3.1E-22 132.5 9.8 81 102-182 9-98 (99)
138 2x1f_A MRNA 3'-END-processing 99.7 6.5E-18 2.2E-22 132.5 8.9 80 106-185 2-82 (96)
139 2ek1_A RNA-binding protein 12; 99.7 3.6E-18 1.2E-22 133.7 7.5 82 198-279 12-94 (95)
140 2dgx_A KIAA0430 protein; RRM d 99.7 7.4E-18 2.5E-22 132.2 9.1 83 198-283 6-93 (96)
141 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.9E-18 2E-22 134.4 8.7 85 103-187 9-94 (102)
142 1wez_A HnRNP H', FTP-3, hetero 99.7 8E-18 2.7E-22 133.4 9.4 82 198-282 12-94 (102)
143 2dgw_A Probable RNA-binding pr 99.7 1.9E-17 6.4E-22 128.5 11.1 81 198-281 7-88 (91)
144 2cph_A RNA binding motif prote 99.7 1.5E-17 5.2E-22 133.2 11.0 86 102-187 11-99 (107)
145 3ex7_B RNA-binding protein 8A; 99.7 7.1E-18 2.4E-22 139.4 9.2 87 198-284 19-106 (126)
146 1x4e_A RNA binding motif, sing 99.7 4.6E-18 1.6E-22 130.2 7.5 80 104-183 3-83 (85)
147 2ad9_A Polypyrimidine tract-bi 99.7 9.2E-18 3.1E-22 135.6 9.5 81 198-284 28-111 (119)
148 3ulh_A THO complex subunit 4; 99.7 1.2E-17 4E-22 133.8 10.1 80 198-278 26-106 (107)
149 2d9p_A Polyadenylate-binding p 99.7 2.1E-17 7.2E-22 131.4 11.5 84 103-188 12-96 (103)
150 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.8E-17 6E-22 142.3 11.8 85 198-282 36-121 (156)
151 2mss_A Protein (musashi1); RNA 99.7 5.4E-18 1.9E-22 126.5 7.4 75 108-182 1-75 (75)
152 1x4a_A Splicing factor, argini 99.7 1.8E-17 6.3E-22 133.2 11.0 84 197-283 18-102 (109)
153 2cqg_A TDP-43, TAR DNA-binding 99.7 2.5E-17 8.4E-22 131.0 11.5 84 103-187 12-95 (103)
154 1wez_A HnRNP H', FTP-3, hetero 99.7 1.2E-17 4.2E-22 132.2 9.7 81 103-185 12-92 (102)
155 1x4f_A Matrin 3; structural ge 99.7 8.1E-18 2.8E-22 134.4 8.6 81 198-284 22-106 (112)
156 2khc_A Testis-specific RNP-typ 99.7 1.1E-17 3.7E-22 136.6 9.6 80 103-182 37-117 (118)
157 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.7E-17 1.3E-21 137.6 13.1 82 196-277 58-140 (140)
158 2dh8_A DAZ-associated protein 99.7 8.7E-18 3E-22 134.1 8.6 85 103-187 13-97 (105)
159 2dgp_A Bruno-like 4, RNA bindi 99.7 1.2E-17 4E-22 133.6 9.3 86 102-187 9-98 (106)
160 3n9u_C Cleavage and polyadenyl 99.7 1E-17 3.6E-22 143.2 9.5 79 105-183 54-135 (156)
161 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.8E-18 1.3E-22 134.9 6.2 82 198-281 16-99 (100)
162 1wg5_A Heterogeneous nuclear r 99.7 2.9E-17 9.8E-22 130.8 11.4 82 103-185 12-94 (104)
163 2kxn_B Transformer-2 protein h 99.7 1.2E-17 4.1E-22 138.3 9.5 84 102-185 42-126 (129)
164 2dis_A Unnamed protein product 99.7 1.5E-17 5.2E-22 133.7 9.8 86 198-283 5-95 (109)
165 2dng_A Eukaryotic translation 99.7 3.3E-17 1.1E-21 130.3 11.6 83 103-187 12-95 (103)
166 2jwn_A Embryonic polyadenylate 99.7 1.9E-17 6.4E-22 136.4 10.4 84 198-282 33-117 (124)
167 2wbr_A GW182, gawky, LD47780P; 99.7 5.4E-18 1.9E-22 127.3 6.3 73 200-278 6-79 (89)
168 1u6f_A Tcubp1, RNA-binding pro 99.7 2.4E-17 8.4E-22 138.6 11.1 87 102-188 38-125 (139)
169 2cpi_A CCR4-NOT transcription 99.7 1.4E-17 4.7E-22 134.3 9.2 85 198-282 12-103 (111)
170 1iqt_A AUF1, heterogeneous nuc 99.7 3.7E-18 1.3E-22 127.4 5.4 75 203-277 1-75 (75)
171 3ucg_A Polyadenylate-binding p 99.7 1.9E-17 6.4E-22 127.9 9.5 79 105-184 5-84 (89)
172 1sjq_A Polypyrimidine tract-bi 99.7 1.1E-17 3.7E-22 131.8 8.1 81 102-188 12-95 (105)
173 1x4e_A RNA binding motif, sing 99.7 2.2E-18 7.7E-23 131.9 4.1 80 199-278 3-83 (85)
174 2cpy_A RNA-binding protein 12; 99.7 1E-17 3.5E-22 135.8 8.1 82 198-281 12-95 (114)
175 2cpe_A RNA-binding protein EWS 99.7 1.7E-17 5.8E-22 134.3 9.4 86 102-187 11-105 (113)
176 1x4b_A Heterogeneous nuclear r 99.7 5.1E-17 1.8E-21 132.1 12.3 82 106-187 27-108 (116)
177 2ki2_A SS-DNA binding protein 99.7 2.6E-18 8.9E-23 133.1 4.3 80 202-282 2-82 (90)
178 1iqt_A AUF1, heterogeneous nuc 99.7 4.9E-18 1.7E-22 126.7 5.4 75 108-182 1-75 (75)
179 2fc9_A NCL protein; structure 99.7 3.5E-17 1.2E-21 129.6 10.6 83 198-284 12-95 (101)
180 1x5o_A RNA binding motif, sing 99.7 3.5E-17 1.2E-21 132.7 10.9 82 198-280 22-112 (114)
181 1wi8_A EIF-4B, eukaryotic tran 99.7 3.3E-17 1.1E-21 130.5 10.5 82 104-187 13-96 (104)
182 1oo0_B CG8781-PA, drosophila Y 99.7 1.6E-17 5.6E-22 133.7 8.8 83 103-185 23-106 (110)
183 2cpx_A Hypothetical protein FL 99.7 1.1E-17 3.9E-22 135.8 7.8 89 198-286 22-111 (115)
184 2ywk_A Putative RNA-binding pr 99.7 1.7E-17 5.8E-22 129.9 8.4 80 103-183 13-93 (95)
185 2dhg_A TRNA selenocysteine ass 99.7 5.3E-17 1.8E-21 129.3 11.3 84 103-187 6-92 (104)
186 1p1t_A Cleavage stimulation fa 99.7 2.4E-17 8.2E-22 131.3 9.3 80 105-184 7-87 (104)
187 2kt5_A RNA and export factor-b 99.7 5E-17 1.7E-21 133.8 11.5 85 197-282 31-116 (124)
188 2cpy_A RNA-binding protein 12; 99.7 1.3E-17 4.5E-22 135.1 7.8 81 103-184 12-93 (114)
189 2cqp_A RNA-binding protein 12; 99.7 1.7E-17 5.7E-22 130.7 8.2 82 103-184 12-94 (98)
190 4a8x_A RNA-binding protein wit 99.7 2E-17 6.8E-22 127.4 8.2 80 105-184 3-84 (88)
191 1wel_A RNA-binding protein 12; 99.7 1.4E-17 5E-22 137.0 7.8 82 198-280 22-104 (124)
192 2db1_A Heterogeneous nuclear r 99.7 2.2E-17 7.7E-22 134.5 8.8 81 198-280 14-98 (118)
193 2cq3_A RNA-binding protein 9; 99.7 7.5E-17 2.6E-21 128.1 11.5 86 101-188 10-96 (103)
194 2ek1_A RNA-binding protein 12; 99.7 1.3E-17 4.4E-22 130.5 6.8 79 105-183 14-93 (95)
195 2dgw_A Probable RNA-binding pr 99.7 5.9E-17 2E-21 125.7 10.5 80 103-185 7-87 (91)
196 2fc8_A NCL protein; structure 99.7 7.7E-17 2.6E-21 127.8 11.4 84 198-284 12-96 (102)
197 2dgv_A HnRNP M, heterogeneous 99.7 5.4E-17 1.9E-21 126.1 10.3 81 104-186 6-87 (92)
198 2do0_A HnRNP M, heterogeneous 99.7 8.9E-17 3E-21 130.2 11.9 82 103-185 12-94 (114)
199 2dis_A Unnamed protein product 99.7 5.4E-17 1.8E-21 130.4 10.4 85 103-187 5-94 (109)
200 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.1E-17 7.1E-22 130.6 7.8 80 103-184 16-97 (100)
201 2m2b_A RNA-binding protein 10; 99.7 2E-17 7E-22 137.5 8.2 81 104-185 21-108 (131)
202 1fj7_A Nucleolin RBD1, protein 99.7 6.4E-18 2.2E-22 133.9 4.7 84 198-283 14-98 (101)
203 2err_A Ataxin-2-binding protei 99.7 2.5E-17 8.4E-22 132.3 8.2 83 196-280 24-107 (109)
204 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.7E-17 2.3E-21 138.7 11.5 85 102-186 35-120 (156)
205 3q2s_C Cleavage and polyadenyl 99.7 2.6E-17 8.8E-22 150.1 9.3 79 105-183 67-148 (229)
206 3ulh_A THO complex subunit 4; 99.7 4.1E-17 1.4E-21 130.7 9.3 80 103-183 26-106 (107)
207 2dnn_A RNA-binding protein 12; 99.7 3.6E-17 1.2E-21 130.8 8.9 79 198-279 13-92 (109)
208 2dnq_A RNA-binding protein 4B; 99.7 5.9E-17 2E-21 125.4 9.8 79 198-284 5-84 (90)
209 3ex7_B RNA-binding protein 8A; 99.7 4E-17 1.4E-21 134.8 9.4 87 102-188 18-105 (126)
210 2hgl_A HNRPF protein, heteroge 99.7 3.3E-17 1.1E-21 136.3 8.9 79 103-183 41-123 (136)
211 2ki2_A SS-DNA binding protein 99.7 1.1E-17 3.8E-22 129.5 5.6 79 107-186 2-81 (90)
212 2cq4_A RNA binding motif prote 99.7 1.1E-17 3.7E-22 135.7 5.7 79 105-184 24-103 (114)
213 1x4c_A Splicing factor, argini 99.7 9.4E-17 3.2E-21 128.7 11.2 82 198-286 12-99 (108)
214 2hgm_A HNRPF protein, heteroge 99.7 3.5E-17 1.2E-21 133.9 8.7 79 103-183 39-119 (126)
215 2cpj_A Non-POU domain-containi 99.7 6.4E-17 2.2E-21 127.6 9.8 81 198-284 12-93 (99)
216 2jwn_A Embryonic polyadenylate 99.7 7.9E-17 2.7E-21 132.6 10.7 80 106-186 36-116 (124)
217 2nlw_A Eukaryotic translation 99.7 3.5E-17 1.2E-21 130.5 8.3 82 198-281 12-101 (105)
218 2cqi_A Nucleolysin TIAR; RNA r 99.7 7.1E-17 2.4E-21 128.3 10.0 83 102-186 11-94 (103)
219 2lea_A Serine/arginine-rich sp 99.7 3.3E-17 1.1E-21 136.8 8.1 84 104-187 45-129 (135)
220 2hgm_A HNRPF protein, heteroge 99.7 1.3E-17 4.3E-22 136.6 5.3 82 198-281 39-122 (126)
221 1x4g_A Nucleolysin TIAR; struc 99.7 6.4E-17 2.2E-21 130.0 9.3 81 198-284 22-103 (109)
222 2db1_A Heterogeneous nuclear r 99.7 4.3E-17 1.5E-21 132.8 8.3 79 104-183 15-96 (118)
223 2kt5_A RNA and export factor-b 99.7 1.2E-16 3.9E-21 131.6 11.0 84 103-187 32-116 (124)
224 2a3j_A U1 small nuclear ribonu 99.7 5.5E-17 1.9E-21 133.4 8.8 82 198-282 26-112 (127)
225 2lmi_A GRSF-1, G-rich sequence 99.7 1.8E-17 6.3E-22 132.6 5.7 81 198-280 8-92 (107)
226 1wf1_A RNA-binding protein RAL 99.7 1.1E-16 3.8E-21 128.8 10.4 97 172-283 5-103 (110)
227 1why_A Hypothetical protein ri 99.7 1.2E-16 4E-21 125.5 10.2 79 198-282 14-95 (97)
228 2krb_A Eukaryotic translation 99.7 5.3E-17 1.8E-21 123.0 7.8 72 106-179 1-80 (81)
229 2lmi_A GRSF-1, G-rich sequence 99.7 4.3E-17 1.5E-21 130.5 7.7 80 103-183 8-90 (107)
230 2ad9_A Polypyrimidine tract-bi 99.7 6.8E-17 2.3E-21 130.5 8.8 80 103-188 28-110 (119)
231 2dha_A FLJ20171 protein; RRM d 99.7 4.1E-17 1.4E-21 133.3 7.5 79 104-183 21-103 (123)
232 2wbr_A GW182, gawky, LD47780P; 99.7 3.3E-17 1.1E-21 123.0 6.3 73 104-182 5-78 (89)
233 2krb_A Eukaryotic translation 99.7 2.8E-17 9.7E-22 124.5 5.9 73 201-275 1-81 (81)
234 1wel_A RNA-binding protein 12; 99.7 4.6E-17 1.6E-21 134.0 7.6 80 104-183 23-102 (124)
235 2dgx_A KIAA0430 protein; RRM d 99.7 5.7E-17 1.9E-21 127.1 7.7 79 104-185 7-90 (96)
236 2kn4_A Immunoglobulin G-bindin 99.7 9.3E-17 3.2E-21 138.1 9.8 85 103-187 67-152 (158)
237 2dha_A FLJ20171 protein; RRM d 99.7 4E-17 1.4E-21 133.4 7.0 81 199-280 21-105 (123)
238 2lcw_A RNA-binding protein FUS 99.5 2.7E-18 9.1E-23 139.7 0.0 86 198-283 4-98 (116)
239 2cpi_A CCR4-NOT transcription 99.7 5.9E-17 2E-21 130.6 7.9 85 102-186 11-102 (111)
240 2ytc_A PRE-mRNA-splicing facto 99.7 1.3E-16 4.5E-21 122.0 9.4 75 198-278 9-85 (85)
241 2hvz_A Splicing factor, argini 99.7 7.3E-17 2.5E-21 127.7 8.2 78 202-284 1-79 (101)
242 2jvr_A Nucleolar protein 3; RN 99.7 5.5E-17 1.9E-21 130.0 7.4 79 198-280 25-105 (111)
243 2dgt_A RNA-binding protein 30; 99.7 2E-16 6.9E-21 122.9 10.5 79 198-284 7-86 (92)
244 2dnn_A RNA-binding protein 12; 99.7 7.1E-17 2.4E-21 129.0 8.1 76 106-183 16-91 (109)
245 3r27_A HnRNP L, heterogeneous 99.7 1.1E-16 3.8E-21 124.7 8.9 77 102-184 17-96 (100)
246 1x5o_A RNA binding motif, sing 99.7 2.2E-16 7.6E-21 127.9 11.1 80 103-183 22-110 (114)
247 2e5j_A Methenyltetrahydrofolat 99.7 1.5E-16 5.3E-21 124.9 9.5 80 198-282 16-96 (97)
248 2xs2_A Deleted in azoospermia- 99.7 5.8E-17 2E-21 128.6 7.1 84 198-283 6-89 (102)
249 2cq1_A PTB-like protein L; RRM 99.7 2.3E-16 8E-21 124.2 10.4 79 103-187 12-93 (101)
250 2cpd_A Apobec-1 stimulating pr 99.7 2.9E-16 9.9E-21 123.8 11.0 79 197-283 11-92 (99)
251 2err_A Ataxin-2-binding protei 99.7 8.8E-17 3E-21 129.1 8.0 83 100-184 23-106 (109)
252 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-16 3.8E-21 134.7 8.8 80 103-182 60-140 (140)
253 2j8a_A Histone-lysine N-methyl 99.7 8.5E-17 2.9E-21 128.9 7.6 79 202-280 3-96 (136)
254 1x4a_A Splicing factor, argini 99.7 2.6E-16 8.9E-21 126.4 10.4 82 103-187 19-101 (109)
255 1wex_A Hypothetical protein (r 99.7 2.5E-16 8.6E-21 124.8 9.9 79 103-187 12-93 (104)
256 2jvo_A Nucleolar protein 3; nu 99.7 1.5E-16 5.3E-21 127.3 8.5 80 196-283 26-106 (108)
257 1x4d_A Matrin 3; structural ge 99.7 1.1E-16 3.9E-21 125.9 7.6 76 104-185 13-92 (102)
258 2hgn_A Heterogeneous nuclear r 99.7 6.7E-17 2.3E-21 134.9 6.6 80 104-185 44-123 (139)
259 2nlw_A Eukaryotic translation 99.7 9.8E-17 3.4E-21 127.9 7.3 79 103-183 12-98 (105)
260 2cpx_A Hypothetical protein FL 99.7 1E-16 3.5E-21 130.1 7.5 85 103-187 22-107 (115)
261 2voo_A Lupus LA protein; RNA-b 99.7 4.8E-16 1.7E-20 137.8 12.4 122 157-280 63-187 (193)
262 2dnp_A RNA-binding protein 14; 99.7 2.7E-16 9.3E-21 121.6 9.3 78 198-283 6-84 (90)
263 1fjc_A Nucleolin RBD2, protein 99.7 1.6E-16 5.3E-21 124.6 8.0 81 198-283 13-94 (96)
264 2dgu_A Heterogeneous nuclear r 99.7 2.9E-16 9.9E-21 124.7 9.7 81 198-286 8-89 (103)
265 2la4_A Nuclear and cytoplasmic 99.7 1E-16 3.5E-21 126.9 6.6 77 198-280 24-101 (101)
266 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.4E-16 8.3E-21 136.4 9.5 85 103-187 69-154 (165)
267 2xs2_A Deleted in azoospermia- 99.7 6.6E-17 2.3E-21 128.2 5.4 79 105-185 8-86 (102)
268 1fj7_A Nucleolin RBD1, protein 99.7 3.5E-17 1.2E-21 129.6 3.7 82 103-186 14-96 (101)
269 2fc9_A NCL protein; structure 99.7 4E-16 1.4E-20 123.5 9.7 81 102-186 11-92 (101)
270 4f02_A Polyadenylate-binding p 99.7 3.5E-16 1.2E-20 141.4 10.5 84 198-281 12-96 (213)
271 3lqv_A PRE-mRNA branch site pr 99.7 2E-16 6.9E-21 128.3 8.0 83 198-283 5-88 (115)
272 1nu4_A U1A RNA binding domain; 99.6 1.3E-16 4.3E-21 125.3 6.5 82 198-282 5-91 (97)
273 2dnq_A RNA-binding protein 4B; 99.6 7.1E-16 2.4E-20 119.2 10.7 77 103-187 5-82 (90)
274 2a3j_A U1 small nuclear ribonu 99.6 3.6E-16 1.2E-20 128.5 9.5 79 104-185 27-110 (127)
275 3d2w_A TAR DNA-binding protein 99.6 2.3E-16 7.8E-21 121.6 7.8 80 198-283 8-87 (89)
276 2xnq_A Nuclear polyadenylated 99.6 4.2E-16 1.4E-20 122.3 9.4 76 198-281 19-96 (97)
277 1whx_A Hypothetical protein ri 99.6 2.3E-16 7.9E-21 127.0 8.0 77 199-281 8-85 (111)
278 2kvi_A Nuclear polyadenylated 99.6 2E-16 6.7E-21 124.0 7.3 78 198-283 7-86 (96)
279 2jvr_A Nucleolar protein 3; RN 99.6 2.2E-16 7.5E-21 126.5 7.6 79 103-185 25-105 (111)
280 1x4f_A Matrin 3; structural ge 99.6 2.8E-16 9.7E-21 125.4 8.2 77 103-185 22-102 (112)
281 2j8a_A Histone-lysine N-methyl 99.6 2.2E-16 7.4E-21 126.6 6.9 76 107-182 3-93 (136)
282 2f3j_A RNA and export factor b 99.6 3.6E-16 1.2E-20 136.6 8.9 83 198-281 85-168 (177)
283 2lcw_A RNA-binding protein FUS 99.4 1.5E-17 5.1E-22 135.3 0.0 85 103-187 4-97 (116)
284 2fc8_A NCL protein; structure 99.6 6.8E-16 2.3E-20 122.3 9.5 83 102-187 11-94 (102)
285 2e5g_A U6 snRNA-specific termi 99.6 6.9E-16 2.4E-20 120.4 9.4 80 198-283 5-85 (94)
286 1why_A Hypothetical protein ri 99.6 7.2E-16 2.5E-20 121.0 9.4 77 103-185 14-93 (97)
287 1x4c_A Splicing factor, argini 99.6 1E-15 3.4E-20 122.7 10.4 77 104-187 13-95 (108)
288 2ytc_A PRE-mRNA-splicing facto 99.6 9.4E-16 3.2E-20 117.2 9.7 74 103-182 9-84 (85)
289 2cq2_A Hypothetical protein LO 99.6 4.6E-16 1.6E-20 124.3 8.0 78 198-281 22-107 (114)
290 1x5p_A Negative elongation fac 99.6 1.7E-15 5.8E-20 118.8 11.1 80 198-285 12-92 (97)
291 1x4g_A Nucleolysin TIAR; struc 99.6 6.4E-16 2.2E-20 124.1 8.7 80 102-187 21-101 (109)
292 1sjr_A Polypyrimidine tract-bi 99.6 1.2E-15 4E-20 129.5 10.7 82 198-283 43-127 (164)
293 1wf0_A TDP-43, TAR DNA-binding 99.6 2.7E-16 9.2E-21 121.1 6.2 80 199-284 3-82 (88)
294 2cqh_A IGF-II mRNA-binding pro 99.6 5.3E-16 1.8E-20 120.7 7.9 81 198-285 5-88 (93)
295 2la4_A Nuclear and cytoplasmic 99.6 6E-16 2.1E-20 122.4 8.3 75 103-183 24-99 (101)
296 2cpj_A Non-POU domain-containi 99.6 1.1E-15 3.7E-20 120.5 9.6 78 103-186 12-90 (99)
297 1l3k_A Heterogeneous nuclear r 99.6 1.1E-15 3.8E-20 135.9 10.9 84 198-281 10-93 (196)
298 2dnl_A Cytoplasmic polyadenyla 99.6 4.7E-16 1.6E-20 125.9 7.4 77 104-182 6-85 (114)
299 3egn_A RNA-binding protein 40; 99.6 1.5E-16 5.3E-21 134.3 4.6 86 198-283 42-133 (143)
300 2dnl_A Cytoplasmic polyadenyla 99.6 5.4E-16 1.8E-20 125.6 7.5 81 198-280 5-88 (114)
301 3zzy_A Polypyrimidine tract-bi 99.6 2E-15 6.9E-20 123.4 10.9 85 198-287 25-113 (130)
302 1wg1_A KIAA1579 protein, homol 99.6 1E-15 3.4E-20 117.9 8.6 75 200-281 4-79 (88)
303 2e5j_A Methenyltetrahydrofolat 99.6 1.1E-15 3.9E-20 119.9 9.0 78 103-185 16-94 (97)
304 2jvo_A Nucleolar protein 3; nu 99.6 8.8E-16 3E-20 122.9 8.5 79 100-186 25-104 (108)
305 1fxl_A Paraneoplastic encephal 99.6 1.4E-15 4.7E-20 131.5 10.4 82 201-282 2-84 (167)
306 2e44_A Insulin-like growth fac 99.6 9E-16 3.1E-20 120.2 8.2 80 198-281 12-93 (96)
307 1whx_A Hypothetical protein ri 99.6 8.3E-16 2.8E-20 123.7 7.9 76 104-185 8-84 (111)
308 1b7f_A Protein (SXL-lethal pro 99.6 1.1E-15 3.6E-20 132.5 9.2 83 200-282 2-85 (168)
309 2f3j_A RNA and export factor b 99.6 1.1E-15 3.9E-20 133.4 9.3 81 103-184 85-166 (177)
310 2e5g_A U6 snRNA-specific termi 99.6 4E-15 1.4E-19 116.0 11.4 77 104-186 6-83 (94)
311 2kvi_A Nuclear polyadenylated 99.6 1.6E-15 5.4E-20 118.8 9.1 77 103-187 7-85 (96)
312 1nu4_A U1A RNA binding domain; 99.6 4.9E-16 1.7E-20 121.9 5.8 80 103-185 5-89 (97)
313 2diu_A KIAA0430 protein; struc 99.6 1.7E-15 5.7E-20 114.8 8.3 78 200-287 7-91 (96)
314 2dgt_A RNA-binding protein 30; 99.6 2.3E-15 7.7E-20 116.9 9.3 78 102-187 6-84 (92)
315 1fjc_A Nucleolin RBD2, protein 99.6 8E-16 2.7E-20 120.5 6.8 78 103-185 13-91 (96)
316 2pe8_A Splicing factor 45; RRM 99.6 2.5E-15 8.6E-20 119.2 9.7 82 198-279 5-93 (105)
317 2xnq_A Nuclear polyadenylated 99.6 2.4E-15 8.4E-20 117.9 9.4 76 101-184 17-94 (97)
318 2dnp_A RNA-binding protein 14; 99.6 2E-15 7E-20 116.6 8.5 77 102-186 5-82 (90)
319 3d2w_A TAR DNA-binding protein 99.6 1.2E-15 4.1E-20 117.5 6.9 76 103-184 8-83 (89)
320 2e5i_A Heterogeneous nuclear r 99.6 6.4E-15 2.2E-19 119.9 11.5 79 199-283 23-105 (124)
321 2dgu_A Heterogeneous nuclear r 99.6 3E-15 1E-19 118.8 9.4 77 104-188 9-86 (103)
322 2voo_A Lupus LA protein; RNA-b 99.6 3.2E-15 1.1E-19 132.5 10.2 78 106-184 109-186 (193)
323 2cpd_A Apobec-1 stimulating pr 99.6 5.3E-15 1.8E-19 116.5 10.2 76 103-186 12-90 (99)
324 3beg_B Splicing factor, argini 99.6 1.4E-15 4.9E-20 123.2 7.1 78 199-283 14-97 (115)
325 3pgw_S U1-70K; protein-RNA com 99.6 4.5E-15 1.5E-19 147.8 11.5 83 103-185 99-182 (437)
326 1wf1_A RNA-binding protein RAL 99.6 4.3E-15 1.5E-19 119.4 9.2 74 104-185 25-100 (110)
327 1wg1_A KIAA1579 protein, homol 99.6 2.7E-15 9.3E-20 115.4 7.6 74 104-184 3-77 (88)
328 3egn_A RNA-binding protein 40; 99.6 3.5E-16 1.2E-20 132.1 2.8 84 103-186 42-131 (143)
329 1wf0_A TDP-43, TAR DNA-binding 99.6 2.1E-15 7.3E-20 116.0 6.7 76 105-186 4-79 (88)
330 2cqh_A IGF-II mRNA-binding pro 99.6 2.5E-15 8.7E-20 116.9 7.1 78 103-187 5-85 (93)
331 2i2y_A Fusion protein consists 99.6 3.4E-15 1.2E-19 127.1 8.5 78 102-184 69-147 (150)
332 2qfj_A FBP-interacting repress 99.6 8.7E-15 3E-19 132.2 11.2 84 104-187 123-207 (216)
333 3md3_A Nuclear and cytoplasmic 99.6 6.6E-15 2.2E-19 127.1 9.8 82 102-183 83-165 (166)
334 2hzc_A Splicing factor U2AF 65 99.6 4.8E-15 1.7E-19 113.7 7.4 71 199-276 4-86 (87)
335 1x5p_A Negative elongation fac 99.6 2E-14 6.8E-19 112.7 10.7 77 103-187 12-89 (97)
336 3beg_B Splicing factor, argini 99.6 3.3E-15 1.1E-19 121.1 6.4 70 105-181 15-85 (115)
337 2g4b_A Splicing factor U2AF 65 99.6 5.4E-15 1.8E-19 128.6 8.0 80 104-183 92-172 (172)
338 2cq2_A Hypothetical protein LO 99.6 4.8E-15 1.7E-19 118.4 7.0 78 103-186 22-107 (114)
339 2cjk_A Nuclear polyadenylated 99.6 5.1E-15 1.7E-19 128.1 7.5 80 105-184 86-165 (167)
340 2e44_A Insulin-like growth fac 99.5 6.4E-15 2.2E-19 115.3 7.1 78 104-185 13-92 (96)
341 3tyt_A Heterogeneous nuclear r 99.5 7.3E-15 2.5E-19 131.6 8.4 77 200-281 3-81 (205)
342 2bz2_A Negative elongation fac 99.5 1.1E-14 3.6E-19 119.0 8.1 77 198-282 36-113 (121)
343 1sjr_A Polypyrimidine tract-bi 99.5 2.5E-14 8.7E-19 121.3 10.5 78 105-186 45-125 (164)
344 3u1l_A PRE-mRNA-splicing facto 99.5 1.8E-14 6.3E-19 130.5 10.0 79 198-282 131-231 (240)
345 2hzc_A Splicing factor U2AF 65 99.5 8.1E-15 2.8E-19 112.4 6.4 71 104-181 4-86 (87)
346 2yh0_A Splicing factor U2AF 65 99.5 2.7E-14 9.1E-19 127.2 10.0 82 104-185 112-194 (198)
347 3nmr_A Cugbp ELAV-like family 99.5 2.1E-14 7.2E-19 125.1 9.1 83 200-282 2-90 (175)
348 2diu_A KIAA0430 protein; struc 99.5 2.8E-14 9.5E-19 108.1 8.4 72 106-187 9-86 (96)
349 2pe8_A Splicing factor 45; RRM 99.5 4.1E-14 1.4E-18 112.2 9.4 80 104-183 6-92 (105)
350 2dit_A HIV TAT specific factor 99.5 9E-14 3.1E-18 112.0 11.5 82 198-283 12-105 (112)
351 3zzy_A Polypyrimidine tract-bi 99.5 6E-14 2E-18 114.6 10.2 77 105-186 27-107 (130)
352 3pgw_A U1-A; protein-RNA compl 99.5 6.3E-14 2.2E-18 132.1 10.2 82 198-282 6-92 (282)
353 3v4m_A Splicing factor U2AF 65 99.5 3.8E-14 1.3E-18 112.5 7.2 82 199-280 3-97 (105)
354 2bz2_A Negative elongation fac 99.5 7.2E-14 2.4E-18 114.0 9.1 76 103-186 36-112 (121)
355 3ue2_A Poly(U)-binding-splicin 99.5 1E-13 3.5E-18 112.1 8.4 81 199-279 18-108 (118)
356 2e5i_A Heterogeneous nuclear r 99.5 2.6E-13 8.8E-18 110.4 10.6 74 107-186 26-103 (124)
357 3u1l_A PRE-mRNA-splicing facto 99.5 8.4E-14 2.9E-18 126.2 8.0 79 103-187 131-231 (240)
358 1jmt_A Splicing factor U2AF 35 99.4 4.4E-14 1.5E-18 111.9 4.8 71 206-277 20-103 (104)
359 2adc_A Polypyrimidine tract-bi 99.4 1.1E-13 3.6E-18 126.5 7.6 79 198-281 31-111 (229)
360 1fje_B Nucleolin RBD12, protei 99.4 2.3E-13 7.9E-18 118.6 7.5 77 103-184 96-173 (175)
361 1qm9_A Polypyrimidine tract-bi 99.4 2.1E-13 7.2E-18 121.5 7.1 78 200-282 2-81 (198)
362 3sde_A Paraspeckle component 1 99.4 5.3E-13 1.8E-17 124.3 9.6 78 198-281 19-97 (261)
363 2d9o_A DNAJ (HSP40) homolog, s 99.4 1E-12 3.4E-17 102.9 9.4 68 211-284 27-94 (100)
364 2dit_A HIV TAT specific factor 99.4 2.4E-12 8.3E-17 103.5 10.4 80 102-185 11-102 (112)
365 3v4m_A Splicing factor U2AF 65 99.4 9E-13 3.1E-17 104.5 6.9 80 104-183 3-95 (105)
366 3ue2_A Poly(U)-binding-splicin 99.3 1.9E-12 6.5E-17 104.6 7.6 79 105-183 19-107 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.5E-11 5.1E-16 96.1 12.1 76 106-187 10-92 (100)
368 1jmt_A Splicing factor U2AF 35 99.3 3.4E-13 1.2E-17 106.7 2.1 71 111-182 20-103 (104)
369 3tht_A Alkylated DNA repair pr 99.3 5.2E-12 1.8E-16 120.6 8.0 75 198-278 15-97 (345)
370 3s6e_A RNA-binding protein 39; 99.3 7.5E-12 2.5E-16 100.4 7.6 79 198-280 4-93 (114)
371 3tht_A Alkylated DNA repair pr 99.2 3.4E-11 1.2E-15 115.0 8.6 74 103-182 15-96 (345)
372 1owx_A Lupus LA protein, SS-B, 99.1 2.1E-10 7.3E-15 92.0 7.7 75 198-278 15-94 (121)
373 3s6e_A RNA-binding protein 39; 99.1 2.2E-10 7.5E-15 91.8 7.6 76 104-183 5-91 (114)
374 2dnr_A Synaptojanin-1; RRM dom 99.0 4.7E-10 1.6E-14 84.2 6.9 74 198-280 4-86 (91)
375 1owx_A Lupus LA protein, SS-B, 99.0 1E-09 3.5E-14 88.0 8.0 74 103-182 15-93 (121)
376 3dxb_A Thioredoxin N-terminall 98.9 3.7E-09 1.3E-13 95.7 7.6 68 212-279 140-212 (222)
377 1ufw_A Synaptojanin 2; RNP dom 98.8 2.1E-09 7.3E-14 80.9 4.6 73 198-279 12-94 (95)
378 2dnr_A Synaptojanin-1; RRM dom 98.8 9.3E-09 3.2E-13 77.1 6.9 74 104-185 5-86 (91)
379 3dxb_A Thioredoxin N-terminall 98.6 6.1E-08 2.1E-12 87.6 7.3 66 118-183 141-211 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.6 2.4E-08 8.2E-13 75.2 3.3 73 103-183 12-93 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.5 1.2E-06 4E-11 66.8 10.2 89 104-214 6-99 (104)
382 2l9w_A U4/U6 snRNA-associated- 98.4 5.5E-07 1.9E-11 69.1 7.1 74 198-277 18-97 (117)
383 2l9w_A U4/U6 snRNA-associated- 97.9 1.8E-05 6.2E-10 60.7 6.0 73 104-182 19-97 (117)
384 2dhx_A Poly (ADP-ribose) polym 97.8 0.00019 6.4E-09 54.7 9.5 80 198-285 5-89 (104)
385 1wey_A Calcipressin 1; structu 97.7 0.00015 5.2E-09 55.5 7.7 75 201-281 5-85 (104)
386 1wey_A Calcipressin 1; structu 97.3 0.0007 2.4E-08 51.8 7.5 72 106-183 5-82 (104)
387 1whv_A Poly(A)-specific ribonu 97.1 0.0015 5E-08 49.2 6.7 53 107-168 17-69 (100)
388 1uw4_A UPF3X; nonsense mediate 97.0 0.002 6.8E-08 48.5 7.3 63 202-264 2-66 (91)
389 1uw4_A UPF3X; nonsense mediate 96.9 0.003 1E-07 47.5 7.0 65 107-171 2-68 (91)
390 1wwh_A Nucleoporin 35, nucleop 96.9 0.0044 1.5E-07 48.8 8.2 74 198-278 21-95 (119)
391 1whv_A Poly(A)-specific ribonu 96.9 0.0026 8.8E-08 47.9 6.4 57 198-263 13-69 (100)
392 3ctr_A Poly(A)-specific ribonu 96.8 0.0019 6.4E-08 48.8 5.4 52 108-168 8-59 (101)
393 1wwh_A Nucleoporin 35, nucleop 96.6 0.0047 1.6E-07 48.6 6.6 72 104-182 22-94 (119)
394 3ctr_A Poly(A)-specific ribonu 96.3 0.0027 9.1E-08 47.9 3.6 56 200-264 5-60 (101)
395 3p3d_A Nucleoporin 53; structu 96.3 0.0056 1.9E-07 48.9 5.6 79 200-279 6-98 (132)
396 2l08_A Regulator of nonsense t 95.8 0.016 5.5E-07 43.8 5.7 65 200-264 8-74 (97)
397 3pq1_A Poly(A) RNA polymerase; 95.5 0.0052 1.8E-07 60.6 2.7 58 105-168 52-109 (464)
398 2l08_A Regulator of nonsense t 95.5 0.019 6.7E-07 43.3 5.1 67 105-171 8-76 (97)
399 3p3d_A Nucleoporin 53; structu 95.1 0.019 6.5E-07 45.8 4.2 76 106-182 7-96 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.0 0.0092 3.1E-07 58.8 2.6 59 199-263 51-109 (464)
401 3d45_A Poly(A)-specific ribonu 86.2 1.1 3.8E-05 44.8 6.6 55 106-169 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 80.8 3 0.0001 41.7 7.1 56 200-264 439-494 (507)
403 4eyt_A Telomerase associated p 55.5 40 0.0014 24.4 6.4 69 200-276 11-87 (129)
404 4e8u_A Putative uncharacterize 40.6 45 0.0015 27.7 5.4 51 108-161 14-75 (172)
405 4gyx_A Type III collagen fragm 40.3 42 0.0014 18.2 3.3 8 378-385 12-19 (31)
406 3j21_T 50S ribosomal protein L 31.8 85 0.0029 22.7 5.1 57 108-167 24-82 (86)
407 3fry_A Probable copper-exporti 30.8 1.2E+02 0.0041 20.2 5.9 57 201-264 6-62 (73)
408 3lpe_A Putative transcription 30.4 92 0.0031 22.7 5.2 24 146-169 48-71 (92)
409 4e8u_A Putative uncharacterize 27.7 84 0.0029 26.1 5.0 50 202-254 13-73 (172)
410 3ts2_A Protein LIN-28 homolog 27.2 10 0.00035 30.9 -0.6 28 216-251 2-29 (148)
411 2i9x_A Putative septation prot 26.6 81 0.0028 22.9 4.2 26 227-252 5-30 (87)
412 2ia9_A Putative septation prot 23.9 94 0.0032 23.2 4.2 26 227-252 5-30 (100)
413 1vq8_S 50S ribosomal protein L 23.6 1.2E+02 0.0041 21.9 4.6 57 108-167 23-81 (85)
414 2i9z_A Putative septation prot 22.8 1E+02 0.0035 23.2 4.2 26 227-252 5-30 (105)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.8e-36 Score=269.48 Aligned_cols=178 Identities=29% Similarity=0.484 Sum_probs=153.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+||..++..+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 44679999999999999999999999999999999999999999999999999999999999999777799999999998
Q ss_pred ccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHh
Q 013270 183 SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262 (446)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~ 262 (446)
....... ........++|||+|||+.+|+++|+++|+.||.|..|+|++|+.++.++|||||+|.+.++|.+|+..
