BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013271
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OKF|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of
3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae
pdb|3OKF|B Chain B, 2.5 Angstrom Resolution Crystal Structure Of
3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae
Length = 390
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 174/325 (53%), Positives = 216/325 (66%), Gaps = 5/325 (1%)
Query: 85 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTR-GNP 143
+ V+LG+RSYPI IG+GL +P LL + +KV++VTN+TVAPLY + L G
Sbjct: 33 ITVNLGERSYPISIGAGLFANPALLSLSAK-QKVVIVTNHTVAPLYAPAIISLLDHIGCQ 91
Query: 144 NVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 203
+ +E LPDGE YK ++T V +E R +ALGGGVIGD+ G+AAA Y R
Sbjct: 92 HALLE---LPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQR 148
Query: 204 GVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELAS 263
GV FIQIPTT+++QVDSSVGGKT +NH LGKN+IGAFYQP+ V++DTD L TLP RE A+
Sbjct: 149 GVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPKAVVIDTDCLTTLPAREFAA 208
Query: 264 GLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLR 323
G+AEVIKYG+I D+ FF+W E M L A D +A YAI R C+ KAEVV+ DEKESG+R
Sbjct: 209 GMAEVIKYGIIYDSAFFDWLEAQMEALYALDEQALTYAIARCCQIKAEVVAQDEKESGIR 268
Query: 324 ATLNLGHTFGHAIETGFGYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQA 383
A LNLGHTFGHAIE GYG WLHGE + G ID S +R+ IL++A
Sbjct: 269 ALLNLGHTFGHAIEAHMGYGNWLHGEAVSAGTVMAAKTAQLQGLIDASQFERILAILKKA 328
Query: 384 KLPTAPPDTMTVEMFKSIMAVDKKV 408
LP P+ MT F M DKKV
Sbjct: 329 HLPVRTPENMTFADFMQHMMRDKKV 353
>pdb|3CLH|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs)from
Helicobacter Pylori
pdb|3CLH|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs)from
Helicobacter Pylori
Length = 343
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 183/322 (56%), Gaps = 21/322 (6%)
Query: 87 VDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVS 146
+ L +++Y +++G + P++ K +K L+++++ VA L+L + + L +
Sbjct: 6 IPLKEKNYKVFLG----ELPEIKLK----QKALIISDSIVAGLHLPYLLERL----KALE 53
Query: 147 VENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 206
V ++ GE YKN +L ++ + A E +L+R +ALGGGVI DM G+A++ Y RG+
Sbjct: 54 VRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGID 113
Query: 207 FIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLA 266
FI IPTT++AQVD+SVGGKTGIN GKNLIG+F+QP+ V +D L TL RE +G+A
Sbjct: 114 FINIPTTLLAQVDASVGGKTGINTPYGKNLIGSFHQPKAVYMDLAFLKTLEKREFQAGVA 173
Query: 267 EVIKYGLIRDAEFFEWQEQNMHKLMARDPR-AFAYAIKRSCENKAEVVSLDEKESGLRAT 325
E+IK + D E +L +D + I +S KA+VV DEKE +RA
Sbjct: 174 EIIKMAVCFDKNLVE-------RLETKDLKDCLEEVIFQSVNIKAQVVVQDEKEQNIRAG 226
Query: 326 LNLGHTFGHAIETGFGYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQAKL 385
LN GHTFGHAIE Y ++LHGE + LG + +R+ N+L++ L
Sbjct: 227 LNYGHTFGHAIEKETDYERFLHGEAIAIGMRMANDLALSLGMLTLKEYERIENLLKKFDL 286
Query: 386 PTAPPDTMTVEMFKSIMAVDKK 407
+ ++ F + +DKK
Sbjct: 287 -IFHYKILDLQKFYERLFLDKK 307
>pdb|3QBD|A Chain A, 3-Dehydroquinate Synthase (Arob) From Mycobacterium
Tuberculosis In Complex With Nad
pdb|3QBD|B Chain B, 3-Dehydroquinate Synthase (Arob) From Mycobacterium
Tuberculosis In Complex With Nad
pdb|3QBE|A Chain A, Crystal Structure Of The 3-Dehydroquinate Synthase (Arob)
From Mycobacterium Tuberculosis
Length = 368
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 145/265 (54%), Gaps = 4/265 (1%)
Query: 144 NVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 203
V + +PD E K++ + +++ + R+ V+LGGG D+ G+AAA++LR
Sbjct: 69 GVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLR 128
Query: 204 GVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELAS 263
GVS + +PTT++ VD++VGGKTGIN GKNL+GAF+QP VLVD TL TLP E+
Sbjct: 129 GVSIVHLPTTLLGMVDAAVGGKTGINTDAGKNLVGAFHQPLAVLVDLATLQTLPRDEMIC 188
Query: 264 GLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLR 323
