Query 013271
Match_columns 446
No_of_seqs 209 out of 1709
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:09:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0337 AroB 3-dehydroquinate 100.0 8E-80 1.7E-84 613.3 37.3 359 82-445 1-359 (360)
2 PLN02834 3-dehydroquinate synt 100.0 1.3E-72 2.9E-77 585.4 44.9 368 79-446 64-431 (433)
3 cd08198 DHQS-like2 Dehydroquin 100.0 5.3E-68 1.1E-72 539.1 37.7 348 93-442 1-368 (369)
4 cd08197 DOIS 2-deoxy-scyllo-in 100.0 8.5E-68 1.8E-72 538.0 37.2 344 93-441 1-355 (355)
5 cd08195 DHQS Dehydroquinate sy 100.0 5.9E-67 1.3E-71 531.4 35.5 344 93-440 1-345 (345)
6 PRK00002 aroB 3-dehydroquinate 100.0 3E-66 6.6E-71 528.6 38.4 354 86-444 2-356 (358)
7 cd08169 DHQ-like Dehydroquinat 100.0 5.7E-66 1.2E-70 523.3 37.7 340 93-439 1-343 (344)
8 cd08196 DHQS-like1 Dehydroquin 100.0 3.7E-65 7.9E-70 516.5 36.5 338 93-444 1-342 (346)
9 PRK14021 bifunctional shikimat 100.0 7.5E-65 1.6E-69 542.5 37.9 355 83-445 177-542 (542)
10 TIGR01357 aroB 3-dehydroquinat 100.0 3E-64 6.4E-69 511.4 37.6 341 94-440 1-343 (344)
11 cd08199 EEVS 2-epi-5-epi-valio 100.0 8.9E-63 1.9E-67 501.3 37.8 341 93-438 1-353 (354)
12 PRK06203 aroB 3-dehydroquinate 100.0 2.1E-61 4.5E-66 496.1 38.4 351 92-444 12-381 (389)
13 PRK13951 bifunctional shikimat 100.0 1.1E-60 2.4E-65 503.3 32.2 318 90-435 168-486 (488)
14 PF01761 DHQ_synthase: 3-dehyd 100.0 1.4E-60 3E-65 464.1 24.3 258 151-409 2-260 (260)
15 PRK00843 egsA NAD(P)-dependent 100.0 5.3E-50 1.1E-54 407.8 28.0 316 93-441 11-345 (350)
16 cd08549 G1PDH_related Glycerol 100.0 1.5E-47 3.2E-52 387.2 27.8 299 93-416 1-323 (332)
17 COG1454 EutG Alcohol dehydroge 100.0 4.9E-44 1.1E-48 362.4 27.3 322 92-442 6-375 (377)
18 cd07766 DHQ_Fe-ADH Dehydroquin 100.0 2.1E-43 4.5E-48 356.8 28.9 293 93-404 1-309 (332)
19 cd08173 Gro1PDH Sn-glycerol-1- 100.0 5.5E-43 1.2E-47 355.0 28.8 316 93-441 2-336 (339)
20 cd08174 G1PDH-like Glycerol-1- 100.0 8.7E-43 1.9E-47 352.4 25.4 309 93-440 1-330 (331)
21 cd08175 G1PDH Glycerol-1-phosp 100.0 1.8E-42 3.9E-47 352.4 25.0 304 95-414 3-337 (348)
22 PRK09860 putative alcohol dehy 100.0 5.5E-41 1.2E-45 345.4 29.1 322 92-442 8-381 (383)
23 cd08178 AAD_C C-terminal alcoh 100.0 1.4E-40 3.1E-45 344.1 27.5 288 93-398 1-364 (398)
24 cd08182 HEPD Hydroxyethylphosp 100.0 2.1E-40 4.5E-45 339.5 28.4 317 93-440 1-366 (367)
25 PRK15454 ethanol dehydrogenase 100.0 2.5E-40 5.4E-45 341.6 27.5 323 92-444 26-395 (395)
26 TIGR02638 lactal_redase lactal 100.0 6E-40 1.3E-44 337.4 27.8 297 92-404 6-356 (379)
27 cd08189 Fe-ADH5 Iron-containin 100.0 1.2E-39 2.7E-44 334.6 29.4 296 92-404 3-350 (374)
28 cd08193 HVD 5-hydroxyvalerate 100.0 7.2E-40 1.6E-44 336.5 27.6 320 92-440 3-375 (376)
29 cd08177 MAR Maleylacetate redu 100.0 7.7E-40 1.7E-44 331.7 26.7 312 93-440 1-336 (337)
30 PRK10624 L-1,2-propanediol oxi 100.0 1.9E-39 4.1E-44 334.1 29.5 321 92-442 7-380 (382)
31 cd08185 Fe-ADH1 Iron-containin 100.0 3.1E-39 6.7E-44 332.3 29.3 322 92-440 3-379 (380)
32 cd08186 Fe-ADH8 Iron-containin 100.0 3.2E-39 7E-44 332.4 28.9 325 94-442 2-381 (383)
33 cd08192 Fe-ADH7 Iron-containin 100.0 3.5E-39 7.6E-44 330.8 28.0 319 93-440 2-369 (370)
34 cd08176 LPO Lactadehyde:propan 100.0 4E-39 8.6E-44 331.2 27.7 320 92-440 5-376 (377)
35 TIGR03405 Phn_Fe-ADH phosphona 100.0 2.9E-39 6.3E-44 329.6 26.4 294 92-405 3-343 (355)
36 cd08194 Fe-ADH6 Iron-containin 100.0 1.1E-38 2.4E-43 327.7 28.5 287 93-397 1-340 (375)
37 cd08188 Fe-ADH4 Iron-containin 100.0 1.7E-38 3.7E-43 326.4 28.9 319 93-440 6-376 (377)
38 cd08190 HOT Hydroxyacid-oxoaci 100.0 1.6E-38 3.5E-43 330.2 28.7 324 94-442 2-412 (414)
39 cd08187 BDH Butanol dehydrogen 100.0 2.1E-38 4.5E-43 326.4 28.7 319 92-440 6-381 (382)
40 cd08191 HHD 6-hydroxyhexanoate 100.0 1.5E-38 3.2E-43 327.8 27.1 295 93-404 1-362 (386)
41 cd08180 PDD 1,3-propanediol de 100.0 1.2E-38 2.7E-43 322.3 25.7 277 92-398 3-298 (332)
42 cd08183 Fe-ADH2 Iron-containin 100.0 2.4E-38 5.2E-43 325.1 27.0 314 93-440 1-373 (374)
43 cd08179 NADPH_BDH NADPH-depend 100.0 2.4E-38 5.3E-43 325.1 26.9 320 92-443 4-372 (375)
44 cd08551 Fe-ADH iron-containing 100.0 2.7E-38 5.9E-43 324.2 26.9 297 93-405 1-348 (370)
45 cd08172 GlyDH-like1 Glycerol d 100.0 4.5E-38 9.7E-43 320.0 25.5 314 93-442 2-346 (347)
46 cd08550 GlyDH-like Glycerol_de 100.0 5.7E-38 1.2E-42 319.5 26.0 314 93-442 1-348 (349)
47 cd08181 PPD-like 1,3-propanedi 100.0 1.1E-37 2.4E-42 318.2 28.1 316 92-440 3-356 (357)
48 cd08170 GlyDH Glycerol dehydro 100.0 4.5E-38 9.7E-43 320.4 24.9 317 93-442 1-347 (351)
49 PRK09423 gldA glycerol dehydro 100.0 9.5E-38 2.1E-42 319.8 26.0 317 92-441 7-353 (366)
50 PRK15138 aldehyde reductase; P 100.0 3.8E-37 8.3E-42 317.2 29.4 326 82-442 1-385 (387)
51 cd08184 Fe-ADH3 Iron-containin 100.0 1.2E-36 2.5E-41 308.9 27.4 285 95-407 3-321 (347)
52 PF00465 Fe-ADH: Iron-containi 100.0 4.6E-37 1E-41 314.6 23.1 296 93-406 1-349 (366)
53 COG0371 GldA Glycerol dehydrog 100.0 7.4E-36 1.6E-40 299.8 26.3 320 92-441 7-352 (360)
54 COG1979 Uncharacterized oxidor 100.0 7.3E-36 1.6E-40 289.9 25.2 320 82-442 1-382 (384)
55 cd08171 GlyDH-like2 Glycerol d 100.0 2.7E-35 5.8E-40 299.4 25.9 313 96-442 4-344 (345)
56 PRK13805 bifunctional acetalde 100.0 7.9E-35 1.7E-39 327.0 31.1 289 92-398 459-825 (862)
57 PRK10586 putative oxidoreducta 100.0 7.1E-34 1.5E-38 290.2 25.8 310 93-442 12-356 (362)
58 KOG3857 Alcohol dehydrogenase, 100.0 4.5E-33 9.8E-38 271.2 18.7 324 94-442 49-460 (465)
59 PF13685 Fe-ADH_2: Iron-contai 100.0 1.3E-31 2.7E-36 259.5 17.8 235 97-352 1-250 (250)
60 KOG0692 Pentafunctional AROM p 97.3 0.00012 2.5E-09 76.2 2.8 79 346-425 1-89 (595)
61 TIGR01162 purE phosphoribosyla 96.5 0.025 5.5E-07 51.2 10.2 85 118-213 1-85 (156)
62 PF00731 AIRC: AIR carboxylase 96.4 0.022 4.8E-07 51.3 9.4 86 117-213 2-87 (150)
63 COG0041 PurE Phosphoribosylcar 95.1 0.18 4E-06 45.3 9.5 86 117-213 4-89 (162)
64 COG1570 XseA Exonuclease VII, 91.8 1.1 2.3E-05 47.2 9.7 88 115-208 135-229 (440)
65 PLN02948 phosphoribosylaminoim 91.7 1.3 2.7E-05 48.7 10.8 87 116-213 411-497 (577)
66 PRK13337 putative lipid kinase 91.5 1.5 3.2E-05 43.9 10.4 90 116-219 2-96 (304)
67 PLN02958 diacylglycerol kinase 91.5 1.8 4E-05 46.4 11.5 93 114-219 110-212 (481)
68 PRK13054 lipid kinase; Reviewe 91.2 1.7 3.6E-05 43.4 10.3 92 115-219 3-97 (300)
69 PRK13055 putative lipid kinase 90.8 1.9 4E-05 43.9 10.4 91 116-219 3-98 (334)
70 PRK11914 diacylglycerol kinase 90.4 3.4 7.3E-05 41.3 11.7 89 115-219 8-101 (306)
71 TIGR00237 xseA exodeoxyribonuc 90.3 2.1 4.5E-05 45.3 10.5 89 115-208 129-223 (432)
72 PRK00286 xseA exodeoxyribonucl 90.3 1.8 3.9E-05 45.8 10.0 88 115-208 135-228 (438)
73 TIGR00147 lipid kinase, YegS/R 89.5 2.9 6.2E-05 41.4 10.3 86 116-213 2-92 (293)
74 TIGR03702 lip_kinase_YegS lipi 89.1 2.5 5.5E-05 42.0 9.6 89 118-219 2-93 (293)
75 PF02601 Exonuc_VII_L: Exonucl 88.1 3.5 7.7E-05 41.5 9.9 89 114-208 13-111 (319)
76 PRK13059 putative lipid kinase 87.8 5.4 0.00012 39.8 10.9 89 116-219 2-95 (295)
77 COG3340 PepE Peptidase E [Amin 87.2 10 0.00022 36.3 11.6 81 115-210 32-124 (224)
78 COG1597 LCB5 Sphingosine kinas 85.8 6.4 0.00014 39.5 10.3 89 115-219 2-96 (301)
79 PRK03202 6-phosphofructokinase 82.1 5.3 0.00012 40.6 7.9 50 159-214 77-126 (320)
80 PF06506 PrpR_N: Propionate ca 81.9 9.6 0.00021 34.9 9.0 77 114-213 76-152 (176)
81 PF01513 NAD_kinase: ATP-NAD k 80.9 0.62 1.3E-05 46.3 0.7 87 117-213 1-109 (285)
82 cd00763 Bacterial_PFK Phosphof 79.9 8.7 0.00019 39.0 8.5 50 159-214 76-125 (317)
83 TIGR02482 PFKA_ATP 6-phosphofr 79.7 8.6 0.00019 38.7 8.4 50 160-214 76-125 (301)
84 PF00781 DAGK_cat: Diacylglyce 78.4 23 0.0005 30.4 9.8 87 117-213 1-91 (130)
85 PRK13057 putative lipid kinase 77.5 19 0.00041 35.6 10.1 69 130-213 14-83 (287)
86 PRK01231 ppnK inorganic polyph 77.3 7.3 0.00016 39.1 7.1 86 115-213 4-95 (295)
87 PRK02645 ppnK inorganic polyph 75.4 13 0.00028 37.5 8.2 83 115-212 3-89 (305)
88 PRK00861 putative lipid kinase 75.1 19 0.00042 35.7 9.5 87 116-219 3-94 (300)
89 cd06350 PBP1_GPCR_family_C_lik 74.7 46 0.001 33.0 12.2 89 107-205 153-242 (348)
90 PRK02155 ppnK NAD(+)/NADH kina 74.3 9.7 0.00021 38.1 7.0 87 115-213 5-96 (291)
91 cd00363 PFK Phosphofructokinas 74.1 8.9 0.00019 39.2 6.8 52 160-214 77-131 (338)
92 TIGR00853 pts-lac PTS system, 73.7 47 0.001 27.4 9.9 81 115-213 3-84 (95)
93 PF00365 PFK: Phosphofructokin 73.5 6.1 0.00013 39.4 5.3 50 160-214 77-126 (282)
94 TIGR02483 PFK_mixed phosphofru 73.1 9 0.00019 39.0 6.5 48 161-214 80-127 (324)
95 cd08178 AAD_C C-terminal alcoh 72.9 31 0.00067 36.0 10.7 78 328-409 258-348 (398)
96 PRK14072 6-phosphofructokinase 72.9 9.9 0.00021 40.1 7.0 52 160-214 88-142 (416)
97 PRK09590 celB cellobiose phosp 72.8 43 0.00094 28.2 9.6 82 116-213 2-84 (104)
98 PLN02251 pyrophosphate-depende 72.2 10 0.00022 41.5 7.0 54 158-214 173-229 (568)
99 TIGR02477 PFKA_PPi diphosphate 71.3 10 0.00022 41.3 6.8 53 159-214 145-200 (539)
100 cd00765 Pyrophosphate_PFK Phos 71.3 10 0.00022 41.3 6.8 53 159-214 150-205 (550)
101 PRK12361 hypothetical protein; 71.0 26 0.00057 38.1 10.0 88 115-219 242-334 (547)
102 PRK14071 6-phosphofructokinase 70.0 11 0.00024 38.9 6.5 49 161-214 93-141 (360)
103 PLN03028 pyrophosphate--fructo 69.6 11 0.00024 41.7 6.6 55 158-215 156-213 (610)
104 PRK07085 diphosphate--fructose 69.1 11 0.00024 41.2 6.4 54 159-215 148-204 (555)
105 PRK06555 pyrophosphate--fructo 68.4 13 0.00029 38.9 6.6 51 161-214 98-151 (403)
106 COG0205 PfkA 6-phosphofructoki 67.9 26 0.00057 36.0 8.6 72 133-214 57-128 (347)
107 COG3199 Predicted inorganic po 67.9 23 0.00049 36.3 7.9 48 159-213 84-132 (355)
108 PF02006 DUF137: Protein of un 67.4 18 0.0004 33.2 6.5 65 115-189 4-68 (178)
109 PRK04539 ppnK inorganic polyph 67.3 30 0.00065 34.8 8.7 86 115-213 5-101 (296)
110 cd06342 PBP1_ABC_LIVBP_like Ty 66.9 49 0.0011 32.5 10.3 89 107-206 127-216 (334)
111 TIGR02329 propionate_PrpR prop 66.9 42 0.00091 36.5 10.4 67 114-197 96-162 (526)
112 PRK14077 pnk inorganic polypho 65.6 25 0.00055 35.1 7.8 86 115-213 10-97 (287)
113 PTZ00287 6-phosphofructokinase 65.6 25 0.00054 42.3 8.8 54 158-214 911-967 (1419)
114 PRK03372 ppnK inorganic polyph 64.8 25 0.00055 35.5 7.7 87 115-213 5-105 (306)
115 PRK03708 ppnK inorganic polyph 64.1 24 0.00053 35.0 7.4 84 117-213 2-89 (277)
116 PTZ00468 phosphofructokinase f 63.7 31 0.00067 41.3 9.0 50 163-215 788-845 (1328)
117 COG2359 SpoVS Stage V sporulat 63.0 31 0.00067 27.5 6.1 49 162-213 14-66 (87)
118 COG0683 LivK ABC-type branched 62.3 46 0.001 34.0 9.3 78 106-192 139-217 (366)
119 cd06334 PBP1_ABC_ligand_bindin 61.9 59 0.0013 32.9 10.0 79 115-205 140-220 (351)
120 PRK03378 ppnK inorganic polyph 61.8 28 0.00061 34.9 7.4 86 115-213 5-96 (292)
121 PF13458 Peripla_BP_6: Peripla 61.6 1.1E+02 0.0024 30.0 11.8 80 114-204 134-214 (343)
122 cd06346 PBP1_ABC_ligand_bindin 61.5 60 0.0013 31.9 9.7 87 107-205 130-217 (312)
123 cd06347 PBP1_ABC_ligand_bindin 60.9 98 0.0021 30.3 11.2 89 107-206 127-217 (334)
124 cd00764 Eukaryotic_PFK Phospho 60.6 23 0.00051 40.2 7.2 65 161-228 464-535 (762)
125 PRK15424 propionate catabolism 60.4 47 0.001 36.3 9.2 67 114-197 106-172 (538)
126 cd06355 PBP1_FmdD_like Peripla 60.3 91 0.002 31.3 11.0 81 107-197 125-208 (348)
127 cd05564 PTS_IIB_chitobiose_lic 60.3 95 0.0021 25.5 9.4 78 117-213 1-80 (96)
128 cd06268 PBP1_ABC_transporter_L 59.9 95 0.0021 29.2 10.6 94 107-213 127-225 (298)
129 cd06374 PBP1_mGluR_groupI Liga 59.8 96 0.0021 32.8 11.5 99 107-213 179-280 (472)
130 cd05565 PTS_IIB_lactose PTS_II 59.5 1E+02 0.0023 25.7 9.7 79 117-213 2-81 (99)
131 cd06362 PBP1_mGluR Ligand bind 58.8 1.1E+02 0.0024 31.9 11.7 95 107-212 165-264 (452)
132 PRK06455 riboflavin synthase; 58.5 89 0.0019 28.4 9.2 75 117-199 3-77 (155)
133 PRK01911 ppnK inorganic polyph 58.3 34 0.00074 34.3 7.2 84 117-213 2-97 (292)
134 TIGR03590 PseG pseudaminic aci 57.5 86 0.0019 30.8 10.0 26 181-213 244-269 (279)
135 PRK00561 ppnK inorganic polyph 56.6 36 0.00077 33.6 6.9 31 180-213 35-66 (259)
136 cd06366 PBP1_GABAb_receptor Li 56.4 1.2E+02 0.0026 30.1 11.1 95 107-212 128-227 (350)
137 PLN02884 6-phosphofructokinase 56.0 26 0.00057 36.9 6.2 49 163-214 131-182 (411)
138 KOG4132 Uroporphyrinogen III s 55.2 55 0.0012 31.7 7.5 87 118-214 136-225 (260)
139 TIGR00114 lumazine-synth 6,7-d 54.3 85 0.0019 27.9 8.3 89 117-213 2-105 (138)
140 COG0541 Ffh Signal recognition 54.0 49 0.0011 35.1 7.7 77 97-184 108-188 (451)
141 TIGR02478 6PF1K_euk 6-phosphof 52.8 57 0.0012 37.1 8.6 51 161-214 464-518 (745)
142 cd06371 PBP1_sensory_GC_DEF_li 52.8 1.5E+02 0.0034 30.2 11.4 97 107-213 125-229 (382)
143 PF02502 LacAB_rpiB: Ribose/Ga 52.5 1E+02 0.0022 27.5 8.5 89 117-214 1-89 (140)
144 PRK02649 ppnK inorganic polyph 52.5 63 0.0014 32.6 8.1 85 116-213 2-101 (305)
145 PRK13761 hypothetical protein; 51.8 39 0.00085 32.6 6.0 84 94-187 41-129 (248)
146 COG1731 Archaeal riboflavin sy 51.7 63 0.0014 28.6 6.7 71 121-199 6-79 (154)