T Consensus 90 ~~~~~~~----~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 90 VSREDSQ----RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp CC---------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred cCccccc----ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 6443221 112244568999999999999999999999999999999999988999999999999999999999998
Q ss_pred CCCcccCeEEEEEEcccCCCCC
Q 013270 263 PQKMFEGHQLQCQKAAEGKNRT 284 (446)
Q Consensus 263 ~~~~~~Gr~l~v~~a~~~~~~~ 284 (446)
++..|+|+.|.|.|+.++....
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp SCCEETTEECEEEECC------
T ss_pred CCcEECCEEEEEEecCChhHhc
Confidence 6688999999999998877653
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5.6e-36 Score=272.16 Aligned_cols=167 Identities=20% Similarity=0.374 Sum_probs=150.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
..++|||+|||+++|+++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|.+||..++.. +.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999998765 899999998875
Q ss_pred cCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC
Q 013270 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263 (446)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~ 263 (446)
.... .......+|||+|||+.+|+++|+++|+.||.|.+|+|++|. +.++|||||+|.+.++|.+||+.|
T Consensus 94 ~~~~--------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 94 RDPS--------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp CCTH--------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccc--------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHh
Confidence 3221 123456789999999999999999999999999999999984 568999999999999999999999
Q ss_pred C-CcccCeEEEEEEcccCC
Q 013270 264 Q-KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 264 ~-~~~~Gr~l~v~~a~~~~ 281 (446)
| ..|+||.|+|.|+.++.
T Consensus 164 ng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp TTCEETTEECEEEECCCHH
T ss_pred CCCEECCEEEEEEEcCCCc
Confidence 8 78999999999997653
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.7e-35 Score=258.34 Aligned_cols=164 Identities=26% Similarity=0.529 Sum_probs=151.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeeccc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASV 184 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~~ 184 (446)
+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|+.. ...++|+.|.+.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999999998999999999999999999999996 4579999999988642
Q ss_pred CCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q 013270 185 GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
. ......++|||+|||+.+++++|+++|+.||.|.+|+|++|+.++.++|||||+|.+.++|.+|++ ++
T Consensus 81 ~----------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~ 149 (167)
T 2cjk_A 81 R----------DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK 149 (167)
T ss_dssp H----------HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS
T ss_pred h----------hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC
Confidence 1 124456799999999999999999999999999999999998899999999999999999999998 66
Q ss_pred -CcccCeEEEEEEcccC
Q 013270 265 -KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 265 -~~~~Gr~l~v~~a~~~ 280 (446)
..|+|+.|.|.|+.++
T Consensus 150 ~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 150 FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECSSSSCEEEEECCCC
T ss_pred CEEeCCeEEEEeecCCC
Confidence 7899999999999875
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=252.58 Aligned_cols=163 Identities=26% Similarity=0.441 Sum_probs=149.6
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecccC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASVG 185 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~~ 185 (446)
++|||+|||+++|+++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|.+|+..+++. +.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999996 5889999999999999999999777655 99999999998644
Q ss_pred CCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-
Q 013270 186 PTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ- 264 (446)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~- 264 (446)
.. ......++|||+|||+.+|+++|+++|+.||.|.++++++|+.++.++|||||+|.+.++|.+|+..||
T Consensus 80 ~~--------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 80 QQ--------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp CC--------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CC--------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 32 224567899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcccCeEEEEEEcc
Q 013270 265 KMFEGHQLQCQKAA 278 (446)
Q Consensus 265 ~~~~Gr~l~v~~a~ 278 (446)
..|+|+.|+|.||+
T Consensus 152 ~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 152 QDLNGRPLRINWAA 165 (166)
T ss_dssp CEETTEECEEEESC
T ss_pred CccCCcEEEEEecC
Confidence 78999999999985
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.8e-34 Score=252.01 Aligned_cols=163 Identities=29% Similarity=0.463 Sum_probs=150.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
..++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.+++. +.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999999989999999999999999999999977654 999999999986
Q ss_pred cCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC
Q 013270 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263 (446)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~ 263 (446)
.... ....++|||+|||..+++++|+++|++||.|..++++++..++.++|||||+|.+.++|.+|+..|
T Consensus 82 ~~~~----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 82 PGGE----------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp CCSS----------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcc----------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 4322 345689999999999999999999999999999999999889999999999999999999999999
Q ss_pred C-CcccC--eEEEEEEc
Q 013270 264 Q-KMFEG--HQLQCQKA 277 (446)
Q Consensus 264 ~-~~~~G--r~l~v~~a 277 (446)
| ..|.| ++|+|.||
T Consensus 152 ~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCEecCCCeEEEEEeC
Confidence 8 77877 99999986
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.4e-34 Score=249.73 Aligned_cols=162 Identities=30% Similarity=0.473 Sum_probs=149.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeeccc
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASV 184 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~ 184 (446)
.++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.+++. +.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 689999999999999999999999999999999999989999999999999999999999977654 9999999998763
Q ss_pred CCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q 013270 185 GPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
.. .....++|||+|||+.+++++|+++|+.||.|.+++++++..+|.++|||||+|.+.++|.+|++.||
T Consensus 82 ~~----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 82 SS----------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp CC----------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred Cc----------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 32 24456899999999999999999999999999999999998899999999999999999999999998
Q ss_pred -CcccCeE--EEEEEc
Q 013270 265 -KMFEGHQ--LQCQKA 277 (446)
Q Consensus 265 -~~~~Gr~--l~v~~a 277 (446)
..|.|+. |.|.||
T Consensus 152 g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 152 GQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCccCCCccceEEEeC
Confidence 7799965 888886
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=9.9e-35 Score=264.36 Aligned_cols=179 Identities=24% Similarity=0.397 Sum_probs=153.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~~ 183 (446)
..++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++ .+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 368999999999999999999999999999999999988999999999999999999999997764 4999999998765
Q ss_pred cCCCCCCC-ccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHh
Q 013270 184 VGPTGPGV-KEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEE 262 (446)
Q Consensus 184 ~~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~ 262 (446)
........ ..........++|||+|||+.+|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 33211000 00011235668999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CcccCeEEEEEEcccCCCC
Q 013270 263 PQ-KMFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 263 ~~-~~~~Gr~l~v~~a~~~~~~ 283 (446)
|| ..|+|+.|+|.|+.++...
T Consensus 187 l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCSST
T ss_pred ccCCEeCCcEEEEEEecCCCCC
Confidence 98 7899999999999877543
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.4e-33 Score=245.45 Aligned_cols=164 Identities=24% Similarity=0.327 Sum_probs=144.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCC--CccceEEEEEccHHHHHHHHHcCCCc-cc---Cccce
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTG--KAKGFAFIVFKTRKAAVKALKNPQRK-VN---NRMAS 178 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g--~~~G~afV~f~~~~~A~~Al~~~~~~-~~---g~~i~ 178 (446)
+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.++ +++|||||+|.+.++|.+|++.+++. +. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 47899999999999999999999999999999999998776 89999999999999999999988654 44 56666
Q ss_pred eeecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHH
Q 013270 179 CQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARK 258 (446)
Q Consensus 179 v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~ 258 (446)
+.++..... .....++|||+|||+.+|+++|+++|++||.|.+|+|+++. +|.++|||||+|.+.++|.+
T Consensus 82 ~~~~~~~~~---------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~ 151 (175)
T 3nmr_A 82 MKPADSEKN---------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQT 151 (175)
T ss_dssp EEECGGGCC---------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHH
T ss_pred Ecccccccc---------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHH
Confidence 666543222 24467899999999999999999999999999999999995 69999999999999999999
Q ss_pred HHHhCC-Cccc---CeEEEEEEcc
Q 013270 259 ALEEPQ-KMFE---GHQLQCQKAA 278 (446)
Q Consensus 259 Ai~~~~-~~~~---Gr~l~v~~a~ 278 (446)
|+..|| ..+. |++|+|.||.
T Consensus 152 A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 152 AIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHhcCCcccCCCCCCeEEEecC
Confidence 999998 4444 4999999984
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=3.5e-33 Score=250.55 Aligned_cols=171 Identities=17% Similarity=0.347 Sum_probs=145.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCC-----------CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-Ccc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSG-----------EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKV 172 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G-----------~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~ 172 (446)
..++|||+|||+++|+++|+++|+.|| .|.++.+ ++++|||||+|.+.++|.+|| .++ ..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 479999999999999999999999995 4444443 567899999999999999999 555 559
Q ss_pred cCccceeeecccCCCCCCCc----------cCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCc
Q 013270 173 NNRMASCQLASVGPTGPGVK----------EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKS 242 (446)
Q Consensus 173 ~g~~i~v~~~~~~~~~~~~~----------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~ 242 (446)
.|+.|.|.++.......... .........++|||+|||+.+++++|+++|+.||.|..|+|++++.++.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 99999999876543222111 11112356799999999999999999999999999999999999889999
Q ss_pred eeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCCC
Q 013270 243 RGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGKN 282 (446)
Q Consensus 243 kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~ 282 (446)
+|||||+|.+.++|.+|+..|| ..|+|+.|.|.|+.++..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999988 789999999999988754
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=4.8e-32 Score=237.51 Aligned_cols=158 Identities=18% Similarity=0.373 Sum_probs=140.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccC----C-------CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCccc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGS----G-------EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVN 173 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~ 173 (446)
+.++|||+|||+++|+++|+++|+.| | .|.++++. +++|||||+|.+.++|.+|+...+..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 47999999999999999999999999 6 66666653 4589999999999999999943345599
Q ss_pred CccceeeecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCH
Q 013270 174 NRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTV 253 (446)
Q Consensus 174 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~ 253 (446)
|+.|.|.++..... ....++|||+|||+.+|+++|+++|++||.|..|++++++.++.++|||||+|.+.
T Consensus 77 g~~i~v~~~~~~~~----------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP----------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp TEECEEECCSSCCC----------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred CceeeecCCcccCC----------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 99999998653322 33478999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHhCC-CcccCeEEEEEEcc
Q 013270 254 EGARKALEEPQ-KMFEGHQLQCQKAA 278 (446)
Q Consensus 254 ~~A~~Ai~~~~-~~~~Gr~l~v~~a~ 278 (446)
++|.+|+..|| ..|+|+.|.|.||.
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999998 78999999999973
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=1.4e-32 Score=241.80 Aligned_cols=165 Identities=22% Similarity=0.284 Sum_probs=143.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~ 181 (446)
.....++|||+|||+++|+++|+++|+.||.|.. .++++..+++++|||||+|.+.++|.+|++..+..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 4556899999999999999999999999998877 344555688999999999999999999996334559999999999
Q ss_pred cccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013270 182 ASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261 (446)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~ 261 (446)
+..... ......++|||+|||+.+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+.
T Consensus 88 ~~~~~~--------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 88 PKGRDS--------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp CCCSSC--------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred CCCccc--------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 864332 124567899999999999999999999999988765 4689999999999999999999999
Q ss_pred hCC-CcccCeEEEEEEcccC
Q 013270 262 EPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 262 ~~~-~~~~Gr~l~v~~a~~~ 280 (446)
.|| ..|+|+.|+|.|+.++
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHTEEEETTEEEEEEECSSC
T ss_pred HhCCCEECCeEEEEEecCCC
Confidence 998 7899999999999875
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.2e-31 Score=252.83 Aligned_cols=172 Identities=22% Similarity=0.308 Sum_probs=156.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446789999999999999999999999999999999999999999999999999999999999877655 9999999999
Q ss_pred cccCCCCCCCccCcccccCcceeecCCCCCcc-cHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHH
Q 013270 182 ASVGPTGPGVKEQGAAAQGERKIYVSNVPRDV-EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKAL 260 (446)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai 260 (446)
+...... ......++|||+|||+.+ |+++|+++|+.||.|.+|+|++|. +|.++|||||+|.+.++|.+|+
T Consensus 172 a~~~~~~-------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~ 243 (284)
T 3smz_A 172 TDAGQLT-------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQ 243 (284)
T ss_dssp CCGGGCC-------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHH
T ss_pred CCCCCCC-------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHH
Confidence 8644322 224567899999999995 999999999999999999999985 8999999999999999999999
Q ss_pred HhCC-CcccCeEEEEEEcccCCC
Q 013270 261 EEPQ-KMFEGHQLQCQKAAEGKN 282 (446)
Q Consensus 261 ~~~~-~~~~Gr~l~v~~a~~~~~ 282 (446)
..|| ..|+|+.|+|.|+.++..
T Consensus 244 ~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 244 QQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHTTCEETTEECEEEECCSSSC
T ss_pred HHhCCCccCCeEEEEEEecCCCc
Confidence 9998 789999999999987664
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.8e-31 Score=240.10 Aligned_cols=166 Identities=12% Similarity=0.149 Sum_probs=139.3
Q ss_pred CCCeEEEeCCC-CCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 105 SQRKIFVHGLG-WDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 105 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
..++|||+||| +++|+++|+++|+.||.|.+|+|+++ .+|||||+|.+.++|++||+.+++. +.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 47899999999 89999999999999999999999865 3799999999999999999988765 99999999988
Q ss_pred ccCCCCCCCc-------------------c-C-------cccccCcceeecCCCCCcccHHHHHHHhcccCCe--eEEEE
Q 013270 183 SVGPTGPGVK-------------------E-Q-------GAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI--ETGPI 233 (446)
Q Consensus 183 ~~~~~~~~~~-------------------~-~-------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V--~~v~i 233 (446)
......+... . . .....+.++|||+|||+++|+++|+++|++||.| .+|++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 6433211100 0 0 0012346789999999999999999999999999 89999
Q ss_pred eecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCe----EEEEEEc
Q 013270 234 GFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGH----QLQCQKA 277 (446)
Q Consensus 234 ~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr----~l~v~~a 277 (446)
+.+. +.++|||||+|.+.++|.+||..|| ..|.|+ ++.|+++
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8874 6667999999999999999999999 678775 6888775
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1e-30 Score=247.93 Aligned_cols=168 Identities=17% Similarity=0.208 Sum_probs=143.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHH----HhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccc
Q 013270 103 DVSQRKIFVHGLGWDTTQESLL----SAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMA 177 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i 177 (446)
....++|||+|||+++|+++|+ ++|+.||.|.+|+|++ +++++|||||+|.+.++|.+||+.+++. |.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999977 8999999999999875 6889999999999999999999888765 999999
Q ss_pred eeeecccCCCCCCCc-----------------------------------------------------------------
Q 013270 178 SCQLASVGPTGPGVK----------------------------------------------------------------- 192 (446)
Q Consensus 178 ~v~~~~~~~~~~~~~----------------------------------------------------------------- 192 (446)
.|.++..........
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 999886443200000
Q ss_pred ------------------------------------cCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeec
Q 013270 193 ------------------------------------EQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFD 236 (446)
Q Consensus 193 ------------------------------------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d 236 (446)
.........++|||+|||+.+|+++|+++|+.||.|.+|+|+.+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 00012335688999999999999999999999999999999876
Q ss_pred CCCCCceeEEEEEeCCHHHHHHHHHhCC-Cccc-CeEEEEEEcc
Q 013270 237 ITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFE-GHQLQCQKAA 278 (446)
Q Consensus 237 ~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~-Gr~l~v~~a~ 278 (446)
+ +|||||+|.+.++|.+|+..|| ..|. |+.|+|.|++
T Consensus 243 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 R-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 4 6899999999999999999999 6788 9999999985
No 15
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.7e-30 Score=243.33 Aligned_cols=160 Identities=23% Similarity=0.298 Sum_probs=143.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|.+ ++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 44578999999999999999999999999999999954 4689999999999999999977654 9999999998
Q ss_pred cccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013270 182 ASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALE 261 (446)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~ 261 (446)
+. ..++|||+|||+.+|+++|+++|+.||.|.+|+|++| .+|+++|||||+|.+.++|.+|+.
T Consensus 93 a~----------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 93 AT----------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp CC----------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHH
T ss_pred cc----------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHH
Confidence 64 3578999999999999999999999999999999999 699999999999999999999999
Q ss_pred hCC-Cc-cc---CeEEEEEEcccCCCCCC
Q 013270 262 EPQ-KM-FE---GHQLQCQKAAEGKNRTS 285 (446)
Q Consensus 262 ~~~-~~-~~---Gr~l~v~~a~~~~~~~~ 285 (446)
.+| .. +. +|+|.|.++........
T Consensus 156 ~l~~~~~~~~~~~r~i~v~~~~~~~~~~~ 184 (261)
T 3sde_A 156 RCGDGAFLLTTTPRPVIVEPMEQFDDEDG 184 (261)
T ss_dssp HHHHSCEESSSSCCBCEEEECCCEESSSC
T ss_pred HhcCCeEEecCCCceEEEeeccccCccCC
Confidence 995 43 43 99999999987654433
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=7e-31 Score=250.30 Aligned_cols=171 Identities=16% Similarity=0.233 Sum_probs=143.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeec
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLA 182 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~ 182 (446)
..++|||+|||+++|+++|+++|+.|| .|.+|+|++++. ++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 579999999999999999999999999 999999999874 88999999999999999999997765 499999999998
Q ss_pred ccCCCCCCCccCcccccCcceeecCCCCCc-ccHHHHHHHhcccCCeeEEEEeecCC-CCCceeEEEEEeCCHHHHHHHH
Q 013270 183 SVGPTGPGVKEQGAAAQGERKIYVSNVPRD-VEKEKLRGFFERFGEIETGPIGFDIT-TGKSRGFAIFVYKTVEGARKAL 260 (446)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~V~~v~i~~d~~-~g~~kG~afV~F~~~~~A~~Ai 260 (446)
......... .......++|||+|||+. +|+++|+++|+.||.|..|+|+++.. |+.++|||||+|.+.++|.+|+
T Consensus 195 ~~~~~~~~~---~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 195 NPLEKSKRT---DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp CCC------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred CCCcccccc---cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 644322111 123556789999999999 99999999999999999999999876 5999999999999999999999
Q ss_pred HhCC-CcccCeEEEEEEcccC
Q 013270 261 EEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 261 ~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
.|| ..|+|+.|.|.|+.++
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 888 7799999999999875
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=3.7e-30 Score=236.40 Aligned_cols=169 Identities=20% Similarity=0.233 Sum_probs=142.8
Q ss_pred CCCCCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCcccee
Q 013270 102 RDVSQRKIFVHGLGW-DTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASC 179 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v 179 (446)
.....++|||+|||+ ++|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+|++.+++ .+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345689999999999 99999999999999999999998874 78999999999999999997764 599999999
Q ss_pred eecccCCCCCCCcc-------------------------CcccccCcceeecCCCCCcccHHHHHHHhcccC-CeeEEEE
Q 013270 180 QLASVGPTGPGVKE-------------------------QGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG-EIETGPI 233 (446)
Q Consensus 180 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i 233 (446)
.++........... ......+.++|||+|||+.+++++|+++|+.|| .|.+|+|
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 98864421111000 001123468999999999999999999999999 9999999
Q ss_pred eecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Cccc-CeEEEEEEcccC
Q 013270 234 GFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFE-GHQLQCQKAAEG 280 (446)
Q Consensus 234 ~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~-Gr~l~v~~a~~~ 280 (446)
+.+ .+|||||+|.+.++|.+|+..|+ ..|+ |+.|+|.|++++
T Consensus 185 ~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 185 FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 653 27899999999999999999998 7788 999999999764
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=6.5e-30 Score=242.61 Aligned_cols=155 Identities=23% Similarity=0.370 Sum_probs=143.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
..++|||+|||+++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|+..+++. +.|+.|.|.+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~- 92 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ- 92 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec-
Confidence 579999999999999999999999999 999988 467899999999999999999987654 99999999984
Q ss_pred cCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC
Q 013270 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263 (446)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~ 263 (446)
...++|||+|||+.+|+++|+++|+.||.|..++|++|+.+|.++|||||+|.+.++|.+|+..+
T Consensus 93 ---------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 157 (284)
T 3smz_A 93 ---------------PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 157 (284)
T ss_dssp ---------------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ---------------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 24579999999999999999999999999999999999999999999999999999999999988
Q ss_pred C-CcccCeEEEEEEcccCCC
Q 013270 264 Q-KMFEGHQLQCQKAAEGKN 282 (446)
Q Consensus 264 ~-~~~~Gr~l~v~~a~~~~~ 282 (446)
+ ..|+|+.|.|.|+.++..
T Consensus 158 ~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 158 LGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp TTCEETTEECEEEECCGGGC
T ss_pred CCCEeCCcEEEEEECCCCCC
Confidence 8 789999999999987654
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=2.4e-30 Score=232.25 Aligned_cols=166 Identities=20% Similarity=0.229 Sum_probs=141.1
Q ss_pred CCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeec
Q 013270 105 SQRKIFVHGLGW-DTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLA 182 (446)
Q Consensus 105 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~ 182 (446)
.+++|||+|||+ ++|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+|+..+++ .+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998764 78999999999999999997765 599999999988
Q ss_pred ccCCCCCCCcc-------------------------CcccccCcceeecCCCCCcccHHHHHHHhcccC-CeeEEEEeec
Q 013270 183 SVGPTGPGVKE-------------------------QGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG-EIETGPIGFD 236 (446)
Q Consensus 183 ~~~~~~~~~~~-------------------------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d 236 (446)
........... ......+.++|||+|||+.+++++|+++|+.|| .|.+|+|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 64422111000 001123478999999999999999999999999 9999999764
Q ss_pred CCCCCceeEEEEEeCCHHHHHHHHHhCC-Cccc-CeEEEEEEcccC
Q 013270 237 ITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFE-GHQLQCQKAAEG 280 (446)
Q Consensus 237 ~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~-Gr~l~v~~a~~~ 280 (446)
. +|||||+|.+.++|.+|+..|| ..|+ |+.|+|.|++++
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2 7999999999999999999998 7788 999999999764
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=4.9e-30 Score=244.46 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=137.1
Q ss_pred cCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceee
Q 013270 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQ 180 (446)
Q Consensus 101 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~ 180 (446)
..+...++|||+|||+++|+++|+++|+.||.|.+|+|++++. + ++|||||+|.+.++|.+||+..+..+.|+.|.|.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEE
Confidence 3456789999999999999999999999999999999999863 3 5899999999999999999744455999999998
Q ss_pred ecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHH
Q 013270 181 LASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFG-EIETGPIGFDITTGKSRGFAIFVYKTVEGARKA 259 (446)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A 259 (446)
++ ..++|||+|||+.+++++|+++|+.|| .|..|+|++++. +.++|||||+|.+.++|.+|
T Consensus 114 ~~-----------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 114 HL-----------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp EC-----------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHH
T ss_pred EC-----------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHH
Confidence 75 368999999999999999999999999 999999999864 88999999999999999999
Q ss_pred HHhCC-CcccCeEEEEEEcccCCCC
Q 013270 260 LEEPQ-KMFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 260 i~~~~-~~~~Gr~l~v~~a~~~~~~ 283 (446)
+..|+ ..|.|+.|.|.|+.+....
T Consensus 176 ~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 176 VEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHTTCEETTEECEEEECCCC---
T ss_pred HHHhCCCEeCCcEEEEEECCCCccc
Confidence 99888 7899999999999876543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=4.9e-24 Score=183.94 Aligned_cols=144 Identities=22% Similarity=0.311 Sum_probs=114.8
Q ss_pred EEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc--cc------CccceeeecccCCCCCCCccCcccccCcceeec
Q 013270 135 ECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK--VN------NRMASCQLASVGPTGPGVKEQGAAAQGERKIYV 206 (446)
Q Consensus 135 ~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~--~~------g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~V 206 (446)
.+.|+++. .+++|||||+|.+.++|++|+..++.. +. +............ ...........++|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSH----HHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCC----CSSCCCCCCBCCEEEE
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccccc----ccccccCCCCCCEEEE
Confidence 57788886 379999999999999999999876422 22 2222222221111 1111222456789999
Q ss_pred CCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCCCCC
Q 013270 207 SNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGKNRT 284 (446)
Q Consensus 207 ~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~~~ 284 (446)
+|||+.+|+++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+||..|| ..|+|+.|+|.|+.++..+.
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 9999999999999999999999999999999899999999999999999999999998 67999999999998876543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=3.5e-22 Score=162.50 Aligned_cols=109 Identities=24% Similarity=0.398 Sum_probs=72.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
..++|||+|||+++|+++|+++|+.||.|.+|+|++|+ +.++|||||+|.+.++|++||+.+++. |.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999996 458999999999999999999987655 999999999986
Q ss_pred cCCCCCCCccCcccccCcceeecCCCCCcccHHH
Q 013270 184 VGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEK 217 (446)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~ 217 (446)
........ ........++|||+|||+++|++.
T Consensus 82 ~~~~~~~~--~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAE--LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC------------------------------
T ss_pred Cccccccc--cccccCCCCceEeCCCCCCccccc
Confidence 54332211 122234556899999999999863
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=2.1e-21 Score=165.81 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=110.1
Q ss_pred CCCccceEEEEEccHHHHHHHHHcC-CCc-ccCccceeeecccCCC------CCCCccCcccccCcceeecCCCCCcccH
Q 013270 144 TGKAKGFAFIVFKTRKAAVKALKNP-QRK-VNNRMASCQLASVGPT------GPGVKEQGAAAQGERKIYVSNVPRDVEK 215 (446)
Q Consensus 144 ~g~~~G~afV~f~~~~~A~~Al~~~-~~~-~~g~~i~v~~~~~~~~------~~~~~~~~~~~~~~~~l~V~nLp~~~te 215 (446)
....+|+++|+|.+.++|++|++.+ ++. +.| .+.+.++..... ..............++|||+|||+.+|+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3567899999999999999999988 655 888 888887653211 0111122333566799999999999999
Q ss_pred HHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCC
Q 013270 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGK 281 (446)
Q Consensus 216 ~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~ 281 (446)
++|+++|++||.|.+|+|++| ++|||||+|.+.++|.+|+..|| ..|+|++|+|.|+.++.
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999877 58999999999999999999988 77999999999998764
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=4.9e-21 Score=151.07 Aligned_cols=81 Identities=21% Similarity=0.411 Sum_probs=77.2
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
...++|||+|||+++|+++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|.+|++.|| ..|+||.|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346789999999999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred cc
Q 013270 278 AE 279 (446)
Q Consensus 278 ~~ 279 (446)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=8.2e-21 Score=147.45 Aligned_cols=83 Identities=17% Similarity=0.331 Sum_probs=77.0
Q ss_pred cceeecCCCCCcccHHHHHHHhcccC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC--CcccCeEEEEEEc
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERFG-EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ--KMFEGHQLQCQKA 277 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~--~~~~Gr~l~v~~a 277 (446)
+++|||+|||+++|+++|+++|++|| .|.+|+|++|+.++.++|||||+|.+.++|.+|++.++ ..|+||+|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999875 4699999999999
Q ss_pred ccCCCC
Q 013270 278 AEGKNR 283 (446)
Q Consensus 278 ~~~~~~ 283 (446)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 26
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=2.2e-20 Score=156.12 Aligned_cols=124 Identities=20% Similarity=0.251 Sum_probs=83.0
Q ss_pred eEEEEEccHHHHHHHHHcCCCc-ccCccceeeecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCe
Q 013270 150 FAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEI 228 (446)
Q Consensus 150 ~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V 228 (446)
++|++|.+...+..|+..+++. ..|+. ...+. .........++|||+|||+.+|+++|+++|+.||.|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~----------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i 74 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYG----------RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRV 74 (135)
T ss_dssp ------------------------------CCSC----------CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcC----------CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 5778888888888888887543 33332 11111 112235567899999999999999999999999999
Q ss_pred eEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCCCCC
Q 013270 229 ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGKNRT 284 (446)
Q Consensus 229 ~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~~~ 284 (446)
..|+|++|+.+++++|||||+|.+.++|.+||..|| ..|+|+.|+|.|+.++..+.