G+AEV+K G I D + E + + I+R+ KAEVV+ DEKES LR
Sbjct: 189 GMAEVVKAGFIADPVILDLIEADPQAALDPAGDVLPELIRRAITVKAEVVAADEKESELR 248
Query: 324 ATLNLGHTFGHAIETGFGYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQA 383
LN GHT GHAIE Y +W HG + G +DD+ +R IL
Sbjct: 249 EILNYGHTLGHAIERRERY-RWRHGAAVSVGLVFAAELARLAGRLDDATAQRHRTILSSL 307
Query: 384 KLPTA-PPDTMTVEMFKSIMAVDKK 407
LP + PD + IMA DKK
Sbjct: 308 GLPVSYDPDALP--QLLEIMAGDKK 330
>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAH|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAH|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAI|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAI|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAL|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
pdb|1XAL|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
Length = 354
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 138/246 (56%), Gaps = 8/246 (3%)
Query: 93 SYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVIL 152
+YPIY+ G + + Q + ++ + V + +K D L+ N V VI+
Sbjct: 11 NYPIYVEHGAIKYIGTYLN--QFDQSFLLIDEYVNQYFANKFDDILSYEN----VHKVII 64
Query: 153 PDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPT 212
P GE K + + + + + R +A+GGG GD G+ AA+ LRGV FIQ+PT
Sbjct: 65 PAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFIQVPT 124
Query: 213 TVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYG 272
T++A DSSVGGK GIN + GKNLIGAFY+P V+ D D L TLP +++ SG AEV K+
Sbjct: 125 TILAH-DSSVGGKVGINSKQGKNLIGAFYRPTAVIYDLDFLKTLPFKQILSGYAEVYKHA 183
Query: 273 LIRDAEFFEWQEQNMH-KLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHT 331
L+ + EQ+ + + + I + E K ++V DEKE G+R LNLGHT
Sbjct: 184 LLNGESATQDIEQHFKDREILQSLNGMDKYIAKGIETKLDIVVADEKEQGVRKFLNLGHT 243
Query: 332 FGHAIE 337
FGHA+E
Sbjct: 244 FGHAVE 249
>pdb|1DQS|A Chain A, Crystal Structure Of Dehydroquinate Synthase (Dhqs)
Complexed With Carbaphosphonate, Nad+ And Zn2+
pdb|1DQS|B Chain B, Crystal Structure Of Dehydroquinate Synthase (Dhqs)
Complexed With Carbaphosphonate, Nad+ And Zn2+
pdb|1NR5|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+, Nad And Carbaphosphonate
pdb|1NR5|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+, Nad And Carbaphosphonate
pdb|1NRX|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NRX|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NUA|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+
pdb|1NUA|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+
pdb|1NVA|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Adp
pdb|1NVA|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Adp
pdb|1NVB|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVB|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVD|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVD|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVE|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|C Chain C, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|D Chain D, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVF|A Chain A, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1NVF|B Chain B, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1NVF|C Chain C, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1SG6|A Chain A, Crystal Structure Of Aspergillus Nidulans 3-Dehydroquinate
Synthase (Andhqs) In Complex With Zn2+ And Nad+, At 1.7d
pdb|1SG6|B Chain B, Crystal Structure Of Aspergillus Nidulans 3-Dehydroquinate
Synthase (Andhqs) In Complex With Zn2+ And Nad+, At 1.7d
Length = 393
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 157/319 (49%), Gaps = 31/319 (9%)
Query: 119 LVVTNNTVAPLYLDKVTDALTRGNPNVSVENVIL----PDGENYKNMDTLMKVFDKAIES 174
++VT+ + +Y +A + ++ +L P GE K+ T + D +
Sbjct: 40 VLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQ 99
Query: 175 R--LDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRL 232