147 TIGR01884 cas_HTH CRISPR locus 51.1 1.9E+02 0.0041 27.0 10.7 84 115-205 26-115 (203)
148 cd06349 PBP1_ABC_ligand_bindin 51.1 1.3E+02 0.0028 29.8 10.2 73 114-198 134-208 (340)
149 PRK15404 leucine ABC transport 51.0 1.3E+02 0.0029 30.5 10.5 80 114-205 160-241 (369)
150 PTZ00468 phosphofructokinase f 50.2 36 0.00077 40.8 6.6 54 159-215 180-236 (1328)
151 PTZ00286 6-phospho-1-fructokin 49.9 38 0.00083 36.2 6.3 50 162-214 163-215 (459)
152 PLN02935 Bifunctional NADH kin 49.2 38 0.00083 36.5 6.2 89 114-213 193-295 (508)
153 COG2515 Acd 1-aminocyclopropan 49.1 1E+02 0.0023 31.1 8.8 100 106-213 107-216 (323)
154 PLN02204 diacylglycerol kinase 48.8 60 0.0013 35.8 7.7 76 114-197 158-238 (601)
155 cd06329 PBP1_SBP_like_3 Peripl 48.3 1.4E+02 0.0031 29.7 10.1 87 108-205 136-226 (342)
156 PTZ00287 6-phosphofructokinase 48.2 41 0.00088 40.6 6.7 54 159-215 255-311 (1419)
157 cd06352 PBP1_NPR_GC_like Ligan 48.1 2.1E+02 0.0046 28.9 11.4 87 107-205 130-219 (389)
158 cd06379 PBP1_iGluR_NMDA_NR1 N- 47.7 2.3E+02 0.005 28.7 11.7 96 107-213 147-249 (377)
159 COG1440 CelA Phosphotransferas 47.2 1.3E+02 0.0028 25.4 7.8 80 116-213 2-82 (102)
160 PF09002 DUF1887: Domain of un 47.2 1.4E+02 0.0031 30.9 10.0 90 114-213 26-119 (381)
161 PRK06830 diphosphate--fructose 46.7 51 0.0011 35.1 6.7 50 162-214 159-211 (443)
162 PF00885 DMRL_synthase: 6,7-di 46.6 83 0.0018 28.1 7.1 70 115-192 3-80 (144)
163 cd06335 PBP1_ABC_ligand_bindin 46.6 1.5E+02 0.0033 29.6 10.0 81 114-205 137-218 (347)
164 TIGR02478 6PF1K_euk 6-phosphof 46.2 1.1E+02 0.0023 35.0 9.4 62 159-223 78-162 (745)
165 cd06358 PBP1_NHase Type I peri 46.0 2E+02 0.0043 28.4 10.7 74 114-197 131-207 (333)
166 PRK04885 ppnK inorganic polyph 45.9 62 0.0014 31.9 6.8 32 181-213 38-70 (265)
167 cd06360 PBP1_alkylbenzenes_lik 45.9 1.7E+02 0.0038 28.6 10.2 80 106-198 126-207 (336)
168 cd06328 PBP1_SBP_like_2 Peripl 45.7 1.5E+02 0.0032 29.5 9.7 76 115-201 136-213 (333)
169 COG0777 AccD Acetyl-CoA carbox 45.7 66 0.0014 32.0 6.7 94 162-260 144-249 (294)
170 PLN02564 6-phosphofructokinase 44.7 51 0.0011 35.5 6.3 49 163-214 164-215 (484)
171 PF04392 ABC_sub_bind: ABC tra 44.7 50 0.0011 32.6 6.0 74 129-212 15-89 (294)
172 PRK04155 chaperone protein Hch 44.7 1.7E+02 0.0038 29.2 9.8 36 179-214 148-190 (287)
173 COG0521 MoaB Molybdopterin bio 44.5 95 0.0021 28.7 7.2 63 117-188 11-77 (169)
174 cd06363 PBP1_Taste_receptor Li 44.3 2.7E+02 0.0059 28.6 11.7 75 107-189 169-245 (410)
175 cd06320 PBP1_allose_binding Pe 43.4 2.8E+02 0.006 26.2 10.9 75 128-213 15-91 (275)
176 cd06345 PBP1_ABC_ligand_bindin 43.2 1.5E+02 0.0033 29.4 9.4 80 114-205 143-224 (344)
177 cd06338 PBP1_ABC_ligand_bindin 43.1 1.9E+02 0.0041 28.6 10.0 80 107-198 132-214 (345)
178 PF02084 Bindin: Bindin; Inte 42.9 33 0.00072 32.9 4.0 49 368-426 101-151 (238)
179 cd06356 PBP1_Amide_Urea_BP_lik 42.8 2.4E+02 0.0053 27.9 10.8 71 107-188 125-197 (334)
180 cd06327 PBP1_SBP_like_1 Peripl 42.8 1.5E+02 0.0033 29.2 9.3 85 108-205 129-215 (334)
181 cd06300 PBP1_ABC_sugar_binding 42.7 2.9E+02 0.0064 25.9 11.1 75 130-213 17-94 (272)
182 cd06375 PBP1_mGluR_groupII Lig 42.3 2.7E+02 0.0058 29.4 11.4 93 107-210 167-262 (458)
183 PLN02727 NAD kinase 42.3 45 0.00098 38.6 5.7 89 114-213 677-776 (986)
184 cd04509 PBP1_ABC_transporter_G 42.1 2.4E+02 0.0053 26.3 10.2 71 107-188 129-201 (299)
185 cd06341 PBP1_ABC_ligand_bindin 42.0 1.6E+02 0.0034 29.1 9.2 82 106-198 124-209 (341)
186 TIGR03407 urea_ABC_UrtA urea A 41.6 2.3E+02 0.005 28.5 10.5 65 114-188 133-199 (359)
187 cd06343 PBP1_ABC_ligand_bindin 41.6 2.4E+02 0.0053 28.1 10.6 81 114-205 143-224 (362)
188 PF04232 SpoVS: Stage V sporul 41.0 53 0.0011 26.9 4.4 49 162-213 14-66 (86)
189 cd00764 Eukaryotic_PFK Phospho 40.4 1.6E+02 0.0034 33.7 9.6 62 159-223 81-165 (762)
190 cd06330 PBP1_Arsenic_SBP_like 40.0 1.4E+02 0.0031 29.5 8.6 82 107-197 129-212 (346)
191 COG1691 NCAIR mutase (PurE)-re 39.9 3.7E+02 0.0079 26.2 10.7 89 115-215 117-206 (254)
192 COG0556 UvrB Helicase subunit 39.7 1.2E+02 0.0026 33.2 7.9 57 114-185 445-503 (663)
193 cd06389 PBP1_iGluR_AMPA_GluR2 39.6 1.7E+02 0.0036 29.9 9.1 115 91-214 94-213 (370)
194 COG3414 SgaB Phosphotransferas 39.5 81 0.0017 26.1 5.4 41 116-156 2-44 (93)
195 PRK13609 diacylglycerol glucos 39.4 2.1E+02 0.0047 28.8 9.9 44 164-213 93-136 (380)
196 cd06339 PBP1_YraM_LppC_lipopro 38.5 2.8E+02 0.0061 27.6 10.5 72 108-189 118-211 (336)
197 cd03786 GT1_UDP-GlcNAc_2-Epime 38.2 2.2E+02 0.0047 28.3 9.6 90 115-212 28-120 (363)
198 cd08193 HVD 5-hydroxyvalerate 38.1 4.2E+02 0.0092 27.2 11.9 18 370-387 289-306 (376)
199 PLN02404 6,7-dimethyl-8-ribity 37.8 2.4E+02 0.0053 25.2 8.6 65 115-187 7-75 (141)
200 PRK04346 tryptophan synthase s 37.7 2.9E+02 0.0063 29.0 10.6 114 92-213 131-261 (397)
201 TIGR01506 ribC_arch riboflavin 37.1 1.4E+02 0.003 27.1 6.9 83 121-213 4-98 (151)
202 KOG4513 Phosphoglycerate mutas 36.9 1.6E+02 0.0034 30.8 8.0 68 118-189 128-200 (531)
203 PRK14076 pnk inorganic polypho 36.7 90 0.0019 34.3 6.9 87 115-213 290-381 (569)
204 cd06365 PBP1_Pheromone_recepto 36.5 4E+02 0.0086 28.2 11.7 76 107-188 165-241 (469)
205 PRK11780 isoprenoid biosynthes 36.5 2.9E+02 0.0063 26.3 9.6 36 178-213 85-137 (217)
206 COG1701 Uncharacterized protei 36.4 81 0.0017 30.3 5.5 86 92-187 41-131 (256)
207 COG5012 Predicted cobalamin bi 36.2 43 0.00094 32.2 3.7 38 160-198 168-206 (227)
208 TIGR02638 lactal_redase lactal 36.0 5E+02 0.011 26.7 12.1 54 329-387 258-311 (379)
209 cd03169 GATase1_PfpI_1 Type 1 35.9 1.1E+02 0.0024 27.6 6.5 35 180-214 78-118 (180)
210 cd06361 PBP1_GPC6A_like Ligand 35.8 3.7E+02 0.008 27.8 11.1 100 107-213 165-267 (403)
211 cd06340 PBP1_ABC_ligand_bindin 35.6 2.2E+02 0.0047 28.4 9.1 79 115-205 144-224 (347)
212 PRK08622 galactose-6-phosphate 35.6 2.5E+02 0.0054 26.0 8.5 85 117-210 2-86 (171)
213 cd01537 PBP1_Repressors_Sugar_ 35.5 3.5E+02 0.0076 24.7 10.1 75 127-213 14-88 (264)
214 cd06348 PBP1_ABC_ligand_bindin 34.9 2.7E+02 0.0058 27.5 9.6 79 114-204 135-216 (344)
215 PRK12390 1-aminocyclopropane-1 34.7 4.6E+02 0.0099 26.5 11.3 51 161-212 173-224 (337)
216 cd06368 PBP1_iGluR_non_NMDA_li 34.7 4.1E+02 0.009 25.8 10.9 82 107-201 120-201 (324)
217 KOG0780 Signal recognition par 34.6 1.4E+02 0.0031 31.4 7.3 81 98-189 110-194 (483)
218 TIGR01120 rpiB ribose 5-phosph 34.2 1.4E+02 0.003 26.8 6.4 87 118-213 2-88 (143)
219 cd06353 PBP1_BmpA_Med_like Per 34.1 2.1E+02 0.0046 27.6 8.5 47 160-211 42-88 (258)
220 KOG3198 Signal recognition par 34.1 83 0.0018 28.3 4.9 57 372-438 45-102 (152)
221 COG5441 Uncharacterized conser 34.0 2.5E+02 0.0053 28.6 8.6 35 180-214 93-127 (401)
222 PF08759 DUF1792: Domain of un 34.0 42 0.0009 32.4 3.3 71 107-187 107-177 (225)
223 COG4671 Predicted glycosyl tra 34.0 70 0.0015 33.1 5.0 111 117-273 252-363 (400)
224 cd00758 MoCF_BD MoCF_BD: molyb 33.9 2.2E+02 0.0048 24.5 7.8 56 130-196 20-78 (133)
225 PRK02399 hypothetical protein; 33.8 1.3E+02 0.0028 31.7 7.1 38 174-214 94-131 (406)
226 PRK00061 ribH 6,7-dimethyl-8-r 33.7 3E+02 0.0064 24.9 8.6 64 115-186 12-79 (154)
227 PRK03501 ppnK inorganic polyph 33.7 1.9E+02 0.004 28.6 7.9 67 117-212 4-72 (264)
228 PRK12419 riboflavin synthase s 33.1 3.1E+02 0.0068 25.0 8.6 65 115-187 10-78 (158)
229 COG0703 AroK Shikimate kinase 33.0 31 0.00067 31.9 2.2 15 181-195 74-88 (172)
230 KOG3075 Ribose 5-phosphate iso 33.0 1.1E+02 0.0024 30.0 6.0 36 179-215 42-81 (261)
231 COG1125 OpuBA ABC-type proline 32.9 98 0.0021 30.9 5.7 71 365-445 103-183 (309)
232 cd06326 PBP1_STKc_like Type I 32.8 3.6E+02 0.0079 26.3 10.1 80 108-197 130-211 (336)
233 cd06364 PBP1_CaSR Ligand-bindi 32.6 3.1E+02 0.0068 29.5 10.2 87 107-204 180-268 (510)
234 PF13433 Peripla_BP_5: Peripla 32.4 4.7E+02 0.01 27.2 10.9 90 114-213 132-227 (363)
235 PLN02929 NADH kinase 32.3 1E+02 0.0022 31.2 5.8 65 126-213 31-96 (301)
236 cd06281 PBP1_LacI_like_5 Ligan 32.2 3.7E+02 0.008 25.2 9.7 76 126-213 13-88 (269)
237 TIGR02667 moaB_proteo molybden 31.9 1.6E+02 0.0036 26.6 6.8 53 130-192 23-77 (163)
238 PRK05571 ribose-5-phosphate is 31.9 1.7E+02 0.0036 26.4 6.6 85 117-210 2-87 (148)
239 TIGR03568 NeuC_NnaA UDP-N-acet 31.8 3.4E+02 0.0074 27.7 10.0 91 115-213 29-126 (365)
240 cd03132 GATase1_catalase Type 31.4 95 0.002 26.8 5.0 92 116-213 2-104 (142)
241 TIGR01138 cysM cysteine syntha 31.4 5.2E+02 0.011 25.5 10.8 111 93-213 84-199 (290)
242 cd06298 PBP1_CcpA_like Ligand- 30.6 3.8E+02 0.0081 25.0 9.5 74 127-213 14-87 (268)
243 cd08188 Fe-ADH4 Iron-containin 30.4 6.2E+02 0.013 26.0 12.0 53 330-387 256-308 (377)
244 PF03610 EIIA-man: PTS system 30.3 3.2E+02 0.007 22.8 9.5 73 117-196 1-77 (116)
245 PRK10653 D-ribose transporter 30.3 5E+02 0.011 24.9 11.3 74 129-213 43-116 (295)
246 cd00886 MogA_MoaB MogA_MoaB fa 29.7 1.2E+02 0.0027 26.9 5.5 53 130-192 21-75 (152)
247 PRK10310 PTS system galactitol 29.4 1.1E+02 0.0023 25.1 4.6 30 116-145 3-34 (94)
248 TIGR03669 urea_ABC_arch urea A 29.4 4.3E+02 0.0093 27.0 10.2 79 107-196 126-207 (374)
249 cd01574 PBP1_LacI Ligand-bindi 29.3 3.9E+02 0.0084 24.8 9.3 75 126-213 13-88 (264)
250 PF10281 Ish1: Putative stress 28.8 1.4E+02 0.0031 20.1 4.4 29 374-403 7-35 (38)
251 PRK14075 pnk inorganic polypho 28.7 1.2E+02 0.0027 29.6 5.8 68 118-213 3-71 (256)
252 TIGR01119 lacB galactose-6-pho 28.5 2.1E+02 0.0045 26.5 6.7 87 117-212 2-88 (171)
253 PRK11574 oxidative-stress-resi 28.4 1.3E+02 0.0028 27.6 5.6 95 115-214 2-109 (196)
254 PTZ00215 ribose 5-phosphate is 28.2 2.2E+02 0.0048 25.7 6.8 88 116-212 3-92 (151)
255 PRK03910 D-cysteine desulfhydr 27.9 6.3E+02 0.014 25.3 13.6 50 163-213 169-219 (331)
256 PRK10017 colanic acid biosynth 27.8 2.3E+02 0.0049 30.0 7.9 36 180-215 119-159 (426)
257 PRK04761 ppnK inorganic polyph 27.1 1.1E+02 0.0023 30.0 4.9 31 180-213 27-58 (246)
258 COG1658 Small primase-like pro 27.1 99 0.0022 27.2 4.2 49 92-140 30-81 (127)
259 PRK05282 (alpha)-aspartyl dipe 27.0 3.9E+02 0.0084 25.9 8.7 95 97-210 11-119 (233)
260 COG1770 PtrB Protease II [Amin 26.9 1E+02 0.0022 34.4 5.1 58 158-215 505-569 (682)
261 PF13407 Peripla_BP_4: Peripla 26.7 1.7E+02 0.0037 27.4 6.3 77 127-213 13-89 (257)
262 PF01202 SKI: Shikimate kinase 26.6 49 0.0011 29.5 2.3 62 116-195 17-78 (158)
263 TIGR01382 PfpI intracellular p 26.4 2E+02 0.0043 25.4 6.3 35 180-214 62-102 (166)
264 PRK15418 transcriptional regul 26.2 4.5E+02 0.0097 26.6 9.4 50 162-213 99-149 (318)
265 cd06274 PBP1_FruR Ligand bindi 26.1 4.9E+02 0.011 24.3 9.4 75 126-213 13-87 (264)
266 PRK09417 mogA molybdenum cofac 26.0 2E+02 0.0044 27.0 6.4 54 130-191 24-79 (193)
267 cd06357 PBP1_AmiC Periplasmic 26.0 6.3E+02 0.014 25.3 10.6 81 107-197 125-206 (360)
268 cd01536 PBP1_ABC_sugar_binding 25.9 5.2E+02 0.011 23.7 10.7 75 128-213 15-89 (267)
269 PRK12615 galactose-6-phosphate 25.9 2.3E+02 0.0049 26.3 6.5 87 117-212 2-88 (171)
270 cd01391 Periplasmic_Binding_Pr 25.7 4.9E+02 0.011 23.3 10.8 72 130-213 18-91 (269)
271 cd06306 PBP1_TorT-like TorT-li 25.5 5.7E+02 0.012 24.1 10.4 72 130-211 17-88 (268)
272 cd06273 PBP1_GntR_like_1 This 25.5 4.9E+02 0.011 24.2 9.3 127 126-270 13-144 (268)
273 COG2984 ABC-type uncharacteriz 25.5 4.5E+02 0.0098 26.8 9.1 71 129-211 46-116 (322)
274 cd08189 Fe-ADH5 Iron-containin 25.5 7.4E+02 0.016 25.3 12.4 54 329-387 254-307 (374)
275 PF02608 Bmp: Basic membrane p 25.4 2.6E+02 0.0056 27.8 7.5 74 129-213 20-94 (306)
276 cd00423 Pterin_binding Pterin 25.3 2E+02 0.0044 28.0 6.6 52 157-213 19-84 (258)
277 cd06292 PBP1_LacI_like_10 Liga 25.2 4.9E+02 0.011 24.4 9.2 77 127-213 14-92 (273)
278 cd06312 PBP1_ABC_sugar_binding 25.1 5.8E+02 0.013 24.0 10.7 76 128-213 16-91 (271)
279 PRK06110 hypothetical protein; 24.9 6.3E+02 0.014 25.3 10.3 103 93-212 95-204 (322)
280 cd06344 PBP1_ABC_ligand_bindin 24.8 5.4E+02 0.012 25.3 9.8 81 107-198 126-209 (332)
281 KOG1116 Sphingosine kinase, in 24.8 1.7E+02 0.0036 32.2 6.2 86 114-213 178-276 (579)
282 cd06331 PBP1_AmiC_like Type I 24.8 3.6E+02 0.0078 26.5 8.5 80 107-197 125-207 (333)
283 cd06386 PBP1_NPR_C_like Ligand 24.7 4.2E+02 0.0091 27.1 9.2 94 107-213 130-230 (387)
284 cd00245 Glm_e Coenzyme B12-dep 24.3 2.5E+02 0.0055 29.8 7.4 70 130-199 151-223 (428)
285 cd00950 DHDPS Dihydrodipicolin 24.3 5.7E+02 0.012 24.9 9.7 83 125-210 17-101 (284)
286 smart00852 MoCF_biosynth Proba 24.2 2.1E+02 0.0046 24.6 5.9 58 129-197 18-78 (135)
287 cd06271 PBP1_AglR_RafR_like Li 24.2 5.3E+02 0.012 23.8 9.2 75 126-213 17-91 (268)
288 cd06370 PBP1_Speract_GC_like L 24.2 5.7E+02 0.012 26.1 10.1 90 108-205 130-222 (404)
289 PRK13978 ribose-5-phosphate is 24.1 1.1E+02 0.0023 29.7 4.2 38 178-215 20-59 (228)
290 PRK00025 lpxB lipid-A-disaccha 24.1 3.7E+02 0.0079 27.0 8.5 43 162-210 72-115 (380)
291 COG0075 Serine-pyruvate aminot 24.0 3.3E+02 0.0071 28.5 8.0 103 94-209 58-166 (383)
292 cd06367 PBP1_iGluR_NMDA N-term 24.0 7.3E+02 0.016 24.7 10.9 97 107-213 129-230 (362)