T Consensus 75 ~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 75 GDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp SEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 999999998899999999999999999999999998 77999999999998776543
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=5.6e-20 Score=145.01 Aligned_cols=81 Identities=28% Similarity=0.428 Sum_probs=75.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|.+|++.+++. |.|+.|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999987655 9999999999
Q ss_pred cc
Q 013270 182 AS 183 (446)
Q Consensus 182 ~~ 183 (446)
+.
T Consensus 96 Ak 97 (99)
T 4fxv_A 96 AR 97 (99)
T ss_dssp CC
T ss_pred ee
Confidence 74
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=9.8e-20 Score=146.42 Aligned_cols=83 Identities=18% Similarity=0.342 Sum_probs=78.3
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
.+.++|||+|||+.+++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+||+.|| ..|+||.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred ccCC
Q 013270 278 AEGK 281 (446)
Q Consensus 278 ~~~~ 281 (446)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6543
No 29
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=145.04 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=75.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCC--eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCC-----cccCe
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGE--IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQK-----MFEGH 270 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~-----~~~Gr 270 (446)
...-.+|||+|||+.+|+++|+++|++||. |.+|+|++|+.+|++||||||+|.+.++|.+|++.||. .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445679999999999999999999999995 67899999999999999999999999999999999873 48999
Q ss_pred EEEEEEccc
Q 013270 271 QLQCQKAAE 279 (446)
Q Consensus 271 ~l~v~~a~~ 279 (446)
+|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999964
No 30
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=140.04 Aligned_cols=88 Identities=19% Similarity=0.488 Sum_probs=81.3
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++|+.+++++|||||+|.+.++|.+|+. ++ ..|+|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 5567899999999999999999999999999999999999999999999999999999999999 67 789999999999
Q ss_pred cccCCCCCCC
Q 013270 277 AAEGKNRTSS 286 (446)
Q Consensus 277 a~~~~~~~~~ 286 (446)
+.++..+...
T Consensus 86 a~~~~~~~~~ 95 (99)
T 2dgs_A 86 AEPRDSKSSG 95 (99)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCcccCCC
Confidence 9987765433
No 31
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=5.2e-19 Score=143.75 Aligned_cols=89 Identities=17% Similarity=0.300 Sum_probs=82.5
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+||+.|| ..|+|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999999899999999999999999999999998 789999999999
Q ss_pred cccCCCCCCC
Q 013270 277 AAEGKNRTSS 286 (446)
Q Consensus 277 a~~~~~~~~~ 286 (446)
+.++..+...
T Consensus 102 a~~~~~~~~~ 111 (115)
T 2cpz_A 102 KRSKNDSKSG 111 (115)
T ss_dssp CCCSCCCCCC
T ss_pred cCCCCcCCCC
Confidence 9887765443
No 32
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=139.96 Aligned_cols=87 Identities=25% Similarity=0.421 Sum_probs=81.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++|+.+++++|||||+|.+.++|.+|+..|| ..|+|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999999998 779999999999
Q ss_pred cccCCCCC
Q 013270 277 AAEGKNRT 284 (446)
Q Consensus 277 a~~~~~~~ 284 (446)
+.++..+.
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 98877643
No 33
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=138.56 Aligned_cols=86 Identities=28% Similarity=0.514 Sum_probs=80.6
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
...++|||+|||+.+++++|+++|++||.|..|+|++|+.+++++|||||+|.+.++|.+|+..|| ..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 457899999999999999999999999999999999999999999999999999999999999988 7899999999999
Q ss_pred ccCCCCC
Q 013270 278 AEGKNRT 284 (446)
Q Consensus 278 ~~~~~~~ 284 (446)
.++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8876543
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-19 Score=139.34 Aligned_cols=88 Identities=22% Similarity=0.387 Sum_probs=81.6
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEE-EEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETG-PIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v-~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
...++|||+|||+.+++++|+++|+.||.|..| +|++|+.++.++|||||+|.+.++|.+|+..|| ..|+|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 999999999999999999999999999999998 779999999999
Q ss_pred cccCCCCCCC
Q 013270 277 AAEGKNRTSS 286 (446)
Q Consensus 277 a~~~~~~~~~ 286 (446)
+.++..+...
T Consensus 83 a~~~~~~~~~ 92 (96)
T 1x5t_A 83 AFKKDSKGSG 92 (96)
T ss_dssp SCCCCCCCCC
T ss_pred ecccCCCCCC
Confidence 9887765433
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=142.96 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=75.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...++|||+|||+++|+++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|.+||+.+++. |.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999988765 99999999987
Q ss_pred c
Q 013270 183 S 183 (446)
Q Consensus 183 ~ 183 (446)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 5
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=5.7e-19 Score=134.61 Aligned_cols=80 Identities=26% Similarity=0.498 Sum_probs=76.7
Q ss_pred ceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccC
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
.+|||+|||+.+++++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|+..+| ..|+|+.|+|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 689999999999999999999999999999999999999999999999999999999999988 7899999999999876
Q ss_pred C
Q 013270 281 K 281 (446)
Q Consensus 281 ~ 281 (446)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.5e-19 Score=139.52 Aligned_cols=87 Identities=28% Similarity=0.395 Sum_probs=81.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..|| ..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 5678999999999999999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred cccCCCCC
Q 013270 277 AAEGKNRT 284 (446)
Q Consensus 277 a~~~~~~~ 284 (446)
+.++..+.
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 98876554
No 38
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.1e-18 Score=141.80 Aligned_cols=90 Identities=20% Similarity=0.393 Sum_probs=83.3
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
.....++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||+.|+ ..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678999999999999999999999999999999999998899999999999999999999999998 78999999999
Q ss_pred EcccCCCCCCC
Q 013270 276 KAAEGKNRTSS 286 (446)
Q Consensus 276 ~a~~~~~~~~~ 286 (446)
|+.++..+...
T Consensus 91 ~a~~~~~~~~~ 101 (115)
T 2dgo_A 91 WATRKPPAPKS 101 (115)
T ss_dssp ESSCCCCCSCC
T ss_pred EccCCCCCCcc
Confidence 99987765443
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.4e-19 Score=140.37 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=82.7
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
.....++|||+|||+.+++++|+++|++||.|..|+|++|+.++.++|||||+|.+.++|.+|+..|+ ..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35677999999999999999999999999999999999998899999999999999999999999998 78999999999
Q ss_pred EcccCCCCCC
Q 013270 276 KAAEGKNRTS 285 (446)
Q Consensus 276 ~a~~~~~~~~ 285 (446)
++.++..+..
T Consensus 91 ~a~~~~~~~~ 100 (105)
T 1x5u_A 91 KASAHNKNLS 100 (105)
T ss_dssp ETTTTSCCCC
T ss_pred ECCCCCcCCC
Confidence 9988766543
No 40
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-19 Score=141.07 Aligned_cols=89 Identities=27% Similarity=0.424 Sum_probs=82.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.|| ..|+|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4567999999999999999999999999999999999999999999999999999999999999988 779999999999
Q ss_pred cccCCCCCCC
Q 013270 277 AAEGKNRTSS 286 (446)
Q Consensus 277 a~~~~~~~~~ 286 (446)
+.++..+...
T Consensus 89 a~~~~~~~~~ 98 (102)
T 2cqb_A 89 AKPMRIKESG 98 (102)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCC
Confidence 9988765544
No 41
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=140.56 Aligned_cols=80 Identities=18% Similarity=0.354 Sum_probs=74.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcC-CC-cccCccceeeec
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP-QR-KVNNRMASCQLA 182 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~-~~-~~~g~~i~v~~~ 182 (446)
+++|||+|||+++|+++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|.+||+.+ +. .+.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 8999999999999999999999999999999999987 44 489999999998
Q ss_pred ccC
Q 013270 183 SVG 185 (446)
Q Consensus 183 ~~~ 185 (446)
...
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 643
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=6.2e-19 Score=135.66 Aligned_cols=82 Identities=20% Similarity=0.393 Sum_probs=75.7
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
...++|||+|||+.+++++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|.+|+..+| ..++|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 457899999999999999999999999999999999998899999999999999999999999988 7899999999999
Q ss_pred ccC
Q 013270 278 AEG 280 (446)
Q Consensus 278 ~~~ 280 (446)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-19 Score=138.73 Aligned_cols=87 Identities=28% Similarity=0.465 Sum_probs=79.9
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCC---CCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEE
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDIT---TGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQC 274 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~---~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v 274 (446)
.+.++|||+|||+.+++++|+++|+.||.|..|+|++++. ++.++|||||+|.+.++|.+|+..|| ..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999999876 66999999999999999999999998 7899999999
Q ss_pred EEcccCCCCCC
Q 013270 275 QKAAEGKNRTS 285 (446)
Q Consensus 275 ~~a~~~~~~~~ 285 (446)
.++.++.....
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99988765543
No 44
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=140.81 Aligned_cols=88 Identities=25% Similarity=0.368 Sum_probs=81.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++|+.++.++|||||+|.+.++|.+|+..|| ..|+|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 5667999999999999999999999999999999999999999999999999999999999999988 789999999999
Q ss_pred cccCCCCCC
Q 013270 277 AAEGKNRTS 285 (446)
Q Consensus 277 a~~~~~~~~ 285 (446)
+........
T Consensus 90 a~~~~~~~~ 98 (103)
T 2dnm_A 90 ARYGRRDLS 98 (103)
T ss_dssp CSSCCSCCC
T ss_pred CCcCCCCCC
Confidence 987765443
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=138.41 Aligned_cols=88 Identities=26% Similarity=0.466 Sum_probs=81.4
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
.....++|||+|||+.+|+++|+++|+.||.|..|+|+++ ++.++|||||+|.+.++|.+|+..|| ..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3567899999999999999999999999999999999998 89999999999999999999999988 78999999999
Q ss_pred EcccCCCCCCC
Q 013270 276 KAAEGKNRTSS 286 (446)
Q Consensus 276 ~a~~~~~~~~~ 286 (446)
|+.++..+...
T Consensus 89 ~a~~~~~~~~~ 99 (103)
T 2d9p_A 89 LAQRKEERQSG 99 (103)
T ss_dssp ECSSCCCCCCC
T ss_pred EecccccCCCC
Confidence 99988766544
No 46
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=137.14 Aligned_cols=84 Identities=18% Similarity=0.326 Sum_probs=79.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++++ +++++|||||+|.+.++|.+|+..|| ..|+|+.|+|.|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 5667899999999999999999999999999999999997 99999999999999999999999998 779999999999
Q ss_pred cccCCC
Q 013270 277 AAEGKN 282 (446)
Q Consensus 277 a~~~~~ 282 (446)
+.++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987764
No 47
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.1e-19 Score=140.08 Aligned_cols=88 Identities=25% Similarity=0.490 Sum_probs=82.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|++.|| ..|+|+.|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 5567899999999999999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred cccCCCCCC
Q 013270 277 AAEGKNRTS 285 (446)
Q Consensus 277 a~~~~~~~~ 285 (446)
+.++.....
T Consensus 89 a~~~~~~~~ 97 (102)
T 1x5s_A 89 AGKSSDNRS 97 (102)
T ss_dssp EECCCCCCC
T ss_pred CCCCCCCCC
Confidence 988776543
No 48
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=140.69 Aligned_cols=100 Identities=18% Similarity=0.275 Sum_probs=84.8
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCccceeeecccC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASCQLASVG 185 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v~~~~~~ 185 (446)
++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|+..++ ..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 78999999999999999999876 4599999999999876
Q ss_pred CCCCCCccCcccccCcceeecCCCCC
Q 013270 186 PTGPGVKEQGAAAQGERKIYVSNVPR 211 (446)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~V~nLp~ 211 (446)
.................+|||+||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCCC
Confidence 64433333333345578999999973
No 49
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=6.3e-19 Score=152.82 Aligned_cols=133 Identities=16% Similarity=0.220 Sum_probs=80.0
Q ss_pred EEEccHHHHHHHHHcCCCc---ccCccceeeecccCCCCC----------CCccCcccccCcceeecCCCCCcccHHHHH
Q 013270 153 IVFKTRKAAVKALKNPQRK---VNNRMASCQLASVGPTGP----------GVKEQGAAAQGERKIYVSNVPRDVEKEKLR 219 (446)
Q Consensus 153 V~f~~~~~A~~Al~~~~~~---~~g~~i~v~~~~~~~~~~----------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~ 219 (446)
.+|.+.++|+.|+..++.. -.|+.+...+........ ............++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7889999999999887643 335555555432111000 011122234567899999999999999999
Q ss_pred HHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCCCCCC
Q 013270 220 GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGKNRTS 285 (446)
Q Consensus 220 ~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~~~~ 285 (446)
++|+.||.|..|.|++++.++.++|||||+|.+.++|.+||..|| ..|+|+.|.|.|+.++..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC----
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 999999999999999999999999999999999999999999998 779999999999988765443
No 50
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.8e-19 Score=139.67 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=71.5
Q ss_pred ceeecCCCCCcccHHHHHHHhcccC--CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcc
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFG--EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAA 278 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G--~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~ 278 (446)
.+|||+|||+++|+++|+++|+.|| .|.+|+|++|+.+|+++|||||+|.+.++|.+|++.|| ..|+||.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999998 78999999999998
Q ss_pred cCCC
Q 013270 279 EGKN 282 (446)
Q Consensus 279 ~~~~ 282 (446)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 51
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=9.5e-19 Score=134.67 Aligned_cols=80 Identities=29% Similarity=0.613 Sum_probs=75.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEc
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a 277 (446)
....++|||+|||+.+++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.++..|+|+.|.|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 56778999999999999999999999999999999999999999999999999999999999988777899999999986
No 52
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=9e-19 Score=134.79 Aligned_cols=81 Identities=32% Similarity=0.653 Sum_probs=76.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~ 181 (446)
.+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.++..++|+.|.|.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999888889999999987
Q ss_pred c
Q 013270 182 A 182 (446)
Q Consensus 182 ~ 182 (446)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=2e-19 Score=140.26 Aligned_cols=81 Identities=21% Similarity=0.364 Sum_probs=74.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCC--CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-----cccCc
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSG--EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-----KVNNR 175 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-----~~~g~ 175 (446)
...-.+|||+|||+++|+++|+++|++|| .|.+|+|++|+.+|++||||||+|.+.++|.+||+.+++ .++||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 34568999999999999999999999999 477999999999999999999999999999999998865 38999
Q ss_pred cceeeecc
Q 013270 176 MASCQLAS 183 (446)
Q Consensus 176 ~i~v~~~~ 183 (446)
.|.|.++.
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99999985
No 54
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.3e-18 Score=137.04 Aligned_cols=86 Identities=21% Similarity=0.339 Sum_probs=79.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.|| |..|+|++|+.+++++|||||+|.+.++|.+|+ .|| ..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 55679999999999999999999999997 999999999999999999999999999999999 787 789999999999
Q ss_pred cccCCCCCC
Q 013270 277 AAEGKNRTS 285 (446)
Q Consensus 277 a~~~~~~~~ 285 (446)
+.++..+..
T Consensus 90 a~~~~~~~~ 98 (103)
T 2dng_A 90 AEGRKQDKS 98 (103)
T ss_dssp CCCCCCCCS
T ss_pred ecCCCCCCC
Confidence 988765543
No 55
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=139.28 Aligned_cols=89 Identities=28% Similarity=0.410 Sum_probs=82.2
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeec-CCCCCceeEEEEEeCCHHHHHHHHHhC-C-CcccCeEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFD-ITTGKSRGFAIFVYKTVEGARKALEEP-Q-KMFEGHQLQ 273 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-~~~g~~kG~afV~F~~~~~A~~Ai~~~-~-~~~~Gr~l~ 273 (446)
.....++|||+|||+.+++++|+++|+.||.|..|+|+++ +.++.++|||||+|.+.++|.+|+..| | ..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3567899999999999999999999999999999999999 789999999999999999999999999 7 789999999
Q ss_pred EEEcccCCCCCC
Q 013270 274 CQKAAEGKNRTS 285 (446)
Q Consensus 274 v~~a~~~~~~~~ 285 (446)
|.|+.++.....
T Consensus 91 v~~a~~~~~~~~ 102 (107)
T 2cph_A 91 LEWADSEVTVQS 102 (107)
T ss_dssp EEECCCCCCCCC
T ss_pred EEeCCCCCCCCC
Confidence 999988766543
No 56
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=140.53 Aligned_cols=102 Identities=28% Similarity=0.419 Sum_probs=85.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...++|||+|||+++|+++|+++|+.||.|.+|.|++++ +++++|||||+|.+.++|++|++.+++. |.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 357999999999999999999999999999999999998 9999999999999999999999988755 99999999999
Q ss_pred ccCCCCCCCccCcccccCcceeec
Q 013270 183 SVGPTGPGVKEQGAAAQGERKIYV 206 (446)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~V 206 (446)
...................+..++
T Consensus 84 ~~~~~~~~~~~~~~~~~r~R~~~~ 107 (116)
T 2fy1_A 84 KKPSFQSGGRRRPPASSRNRSPSG 107 (116)
T ss_dssp CCSSCSSSSSCCCCCCSSCCCSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCccce
Confidence 766554444333333445555554
No 57
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=139.79 Aligned_cols=87 Identities=29% Similarity=0.489 Sum_probs=81.3
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~ 276 (446)
.....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..++..|+|+.|+|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred cccCCCC
Q 013270 277 AAEGKNR 283 (446)
Q Consensus 277 a~~~~~~ 283 (446)
+......
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9765443
No 58
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=8.5e-19 Score=142.39 Aligned_cols=82 Identities=22% Similarity=0.449 Sum_probs=74.5
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcc
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAA 278 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~ 278 (446)
...+|||+|||+++|+++|+++|+.||.|.+|+|++|. +.++|||||+|.+.++|.+||+.|+ ..|+||.|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999985 5689999999999999999999998 78999999999998
Q ss_pred cCCCC
Q 013270 279 EGKNR 283 (446)
Q Consensus 279 ~~~~~ 283 (446)
++..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 76543
No 59
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=9.4e-19 Score=140.02 Aligned_cols=89 Identities=25% Similarity=0.381 Sum_probs=81.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Ccc---cCeEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMF---EGHQLQ 273 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~---~Gr~l~ 273 (446)
....++|||+|||+.+++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+|+..|| ..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 5667899999999999999999999999999999999999999999999999999999999999998 556 889999
Q ss_pred EEEcccCCCCCCC
Q 013270 274 CQKAAEGKNRTSS 286 (446)
Q Consensus 274 v~~a~~~~~~~~~ 286 (446)
|.|+.++..+...
T Consensus 90 v~~a~~~~~~~~~ 102 (106)
T 2dgp_A 90 VKPADSESRGGSG 102 (106)
T ss_dssp EEECCCCSCCCCC
T ss_pred EEECCcccccCCC
Confidence 9999887765433
No 60
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=8.7e-19 Score=140.84 Aligned_cols=87 Identities=21% Similarity=0.405 Sum_probs=78.4
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~ 276 (446)
.....++|||+|||+.+++++|+++|+.||.|.+|+|++|+.++.++|||||+|.+.++|.+|+..++..|+|+.|.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 35667899999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred cccCCCC
Q 013270 277 AAEGKNR 283 (446)
Q Consensus 277 a~~~~~~ 283 (446)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9877643
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=139.04 Aligned_cols=85 Identities=20% Similarity=0.354 Sum_probs=79.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++|+.++.++|||||+|.+.++|.+|+..|| ..|+|+.|+|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999988 789999999999
Q ss_pred cccCCC
Q 013270 277 AAEGKN 282 (446)
Q Consensus 277 a~~~~~ 282 (446)
+.++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987653
No 62
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=9e-19 Score=134.12 Aligned_cols=81 Identities=28% Similarity=0.461 Sum_probs=77.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|++||.|..|+|++|+.+++++|||||+|.+.++|.+|++.+| ..|+|+.|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999988 789999999999
Q ss_pred cc
Q 013270 277 AA 278 (446)
Q Consensus 277 a~ 278 (446)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 63
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=1e-18 Score=137.11 Aligned_cols=83 Identities=20% Similarity=0.431 Sum_probs=78.3
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcc
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAA 278 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~ 278 (446)
+.++|||+|||+.+++++|+++|+.||.|.+|+|++|+.++.++|||||+|.+.++|.+|+..++ ..|+|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999999999999999999999999999999998 78999999999998
Q ss_pred cCCC
Q 013270 279 EGKN 282 (446)
Q Consensus 279 ~~~~ 282 (446)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7653
No 64
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=4.1e-19 Score=140.46 Aligned_cols=83 Identities=23% Similarity=0.354 Sum_probs=77.9
Q ss_pred cCcceeecCCCCC------cccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccC-e
Q 013270 199 QGERKIYVSNVPR------DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEG-H 270 (446)
Q Consensus 199 ~~~~~l~V~nLp~------~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~G-r 270 (446)
...++|||+|||+ .+++++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|.+||..|| ..|.| |
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999999999999999999999999999998 78999 9
Q ss_pred EEEEEEcccCC
Q 013270 271 QLQCQKAAEGK 281 (446)
Q Consensus 271 ~l~v~~a~~~~ 281 (446)
.|+|.++.++.
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999997643
No 65
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=138.83 Aligned_cols=89 Identities=24% Similarity=0.385 Sum_probs=81.7
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-------CcccCe
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-------KMFEGH 270 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-------~~~~Gr 270 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++|+.++.++|||||+|.+.++|.+||..++ ..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 5668899999999999999999999999999999999999999999999999999999999999986 459999
Q ss_pred EEEEEEcccCCCCCCC
Q 013270 271 QLQCQKAAEGKNRTSS 286 (446)
Q Consensus 271 ~l~v~~a~~~~~~~~~ 286 (446)
.|+|.|+.++..+...
T Consensus 92 ~l~v~~a~~~~~~~~~ 107 (111)
T 1x4h_A 92 QLKVDLAVTRDEAASG 107 (111)
T ss_dssp EEEEECCCCCCCCCCC
T ss_pred EEEEEECCCCccCCCC
Confidence 9999999887665433
No 66
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=135.34 Aligned_cols=83 Identities=22% Similarity=0.398 Sum_probs=78.4
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
.....++|||+|||+.+++++|+++|+.||.|..|+|++|+.+++++|||||+|.+.++|.+|+..|| ..|+|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999998 77999999999
Q ss_pred Eccc
Q 013270 276 KAAE 279 (446)
Q Consensus 276 ~a~~ 279 (446)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 67
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=137.04 Aligned_cols=86 Identities=16% Similarity=0.360 Sum_probs=79.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCC-CCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT-GKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~-g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
....++|||+|||+.+++++|+++|+.|| |..|+|++|+.+ ++++|||||+|.+.++|.+|| .++ ..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45679999999999999999999999999 999999999887 999999999999999999999 787 78999999999
Q ss_pred EcccCCCCCC
Q 013270 276 KAAEGKNRTS 285 (446)
Q Consensus 276 ~a~~~~~~~~ 285 (446)
++.++..+..
T Consensus 90 ~a~~~~~~~~ 99 (104)
T 1wi8_A 90 VADQAQDKDS 99 (104)
T ss_dssp ECCCCCCCCC
T ss_pred EccCCCCCCC
Confidence 9998776543
No 68
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=140.55 Aligned_cols=89 Identities=28% Similarity=0.374 Sum_probs=82.1
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCee--------EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Ccc
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIE--------TGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMF 267 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~--------~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~ 267 (446)
.....++|||+|||+.+|+++|+++|+.||.|. .|+|++|+.+++++|||||+|.+.++|.+||..|| ..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 356789999999999999999999999999999 69999999999999999999999999999999988 789
Q ss_pred cCeEEEEEEcccCCCCCC
Q 013270 268 EGHQLQCQKAAEGKNRTS 285 (446)
Q Consensus 268 ~Gr~l~v~~a~~~~~~~~ 285 (446)
+|+.|+|.++.++..+..
T Consensus 91 ~g~~l~V~~a~~~~~~~~ 108 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMNS 108 (113)
T ss_dssp TTEECEEECSSCCCCSTT
T ss_pred CCCEEEEEECCCCCCCCC
Confidence 999999999988766543
No 69
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=138.80 Aligned_cols=86 Identities=23% Similarity=0.405 Sum_probs=80.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++|+.++.++|||||+|.+.++|.+||.. + ..|+|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 56779999999999999999999999999999999999999999999999999999999999999 7 779999999999
Q ss_pred cccCCCCC
Q 013270 277 AAEGKNRT 284 (446)
Q Consensus 277 a~~~~~~~ 284 (446)
+.++....
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 98776543
No 70
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=3.3e-18 Score=136.57 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=79.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccC---eEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEG---HQLQ 273 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~G---r~l~ 273 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++|+ ++.++|||||+|.+.++|.+||..|| ..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4567999999999999999999999999999999999996 89999999999999999999999998 66787 9999
Q ss_pred EEEcccCCCCCC
Q 013270 274 CQKAAEGKNRTS 285 (446)
Q Consensus 274 v~~a~~~~~~~~ 285 (446)
|.|+.++..+..
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999998776543
No 71
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=1.8e-18 Score=139.41 Aligned_cols=86 Identities=21% Similarity=0.340 Sum_probs=80.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|+..|| ..|+|+.|+|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 5567899999999999999999999999999999999999999999999999999999999999988 789999999999
Q ss_pred cccCCCC
Q 013270 277 AAEGKNR 283 (446)
Q Consensus 277 a~~~~~~ 283 (446)
+.++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9877654
No 72
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=134.97 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=77.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.|| ..|+|+.|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 5567899999999999999999999999999999999999999999999999999999999999998 779999999999
Q ss_pred cc
Q 013270 277 AA 278 (446)
Q Consensus 277 a~ 278 (446)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 73
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=138.00 Aligned_cols=88 Identities=22% Similarity=0.382 Sum_probs=81.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcc-cCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Cc-ccCeEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFER-FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KM-FEGHQLQC 274 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~-~~Gr~l~v 274 (446)
....++|||+|||+.+|+++|+++|+. ||.|.+|+|++|+ ++.++|||||+|.+.++|.+|+..|+ .. |+|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 556789999999999999999999999 9999999999998 99999999999999999999999998 67 99999999
Q ss_pred EEcccCCCCCCC
Q 013270 275 QKAAEGKNRTSS 286 (446)
Q Consensus 275 ~~a~~~~~~~~~ 286 (446)
.++.++..+...
T Consensus 85 ~~a~~~~~~~~~ 96 (104)
T 2dhg_A 85 SVAIPKASRVKP 96 (104)
T ss_dssp CBCCCCCSCCCC
T ss_pred EEccCCCcCCCC
Confidence 999877655433
No 74
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.1e-18 Score=138.63 Aligned_cols=86 Identities=30% Similarity=0.557 Sum_probs=76.3
Q ss_pred cCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceee
Q 013270 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQ 180 (446)
Q Consensus 101 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~ 180 (446)
+.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+||..++..|+|+.|.|.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 34456799999999999999999999999999999999999989999999999999999999999999877999999999
Q ss_pred ecccCC
Q 013270 181 LASVGP 186 (446)
Q Consensus 181 ~~~~~~ 186 (446)
++....
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987543
No 75
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=136.91 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=73.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
+...++|||+|||+++|+++|+++|+.||+|.+|+|++|+. ++++|||||+|.+.++|.+||...+..|.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44579999999999999999999999999999999999986 99999999999999999999995456799999999986
Q ss_pred c
Q 013270 183 S 183 (446)
Q Consensus 183 ~ 183 (446)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 76
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=135.18 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=77.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeE--------EEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Cccc
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIET--------GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFE 268 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~ 268 (446)
....++|||+|||+.+++++|+++|++||.|.. |+|++|+.+++++|||||+|.+.++|.+|++.|| ..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 566799999999999999999999999999999 9999999999999999999999999999999988 7899
Q ss_pred CeEEEEEEcc
Q 013270 269 GHQLQCQKAA 278 (446)
Q Consensus 269 Gr~l~v~~a~ 278 (446)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 77
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.6e-18 Score=133.27 Aligned_cols=85 Identities=20% Similarity=0.343 Sum_probs=77.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||+..+..|.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44679999999999999999999999999999999999999999999999999999999999994445699999999998
Q ss_pred ccCCC
Q 013270 183 SVGPT 187 (446)
Q Consensus 183 ~~~~~ 187 (446)
.....
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 75543
No 78
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=137.15 Aligned_cols=84 Identities=30% Similarity=0.567 Sum_probs=79.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..|+|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 5667899999999999999999999999999999999999999999999999999999999999988 779999999999
Q ss_pred cccCC
Q 013270 277 AAEGK 281 (446)
Q Consensus 277 a~~~~ 281 (446)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 97753
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.9e-19 Score=137.76 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=73.5
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC---CcccCeEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ---KMFEGHQLQC 274 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~---~~~~Gr~l~v 274 (446)
....++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.++ ..|+||+|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 556789999999999999999999999999999999876 7999999999999999999764 4699999999
Q ss_pred EEcccCCCCC
Q 013270 275 QKAAEGKNRT 284 (446)
Q Consensus 275 ~~a~~~~~~~ 284 (446)
.|+..+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998766543
No 80
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=138.83 Aligned_cols=86 Identities=23% Similarity=0.425 Sum_probs=79.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+++++++|+++|+.||.|..|.|++|. ++.++|||||+|.+.++|.+|+..|| ..|+|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999997 99999999999999999999999998 789999999999
Q ss_pred cccCCCCC
Q 013270 277 AAEGKNRT 284 (446)
Q Consensus 277 a~~~~~~~ 284 (446)
+.++....
T Consensus 83 a~~~~~~~ 90 (116)
T 2fy1_A 83 AKKPSFQS 90 (116)
T ss_dssp CCCSSCSS
T ss_pred CCCCCCCC
Confidence 98766443
No 81
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-18 Score=142.90 Aligned_cols=89 Identities=28% Similarity=0.445 Sum_probs=82.5
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
.....++|||+|||+.+++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+|+..|| ..|+|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999998 67999999999
Q ss_pred EcccCCCCCC
Q 013270 276 KAAEGKNRTS 285 (446)
Q Consensus 276 ~a~~~~~~~~ 285 (446)
++.++..+..
T Consensus 118 ~a~~~~~~~~ 127 (139)
T 1u6f_A 118 LAASGHQRPG 127 (139)
T ss_dssp ESSCCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9998776543
No 82
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.5e-18 Score=133.98 Aligned_cols=85 Identities=22% Similarity=0.483 Sum_probs=78.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEc
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a 277 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++|+.+++++|||||+|.+.++|.+||.. ...|+|+.|.|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 55678999999999999999999999999999999999999999999999999999999999995 35799999999999
Q ss_pred ccCCCC
Q 013270 278 AEGKNR 283 (446)
Q Consensus 278 ~~~~~~ 283 (446)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 887654
No 83
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=1.8e-18 Score=143.28 Aligned_cols=85 Identities=21% Similarity=0.381 Sum_probs=80.3
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
..+.++|||+|||+.+++++|+++|+.||.|..|+|++|+.+++++|||||+|.+.++|.+||..|+ ..|+|+.|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 5667899999999999999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred cccCCC
Q 013270 277 AAEGKN 282 (446)
Q Consensus 277 a~~~~~ 282 (446)
+.++..
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 987653
No 84
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.4e-18 Score=138.47 Aligned_cols=85 Identities=40% Similarity=0.669 Sum_probs=79.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~ 181 (446)
.+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||..+++.|.|+.|.|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred cccCC
Q 013270 182 ASVGP 186 (446)
Q Consensus 182 ~~~~~ 186 (446)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 86543
No 85
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=135.06 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=79.5
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCee-EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeE----
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIE-TGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQ---- 271 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~-~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~---- 271 (446)
....++|||+|||+.+++++|+++|++||.|. +|+|++|+.+++++|||||+|.+.++|.+|+..|| ..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 99999999999999999999999999999999998 7799999
Q ss_pred EEEEEcccCCC
Q 013270 272 LQCQKAAEGKN 282 (446)
Q Consensus 272 l~v~~a~~~~~ 282 (446)
|+|.|+.+...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999976643
No 86
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.9e-18 Score=132.07 Aligned_cols=84 Identities=24% Similarity=0.389 Sum_probs=77.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~ 182 (446)
...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3579999999999999999999999999999999999998999999999999999999999997765 499999999998
Q ss_pred ccCCC
Q 013270 183 SVGPT 187 (446)
Q Consensus 183 ~~~~~ 187 (446)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 75543
No 87
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=8e-19 Score=135.98 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=70.4
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCC--CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeecc
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSG--EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLAS 183 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~~ 183 (446)
.+|||+|||+++|+++|+++|+.|| .|.+|+|++|+.+|+++|||||+|.+.++|.+|++.+++ .+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999999999999999999999999999999998875 5999999999886
Q ss_pred cCC
Q 013270 184 VGP 186 (446)
Q Consensus 184 ~~~ 186 (446)
..+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 88
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=145.14 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=79.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeE--EEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-C----cccCe
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIET--GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-K----MFEGH 270 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~----~~~Gr 270 (446)
....++|||+|||+.+|+++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|| . .|+||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 566789999999999999999999999999977 99999999999999999999999 9999999999 6 89999
Q ss_pred EEEEEEcccCCCCC
Q 013270 271 QLQCQKAAEGKNRT 284 (446)
Q Consensus 271 ~l~v~~a~~~~~~~ 284 (446)
.|+|.++.++..+.