R +ALGGGVIGD+ G+ A++Y+RGV ++Q+PTT++A VDSS+GGKT I+ L
Sbjct: 100 NPPCGRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPL 159
Query: 233 GKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMA 292
GKNLIGA +QP + +D + L TLP RE +G+AEVIK I E F E+N ++
Sbjct: 160 GKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILK 219
Query: 293 RDPRAFAYAIKR--------------SCENKAEVVSLDEKESGLRATLNLGHTFGHAIET 338
R R S +KA VVS DE+E GLR LN GH+ GHAIE
Sbjct: 220 AVRREVTPGEHRFEGTEEILKARILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEA 279
Query: 339 GFGYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT------ 392
Q LHGE + LG + V R+ L LPT+ D
Sbjct: 280 IL-TPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLT 338
Query: 393 ----MTVEMFKSIMAVDKK 407
+V+ MA+DKK
Sbjct: 339 AGKHCSVDQLMFNMALDKK 357
>pdb|1UJN|A Chain A, Crystal Structure Of Dehydroquinate Synthase From Thermus
Thermophilus Hb8
pdb|1UJN|B Chain B, Crystal Structure Of Dehydroquinate Synthase From Thermus
Thermophilus Hb8
Length = 348
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 127/247 (51%), Gaps = 21/247 (8%)
Query: 94 YPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVI- 151
YPI +G G+L P L G L+ + +V AL V +++
Sbjct: 12 YPILVGEGVLKEVPPL-----AGPAALLFDRRVEG--FAQEVAKAL-------GVRHLLG 57
Query: 152 LPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIP 211
LP GE K+++ KV E L R T + +GGG + D+ G+ AA+YLRGV+++ P
Sbjct: 58 LPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATYLRGVAYLAFP 117
Query: 212 TTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKY 271
TT +A VD+SVGGKTGIN GKNL+GAF+ PQ V + L TLP GL E K+
Sbjct: 118 TTTLAIVDASVGGKTGINLPEGKNLVGAFHFPQGVYAELRALKTLPLPTFKEGLVEAFKH 177
Query: 272 GLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHT 331
GLI E + L + PR A+ + R+ K V D E G R LNLGHT
Sbjct: 178 GLIAGDEAL----LKVEDLTPQSPRLEAF-LARAVAVKVRVTEEDPLEKGKRRLLNLGHT 232
Query: 332 FGHAIET 338
GHA+E
Sbjct: 233 LGHALEA 239
>pdb|2D2X|A Chain A, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
pdb|2D2X|B Chain B, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
pdb|2GRU|A Chain A, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
Complexed With Carbaglucose-6-Phosphate, Nad+ And Co2+
pdb|2GRU|B Chain B, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
Complexed With Carbaglucose-6-Phosphate, Nad+ And Co2+
Length = 368
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 5/197 (2%)
Query: 155 GENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214
GE YK + T+ + ++AI +RR VA+GGG+ G++ G AA RG++ I +PTT
Sbjct: 71 GEEYKTLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMMFRGIALIHVPTTF 130
Query: 215 MAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLI 274
+A DS + K +N GKNL+G +Y P+ V DT L+ P R++ +G+ E++K LI
Sbjct: 131 LAASDSVLSIKQAVNLTSGKNLVGFYYPPRFVFADTRILSESPPRQVKAGMCELVKNMLI 190
Query: 275 RDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLD--EKESGLRATLNLGHTF 332
+ + E+ E +++ P+ I K V+S D EK+ GL GHT
Sbjct: 191 LENDNKEFTEDDLNSANVYSPKQLETFINFCISAKMSVLSEDIYEKKKGL--IFEYGHTI 248
Query: 333 GHAIETGFGYGQWLHGE 349
GHAIE G HGE
Sbjct: 249 GHAIELA-EQGGITHGE 264
>pdb|3CE9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|C Chain C, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|D Chain D, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
Length = 354
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 32/172 (18%)
Query: 144 NVSVENVILPDGENYKNMDTLMKVFDK------AIESRLDRRCTFVALGGGVIGDMCGYA 197
N+ +E V E KN+D FD+ I + +D + +GGG D Y
Sbjct: 61 NIEIEAV-----ETVKNID-----FDEIGTNAFKIPAEVD---ALIGIGGGKAIDAVKYX 107
Query: 198 AASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLP 257
A +LR + FI +PT+ SS IN GK P ++VD D + P
Sbjct: 108 A--FLRKLPFISVPTSTSNDGFSSPVASLLIN---GKRTSVPAKTPDGIVVDIDVIKGSP 162
Query: 258 DRELASGLAEVIKYGLIRDAEFFEWQ-EQNMHKLMARDPRAFAYAIKRSCEN 308