293 cd06267 PBP1_LacI_sugar_bindin 23.8 5.6E+02 0.012 23.3 11.1 86 107-198 109-197 (264)
294 cd01391 Periplasmic_Binding_Pr 23.8 5.3E+02 0.012 23.1 10.5 107 96-211 102-217 (269)
295 TIGR03884 sel_bind_Methan sele 23.7 2E+02 0.0044 22.8 4.9 24 159-185 26-49 (74)
296 COG0054 RibH Riboflavin syntha 23.6 4E+02 0.0086 24.2 7.4 64 115-186 12-79 (152)
297 PF13344 Hydrolase_6: Haloacid 23.5 2.7E+02 0.0059 22.8 6.2 84 97-195 10-96 (101)
298 TIGR01274 ACC_deam 1-aminocycl 23.5 7.7E+02 0.017 24.8 10.9 49 161-210 172-221 (337)
299 PF06792 UPF0261: Uncharacteri 23.4 1.6E+02 0.0034 31.1 5.6 35 180-214 95-129 (403)
300 PF02887 PK_C: Pyruvate kinase 23.3 4.3E+02 0.0092 22.1 7.5 71 106-187 30-101 (117)
301 KOG1209 1-Acyl dihydroxyaceton 23.0 2.2E+02 0.0047 27.8 5.9 67 372-440 41-109 (289)
302 cd01537 PBP1_Repressors_Sugar_ 23.0 5.8E+02 0.013 23.2 10.3 85 106-197 110-197 (264)
303 cd06380 PBP1_iGluR_AMPA N-term 23.0 7.8E+02 0.017 24.7 11.6 99 106-213 118-219 (382)
304 cd06269 PBP1_glutamate_recepto 22.5 6.3E+02 0.014 23.5 11.7 96 106-213 132-230 (298)
305 PF06415 iPGM_N: BPG-independe 22.4 3E+02 0.0066 26.5 6.9 57 120-177 35-96 (223)
306 COG3640 CooC CO dehydrogenase 22.2 3E+02 0.0065 27.0 6.8 26 117-142 158-184 (255)
307 TIGR01093 aroD 3-dehydroquinat 22.1 6.8E+02 0.015 23.7 10.0 80 128-213 104-188 (228)
308 COG0794 GutQ Predicted sugar p 22.1 6.1E+02 0.013 24.1 8.8 90 116-224 39-129 (202)
309 PF04392 ABC_sub_bind: ABC tra 21.9 2.7E+02 0.0059 27.3 6.9 92 107-210 122-217 (294)
310 PF00456 Transketolase_N: Tran 21.9 2.2E+02 0.0049 29.0 6.3 70 373-443 195-274 (332)
311 cd06277 PBP1_LacI_like_1 Ligan 21.8 6.6E+02 0.014 23.4 9.8 73 127-213 17-89 (268)
312 PF09670 Cas_Cas02710: CRISPR- 21.7 6.6E+02 0.014 26.0 9.9 98 109-213 7-105 (379)
313 TIGR00177 molyb_syn molybdenum 21.6 3.6E+02 0.0077 23.6 6.9 56 131-197 29-87 (144)
314 PRK13566 anthranilate synthase 21.5 3.9E+02 0.0084 30.4 8.6 80 115-214 526-608 (720)
315 cd06310 PBP1_ABC_sugar_binding 21.5 6.7E+02 0.014 23.4 10.9 74 130-212 17-90 (273)
316 COG0634 Hpt Hypoxanthine-guani 21.4 1.3E+02 0.0028 28.0 3.9 81 114-210 92-173 (178)
317 PRK06490 glutamine amidotransf 21.4 5.1E+02 0.011 24.9 8.5 81 115-213 7-95 (239)
318 cd06309 PBP1_YtfQ_like Peripla 21.1 5.4E+02 0.012 24.1 8.7 74 129-213 16-89 (273)
319 cd01545 PBP1_SalR Ligand-bindi 21.1 6.7E+02 0.014 23.2 9.4 75 127-213 14-89 (270)
320 TIGR00215 lpxB lipid-A-disacch 21.1 7.6E+02 0.016 25.3 10.2 86 116-210 6-119 (385)
321 TIGR01118 lacA galactose-6-pho 21.1 3E+02 0.0065 24.6 6.2 83 117-210 2-84 (141)
322 PRK03170 dihydrodipicolinate s 21.0 7.5E+02 0.016 24.2 9.8 82 126-210 19-102 (292)
323 cd06318 PBP1_ABC_sugar_binding 20.9 7E+02 0.015 23.4 10.0 72 129-213 16-89 (282)
324 PHA02780 hypothetical protein; 20.9 1.7E+02 0.0036 22.3 3.8 37 368-404 32-71 (73)
325 cd06376 PBP1_mGluR_groupIII Li 20.6 8.3E+02 0.018 25.5 10.6 86 107-202 165-253 (463)
326 COG1171 IlvA Threonine dehydra 20.5 6.4E+02 0.014 26.0 9.2 47 164-213 165-211 (347)
327 TIGR03023 WcaJ_sugtrans Undeca 20.4 6.7E+02 0.014 26.3 9.8 49 163-213 179-227 (451)
328 cd05007 SIS_Etherase N-acetylm 20.2 6.4E+02 0.014 24.5 9.0 47 165-211 105-152 (257)
No 1
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-80 Score=613.31 Aligned_cols=359 Identities=58% Similarity=0.945 Sum_probs=338.0
Q ss_pred CeEEEEecCCCceeEEEccCcCCChhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcH
Q 013271 82 PTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNM 161 (446)
Q Consensus 82 ~~~~~~~~~~~~~~I~~G~g~~~~~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~ 161 (446)
|.++.+.+++++|+|++|+|.+++. .+.+...++|++||||+++.++|.+++...|+..| +.+..+++|+||..||+
T Consensus 1 ~~~~~v~l~~~~y~I~ig~gl~~~~-~l~~~~~~~k~~ivtd~~v~~~y~~~~~~~l~~~g--~~v~~~~lp~GE~~Ksl 77 (360)
T COG0337 1 MQTITVTLGERSYPIYIGSGLLSDA-ELAELLAGRKVAIVTDETVAPLYLEKLLATLEAAG--VEVDSIVLPDGEEYKSL 77 (360)
T ss_pred CceEEEecCCCceeEEEeCCcccch-hhhhhccCCeEEEEECchhHHHHHHHHHHHHHhcC--CeeeEEEeCCCcccccH
Confidence 5678999999999999999999954 23333246799999999999999999999999999 46777899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCccccccccc
Q 013271 162 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 241 (446)
Q Consensus 162 ~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~ 241 (446)
++++++++.+.+.+++|++.|||+|||+++|+++|+|++|+||+++|+|||||+||+||++|+|++||++.+||++|+||
T Consensus 78 ~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~Aaty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~ 157 (360)
T COG0337 78 ETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAAATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFY 157 (360)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhhhh
Q 013271 242 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESG 321 (446)
Q Consensus 242 ~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~~G 321 (446)
+|++|++||+++.|||+|++++|++|+|||+++.|.++|+|++++.+.+.+.+. .+.++|.+||+.|.++|.+|++|.|
T Consensus 158 qP~aVi~D~~~L~TLp~re~~~G~AEvIK~g~I~D~~~f~~Le~~~~~l~~~~~-~l~~~I~rs~~~Ka~VV~~De~E~G 236 (360)
T COG0337 158 QPKAVLIDTDFLKTLPPRELRAGMAEVIKYGLIADPEFFDWLEENLDALLALDP-ALEELIARSCQIKAEVVAQDEKESG 236 (360)
T ss_pred CCcEEEEchHHhccCCHHHHHHhHHHHHHHhhhcCHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhhHHhhcCccchh
Confidence 999999999999999999999999999999999999999999998555555554 4889999999999999999999999
Q ss_pred hHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Q 013271 322 LRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSI 401 (446)
Q Consensus 322 ~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~~ 401 (446)
+|+.||+|||||||+|+.++|+.|+||||||+||.+++++++++|+++.+.++|+.++++++|+|+..++.++.+.+.+.
T Consensus 237 ~R~~LN~GHT~GHAiE~~~~y~~~~HGeAVaiGmv~aa~ls~~lG~~~~~~~~r~~~~L~~~gLP~~~~~~~~~~~l~~~ 316 (360)
T COG0337 237 LRAILNLGHTFGHAIEALTGYGKWLHGEAVAIGMVMAARLSERLGLLDKADAERILNLLKRYGLPTSLPDELDAEKLLEA 316 (360)
T ss_pred hHHHHhcchHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCccCCCcCCHHHHHHH
Confidence 99999999999999999999966999999999999999999999999999999999999999999999876899999999
Q ss_pred HHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHhh
Q 013271 402 MAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 445 (446)
Q Consensus 402 l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~~ 445 (446)
|..|||+++|+++||+|++ ||++....+++++++.++++.+++
T Consensus 317 m~~DKK~~~g~i~~vl~~~-iG~~~~~~~v~~~~l~~~l~~~~~ 359 (360)
T COG0337 317 MARDKKVLGGKIRFVLLKE-IGKAEIAEGVDEELLLDALEEVHA 359 (360)
T ss_pred HhhcccccCCceEEEeehh-cCceEeecCCCHHHHHHHHHHHhc
Confidence 9999999999999999998 999999988999999999998875
No 2
>PLN02834 3-dehydroquinate synthase
Probab=100.00 E-value=1.3e-72 Score=585.42 Aligned_cols=368 Identities=82% Similarity=1.306 Sum_probs=342.8
Q ss_pred CCCCeEEEEecCCCceeEEEccCcCCChhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCC
Q 013271 79 SKAPTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENY 158 (446)
Q Consensus 79 ~~~~~~~~~~~~~~~~~I~~G~g~~~~~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~ 158 (446)
+..|.++.|++++++|+|+||+|++++++++.....++|++||||+++++.+.+++.+.|++.|+++.+..+++++||++
T Consensus 64 ~~~m~~~~v~~~~~~y~I~iG~g~l~~~~~l~~~~~g~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ 143 (433)
T PLN02834 64 ATVTTVVKVDLGDRSYPIYIGSGLLDHGELLQRHVHGKRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKY 143 (433)
T ss_pred cccceEEEEecCCcceeEEEeCCcccCHHHHhhccCCCEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCC
Confidence 33688899999999999999999998866665432468999999999999999999999999886444444678999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIG 238 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig 238 (446)
|++++++++++.++++++||+|+|||||||+++|+|||+|++|++|+|+|+||||++|++|+++++|++++.+.+||++|
T Consensus 144 ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y~rgiplI~VPTTllA~vDss~ggK~~i~~~~~KNlig 223 (433)
T PLN02834 144 KDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASYQRGVNFVQIPTTVMAQVDSSVGGKTGVNHPLGKNMIG 223 (433)
T ss_pred CCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHhcCCCCEEEECCcCCeEEecCCCceeEEecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchh
Q 013271 239 AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEK 318 (446)
Q Consensus 239 ~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~ 318 (446)
.|+.|.+||+||+++.|+|++++++|++|+|||+++.|.++|+|++.+..++++.+...+.+++.++|..|.+++..|++
T Consensus 224 ~f~~P~~VivDp~~l~tlP~r~~~sG~~E~iK~~~i~d~~~fe~l~~~~~~~~~~~~~~l~~~i~~s~~~K~~vv~~d~~ 303 (433)
T PLN02834 224 AFYQPQCVLIDTDTLATLPDRELASGIAEVVKYGLIRDAEFFEWQEANMEKLLARDPGALAYAIKRSCENKAEVVSLDEK 303 (433)
T ss_pred cccCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHHhcCHHHHHHHHhhHHhHhccCHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999999999999999999999999999998877888777788899999999999999999999
Q ss_pred hhhhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHH
Q 013271 319 ESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMF 398 (446)
Q Consensus 319 ~~G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~ 398 (446)
|.|+|+.||+|||||||||..++|+.++||||||+||.+++++++++|+++.+.++++.++++++|+|+++++.++.+++
T Consensus 304 e~G~r~~Ln~GHT~gHAiE~~~~~~~~~HGeaVaiGm~~~~~ls~~~G~~~~~~~~~i~~ll~~~gLP~~~~~~~~~~~~ 383 (433)
T PLN02834 304 ESGLRATLNLGHTFGHAIETGPGYGEWLHGEAVAAGTVMAADMSYRLGWIDMSLVNRIFALLKRAKLPTNPPEKMTVEMF 383 (433)
T ss_pred ccchhhhhcCcHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCcccccCCHHHH
Confidence 99999999999999999999777767999999999999999999999999999999999999999999998876889999
Q ss_pred HHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHhhC
Q 013271 399 KSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS 446 (446)
Q Consensus 399 ~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~~~ 446 (446)
.+.|..|||+++|+++||||+++||+|.+..+++++++.++++++|++
T Consensus 384 ~~~~~~dkK~~~~~i~~vl~~~~iG~~~~~~~~~~~~l~~~l~~~~~~ 431 (433)
T PLN02834 384 KSLMAVDKKVADGLLRLILLKGELGNCVFTGDFDREALEETLRAFCKS 431 (433)
T ss_pred HHHHhhcccccCCeEEEEEecCCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999449999999999999999999988864
No 3
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=100.00 E-value=5.3e-68 Score=539.05 Aligned_cols=348 Identities=33% Similarity=0.459 Sum_probs=320.3
Q ss_pred ceeEEEccCcCCC-hhHhhh------cCCCCEEEEEECCCchhHH---HHHHHHHHhcCCCCee--EEEEEeCCCCCCCc
Q 013271 93 SYPIYIGSGLLDH-PDLLQK------HVQGKKVLVVTNNTVAPLY---LDKVTDALTRGNPNVS--VENVILPDGENYKN 160 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~------~~~~k~vliVtd~~v~~~~---~~~v~~~L~~~gi~~~--v~~~i~~~ge~~~t 160 (446)
+|+|++|+|.+++ ++.+.+ ....+|++||||+++.++| .+++.+.|+++|+.+. +..+++++||+.|+
T Consensus 1 ~y~v~i~~~~~~~~~~~l~~~~~~~~~~~~~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~ 80 (369)
T cd08198 1 DYPVHFTRRAFSPENPLLADLLSAKEGGARPKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKN 80 (369)
T ss_pred CceEEEeCCchhhhHHHHHhhhccccccCCCeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCC
Confidence 4899999999999 887763 1135899999999999864 5899999988875433 45677899999888
Q ss_pred H-HHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCccccccc
Q 013271 161 M-DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGA 239 (446)
Q Consensus 161 ~-~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~ 239 (446)
. +++.++++.+.++++||+|+|||||||+++|+|||+|++|+||+|+|+||||++|++||++++++++|....||++|+
T Consensus 81 ~~~~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~~~rGip~I~IPTTlla~vDs~~g~k~~vn~~~~knlvg~ 160 (369)
T cd08198 81 DPDLVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAATAHRGVRLIRIPTTVLAQNDSGVGVKNGINAFGKKNFLGT 160 (369)
T ss_pred hHHHHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHHhcCCCCEEEECCCchhhhCCCeeeeecccCCCCcceecc
Confidence 5 899999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred ccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHh--hcch
Q 013271 240 FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVV--SLDE 317 (446)
Q Consensus 240 ~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v--~~d~ 317 (446)
|++|..|++||+++.|+|++++++|++|++||+++.|+++|++++++..++...+.+.+.++|.+|+..|.+++ +.|+
T Consensus 161 f~~P~~viiDp~~l~tlP~r~~~~G~aE~iK~~~i~d~~l~~~l~~~~~~~~~~~~~~~~~ii~~s~~~K~~~v~~~~D~ 240 (369)
T cd08198 161 FAPPYAVINDFAFLTTLPDRDKRAGLAEAVKVALIKDAAFFEWLEENAAALASFDPDVMEELIRRCAELHLEHIAAGGDP 240 (369)
T ss_pred ccCCCEEEEcHHHHhhCCHHHHHhhHHHHHHHHhhCCHHHHHHHHhhHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 99999999999999999999999999999999999999999999987777776677778899999999999988 8999
Q ss_pred hhhhhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-----
Q 013271 318 KESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT----- 392 (446)
Q Consensus 318 ~~~G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~----- 392 (446)
+|+|.|+.||||||||||+|..++| .++||||||+||.+++++++++|+++++..+++.++++++|+|++++..