T Consensus 99 ~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 99 TINVEFAKGSKRDM 112 (131)
T ss_dssp CCCCEECCCSCCCC
T ss_pred EEEEEECCCCCCCC
Confidence 99999998876543
No 89
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=135.90 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=72.3
Q ss_pred ccCcceeecCCCCC-cccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC---CcccCeEEE
Q 013270 198 AQGERKIYVSNVPR-DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ---KMFEGHQLQ 273 (446)
Q Consensus 198 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~---~~~~Gr~l~ 273 (446)
..+.++|||+|||+ .+|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|..|++.|+ ..|+||+|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 44678999999999 9999999999999999999999876 6899999999999999999887 349999999
Q ss_pred EEEcccCCCC
Q 013270 274 CQKAAEGKNR 283 (446)
Q Consensus 274 v~~a~~~~~~ 283 (446)
|.|+......
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999865543
No 90
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.3e-18 Score=134.87 Aligned_cols=86 Identities=30% Similarity=0.390 Sum_probs=78.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||..+++. |.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456799999999999999999999999999999999999989999999999999999999999988755 999999999
Q ss_pred ecccCCC
Q 013270 181 LASVGPT 187 (446)
Q Consensus 181 ~~~~~~~ 187 (446)
++.....
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9875443
No 91
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=139.38 Aligned_cols=87 Identities=17% Similarity=0.415 Sum_probs=80.3
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEc
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a 277 (446)
....++|||+|||+.+|+++|+++|+.||.|..|+|++|+.++.++|||||+|.+.++|.+||...+..|+|+.|+|.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 45679999999999999999999999999999999999999999999999999999999999999337899999999999
Q ss_pred ccCCCCC
Q 013270 278 AEGKNRT 284 (446)
Q Consensus 278 ~~~~~~~ 284 (446)
.++....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 8876643
No 92
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=132.38 Aligned_cols=80 Identities=28% Similarity=0.411 Sum_probs=74.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~~ 183 (446)
..++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 468999999999999999999999999999999999988999999999999999999999998765 4999999999986
Q ss_pred c
Q 013270 184 V 184 (446)
Q Consensus 184 ~ 184 (446)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 93
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.9e-18 Score=133.57 Aligned_cols=87 Identities=25% Similarity=0.431 Sum_probs=78.8
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
.....++|||+|||+.+++++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|.+|+..|+ ..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 356779999999999999999999999999999999999853 489999999999999999999988 78999999999
Q ss_pred EcccCCCCCC
Q 013270 276 KAAEGKNRTS 285 (446)
Q Consensus 276 ~a~~~~~~~~ 285 (446)
++.++..+..
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cq3_A 89 NATARVMTNS 98 (103)
T ss_dssp ECCSSCCCCC
T ss_pred EcccCCCCCC
Confidence 9988766543
No 94
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=134.03 Aligned_cols=85 Identities=28% Similarity=0.461 Sum_probs=78.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
..+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||..+++. |.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346799999999999999999999999999999999999889999999999999999999999888755 9999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 876544
No 95
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=8.1e-18 Score=136.66 Aligned_cols=87 Identities=26% Similarity=0.423 Sum_probs=79.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++||..+++. |.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999999999889999999999999999999999988755 999999999
Q ss_pred ecccCCCC
Q 013270 181 LASVGPTG 188 (446)
Q Consensus 181 ~~~~~~~~ 188 (446)
++......
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 98765544
No 96
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=132.96 Aligned_cols=83 Identities=18% Similarity=0.353 Sum_probs=77.1
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCC-ceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGK-SRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~-~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
..++|||+|||+++|+++|+++|+.||.|.+|+|++++.++. ++|||||+|.+.++|.+|+..|| ..|+|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999999987766 89999999999999999999988 7899999999999
Q ss_pred ccCCC
Q 013270 278 AEGKN 282 (446)
Q Consensus 278 ~~~~~ 282 (446)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77654
No 97
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.9e-18 Score=134.22 Aligned_cols=87 Identities=18% Similarity=0.286 Sum_probs=78.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|.+|+|++|+. .++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 56679999999999999999999999999999999999853 369999999999999999999988 679999999999
Q ss_pred cccCCCCCCC
Q 013270 277 AAEGKNRTSS 286 (446)
Q Consensus 277 a~~~~~~~~~ 286 (446)
+.++..+...
T Consensus 90 a~~~~~~~~~ 99 (103)
T 2cqi_A 90 ATTPSSQKSG 99 (103)
T ss_dssp CCCTTCCCCC
T ss_pred CCCCcccccC
Confidence 9887655433
No 98
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=137.27 Aligned_cols=80 Identities=16% Similarity=0.343 Sum_probs=74.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+++|+++|+++|++||.|.+|+|++|+. +.++|||||+|.+.++|.+||. ++ ..|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999976 9999999999999999999999 66 789999999999
Q ss_pred ccc
Q 013270 277 AAE 279 (446)
Q Consensus 277 a~~ 279 (446)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 765
No 99
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=4e-18 Score=131.72 Aligned_cols=81 Identities=27% Similarity=0.466 Sum_probs=76.3
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcc
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAA 278 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~ 278 (446)
..++|||+|||+.+++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|+ .++ ..|+|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999889999999999999999999999 787 78999999999997
Q ss_pred cCC
Q 013270 279 EGK 281 (446)
Q Consensus 279 ~~~ 281 (446)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 643
No 100
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=146.49 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=76.2
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccC--CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFG--EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
..++|||+|||+++|+++|+++|+.|| .|.+|+|++|+.+|+++|||||+|.+.++|.+||..|| ..|+||.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999999999999999999999999999999998 789999999999
Q ss_pred cccC
Q 013270 277 AAEG 280 (446)
Q Consensus 277 a~~~ 280 (446)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9653
No 101
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=2.7e-18 Score=139.48 Aligned_cols=103 Identities=19% Similarity=0.332 Sum_probs=90.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...++|||+|||+++|+++|+++|+.||.|.+|+|+++ +.++|||||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35789999999999999999999999999999999865 456999999999999999999977654 99999999997
Q ss_pred ccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCC
Q 013270 183 SVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227 (446)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 227 (446)
..... .++++...++++|.++|++||.
T Consensus 83 ~~~~~------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRA------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHH------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChh------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 52211 1678889999999999999985
No 102
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=9.2e-19 Score=174.43 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=110.6
Q ss_pred HHHHhhccCCCeeEEEEEe----eC-CCCCccceE--EEEEccHHHHHHHHHcCCCc-ccCccceeee-------cccCC
Q 013270 122 SLLSAFGGSGEIEECKLVI----DK-VTGKAKGFA--FIVFKTRKAAVKALKNPQRK-VNNRMASCQL-------ASVGP 186 (446)
Q Consensus 122 ~L~~~F~~~G~v~~v~i~~----~~-~~g~~~G~a--fV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~-------~~~~~ 186 (446)
.|..+|..+++|..|..+. ++ .+....|++ |+.|.....+..++...+.. ...+...... .....
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3789999999998874332 21 122223343 78887766655554433211 1111000000 00000
Q ss_pred CCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-C
Q 013270 187 TGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-K 265 (446)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~ 265 (446)
...............++|||+|||+.+|+++|+++|+.||.|+.|.|+.|+.++.++|||||+|.+.++|.+||..|| .
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 000001111124456899999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred cccCeEEEEEEcccCCC
Q 013270 266 MFEGHQLQCQKAAEGKN 282 (446)
Q Consensus 266 ~~~Gr~l~v~~a~~~~~ 282 (446)
.|+|+.|.|.|+.....
T Consensus 168 ~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRTV 184 (437)
T ss_pred EECCEEEEEEEeCCCCC
Confidence 89999999999986543
No 103
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=133.61 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=74.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC---CcccCeEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ---KMFEGHQLQC 274 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~---~~~~Gr~l~v 274 (446)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..++ ..|.||+|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 556789999999999999999999999999999999876 8999999999999999999764 5699999999
Q ss_pred EEcccCCCCCC
Q 013270 275 QKAAEGKNRTS 285 (446)
Q Consensus 275 ~~a~~~~~~~~ 285 (446)
.|+..+..+..
T Consensus 86 ~~a~~~~~~~~ 96 (101)
T 2cq1_A 86 QYSNHKELKTS 96 (101)
T ss_dssp EECSCSSCCCC
T ss_pred EEcCcccCcCC
Confidence 99987766543
No 104
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=3.3e-18 Score=130.98 Aligned_cols=80 Identities=29% Similarity=0.454 Sum_probs=74.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++. +.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999999999999999999889999999999999999999999887655 9999999998
Q ss_pred c
Q 013270 182 A 182 (446)
Q Consensus 182 ~ 182 (446)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 6
No 105
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=3.8e-18 Score=139.25 Aligned_cols=82 Identities=16% Similarity=0.293 Sum_probs=77.1
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
.....++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.|| ..|+|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35567999999999999999999999999999999999999999999999999999999999999998 78999999999
Q ss_pred Ecc
Q 013270 276 KAA 278 (446)
Q Consensus 276 ~a~ 278 (446)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 106
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=5e-18 Score=129.29 Aligned_cols=79 Identities=24% Similarity=0.362 Sum_probs=74.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeeccc
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLASV 184 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~~~ 184 (446)
+++|||+|||.++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999998765 49999999999864
No 107
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=137.34 Aligned_cols=85 Identities=28% Similarity=0.538 Sum_probs=79.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|++.+| ..|+|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 4557899999999999999999999999999999999999999999999999999999999999998 779999999999
Q ss_pred cccCCC
Q 013270 277 AAEGKN 282 (446)
Q Consensus 277 a~~~~~ 282 (446)
+.++..
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987654
No 108
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=6.5e-18 Score=137.23 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=78.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++||+.++.. |.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3446799999999999999999999999999999999999989999999999999999999999887654 999999999
Q ss_pred ecccCCC
Q 013270 181 LASVGPT 187 (446)
Q Consensus 181 ~~~~~~~ 187 (446)
++.....
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9875543
No 109
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.8e-18 Score=134.08 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=78.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||..++.. |.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456799999999999999999999999999999999999989999999999999999999999988654 999999999
Q ss_pred ecccCCC
Q 013270 181 LASVGPT 187 (446)
Q Consensus 181 ~~~~~~~ 187 (446)
++.....
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9875443
No 110
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.5e-19 Score=142.24 Aligned_cols=85 Identities=19% Similarity=0.332 Sum_probs=78.7
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++|+.++.++|||||+|.+.++|.+|| .+| ..|+|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 455789999999999999999999999999999999999999999999999999999999999 777 779999999999
Q ss_pred cccCCCC
Q 013270 277 AAEGKNR 283 (446)
Q Consensus 277 a~~~~~~ 283 (446)
+.++..+
T Consensus 101 a~~~~~~ 107 (114)
T 2cq4_A 101 SQAEKNR 107 (114)
T ss_dssp HHHHHHH
T ss_pred cCCCccC
Confidence 9876543
No 111
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=132.64 Aligned_cols=84 Identities=26% Similarity=0.356 Sum_probs=77.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEE-EEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEEC-KLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
...++|||+|||+++|+++|+++|+.||.|.+| +|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357999999999999999999999999999999 99999889999999999999999999999988755 9999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 875543
No 112
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.1e-18 Score=134.97 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=78.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||..+++ .|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999997764 59999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 875543
No 113
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=8.3e-19 Score=146.43 Aligned_cols=124 Identities=11% Similarity=0.073 Sum_probs=73.7
Q ss_pred cceEEEEEccHHHHHHHHHcCCCcccCccceeeecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCC
Q 013270 148 KGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGE 227 (446)
Q Consensus 148 ~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 227 (446)
+|+||.+|..++.+..++......+.|....-.... ..........++|||+|||+++|+++|+++|+.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~--------~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G- 71 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGD--------SEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN- 71 (139)
T ss_dssp ----------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-
T ss_pred CCcccccccCccccchhcccchhccCCCCCCCCCCC--------cccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-
Confidence 368889998888887777765444444332111100 01112245678999999999999999999999999
Q ss_pred eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccCCC
Q 013270 228 IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEGKN 282 (446)
Q Consensus 228 V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~ 282 (446)
|++|+|++|+. ++++|||||+|.+.++|.+|| .+| ..|+||.|+|.++.+...
T Consensus 72 i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 72 PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 77999999975 999999999999999999999 666 789999999999877654
No 114
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=133.31 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=77.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..++++.++.+++++|||||+|.+.++|.+|++.|| ..|+|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred cccC
Q 013270 277 AAEG 280 (446)
Q Consensus 277 a~~~ 280 (446)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 115
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=3.3e-18 Score=142.36 Aligned_cols=81 Identities=11% Similarity=0.145 Sum_probs=75.3
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCC---eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGE---IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~ 273 (446)
....++|||+|||+++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|.+||+ +| ..|+||.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999999999999999999999 89999999976 9999999999999999999999 87 789999999
Q ss_pred EEEcccC
Q 013270 274 CQKAAEG 280 (446)
Q Consensus 274 v~~a~~~ 280 (446)
|.++..+
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998644
No 116
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=132.72 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=76.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|.+|+|++|+. ++++|||||+|.+.++|.+|+..|| ..|+|+.|+|.|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 55678999999999999999999999999999999999975 9999999999999999999999988 789999999999
Q ss_pred ccc
Q 013270 277 AAE 279 (446)
Q Consensus 277 a~~ 279 (446)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 117
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=4.6e-18 Score=132.57 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=71.3
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-C--cccCeEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-K--MFEGHQLQC 274 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~--~~~Gr~l~v 274 (446)
..++++|||+|||+.+|+++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|+..++ . .|.||+|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 557789999999999999999999999999999999864 8999999999999999999997 4 389999999
Q ss_pred EEcccCC
Q 013270 275 QKAAEGK 281 (446)
Q Consensus 275 ~~a~~~~ 281 (446)
.|++.++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9997654
No 118
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=3.5e-18 Score=155.81 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=75.9
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccC--CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFG--EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
..++|||+||++.+|+++|+++|+.|| .|++|+|++|+.+++++|||||+|.+.++|.+||+.|| ..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999999998 789999999999
Q ss_pred cccC
Q 013270 277 AAEG 280 (446)
Q Consensus 277 a~~~ 280 (446)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 119
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-18 Score=130.16 Aligned_cols=76 Identities=24% Similarity=0.465 Sum_probs=73.5
Q ss_pred ceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEc
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a 277 (446)
++|||+|||+++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|+..++..++|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999998999999999999999999999999998899999999987
No 120
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-18 Score=129.05 Aligned_cols=76 Identities=33% Similarity=0.663 Sum_probs=73.1
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|.+|+..++..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5899999999999999999999999999999999998999999999999999999999999996699999999886
No 121
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=135.26 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=79.5
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|.+|+..|| ..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4567899999999999999999999999999999999996 69999999999999999999999988 789999999999
Q ss_pred cccCCCCCC
Q 013270 277 AAEGKNRTS 285 (446)
Q Consensus 277 a~~~~~~~~ 285 (446)
+.....+..
T Consensus 91 a~~~~~~~~ 99 (114)
T 2do0_A 91 DERALPKGD 99 (114)
T ss_dssp CSCCCCCSC
T ss_pred cccCCCCCC
Confidence 986655433
No 122
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=132.37 Aligned_cols=83 Identities=22% Similarity=0.499 Sum_probs=76.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999998 9999999999999999999999887655 999999999
Q ss_pred ecccC
Q 013270 181 LASVG 185 (446)
Q Consensus 181 ~~~~~ 185 (446)
++...
T Consensus 92 ~a~~~ 96 (100)
T 2do4_A 92 ISNSG 96 (100)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98644
No 123
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.4e-18 Score=131.63 Aligned_cols=80 Identities=26% Similarity=0.433 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++. |.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 456799999999999999999999999999999999999989999999999999999999999988755 9999999998
Q ss_pred c
Q 013270 182 A 182 (446)
Q Consensus 182 ~ 182 (446)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 6
No 124
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.9e-18 Score=132.26 Aligned_cols=84 Identities=26% Similarity=0.445 Sum_probs=76.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCC---CCCccceEEEEEccHHHHHHHHHcCCCc-ccCcccee
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKV---TGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASC 179 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~---~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v 179 (446)
.+.++|||+|||+++|+++|+++|+.||.|.+|+|++++. +++++|||||+|.+.++|.+|+..+++. |.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3579999999999999999999999999999999999986 6699999999999999999999987655 99999999
Q ss_pred eecccCCC
Q 013270 180 QLASVGPT 187 (446)
Q Consensus 180 ~~~~~~~~ 187 (446)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99875443
No 125
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=2.6e-18 Score=128.24 Aligned_cols=74 Identities=27% Similarity=0.578 Sum_probs=70.6
Q ss_pred eeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 203 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
+|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|.+|++ ++ ..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 66 8899999999985
No 126
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=1.8e-18 Score=136.71 Aligned_cols=79 Identities=27% Similarity=0.344 Sum_probs=74.4
Q ss_pred CCCeEEEeCCCC------CCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccC-cc
Q 013270 105 SQRKIFVHGLGW------DTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNN-RM 176 (446)
Q Consensus 105 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g-~~ 176 (446)
..++|||+|||+ ++++++|+++|++||.|.+|+|++|+.||+++|||||+|.+.++|.+||+.+++. +.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999999999999999999999999999999999999987755 998 99
Q ss_pred ceeeecc
Q 013270 177 ASCQLAS 183 (446)
Q Consensus 177 i~v~~~~ 183 (446)
|.|.++.
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 9999875
No 127
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1.6e-17 Score=132.51 Aligned_cols=85 Identities=26% Similarity=0.396 Sum_probs=77.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccC---ccc
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNN---RMA 177 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g---~~i 177 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|.+||..+++. +.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999997 8999999999999999999999988765 777 999
Q ss_pred eeeecccCCC
Q 013270 178 SCQLASVGPT 187 (446)
Q Consensus 178 ~v~~~~~~~~ 187 (446)
.|.++.....
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999875543
No 128
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-18 Score=133.88 Aligned_cols=85 Identities=29% Similarity=0.481 Sum_probs=78.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~ 181 (446)
..+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||+.++. .|.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44679999999999999999999999999999999999998999999999999999999999988765 49999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 875544
No 129
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.8e-18 Score=133.78 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=77.3
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeE-EEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIET-GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+|+++|+++|+.||.|.. |+|++| .+++++|||||+|.+.++|.+||...+..|+||.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 456789999999999999999999999999998 889998 799999999999999999999999933889999999999
Q ss_pred cccCCCC
Q 013270 277 AAEGKNR 283 (446)
Q Consensus 277 a~~~~~~ 283 (446)
+..+...
T Consensus 91 ~~~~~~~ 97 (104)
T 1wg5_A 91 SSRAEVR 97 (104)
T ss_dssp ECTTTSC
T ss_pred CCHHHHH
Confidence 9766543
No 130
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.4e-18 Score=135.35 Aligned_cols=86 Identities=24% Similarity=0.382 Sum_probs=78.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC------Cc-ccC
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ------RK-VNN 174 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~------~~-~~g 174 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||..++ .. |.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34467999999999999999999999999999999999999999999999999999999999999886 44 999
Q ss_pred ccceeeecccCCC
Q 013270 175 RMASCQLASVGPT 187 (446)
Q Consensus 175 ~~i~v~~~~~~~~ 187 (446)
+.|.|.++.....
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999875543
No 131
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.4e-18 Score=134.45 Aligned_cols=83 Identities=27% Similarity=0.398 Sum_probs=76.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999998765 59999999999
Q ss_pred cccC
Q 013270 182 ASVG 185 (446)
Q Consensus 182 ~~~~ 185 (446)
+...
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8654
No 132
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=132.20 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=76.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCee-EEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCcc----
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIE-ECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRM---- 176 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~-~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~---- 176 (446)
....++|||+|||+++|+++|+++|+.||.|. +|+|++++.+++++|||||+|.+.++|++|+..+++. +.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34679999999999999999999999999999 9999999999999999999999999999999988755 99999
Q ss_pred ceeeecccC
Q 013270 177 ASCQLASVG 185 (446)
Q Consensus 177 i~v~~~~~~ 185 (446)
|+|.++...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999988643
No 133
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=9.7e-18 Score=134.41 Aligned_cols=84 Identities=26% Similarity=0.433 Sum_probs=77.2
Q ss_pred cCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCcccee
Q 013270 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASC 179 (446)
Q Consensus 101 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v 179 (446)
......++|||+|||.++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++. +.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33456799999999999999999999999999999999999999999999999999999999999977654 99999999
Q ss_pred eeccc
Q 013270 180 QLASV 184 (446)
Q Consensus 180 ~~~~~ 184 (446)
.++..
T Consensus 101 ~~a~~ 105 (108)
T 2jrs_A 101 GHVTE 105 (108)
T ss_dssp ECSCS
T ss_pred EEccc
Confidence 98764
No 134
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=9.7e-18 Score=130.41 Aligned_cols=83 Identities=22% Similarity=0.398 Sum_probs=77.2
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|++||.|..|+|+++ +++++|||||+|.+.++|.+|+..|+ ..|+|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999985 79999999999999999999999988 779999999999
Q ss_pred cccCCC
Q 013270 277 AAEGKN 282 (446)
Q Consensus 277 a~~~~~ 282 (446)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987654
No 135
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=132.76 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=74.2
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC---CcccCeEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ---KMFEGHQLQC 274 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~---~~~~Gr~l~v 274 (446)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..++ ..|+|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999865 8999999999999999999875 3599999999
Q ss_pred EEcccCCCCCCC
Q 013270 275 QKAAEGKNRTSS 286 (446)
Q Consensus 275 ~~a~~~~~~~~~ 286 (446)
.|+..+..+...
T Consensus 86 ~~a~~~~~~~~~ 97 (104)
T 1wex_A 86 NYSTSKRITRPG 97 (104)
T ss_dssp EECSSSSCCCSC
T ss_pred EEccCccccCCC
Confidence 999887765444
No 136
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.5e-18 Score=132.21 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=76.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999987655 999999999
Q ss_pred ecc
Q 013270 181 LAS 183 (446)
Q Consensus 181 ~~~ 183 (446)
++.
T Consensus 91 ~a~ 93 (95)
T 2cqc_A 91 GPS 93 (95)
T ss_dssp CCS
T ss_pred ecC
Confidence 875
No 137
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=132.49 Aligned_cols=81 Identities=30% Similarity=0.354 Sum_probs=75.3
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeE--------EEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cc
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEE--------CKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KV 172 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~ 172 (446)
.....++|||+|||+++|+++|+++|++||.|.+ |+|++++.+|+++|||||+|.+.++|.+|++.+++ .+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456799999999999999999999999999999 99999999999999999999999999999997765 49
Q ss_pred cCccceeeec
Q 013270 173 NNRMASCQLA 182 (446)
Q Consensus 173 ~g~~i~v~~~ 182 (446)
.|+.|.|.++
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999986
No 138
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=6.5e-18 Score=132.54 Aligned_cols=80 Identities=26% Similarity=0.539 Sum_probs=75.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeeccc
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASV 184 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~ 184 (446)
+++|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.+++. +.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 689999999999999999999999999999999999989999999999999999999999887655 9999999999864
Q ss_pred C
Q 013270 185 G 185 (446)
Q Consensus 185 ~ 185 (446)
.
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 3
No 139
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=3.6e-18 Score=133.69 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=75.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|++||.|..++++.++.+++++|||||+|.+.++|.+|++.|| ..|+||.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999988 789999999999
Q ss_pred ccc
Q 013270 277 AAE 279 (446)
Q Consensus 277 a~~ 279 (446)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 854
No 140
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.4e-18 Score=132.17 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=75.6
Q ss_pred ccCcceeecCCCCCcccHHHHH----HHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLR----GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQL 272 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l 272 (446)
....++|||+|||+.+++++|+ ++|++||.|.+|+|++|+.+ +|||||+|.+.++|.+|+..|| ..|+||.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4456899999999999999999 99999999999999999765 8999999999999999999998 67999999
Q ss_pred EEEEcccCCCC
Q 013270 273 QCQKAAEGKNR 283 (446)
Q Consensus 273 ~v~~a~~~~~~ 283 (446)
+|.++.+...+
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999776543
No 141
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-18 Score=134.35 Aligned_cols=85 Identities=27% Similarity=0.401 Sum_probs=78.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++. |.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 446899999999999999999999999999999999999999999999999999999999999887655 9999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 875543
No 142
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8e-18 Score=133.35 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=74.7
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+++|+++|+++|+.|| |.+|+|++|+ +++++|||||+|.+.++|.+||+ +| ..|+||.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 55678999999999999999999999999 4599999997 89999999999999999999996 46 889999999999
Q ss_pred cccCCC
Q 013270 277 AAEGKN 282 (446)
Q Consensus 277 a~~~~~ 282 (446)
+.+...
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 877654
No 143
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=128.51 Aligned_cols=81 Identities=14% Similarity=0.268 Sum_probs=76.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.| .|.+|+|+++ .+|+++|||||+|.+.++|.+|+. +| ..|+||.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 799999999999999999999999 88 779999999999
Q ss_pred cccCC
Q 013270 277 AAEGK 281 (446)
Q Consensus 277 a~~~~ 281 (446)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 144
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=133.17 Aligned_cols=86 Identities=24% Similarity=0.382 Sum_probs=78.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEee-CCCCCccceEEEEEccHHHHHHHHHcC-C-CcccCccce
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVID-KVTGKAKGFAFIVFKTRKAAVKALKNP-Q-RKVNNRMAS 178 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~-~~~g~~~G~afV~f~~~~~A~~Al~~~-~-~~~~g~~i~ 178 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+++ +.+++++|||||+|.+.++|.+||..+ + ..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456899999999999999999999999999999999999 789999999999999999999999997 5 559999999
Q ss_pred eeecccCCC
Q 013270 179 CQLASVGPT 187 (446)
Q Consensus 179 v~~~~~~~~ 187 (446)
|.++.....
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999875543
No 145
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=7.1e-18 Score=139.36 Aligned_cols=87 Identities=20% Similarity=0.343 Sum_probs=81.3
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+|+++|+++|+.||.|..|.|++|+.++.++|||||+|.+.++|.+|+..|| ..|+|+.|.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 5567899999999999999999999999999999999999899999999999999999999999988 789999999999
Q ss_pred cccCCCCC
Q 013270 277 AAEGKNRT 284 (446)
Q Consensus 277 a~~~~~~~ 284 (446)
+.++....
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 98776543
No 146
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.6e-18 Score=130.16 Aligned_cols=80 Identities=30% Similarity=0.427 Sum_probs=74.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.|++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35799999999999999999999999999999999999999999999999999999999999988755 99999988765
Q ss_pred c
Q 013270 183 S 183 (446)
Q Consensus 183 ~ 183 (446)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 147
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.2e-18 Score=135.63 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=74.2
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC---CcccCeEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ---KMFEGHQLQC 274 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~---~~~~Gr~l~v 274 (446)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.++ ..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456789999999999999999999999999999999987 8999999999999999999886 4699999999
Q ss_pred EEcccCCCCC
Q 013270 275 QKAAEGKNRT 284 (446)
Q Consensus 275 ~~a~~~~~~~ 284 (446)
.|+..+..+.
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998776654
No 148
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.2e-17 Score=133.84 Aligned_cols=80 Identities=23% Similarity=0.393 Sum_probs=76.2
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|.+|+..|+ ..|+|+.|+|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 5668999999999999999999999999999999999997 99999999999999999999999988 789999999999
Q ss_pred cc
Q 013270 277 AA 278 (446)
Q Consensus 277 a~ 278 (446)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 149
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=131.36 Aligned_cols=84 Identities=25% Similarity=0.380 Sum_probs=76.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|+++ +++++|||||+|.+.++|.+|+..+++ .|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446899999999999999999999999999999999998 899999999999999999999998765 49999999999
Q ss_pred cccCCCC
Q 013270 182 ASVGPTG 188 (446)
Q Consensus 182 ~~~~~~~ 188 (446)
+......
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 8765443
No 150
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=1.8e-17 Score=142.31 Aligned_cols=85 Identities=19% Similarity=0.285 Sum_probs=80.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..|| ..|+|+.|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred cccCCC
Q 013270 277 AAEGKN 282 (446)
Q Consensus 277 a~~~~~ 282 (446)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987554
No 151
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=5.4e-18 Score=126.47 Aligned_cols=75 Identities=33% Similarity=0.593 Sum_probs=70.4
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
+|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++..+..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999995456699999999874
No 152
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=133.17 Aligned_cols=84 Identities=20% Similarity=0.398 Sum_probs=76.2
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.+ +.++|||||+|.+.++|.+||+.|| ..|+|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3556789999999999999999999999999999999654 5689999999999999999999998 78999999999
Q ss_pred EcccCCCC
Q 013270 276 KAAEGKNR 283 (446)
Q Consensus 276 ~a~~~~~~ 283 (446)
|+.++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99887654
No 153
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=130.98 Aligned_cols=84 Identities=27% Similarity=0.509 Sum_probs=77.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||.. ...|.|+.|.|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 44679999999999999999999999999999999999998999999999999999999999995 55799999999998
Q ss_pred ccCCC
Q 013270 183 SVGPT 187 (446)
Q Consensus 183 ~~~~~ 187 (446)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 75543
No 154
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=132.24 Aligned_cols=81 Identities=20% Similarity=0.314 Sum_probs=72.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
....++|||+|||+++|+++|+++|+.||. .+|+|++|+ +++++|||||+|.+.++|++||+..+..|.||.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 445789999999999999999999999995 599999997 899999999999999999999976456699999999987
Q ss_pred ccC
Q 013270 183 SVG 185 (446)
Q Consensus 183 ~~~ 185 (446)
...
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 155
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.1e-18 Score=134.42 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=72.8
Q ss_pred ccCcceeecCCCCCc-ccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC---CcccCeEEE
Q 013270 198 AQGERKIYVSNVPRD-VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ---KMFEGHQLQ 273 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~---~~~~Gr~l~ 273 (446)
..+.++|||+|||++ +++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.|+ ..|+||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 556889999999998 999999999999999999999754 8999999999999999999875 459999999
Q ss_pred EEEcccCCCCC
Q 013270 274 CQKAAEGKNRT 284 (446)
Q Consensus 274 v~~a~~~~~~~ 284 (446)
|.|+..+....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998766543
No 156
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.1e-17 Score=136.58 Aligned_cols=80 Identities=28% Similarity=0.324 Sum_probs=75.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.+++. |.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 446799999999999999999999999999999999999989999999999999999999999988655 9999999988
Q ss_pred c
Q 013270 182 A 182 (446)
Q Consensus 182 ~ 182 (446)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 157
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=137.56 Aligned_cols=82 Identities=28% Similarity=0.464 Sum_probs=76.7
Q ss_pred ccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEE
Q 013270 196 AAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQC 274 (446)
Q Consensus 196 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v 274 (446)
......++|||+|||+.+++++|+++|++||.|..|+|++|+.+++++|||||+|.+.++|.+|++.|| ..|+|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999999 7799999999
Q ss_pred EEc
Q 013270 275 QKA 277 (446)
Q Consensus 275 ~~a 277 (446)
.||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 158
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=8.7e-18 Score=134.11 Aligned_cols=85 Identities=31% Similarity=0.510 Sum_probs=77.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||...+..|.|+.|.|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 45679999999999999999999999999999999999999999999999999999999999999445599999999998
Q ss_pred ccCCC
Q 013270 183 SVGPT 187 (446)
Q Consensus 183 ~~~~~ 187 (446)
.....
T Consensus 93 ~~~~~ 97 (105)
T 2dh8_A 93 TPRGM 97 (105)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 75543
No 159
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=1.2e-17 Score=133.58 Aligned_cols=86 Identities=26% Similarity=0.369 Sum_probs=78.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-c---cCccc
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-V---NNRMA 177 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~---~g~~i 177 (446)
.+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|+..+++. + .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456799999999999999999999999999999999999999999999999999999999999988764 5 88999
Q ss_pred eeeecccCCC
Q 013270 178 SCQLASVGPT 187 (446)
Q Consensus 178 ~v~~~~~~~~ 187 (446)
.|.++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999875443
No 160
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=143.20 Aligned_cols=79 Identities=23% Similarity=0.422 Sum_probs=74.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCC--CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSG--EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
..++|||+|||+++|+++|+++|+.|| .|.+|+|++|+.+|+++|||||+|.+.++|.+||..+++. |.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 9999999999999999999999999999999999998755 9999999998
Q ss_pred cc
Q 013270 182 AS 183 (446)
Q Consensus 182 ~~ 183 (446)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 161
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=134.90 Aligned_cols=82 Identities=16% Similarity=0.343 Sum_probs=74.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecC-CCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDI-TTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~-~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
....++|||+|||+.+++++|+++|+.|| |.+|+|++++ .+++++|||||+|.+.++|.+|+ .++ ..|+|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 56679999999999999999999999999 9999999998 68999999999999999999999 787 78999999999
Q ss_pred EcccCC
Q 013270 276 KAAEGK 281 (446)
Q Consensus 276 ~a~~~~ 281 (446)
++.++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 997654
No 162
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=130.80 Aligned_cols=82 Identities=23% Similarity=0.404 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeE-EEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEE-CKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+ |+|+++ .+|+++|||||+|.+.++|.+||...+..|.||.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 345799999999999999999999999999987 889888 699999999999999999999999955669999999998
Q ss_pred cccC
Q 013270 182 ASVG 185 (446)
Q Consensus 182 ~~~~ 185 (446)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 7643
No 163
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.2e-17 Score=138.26 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=77.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++||..+++. |.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999987654 999999999
Q ss_pred ecccC
Q 013270 181 LASVG 185 (446)
Q Consensus 181 ~~~~~ 185 (446)
++...