++ + SG+ +++ ++W+ E+ HK + D FA I + N
Sbjct: 163 EKFIYSGIGDLVS----NITALYDWKFEEENHKSIIDD---FAVXISKKSVN 207
>pdb|1JPU|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Glycerol
Dehydrogenase
pdb|1JQA|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Glycerol
pdb|1JQ5|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Nad+
Length = 370
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 14/157 (8%)
Query: 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES 174
G K +V+ + V + + + L +GN ++ E V+ + ++ + + KA
Sbjct: 31 GNKTVVIADEIVWKIAGHTIVNELKKGN--IAAEEVVFSGEASRNEVERIANIARKA--- 85
Query: 175 RLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGK 234
+ +GGG D A A L I +PT A D+ + I G
Sbjct: 86 ---EAAIVIGVGGGKTLDTAK-AVADELDAYIVI-VPTA--ASTDAPTSALSVIYSDDGV 138
Query: 235 NLIGAFYQ--PQCVLVDTDTLNTLPDRELASGLAEVI 269
FY+ P VLVDT + P R LASG+A+ +
Sbjct: 139 FESYRFYKKNPDLVLVDTKIIANAPPRLLASGIADAL 175
>pdb|1TA9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase From
Schizosaccharomyces Pombe
pdb|1TA9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase From
Schizosaccharomyces Pombe
Length = 450
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 31/178 (17%)
Query: 110 QKHVQG----------------KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILP 153
QK+VQG K +V+ + V + +K+ D+L++ ++V ++
Sbjct: 70 QKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWNICANKIVDSLSQNG--MTVTKLVFG 127
Query: 154 DGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 213
+ +D L K D + +GGG D Y A S + I PTT
Sbjct: 128 GEASLVELDKLRKQCP-------DDTQVIIGVGGGKTMDSAKYIAHSM--NLPSIICPTT 178
Query: 214 VMAQVDSSVGGKTGINHRLGKNLIGAFY--QPQCVLVDTDTLNTLPDRELASGLAEVI 269
A D++ + I G+ +FY P + +DTD + P R L SG+ + +
Sbjct: 179 --ASSDAATSSLSVIYTPDGQFQKYSFYPLNPNLIFIDTDVIVRAPVRFLISGIGDAL 234
>pdb|3RNR|A Chain A, Crystal Structure Of Stage Ii Sporulation E Family Protein
From Thermanaerovibrio Acidaminovorans
pdb|3RNR|B Chain B, Crystal Structure Of Stage Ii Sporulation E Family Protein
From Thermanaerovibrio Acidaminovorans
Length = 211
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 168
G+ VLVV++ L+ D++ AL+RG+ + + G Y++ TL V
Sbjct: 157 GEGVLVVSDGVYRSLHEDRIAXALSRGSDARGILQEVEAQGRPYQDNATLALVI 210
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 247 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC 306
L + D L DR+ + LA I ++ E P + A+KR C
Sbjct: 186 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIEL------------PDGYMAALKRKC 233
Query: 307 ENKAEVVSLDEKESGLRAT 325
E + ++ LDE ++G+ T
Sbjct: 234 EARGMLLILDEAQTGVGRT 252
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 247 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC 306
L + D L DR+ + LA I ++ E P + A+KR C
Sbjct: 185 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIEL------------PDGYMAALKRKC 232
Query: 307 ENKAEVVSLDEKESGLRAT 325
E + ++ LDE ++G+ T
Sbjct: 233 EARGMLLILDEAQTGVGRT 251
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 247 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC 306
L + D L DR+ + LA I ++ E P + A+KR C
Sbjct: 186 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIEL------------PDGYMAALKRKC 233
Query: 307 ENKAEVVSLDEKESGLRAT 325
E + ++ LDE ++G+ T
Sbjct: 234 EARGMLLILDEAQTGVGRT 252
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 247 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC 306
L + D L DR+ + LA I ++ E P + A+KR C
Sbjct: 184 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIEL------------PDGYMAALKRKC 231
Query: 307 ENKAEVVSLDEKESGLRAT 325
E + ++ LDE ++G+ T
Sbjct: 232 EARGMLLILDEAQTGVGRT 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,397,588
Number of Sequences: 62578
Number of extensions: 488675
Number of successful extensions: 1183
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1162
Number of HSP's gapped (non-prelim): 22
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)