T Consensus 241 ~e~g~r~~Ln~GHT~gHAlE~~~~~-~~~HGeAVaiGm~~~~~ls~~~g~~~~~~~~~i~~~l~~~glp~~~~~~~~~~~ 319 (369)
T cd08198 241 FELGSARPLDFGHWSAHKLEQLSNY-ALRHGEAVAIGIALDTLYSVLLGLLSEAEAERVLALLEALGFPLWHPALERRDS 319 (369)
T ss_pred hhccccccccccchhHHHHHhcCCC-CCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCcchhhccccC
Confidence 9999999999999999999998877 7999999999999999999999999999999999999999999998753
Q ss_pred CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 393 MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 393 i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
++.+++.+.|.+|||+++|+++|+||++ ||++.+..+++++++++++++
T Consensus 320 ~~~~~~~~~~~~dKK~~~g~i~~vl~~~-iG~~~~~~~v~~~~i~~~~~~ 368 (369)
T cd08198 320 KGELEVLKGLEEFREHLGGELTITLLTG-IGRGIEVHEIDLELLEEAIDE 368 (369)
T ss_pred CCHHHHHHHHHHhhcccCCeEEEEEEcC-CCcEEEECCCCHHHHHHHHHh
Confidence 2789999999999999999999999998 999999889999999998865
No 4
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=100.00 E-value=8.5e-68 Score=538.02 Aligned_cols=344 Identities=34% Similarity=0.560 Sum_probs=321.4
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
.|+|+||+|++++ ++++... +.+|++||||+++.+.+.+++.+.|++.|+ ++..++++++|++|++++++++++.+
T Consensus 1 ~y~v~~G~g~l~~l~~~l~~~-g~~rvlvVtd~~v~~~~~~~l~~~L~~~g~--~~~~~~~~~~e~~k~~~~v~~~~~~~ 77 (355)
T cd08197 1 RFPYYLGENILDSVLGYLPEL-NADKYLLVTDSNVEDLYGHRLLEYLREAGA--PVELLSVPSGEEHKTLSTLSDLVERA 77 (355)
T ss_pred CeEEEEcCChHHHHHHHHHhc-CCCeEEEEECccHHHHHHHHHHHHHHhcCC--ceEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 3889999999999 8888875 458999999999998899999999999984 55567789999999999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEEehH
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTD 251 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiDp~ 251 (446)
+++++||+|+|||||||+++|+|||+|+.|++++|+|+||||++|++||.+++++++|...+||+++.|++|.+||+||+
T Consensus 78 ~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~~rgip~I~IPTTlla~~da~i~~k~~vn~~~~kn~~g~~~~P~~vivDp~ 157 (355)
T cd08197 78 LALGATRRSVIVALGGGVVGNIAGLLAALLFRGIRLVHIPTTLLAQSDSVLSLKQAVNSTYGKNLIGLYYPPSFIFIDTR 157 (355)
T ss_pred HHcCCCCCcEEEEECCcHHHHHHHHHHHHhccCCCEEEecCcccccccccccCceeeeCCCCcceeecCCCCcEEEEcHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred hhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhhhhhHhhcCcchh
Q 013271 252 TLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHT 331 (446)
Q Consensus 252 ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~~G~r~~l~~gHt 331 (446)
++.++|++++++|++|++||+++.|+++|++++.+..++...+.+.+.++|.+|++.|.++++.|++|.|+|+.||||||
T Consensus 158 ~l~tlP~~~~~aG~~d~ik~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~s~~~k~~vv~~D~~e~g~r~~Ln~GHT 237 (355)
T cd08197 158 VLRTLPERQIRSGLCETVKNALAQEPDFLPYLESDLRNALDYDPDGLEEIIRLSIEAKLPVLSGDPYEKKLGLILEYGHT 237 (355)
T ss_pred HHhhCCHHHHHhhHHHHHHHHHhcCHHHHHHHHHhHHHhhccCHHHHHHHHHHHHHHHHHHhcCCCCccccchhhhCccc
Confidence 99999999999999999999999999999999987777777777788999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhHhhcCC
Q 013271 332 FGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADG 411 (446)
Q Consensus 332 i~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~~l~~dkk~~~g 411 (446)
||||||..++ +.++||||||+||.++++++.++|+++.+..+++.++++++|+|+.++..++.+++.+.|..|||++++
T Consensus 238 ~ghalE~~~~-~~~~HGeaVa~Gm~~~~~ls~~~g~~~~~~~~~i~~~l~~~~lp~~~~~~~~~~~~~~~~~~dkk~~~~ 316 (355)
T cd08197 238 VGHAVELLSQ-GGLTHGEAVAIGMLVAAEIARRMGLLSEEDVALHYELLSKLGLPTRIPSDISLDDILHRVRYDNKRGYI 316 (355)
T ss_pred ccHHHHhhcC-CCcChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHhccCccCC
Confidence 9999998764 369999999999999999999999999999999999999999999887657899999999999999999
Q ss_pred -----ceEEEeecCCCCceeEc-----CCCCHHHHHHHHH
Q 013271 412 -----LLRLILLKGPLGNCVFT-----GDYDRKALDDTLY 441 (446)
Q Consensus 412 -----~~~~vll~~~iG~~~~~-----~~~~~~~l~~~l~ 441 (446)
+++||||++ +|++.+. .++++++++++++
T Consensus 317 ~~~~~~~~~vl~~~-iG~~~~~~~~~~~~~~~~~~~~~~~ 355 (355)
T cd08197 317 PLDADQVPMVLLEG-LGKPAGTNGTPLTPVPLEVIKEAIE 355 (355)
T ss_pred CCCCCeEEEEEEcC-CCcEEEecCcccCCCCHHHHHHHhC
Confidence 999999998 9999885 4799999988763
No 5
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=100.00 E-value=5.9e-67 Score=531.37 Aligned_cols=344 Identities=56% Similarity=0.917 Sum_probs=318.7
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
+|+|+||+|++++ ++++......+|++||||+++++.+.+++.+.|++.|+ ++..++++++|++|++++++++++.+
T Consensus 1 ~y~i~~G~g~~~~l~~~~~~~~~~~~~livtd~~~~~~~~~~l~~~L~~~g~--~~~~~~~~~~e~~~~~~~v~~~~~~~ 78 (345)
T cd08195 1 SYPIYIGSGLLKELGELLAKLPKGSKILIVTDENVAPLYLEKLKAALEAAGF--EVEVIVIPAGEASKSLETLEKLYDAL 78 (345)
T ss_pred CeeEEEcCchHhHHHHHHHhccCCCeEEEEECCchHHHHHHHHHHHHHhcCC--ceEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 4899999999999 88765433468999999999999899999999999884 55667889999999999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEEehH
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTD 251 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiDp~ 251 (446)
++++++|+|+|||||||+++|+|||+|+.|++++|+|+||||++|++||++++|++++.+..||+++.|++|.+||+||+
T Consensus 79 ~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~rgip~i~VPTT~~a~vds~~~~k~~i~~~~~kn~~g~~~~P~~viiD~~ 158 (345)
T cd08195 79 LEAGLDRKSLIIALGGGVVGDLAGFVAATYMRGIDFIQIPTTLLAQVDSSVGGKTGVNHPLGKNLIGAFYQPKLVLIDTD 158 (345)
T ss_pred HHcCCCCCCeEEEECChHHHhHHHHHHHHHhcCCCeEEcchhHHHHhhccCCCcceecCCCCCceecccCCCCEEEEehH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred hhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhhhhhHhhcCcchh
Q 013271 252 TLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHT 331 (446)
Q Consensus 252 ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~~G~r~~l~~gHt 331 (446)
++.|+|++++++|++|++||+++.||.+|++++.+.......+.+.+.+++.+++..|.+++..|+++.|+|+.+|+|||
T Consensus 159 ~l~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~k~~~v~~d~~e~~~r~~ln~GHt 238 (345)
T cd08195 159 FLKTLPEREFRSGLAEVIKYGLIADAELFEWLEENKEAILALDPEALEEIIARSCEIKAEVVEQDEREKGLRAILNFGHT 238 (345)
T ss_pred HhhhCCHHHHHhHHHHHHHHHhhCCHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHHHHHHhccCccccCCceeecCccc
Confidence 99999999999999999999999999999999876655555566778999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhHhhcCC
Q 013271 332 FGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADG 411 (446)
Q Consensus 332 i~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~~l~~dkk~~~g 411 (446)
|+||||...++.+++||++||+||.++++++.++|+++.+..+++.++++++|+|+.++ .++.+++.+.|..|||+++|
T Consensus 239 ~gHalE~~~~~~~~~HGeaVaiGm~~~~~l~~~~g~~~~~~~~~i~~~l~~~g~p~~~~-~~~~~~~~~~l~~dkk~~~~ 317 (345)
T cd08195 239 FGHAIEALTGYGTLLHGEAVAIGMVAAARLSERLGLLSEEDLERIEKLLKKLGLPTSLP-DLDAEDLLEAMKHDKKNRGG 317 (345)
T ss_pred chHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHHHhhcccCC
Confidence 99999998654479999999999999999999999999999999999999999999874 47999999999999999999
Q ss_pred ceEEEeecCCCCceeEcCCCCHHHHHHHH
Q 013271 412 LLRLILLKGPLGNCVFTGDYDRKALDDTL 440 (446)
Q Consensus 412 ~~~~vll~~~iG~~~~~~~~~~~~l~~~l 440 (446)
+++++||++ +|++.+..+++++++.+++
T Consensus 318 ~~~~vl~~~-iG~~~~~~~v~~~~l~~~~ 345 (345)
T cd08195 318 KIRFVLLKG-IGKAVIVKDVPEEELREAL 345 (345)
T ss_pred cEEEEEEcC-CcceEEeCCCCHHHHHHhC
Confidence 999999998 9999998889999998764
No 6
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=100.00 E-value=3e-66 Score=528.58 Aligned_cols=354 Identities=58% Similarity=0.946 Sum_probs=328.0
Q ss_pred EEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHH
Q 013271 86 EVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTL 164 (446)
Q Consensus 86 ~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v 164 (446)
.+.++++|++|+||+|++++ +++++.. +.+|++||||+++.+.+.+++.+.|++.|+ ++..++++++|++|+++++
T Consensus 2 ~~~~~~~~~~v~~G~g~~~~l~~~l~~~-~~~~~livtd~~~~~~~~~~v~~~L~~~gi--~~~~~~~~~~e~~~~~~~v 78 (358)
T PRK00002 2 TVDLGERSYPIIIGKGLLSELGELLAPL-KGKKVAIVTDETVAPLYLEKLRASLEAAGF--EVDVVVLPDGEQYKSLETL 78 (358)
T ss_pred eecCCCCCCcEEEeCChHHHHHHHHHhc-CCCeEEEEECCchHHHHHHHHHHHHHhcCC--ceEEEEeCCCCCCCCHHHH
Confidence 35567789999999999999 9888875 468999999999988899999999999885 4555678999999999999
Q ss_pred HHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCce
Q 013271 165 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQ 244 (446)
Q Consensus 165 ~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~ 244 (446)
+++++.+++++++|.|+||||||||++|+||++|+.|.+++|+|+||||++|++|++++++++++.+.+||+++.++.|.
T Consensus 79 ~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~~gip~i~IPTT~~s~~ds~~~~k~~i~~~~~K~~~g~~~~P~ 158 (358)
T PRK00002 79 EKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATYMRGIRFIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPK 158 (358)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHhcCCCCEEEcCchhhhccccCcCCceecCCcccceeeeecCCCc
Confidence 99999999999988999999999999999999999999999999999999889999999999999888899999999999
Q ss_pred EEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhhhhhHh
Q 013271 245 CVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRA 324 (446)
Q Consensus 245 ~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~~G~r~ 324 (446)
.+|+||+++.++|++++++|++|++||+++.||.+|+++..+..+..+.+.+.+.+++.+++..|.+++.+|+++.|+|+
T Consensus 159 ~vi~Dp~l~~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~k~~~v~~d~~e~g~r~ 238 (358)
T PRK00002 159 AVLIDLDFLKTLPERELRAGLAEVIKYGLIADPEFFEWLEANVDALLALDGEALEEAIARSCEIKADVVAADERESGLRA 238 (358)
T ss_pred eEEEcHHHHccCCHHHHHhhHHHHHHHHhhCCHHHHHHHHhhHHHHhhcCHHHHHHHHHHHHHHHHHHHcCCCccccccH
Confidence 99999999999999999999999999999999999999987666665556678889999999999999999999999999
Q ss_pred hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHH
Q 013271 325 TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAV 404 (446)
Q Consensus 325 ~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~~l~~ 404 (446)
.+||||||+||||..+++.+++||++||+||.++++++.++|.++.+..+++.++|+++|+|+.++ .++.+++.+.|..
T Consensus 239 ~ln~GHt~~HalE~~~~~~~~~HG~aVa~Gm~~~~~l~~~~g~~~~~~~~~~~~~l~~~g~p~~~~-~~~~~~~~~~l~~ 317 (358)
T PRK00002 239 LLNFGHTFGHAIEAETGYGKWLHGEAVAIGMVMAARLSERLGLLSEADAERIRALLERAGLPTSLP-DLDAEALLEAMKR 317 (358)
T ss_pred HHhccchHHHHHhcccCCCCcChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHHH
Confidence 999999999999998654369999999999999999999999999899999999999999999987 5799999999999
Q ss_pred hHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHh
Q 013271 405 DKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 444 (446)
Q Consensus 405 dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~ 444 (446)
|||+|+|++++|||++ +|++.+..+++++++.++++++.
T Consensus 318 dkk~~~~~~~~vl~~~-ig~~~~~~~v~~~~l~~~~~~~~ 356 (358)
T PRK00002 318 DKKVRGGKLRFVLLKG-IGKAVIAEDVDDELLLAALEECL 356 (358)
T ss_pred hhhccCCCEEEEEecC-CccEEEeCCCCHHHHHHHHHHHh
Confidence 9999999999999998 99999998999999999998764
No 7
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=100.00 E-value=5.7e-66 Score=523.29 Aligned_cols=340 Identities=37% Similarity=0.623 Sum_probs=317.2
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhc-CCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~-~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
+|+|+||+|++++ +++++.+ +.+|++||||+++.+.+.+++.+.|++ .+ +..++++++|++|++++++++++.