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 98643
No 164
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=133.66 Aligned_cols=86 Identities=19% Similarity=0.266 Sum_probs=78.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCC-eeEEEEe-ecCCCCCceeEEEEEeCCHHHHHHHHHhCC---CcccCeEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGE-IETGPIG-FDITTGKSRGFAIFVYKTVEGARKALEEPQ---KMFEGHQL 272 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~v~i~-~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~---~~~~Gr~l 272 (446)
....++|||+|||+.+|+++|+++|+.||. |.+|.|+ .|+.++.++|||||+|.+.++|.+|+..|+ ..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 888899999999999999999999999985 46999999
Q ss_pred EEEEcccCCCC
Q 013270 273 QCQKAAEGKNR 283 (446)
Q Consensus 273 ~v~~a~~~~~~ 283 (446)
+|.|+.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999877653
No 165
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=3.3e-17 Score=130.27 Aligned_cols=83 Identities=24% Similarity=0.320 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.|| |.+|+|++++.+++++|||||+|.+.++|.+|| .++ ..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34579999999999999999999999997 999999999999999999999999999999999 565 559999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 875443
No 166
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=1.9e-17 Score=136.38 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=78.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+|+++|+++|+.||.|.+|+|++|+.++.++|||||+|.+.++|.+|+ .++ ..|+|+.|+|.+
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999 777 789999999999
Q ss_pred cccCCC
Q 013270 277 AAEGKN 282 (446)
Q Consensus 277 a~~~~~ 282 (446)
+.+...
T Consensus 112 a~~~~~ 117 (124)
T 2jwn_A 112 KRTNMP 117 (124)
T ss_dssp SSCCCS
T ss_pred CCCCCC
Confidence 986544
No 167
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=5.4e-18 Score=127.29 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=68.6
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcc
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAA 278 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~ 278 (446)
....|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.|| ..+.||.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999965 59999999999999999999999 77999999999994
No 168
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=138.56 Aligned_cols=87 Identities=23% Similarity=0.339 Sum_probs=79.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||+.+++. |.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999988765 999999999
Q ss_pred ecccCCCC
Q 013270 181 LASVGPTG 188 (446)
Q Consensus 181 ~~~~~~~~ 188 (446)
++......
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 98765544
No 169
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=134.31 Aligned_cols=85 Identities=15% Similarity=0.257 Sum_probs=77.4
Q ss_pred ccCcceeecCCCCCcccHHHHH---HHhcccCCeeEEEEeecCCCC---CceeEEEEEeCCHHHHHHHHHhCC-CcccCe
Q 013270 198 AQGERKIYVSNVPRDVEKEKLR---GFFERFGEIETGPIGFDITTG---KSRGFAIFVYKTVEGARKALEEPQ-KMFEGH 270 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~V~~v~i~~d~~~g---~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr 270 (446)
....++|||+|||+.+++++|+ ++|++||.|.+|+|++|+.++ +++|||||+|.+.++|.+||+.|| ..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4567899999999999999999 999999999999999987654 566999999999999999999998 779999
Q ss_pred EEEEEEcccCCC
Q 013270 271 QLQCQKAAEGKN 282 (446)
Q Consensus 271 ~l~v~~a~~~~~ 282 (446)
.|+|.|+.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999988763
No 170
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=3.7e-18 Score=127.38 Aligned_cols=75 Identities=31% Similarity=0.506 Sum_probs=71.7
Q ss_pred eeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEc
Q 013270 203 KIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277 (446)
Q Consensus 203 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a 277 (446)
+|||+|||+.+++++|+++|++||.|.+|++++|+.++.++|||||+|.+.++|.+|+...+..++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999998668899999999985
No 171
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=1.9e-17 Score=127.90 Aligned_cols=79 Identities=25% Similarity=0.473 Sum_probs=73.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v~~~~ 183 (446)
+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|+ .++ ..+.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999999999889999999999999999999999 555 55999999999975
Q ss_pred c
Q 013270 184 V 184 (446)
Q Consensus 184 ~ 184 (446)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 172
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=131.78 Aligned_cols=81 Identities=20% Similarity=0.165 Sum_probs=71.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC---CcccCccce
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ---RKVNNRMAS 178 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~---~~~~g~~i~ 178 (446)
.....++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.++ ..|.|+.|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456899999999999999999999999999999999864 6899999999999999999653 459999999
Q ss_pred eeecccCCCC
Q 013270 179 CQLASVGPTG 188 (446)
Q Consensus 179 v~~~~~~~~~ 188 (446)
|.++......
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9998755443
No 173
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-18 Score=131.93 Aligned_cols=80 Identities=16% Similarity=0.317 Sum_probs=75.1
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
...++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..|| ..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 457899999999999999999999999999999999999999999999999999999999999998 7799999988776
Q ss_pred c
Q 013270 278 A 278 (446)
Q Consensus 278 ~ 278 (446)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 174
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=135.78 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=76.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCe-eEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEI-ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V-~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
....++|||+|||+.+|+++|+++|+.||.| ..|+|++|+ +++++|||||+|.+.++|.+||.. | ..|+||.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567899999999999999999999999999 899999997 999999999999999999999998 6 78999999999
Q ss_pred EcccCC
Q 013270 276 KAAEGK 281 (446)
Q Consensus 276 ~a~~~~ 281 (446)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 175
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=134.31 Aligned_cols=86 Identities=26% Similarity=0.334 Sum_probs=78.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCee--------EEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cc
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIE--------ECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KV 172 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~ 172 (446)
.....++|||+|||+++|+++|+++|+.||.|. .|+|++++.+++++|||||+|.+.++|.+||+.+++ .|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445689999999999999999999999999999 699999988999999999999999999999998765 49
Q ss_pred cCccceeeecccCCC
Q 013270 173 NNRMASCQLASVGPT 187 (446)
Q Consensus 173 ~g~~i~v~~~~~~~~ 187 (446)
.|+.|.|.++.....
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999875543
No 176
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=132.10 Aligned_cols=82 Identities=24% Similarity=0.498 Sum_probs=76.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeecccC
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASVG 185 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~~~ 185 (446)
.++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||...+..|.|+.|.|.++...
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999555699999999998755
Q ss_pred CC
Q 013270 186 PT 187 (446)
Q Consensus 186 ~~ 187 (446)
..
T Consensus 107 ~~ 108 (116)
T 1x4b_A 107 EE 108 (116)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 177
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.6e-18 Score=133.09 Aligned_cols=80 Identities=24% Similarity=0.440 Sum_probs=72.8
Q ss_pred ceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccC
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
++|||+|||+.+++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.+ |.+|+..+| ..++|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 999999998 7799999999999875
Q ss_pred CC
Q 013270 281 KN 282 (446)
Q Consensus 281 ~~ 282 (446)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 178
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=4.9e-18 Score=126.72 Aligned_cols=75 Identities=37% Similarity=0.583 Sum_probs=71.5
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
+|||+|||+++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|.+|+..++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999998777899999999864
No 179
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=129.62 Aligned_cols=83 Identities=22% Similarity=0.389 Sum_probs=75.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+|+++|+++|++||.| +++++ .+++++|||||+|.+.++|.+|+..|| ..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 5568999999999999999999999999987 56666 689999999999999999999999998 679999999999
Q ss_pred cccCCCCC
Q 013270 277 AAEGKNRT 284 (446)
Q Consensus 277 a~~~~~~~ 284 (446)
+.++....
T Consensus 88 a~~~~~~~ 95 (101)
T 2fc9_A 88 QGPRGSPN 95 (101)
T ss_dssp CSSCCCCC
T ss_pred cCCCCCCC
Confidence 98876543
No 180
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.5e-17 Score=132.67 Aligned_cols=82 Identities=22% Similarity=0.423 Sum_probs=76.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Ccc--------c
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMF--------E 268 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~--------~ 268 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++|+ ++.++|||||+|.+.++|.+|+..|| ..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999999999999999999999999999999997 99999999999999999999999998 667 6
Q ss_pred CeEEEEEEcccC
Q 013270 269 GHQLQCQKAAEG 280 (446)
Q Consensus 269 Gr~l~v~~a~~~ 280 (446)
+++|.|.|+.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 889999999854
No 181
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=130.46 Aligned_cols=82 Identities=22% Similarity=0.362 Sum_probs=74.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCC-CCccceEEEEEccHHHHHHHHHcCC-CcccCccceeee
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVT-GKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASCQL 181 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~-g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v~~ 181 (446)
...++|||+|||+++|+++|+++|+.|| |.+|+|++++.+ ++++|||||+|.+.++|.+|| .++ ..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4569999999999999999999999999 999999999887 999999999999999999999 665 559999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 875543
No 182
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=1.6e-17 Score=133.71 Aligned_cols=83 Identities=23% Similarity=0.368 Sum_probs=76.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|+..+++. |.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 446799999999999999999999999999999999999999999999999999999999999987654 9999999999
Q ss_pred cccC
Q 013270 182 ASVG 185 (446)
Q Consensus 182 ~~~~ 185 (446)
+...
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8644
No 183
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=135.77 Aligned_cols=89 Identities=28% Similarity=0.417 Sum_probs=77.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+|+++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|.+|+..|+ ..|+|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999665544444589999999999999999999999998 789999999999
Q ss_pred cccCCCCCCC
Q 013270 277 AAEGKNRTSS 286 (446)
Q Consensus 277 a~~~~~~~~~ 286 (446)
+.++..+...
T Consensus 102 a~~~~~~~~~ 111 (115)
T 2cpx_A 102 GKNKKQRSSG 111 (115)
T ss_dssp CCCCSCCCCC
T ss_pred ccCCCCCCCC
Confidence 9988765443
No 184
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=129.85 Aligned_cols=80 Identities=24% Similarity=0.367 Sum_probs=73.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~ 181 (446)
....++|||+|||+++++++|+++|+.||.|.+|+|++++. ++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34579999999999999999999999999999999999974 99999999999999999999997765 59999999998
Q ss_pred cc
Q 013270 182 AS 183 (446)
Q Consensus 182 ~~ 183 (446)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 185
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=129.25 Aligned_cols=84 Identities=23% Similarity=0.289 Sum_probs=76.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhcc-CCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-Cc-ccCcccee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGG-SGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RK-VNNRMASC 179 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~-~~g~~i~v 179 (446)
....++|||+|||+++|+++|+++|+. ||.|.+|+|++++ +++++|||||+|.+.++|.+||..++ .. +.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345799999999999999999999999 9999999999998 99999999999999999999999876 46 89999999
Q ss_pred eecccCCC
Q 013270 180 QLASVGPT 187 (446)
Q Consensus 180 ~~~~~~~~ 187 (446)
.++.....
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99865443
No 186
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=131.27 Aligned_cols=80 Identities=29% Similarity=0.525 Sum_probs=75.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
..++|||+|||+++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.+++. +.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 3689999999999999999999999999999999999989999999999999999999999987755 999999999986
Q ss_pred c
Q 013270 184 V 184 (446)
Q Consensus 184 ~ 184 (446)
.
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 187
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=5e-17 Score=133.79 Aligned_cols=85 Identities=22% Similarity=0.387 Sum_probs=79.2
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
.....++|||+|||+.+++++|+++|+.||.|..|+|++++ +++++|||||+|.+.++|.+|+..+| ..|+|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 35667899999999999999999999999999999999997 99999999999999999999999988 67999999999
Q ss_pred EcccCCC
Q 013270 276 KAAEGKN 282 (446)
Q Consensus 276 ~a~~~~~ 282 (446)
++.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987654
No 188
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=135.11 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=74.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCe-eEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEI-EECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.| .+|+|++|+ +|+++|||||+|.+.++|.+||...+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4467999999999999999999999999999 899999998 99999999999999999999999955569999999998
Q ss_pred ccc
Q 013270 182 ASV 184 (446)
Q Consensus 182 ~~~ 184 (446)
+..
T Consensus 91 a~~ 93 (114)
T 2cpy_A 91 VTL 93 (114)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 189
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=130.70 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=75.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~ 181 (446)
....++|||+|||+++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|++||..+++ .|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999998875 49999999999
Q ss_pred ccc
Q 013270 182 ASV 184 (446)
Q Consensus 182 ~~~ 184 (446)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 763
No 190
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=127.45 Aligned_cols=80 Identities=19% Similarity=0.401 Sum_probs=73.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCC-ccceEEEEEccHHHHHHHHHcCCC-cccCccceeeec
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGK-AKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLA 182 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~-~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~ 182 (446)
..++|||+|||+++|+++|+++|+.||.|.+|+|++++.++. ++|||||+|.+.++|.+|+..+++ .+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 999999999999999999998765 499999999998
Q ss_pred cc
Q 013270 183 SV 184 (446)
Q Consensus 183 ~~ 184 (446)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 191
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=137.03 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=75.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+|+++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||. +| ..|+||.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4566899999999999999999999999999997777777899999999999999999999999 77 789999999999
Q ss_pred cccC
Q 013270 277 AAEG 280 (446)
Q Consensus 277 a~~~ 280 (446)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9654
No 192
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=2.2e-17 Score=134.53 Aligned_cols=81 Identities=11% Similarity=0.172 Sum_probs=74.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCC---eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGE---IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~ 273 (446)
....++|||+|||+++|+++|+++|+.||. |..|+|++|+. |+++|||||+|.+.++|.+||. +| ..|+||.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999999999999999999999999 89999999976 9999999999999999999999 67 779999999
Q ss_pred EEEcccC
Q 013270 274 CQKAAEG 280 (446)
Q Consensus 274 v~~a~~~ 280 (446)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998644
No 193
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.5e-17 Score=128.14 Aligned_cols=86 Identities=19% Similarity=0.353 Sum_probs=76.0
Q ss_pred cCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCcccee
Q 013270 101 DRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASC 179 (446)
Q Consensus 101 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v 179 (446)
......++|||+|||+++|+++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|.+|+..+++ .|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3345679999999999999999999999999999999999863 4899999999999999999998765 499999999
Q ss_pred eecccCCCC
Q 013270 180 QLASVGPTG 188 (446)
Q Consensus 180 ~~~~~~~~~ 188 (446)
.++......
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 998765443
No 194
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.3e-17 Score=130.51 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=73.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~~ 183 (446)
..++|||+|||+++|+++|+++|+.||.|..+++++++.+++++|||||+|.+.++|++||+.+++ .|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 468999999999999999999999999999999999999999999999999999999999998765 5999999999864
No 195
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=125.65 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=74.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.| .|.+|+|+++ .+|+++|||||+|.+.++|.+||. +++. |.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4467999999999999999999999999 9999999999 789999999999999999999999 7655 9999999999
Q ss_pred cccC
Q 013270 182 ASVG 185 (446)
Q Consensus 182 ~~~~ 185 (446)
+...
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8654
No 196
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.7e-17 Score=127.84 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=76.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.| ..|++++++.+++++|||||+|.+.++|.+||..|| ..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 5677999999999999999999999977 367888898899999999999999999999999988 789999999999
Q ss_pred cccCCCCC
Q 013270 277 AAEGKNRT 284 (446)
Q Consensus 277 a~~~~~~~ 284 (446)
+.++..+.
T Consensus 89 a~~~~~~~ 96 (102)
T 2fc8_A 89 AKPKGEGG 96 (102)
T ss_dssp CCCCCSSS
T ss_pred ecCCCCCC
Confidence 98876653
No 197
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=5.4e-17 Score=126.13 Aligned_cols=81 Identities=22% Similarity=0.364 Sum_probs=73.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~~ 182 (446)
...++|||+|||+++++++|+++|+.||.|.+|+|+++ +++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999999984 789999999999999999999998765 499999999998
Q ss_pred ccCC
Q 013270 183 SVGP 186 (446)
Q Consensus 183 ~~~~ 186 (446)
....
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 6543
No 198
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.9e-17 Score=130.23 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=75.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|.+||..+++ .|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4457999999999999999999999999999999999997 699999999999999999999998765 49999999999
Q ss_pred cccC
Q 013270 182 ASVG 185 (446)
Q Consensus 182 ~~~~ 185 (446)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8643
No 199
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.4e-17 Score=130.40 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=77.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCC-eeEEEEE-eeCCCCCccceEEEEEccHHHHHHHHHcCC---CcccCccc
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGE-IEECKLV-IDKVTGKAKGFAFIVFKTRKAAVKALKNPQ---RKVNNRMA 177 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~-~~~~~g~~~G~afV~f~~~~~A~~Al~~~~---~~~~g~~i 177 (446)
....++|||+|||+++|+++|+++|+.||. |.+|.|+ +++.+++++|||||+|.+.++|.+|+..++ ..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345799999999999999999999999998 9999998 888889999999999999999999999984 35999999
Q ss_pred eeeecccCCC
Q 013270 178 SCQLASVGPT 187 (446)
Q Consensus 178 ~v~~~~~~~~ 187 (446)
.|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999875543
No 200
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=130.64 Aligned_cols=80 Identities=24% Similarity=0.374 Sum_probs=71.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeC-CCCCccceEEEEEccHHHHHHHHHcCC-CcccCccceee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDK-VTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASCQ 180 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v~ 180 (446)
....++|||+|||+++|+++|+++|+.|| |.+|+|++++ .+|+++|||||+|.+.++|.+|| .++ ..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44579999999999999999999999999 9999999998 68999999999999999999999 565 55999999999
Q ss_pred eccc
Q 013270 181 LASV 184 (446)
Q Consensus 181 ~~~~ 184 (446)
++..
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 9763
No 201
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=137.49 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=75.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeE--EEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-----cccCcc
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEE--CKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-----KVNNRM 176 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-----~~~g~~ 176 (446)
...++|||+|||+++|+++|+++|+.||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..+++ .+.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999976 99999999999999999999999 99999999875 699999
Q ss_pred ceeeecccC
Q 013270 177 ASCQLASVG 185 (446)
Q Consensus 177 i~v~~~~~~ 185 (446)
|.|.++...
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999998654
No 202
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=6.4e-18 Score=133.88 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=76.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+|+++|+++|+.||.|.. .++++..+++++|||||+|.+.++|.+||+ || ..|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999999988 777887889999999999999999999999 87 789999999999
Q ss_pred cccCCCC
Q 013270 277 AAEGKNR 283 (446)
Q Consensus 277 a~~~~~~ 283 (446)
+.++..+
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9877654
No 203
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=132.35 Aligned_cols=83 Identities=25% Similarity=0.449 Sum_probs=76.2
Q ss_pred ccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEE
Q 013270 196 AAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQC 274 (446)
Q Consensus 196 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v 274 (446)
......++|||+|||+.+++++|+++|++||.|.+|+|++|+ +.++|||||+|.+.++|.+|+..++ ..|+|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 335678999999999999999999999999999999999984 4589999999999999999999988 7799999999
Q ss_pred EEcccC
Q 013270 275 QKAAEG 280 (446)
Q Consensus 275 ~~a~~~ 280 (446)
.++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999765
No 204
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=6.7e-17 Score=138.67 Aligned_cols=85 Identities=22% Similarity=0.351 Sum_probs=78.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||..++.. |.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3446799999999999999999999999999999999999999999999999999999999999987654 999999999
Q ss_pred ecccCC
Q 013270 181 LASVGP 186 (446)
Q Consensus 181 ~~~~~~ 186 (446)
++....
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 997543
No 205
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=2.6e-17 Score=150.06 Aligned_cols=79 Identities=22% Similarity=0.386 Sum_probs=73.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCC--CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSG--EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
..++|||+|||+++|+++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|.+||+.++.. |.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 9999999999999999999999999999999999988754 9999999998
Q ss_pred cc
Q 013270 182 AS 183 (446)
Q Consensus 182 ~~ 183 (446)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 206
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=4.1e-17 Score=130.67 Aligned_cols=80 Identities=21% Similarity=0.373 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|.+|+..+++ .|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4467999999999999999999999999999999999998 999999999999999999999998765 49999999998
Q ss_pred cc
Q 013270 182 AS 183 (446)
Q Consensus 182 ~~ 183 (446)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 207
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=130.80 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=71.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+++|++||+++|+.| .|.+|+|++|+. |+++|||||+|.+.++|.+|| .+| ..|+||.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3446899999999999999999999999 899999999965 999999999999999999999 466 789999999998
Q ss_pred ccc
Q 013270 277 AAE 279 (446)
Q Consensus 277 a~~ 279 (446)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 854
No 208
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=125.38 Aligned_cols=79 Identities=16% Similarity=0.432 Sum_probs=72.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+++++++|+++|++||.|.+|+|+ +|||||+|.+.++|.+|+..+| ..|+|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999997 6899999999999999999998 679999999999
Q ss_pred cccCCCCC
Q 013270 277 AAEGKNRT 284 (446)
Q Consensus 277 a~~~~~~~ 284 (446)
+.++..+.
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98876653
No 209
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=4e-17 Score=134.80 Aligned_cols=87 Identities=26% Similarity=0.386 Sum_probs=78.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|.+||+.+++ .|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 344578999999999999999999999999999999999998999999999999999999999997765 5999999999
Q ss_pred ecccCCCC
Q 013270 181 LASVGPTG 188 (446)
Q Consensus 181 ~~~~~~~~ 188 (446)
++......
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 98755443
No 210
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=3.3e-17 Score=136.31 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=72.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCC---eeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCccce
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGE---IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMAS 178 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~ 178 (446)
....++|||+|||+++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+ ++ ..|.||.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345799999999999999999999999999 89999999986 9999999999999999999999 65 459999999
Q ss_pred eeecc
Q 013270 179 CQLAS 183 (446)
Q Consensus 179 v~~~~ 183 (446)
|.++.
T Consensus 119 V~~a~ 123 (136)
T 2hgl_A 119 VFKSH 123 (136)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98864
No 211
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=1.1e-17 Score=129.48 Aligned_cols=79 Identities=25% Similarity=0.389 Sum_probs=72.0
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecccC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLASVG 185 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~~~ 185 (446)
++|||+|||.++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.+ |.+|+..+++. +.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999998755 99999999998654
Q ss_pred C
Q 013270 186 P 186 (446)
Q Consensus 186 ~ 186 (446)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 212
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-17 Score=135.68 Aligned_cols=79 Identities=16% Similarity=0.308 Sum_probs=73.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCccceeeecc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASCQLAS 183 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v~~~~ 183 (446)
..++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|| .++ ..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3699999999999999999999999999999999999989999999999999999999999 655 55999999999875
Q ss_pred c
Q 013270 184 V 184 (446)
Q Consensus 184 ~ 184 (446)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 213
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=9.4e-17 Score=128.74 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=74.5
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccC-----eE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEG-----HQ 271 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~G-----r~ 271 (446)
....++|||+|||+++|+++|+++|++||.|..|+|++| |||||+|.+.++|.+||+.|| ..|+| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 445789999999999999999999999999999999876 899999999999999999998 67999 99
Q ss_pred EEEEEcccCCCCCCC
Q 013270 272 LQCQKAAEGKNRTSS 286 (446)
Q Consensus 272 l~v~~a~~~~~~~~~ 286 (446)
|+|.++.++......
T Consensus 85 i~V~~a~~~~~~~~r 99 (108)
T 1x4c_A 85 IRVKVDGPRSPSYGR 99 (108)
T ss_dssp EEEEESSCCSCCCCC
T ss_pred EEEEeCCCCCCCCCC
Confidence 999999987655443
No 214
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=3.5e-17 Score=133.94 Aligned_cols=79 Identities=28% Similarity=0.419 Sum_probs=72.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCee--EEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIE--ECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQ 180 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~--~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~ 180 (446)
....++|||+|||+++|+++|+++|+.| .|. +|+|++|+. |+++|||||+|.+.++|++||+.++..|.||.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 3457899999999999999999999999 677 999999986 999999999999999999999988877999999998
Q ss_pred ecc
Q 013270 181 LAS 183 (446)
Q Consensus 181 ~~~ 183 (446)
.+.
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 864
No 215
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-17 Score=127.59 Aligned_cols=81 Identities=27% Similarity=0.409 Sum_probs=74.2
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|++||.|..|+++++ +|||||+|.+.++|.+|++.|+ ..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 556789999999999999999999999999999999865 8999999999999999999998 779999999999
Q ss_pred cccCCCCC
Q 013270 277 AAEGKNRT 284 (446)
Q Consensus 277 a~~~~~~~ 284 (446)
+.++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2cpj_A 86 ACHSASLT 93 (99)
T ss_dssp SSCCSCCC
T ss_pred cCCCCCCC
Confidence 98866543
No 216
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=7.9e-17 Score=132.63 Aligned_cols=80 Identities=23% Similarity=0.429 Sum_probs=74.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCccceeeeccc
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASCQLASV 184 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v~~~~~ 184 (446)
.++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|| .++ ..|.|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999989999999999999999999999 565 559999999999864
Q ss_pred CC
Q 013270 185 GP 186 (446)
Q Consensus 185 ~~ 186 (446)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 217
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=3.5e-17 Score=130.50 Aligned_cols=82 Identities=20% Similarity=0.306 Sum_probs=74.7
Q ss_pred ccCcceeecCCCCCcc------cHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCe
Q 013270 198 AQGERKIYVSNVPRDV------EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGH 270 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~------te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr 270 (446)
....++|||+|||+.+ |+++|+++|++||.|.+|+|+ +.+|+++|||||+|.+.++|.+|+..|| ..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4446899999999999 889999999999999999998 3689999999999999999999999998 679998
Q ss_pred -EEEEEEcccCC
Q 013270 271 -QLQCQKAAEGK 281 (446)
Q Consensus 271 -~l~v~~a~~~~ 281 (446)
.|+|.++....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999997654
No 218
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.1e-17 Score=128.30 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=74.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|.+|+..+++. |.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 345679999999999999999999999999999999999853 37899999999999999999977655 999999999
Q ss_pred ecccCC
Q 013270 181 LASVGP 186 (446)
Q Consensus 181 ~~~~~~ 186 (446)
++....
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 987544
No 219
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=3.3e-17 Score=136.77 Aligned_cols=84 Identities=23% Similarity=0.399 Sum_probs=77.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++||..+++. |.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999999989999999999999999999999988755 99999999998
Q ss_pred ccCCC
Q 013270 183 SVGPT 187 (446)
Q Consensus 183 ~~~~~ 187 (446)
.....
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75543
No 220
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=1.3e-17 Score=136.61 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=74.3
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCee--EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIE--TGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQ 275 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~--~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~ 275 (446)
....++|||+|||+++|+++|+++|+.| .|. +|+|++|+. |+++|||||+|.+.++|.+||+.++..|+||.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 4557889999999999999999999999 677 899999976 999999999999999999999986688999999999
Q ss_pred EcccCC
Q 013270 276 KAAEGK 281 (446)
Q Consensus 276 ~a~~~~ 281 (446)
++..++
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986543
No 221
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-17 Score=129.95 Aligned_cols=81 Identities=21% Similarity=0.392 Sum_probs=74.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|+++ +|||||+|.+.++|.+|+..|+ ..|+|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999999877 8999999999999999999988 789999999999
Q ss_pred cccCCCCC
Q 013270 277 AAEGKNRT 284 (446)
Q Consensus 277 a~~~~~~~ 284 (446)
+.++....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 98876543
No 222
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=4.3e-17 Score=132.83 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=72.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCC---eeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceee
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGE---IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQ 180 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~ 180 (446)
...++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|++||+..+..|.||.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45799999999999999999999999999 89999999975 999999999999999999999954455999999998
Q ss_pred ecc
Q 013270 181 LAS 183 (446)
Q Consensus 181 ~~~ 183 (446)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 874
No 223
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=1.2e-16 Score=131.63 Aligned_cols=84 Identities=21% Similarity=0.339 Sum_probs=76.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++++++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999999998 9999999999999999999999987655 9999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 875443
No 224
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=5.5e-17 Score=133.36 Aligned_cols=82 Identities=23% Similarity=0.329 Sum_probs=73.4
Q ss_pred ccCcceeecCCCCCcccHHHHH----HHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLR----GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQL 272 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l 272 (446)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|..|+..|| ..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4557899999999999999876 6999999999988753 68899999999999999999999999 77999999
Q ss_pred EEEEcccCCC
Q 013270 273 QCQKAAEGKN 282 (446)
Q Consensus 273 ~v~~a~~~~~ 282 (446)
+|.|+..+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987653
No 225
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=132.64 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=75.2
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCC---eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGE---IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~ 273 (446)
....++|||+|||+++|+++|+++|+.||. |..|+|++|+. |+++|||||+|.+.++|.+||. ++ ..|+||.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 556789999999999999999999999998 99999999976 9999999999999999999999 67 789999999
Q ss_pred EEEcccC
Q 013270 274 CQKAAEG 280 (446)
Q Consensus 274 v~~a~~~ 280 (446)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998654
No 226
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=1.1e-16 Score=128.76 Aligned_cols=97 Identities=19% Similarity=0.359 Sum_probs=79.1
Q ss_pred ccCccceeeecccCCCCCCCccCcccccCcceeecCCCCCc-ccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEe
Q 013270 172 VNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRD-VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVY 250 (446)
Q Consensus 172 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F 250 (446)
..|..|.+..+...... ......++|||+|||+. +++++|+++|++||.|..|+| ++|||||+|
T Consensus 5 ~~g~~~~~~~s~~~~~~-------~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f 69 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKN-------DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQY 69 (110)
T ss_dssp CCSCCCCCCCCCSCCSC-------CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEEC
T ss_pred CCCcccccccCCCCCCC-------CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEE
Confidence 45566666554322211 12345689999999999 999999999999999999998 489999999
Q ss_pred CCHHHHHHHHHhCC-CcccCeEEEEEEcccCCCC
Q 013270 251 KTVEGARKALEEPQ-KMFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 251 ~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~~~~ 283 (446)
.+.++|.+|+..|+ ..|+|+.|+|.|+......
T Consensus 70 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 70 SNERHARAAVLGENGRVLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp SSSHHHHHHHHHHTTCEETTEECCEEESCCCCSC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 99999999999998 7899999999999865543
No 227
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=125.53 Aligned_cols=79 Identities=22% Similarity=0.307 Sum_probs=72.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Cccc--CeEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFE--GHQLQC 274 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~--Gr~l~v 274 (446)
..+.++|||+|||+.+|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|+..|| ..|+ |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999999765 7899999999999999999998 7788 999999
Q ss_pred EEcccCCC
Q 013270 275 QKAAEGKN 282 (446)
Q Consensus 275 ~~a~~~~~ 282 (446)
.|+.++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 228
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=5.3e-17 Score=123.00 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=65.9
Q ss_pred CCeEEEeCCCCCC------CHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCc-cc
Q 013270 106 QRKIFVHGLGWDT------TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNR-MA 177 (446)
Q Consensus 106 ~~~l~V~nLp~~~------te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~-~i 177 (446)
+++|||+|||+++ |+++|+++|++||.|.+|+|+ +.+|+++|||||+|.+.++|.+|+..+++. +.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 779999999999999999987 358999999999999999999999998765 9999 88
Q ss_pred ee
Q 013270 178 SC 179 (446)
Q Consensus 178 ~v 179 (446)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 229
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=130.48 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=72.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCC---eeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCcccee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGE---IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASC 179 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v 179 (446)
....++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|.+||...+..+.||.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 446799999999999999999999999998 99999999986 99999999999999999999994445599999999
Q ss_pred eecc
Q 013270 180 QLAS 183 (446)
Q Consensus 180 ~~~~ 183 (446)
.++.
T Consensus 87 ~~a~ 90 (107)
T 2lmi_A 87 YEIN 90 (107)
T ss_dssp EECC
T ss_pred EECC
Confidence 9875
No 230
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.8e-17 Score=130.52 Aligned_cols=80 Identities=20% Similarity=0.168 Sum_probs=71.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC---CcccCcccee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ---RKVNNRMASC 179 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~---~~~~g~~i~v 179 (446)
....++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.++ ..|.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 446799999999999999999999999999999999865 6899999999999999999875 3599999999
Q ss_pred eecccCCCC
Q 013270 180 QLASVGPTG 188 (446)
Q Consensus 180 ~~~~~~~~~ 188 (446)
.++......
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 998755443
No 231
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.1e-17 Score=133.28 Aligned_cols=79 Identities=24% Similarity=0.342 Sum_probs=71.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCe----eEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCcccee
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEI----EECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASC 179 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v----~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v 179 (446)
...++|||+|||+++|+++|+++|+.||.| .+|+|++|+ +|+++|||||+|.+.++|.+||+.++..|.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 357999999999999999999999999875 699999994 899999999999999999999998666699999998
Q ss_pred eecc
Q 013270 180 QLAS 183 (446)
Q Consensus 180 ~~~~ 183 (446)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8763
No 232
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=3.3e-17 Score=122.99 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=67.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
..+..|||+||++.+|+++|+++|.+||+|.+|++.. +||||||+|.++++|.+|++.+|.. +.||.|+|+.+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3578999999999999999999999999999999964 6899999999999999999999765 99999999975
No 233
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-17 Score=124.51 Aligned_cols=73 Identities=22% Similarity=0.396 Sum_probs=67.1
Q ss_pred cceeecCCCCCcc------cHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCe-EE
Q 013270 201 ERKIYVSNVPRDV------EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGH-QL 272 (446)
Q Consensus 201 ~~~l~V~nLp~~~------te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr-~l 272 (446)
.++|||+|||+.+ ++++|+++|++||.|.+|+|+ +.+|+++|||||+|.+.++|.+|+..|| ..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 3689999999999999999999999998 779999 88
Q ss_pred EEE
Q 013270 273 QCQ 275 (446)
Q Consensus 273 ~v~ 275 (446)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 234
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.6e-17 Score=134.02 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeecc
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~ 183 (446)
...++|||+|||+++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|.+||...+..|.|+.|.|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 35699999999999999999999999999999777777789999999999999999999999933455999999999875
No 235
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.7e-17 Score=127.09 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=72.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHH----HhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccce
Q 013270 104 VSQRKIFVHGLGWDTTQESLL----SAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMAS 178 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~ 178 (446)
.+.++|||+|||+++++++|+ ++|++||.|.+|+|++++.+ +|||||+|.+.++|.+|++.+++. +.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999998754 899999999999999999988765 9999999
Q ss_pred eeecccC
Q 013270 179 CQLASVG 185 (446)
Q Consensus 179 v~~~~~~ 185 (446)
|.++...
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9998644
No 236
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=9.3e-17 Score=138.09 Aligned_cols=85 Identities=22% Similarity=0.383 Sum_probs=78.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++|+.+|+++|||||+|.+.++|.+||..+++. |.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999999989999999999999999999999988755 9999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 875433
No 237
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4e-17 Score=133.36 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=73.4
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCe----eEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEE
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEI----ETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V----~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v 274 (446)
...++|||+|||+++|++||+++|+.||.| ..|+|++| .+|+++|||||+|.+.++|.+||+..+..|+||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 456899999999999999999999999975 68999999 5899999999999999999999998447899999999
Q ss_pred EEcccC
Q 013270 275 QKAAEG 280 (446)
Q Consensus 275 ~~a~~~ 280 (446)
..+.++
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998543
No 238
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2.7e-18 Score=139.74 Aligned_cols=86 Identities=23% Similarity=0.342 Sum_probs=80.2
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeE--------EEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Cccc
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIET--------GPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFE 268 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~ 268 (446)
....++|||+|||+.+++++|+++|+.||.|.. |+|++|+.+++++|||||+|.+.++|.+|+..|| ..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999999 9999998899999999999999999999999998 7899
Q ss_pred CeEEEEEEcccCCCC
Q 013270 269 GHQLQCQKAAEGKNR 283 (446)
Q Consensus 269 Gr~l~v~~a~~~~~~ 283 (446)
|+.|+|.++.++..+
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999877654
No 239
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.9e-17 Score=130.59 Aligned_cols=85 Identities=20% Similarity=0.306 Sum_probs=75.8
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHH---HhhccCCCeeEEEEEeeCCCC---CccceEEEEEccHHHHHHHHHcCCCc-ccC
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLL---SAFGGSGEIEECKLVIDKVTG---KAKGFAFIVFKTRKAAVKALKNPQRK-VNN 174 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~v~~v~i~~~~~~g---~~~G~afV~f~~~~~A~~Al~~~~~~-~~g 174 (446)
+....++|||+|||+++++++|+ ++|++||.|.+|+|++++.++ +++|||||+|.+.++|++||+.+++. |.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34467899999999999999999 999999999999999987654 56699999999999999999997655 999
Q ss_pred ccceeeecccCC
Q 013270 175 RMASCQLASVGP 186 (446)
Q Consensus 175 ~~i~v~~~~~~~ 186 (446)
+.|.|.++....
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999987554
No 240
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=121.98 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=70.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC-C-CcccCeEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP-Q-KMFEGHQLQCQ 275 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~-~-~~~~Gr~l~v~ 275 (446)
....++|||+|||+.+++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|+..| + ..++|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 566789999999999999999999999999999999875 899999999999999999988 7 77999999999
Q ss_pred Ecc
Q 013270 276 KAA 278 (446)
Q Consensus 276 ~a~ 278 (446)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 241
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=7.3e-17 Score=127.72 Aligned_cols=78 Identities=23% Similarity=0.360 Sum_probs=72.7
Q ss_pred ceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcccC
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAEG 280 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~~ 280 (446)
++|||+|||+.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|+..|+ ..|+|+.|+|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999877 69999999999999999999988 7899999999999887
Q ss_pred CCCC
Q 013270 281 KNRT 284 (446)
Q Consensus 281 ~~~~ 284 (446)
..+.
T Consensus 76 ~~~~ 79 (101)
T 2hvz_A 76 PRRS 79 (101)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7543
No 242
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=5.5e-17 Score=130.00 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=70.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFG-EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
....++|||+|||+.+++++|+++|++|| .|..+.|+.+ .++|||||+|.+.++|.+||+.|| ..|+||.|+|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44568999999999999999999999999 9999988533 479999999999999999999999 67999999999
Q ss_pred EcccC
Q 013270 276 KAAEG 280 (446)
Q Consensus 276 ~a~~~ 280 (446)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98754
No 243
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=122.88 Aligned_cols=79 Identities=20% Similarity=0.335 Sum_probs=72.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|+|++ +||||+|.+.++|.+|+..|| ..|+|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 56679999999999999999999999999999999973 499999999999999999998 779999999999
Q ss_pred cccCCCCC
Q 013270 277 AAEGKNRT 284 (446)
Q Consensus 277 a~~~~~~~ 284 (446)
+.++....
T Consensus 79 a~~~~~~~ 86 (92)
T 2dgt_A 79 STSRLRTA 86 (92)
T ss_dssp SSCCCSCC
T ss_pred ccCCCCCC
Confidence 98876543
No 244
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7.1e-17 Score=129.05 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=69.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeecc
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~ 183 (446)
.++|||+|||+++|+++|+++|+.| .|.+|+|++|+ +|+++|||||+|.+.++|.+||...+..|.||.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4799999999999999999999999 89999999997 4999999999999999999999655566999999998764
No 245
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=124.74 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=69.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc---ccCccce
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK---VNNRMAS 178 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~---~~g~~i~ 178 (446)
....+++|||+|||.++|+++|+++|++||.|.+|+|++ .||||||+|.+.++|.+|++.++.. +.|+.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345689999999999999999999999999999999974 4689999999999999999988643 7899999
Q ss_pred eeeccc
Q 013270 179 CQLASV 184 (446)
Q Consensus 179 v~~~~~ 184 (446)
|.++..
T Consensus 91 V~~S~~ 96 (100)
T 3r27_A 91 VNYSTS 96 (100)
T ss_dssp EEECSC
T ss_pred EEeccc
Confidence 999864
No 246
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=127.89 Aligned_cols=80 Identities=11% Similarity=0.322 Sum_probs=72.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-c--------c
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-V--------N 173 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~--------~ 173 (446)
+...++|||+|||+++|+++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|.+||..+++. + .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4467999999999999999999999999999999999998 9999999999999999999999987655 6 4
Q ss_pred Cccceeeecc
Q 013270 174 NRMASCQLAS 183 (446)
Q Consensus 174 g~~i~v~~~~ 183 (446)
++.|.|.++.
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 6777777764
No 247
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=124.86 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=72.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|. ++++.+ +++|||||+|.+.++|.+|+..|| ..|+|+.|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45578999999999999999999999999997 677654 679999999999999999999998 789999999999
Q ss_pred cccCCC
Q 013270 277 AAEGKN 282 (446)
Q Consensus 277 a~~~~~ 282 (446)
+.++..
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987653
No 248
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=5.8e-17 Score=128.56 Aligned_cols=84 Identities=24% Similarity=0.421 Sum_probs=76.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEc
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a 277 (446)
....++|||+|||+.+++++|+++|+.||.|.+|+|++|+ +++++|||||+|.+.++|.+|+. ....|+|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 4567899999999999999999999999999999999997 99999999999999999999999 447899999999999
Q ss_pred ccCCCC
Q 013270 278 AEGKNR 283 (446)
Q Consensus 278 ~~~~~~ 283 (446)
..+...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 876543
No 249
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=124.21 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=69.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC---CcccCcccee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ---RKVNNRMASC 179 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~---~~~~g~~i~v 179 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|+++ ||||||+|.+.++|.+|++.++ ..+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346799999999999999999999999999999998754 7899999999999999999763 4599999999
Q ss_pred eecccCCC
Q 013270 180 QLASVGPT 187 (446)
Q Consensus 180 ~~~~~~~~ 187 (446)
.++.....
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99875443
No 250
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=123.78 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=71.7
Q ss_pred cccCcceeecCCCCCcccHHHHHHHhccc--CCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEE
Q 013270 197 AAQGERKIYVSNVPRDVEKEKLRGFFERF--GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQ 273 (446)
Q Consensus 197 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~ 273 (446)
.....++|||+|||+.+|+++|+++|+.| |.|..|+++ +|||||+|.+.++|.+|+..|| ..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 35667999999999999999999999999 999998874 6799999999999999999998 779999999
Q ss_pred EEEcccCCCC
Q 013270 274 CQKAAEGKNR 283 (446)
Q Consensus 274 v~~a~~~~~~ 283 (446)
|.|+.++...
T Consensus 83 v~~a~~~~~~ 92 (99)
T 2cpd_A 83 VTLAKPVDKD 92 (99)
T ss_dssp EECCCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999887654
No 251
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.8e-17 Score=129.10 Aligned_cols=83 Identities=19% Similarity=0.394 Sum_probs=74.5
Q ss_pred ccCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccce
Q 013270 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMAS 178 (446)
Q Consensus 100 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~ 178 (446)
.......++|||+|||.++|+++|+++|+.||.|.+|+|++++ +.++|||||+|.+.++|++|+..+++. +.|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445578999999999999999999999999999999999985 458999999999999999999987654 9999999
Q ss_pred eeeccc
Q 013270 179 CQLASV 184 (446)
Q Consensus 179 v~~~~~ 184 (446)
|.++..
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999764
No 252
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=134.67 Aligned_cols=80 Identities=29% Similarity=0.454 Sum_probs=74.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||.++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++. |.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 446799999999999999999999999999999999999999999999999999999999999988765 9999999987
Q ss_pred c
Q 013270 182 A 182 (446)
Q Consensus 182 ~ 182 (446)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 253
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=8.5e-17 Score=128.90 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=70.6
Q ss_pred ceeecCCC----CCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCC----HHH----HHHHHH--hCC-Cc
Q 013270 202 RKIYVSNV----PRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKT----VEG----ARKALE--EPQ-KM 266 (446)
Q Consensus 202 ~~l~V~nL----p~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~----~~~----A~~Ai~--~~~-~~ 266 (446)
++|||+|| |+.+++++|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888988 677 67
Q ss_pred ccCeEEEEEEcccC
Q 013270 267 FEGHQLQCQKAAEG 280 (446)
Q Consensus 267 ~~Gr~l~v~~a~~~ 280 (446)
|+||.|+|.+-+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999986543
No 254
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=126.39 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=72.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|.. +++++|||||+|.+.++|.+||+.++. .|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 44579999999999999999999999999999999964 456899999999999999999988765 49999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 875543
No 255
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=124.81 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=69.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC---CcccCcccee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ---RKVNNRMASC 179 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~---~~~~g~~i~v 179 (446)
....++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.++ ..+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345799999999999999999999999999999998753 6899999999999999999764 3489999999
Q ss_pred eecccCCC
Q 013270 180 QLASVGPT 187 (446)
Q Consensus 180 ~~~~~~~~ 187 (446)
.++.....
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99875543
No 256
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=1.5e-16 Score=127.35 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=71.7
Q ss_pred ccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEE
Q 013270 196 AAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQC 274 (446)
Q Consensus 196 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v 274 (446)
......++|||+|||+.+|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+|+..|| ..|+|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 335678999999999999999999999999999999997 7899999999999999999988 7799999999
Q ss_pred EEcccCCCC
Q 013270 275 QKAAEGKNR 283 (446)
Q Consensus 275 ~~a~~~~~~ 283 (446)
.|+.++..+
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 999876553
No 257
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=125.91 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=68.5
Q ss_pred CCCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC---cccCcccee
Q 013270 104 VSQRKIFVHGLGW-DTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR---KVNNRMASC 179 (446)
Q Consensus 104 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~---~~~g~~i~v 179 (446)
...++|||+|||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.++. .|.|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3679999999999 9999999999999999999999865 47999999999999999998752 489999999
Q ss_pred eecccC
Q 013270 180 QLASVG 185 (446)
Q Consensus 180 ~~~~~~ 185 (446)
.++...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998743
No 258
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=6.7e-17 Score=134.87 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=71.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeecc
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLAS 183 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~ 183 (446)
...++|||+|||+++|+++|+++|+.|| |.+|+|++|+. ++++|||||+|.+.++|++||...+..|.||.|.|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 77999999975 999999999999999999999554556999999999876
Q ss_pred cC
Q 013270 184 VG 185 (446)
Q Consensus 184 ~~ 185 (446)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 259
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=9.8e-17 Score=127.91 Aligned_cols=79 Identities=22% Similarity=0.284 Sum_probs=71.9
Q ss_pred CCCCCeEEEeCCCCCC------CHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCc
Q 013270 103 DVSQRKIFVHGLGWDT------TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNR 175 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~------te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~ 175 (446)
....++|||+|||+++ |+++|+++|++||.|.+|+|+ +.+|+++|||||+|.+.++|.+|+..+++. |.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3457899999999999 789999999999999999998 358999999999999999999999998765 9998
Q ss_pred -cceeeecc
Q 013270 176 -MASCQLAS 183 (446)
Q Consensus 176 -~i~v~~~~ 183 (446)
.|.|.++.
T Consensus 90 ~~l~V~~a~ 98 (105)
T 2nlw_A 90 HTFRVNLFT 98 (105)
T ss_dssp CEEEEECSC
T ss_pred ceEEEEEcc
Confidence 99999875
No 260
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-16 Score=130.06 Aligned_cols=85 Identities=19% Similarity=0.278 Sum_probs=72.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|..|.+..+..+++++|||||+|.+.++|.+||..+++. |.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346799999999999999999999999999955443333348899999999999999999999987655 9999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 875544
No 261
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=4.8e-16 Score=137.84 Aligned_cols=122 Identities=16% Similarity=0.284 Sum_probs=95.4
Q ss_pred cHHHHHHHHHcC--CC-cccCccceeeecccCCCCCCCccCcccccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEE
Q 013270 157 TRKAAVKALKNP--QR-KVNNRMASCQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPI 233 (446)
Q Consensus 157 ~~~~A~~Al~~~--~~-~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i 233 (446)
+.+.+..|+... .. .+.+....|......+... ...........++|||+|||+.+|+++|+++|++||.|..|+|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~-~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPE-VTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCC-CCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcc-cchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE
Confidence 567888888877 33 3666666666552211111 0000012345689999999999999999999999999999999
Q ss_pred eecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEcccC
Q 013270 234 GFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEG 280 (446)
Q Consensus 234 ~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a~~~ 280 (446)
+++. ++.++|||||+|.+.++|.+|+..++..|+||.|.|.++..-
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 9985 699999999999999999999998888999999999998654
No 262
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=121.62 Aligned_cols=78 Identities=22% Similarity=0.401 Sum_probs=71.5
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+|+++|+++|++||.|..|+|++ +||||+|.+.++|.+|+..|| ..|+|+.|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 55678999999999999999999999999999999973 499999999999999999998 779999999999
Q ss_pred cccCCCC
Q 013270 277 AAEGKNR 283 (446)
Q Consensus 277 a~~~~~~ 283 (446)
+.+...+
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9877544
No 263
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=124.58 Aligned_cols=81 Identities=26% Similarity=0.382 Sum_probs=73.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..++ ..|+|+.|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999988766 2578999999999999999999999998 779999999999
Q ss_pred cccCCCC
Q 013270 277 AAEGKNR 283 (446)
Q Consensus 277 a~~~~~~ 283 (446)
+.++...
T Consensus 88 a~~~~~~ 94 (96)
T 1fjc_A 88 TGEKGGT 94 (96)
T ss_dssp CSSSCCC
T ss_pred cCCCCCC
Confidence 9876543
No 264
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=2.9e-16 Score=124.74 Aligned_cols=81 Identities=25% Similarity=0.388 Sum_probs=73.1
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+|+..|| ..|+|+.|+|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 4567899999999999999999999999999999986 4599999999999999999988 779999999999
Q ss_pred cccCCCCCCC
Q 013270 277 AAEGKNRTSS 286 (446)
Q Consensus 277 a~~~~~~~~~ 286 (446)
+.++..+...
T Consensus 80 a~~~~~~~~~ 89 (103)
T 2dgu_A 80 AKPPDQKRKE 89 (103)
T ss_dssp CCCCCCCCCC
T ss_pred cCCCcccchh
Confidence 9887765443
No 265
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1e-16 Score=126.92 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=70.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|.+|++++ ++|||||+|.+.++|.+|+..|| ..|+|+.|+|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999999973 48999999999999999999988 789999999999
Q ss_pred cccC
Q 013270 277 AAEG 280 (446)
Q Consensus 277 a~~~ 280 (446)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8763
No 266
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=2.4e-16 Score=136.43 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=77.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|..|.|++++.+|.++|||||+|.+.++|.+||..+++. |.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999987655 9999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 876543
No 267
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=6.6e-17 Score=128.24 Aligned_cols=79 Identities=23% Similarity=0.384 Sum_probs=73.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeeccc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASV 184 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~~ 184 (446)
..++|||+|||+++|+++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|.+|+. .+..++|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 46899999999999999999999999999999999998 99999999999999999999999 55669999999998864
Q ss_pred C
Q 013270 185 G 185 (446)
Q Consensus 185 ~ 185 (446)
.
T Consensus 86 ~ 86 (102)
T 2xs2_A 86 K 86 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 268
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-17 Score=129.62 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=73.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.. .+++++.+++++|||||+|.+.++|.+||+ ++ ..+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999988 777787889999999999999999999999 65 459999999999
Q ss_pred cccCC
Q 013270 182 ASVGP 186 (446)
Q Consensus 182 ~~~~~ 186 (446)
+....
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 86543
No 269
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=123.46 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=72.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.| +|+++ .+++++|||||+|.+.++|.+||..+++. |.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34568999999999999999999999999977 56666 58999999999999999999999988765 999999999
Q ss_pred ecccCC
Q 013270 181 LASVGP 186 (446)
Q Consensus 181 ~~~~~~ 186 (446)
++....
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 987554
No 270
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.65 E-value=3.5e-16 Score=141.41 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=77.2
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
..+.++|||+|||+++|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+||..++ ..+.|+.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3456899999999999999999999999999999999999999999999999999999999999998 779999999999
Q ss_pred cccCC
Q 013270 277 AAEGK 281 (446)
Q Consensus 277 a~~~~ 281 (446)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87554
No 271
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=2e-16 Score=128.33 Aligned_cols=83 Identities=20% Similarity=0.353 Sum_probs=75.2
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|.+|+|+++ +.++|||||+|.+.++|.+|+..|| ..|+|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445789999999999999999999999999999999876 5569999999999999999999988 789999999999
Q ss_pred cccCCCC
Q 013270 277 AAEGKNR 283 (446)
Q Consensus 277 a~~~~~~ 283 (446)
+.++...
T Consensus 82 a~~~~~~ 88 (115)
T 3lqv_A 82 YNANRAF 88 (115)
T ss_dssp CCHHHHT
T ss_pred ecCChhh
Confidence 9875544
No 272
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=1.3e-16 Score=125.32 Aligned_cols=82 Identities=28% Similarity=0.444 Sum_probs=74.4
Q ss_pred ccCcceeecCCCCCcccHHHHH----HHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLR----GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQL 272 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l 272 (446)
..+.++|||+|||+.+++++|+ ++|++||.|..|++++ ++.++|||||+|.+.++|.+|+..|| ..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999999874 57889999999999999999999988 77999999
Q ss_pred EEEEcccCCC
Q 013270 273 QCQKAAEGKN 282 (446)
Q Consensus 273 ~v~~a~~~~~ 282 (446)
+|.|+.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987653
No 273
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.1e-16 Score=119.24 Aligned_cols=77 Identities=21% Similarity=0.412 Sum_probs=69.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|+ +|||||+|.+.++|.+|+..+++ .+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467999999999999999999999999999999997 57999999999999999988775 49999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 875544
No 274
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=128.48 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=70.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHH----HhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccce
Q 013270 104 VSQRKIFVHGLGWDTTQESLL----SAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMAS 178 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~ 178 (446)
...++|||+|||+++++++|+ ++|++||.|.+|.+. .+++++|||||+|.+.++|..|+..+++. |.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 357899999999999999876 699999999998875 36889999999999999999999998765 9999999
Q ss_pred eeecccC
Q 013270 179 CQLASVG 185 (446)
Q Consensus 179 v~~~~~~ 185 (446)
|.++...
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9998643
No 275
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=2.3e-16 Score=121.63 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=63.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEc
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a 277 (446)
....++|||+|||+++|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|.++. .....+.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEc
Confidence 567789999999999999999999999999999999875 6999999999999998432 1123467999999999
Q ss_pred ccCCCC
Q 013270 278 AEGKNR 283 (446)
Q Consensus 278 ~~~~~~ 283 (446)
.++..+
T Consensus 82 ~~k~~~ 87 (89)
T 3d2w_A 82 EPKHNK 87 (89)
T ss_dssp C-----
T ss_pred CCCCcC
Confidence 876543
No 276
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=4.2e-16 Score=122.25 Aligned_cols=76 Identities=22% Similarity=0.424 Sum_probs=70.1
Q ss_pred ccCcceeecCCCCC-cccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 198 AQGERKIYVSNVPR-DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 198 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
....++|||+|||+ .+++++|+++|+.||.|.+|+|. +|||||+|.+.++|.+|+..+| ..++|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 55789999999998 99999999999999999999983 8999999999999999999998 77999999999
Q ss_pred EcccCC
Q 013270 276 KAAEGK 281 (446)
Q Consensus 276 ~a~~~~ 281 (446)
++..+.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 997653
No 277
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=127.02 Aligned_cols=77 Identities=22% Similarity=0.222 Sum_probs=70.7
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
...++|||+|||+.+++++|+++|++||.|..|+|++ ++|||||+|.+.++|.+|+..|| ..|+|+.|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999999875 48999999999999999999998 7899999999999
Q ss_pred ccCC
Q 013270 278 AEGK 281 (446)
Q Consensus 278 ~~~~ 281 (446)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7644
No 278
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2e-16 Score=123.98 Aligned_cols=78 Identities=22% Similarity=0.390 Sum_probs=70.1
Q ss_pred ccCcceeecCCCCC-cccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 198 AQGERKIYVSNVPR-DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 198 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
..+.++|||+|||+ .+++++|+++|++||.|.+|+|. +|||||+|.+.++|.+|+..|+ ..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 55688999999998 99999999999999999999984 7899999999999999999988 77999999999
Q ss_pred EcccCCCC
Q 013270 276 KAAEGKNR 283 (446)
Q Consensus 276 ~a~~~~~~ 283 (446)
++.++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 279
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=2.2e-16 Score=126.49 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=70.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
....++|||+|||+++|+++|+++|+.|| .|..|+|.. .+++|||||+|.+.++|++||+.+++. |.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44578999999999999999999999999 999999853 358999999999999999999988765 999999999
Q ss_pred ecccC
Q 013270 181 LASVG 185 (446)
Q Consensus 181 ~~~~~ 185 (446)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98643
No 280
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.8e-16 Score=125.43 Aligned_cols=77 Identities=21% Similarity=0.200 Sum_probs=68.6
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC---CcccCccce
Q 013270 103 DVSQRKIFVHGLGWD-TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ---RKVNNRMAS 178 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~---~~~~g~~i~ 178 (446)
....++|||+|||++ +|+++|+++|+.||.|.+|+|++ ++|||||+|.+.++|.+|++.++ ..|.||.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445899999999998 99999999999999999999973 47899999999999999999764 349999999
Q ss_pred eeecccC
Q 013270 179 CQLASVG 185 (446)
Q Consensus 179 v~~~~~~ 185 (446)
|.++...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9998643
No 281
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.2e-16 Score=126.58 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=68.1
Q ss_pred CeEEEeCC----CCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEcc----HHH----HHHHHH--cCCCc-
Q 013270 107 RKIFVHGL----GWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT----RKA----AVKALK--NPQRK- 171 (446)
Q Consensus 107 ~~l~V~nL----p~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~----~~~----A~~Al~--~~~~~- 171 (446)
+.|||+|| |+.+++++|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .+++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 433 888988 65654
Q ss_pred ccCccceeeec
Q 013270 172 VNNRMASCQLA 182 (446)
Q Consensus 172 ~~g~~i~v~~~ 182 (446)
|.||.|+|..-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999974
No 282
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=3.6e-16 Score=136.64 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=77.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+++++|+++|+.||.|..|.|++|+ ++.++|||||+|.+.++|.+|+..+| ..|+|+.|+|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999997 99999999999999999999999998 789999999999
Q ss_pred cccCC
Q 013270 277 AAEGK 281 (446)
Q Consensus 277 a~~~~ 281 (446)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 97643
No 283
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-17 Score=135.31 Aligned_cols=85 Identities=29% Similarity=0.348 Sum_probs=77.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeE--------EEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-cc
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEE--------CKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VN 173 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~ 173 (446)
..+.++|||+|||+++++++|+++|+.||.|.+ |+|++++.+++++|||||+|.+.++|.+||..+++. |.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346799999999999999999999999999999 999999889999999999999999999999988755 99
Q ss_pred CccceeeecccCCC
Q 013270 174 NRMASCQLASVGPT 187 (446)
Q Consensus 174 g~~i~v~~~~~~~~ 187 (446)
|+.|.|.++.....
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999875543
No 284
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=122.33 Aligned_cols=83 Identities=30% Similarity=0.507 Sum_probs=73.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.| ..|++++++.+++++|||||+|.+.++|.+||+.+++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34568999999999999999999999977 4788999988999999999999999999999998765 5999999999
Q ss_pred ecccCCC
Q 013270 181 LASVGPT 187 (446)
Q Consensus 181 ~~~~~~~ 187 (446)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9875443
No 285
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.9e-16 Score=120.36 Aligned_cols=80 Identities=26% Similarity=0.476 Sum_probs=70.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+.+|+++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|.+||. ++ ..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 56666666 99999999999999999 88 789999999999
Q ss_pred cccCCCC
Q 013270 277 AAEGKNR 283 (446)
Q Consensus 277 a~~~~~~ 283 (446)
+.++...
T Consensus 79 a~~~~~~ 85 (94)
T 2e5g_A 79 REQKEFQ 85 (94)
T ss_dssp SCCSCCC
T ss_pred CCcCCCC
Confidence 8766544
No 286
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.2e-16 Score=121.00 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=68.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-cc--Ccccee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VN--NRMASC 179 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~--g~~i~v 179 (446)
....++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.+++. +. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 446799999999999999999999999999999998643 689999999999999999987654 88 999999
Q ss_pred eecccC
Q 013270 180 QLASVG 185 (446)
Q Consensus 180 ~~~~~~ 185 (446)
.++...
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998654
No 287
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=122.69 Aligned_cols=77 Identities=13% Similarity=0.211 Sum_probs=69.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccC-----ccc
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNN-----RMA 177 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g-----~~i 177 (446)
...++|||+|||+++|+++|+++|+.||.|.+|+|+++ |||||+|.+.++|++||+.++.. |.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45799999999999999999999999999999999876 79999999999999999988765 888 999
Q ss_pred eeeecccCCC
Q 013270 178 SCQLASVGPT 187 (446)
Q Consensus 178 ~v~~~~~~~~ 187 (446)
.|.++.....
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999876443
No 288
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.4e-16 Score=117.17 Aligned_cols=74 Identities=32% Similarity=0.408 Sum_probs=67.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcC-CC-cccCccceee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP-QR-KVNNRMASCQ 180 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~-~~-~~~g~~i~v~ 180 (446)
+...++|||+|||.++|+++|+++|+.||.|.+|++++ ++|||||+|.+.++|.+|+..+ ++ .+.|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 45679999999999999999999999999999999986 3689999999999999999987 65 4999999999
Q ss_pred ec
Q 013270 181 LA 182 (446)
Q Consensus 181 ~~ 182 (446)
++
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 289
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.6e-16 Score=124.30 Aligned_cols=78 Identities=14% Similarity=0.214 Sum_probs=69.3
Q ss_pred ccCcceeec--CCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Ccc-----cC
Q 013270 198 AQGERKIYV--SNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMF-----EG 269 (446)
Q Consensus 198 ~~~~~~l~V--~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~-----~G 269 (446)
..+.++||| +||++.+++++|+++|++||.|.+|.|+.+ ||||||+|.+.++|.+|++.|| ..| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 445788999 779999999999999999999999988643 7999999999999999999999 666 68
Q ss_pred eEEEEEEcccCC
Q 013270 270 HQLQCQKAAEGK 281 (446)
Q Consensus 270 r~l~v~~a~~~~ 281 (446)
++|.|.|+....
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999997544
No 290
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=118.84 Aligned_cols=80 Identities=28% Similarity=0.365 Sum_probs=71.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|| .+|+++|+++|++||.|.+|+|. .++|||||+|.+.++|.+||..|+ ..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456789999996 89999999999999999999984 458999999999999999999998 679999999999
Q ss_pred cccCCCCCC
Q 013270 277 AAEGKNRTS 285 (446)
Q Consensus 277 a~~~~~~~~ 285 (446)
+.++..+..
T Consensus 84 a~~~~~~~~ 92 (97)
T 1x5p_A 84 ARKQPMLDS 92 (97)
T ss_dssp CSSCCCCCS
T ss_pred CCCCCCCCC
Confidence 988765443
No 291
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.4e-16 Score=124.09 Aligned_cols=80 Identities=19% Similarity=0.414 Sum_probs=71.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||.++|+++|+++|+.||.|.+|+|+++ +|||||+|.+.++|.+|+..+++. |.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3446799999999999999999999999999999999865 689999999999999999887654 999999999
Q ss_pred ecccCCC
Q 013270 181 LASVGPT 187 (446)
Q Consensus 181 ~~~~~~~ 187 (446)
++.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9876543
No 292
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=1.2e-15 Score=129.54 Aligned_cols=82 Identities=16% Similarity=0.076 Sum_probs=72.2
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccC--eEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEG--HQLQC 274 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~G--r~l~v 274 (446)
.....+|||+||++.+|+++|+++|++||.|.+|+|+.+ .++|||||+|.+.++|.+|++.|| ..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 445678999999999999999999999999999999754 258999999999999999999999 66755 99999
Q ss_pred EEcccCCCC
Q 013270 275 QKAAEGKNR 283 (446)
Q Consensus 275 ~~a~~~~~~ 283 (446)
.|++++...
T Consensus 119 ~~Ak~~~l~ 127 (164)
T 1sjr_A 119 DFSKLTSLN 127 (164)
T ss_dssp EECSSSSCC
T ss_pred EEecCCccc
Confidence 999987543
No 293
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-16 Score=121.08 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=68.9
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEcc
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAA 278 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a~ 278 (446)
...++|||+|||+.+++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|+.. ...+.|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 45689999999999999999999999999999999865 699999999999999865332 245799999999998
Q ss_pred cCCCCC
Q 013270 279 EGKNRT 284 (446)
Q Consensus 279 ~~~~~~ 284 (446)
++....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 294
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.3e-16 Score=120.75 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=70.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCC-eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC--CcccCeEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGE-IETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ--KMFEGHQLQC 274 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~--~~~~Gr~l~v 274 (446)
....++|||+|||+++|+++|+++|++||. |..+.+ . ++|||||+|.+.++|.+|+..|| ..|+|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-L------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-E------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-c------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 665555 2 38999999999999999999887 4699999999
Q ss_pred EEcccCCCCCC
Q 013270 275 QKAAEGKNRTS 285 (446)
Q Consensus 275 ~~a~~~~~~~~ 285 (446)
.|+.++..+..
T Consensus 78 ~~a~~~~~~~~ 88 (93)
T 2cqh_A 78 DYSVSKKLRSS 88 (93)
T ss_dssp EECCCCCCCCC
T ss_pred EEccCccccCC
Confidence 99988766543
No 295
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=6e-16 Score=122.41 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=68.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||.++|+++|+++|+.||.|.+|+|+ +++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3457999999999999999999999999999999997 46799999999999999999987655 9999999998
Q ss_pred cc
Q 013270 182 AS 183 (446)
Q Consensus 182 ~~ 183 (446)
+.
T Consensus 98 a~ 99 (101)
T 2la4_A 98 GK 99 (101)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 296
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=120.47 Aligned_cols=78 Identities=26% Similarity=0.311 Sum_probs=69.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|+++ +|||||+|.+.++|.+|++.+++. |.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456799999999999999999999999999999999743 689999999999999999887654 9999999999
Q ss_pred cccCC
Q 013270 182 ASVGP 186 (446)
Q Consensus 182 ~~~~~ 186 (446)
+....
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 86543
No 297
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.1e-15 Score=135.94 Aligned_cols=84 Identities=25% Similarity=0.456 Sum_probs=78.0
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEc
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKA 277 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a 277 (446)
....++|||+|||+++|+++|+++|+.||.|.+|+|++|+.++.++|||||+|.+.++|.+||...+..|+|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 56789999999999999999999999999999999999999999999999999999999999998668899999999998
Q ss_pred ccCC
Q 013270 278 AEGK 281 (446)
Q Consensus 278 ~~~~ 281 (446)
....
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 7654
No 298
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4.7e-16 Score=125.88 Aligned_cols=77 Identities=19% Similarity=0.354 Sum_probs=68.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCC---CCccceEEEEEccHHHHHHHHHcCCCcccCccceee
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVT---GKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQ 180 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~---g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~ 180 (446)
...++|||+|||+++|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++||+.++ .++|+.+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEec
Confidence 4579999999999999999999999999999 888888777 7999999999999999999999883 3788877776
Q ss_pred ec
Q 013270 181 LA 182 (446)
Q Consensus 181 ~~ 182 (446)
..