T Consensus 1 ~y~v~~G~g~l~~l~~~~~~~-~~~k~livtd~~v~~~~~~~v~~~L~~~~~----~~~~~~~~~e~~k~~~~v~~~~~~ 75 (344)
T cd08169 1 NYNVAFGEHVLESVESYTTRD-LFDQYFFISDSGVADLIAHYIAEYLSKILP----VHILVIEGGEEYKTFETVTRILER 75 (344)
T ss_pred CccEEEcCChHHHHHHHHHhc-CCCeEEEEECccHHHHHHHHHHHHHHhhcC----ceEEEeCCCCCCCCHHHHHHHHHH
Confidence 3889999999999 8888775 468999999999999999999999987 55 345678999999999999999999
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEEeh
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDT 250 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiDp 250 (446)
+++++.+|.|+|||||||+++|+||++|++|++++|+|+||||++|++||++|++++++....||+++.|++|..||+||
T Consensus 76 ~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~rgip~i~VPTTlla~~ds~~g~k~~i~~~~~kn~~g~~~~P~~viiDp 155 (344)
T cd08169 76 AIALGANRRTAIVAVGGGATGDVAGFVASTLFRGIAFIRVPTTLLAQSDSGVGGKTGINLKGGKNLLGTFYPPRAVFLDL 155 (344)
T ss_pred HHHcCCCCCcEEEEECCcHHHHHHHHHHHHhccCCcEEEecCCcccccccCccceEeEecCCCceeecccCCCCEEEEcH
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhhhhhHhhcCcch
Q 013271 251 DTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGH 330 (446)
Q Consensus 251 ~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~~G~r~~l~~gH 330 (446)
+++.++|++++++|++|++||+++.|+++|++++.+..++...+.+.+.+++.++++.|.+++..|+++.|+|..+||||
T Consensus 156 ~~l~tlP~~~~~~G~~e~ik~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~k~~~v~~d~~e~g~r~~ln~GH 235 (344)
T cd08169 156 RFLKTLPPRQILSGVAEIVKVALIKDAELFELLEDHLNSLNVYSLAVLEEYINRCISIKMSVIVGDEKESGIRRILNYGH 235 (344)
T ss_pred HHHhhCCHHHHHhHHHHHHHHHhhCCHHHHHHHHhhHHHHhhcCHHHHHHHHHHHHHHHhhhccCCcccccchhhhhccc
Confidence 99999999999999999999999999999999987666666556677889999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhHhhcC
Q 013271 331 TFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVAD 410 (446)
Q Consensus 331 ti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~~l~~dkk~~~ 410 (446)
|||||+|..+.+ .++|||+||+||.++++++.++|+++.+.++++.++++++|+|++++..++.+++++.|..|||+++
T Consensus 236 t~gHalE~~~~~-~~~HGeaVa~Gm~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~~~~~~~~~~~~~~~~~dkk~~~ 314 (344)
T cd08169 236 TFGHAIELATDF-GIPHGEAVAVGMIYANVIANRLGLLSEHDYSRIYNLLKKLGLPQDHPLKLDPDSLYHYLLHDKKNGY 314 (344)
T ss_pred hhhHHHhcCCCC-CCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcCCCCCCCHHHHHHHHHHhhcccC
Confidence 999999988655 6999999999999999999999999999999999999999999998755889999999999999998
Q ss_pred -CceEEEeecCCCCceeEcCCCCHHHHHHH
Q 013271 411 -GLLRLILLKGPLGNCVFTGDYDRKALDDT 439 (446)
Q Consensus 411 -g~~~~vll~~~iG~~~~~~~~~~~~l~~~ 439 (446)
|+++||||++ +|++.+..++++++++++
T Consensus 315 ~~~~~~vl~~~-iG~~~~~~~v~~~~~~~a 343 (344)
T cd08169 315 EGNLGMILLKG-VGKPAVVNVVDKTLIKEA 343 (344)
T ss_pred CCcEEEEEEcC-CcceEEeCCCCHHHHHhh
Confidence 9999999998 999999989999998875
No 8
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=100.00 E-value=3.7e-65 Score=516.51 Aligned_cols=338 Identities=30% Similarity=0.457 Sum_probs=312.8
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
+|+|+||+|++++ ++.+ .+|++||||+++.+++.+++.+.|. + + .+.+++++|++|++++++++++.+
T Consensus 1 ~y~V~~G~g~l~~l~~~~-----~~r~lIVtD~~v~~l~~~~l~~~L~--~--~--~~~~~~~~e~~k~l~~v~~~~~~~ 69 (346)
T cd08196 1 DYKVVFGDSLLDSSTIQP-----LENDVFIVDANVAELYRDRLDLPLD--A--A--PVIAIDATEENKSLEAVSSVIESL 69 (346)
T ss_pred CeEEEEcCChHHHHHHhh-----CCeEEEEECccHHHHHHHHHHHHhc--C--C--eEEEeCCCCCCCCHHHHHHHHHHH
Confidence 4889999999988 5433 3799999999999999999999987 2 1 346789999999999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEEehH
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTD 251 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiDp~ 251 (446)
++++++|+|+|||||||+++|+|||+|++|+||+|++.||||++|++||++|+++++|....||++|.|++|..||+||+
T Consensus 70 ~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~~rgi~~i~iPTTlla~vds~ig~k~~vn~~~~Kn~ig~f~~P~~viiD~~ 149 (346)
T cd08196 70 RQNGARRNTHLVAIGGGIIQDVTTFVASIYMRGVSWSFVPTTLLAQVDSCIGSKSSINVGPYKNLVGNFYPPREIYIDPP 149 (346)
T ss_pred HHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCCCeEEecccHHHhhhccccccceecCCCCCcccccCCCCCEEEEchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhhhhhHhhcCcchh
Q 013271 252 TLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHT 331 (446)
Q Consensus 252 ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~~G~r~~l~~gHt 331 (446)
++.|+|.+++++|++|++||+++.|.++|++++.+...+. .+.+.+.+++.++++.|.++++.|++|.|+|..+|||||
T Consensus 150 ~l~tlp~~~~~~G~aEiiK~~~i~~~~~f~~l~~~~~~~~-~~~~~~~~~i~~s~~~K~~vv~~D~~e~g~R~~Ln~GHt 228 (346)
T cd08196 150 FLSTLDEKEIYSGLGEALKICYARGPDVFARYLQLYPVLF-TEHEALSRIIRSSLAIKKWFIEIDEFDQGERLLLNYGHT 228 (346)
T ss_pred HhccCCHHHHHhhHHHHHHHHHhCCHHHHHHHHhhhhhhc-CCHHHHHHHHHHHHHHHHHHhhhCccccCccHHHhccch
Confidence 9999999999999999999999999999999987655443 456778899999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHhHhh
Q 013271 332 FGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAP---PDTMTVEMFKSIMAVDKKV 408 (446)
Q Consensus 332 i~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~---~~~i~~e~~~~~l~~dkk~ 408 (446)
||||+|...++ .++||||||+||.++++++.++|+++.+.++++.++++++|+|+.. +..++.+++.+.|..|||+
T Consensus 229 ~gHAlE~~~~~-~~~HGeaVaiGm~~~~~ls~~~g~~~~~~~~~i~~~l~~~~lp~~~~~~~~~~~~~~~~~~l~~dkk~ 307 (346)
T cd08196 229 FGHALESATNF-AIPHGIAVGLGMLMANTIAVLAGGTMGLHSQELHEVLKKILLPIQEIADLAHIDADTLLAAFAKDKKH 307 (346)
T ss_pred hhHHHHccCCC-CCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHhhCc
Confidence 99999998766 7999999999999999999999999999999999999999999876 2237899999999999999
Q ss_pred cCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHh
Q 013271 409 ADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 444 (446)
Q Consensus 409 ~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~ 444 (446)
++|++++|||++ +|++.+..+++.+++++++.++.
T Consensus 308 ~~~~~~~vL~~~-iG~~~~~~~~~~~~~~~~~~~~~ 342 (346)
T cd08196 308 SGTQLRLILPDA-EGGLFKYVDPKDDEFRALIQEYF 342 (346)
T ss_pred cCCeEEEEEEcc-CCceEEeCCCChHHHHHHHHHHH
Confidence 999999999998 99999999999999999987654
No 9
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=100.00 E-value=7.5e-65 Score=542.49 Aligned_cols=355 Identities=36% Similarity=0.584 Sum_probs=325.1
Q ss_pred eEEEEec-CCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCc
Q 013271 83 TIVEVDL-GQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN 160 (446)
Q Consensus 83 ~~~~~~~-~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t 160 (446)
.++.++. ++.+++|+||+|++++ ++++... ++++++|+|..+. .+.+++.+.|+..|+ .+...+++++|.+|+
T Consensus 177 ~~~~v~~~~~~p~~v~iG~g~l~~l~~~l~~~--g~k~~iV~d~~v~-~~~~~l~~~L~~~g~--~v~~~v~p~~E~~ks 251 (542)
T PRK14021 177 RTVHVTGAGIEPYDVRIGEGAMNHLPQVLGPK--PVKVALIHTQPVQ-RHSDRARTLLRQGGY--EVSDIVIPDAEAGKT 251 (542)
T ss_pred cceEeecCCCCCceEEEcCChHHHHHHHHHhc--CCeEEEEECccHH-HHHHHHHHHHHhCCC--ceEEEEeCCCcccCC
Confidence 4577774 7888999999999999 8888764 4688888888775 488999999999884 566677899999999
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccc
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 240 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~ 240 (446)
+++++++++.+.+++.+|.|+|||||||+++|+|||+|++|+||+|||+||||++|++||++|+|+++|.+.+||++|.|
T Consensus 252 l~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPTTllA~vDss~ggkt~in~~~gkn~ig~f 331 (542)
T PRK14021 252 IEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPTSLLAMVDASTGGKTGINTPQGKNLVGSF 331 (542)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCChHHhhhccccCCceEEECCCCceeEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCC---------HHHHHHHHHHHHHhhHh
Q 013271 241 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD---------PRAFAYAIKRSCENKAE 311 (446)
Q Consensus 241 ~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~---------~~~l~~~i~~s~~~~~~ 311 (446)
++|..|++|++++.|+|.+++++|++|++||+++.||++|++++.+..++...+ .+.+.++|.+|+..|.+
T Consensus 332 ~~P~~V~iD~~~l~tlP~r~~~aG~gE~iK~~~i~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~si~~K~~ 411 (542)
T PRK14021 332 YTPAGVLADTKTLATLPNDIFIEGLGEVAKSGFIRDPEILRILEDHAAELRAFDGSTFLGSPLEDVVAELIERTVKVKAY 411 (542)
T ss_pred cCCCEEEEeHHHHhhCCHHHHHhhHHHHHHHHhhCCHHHHHHHHhhHHHHhhhccccccccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987655443221 35678899999999999
Q ss_pred HhhcchhhhhhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCC
Q 013271 312 VVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPD 391 (446)
Q Consensus 312 ~v~~d~~~~G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~ 391 (446)
+++.|++|.|+|+.||||||||||||..++| .++||||||+||.++++++.++|+++.+..+++.++++++|+|+.+++
T Consensus 412 vv~~D~~e~g~r~~Ln~GHT~gHaiE~~~~~-~~~HGeaVa~Gm~~~~~ls~~~g~~~~~~~~~i~~ll~~~~lp~~~~~ 490 (542)
T PRK14021 412 HVSSDLKEAGLREFLNYGHTLGHAIEKLEHF-RWRHGNAVAVGMVYAAELAHLLGYIDQDLVDYHRSLLASLGLPTSWNG 490 (542)
T ss_pred HhcCCCccccchHHHhccchhhHHHHcccCC-CCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcCCCC
Confidence 9999999999999999999999999998777 799999999999999999999999999999999999999999998764
Q ss_pred CCCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHhh
Q 013271 392 TMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 445 (446)
Q Consensus 392 ~i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~~ 445 (446)
++.+++...|..|||+++|+++||||++ +|++.+..+++.+++.+++++.++
T Consensus 491 -~~~~~~~~~~~~dkK~~~~~i~~vl~~~-iG~~~~~~~v~~~~~~~~~~~~~~ 542 (542)
T PRK14021 491 -GSFDDVLALMHRDKKARGNELRFVVLDE-IGHPVHLDNPPAEAVEEAFRRIQQ 542 (542)
T ss_pred -CCHHHHHHHHHHhcCccCCeEEEEEECC-CCCEEEeCCCCHHHHHHHHHHHhC
Confidence 4778899999999999999999999998 999999889999999999987664
No 10
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=100.00 E-value=3e-64 Score=511.44 Aligned_cols=341 Identities=48% Similarity=0.776 Sum_probs=315.9
Q ss_pred eeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHH
Q 013271 94 YPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAI 172 (446)
Q Consensus 94 ~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~ 172 (446)
|+|+||+|++++ +++++. ++|++||||+.+++.+.+++.+.|++.|+ ++.+++++++|++|++++++++++.++
T Consensus 1 ~~v~~G~g~l~~l~~~l~~---~~~~livtd~~~~~~~~~~v~~~L~~~g~--~~~~~~~~~~e~~~~~~~v~~~~~~~~ 75 (344)
T TIGR01357 1 YPVHVGEGLLDQLVEELAE---PSKLVIITDETVADLYADKLLEALQALGY--NVLKLTVPDGEESKSLETVQRLYDQLL 75 (344)
T ss_pred CeEEEeCChHHHHHHHhhc---CCeEEEEECCchHHHHHHHHHHHHHhcCC--ceeEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 678999999999 888875 48999999999998899999999999885 445567899999999999999999999
Q ss_pred HcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEEehHh
Q 013271 173 ESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDT 252 (446)
Q Consensus 173 ~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiDp~l 252 (446)
+++++|.|+||||||||++|+||++|+.+.+++|+|+||||+.|++|+++++|++++.+..||.++.++.|..+|+||++
T Consensus 76 ~~~~~r~d~IIavGGGsv~D~aK~iA~~~~~~~p~i~VPTT~~a~~ds~~~~k~~i~~~~~kn~~~~~~~P~~viiDp~l 155 (344)
T TIGR01357 76 EAGLDRSSTIIALGGGVVGDLAGFVAATYMRGIRFIQVPTTLLAMVDSSVGGKTGINFPGGKNLIGTFYQPKAVLIDPDF 155 (344)
T ss_pred HcCCCCCCEEEEEcChHHHHHHHHHHHHHccCCCEEEecCchhheeccccCcceeEeCCCCceEEeeccCCceEEEcHHH
Confidence 99999999999999999999999999999999999999999888999999999999998899999999999999999999
Q ss_pred hccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcC-CHHHHHHHHHHHHHhhHhHhhcchhhhhhHhhcCcchh
Q 013271 253 LNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR-DPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHT 331 (446)
Q Consensus 253 l~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~-~~~~l~~~i~~s~~~~~~~v~~d~~~~G~r~~l~~gHt 331 (446)
+.++|++++++|++|++||+++.||.+|++++.+..+.... ..+.+.+++.+++..+.+++..|+++.|+|..+|+|||
T Consensus 156 ~~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~i~~k~~~~~~d~~e~~~r~~l~~GHt 235 (344)
T TIGR01357 156 LKTLPDRELRSGMAEVIKHGLIADAELFDELESNDKLVLRLQELEHLEELIKRSIEVKASIVAEDEKESGLRAILNFGHT 235 (344)
T ss_pred HhhCCHHHHHhHHHHHHHHHhhCCHHHHHHHHhhHHHHhccccHHHHHHHHHHHHHHHHHHhccCCCcccchHHhhcchh
Confidence 99999999999999999999999999999998765444433 36678899999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhHhhcCC
Q 013271 332 FGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADG 411 (446)
Q Consensus 332 i~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~~l~~dkk~~~g 411 (446)
|+||||...++..++||++||+||.+.+++++++|.++++.++++.++++++|+|+.+++.++.+++++.|..|||+++|
T Consensus 236 ~~Hale~~~~~~~~~HG~avaig~~~~~~la~~~~~~~~~~~~~i~~~l~~~g~p~~~~~~~~~~~~~~~l~~dkk~~~~ 315 (344)
T TIGR01357 236 IGHAIEAEAGYGKIPHGEAVAIGMVCEAKLSERLGLLPAELIERLVQLLKRYGLPTDLPKDLDVDELLNAMLNDKKNSGG 315 (344)
T ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHhhhccCC
Confidence 99999998666459999999999999999999999988788999999999999999988668999999999999999999
Q ss_pred ceEEEeecCCCCceeEcCCCCHHHHHHHH
Q 013271 412 LLRLILLKGPLGNCVFTGDYDRKALDDTL 440 (446)
Q Consensus 412 ~~~~vll~~~iG~~~~~~~~~~~~l~~~l 440 (446)
++++++|++ ||+|.+..++++++|.+++
T Consensus 316 ~~~~~l~~~-iG~~~~~~~v~~~~l~~~~ 343 (344)
T TIGR01357 316 KIRFVLLEE-IGKAALASEVPDEMVLELL 343 (344)
T ss_pred cEEEEEecC-CccEEEeCCCCHHHHHHHh
Confidence 999999998 9999999899999999876
No 11
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=100.00 E-value=8.9e-63 Score=501.30 Aligned_cols=341 Identities=33% Similarity=0.524 Sum_probs=313.7
Q ss_pred ceeEEEccCcCCC-hhHhhhc--CCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKH--VQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~--~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.|+|++|+|.+++ ++.+... ...+|++||+|+.+.+.+.+++.+.|++.|+ ++..++++++|++|++++++++++
T Consensus 1 ~y~i~~~~~~~~~~~~~~~~~~~~~~~~~lvVtd~~v~~~~~~~v~~~l~~~g~--~~~~~v~~~~e~~~s~~~v~~~~~ 78 (354)
T cd08199 1 TYEVVLLDGLLDPSNPLLLDVYLEGSGRRFVVVDQNVDKLYGKKLREYFAHHNI--PLTILVLRAGEAAKTMDTVLKIVD 78 (354)
T ss_pred CeeEEEeCCccccchHHHHHhhccCCCeEEEEECccHHHHHHHHHHHHHHhcCC--ceEEEEeCCCCCCCCHHHHHHHHH
Confidence 3899999999999 8888764 2468999999999998899999999998884 566668899999999999999999
Q ss_pred HHHHcCCCCc-ceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEE
Q 013271 170 KAIESRLDRR-CTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLV 248 (446)
Q Consensus 170 ~~~~~~~dr~-~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~vii 248 (446)
.+++.+++|+ |+|||||||+++|+|||+|++|++|+|+|+||||+.|++|+++++|++++....||.++.|++|..||+
T Consensus 79 ~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~rg~p~i~VPTT~lA~vD~~~g~K~~i~~~~~kn~ig~~~~P~~vii 158 (354)
T cd08199 79 ALDAFGISRRREPVLAIGGGVLTDVAGLAASLYRRGTPYVRIPTTLVGLIDAGVGIKTGVNFGGYKNRLGAYHPPTLTLL 158 (354)
T ss_pred HHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCCCEEEEcCccceeeecCCCCceEEeCCCCccccccCCCCCEEEE
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcC-----C---HHHHHHHHHHHHHhhHhHhhcchhhh