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 299
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=1.5e-16 Score=134.32 Aligned_cols=86 Identities=23% Similarity=0.374 Sum_probs=73.4
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEE--Ee---ecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGP--IG---FDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQ 271 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~--i~---~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~ 271 (446)
....++|||+|||+.+|+++|+++|+.||.|..+. ++ +...+++++|||||+|.+.++|.+|+..|| ..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45678999999999999999999999999998751 11 113479999999999999999999999998 7799999
Q ss_pred EEEEEcccCCCC
Q 013270 272 LQCQKAAEGKNR 283 (446)
Q Consensus 272 l~v~~a~~~~~~ 283 (446)
|.|.|+.....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876544
No 300
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.4e-16 Score=125.55 Aligned_cols=81 Identities=17% Similarity=0.423 Sum_probs=71.5
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCC---CCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITT---GKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQC 274 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~---g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v 274 (446)
....++|||+|||+.+|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.++ .++|+.|.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEe
Confidence 34578999999999999999999999999999 888888777 7999999999999999999999984 478888887
Q ss_pred EEcccC
Q 013270 275 QKAAEG 280 (446)
Q Consensus 275 ~~a~~~ 280 (446)
..+...
T Consensus 83 ~~~~~~ 88 (114)
T 2dnl_A 83 VSSPTI 88 (114)
T ss_dssp ECCSSS
T ss_pred ccCCCc
Confidence 765543
No 301
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=2e-15 Score=123.37 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=73.9
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeE-EEEEeCCHHHHHHHHHhCC-CcccC--eEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGF-AIFVYKTVEGARKALEEPQ-KMFEG--HQLQ 273 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~-afV~F~~~~~A~~Ai~~~~-~~~~G--r~l~ 273 (446)
...-..|||+||++.+|+++|+++|++||.|.+|+|+.+. +|| |||+|.+.++|.+|++.|| ..|.| +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 4455788999999999999999999999999999987652 688 9999999999999999999 67887 9999
Q ss_pred EEEcccCCCCCCCC
Q 013270 274 CQKAAEGKNRTSSN 287 (446)
Q Consensus 274 v~~a~~~~~~~~~~ 287 (446)
|.|++++......+
T Consensus 100 I~~ak~~~l~v~~n 113 (130)
T 3zzy_A 100 IDFSKLTSLNVKYN 113 (130)
T ss_dssp EEECSCSSCCCCCC
T ss_pred EEecCCCceeEEec
Confidence 99999876544443
No 302
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=1e-15 Score=117.85 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=69.1
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcc
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAA 278 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~ 278 (446)
..++|||+|||+.+++++|+++|++| .|.+|+|. +++|||||+|.+.++|.+|+..+| ..++|+.|+|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 569999999999999999999998 67999999999996
Q ss_pred cCC
Q 013270 279 EGK 281 (446)
Q Consensus 279 ~~~ 281 (446)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 303
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=119.87 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=68.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|. ++++.+ +++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 777654 68899999999999999999987655 9999999999
Q ss_pred cccC
Q 013270 182 ASVG 185 (446)
Q Consensus 182 ~~~~ 185 (446)
+...
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8643
No 304
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=8.8e-16 Score=122.90 Aligned_cols=79 Identities=25% Similarity=0.474 Sum_probs=69.4
Q ss_pred ccCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccce
Q 013270 100 ADRDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMAS 178 (446)
Q Consensus 100 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~ 178 (446)
...+...++|||+|||+++|+++|+++|+.||.|.+|+|+ +|||||+|.+.++|.+|+..+++. +.|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445678999999999999999999999999999999997 689999999999999999987654 9999999
Q ss_pred eeecccCC
Q 013270 179 CQLASVGP 186 (446)
Q Consensus 179 v~~~~~~~ 186 (446)
|.++....
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99986543
No 305
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=1.4e-15 Score=131.50 Aligned_cols=82 Identities=23% Similarity=0.405 Sum_probs=77.4
Q ss_pred cceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEccc
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAE 279 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~ 279 (446)
.++|||+|||+.+++++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|.+|++.++ ..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999998899999999999999999999999888 779999999999986
Q ss_pred CCC
Q 013270 280 GKN 282 (446)
Q Consensus 280 ~~~ 282 (446)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 306
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9e-16 Score=120.17 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=71.7
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEE-EeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGP-IGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~-i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
....++|||+|||+.+++++|+++|+.||.|.+|+ |++++.++ .|||+|.+.++|.+|+..|| ..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44578999999999999999999999999999994 88776543 39999999999999999998 78999999999
Q ss_pred EcccCC
Q 013270 276 KAAEGK 281 (446)
Q Consensus 276 ~a~~~~ 281 (446)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998774
No 307
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=8.3e-16 Score=123.74 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=68.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
+..++|||+|||+++|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|+..+++. |.|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999998863 6789999999999999999988755 99999999998
Q ss_pred ccC
Q 013270 183 SVG 185 (446)
Q Consensus 183 ~~~ 185 (446)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 654
No 308
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.61 E-value=1.1e-15 Score=132.50 Aligned_cols=83 Identities=23% Similarity=0.375 Sum_probs=78.2
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEcc
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAA 278 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~ 278 (446)
+.++|||+|||+++++++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|.+|+..++ ..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999888 77999999999998
Q ss_pred cCCC
Q 013270 279 EGKN 282 (446)
Q Consensus 279 ~~~~ 282 (446)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7653
No 309
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.1e-15 Score=133.44 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++++++|+++|+.||.|.+|.|+.++ +++++|||||+|.+.++|.+||+.+++. |.|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 9999999999999999999999988755 9999999999
Q ss_pred ccc
Q 013270 182 ASV 184 (446)
Q Consensus 182 ~~~ 184 (446)
+..
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 863
No 310
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=116.01 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=67.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC-CcccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ-RKVNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~-~~~~g~~i~v~~~ 182 (446)
...++|||+|||+++|+++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|.+||. ++ ..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356899999999999999999999999999987 66666665 99999999999999999 66 4599999999987
Q ss_pred ccCC
Q 013270 183 SVGP 186 (446)
Q Consensus 183 ~~~~ 186 (446)
....
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6443
No 311
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.6e-15 Score=118.80 Aligned_cols=77 Identities=17% Similarity=0.310 Sum_probs=68.1
Q ss_pred CCCCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceee
Q 013270 103 DVSQRKIFVHGLGW-DTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQ 180 (446)
Q Consensus 103 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~ 180 (446)
..+.++|||+|||+ ++|+++|+++|+.||.|.+|+|. +|||||+|.+.++|.+|+..+++ .+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44689999999998 99999999999999999999983 68999999999999999998765 4999999999
Q ss_pred ecccCCC
Q 013270 181 LASVGPT 187 (446)
Q Consensus 181 ~~~~~~~ 187 (446)
++.....
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9875543
No 312
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=4.9e-16 Score=121.93 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=71.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHH----HhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccc
Q 013270 103 DVSQRKIFVHGLGWDTTQESLL----SAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMA 177 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i 177 (446)
....++|||+|||+++++++|+ ++|+.||.|.+|+|++ +++++|||||+|.+.++|.+|+..+++. +.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467999999999999999999 9999999999999873 5788999999999999999999987655 999999
Q ss_pred eeeecccC
Q 013270 178 SCQLASVG 185 (446)
Q Consensus 178 ~v~~~~~~ 185 (446)
.|.++...
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99998643
No 313
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=114.81 Aligned_cols=78 Identities=19% Similarity=0.331 Sum_probs=67.1
Q ss_pred Ccce-eecCCCCCcccHHH----HHHHhccc-CCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEE
Q 013270 200 GERK-IYVSNVPRDVEKEK----LRGFFERF-GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQL 272 (446)
Q Consensus 200 ~~~~-l~V~nLp~~~te~~----L~~~F~~~-G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l 272 (446)
++.+ |||+|||+.+++++ |+++|++| |.|.+| ++ |+|||+|.+.++|.+|++.|+ ..|.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3444 99999999999988 55899999 599887 33 999999999999999999999 78999999
Q ss_pred EEEEcccCCCCCCCC
Q 013270 273 QCQKAAEGKNRTSSN 287 (446)
Q Consensus 273 ~v~~a~~~~~~~~~~ 287 (446)
+|.||..+..-....
T Consensus 77 ~v~~A~~~sd~~~~~ 91 (96)
T 2diu_A 77 IVSFTPKNRELCETS 91 (96)
T ss_dssp EEESSCCSCCCCCCC
T ss_pred EEEecCCCcceeEec
Confidence 999998877654443
No 314
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=116.91 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=69.4
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++ +||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345679999999999999999999999999999999963 39999999999999999987655 999999999
Q ss_pred ecccCCC
Q 013270 181 LASVGPT 187 (446)
Q Consensus 181 ~~~~~~~ 187 (446)
++.....
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9875543
No 315
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=8e-16 Score=120.46 Aligned_cols=78 Identities=27% Similarity=0.392 Sum_probs=69.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4467999999999999999999999999988776 247899999999999999999999988755 9999999999
Q ss_pred cccC
Q 013270 182 ASVG 185 (446)
Q Consensus 182 ~~~~ 185 (446)
+...
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 8643
No 316
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=2.5e-15 Score=119.23 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=72.7
Q ss_pred ccCcceeecCCCCC-----cccHHHHHHHhcccCCeeEEEEeecCCC-CCceeEEEEEeCCHHHHHHHHHhCC-CcccCe
Q 013270 198 AQGERKIYVSNVPR-----DVEKEKLRGFFERFGEIETGPIGFDITT-GKSRGFAIFVYKTVEGARKALEEPQ-KMFEGH 270 (446)
Q Consensus 198 ~~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~V~~v~i~~d~~~-g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr 270 (446)
..++++|+|+||.. +.++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|+..|| ..|+||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45678999999963 2378999999999999999999998654 6899999999999999999999999 789999
Q ss_pred EEEEEEccc
Q 013270 271 QLQCQKAAE 279 (446)
Q Consensus 271 ~l~v~~a~~ 279 (446)
.|+|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999965
No 317
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=2.4e-15 Score=117.87 Aligned_cols=76 Identities=17% Similarity=0.334 Sum_probs=67.5
Q ss_pred cCCCCCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccce
Q 013270 101 DRDVSQRKIFVHGLGW-DTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMAS 178 (446)
Q Consensus 101 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~ 178 (446)
......++|||+|||+ ++++++|+++|+.||.|.+|+|. +|||||+|.+.++|.+|+..+++. +.|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3355689999999998 99999999999999999999982 789999999999999999987755 8999999
Q ss_pred eeeccc
Q 013270 179 CQLASV 184 (446)
Q Consensus 179 v~~~~~ 184 (446)
|.++..
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 999753
No 318
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=116.64 Aligned_cols=77 Identities=26% Similarity=0.402 Sum_probs=68.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++ +||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345689999999999999999999999999999999963 39999999999999999987655 999999999
Q ss_pred ecccCC
Q 013270 181 LASVGP 186 (446)
Q Consensus 181 ~~~~~~ 186 (446)
++....
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 987553
No 319
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=1.2e-15 Score=117.53 Aligned_cols=76 Identities=22% Similarity=0.206 Sum_probs=62.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeec
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLA 182 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~ 182 (446)
....++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.++.. ....+.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEc
Confidence 446799999999999999999999999999999999864 78999999999999985422 223367899999887
Q ss_pred cc
Q 013270 183 SV 184 (446)
Q Consensus 183 ~~ 184 (446)
..
T Consensus 82 ~~ 83 (89)
T 3d2w_A 82 EP 83 (89)
T ss_dssp C-
T ss_pred CC
Confidence 53
No 320
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=6.4e-15 Score=119.94 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=69.0
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeE-EEEEeCCHHHHHHHHHhCC-CcccC--eEEEE
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGF-AIFVYKTVEGARKALEEPQ-KMFEG--HQLQC 274 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~-afV~F~~~~~A~~Ai~~~~-~~~~G--r~l~v 274 (446)
.....|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|++.|| ..|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 33456789999999999999999999999999999652 386 9999999999999999999 67877 69999
Q ss_pred EEcccCCCC
Q 013270 275 QKAAEGKNR 283 (446)
Q Consensus 275 ~~a~~~~~~ 283 (446)
.||+++...
T Consensus 97 ~~Ak~~~l~ 105 (124)
T 2e5i_A 97 EYARPTRLN 105 (124)
T ss_dssp ECCSCSCCC
T ss_pred EEecCCcce
Confidence 999887643
No 321
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=3e-15 Score=118.85 Aligned_cols=77 Identities=30% Similarity=0.403 Sum_probs=68.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...++|||+|||+++|+++|+++|+.||.|.+|+|+ +|||||+|.+.++|.+||..++.. |.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 457999999999999999999999999999999986 459999999999999999987654 99999999998
Q ss_pred ccCCCC
Q 013270 183 SVGPTG 188 (446)
Q Consensus 183 ~~~~~~ 188 (446)
......
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 765443
No 322
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=3.2e-15 Score=132.50 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=73.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeeccc
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASV 184 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~~ 184 (446)
.++|||+|||+++|+++|+++|+.||.|.+|+|+++. +++++|||||+|.+.++|.+|+..++..+.|+.|.|.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 5899999999999999999999999999999999986 69999999999999999999999998899999999998653
No 323
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.3e-15 Score=116.47 Aligned_cols=76 Identities=26% Similarity=0.400 Sum_probs=67.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccC--CCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCcccee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGS--GEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASC 179 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v 179 (446)
....++|||+|||+++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|+..+++. |.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467999999999999999999999999 899988874 579999999999999999987655 99999999
Q ss_pred eecccCC
Q 013270 180 QLASVGP 186 (446)
Q Consensus 180 ~~~~~~~ 186 (446)
.++....
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9987544
No 324
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=1.4e-15 Score=123.17 Aligned_cols=78 Identities=15% Similarity=0.278 Sum_probs=66.2
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeE-----E
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQ-----L 272 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~-----l 272 (446)
...++|||+|||+++++++|+++|++||.|.+|.|+.| |||||+|.+.++|.+||+.|| ..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999765 899999999999999999998 7899998 7
Q ss_pred EEEEcccCCCC
Q 013270 273 QCQKAAEGKNR 283 (446)
Q Consensus 273 ~v~~a~~~~~~ 283 (446)
+|..+.+....
T Consensus 87 ~v~~~~~~~~~ 97 (115)
T 3beg_B 87 RVKVDGPRSPS 97 (115)
T ss_dssp EEEECC----C
T ss_pred EeccCCCCCCC
Confidence 78777665443
No 325
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=4.5e-15 Score=147.85 Aligned_cols=83 Identities=25% Similarity=0.434 Sum_probs=77.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||+++|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++. |.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999998755 9999999999
Q ss_pred cccC
Q 013270 182 ASVG 185 (446)
Q Consensus 182 ~~~~ 185 (446)
+...
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 8643
No 326
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=4.3e-15 Score=119.40 Aligned_cols=74 Identities=16% Similarity=0.378 Sum_probs=67.2
Q ss_pred CCCCeEEEeCCCCC-CCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 104 VSQRKIFVHGLGWD-TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 104 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
...++|||+|||++ +|+++|+++|+.||.|.+|+| ++|||||+|.+.++|.+|+..+++. |.|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999 999999999999999999998 5789999999999999999887654 9999999999
Q ss_pred cccC
Q 013270 182 ASVG 185 (446)
Q Consensus 182 ~~~~ 185 (446)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 327
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=2.7e-15 Score=115.39 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=67.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...++|||+|||+++++++|+++|++| .|.+|+|. +++|||||+|.+.++|.+|++.+++. +.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 357899999999999999999999999 99999983 68899999999999999999988765 99999999997
Q ss_pred cc
Q 013270 183 SV 184 (446)
Q Consensus 183 ~~ 184 (446)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 328
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=3.5e-16 Score=132.09 Aligned_cols=84 Identities=25% Similarity=0.292 Sum_probs=71.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEE--E---EeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCcc
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK--L---VIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRM 176 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~--i---~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~ 176 (446)
....++|||+|||+++|+++|+++|+.||.|..|. + ++...+++++|||||+|.+.++|.+||..+++. |.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45679999999999999999999999999988751 1 111247899999999999999999999988755 99999
Q ss_pred ceeeecccCC
Q 013270 177 ASCQLASVGP 186 (446)
Q Consensus 177 i~v~~~~~~~ 186 (446)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999986543
No 329
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-15 Score=116.00 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=65.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeeccc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASV 184 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~~ 184 (446)
..++|||+|||+++|+++|+++|+.||.|.+|+|+++ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 5799999999999999999999999999999999754 789999999999999876443 3346899999998765
Q ss_pred CC
Q 013270 185 GP 186 (446)
Q Consensus 185 ~~ 186 (446)
..
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 330
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.5e-15 Score=116.85 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=67.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCC-eeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC--cccCcccee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGE-IEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR--KVNNRMASC 179 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~--~~~g~~i~v 179 (446)
....++|||+|||+++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|+..+++ .+.|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345799999999999999999999999999 6666663 478999999999999999998875 499999999
Q ss_pred eecccCCC
Q 013270 180 QLASVGPT 187 (446)
Q Consensus 180 ~~~~~~~~ 187 (446)
.++.....
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99875443
No 331
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.58 E-value=3.4e-15 Score=127.08 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=70.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+++ ++|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999999876 5899999999999999999987654 999999999
Q ss_pred eccc
Q 013270 181 LASV 184 (446)
Q Consensus 181 ~~~~ 184 (446)
++..
T Consensus 144 ~a~~ 147 (150)
T 2i2y_A 144 LSNG 147 (150)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9764
No 332
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.57 E-value=8.7e-15 Score=132.23 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=77.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...++|||+|||.++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|+..+++. |.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999999989999999999999999999999987654 99999999998
Q ss_pred ccCCC
Q 013270 183 SVGPT 187 (446)
Q Consensus 183 ~~~~~ 187 (446)
...+.
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 76543
No 333
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=6.6e-15 Score=127.07 Aligned_cols=82 Identities=23% Similarity=0.351 Sum_probs=76.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceee
Q 013270 102 RDVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQ 180 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~ 180 (446)
.....++|||+|||.++|+++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|.+|+..+++. +.|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999987655 999999999
Q ss_pred ecc
Q 013270 181 LAS 183 (446)
Q Consensus 181 ~~~ 183 (446)
++.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 874
No 334
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=4.8e-15 Score=113.68 Aligned_cols=71 Identities=25% Similarity=0.569 Sum_probs=65.9
Q ss_pred cCcceeecCCCCCcccHHHHHHHhccc----C-------CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Cc
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERF----G-------EIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KM 266 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~ 266 (446)
...++|||+|||+.+++++|+++|+.| | .|.+++++++ +|||||+|.+.++|.+|+ .+| ..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 9999999766 899999999999999999 888 78
Q ss_pred ccCeEEEEEE
Q 013270 267 FEGHQLQCQK 276 (446)
Q Consensus 267 ~~Gr~l~v~~ 276 (446)
|+|+.|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 335
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2e-14 Score=112.70 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=68.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|| ++|+++|+++|+.||.|.+|+|. +++|||||+|.+.++|.+||..+++. |.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346799999996 89999999999999999999983 57899999999999999999988765 9999999999
Q ss_pred cccCCC
Q 013270 182 ASVGPT 187 (446)
Q Consensus 182 ~~~~~~ 187 (446)
+.....
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 865443
No 336
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=3.3e-15 Score=121.05 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=61.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
..++|||+|||+++|+++|+++|+.||.|.+|.|+.+ |||||+|.+.++|.+||+.+++. |.|+.|.+.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 4689999999999999999999999999999999765 89999999999999999987755 9999954443
No 337
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.56 E-value=5.4e-15 Score=128.61 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=74.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...++|||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34799999999999999999999999999999999999889999999999999999999999987655 99999999986
Q ss_pred c
Q 013270 183 S 183 (446)
Q Consensus 183 ~ 183 (446)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 338
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.8e-15 Score=118.35 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=66.8
Q ss_pred CCCCCeEEE--eCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-c-----cC
Q 013270 103 DVSQRKIFV--HGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-V-----NN 174 (446)
Q Consensus 103 ~~~~~~l~V--~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~-----~g 174 (446)
....++||| +||++++|+++|+++|++||.|.+|.|+. .||||||+|.+.++|++|++.+++. + .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345789999 67999999999999999999999998853 3789999999999999999998865 5 57
Q ss_pred ccceeeecccCC
Q 013270 175 RMASCQLASVGP 186 (446)
Q Consensus 175 ~~i~v~~~~~~~ 186 (446)
+.|.|.++..-+
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 888888876443
No 339
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=5.1e-15 Score=128.10 Aligned_cols=80 Identities=28% Similarity=0.458 Sum_probs=73.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccceeeeccc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMASCQLASV 184 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~v~~~~~ 184 (446)
..++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|++..+..+.|+.|.|.++..
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 35799999999999999999999999999999999998899999999999999999999999544559999999999753
No 340
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.4e-15 Score=115.26 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=68.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEE-EEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECK-LVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~-i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
...++|||+|||+++|+++|+++|+.||.|.+|+ |++++.++ .|||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3578999999999999999999999999999994 88776544 3999999999999999977654 9999999999
Q ss_pred cccC
Q 013270 182 ASVG 185 (446)
Q Consensus 182 ~~~~ 185 (446)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8643
No 341
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=7.3e-15 Score=131.61 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=71.1
Q ss_pred CcceeecCCCC-CcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 200 GERKIYVSNVP-RDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 200 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
+.++|||+||| +.+|+++|+++|+.||.|.+|+|+++. +|||||+|.+.++|.+||+.|| ..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 899999999999999999999998763 7999999999999999999998 7899999999999
Q ss_pred ccCC
Q 013270 278 AEGK 281 (446)
Q Consensus 278 ~~~~ 281 (446)
+...
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 342
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.54 E-value=1.1e-14 Score=118.99 Aligned_cols=77 Identities=27% Similarity=0.379 Sum_probs=69.7
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|| ++|+++|+++|+.||.|.+|+|. .++|||||+|.+.++|.+|+..|+ ..|+|+.|.|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999996 69999999999999999999985 458999999999999999999988 789999999999
Q ss_pred cccCCC
Q 013270 277 AAEGKN 282 (446)
Q Consensus 277 a~~~~~ 282 (446)
+.++..
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 987654
No 343
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=2.5e-14 Score=121.34 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=68.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccC--ccceeee
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNN--RMASCQL 181 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g--~~i~v~~ 181 (446)
...+|||+||++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.|++. |.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4567999999999999999999999999999999754 36789999999999999999999866 755 9999999
Q ss_pred cccCC
Q 013270 182 ASVGP 186 (446)
Q Consensus 182 ~~~~~ 186 (446)
+....
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 87543
No 344
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.54 E-value=1.8e-14 Score=130.51 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=70.0
Q ss_pred ccCcceeecCCCCCcc---------cHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Ccc
Q 013270 198 AQGERKIYVSNVPRDV---------EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMF 267 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~ 267 (446)
....++|||+||+..+ ++++|+++|++||.|++|+|+.+ +|||||+|.+.++|+.|++.|+ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 89999999999999999999865 8999999999999999999998 667
Q ss_pred ------------cCeEEEEEEcccCCC
Q 013270 268 ------------EGHQLQCQKAAEGKN 282 (446)
Q Consensus 268 ------------~Gr~l~v~~a~~~~~ 282 (446)
.|+.|.|.||.....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 345
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=8.1e-15 Score=112.42 Aligned_cols=71 Identities=20% Similarity=0.390 Sum_probs=63.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccC----C-------CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-c
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGS----G-------EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-K 171 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~ 171 (446)
...++|||+|||+++|+++|+++|+.| | .|.+|++.++ +|||||+|.+.++|.+|+ .+++ .
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357999999999999999999999999 8 8999998643 789999999999999999 6664 5
Q ss_pred ccCccceeee
Q 013270 172 VNNRMASCQL 181 (446)
Q Consensus 172 ~~g~~i~v~~ 181 (446)
+.|+.|.|.+
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 346
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=2.7e-14 Score=127.18 Aligned_cols=82 Identities=26% Similarity=0.354 Sum_probs=76.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~ 182 (446)
...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|+..+++. +.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 46799999999999999999999999999999999999889999999999999999999999987655 99999999998
Q ss_pred ccC
Q 013270 183 SVG 185 (446)
Q Consensus 183 ~~~ 185 (446)
...
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 347
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.52 E-value=2.1e-14 Score=125.08 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=74.4
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCC--CceeEEEEEeCCHHHHHHHHHhCC-Cccc---CeEEE
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTG--KSRGFAIFVYKTVEGARKALEEPQ-KMFE---GHQLQ 273 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g--~~kG~afV~F~~~~~A~~Ai~~~~-~~~~---Gr~l~ 273 (446)
..++|||+|||+++|+++|+++|++||.|.+|+|++++.++ +++|||||+|.+.++|.+|++.++ ..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998877 899999999999999999999988 4443 68899
Q ss_pred EEEcccCCC
Q 013270 274 CQKAAEGKN 282 (446)
Q Consensus 274 v~~a~~~~~ 282 (446)
+.++.....
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 988876543
No 348
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=108.11 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=62.7
Q ss_pred CCeEEEeCCCCCCCHHH----HHHhhccC-CCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCcccee
Q 013270 106 QRKIFVHGLGWDTTQES----LLSAFGGS-GEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASC 179 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~----L~~~F~~~-G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v 179 (446)
.+.|||+|||+++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|.+|++.|++. +.||.|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999988 55899999 599888 34 99999999999999999998766 99999999
Q ss_pred eecccCCC
Q 013270 180 QLASVGPT 187 (446)
Q Consensus 180 ~~~~~~~~ 187 (446)
.++...+.
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99876544
No 349
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=4.1e-14 Score=112.19 Aligned_cols=80 Identities=10% Similarity=0.174 Sum_probs=70.4
Q ss_pred CCCCeEEEeCCCC-----CCCHHHHHHhhccCCCeeEEEEEeeCCC-CCccceEEEEEccHHHHHHHHHcCCCc-ccCcc
Q 013270 104 VSQRKIFVHGLGW-----DTTQESLLSAFGGSGEIEECKLVIDKVT-GKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRM 176 (446)
Q Consensus 104 ~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~v~~v~i~~~~~~-g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~ 176 (446)
..+++|+|+||.. +-++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|+..|++. +.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3579999999963 2478999999999999999999998754 689999999999999999999998766 99999
Q ss_pred ceeeecc
Q 013270 177 ASCQLAS 183 (446)
Q Consensus 177 i~v~~~~ 183 (446)
|.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999874
No 350
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=9e-14 Score=111.98 Aligned_cols=82 Identities=23% Similarity=0.347 Sum_probs=70.4
Q ss_pred ccCcceeecCCCCCcc-----------cHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-C
Q 013270 198 AQGERKIYVSNVPRDV-----------EKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-K 265 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~-----------te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~ 265 (446)
....++|+|+||.... ++++|+++|++||.|.+|.| .|+ .++|||||+|.+.++|.+|+..|| .
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 5678999999994332 36899999999999999966 553 379999999999999999999999 7
Q ss_pred cccCeEEEEEEcccCCCC
Q 013270 266 MFEGHQLQCQKAAEGKNR 283 (446)
Q Consensus 266 ~~~Gr~l~v~~a~~~~~~ 283 (446)
.|+||.|+|.|+.++...
T Consensus 88 ~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp EETTEECEEEECCSCCCS
T ss_pred EECCcEEEEEEeCCCCCc
Confidence 899999999999876544
No 351
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=6e-14 Score=114.64 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=67.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccce-EEEEEccHHHHHHHHHcCCCc-ccC--ccceee
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGF-AFIVFKTRKAAVKALKNPQRK-VNN--RMASCQ 180 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~-afV~f~~~~~A~~Al~~~~~~-~~g--~~i~v~ 180 (446)
.-.+|||+||++.+|+++|+++|++||.|.+|+|+.+ .+|| |||+|.+.++|.+|++.+++. |.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3467889999999999999999999999999998764 2577 999999999999999999876 877 889999
Q ss_pred ecccCC
Q 013270 181 LASVGP 186 (446)
Q Consensus 181 ~~~~~~ 186 (446)
++....
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 986543
No 352
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.49 E-value=6.3e-14 Score=132.12 Aligned_cols=82 Identities=27% Similarity=0.431 Sum_probs=75.0
Q ss_pred ccCcceeecCCCCCcccHHHHH----HHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLR----GFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQL 272 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l 272 (446)
....++|||+|||+.+|+++|+ ++|+.||.|.+|+|++ +++++|||||+|.+.++|.+||+.+| ..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 5668999999999999999977 8999999999999875 68899999999999999999999998 77999999
Q ss_pred EEEEcccCCC
Q 013270 273 QCQKAAEGKN 282 (446)
Q Consensus 273 ~v~~a~~~~~ 282 (446)
+|.|+.....
T Consensus 83 ~v~~a~~~~~ 92 (282)
T 3pgw_A 83 RIQYAKTDSD 92 (282)
T ss_pred EEEEeccCcc
Confidence 9999976553
No 353
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=3.8e-14 Score=112.48 Aligned_cols=82 Identities=13% Similarity=0.212 Sum_probs=70.8
Q ss_pred cCcceeecCCC--CCcc--------cHHHHHHHhcccCCeeEEEEeecCCC--CCceeEEEEEeCCHHHHHHHHHhCC-C
Q 013270 199 QGERKIYVSNV--PRDV--------EKEKLRGFFERFGEIETGPIGFDITT--GKSRGFAIFVYKTVEGARKALEEPQ-K 265 (446)
Q Consensus 199 ~~~~~l~V~nL--p~~~--------te~~L~~~F~~~G~V~~v~i~~d~~~--g~~kG~afV~F~~~~~A~~Ai~~~~-~ 265 (446)
.++++|.|.|+ +..+ .++||++.|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|+..|| .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45778999998 3333 45799999999999999999998754 4689999999999999999999999 7
Q ss_pred cccCeEEEEEEcccC
Q 013270 266 MFEGHQLQCQKAAEG 280 (446)
Q Consensus 266 ~~~Gr~l~v~~a~~~ 280 (446)
.|+||.|+|.|+...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 899999999998653
No 354
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=7.2e-14 Score=114.03 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=67.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC-cccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR-KVNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~-~~~g~~i~v~~ 181 (446)
....++|||+|| ++|+++|+++|+.||.|.+|+|. +++|||||+|.+.++|.+||..+++ .+.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346799999996 79999999999999999999985 5789999999999999999988765 49999999999
Q ss_pred cccCC
Q 013270 182 ASVGP 186 (446)
Q Consensus 182 ~~~~~ 186 (446)
+....
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 87543
No 355
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1e-13 Score=112.07 Aligned_cols=81 Identities=12% Similarity=0.159 Sum_probs=70.9
Q ss_pred cCcceeecCCCC--Cc---ccHHHHHHHhcccCCeeEEEEeecCC----CCCceeEEEEEeCCHHHHHHHHHhCC-Cccc
Q 013270 199 QGERKIYVSNVP--RD---VEKEKLRGFFERFGEIETGPIGFDIT----TGKSRGFAIFVYKTVEGARKALEEPQ-KMFE 268 (446)
Q Consensus 199 ~~~~~l~V~nLp--~~---~te~~L~~~F~~~G~V~~v~i~~d~~----~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~ 268 (446)
.++++|+|.|+- .+ -.++||++.|++||.|.+|+|++++. +++++||+||+|.+.++|.+|+..|| ..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 467899999983 22 24789999999999999999999864 46788999999999999999999999 8899
Q ss_pred CeEEEEEEccc
Q 013270 269 GHQLQCQKAAE 279 (446)
Q Consensus 269 Gr~l~v~~a~~ 279 (446)
||.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999864
No 356
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=2.6e-13 Score=110.42 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=64.1
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccce-EEEEEccHHHHHHHHHcCCCc-ccC--ccceeeec
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGF-AFIVFKTRKAAVKALKNPQRK-VNN--RMASCQLA 182 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~-afV~f~~~~~A~~Al~~~~~~-~~g--~~i~v~~~ 182 (446)
..|||+||++.+|+++|+++|++||.|.+|+|+. + .|| |||+|.+.++|..|++.|++. |.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4578999999999999999999999999999965 2 286 999999999999999998765 877 68999988
Q ss_pred ccCC
Q 013270 183 SVGP 186 (446)
Q Consensus 183 ~~~~ 186 (446)
....
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 6443
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=8.4e-14 Score=126.19 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=68.8
Q ss_pred CCCCCeEEEeCCCCCC---------CHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-c
Q 013270 103 DVSQRKIFVHGLGWDT---------TQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-V 172 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~ 172 (446)
....++|||+||+.++ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|+.|++.|++. |
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5568999999999998 7999999999999999999984 4799999999999999999998755 7
Q ss_pred ------------cCccceeeecccCCC
Q 013270 173 ------------NNRMASCQLASVGPT 187 (446)
Q Consensus 173 ------------~g~~i~v~~~~~~~~ 187 (446)
.|+.|.|.|+...+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999976544
No 358
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=4.4e-14 Score=111.90 Aligned_cols=71 Identities=17% Similarity=0.358 Sum_probs=63.1
Q ss_pred cCCCCCcccHHHHHHHh------------cccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEE
Q 013270 206 VSNVPRDVEKEKLRGFF------------ERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQL 272 (446)
Q Consensus 206 V~nLp~~~te~~L~~~F------------~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l 272 (446)
+.||++.+++++|+++| ++||.|.+|+|+++. +++++|||||+|.+.++|.+|+..|| ..|+||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888887777666 999999999999985 58999999999999999999999999 78999999
Q ss_pred EEEEc
Q 013270 273 QCQKA 277 (446)
Q Consensus 273 ~v~~a 277 (446)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 359
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.44 E-value=1.1e-13 Score=126.51 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=73.3
Q ss_pred ccCcceeecCCCCC-cccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEE
Q 013270 198 AQGERKIYVSNVPR-DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQ 275 (446)
Q Consensus 198 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~ 275 (446)
....++|||+|||+ .+++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+|++.++ ..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999999885 8999999999999999999888 78999999999
Q ss_pred EcccCC
Q 013270 276 KAAEGK 281 (446)
Q Consensus 276 ~a~~~~ 281 (446)
++....