Q 013271 249 DTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR-----D---PRAFAYAIKRSCENKAEVVSLDEKES 320 (446)
Q Consensus 249 Dp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~-----~---~~~l~~~i~~s~~~~~~~v~~d~~~~ 320 (446)
||+++.++|++++++|++|++||+++.|+.+|++++++..+.+.. + .+.+.+++.+++..+..++.+|++++
T Consensus 159 D~~~l~tlP~~~~~~G~~e~ik~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~i~~k~~vv~~d~~e~ 238 (354)
T cd08199 159 DRSFLATLPERHIRNGLAEIIKMAVIKDAELFELLEEHGPRLIETRFGGDDGELAAAADEILGRAIQGMLEELGPNLWES 238 (354)
T ss_pred cHHHHhhCCHHHHHhHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 999999999999999999999999999999999998776555432 1 24567788999999999999999999
Q ss_pred hhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 013271 321 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 400 (446)
Q Consensus 321 G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~ 400 (446)
|+|+.+|+|||++|++|....+ .++|||+||+||.+++.++..+|.++.+.++++.++++++|+|+.++. ++.+++++
T Consensus 239 g~r~~ln~GHT~~halE~~~~~-~~~HGeaVa~Gm~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~~~~-~~~~~~~~ 316 (354)
T cd08199 239 DLDRPVDYGHTFSPGLEMRALP-ELLHGEAVAIDMALSAVLAYRRGLISEEERDRILALMRRLGLPVWHPL-LDPDLLWA 316 (354)
T ss_pred CchhhhccccchhHHHHhcCCC-CCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcCCCC-CCHHHHHH
Confidence 9999999999999999987656 799999999999999999999999888999999999999999998753 68999999
Q ss_pred HHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHH
Q 013271 401 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDD 438 (446)
Q Consensus 401 ~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~ 438 (446)
.|..|||+|+|+++||||++ +|++.+..+++++++++
T Consensus 317 ~l~~dkk~~~~~~~~vl~~~-ig~~~~~~~~~~~~~~~ 353 (354)
T cd08199 317 ALKDTVRHRDGLQRAPLPTG-IGECTFLNDVTEEELER 353 (354)
T ss_pred HHHhccCccCCeEEEEEECC-CCCEEEeCCCCHHHHHh
Confidence 99999999999999999998 99999988999998875
No 12
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=100.00 E-value=2.1e-61 Score=496.11 Aligned_cols=351 Identities=34% Similarity=0.501 Sum_probs=315.7
Q ss_pred CceeEEEccCcCCC-hhHhhhc------CCCCEEEEEECCCchhH---HHHHHHHHHhcCCCCee--EEEEEeCCCCCCC
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKH------VQGKKVLVVTNNTVAPL---YLDKVTDALTRGNPNVS--VENVILPDGENYK 159 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~------~~~k~vliVtd~~v~~~---~~~~v~~~L~~~gi~~~--v~~~i~~~ge~~~ 159 (446)
.+|+|+||+|.++. ++.+.+. ..++|++||||+++.++ +.+++.+.|++.++.+. ...+++++||..+
T Consensus 12 ~~y~i~i~~~~~~~~~~~~~~~~~~~~~~~~~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k 91 (389)
T PRK06203 12 FEYPVYFTRDLFSPENPLLAEVLAADGEGKPKKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAK 91 (389)
T ss_pred CceeEEEeCChhhhhHHHHHHhhhhccccCCCeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCC
Confidence 45999999999999 7766542 12489999999999875 46899999988875332 2445678898876
Q ss_pred cH-HHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccc
Q 013271 160 NM-DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIG 238 (446)
Q Consensus 160 t~-~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig 238 (446)
+. ++++++++.+.++++||.|+||||||||++|+||++|++|++++|+|+||||++|++|++++++++++....||+++
T Consensus 92 ~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~~~rgip~I~IPTTlla~vda~~g~~~~v~~~~~kn~~g 171 (389)
T PRK06203 92 NDPALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAATAHRGVRLIRIPTTVLAQNDSGVGVKNGINAFGKKNFLG 171 (389)
T ss_pred CcHHHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHHhcCCCCEEEEcCCCccccCCCccchhheecCCCceeec
Confidence 65 99999999999999999999999999999999999999999999999999999999999999999999878899999
Q ss_pred cccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhh--cc
Q 013271 239 AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVS--LD 316 (446)
Q Consensus 239 ~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~--~d 316 (446)
.|++|..||+||+++.++|++++++|++|+|||+++.|+.+|++++.+...+.+.+.+.+.+++.+++..|.+++. .|
T Consensus 172 ~~~~P~~vi~Dp~~l~tlP~~~~~~G~~e~iK~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~k~~~v~~~~d 251 (389)
T PRK06203 172 TFAPPYAVINDFAFLTTLPDRDWRAGLAEAVKVALIKDAAFFDWLEAHAAALAARDPEAMEELIYRCAELHLEHIAGGGD 251 (389)
T ss_pred cccCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHhhcCHHHHHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999999999999999999998877777667777788999999999999997 99
Q ss_pred hhhhhhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-CC-
Q 013271 317 EKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT-MT- 394 (446)
Q Consensus 317 ~~~~G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~-i~- 394 (446)
+++.|.|+.+|+||||+|++|....| +++||++||+||++.+.++.++|+++++..+|+.++++++|+|+..+.. .+
T Consensus 252 ~~e~g~r~~Ln~gHt~gHAlE~~~~~-~i~HGeAVAiGm~~~~~ls~~~g~~~~~~~~ri~~l~~~lglp~~~~~~~~~e 330 (389)
T PRK06203 252 PFEFGSSRPLDFGHWSAHKLEQLTNY-ALRHGEAVAIGIALDSLYSYLLGLLSEAEAQRILALLRALGFPLYHPALATRD 330 (389)
T ss_pred ccccCCcCccccchhhhhhhhhcCCC-CCCcHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCccccccCccc
Confidence 99999999999999999999997656 7999999999999999999999999999999999999999999987643 22
Q ss_pred --HHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHh
Q 013271 395 --VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 444 (446)
Q Consensus 395 --~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~ 444 (446)
.+++.+.|..+||+++|+++|+||++ +|++.+..++++++++++++++.
T Consensus 331 ~~~~~li~~~~~dkK~~~~~i~~vl~~~-iG~~~~~~~v~~~~l~~~~~~~~ 381 (389)
T PRK06203 331 SKGRELLKGLEEFREHLGGRLTITLLTG-IGRGIEVHEIDLDLLRQAIARLA 381 (389)
T ss_pred chHHHHHHHHHHHhhhcCCeEEEEEEcC-CCcEEEeCCCCHHHHHHHHHHHH
Confidence 35899999999999999999999998 99999988999999999996543
No 13
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=100.00 E-value=1.1e-60 Score=503.33 Aligned_cols=318 Identities=29% Similarity=0.455 Sum_probs=290.0
Q ss_pred CCCceeEEEccCcCCChhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 90 GQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 90 ~~~~~~I~~G~g~~~~~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.+++|+|++|.|.++.. ..+++||||+++.++|.+.+.. ..+++++||++|++++++++++
T Consensus 168 ~~~~~~v~~~~~~~~~~--------~~~~~ii~d~~v~~ly~~~l~~-----------~~~~~~~ge~~k~l~~v~~~~~ 228 (488)
T PRK13951 168 IEKPHLVKIILGGFKRV--------RNEELVFTTERVEKIYGRYLPE-----------NRLLFPDGEEVKTLEHVSRAYY 228 (488)
T ss_pred cCCceeEEEeccccccC--------CCeEEEEECCcHHHHHHHhhcc-----------cEEEecCCCCCCCHHHHHHHHH
Confidence 67889999999988762 1378999999999999886542 2467899999999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEEe
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVD 249 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiD 249 (446)
.+.+++++|+|+|||||||+++|+|||+|++|+||+|||+||||++||+||++|+|++||....||++|.|++|..|++|
T Consensus 229 ~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y~RGi~~i~vPTTlla~vDssiggK~~vn~~~~KNliG~f~~P~~viiD 308 (488)
T PRK13951 229 ELVRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTTLLAQVDASVGGKNAIDFAGVKNVVGTFRMPDYVIID 308 (488)
T ss_pred HHHHcCCCCCCeEEEECChHHHHHHHHHHHHHhcCCCeEecCccHHHHHhcCCCCCeeeeCCCCCceeecCCCCCEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhhhhhHhhcCcc
Q 013271 250 TDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLG 329 (446)
Q Consensus 250 p~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~~G~r~~l~~g 329 (446)
|+++.|||++++++|++|++||+++.|.++|++ .+..++.+.+.+.+.+++.+++..|.+++..|+++.|+|..||+|
T Consensus 309 ~~~l~TLp~~~~~~G~aE~iK~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~si~~k~~vv~~D~~e~~~R~~LN~G 386 (488)
T PRK13951 309 PTVTLSMDEGRFEEGVVEAFKMTILSGRGVELF--DEPEKIEKRNLRVLSEMVKISVEEKARIVMEDPYDMGLRHALNLG 386 (488)
T ss_pred hHHhcCCCHHHHHhhHHHHHHHHHhcChhHHhh--hChhhhhcccHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHhcc
Confidence 999999999999999999999999999999887 344445555667788999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhHhhc
Q 013271 330 HTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVA 409 (446)
Q Consensus 330 Hti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~~l~~dkk~~ 409 (446)
||||||||..+ +++||+|||+||.++++++.++|+++.+..+++.+++++++ |+.++. ++.+++.+.|.+|||++
T Consensus 387 HTigHalE~~~---~i~HG~AVa~gm~~~~~~s~~~g~~~~~~~~~i~~~l~~~~-p~~~~~-~~~~~~~~~~~~dkK~~ 461 (488)
T PRK13951 387 HTLGHVYEMLE---GVPHGIAVAWGIEKETMYLYRKGIVPKETMRWIVEKVKQIV-PIPVPS-VDVEKARNLILNDKKIL 461 (488)
T ss_pred chHHHHHHhcc---CCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CCCCCC-CCHHHHHHHHHHhcCcC
Confidence 99999999873 58999999999999999999999999999999999999985 988765 68899999999999998
Q ss_pred C-CceEEEeecCCCCceeEcCCCCHHH
Q 013271 410 D-GLLRLILLKGPLGNCVFTGDYDRKA 435 (446)
Q Consensus 410 ~-g~~~~vll~~~iG~~~~~~~~~~~~ 435 (446)
+ ++++||+|++ ||++.+. ++++.+
T Consensus 462 ~~~~i~~vl~~~-iG~~~~~-~~~~~~ 486 (488)
T PRK13951 462 KGSRVRLPYVKE-IGKIEFL-EVDPLE 486 (488)
T ss_pred CCCcEEEEEEcC-CCCeeEe-cccccc
Confidence 5 5999999998 9998775 554433
No 14
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=100.00 E-value=1.4e-60 Score=464.07 Aligned_cols=258 Identities=51% Similarity=0.852 Sum_probs=236.0
Q ss_pred EeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEee
Q 013271 151 ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINH 230 (446)
Q Consensus 151 i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~ 230 (446)
++++||++||+++++++++.+.+++++|+|.|||+|||+++|+++|+|++|+||+||+.||||++||+||++|+|++||.
T Consensus 2 ~ip~GE~~Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~RGi~~i~vPTTLLa~vDssiGgK~~vN~ 81 (260)
T PF01761_consen 2 VIPAGEESKSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYMRGIPFIQVPTTLLAQVDSSIGGKTGVNF 81 (260)
T ss_dssp EE-SSGGGSSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEE
T ss_pred CcCCCcccCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHccCCceEeccccHHHHHhcccCCCeeeeC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhc-CCHHHHHHHHHHHHHhh
Q 013271 231 RLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMA-RDPRAFAYAIKRSCENK 309 (446)
Q Consensus 231 ~~~K~~ig~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~-~~~~~l~~~i~~s~~~~ 309 (446)
...||++|.||+|+.|++||+++.|||++++++|++|++|||++.|+++|++++.+..+++. .+.+.+.++|.++++.|
T Consensus 82 ~~~KN~iG~f~~P~~V~iD~~~l~tL~~~e~~~G~aEiiK~a~i~d~~lf~~l~~~~~~~~~~~~~~~l~~~i~~si~~K 161 (260)
T PF01761_consen 82 PGGKNLIGTFYQPEAVLIDPSFLKTLPPREIRSGLAEIIKYALIADPELFELLEDHAKDLLEERDPDALEEIIKRSIKIK 161 (260)
T ss_dssp TTEEEEEEEE---SEEEEEGGGGGGS-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTHCHHHHHHHHHHHHH
T ss_pred CCCCCcccccCCCceeEEcHHHHhhccHHHHHhCHHHHHHHHHHCCHHHHHHHHhhHHHHhcccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998877766 46678899999999999
Q ss_pred HhHhhcchhhhhhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCC
Q 013271 310 AEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAP 389 (446)
Q Consensus 310 ~~~v~~d~~~~G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~ 389 (446)
.++++.|++|.|+|..||||||||||||..+++ .++||+|||+||.++++++.++|+++.+..+++.++++++|+|+.+
T Consensus 162 ~~iv~~D~~E~g~R~~Ln~GHT~gHAlE~~~~~-~i~HGeAVa~Gm~~~a~ls~~~g~~~~~~~~~i~~ll~~~glp~~~ 240 (260)
T PF01761_consen 162 ARIVEQDEFEKGLRRILNFGHTFGHALESLSGY-KISHGEAVAIGMVFAARLSVRLGLLDEDDVERIEELLEKLGLPTSL 240 (260)
T ss_dssp HHHHHHCTTSSSGGGGGGTTHHHHHHHHHHCTT-TS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTTTTTSC
T ss_pred HHHhccCcccccchHHhcccchhHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999877 8999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhHhhc
Q 013271 390 PDTMTVEMFKSIMAVDKKVA 409 (446)
Q Consensus 390 ~~~i~~e~~~~~l~~dkk~~ 409 (446)
+..++.+++.+.|.+|||+|
T Consensus 241 ~~~~~~~~l~~~l~~DKK~r 260 (260)
T PF01761_consen 241 PDIVDPDELIEALKHDKKNR 260 (260)
T ss_dssp CTTS-HHHHHHHHTTCTTS-
T ss_pred CCCCCHHHHHHHHHhCCCCC
Confidence 87679999999999999975
No 15
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=5.3e-50 Score=407.81 Aligned_cols=316 Identities=23% Similarity=0.336 Sum_probs=260.4
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
|++|+||+|++++ ++++++...++|++||+|+++++++.+++.+.|++.+ ++ ..++ .++|++++++++++++
T Consensus 11 p~~i~~G~g~l~~l~~~l~~~~~~~~~livtd~~~~~~~~~~l~~~l~~~~-~~--~~~~----~~~~t~~~v~~~~~~~ 83 (350)
T PRK00843 11 PRDVVVGHGVLDDIGDVCSDLKLTGRALIVTGPTTKKIAGDRVEENLEDAG-DV--EVVI----VDEATMEEVEKVEEKA 83 (350)
T ss_pred CCeEEECCCHHHHHHHHHHHhCCCCeEEEEECCcHHHHHHHHHHHHHHhcC-Ce--eEEe----CCCCCHHHHHHHHHHh
Confidence 6899999999999 9988875324899999999999999999999998876 33 2232 3479999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEEehH
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTD 251 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiDp~ 251 (446)
++.++| +|||||||+++|+||++| |++++|+|+||||+ ++||+++++++++.+ .||..+.++.|..||+||+
T Consensus 84 ~~~~~d---~IIaiGGGsv~D~ak~vA--~~rgip~I~IPTT~--~tds~~s~~a~i~~~-~~~~~~~~~~P~~vivD~~ 155 (350)
T PRK00843 84 KDVNAG---FLIGVGGGKVIDVAKLAA--YRLGIPFISVPTAA--SHDGIASPRASIKGG-GKPVSVKAKPPLAVIADTE 155 (350)
T ss_pred hccCCC---EEEEeCCchHHHHHHHHH--HhcCCCEEEeCCCc--cCCcccCCceEEEeC-CceeeecCCCCeEEEEcHH
Confidence 999988 999999999999999996 78999999999995 479999999999875 4677888899999999999
Q ss_pred hhccCCHHHHHhHHHHHH-HHhhccchhHHHHHHhh-hhHh---hcCCH-HH---HHHHHHHHHHhhHhHhhcchhhhhh
Q 013271 252 TLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQN-MHKL---MARDP-RA---FAYAIKRSCENKAEVVSLDEKESGL 322 (446)
Q Consensus 252 ll~tlP~~~~~sG~~Dal-kha~~~D~~~~~~l~~~-~~~~---~~~~~-~~---l~~~i~~s~~~~~~~v~~d~~~~G~ 322 (446)
++.++|.+++++|++|+| |++++.||.++++++.+ ..+. ++... +. ..+.+.++++.+.+.+..++.++|+
T Consensus 156 ~l~tlP~~~~~sg~~d~l~k~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~i~~~~~~i~~~~~~~~~~v~~~~~~~G~ 235 (350)
T PRK00843 156 IIAKAPYRLLAAGCGDIISNYTAVKDWRLAHRLRGEYYSEYAAALSLMTAKMLIENADIIKPGLEESARLVVKALISSGV 235 (350)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHhHH
Confidence 999999999999999999 88888899888876431 1111 11111 11 1245566677778888889999998
Q ss_pred --------HhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-C
Q 013271 323 --------RATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT-M 393 (446)
Q Consensus 323 --------r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~-i 393 (446)
|..+|+||||+|+||....+ +++|||+||+||++++.++. +..+++.++++++|+|+++++. +
T Consensus 236 ~~~~~g~~r~~l~~gHti~hale~~~~~-~~~HGeaVa~G~~~~~~l~~-------~~~~~i~~ll~~~glP~~l~~l~~ 307 (350)
T PRK00843 236 AMSIAGSSRPASGSEHLFSHALDRLAPG-PALHGEQCGVGTIIMMYLHG-------GDWRKIRDALKKIGAPTTAKELGI 307 (350)
T ss_pred HHhhcCCCCCcchHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHHHHcC-------ccHHHHHHHHHHcCCCCCHHHcCC
Confidence 56689999999999987543 69999999999999987752 3478999999999999998864 7
Q ss_pred CHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHH
Q 013271 394 TVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 441 (446)
Q Consensus 394 ~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~ 441 (446)
+.+++.+.|..|||.|+++++++-.+ .++++.++++++
T Consensus 308 ~~~~~~~~~~~dk~~r~~r~t~l~~~----------~~~~~~~~~~~~ 345 (350)
T PRK00843 308 DDEYIIEALTIAHTIRPERYTILGDR----------GLTREAAEKAAR 345 (350)
T ss_pred CHHHHHHHHHHHhhcCcccEEeecCC----------CCCHHHHHHHHH
Confidence 89999999999999999887664332 556667777665
No 16
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=100.00 E-value=1.5e-47 Score=387.22 Aligned_cols=299 Identities=19% Similarity=0.265 Sum_probs=243.1
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
|++|+||+|++++ ++++++....+|++||||+++.+++.+++.+.|++.++ ++. +...++++||++++++++++.+
T Consensus 1 p~~i~~G~g~l~~l~~~~~~~~~~~kvlivtd~~~~~~~~~~i~~~L~~~~~--~~~-i~~~~~~~~p~~~~v~~~~~~~ 77 (332)
T cd08549 1 PKEIVVGEGAINDIGPIINKIGVNSKIMIVCGNNTYKVAGKEIIERLESNNF--TKE-VLERDSLLIPDEYELGEVLIKL 77 (332)
T ss_pred CcEEEECCChHHHHHHHHHHcCCCCcEEEEECCcHHHHHHHHHHHHHHHcCC--eEE-EEecCCCCCCCHHHHHHHHHHh
Confidence 4789999999999 88887652248999999999999999999999999884 333 2234677899999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCc-cccccccCeEEEeeCCcccccccccCceEEEEeh
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA-QVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDT 250 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A-~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiDp 250 (446)
++ ++| +|||||||+++|+||++| +.+++|+|+||||++. +.+|+++ ++. ..+||..+.++.|..||+||
T Consensus 78 ~~-~~d---~IIaiGGGsv~D~aK~iA--~~~gip~I~VPTT~~~~g~~s~v~---~~~-~~~k~~~~~~~~P~~viiDp 147 (332)
T cd08549 78 DK-DTE---FLLGIGSGTIIDLVKFVS--FKVGKPFISVPTAPSMDGYASSVA---SLI-VNGKKRSVSAVYPEIIVGDI 147 (332)
T ss_pred hc-CCC---EEEEECCcHHHHHHHHHH--HHcCCCEEEeCCCcccCcccCCce---EEe-eCCceEeecCCCCcEEEEcH
Confidence 87 666 999999999999999997 7899999999999732 2334443 332 34677788899999999999
Q ss_pred HhhccCCHHHHHhHHHHHH-HHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhhHhHhhcchhh---------
Q 013271 251 DTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENKAEVVSLDEKE--------- 319 (446)
Q Consensus 251 ~ll~tlP~~~~~sG~~Dal-kha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~~~~v~~d~~~--------- 319 (446)
+++.++|++++++|++|++ ||+.+.||.+++++..+ .++... ..+.+++..++..+.+++..|+.+
T Consensus 148 ~~l~tlP~~~~~ag~~D~l~k~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~l~~a~~ 224 (332)
T cd08549 148 DIISQAPYEFITAGFGDVISNYTALADWYISSVITGE---TYSDDIAAMVKESINKVIDASTGILGRDEKSIKELVEALI 224 (332)
T ss_pred HHHHhCCHHHHHHhHHHHHHhhhHHHHHHHHHHhcCc---ccCHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHH
Confidence 9999999999999999999 77888888877765421 111111 223567777777776666667654
Q ss_pred -hhhHhhcCcc---------hhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCC
Q 013271 320 -SGLRATLNLG---------HTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAP 389 (446)
Q Consensus 320 -~G~r~~l~~g---------Hti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~ 389 (446)
+|++. +|+| |+|+|+||...++ +++||+|||+||+++++++. ...+++.++++++|+|+++
T Consensus 225 ~~G~~~-~n~G~s~~~s~~~Hti~Hale~~~~~-~~~HGeaVaigm~~~~~l~~-------~~~~~i~~ll~~~glp~~~ 295 (332)
T cd08549 225 INGIAM-LIAGNSRPASGAEHHLSHALDMREPE-PHLHGTQVGVTTIIISEIHH-------YTLDDIKKFLSKKGSLNRD 295 (332)
T ss_pred HhhHhh-eecCCCCCcchHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHcCCCCCH
Confidence 78864 5655 9999999998755 78999999999999999985 2589999999999999999
Q ss_pred CCC-CCHHHHHHHHHHhHhhcCCceEEE
Q 013271 390 PDT-MTVEMFKSIMAVDKKVADGLLRLI 416 (446)
Q Consensus 390 ~~~-i~~e~~~~~l~~dkk~~~g~~~~v 416 (446)
++. ++.+++.+.|..|||.|++++++.
T Consensus 296 ~~~~~~~~~~~~~~~~dkk~~~~r~t~l 323 (332)
T cd08549 296 LNLIGVSEVLLYAMLNAHKIIPKRYTIL 323 (332)
T ss_pred HHcCCCHHHHHHHHHHhhhcCCCceeee
Confidence 865 799999999999999999997764
No 17
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=100.00 E-value=4.9e-44 Score=362.41 Aligned_cols=322 Identities=21% Similarity=0.250 Sum_probs=260.1
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.+.+|+||.|++++ .+.+... +.+|+|||||+++.+. +.+++.+.|+..++ ++.+|++.++||++++|+++++
T Consensus 6 ~p~~i~fG~g~l~~l~~~~~~~-g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i----~~~if~~v~p~P~~~~v~~~~~ 80 (377)
T COG1454 6 LPTEILFGRGSLKELGEEVKRL-GAKRALIVTDRGLAKLGLLDKVLDSLDAAGI----EYEVFDEVEPEPTIETVEAGAE 80 (377)
T ss_pred cCceEEecCChHHHHHHHHHhc-CCCceEEEECCccccchhHHHHHHHHHhcCC----eEEEecCCCCCCCHHHHHHHHH
Confidence 36789999999999 8888775 4699999999999888 99999999999984 4577899999999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCC----------------CeEEEEcCCcCccccccccCeEEEeeCCc
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG----------------VSFIQIPTTVMAQVDSSVGGKTGINHRLG 233 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g----------------~p~i~IPTTl~A~tds~v~~k~~i~~~~~ 233 (446)
.++++++| .||||||||+||+||.++..+..+ .|+|+|||| |+|+|++++.++|..+..
T Consensus 81 ~~~~~~~D---~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTT--aGTGSEvT~~aVitd~~~ 155 (377)
T COG1454 81 VAREFGPD---TIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTT--AGTGSEVTPFAVITDEET 155 (377)
T ss_pred HHHhcCCC---EEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCC--CcchhhhcCeEEEEeCCC
Confidence 99999999 999999999999999999876432 899999999 889999999999987644
Q ss_pred --ccccccc-cCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhh
Q 013271 234 --KNLIGAF-YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENK 309 (446)
Q Consensus 234 --K~~ig~~-~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~ 309 (446)
|..+... ..|+.+|+||+++.++|+.+++.+++|+|.||+ |+|++...+..++.++.+. +.+.+.+.+++.+.
T Consensus 156 ~~K~~i~~~~l~Pd~aI~Dp~lt~~~P~~ltA~TGmDALtHAi---EAy~s~~a~p~tD~~A~~ai~li~~~L~~a~~~g 232 (377)
T COG1454 156 GVKYAIADPELLPDVAILDPELTLGMPPSLTAATGMDALTHAI---EAYVSPAANPITDALALEAIKLIFEYLPRAVADG 232 (377)
T ss_pred cceeeccCcccCCCEEEEChHHhcCCChHhhhhhhHHHHHHHH---HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHcCC
Confidence 6655544 589999999999999999999999999999999 8998876666666665443 55667777887765
Q ss_pred HhHhhc-----chhhhhhH---hhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHH------------HHHHHcCCCC
Q 013271 310 AEVVSL-----DEKESGLR---ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAV------------DMSYRLGWID 369 (446)
Q Consensus 310 ~~~v~~-----d~~~~G~r---~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~------------~la~~~g~~~ 369 (446)
.+..++ ....+|+. ..+|+.|.++|.++.. | ++|||.++|+.||... ++++.+|.-.
T Consensus 233 ~d~eARe~m~~aa~lAGmAF~na~lG~~HalaH~lG~~--~-~~pHG~~nAillP~V~~fN~~~a~~r~a~iA~~lg~~~ 309 (377)
T COG1454 233 DDLEAREKMHLAATLAGMAFANAGLGLVHALAHPLGAL--F-HIPHGLANAILLPYVIRFNAEAAPERYARIARALGLPG 309 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHhcchhHHHHHHhhcccccc--c-cCchHHHhhHhhHHHHHHhhhhhHHHHHHHHHHhCCCC
Confidence 444332 34566765 2467789999999986 4 8999999999999775 4566677531
Q ss_pred -----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 370 -----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 370 -----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
+..++.+.++.+++|+|.++++. ++++++.+.....-+ .. .. .+++ ..++++++++.+++
T Consensus 310 ~~~~~~~~i~~i~~L~~~lgip~~L~d~Gv~~~~i~~~a~~A~~-d~-----~~----~~NP---r~~t~ed~~~i~~~ 375 (377)
T COG1454 310 EGDAADALIDALRELLERLGIPKRLRDLGVKEEDIDKLAEDALA-DP-----CT----ATNP---RPPTREDIKEIYEA 375 (377)
T ss_pred ccchHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHHHh-Cc-----cc----CCCC---CCCCHHHHHHHHHH
Confidence 35789999999999999999985 888887665555443 11 01 1112 47888999988865
No 18
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=100.00 E-value=2.1e-43 Score=356.79 Aligned_cols=293 Identities=25% Similarity=0.349 Sum_probs=222.4
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
|++|+||+|++++ +++++.. +.+|++||||+.+.+.+.+++.+.|++. ++ + .+|...+++|++++|+++++.+
T Consensus 1 p~~i~~G~g~l~~l~~~~~~~-g~~~~liv~~~~~~~~~~~~v~~~l~~~-~~--~--~~~~~~~~~p~~~~v~~~~~~~ 74 (332)
T cd07766 1 PTRIVFGEGAIEKIGEEIKRG-GFDRALVVSDEGVVKGVGEKVADSLKKL-IA--V--HIFDGVGPNPTFEEVKEAVERA 74 (332)
T ss_pred CCeEEECcCHHHHHHHHHHhc-CCCeEEEEeCCchhhhHHHHHHHHHHhc-Cc--E--EEeCCcCCCcCHHHHHHHHHHH
Confidence 4789999999999 8888775 4689999999999888899999999876 42 2 3455566679999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeC-Cccccccccc--CceEEEE
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHR-LGKNLIGAFY--QPQCVLV 248 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~-~~K~~ig~~~--~P~~vii 248 (446)
++.++| +||||||||++|+||++|..+.+++|+|+|||| +++||+++++++++.+ +.| .+.++ .|+.+|+
T Consensus 75 ~~~~~d---~IIaiGGGs~~D~aK~ia~~~~~~~p~i~iPTt--~~tgse~t~~avi~~~~~~K--~~~~~~~~P~~vi~ 147 (332)
T cd07766 75 RAAEVD---AVIAVGGGSTLDTAKAVAALLNRGLPIIIVPTT--AATGSEVSPKAVITDKEGGK--TGFFYPDNPDVVFV 147 (332)
T ss_pred HhcCcC---EEEEeCCchHHHHHHHHHHHhcCCCCEEEEeCC--CchhhccCCeEEEEeCCCce--EEeccCCccCEEEE
Confidence 998888 999999999999999999999899999999999 5678999999999987 444 33344 8999999
Q ss_pred ehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHH-h---hHhHhhcchhhhhhH
Q 013271 249 DTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCE-N---KAEVVSLDEKESGLR 323 (446)
Q Consensus 249 Dp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~-~---~~~~v~~d~~~~G~r 323 (446)
||+++.++|++++++|++|+|+|++ |.++........+.++... +.+.+.+.+.+. . ..+.+......+|+.
T Consensus 148 Dp~l~~t~P~~~~~~g~~Dal~h~~---E~~~~~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~ar~~l~~as~~ag~~ 224 (332)
T cd07766 148 DTDITKGLPPRQVASGGVDALSHAL---EAYSTKKSWPIADALAEKALETIEEDLPKAIEPGDYDALEKVVWAATLAGNG 224 (332)
T ss_pred ChhhhhCCCHHHHHHHHHHHHHHHH---HHHHCCCCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 5554322111222221110 122222222221 0 000111122233332
Q ss_pred ------hhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-CCHH
Q 013271 324 ------ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT-MTVE 396 (446)
Q Consensus 324 ------~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~-i~~e 396 (446)
..+|++|+++|+|+.. + +++||++||++++.++++....+...++.++++.+|++++|+|+++++. ++.+
T Consensus 225 ~~~~~~~~~~~~H~i~h~l~~~--~-~i~HG~ava~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~lglP~~l~e~g~~~~ 301 (332)
T cd07766 225 LFAAKSGGLGAAHAIGHALTAL--E-GIPHGEAVAVGLPAVLKVANDMNPEIEHAIEAVFKFLEDLGAPTDLADLGVSKE 301 (332)
T ss_pred HcCCCcccchHhHHhhCHHhhC--c-CCChHHHHHHHHHHHHHHhhhcCHhHHHHHHHHHHHHHHCCCCCCHHHcCCCHH
Confidence 4578889999999987 4 7999999999999999988765433345789999999999999999875 7777
Q ss_pred HHHHHHHH
Q 013271 397 MFKSIMAV 404 (446)
Q Consensus 397 ~~~~~l~~ 404 (446)
++.+....
T Consensus 302 ~~~~~~~~ 309 (332)
T cd07766 302 DIDKLAEK 309 (332)
T ss_pred HHHHHHHH
Confidence 76554443
No 19
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=100.00 E-value=5.5e-43 Score=354.97 Aligned_cols=316 Identities=25% Similarity=0.360 Sum_probs=241.0
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
|++|+||+|++++ ++++++..+.+|++||+|+++++.+.+++.+.|++.+ .+ ..++ .++|+.++++++++.+
T Consensus 2 p~~i~~g~g~l~~l~~~l~~~~~~~~~liv~d~~~~~~~~~~v~~~l~~~~-~~--~~~~----~~~~~~~~v~~~~~~~ 74 (339)
T cd08173 2 PRDVVVGHGVLEKIPNVLRDLLLGGRVLVVTGPTTKSIAGKKVEALLEDEG-EV--DVVI----VEDATYEEVEKVESSA 74 (339)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCCeEEEEECCchHHHHHHHHHHHHHhcC-Ce--EEEE----eCCCCHHHHHHHHHHh
Confidence 5789999999999 8888753245899999999999889999999999887 43 2232 2467999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEEehH
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTD 251 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiDp~ 251 (446)
+++++| +|||||||+++|+||++| +.+++|+|+|||| +++||+++..+++..+ .|+..+.++.|.+||+||+
T Consensus 75 ~~~~~d---~iIaiGGGs~~D~aK~~a--~~~~~p~i~iPTT--~~t~s~~s~~a~i~~~-~~k~~~~~~~P~~vi~Dp~ 146 (339)
T cd08173 75 RDIGAD---FVIGVGGGRVIDVAKVAA--YKLGIPFISVPTA--ASHDGIASPRASIKGN-GKPISIKAKPPLAVIADTG 146 (339)
T ss_pred hhcCCC---EEEEeCCchHHHHHHHHH--HhcCCCEEEecCc--ccCCcccCCceEEEeC-CceEEecCCCCeEEEEcHH
Confidence 999888 999999999999999996 6789999999999 5689999999888765 4566777889999999999
Q ss_pred hhccCCHHHHHhHHHHHH-HHhhccchhHHHHHHhh-hhHhhcCCHHHHHHHHHHHHHh-h------HhHhhcchhhhhh
Q 013271 252 TLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQN-MHKLMARDPRAFAYAIKRSCEN-K------AEVVSLDEKESGL 322 (446)
Q Consensus 252 ll~tlP~~~~~sG~~Dal-kha~~~D~~~~~~l~~~-~~~~~~~~~~~l~~~i~~s~~~-~------~~~v~~d~~~~G~ 322 (446)
++.++|++++++|++|++ |+....||.+++.++.. ..+..........+.+.+.+.. + .+.+.....++|+
T Consensus 147 l~~tlP~~~~~sg~~Dal~k~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~~~~~~r~l~~a~~~~G~ 226 (339)
T cd08173 147 IIAKAPRRLLAAGCGDIISNYTAVRDWRLAHRLKGEYYSEYAASLALMSAKMVIKNADEIKPGLEESVRVVVKALISSGV 226 (339)
T ss_pred HHHhCCHHHHHHhHHHHHhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHhhH
Confidence 999999999999999999 77777888887765431 1111000011111111111110 0 1122223344555
Q ss_pred Hh--------hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-C
Q 013271 323 RA--------TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT-M 393 (446)
Q Consensus 323 r~--------~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~-i 393 (446)
.. .+++||+++|+||.... .+++||++||+|++++..++. ..++++.++++++|+|+++++. +
T Consensus 227 ~~~~~g~~~~~~g~~H~~~hal~~~~~-~~~~HG~~Va~g~~v~~~l~~-------~~~~~i~~l~~~lglp~~l~~lgi 298 (339)
T cd08173 227 AMSIAGSSRPASGSEHLFSHALDRLAP-GKALHGEQCGVGTIIMMYLHG-------GNWRRIRDALKKVGAPTTAKELGI 298 (339)
T ss_pred HHhhcCCCCCCchHHHHHHHHHHHhCC-CCCccHhHHHHHHHHHHHHcC-------ccHHHHHHHHHHCCCCCCHHHcCC
Confidence 32 25678999999998753 379999999999988776642 3578999999999999999875 8
Q ss_pred CHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHH
Q 013271 394 TVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 441 (446)
Q Consensus 394 ~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~ 441 (446)
+.+++.+.+..++|.++++... .. | .+++++++++.++
T Consensus 299 ~~~~~~~~~~~~~k~~~~~~~~--~~-p-------~~~~~~~~~~~~~ 336 (339)
T cd08173 299 DDEIVIEALTIAHKIRPERYTI--LG-E-------VGLTREAAEKAAE 336 (339)
T ss_pred CHHHHHHHHHHHHhcCCcceEe--ec-C-------CCCCHHHHHHHHH
Confidence 9999999999999987665332 22 2 3778888888775
No 20
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=100.00 E-value=8.7e-43 Score=352.41 Aligned_cols=309 Identities=19% Similarity=0.210 Sum_probs=224.8
Q ss_pred ceeEEEccCcCCC-hhHhhh-cCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQK-HVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~-~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
|++|+||+|++++ ++++++ ..+++|++||||+++ .+++.+.|++.++ . .+..+. .|+.++++++.+.