T Consensus 106 ~a~~~~ 111 (229)
T 2adc_A 106 LSKHQN 111 (229)
T ss_dssp CCSCCC
T ss_pred EecCcc
Confidence 998654
No 360
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.41 E-value=2.3e-13 Score=118.61 Aligned_cols=77 Identities=27% Similarity=0.402 Sum_probs=68.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeee
Q 013270 103 DVSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQL 181 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~ 181 (446)
....++|||+|||.++|+++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|+..+++. +.|+.|.|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3456899999999999999999999999988766 468999999999999999999999987755 9999999999
Q ss_pred ccc
Q 013270 182 ASV 184 (446)
Q Consensus 182 ~~~ 184 (446)
+..
T Consensus 171 a~~ 173 (175)
T 1fje_B 171 TGE 173 (175)
T ss_dssp CSS
T ss_pred cCC
Confidence 863
No 361
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.41 E-value=2.1e-13 Score=121.47 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=71.9
Q ss_pred CcceeecCCCCC-cccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEc
Q 013270 200 GERKIYVSNVPR-DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKA 277 (446)
Q Consensus 200 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a 277 (446)
..++|||+|||+ .+++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+|+..++ ..|.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999999874 8899999999999999999888 7799999999999
Q ss_pred ccCCC
Q 013270 278 AEGKN 282 (446)
Q Consensus 278 ~~~~~ 282 (446)
.....
T Consensus 77 ~~~~~ 81 (198)
T 1qm9_A 77 KHQNV 81 (198)
T ss_dssp CCCSC
T ss_pred cCCCc
Confidence 87643
No 362
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=5.3e-13 Score=124.32 Aligned_cols=78 Identities=27% Similarity=0.450 Sum_probs=71.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~ 276 (446)
....++|||+|||+++|+++|+++|+.||.|..|+|.++ +|||||+|.+.++|.+|+..++ ..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 566789999999999999999999999999999999655 8999999999999999999888 789999999999
Q ss_pred cccCC
Q 013270 277 AAEGK 281 (446)
Q Consensus 277 a~~~~ 281 (446)
+.+..
T Consensus 93 a~~~~ 97 (261)
T 3sde_A 93 ATHGA 97 (261)
T ss_dssp CCCSS
T ss_pred cccCC
Confidence 97643
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1e-12 Score=102.87 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=60.1
Q ss_pred CcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEEEEEEcccCCCCC
Q 013270 211 RDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQLQCQKAAEGKNRT 284 (446)
Q Consensus 211 ~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l~v~~a~~~~~~~ 284 (446)
..+++++|+++|++||.|.+|+|+ ++++|||||+|.+.++|..|+..++ .+.|++|+|.|+..+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCCeEEEEEccCCCCCC
Confidence 568999999999999999999997 4679999999999999999999865 3679999999998776543
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.4e-12 Score=103.52 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=67.4
Q ss_pred CCCCCCeEEEeCCCCCCC-----------HHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCC
Q 013270 102 RDVSQRKIFVHGLGWDTT-----------QESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQR 170 (446)
Q Consensus 102 ~~~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~ 170 (446)
....+++|+|+||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+..+++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 455689999999954332 5899999999999999965 554 3899999999999999999998876
Q ss_pred c-ccCccceeeecccC
Q 013270 171 K-VNNRMASCQLASVG 185 (446)
Q Consensus 171 ~-~~g~~i~v~~~~~~ 185 (446)
. |.|+.|.|.++...
T Consensus 87 ~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWFGGRQITAQAWDGT 102 (112)
T ss_dssp CEETTEECEEEECCSC
T ss_pred CEECCcEEEEEEeCCC
Confidence 5 99999999998643
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.36 E-value=9e-13 Score=104.48 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=69.0
Q ss_pred CCCCeEEEeCC--CCCCC--------HHHHHHhhccCCCeeEEEEEeeCCC--CCccceEEEEEccHHHHHHHHHcCCCc
Q 013270 104 VSQRKIFVHGL--GWDTT--------QESLLSAFGGSGEIEECKLVIDKVT--GKAKGFAFIVFKTRKAAVKALKNPQRK 171 (446)
Q Consensus 104 ~~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~v~~v~i~~~~~~--g~~~G~afV~f~~~~~A~~Al~~~~~~ 171 (446)
.+++.|.|.|+ |.++. ++||++.|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|+..||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35789999998 44443 3689999999999999999998754 468999999999999999999999866
Q ss_pred -ccCccceeeecc
Q 013270 172 -VNNRMASCQLAS 183 (446)
Q Consensus 172 -~~g~~i~v~~~~ 183 (446)
+.||.|.|.+..
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 999999999864
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=1.9e-12 Score=104.63 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=68.9
Q ss_pred CCCeEEEeCCC--CCC---CHHHHHHhhccCCCeeEEEEEeeCC----CCCccceEEEEEccHHHHHHHHHcCCCc-ccC
Q 013270 105 SQRKIFVHGLG--WDT---TQESLLSAFGGSGEIEECKLVIDKV----TGKAKGFAFIVFKTRKAAVKALKNPQRK-VNN 174 (446)
Q Consensus 105 ~~~~l~V~nLp--~~~---te~~L~~~F~~~G~v~~v~i~~~~~----~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g 174 (446)
.+++|+|+|+- .++ .++||++.|++||.|.+|+|++++. +++++||+||+|.+.++|.+|+..|++. |.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57999999994 222 3689999999999999999999864 4678899999999999999999999866 999
Q ss_pred ccceeeecc
Q 013270 175 RMASCQLAS 183 (446)
Q Consensus 175 ~~i~v~~~~ 183 (446)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999864
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-11 Score=96.14 Aligned_cols=76 Identities=22% Similarity=0.170 Sum_probs=64.1
Q ss_pred CCeEEEeCCC-------CCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccce
Q 013270 106 QRKIFVHGLG-------WDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMAS 178 (446)
Q Consensus 106 ~~~l~V~nLp-------~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~ 178 (446)
.++|-|.-.. .++|+++|+++|++||.|.+|+|+ ++++|||||+|.+.++|..|++.++. +.++.|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~-~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG-LVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB-CSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC-CCCCeEE
Confidence 5667776654 458999999999999999999997 46899999999999999999999543 7899999
Q ss_pred eeecccCCC
Q 013270 179 CQLASVGPT 187 (446)
Q Consensus 179 v~~~~~~~~ 187 (446)
|.|+...+.
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999875543
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.32 E-value=3.4e-13 Score=106.75 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=61.8
Q ss_pred EeCCCCCCCHHHHHHhh------------ccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccc
Q 013270 111 VHGLGWDTTQESLLSAF------------GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMA 177 (446)
Q Consensus 111 V~nLp~~~te~~L~~~F------------~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i 177 (446)
+.|||+++++++|++.| ++||.|.+|+|+++. +++++|||||+|.+.++|.+|+..+++. +.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777887777666 999999999999986 5899999999999999999999988765 999999
Q ss_pred eeeec
Q 013270 178 SCQLA 182 (446)
Q Consensus 178 ~v~~~ 182 (446)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=5.2e-12 Score=120.61 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=65.1
Q ss_pred ccCcceeecCC--CCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Ccc---cCe-
Q 013270 198 AQGERKIYVSN--VPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMF---EGH- 270 (446)
Q Consensus 198 ~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~---~Gr- 270 (446)
..++++|||+| |++.+|+++|+++|++||+|++|++.. +||||||+|.+.++|.+||+.|| ..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 56778999999 589999999999999999999988754 48999999999999999999999 544 355
Q ss_pred -EEEEEEcc
Q 013270 271 -QLQCQKAA 278 (446)
Q Consensus 271 -~l~v~~a~ 278 (446)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 68888884
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.27 E-value=7.5e-12 Score=100.39 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=66.4
Q ss_pred ccCcceeecCCCCC----------cccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Cc
Q 013270 198 AQGERKIYVSNVPR----------DVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KM 266 (446)
Q Consensus 198 ~~~~~~l~V~nLp~----------~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~ 266 (446)
..++++|.|.|+=. .-.++||++.|++||.|.+|.|.++. ++||+||+|.+.++|.+|+..|| ..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567888888721 22457999999999999999997652 58999999999999999999999 78
Q ss_pred ccCeEEEEEEcccC
Q 013270 267 FEGHQLQCQKAAEG 280 (446)
Q Consensus 267 ~~Gr~l~v~~a~~~ 280 (446)
|+||.|+|.|+...
T Consensus 80 f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 80 FAGKMITAAYVPLP 93 (114)
T ss_dssp ETTEECEEEEECHH
T ss_pred ECCEEEEEEEEcHH
Confidence 99999999998654
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.18 E-value=3.4e-11 Score=114.99 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=61.5
Q ss_pred CCCCCeEEEeC--CCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-c---cCc-
Q 013270 103 DVSQRKIFVHG--LGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-V---NNR- 175 (446)
Q Consensus 103 ~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~---~g~- 175 (446)
...+++|||+| |++.+|+++|+++|++||+|.+|++.+ +||||||+|.+.++|++|++.+|+. + .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45679999999 588999999999999999999987742 5799999999999999999999865 4 345
Q ss_pred -cceeeec
Q 013270 176 -MASCQLA 182 (446)
Q Consensus 176 -~i~v~~~ 182 (446)
.|.+.++
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 4555554
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.1e-10 Score=91.97 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=67.0
Q ss_pred ccCcceeecCCCCCc-ccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCC-HHHHHHHHHhCC---CcccCeEE
Q 013270 198 AQGERKIYVSNVPRD-VEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKT-VEGARKALEEPQ---KMFEGHQL 272 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~-~~~A~~Ai~~~~---~~~~Gr~l 272 (446)
....+.|||+||++. ++.++|+++|+.||.|.+|.+.++.. .|||+|.+ ..+|..|+..++ ..|+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 567899999999999 99999999999999999999988843 59999999 899999999996 46999988
Q ss_pred EEEEcc
Q 013270 273 QCQKAA 278 (446)
Q Consensus 273 ~v~~a~ 278 (446)
++....
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887653
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.08 E-value=2.2e-10 Score=91.79 Aligned_cols=76 Identities=11% Similarity=0.181 Sum_probs=63.5
Q ss_pred CCCCeEEEeCCCCCCC----------HHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-c
Q 013270 104 VSQRKIFVHGLGWDTT----------QESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-V 172 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~t----------e~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~ 172 (446)
..++.|.|.|+=.... ++||++.|++||.|.+|.|.++. .+||+||+|.+.++|.+|+..|++. |
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3578899999843222 35789999999999999996552 5899999999999999999998866 9
Q ss_pred cCccceeeecc
Q 013270 173 NNRMASCQLAS 183 (446)
Q Consensus 173 ~g~~i~v~~~~ 183 (446)
.||.|.|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999864
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=4.7e-10 Score=84.18 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=61.2
Q ss_pred ccCcceeecCCCC----CcccH----HHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Cccc
Q 013270 198 AQGERKIYVSNVP----RDVEK----EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFE 268 (446)
Q Consensus 198 ~~~~~~l~V~nLp----~~~te----~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~ 268 (446)
.++.-+|+|..++ .++.+ .+|.+.|++||+|..++|..|+ +||+|.+.++|.+||. || ..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 3455677777665 23333 6799999999999999999873 8999999999999999 87 7899
Q ss_pred CeEEEEEEcccC
Q 013270 269 GHQLQCQKAAEG 280 (446)
Q Consensus 269 Gr~l~v~~a~~~ 280 (446)
||.|+|+++++.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998764
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1e-09 Score=88.01 Aligned_cols=74 Identities=23% Similarity=0.225 Sum_probs=63.3
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEcc-HHHHHHHHHcCC---CcccCccc
Q 013270 103 DVSQRKIFVHGLGWD-TTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKT-RKAAVKALKNPQ---RKVNNRMA 177 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~-~~~A~~Al~~~~---~~~~g~~i 177 (446)
-...+.|||+||+++ +++++|+++|+.||+|..|.++++.. .|||.|.+ +++|..|+..++ ..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 346799999999999 99999999999999999999987753 59999999 899999999873 34888777
Q ss_pred eeeec
Q 013270 178 SCQLA 182 (446)
Q Consensus 178 ~v~~~ 182 (446)
.+...
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66543
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.86 E-value=3.7e-09 Score=95.68 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=60.9
Q ss_pred cccHHHHHHHhcccCCeeEEEEeecC----CCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEEEEccc
Q 013270 212 DVEKEKLRGFFERFGEIETGPIGFDI----TTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQCQKAAE 279 (446)
Q Consensus 212 ~~te~~L~~~F~~~G~V~~v~i~~d~----~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v~~a~~ 279 (446)
.-.+++|++.|++||.|.++.|+++. .+++++|++||+|.+.++|.+|+..|| ..|+||.|.|.|+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34678999999999999999999654 345899999999999999999999999 789999999999864
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=2.1e-09 Score=80.95 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=61.3
Q ss_pred ccCcceeecCCCCCc-----ccH----HHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-Ccc
Q 013270 198 AQGERKIYVSNVPRD-----VEK----EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMF 267 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~ 267 (446)
.++.-+|+|..++.. +.+ .+|.+.|+.||+|..++|..|+ +||+|.+.++|.+||. || ..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 456678889887632 322 5689999999999999999883 9999999999999999 87 889
Q ss_pred cCeEEEEEEccc
Q 013270 268 EGHQLQCQKAAE 279 (446)
Q Consensus 268 ~Gr~l~v~~a~~ 279 (446)
+||.|+|++..+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999998643
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=9.3e-09 Score=77.12 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=60.8
Q ss_pred CCCCeEEEeCCCC----CCCH----HHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCc
Q 013270 104 VSQRKIFVHGLGW----DTTQ----ESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNR 175 (446)
Q Consensus 104 ~~~~~l~V~nLp~----~~te----~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~ 175 (446)
+..-||+|.-++. ++-+ .+|.+.|+.||.|..++++.|+ +||+|.+.++|.+||...+..+.||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 3457888888772 3434 6789999999999999998764 8999999999999999444559999
Q ss_pred cceeeecccC
Q 013270 176 MASCQLASVG 185 (446)
Q Consensus 176 ~i~v~~~~~~ 185 (446)
.|+|..++..
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999987644
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.60 E-value=6.1e-08 Score=87.57 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=58.4
Q ss_pred CCHHHHHHhhccCCCeeEEEEEeeCCC----CCccceEEEEEccHHHHHHHHHcCCCc-ccCccceeeecc
Q 013270 118 TTQESLLSAFGGSGEIEECKLVIDKVT----GKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASCQLAS 183 (446)
Q Consensus 118 ~te~~L~~~F~~~G~v~~v~i~~~~~~----g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v~~~~ 183 (446)
-.+++|++.|++||.|.+|.|.++..+ ++++|++||+|.+.++|.+|+..+++. +.||.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 456889999999999999999976543 489999999999999999999999866 999999998864
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=2.4e-08 Score=75.24 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=60.2
Q ss_pred CCCCCeEEEeCCCCC-----CCH----HHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCccc
Q 013270 103 DVSQRKIFVHGLGWD-----TTQ----ESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVN 173 (446)
Q Consensus 103 ~~~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~ 173 (446)
-+..-||+|.-++.+ +-+ .+|.+.|+.||.|..++++.|+ +||+|.+.++|.+||...+..+.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC
Confidence 345689999988743 333 5688999999999999999875 99999999999999994445699
Q ss_pred Cccceeeecc
Q 013270 174 NRMASCQLAS 183 (446)
Q Consensus 174 g~~i~v~~~~ 183 (446)
||.|+|.+.+
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998743
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.2e-06 Score=66.85 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=76.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhcc----C-CCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccCccce
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGG----S-GEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNNRMAS 178 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~----~-G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g~~i~ 178 (446)
...++|.|.|||.+++++.|.-+|++ - |.|.++.... +-|+|+|.+.+.|++.|+.-.+.|++..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 34689999999999999999999987 2 5888887743 369999999999999999988999999999
Q ss_pred eeecccCCCCCCCccCcccccCcceeecCCCCCccc
Q 013270 179 CQLASVGPTGPGVKEQGAAAQGERKIYVSNVPRDVE 214 (446)
Q Consensus 179 v~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 214 (446)
|.... .....+|++.+|+..++
T Consensus 78 V~P~~--------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAP--------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECC--------------CCCCCCCCCCSCCCCCC
T ss_pred EEcCC--------------CCCcceEeeecCCCCCC
Confidence 98754 55677899999998775
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=5.5e-07 Score=69.07 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=67.2
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhccc-----CCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERF-----GEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQ 271 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~ 271 (446)
....++|-|-|||..+++..|+.+.+++ |.|..|.+..| .+=|+|+|.+...|.+|.-.++ ..|.||+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3457889999999999999999999999 99999999988 6779999999999999999998 6799999
Q ss_pred EEEEEc
Q 013270 272 LQCQKA 277 (446)
Q Consensus 272 l~v~~a 277 (446)
|+|.-.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 999754
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=1.8e-05 Score=60.74 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=64.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccC-----CCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCccc
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGS-----GEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMA 177 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i 177 (446)
...++|=|-|||..+++..|+.+++.+ |.|+.|.++.|. +=|+|+|.+..+|-+|.-.+++. |.||.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 347999999999999999999999999 999999998774 35999999999999998766654 999999
Q ss_pred eeeec
Q 013270 178 SCQLA 182 (446)
Q Consensus 178 ~v~~~ 182 (446)
+|...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98754
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.00019 Score=54.74 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=67.8
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcc-----cCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccCeEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFER-----FGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEGHQL 272 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~-----~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~Gr~l 272 (446)
....++|.|.|||..++++.|.-+|+. -|+|..+.... +-|+|+|.+.+.|++.|+.-.+.|++..|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 345689999999999999999999987 26888887742 46899999999999999988889999999
Q ss_pred EEEEcccCCCCCC
Q 013270 273 QCQKAAEGKNRTS 285 (446)
Q Consensus 273 ~v~~a~~~~~~~~ 285 (446)
.|....+....+-
T Consensus 77 sV~P~~~~~~~r~ 89 (104)
T 2dhx_A 77 SLRPAPPRAPARL 89 (104)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEcCCCCCcceE
Confidence 9988877765543
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=0.00015 Score=55.49 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=62.6
Q ss_pred cceeecCCCCCcc-c----HHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC-CcccCeEEEE
Q 013270 201 ERKIYVSNVPRDV-E----KEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ-KMFEGHQLQC 274 (446)
Q Consensus 201 ~~~l~V~nLp~~~-t----e~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~-~~~~Gr~l~v 274 (446)
.++|+|.||+..+ . .+.++++|..|+++.....++.- .-..|.|.+.++|.+|...|+ ..++|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5689999998765 2 26789999999999887777652 257899999999999999999 6799999999
Q ss_pred EEcccCC
Q 013270 275 QKAAEGK 281 (446)
Q Consensus 275 ~~a~~~~ 281 (446)
-|+.+-.
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9997443
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.33 E-value=0.0007 Score=51.83 Aligned_cols=72 Identities=11% Similarity=-0.003 Sum_probs=60.6
Q ss_pred CCeEEEeCCCCCC-CH----HHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCc-ccCcccee
Q 013270 106 QRKIFVHGLGWDT-TQ----ESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRK-VNNRMASC 179 (446)
Q Consensus 106 ~~~l~V~nLp~~~-te----~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~-~~g~~i~v 179 (446)
.++|+|.||+.++ +. +.++++|..|+++......+.- .=..|.|.++++|.+|...+++. +.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5899999999875 32 5678999999999887776542 24789999999999999999877 99999999
Q ss_pred eecc
Q 013270 180 QLAS 183 (446)
Q Consensus 180 ~~~~ 183 (446)
.++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9987
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.06 E-value=0.0015 Score=49.19 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=45.1
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcC
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~ 168 (446)
..++| ++|.++...||..+|+.||.| .|+.+-|. .|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 44555 999999999999999999955 57777664 7999999999999999864
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.04 E-value=0.002 Score=48.45 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=52.7
Q ss_pred ceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCC--ceeEEEEEeCCHHHHHHHHHhCC
Q 013270 202 RKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGK--SRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 202 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~--~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
++|.|++||..+|++++.+.++....+.....+....+.+ .-..|+|.|.+.+++..-.+.++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 5789999999999999999999999888877766543332 24569999999999999988887
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.87 E-value=0.003 Score=47.49 Aligned_cols=65 Identities=15% Similarity=0.096 Sum_probs=51.1
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCC--ccceEEEEEccHHHHHHHHHcCCCc
Q 013270 107 RKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGK--AKGFAFIVFKTRKAAVKALKNPQRK 171 (446)
Q Consensus 107 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~--~~G~afV~f~~~~~A~~Al~~~~~~ 171 (446)
++|-|++||+.+|++++.+.++.+..+.....+..+.+.. .-.-|||.|.+.+++....+..++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 5799999999999999999999988776666655443322 2245999999999999998886544
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.86 E-value=0.0044 Score=48.78 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=59.6
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCCCcccC-eEEEEEE
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQKMFEG-HQLQCQK 276 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~~~~~G-r~l~v~~ 276 (446)
....+.|.|-+.|... -..|...|++||+|.+.... ....+..|+|.+..+|.+||......|+| -.|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 4557889999999885 55677899999999987762 12568999999999999999997777875 6777877
Q ss_pred cc
Q 013270 277 AA 278 (446)
Q Consensus 277 a~ 278 (446)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.86 E-value=0.0026 Score=47.86 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=47.7
Q ss_pred ccCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC
Q 013270 198 AQGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263 (446)
Q Consensus 198 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~ 263 (446)
....+.++| ++|.++...||.++|+.||.| .|+.+-|. .|||.|.+++.|..|+..+
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 445667777 999999999999999999955 46666552 7999999999999999876
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.81 E-value=0.0019 Score=48.76 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=44.3
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcC
Q 013270 108 KIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~ 168 (446)
.++| ++|.++...||..+|+.||. ..|+.+-|. .|||.|.+++.|..|+..+
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 4455 99999999999999999994 457777664 7999999999999999964
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.61 E-value=0.0047 Score=48.64 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=57.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCCCcccC-ccceeeec
Q 013270 104 VSQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQRKVNN-RMASCQLA 182 (446)
Q Consensus 104 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~~~~~g-~~i~v~~~ 182 (446)
...+.|.|-+.|... ...|...|++||+|.+.... + ..-+-.|.|.+..+|++||.+++..+.+ -.|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 346899999999984 67788899999999988761 1 2248999999999999999997777775 45556553
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.35 E-value=0.0027 Score=47.93 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=46.6
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
..+.++| ++|.++...||.++|+.||.| .|+.+-|. .|||.|.+++.|..|+..+.
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3456777 999999999999999999944 46666552 79999999999999999763
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.33 E-value=0.0056 Score=48.86 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=56.9
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeE-EEEeecCC--------CC-----CceeEEEEEeCCHHHHHHHHHhCCC
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIET-GPIGFDIT--------TG-----KSRGFAIFVYKTVEGARKALEEPQK 265 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~i~~d~~--------~g-----~~kG~afV~F~~~~~A~~Ai~~~~~ 265 (446)
....|.|-+.|...+. .+.+.|++||.|.+ +.+.++.. .. ....+..|+|++..+|.+||.....
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 4556788888776665 45588999999976 22221100 00 1246789999999999999999989
Q ss_pred cccCeEEEEEEccc
Q 013270 266 MFEGHQLQCQKAAE 279 (446)
Q Consensus 266 ~~~Gr~l~v~~a~~ 279 (446)
.|+|..|-|....+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999999998854
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.84 E-value=0.016 Score=43.77 Aligned_cols=65 Identities=8% Similarity=-0.026 Sum_probs=48.5
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCC--ceeEEEEEeCCHHHHHHHHHhCC
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGK--SRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~--~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
.+.+|.|+.||..+|++++.+.++..-++.....+....+.+ .-..|+|.|.+.++...-.+..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 356899999999999999988888766655544433222221 12458999999999999999887
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.55 E-value=0.0052 Score=60.55 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=44.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcC
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNP 168 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~ 168 (446)
..|+|||. .|..+++.+|.++|+.||+|.++.+-.++ | -||.|+|.+.+++..++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhcc
Confidence 36999998 79999999999999999999999876543 3 59999999999999887764
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.53 E-value=0.019 Score=43.31 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=46.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCC--CccceEEEEEccHHHHHHHHHcCCCc
Q 013270 105 SQRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTG--KAKGFAFIVFKTRKAAVKALKNPQRK 171 (446)
Q Consensus 105 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g--~~~G~afV~f~~~~~A~~Al~~~~~~ 171 (446)
.+-+|.|+.||+.+|++++.+.++.+-.+.....+..+.+- ..-.-|||.|.+.+++....+..++.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 46789999999999999998888775443222211111111 11235899999999999999987654
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.13 E-value=0.019 Score=45.79 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=54.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeE-EEEEee------------CCCC-CccceEEEEEccHHHHHHHHHcCCCc
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEE-CKLVID------------KVTG-KAKGFAFIVFKTRKAAVKALKNPQRK 171 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~------------~~~g-~~~G~afV~f~~~~~A~~Al~~~~~~ 171 (446)
...|.|-+.|.+. ...+-+.|++||.|.+ +.+.++ +... ....+..|+|.+..+|.+||...+..
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 4678888997764 4567788999999876 221110 0000 12357799999999999999999888
Q ss_pred ccCccceeeec
Q 013270 172 VNNRMASCQLA 182 (446)
Q Consensus 172 ~~g~~i~v~~~ 182 (446)
|.|..|-|.+.
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99988877764
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.04 E-value=0.0092 Score=58.82 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=43.9
Q ss_pred cCcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC
Q 013270 199 QGERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP 263 (446)
Q Consensus 199 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~ 263 (446)
...+.|||. .+..+++.+|.++|++||.|.++..-.+. .-||.|+|.+.+++..++...
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 346899997 79999999999999999999998775542 369999999999999877653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.17 E-value=1.1 Score=44.82 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=44.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHcCC
Q 013270 106 QRKIFVHGLGWDTTQESLLSAFGGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKNPQ 169 (446)
Q Consensus 106 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~~~ 169 (446)
...++|+ +|..+...+|.++|+.||.| +|+.+.|. .|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4566666 99999999999999999954 56665443 79999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.78 E-value=3 Score=41.66 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=45.6
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
....++|+ +|..+...+|.++|+.||.| +|+.+-| ..|||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 45677776 88899999999999999954 5655443 369999999999999998875
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=55.55 E-value=40 Score=24.43 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=52.1
Q ss_pred CcceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhC-CC-------cccCeE
Q 013270 200 GERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEP-QK-------MFEGHQ 271 (446)
Q Consensus 200 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~-~~-------~~~Gr~ 271 (446)
..+-|-|-|+|..+-..++.-.....|---.|..+ .|-|.|.|.+.++-..||..+ |+ ++.|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 45677888999999988887777777876666654 467999999999999999775 21 356666
Q ss_pred EEEEE
Q 013270 272 LQCQK 276 (446)
Q Consensus 272 l~v~~ 276 (446)
..|--
T Consensus 83 cdvis 87 (129)
T 4eyt_A 83 CDVIS 87 (129)
T ss_dssp EEEEC
T ss_pred eeeee
Confidence 66543
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=40.61 E-value=45 Score=27.72 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=36.3
Q ss_pred eEEEeCCCC-C--------CCHHHHHHhh--ccCCCeeEEEEEeeCCCCCccceEEEEEccHHHH
Q 013270 108 KIFVHGLGW-D--------TTQESLLSAF--GGSGEIEECKLVIDKVTGKAKGFAFIVFKTRKAA 161 (446)
Q Consensus 108 ~l~V~nLp~-~--------~te~~L~~~F--~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~A 161 (446)
.+.|-|+|. . ....+|++.| ..|.++. |+.+.++ .-++|++.|.|.+.-.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHH
Confidence 466778876 2 3457899977 9998865 6666664 24789999999765443
No 405
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=40.27 E-value=42 Score=18.23 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 013270 378 SSVLGSFG 385 (446)
Q Consensus 378 ~~~~g~~g 385 (446)
++.||.-|
T Consensus 12 pgvmgfpg 19 (31)
T 4gyx_A 12 PGVMGFPG 19 (31)
T ss_dssp CCCCCCCC
T ss_pred CccccCCC
Confidence 34444333
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.84 E-value=85 Score=22.75 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=40.9
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHc
Q 013270 108 KIFVHGLGWDTTQESLLSAFGG-SG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~ 167 (446)
+-|+-.+..+.|..+|+..++. |+ .|..|+.+..+ .|. --|||.+....+|......
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSC--EEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCc--eEEEEEcCCCCcHHHHHHh
Confidence 3455557889999999999887 66 77888877654 221 2499999887777665444
No 407
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=30.79 E-value=1.2e+02 Score=20.21 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=44.5
Q ss_pred cceeecCCCCCcccHHHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q 013270 201 ERKIYVSNVPRDVEKEKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYKTVEGARKALEEPQ 264 (446)
Q Consensus 201 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~~A~~Ai~~~~ 264 (446)
..++.|.++.-.--...|.+.+.. ..|..+.+-.. .+.+.|+|.+.+....+|+.+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 356888888877788889999999 88888877433 6778899987777778887764
No 408
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=30.35 E-value=92 Score=22.71 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.1
Q ss_pred CccceEEEEEccHHHHHHHHHcCC
Q 013270 146 KAKGFAFIVFKTRKAAVKALKNPQ 169 (446)
Q Consensus 146 ~~~G~afV~f~~~~~A~~Al~~~~ 169 (446)
...||.||++...++...++....
T Consensus 48 ~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 48 SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred ccCCEEEEEEecchhHHHHHHCCC
Confidence 378999999999998888877653
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=27.68 E-value=84 Score=26.06 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=34.6
Q ss_pred ceeecCCCCCc---------ccHHHHHHHh--cccCCeeEEEEeecCCCCCceeEEEEEeCCHH
Q 013270 202 RKIYVSNVPRD---------VEKEKLRGFF--ERFGEIETGPIGFDITTGKSRGFAIFVYKTVE 254 (446)
Q Consensus 202 ~~l~V~nLp~~---------~te~~L~~~F--~~~G~V~~v~i~~d~~~g~~kG~afV~F~~~~ 254 (446)
-.+.|-|+|.. .+..+|++.| +.|..+. |+.+.++ ..+.|++.|.|.+.-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCCh
Confidence 34556677651 3457899977 9998866 5555653 457899999996643
No 410
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.18 E-value=10 Score=30.86 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=17.6
Q ss_pred HHHHHHhcccCCeeEEEEeecCCCCCceeEEEEEeC
Q 013270 216 EKLRGFFERFGEIETGPIGFDITTGKSRGFAIFVYK 251 (446)
Q Consensus 216 ~~L~~~F~~~G~V~~v~i~~d~~~g~~kG~afV~F~ 251 (446)
+|+.++|...|.|+.... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 456677888888875322 2899999975
No 411
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.61 E-value=81 Score=22.92 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=21.5
Q ss_pred CeeEEEEeecCCCCCceeEEEEEeCC
Q 013270 227 EIETGPIGFDITTGKSRGFAIFVYKT 252 (446)
Q Consensus 227 ~V~~v~i~~d~~~g~~kG~afV~F~~ 252 (446)
.|++|+|..-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887665678999999999986
No 412
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=23.89 E-value=94 Score=23.24 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=21.5
Q ss_pred CeeEEEEeecCCCCCceeEEEEEeCC
Q 013270 227 EIETGPIGFDITTGKSRGFAIFVYKT 252 (446)
Q Consensus 227 ~V~~v~i~~d~~~g~~kG~afV~F~~ 252 (446)
.|++|+|.+-...|+-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887665668999999999986
No 413
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.57 E-value=1.2e+02 Score=21.86 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=40.2
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc-CC-CeeEEEEEeeCCCCCccceEEEEEccHHHHHHHHHc
Q 013270 108 KIFVHGLGWDTTQESLLSAFGG-SG-EIEECKLVIDKVTGKAKGFAFIVFKTRKAAVKALKN 167 (446)
Q Consensus 108 ~l~V~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~~ 167 (446)
+-|+-.+..++|..+|++.++. |+ .|..|+.+.-+ .+ .--|||.+....+|......
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~--~KKA~VtL~~g~~aid~~~k 81 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DG--EKKAVVRLSEDDDAQEVASR 81 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHHHTT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CC--ceEEEEEECCCCcHHHHHHh
Confidence 3455567889999999998887 56 78888877654 22 22499999877765554443
No 414
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.80 E-value=1e+02 Score=23.25 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=21.2
Q ss_pred CeeEEEEeecCCCCCceeEEEEEeCC
Q 013270 227 EIETGPIGFDITTGKSRGFAIFVYKT 252 (446)
Q Consensus 227 ~V~~v~i~~d~~~g~~kG~afV~F~~ 252 (446)
.|++|+|..-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788887665678999999999986
Done!