T Consensus 1 ~~~i~~G~g~l~~l~~~l~~~~~~~~r~livtd~~~----~~~~~~~L~~~~~-~--~~~~~~----~~~~~~~~~i~~~ 69 (331)
T cd08174 1 PLVLDIGEGAIARLGELLSDRNPNFGRVAVVSGPGV----GEQVAESLKTSFS-A--EVEAVE----EVSNSDAEEIGAR 69 (331)
T ss_pred CcEEEECcCHHHHHHHHHHHHHhcCCceEEEECCcH----HHHHHHHHHhccC-c--eEEEec----CCCccCHHHHHHH
Confidence 5789999999999 888873 113689999999987 5567777777663 1 223333 2444555666666
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEEeh
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDT 250 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiDp 250 (446)
+++.+ |.|+|||||||+++|+||++|+ ++++|+|+|||| +++|+++++.++++.+.+|+..+.+ .|+.||+||
T Consensus 70 ~~~~~--~~d~iIaiGGGsv~D~aK~vA~--~~~~p~i~vPTt--~~tgs~~s~~a~i~~~~~k~~~~~~-~P~~vi~D~ 142 (331)
T cd08174 70 ARSIP--NVDAVVGIGGGKVIDVAKYAAF--LRGIPLSVPTTN--LNDDGIASPVAVLTDEGGKRSSLAA-IPIGVVIDL 142 (331)
T ss_pred HHhcc--CCCEEEEeCCcHHHHHHHHHHh--hcCCCEEEecCc--cccCccccCceEEEeCCCeeeecCC-CCcEEEEcH
Confidence 66665 4459999999999999999976 789999999999 4678999999999988888888877 999999999
Q ss_pred HhhccCCHHHHHhHHHHHHHHh-hccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhh-H--------hHhhcchhhh
Q 013271 251 DTLNTLPDRELASGLAEVIKYG-LIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENK-A--------EVVSLDEKES 320 (446)
Q Consensus 251 ~ll~tlP~~~~~sG~~Dalkha-~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~-~--------~~v~~d~~~~ 320 (446)
+++.++|++++++|++|+|.|+ .+.||+++.+.... ..+...+.+.+...+.+... . +.+......+
T Consensus 143 ~~l~tlP~~~~~aG~~Dalak~~~~~d~~~~~~~~~~---~~~~~~~~~a~~~~~~l~~~~~~~~d~~~~~~l~~a~~la 219 (331)
T cd08174 143 DVIRSAPRRLILAGIGDLISNITALADWELAHERGGE---PVDGLAALLSRAAAEAVLRHPGSITDPEFLKTLAEGLVLS 219 (331)
T ss_pred HHHHhCCHHHHHhhHHHHHHhcchHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999554 44566654432110 00000111221111111110 0 1111122234
Q ss_pred hhHh--------hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC
Q 013271 321 GLRA--------TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT 392 (446)
Q Consensus 321 G~r~--------~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~ 392 (446)
|+.. .+|++|+|+|+|+....+ +++||++||+|+++++.+..+ ..+++.++++++|+|+++++.
T Consensus 220 G~a~~~~g~~~~~~~~~H~i~h~l~~~~~~-~~~HG~~Va~g~~~~~~l~~~-------~~~~i~~~l~~~glp~~~~~~ 291 (331)
T cd08174 220 GIAMEIAGNSRPASGAEHLISHALDKLAPG-PALHGEQVGLATYFMSHLRGH-------HTERIQKLLTLTGFFLYVKEL 291 (331)
T ss_pred HHHHhccCCCCCCcHHHHHHHHHHHhcCCC-ccccHHHHHHHHHHHHHHcCC-------cHHHHHHHHHHcCCCCCHHHc
Confidence 4432 136789999999987543 699999999999999888642 367999999999999998774
Q ss_pred -CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHH
Q 013271 393 -MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 440 (446)
Q Consensus 393 -i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l 440 (446)
++.+++.+.|..|||.+++ |+++|++ ..+++++..+++
T Consensus 292 g~~~~~~~~~~~~~~k~~~~--~~~~l~~--------~~~~~~~~~~~~ 330 (331)
T cd08174 292 GLDKEEFLEAVQLAPSTRPG--RYTILEH--------LGLSADELRDAY 330 (331)
T ss_pred CCCHHHHHHHHHhccccCCC--ceEeeCC--------CCCCHHHHHHhh
Confidence 8999999999999999887 5777776 378888887765
No 21
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=100.00 E-value=1.8e-42 Score=352.36 Aligned_cols=304 Identities=24% Similarity=0.381 Sum_probs=236.3
Q ss_pred eEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHH
Q 013271 95 PIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 173 (446)
Q Consensus 95 ~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~ 173 (446)
+|+||+|++++ +++++++ +.+|++||||+.+.+.+.+++.+.|++.++ ++.++.+..+|++|++++++++++.+++
T Consensus 3 ~i~~G~g~l~~l~~~~~~~-~~~~~livtd~~~~~~~~~~v~~~l~~~~i--~~~~~~~~~~~~~pt~~~v~~~~~~~~~ 79 (348)
T cd08175 3 EIVIGEGALERLPEILKEF-GYKKALIVADENTYAAAGKKVEALLKRAGV--VVLLIVLPAGDLIADEKAVGRVLKELER 79 (348)
T ss_pred EEEECCCHHHHHHHHHHhc-CCCcEEEEECCcHHHHHHHHHHHHHHHCCC--eeEEeecCCCcccCCHHHHHHHHHHhhc
Confidence 58999999999 9888875 468999999999998888999999999985 4555666777878999999999999987
Q ss_pred cCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEEehHhh
Q 013271 174 SRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTL 253 (446)
Q Consensus 174 ~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiDp~ll 253 (446)
++| +||||||||++|+||++| +.+++|+|+|||| ++++++++...++..++.|..+ .++.|+.+|+||+++
T Consensus 80 -~~d---~IIaIGGGs~~D~aK~vA--~~~~~p~i~IPTT--agt~g~~~~~~~v~~~g~K~~~-~~~~P~~viiDp~l~ 150 (348)
T cd08175 80 -DTD---LIIAVGSGTINDITKYVS--YKTGIPYISVPTA--PSMDGYTSSGAPIILNGFKKTY-QAVAPIAIFADTDIL 150 (348)
T ss_pred -cCC---EEEEECCcHHHHHHHHHH--HhcCCCEEEecCc--ccccCccCCCceEecCCccccc-cCCCCeEEEEChHHH
Confidence 777 999999999999999996 5789999999999 6778887766666554556555 357999999999999
Q ss_pred ccCCHHHHHhHHHHHH-HHhhccchhHHHHHHhhhhHhhcCC-HHHHHHHHHHHHHhhHhHhhcchhh----------hh
Q 013271 254 NTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCENKAEVVSLDEKE----------SG 321 (446)
Q Consensus 254 ~tlP~~~~~sG~~Dal-kha~~~D~~~~~~l~~~~~~~~~~~-~~~l~~~i~~s~~~~~~~v~~d~~~----------~G 321 (446)
.++|++++++|++|+| ++....++.+.+.+.. +.++.. .+.+.+.+.++++++.++..+|+.. +|
T Consensus 151 ~slP~~~~~sg~~Dale~~~~~~~~~~~~~~~~---~~~~~~a~~~i~~~l~~~~~~~~~~~~~d~~ar~~l~~a~~laG 227 (348)
T cd08175 151 ANAPQRMIAAGFGDLLGKYTALADWKIAHILTG---EYYCETVWDLVEEALEKCLESADGLAARDEEAIKQLMEALILSG 227 (348)
T ss_pred HhCCHHHHHhhHHHHHHhcccHHhHHHHHHhcC---CcCcHHHHHHHHHHHHHHHhhHHhhhcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999 5544444444443211 011111 2345677888888777765555432 23
Q ss_pred hHh--------hcCcchhhhhhhhhccC---CCCCCcHHhhhhhHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcC
Q 013271 322 LRA--------TLNLGHTFGHAIETGFG---YGQWLHGEAVAAGMVMAVDMSYRLGWI------DDSIVKRVHNILQQAK 384 (446)
Q Consensus 322 ~r~--------~l~~gHti~Hale~~~~---~~~i~HGeaVAig~~~~~~la~~~g~~------~~~~~~~i~~ll~~lG 384 (446)
+.. .++++|+++|+++...+ +.+++||++||++|+.++++..+.+.. ..+.++++.+|++++|
T Consensus 228 ~a~~~~g~s~~~~g~~Hal~h~l~~~~~~~~~~~~~HG~avai~lp~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~lg 307 (348)
T cd08175 228 LAMQLVGSSRPASGAEHHLSHYWEMEFLNRGKKPLLHGEKVGVGTLIVAALYERLLKKDLEGLDKLKASAKIEELLKKVG 307 (348)
T ss_pred HHHHhcCCCCCCccHHHHHHHHHHHhcccccCCcccchhHHHHHHHHHHHHHHHHHhccchhhcccccHHHHHHHHHHCC
Confidence 221 13567999999986432 337999999999999999887654321 2346899999999999
Q ss_pred CCCCCCCC-CCHHHHHHHHHHhHhhcCCceE
Q 013271 385 LPTAPPDT-MTVEMFKSIMAVDKKVADGLLR 414 (446)
Q Consensus 385 lP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~ 414 (446)
+|+++++. ++.+++.+.+..++|+| ++++
T Consensus 308 lP~~l~~~gv~~~~l~~~~~~a~~~~-~~~~ 337 (348)
T cd08175 308 APTHPEEIGIDKELFRKSLILAKEIR-DRYT 337 (348)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHHHhh-hhhh
Confidence 99998875 89999999999999988 4543
No 22
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-41 Score=345.35 Aligned_cols=322 Identities=17% Similarity=0.164 Sum_probs=240.9
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.|.+|+||+|++++ +++++++ +.+|++||||+.+.+. +.+++.+.|++.|+ .+.+|.+.++||++++|+++++
T Consensus 8 ~p~~i~~G~g~~~~l~~~~~~~-g~~~~livt~~~~~~~g~~~~v~~~L~~~~i----~~~~f~~v~~np~~~~v~~~~~ 82 (383)
T PRK09860 8 IPSVNVIGADSLTDAMNMMADY-GFTRTLIVTDNMLTKLGMAGDVQKALEERNI----FSVIYDGTQPNPTTENVAAGLK 82 (383)
T ss_pred cCCeEEECcCHHHHHHHHHHhc-CCCEEEEEcCcchhhCccHHHHHHHHHHcCC----eEEEeCCCCCCcCHHHHHHHHH
Confidence 46889999999999 9999886 4599999999988776 78899999999884 3467888999999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhh----------------cCCCeEEEEcCCcCccccccccCeEEEeeCCc
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHRLG 233 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~----------------~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~ 233 (446)
.++++++| +||||||||++|+||++|..+ ...+|+|+|||| ++|||+++..++++.+..
T Consensus 83 ~~~~~~~D---~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTT--agTGSE~t~~avi~~~~~ 157 (383)
T PRK09860 83 LLKENNCD---SVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTT--AGTASEMTRFCIITDEAR 157 (383)
T ss_pred HHHHcCCC---EEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCC--CcchhccCceEEEEecCC
Confidence 99999999 999999999999999998632 246899999999 789999999999976543
Q ss_pred --cccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhh
Q 013271 234 --KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENK 309 (446)
Q Consensus 234 --K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~ 309 (446)
|..+ .....|+.+|+||+++.++|++++++|++|+|.|++ |.|++.......+.++... +.+.+.+.+++.+.
T Consensus 158 ~~K~~~~~~~~~P~~ai~Dp~l~~s~P~~~ta~tg~DAL~Hai---E~y~s~~~~p~sd~~a~~ai~~i~~~l~~a~~~~ 234 (383)
T PRK09860 158 HIKMAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAI---EAYVSIAATPITDACALKAVTMIAENLPLAVEDG 234 (383)
T ss_pred CceEEEECcCcccCEEEECcHhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4434 344599999999999999999999999999999999 8888754333344433221 23344555555543
Q ss_pred HhHhhc-----chhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH------------HHHHcCCC-
Q 013271 310 AEVVSL-----DEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGWI- 368 (446)
Q Consensus 310 ~~~v~~-----d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~------------la~~~g~~- 368 (446)
.+...+ ....+|+.. .+|..|.++|+|+.. | +++||.++|+.++..++ +++.+|..
T Consensus 235 ~d~~aR~~m~~as~laG~a~~~~g~g~~Hal~h~lg~~--~-~ipHG~~~ai~lP~vl~~n~~~~~~k~~~~a~~~g~~~ 311 (383)
T PRK09860 235 SNAKAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGF--Y-NLPHGVCNAVLLPHVQVFNSKVAAARLRDCAAAMGVNV 311 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHHccccHHHHHHHhhHHhhC--c-CCCcHHHHHHHHHHHHHHhhccCHHHHHHHHHHhCCCC
Confidence 333222 233455542 234457777777764 4 89999999998886653 34445542
Q ss_pred ---C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHH
Q 013271 369 ---D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDT 439 (446)
Q Consensus 369 ---~-----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~ 439 (446)
. .+.++++.+|++++|+|+++.+. ++++++.+......+. ... .+++ ..++++++.+.
T Consensus 312 ~~~~~~~~a~~~i~~i~~l~~~lglP~~L~e~gv~~~~~~~ia~~a~~~--~~~--------~~np---~~~t~~~i~~i 378 (383)
T PRK09860 312 TGKNDAEGAEACINAIRELAKKVDIPAGLRDLNVKEEDFAVLATNALKD--ACG--------FTNP---IQATHEEIVAI 378 (383)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhC--ccc--------CCCC---CCCCHHHHHHH
Confidence 1 24678899999999999999876 8888876554433221 110 1111 47788999888
Q ss_pred HHH
Q 013271 440 LYA 442 (446)
Q Consensus 440 l~~ 442 (446)
|++
T Consensus 379 l~~ 381 (383)
T PRK09860 379 YRA 381 (383)
T ss_pred HHH
Confidence 865
No 23
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=100.00 E-value=1.4e-40 Score=344.14 Aligned_cols=288 Identities=23% Similarity=0.302 Sum_probs=222.8
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
|.+|+||+|++++ +..+. +.+|++||||+.+.+. +.+++.+.|++.|+ .+.+|+++++||++++|+++++.
T Consensus 1 p~~I~fG~g~~~~l~~~~~---~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi----~~~~f~~v~~~p~~~~v~~~~~~ 73 (398)
T cd08178 1 PPKIYFERGSLPYALLDLK---GKKRAFIVTDRFMVKLGYVDKVIDVLKRRGV----ETEVFSDVEPDPSLETVRKGLEL 73 (398)
T ss_pred CCeEEECcCHHHHHHHHhc---CCCeEEEEcChhHHhCccHHHHHHHHHHCCC----eEEEecCCCCCcCHHHHHHHHHH
Confidence 4689999999999 74333 3589999999998887 99999999999884 34578899999999999999999
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhh--------------c-------------CCCeEEEEcCCcCcccccccc
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------L-------------RGVSFIQIPTTVMAQVDSSVG 223 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~--------------~-------------~g~p~i~IPTTl~A~tds~v~ 223 (446)
++++++| +||||||||++|+||++|..+ . +++|+|+|||| ++|||+++
T Consensus 74 ~~~~~~D---~IIaiGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPTT--agTGSE~t 148 (398)
T cd08178 74 MNSFKPD---TIIALGGGSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTT--SGTGSEVT 148 (398)
T ss_pred HHhcCCC---EEEEeCCccHHHHHHHHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCCC--Cccccccc
Confidence 9999999 999999999999999998631 1 56899999999 68999999
Q ss_pred CeEEEeeCC--ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHH
Q 013271 224 GKTGINHRL--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFA 299 (446)
Q Consensus 224 ~k~~i~~~~--~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~ 299 (446)
..++++... .|..+ +.+..|+.+|+||+++.++|++++++|++|+|+|++ |.|++.......+.++... +.+.
T Consensus 149 ~~avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~tlP~~~~aatg~Dal~hai---E~~~s~~~~~~sd~~a~~a~~~i~ 225 (398)
T cd08178 149 PFAVITDEKTGVKYPLADYALTPDMAIVDPELVMTMPKSLTADTGIDALTHAL---EAYVSVMASDFTDGLALQAIKLIF 225 (398)
T ss_pred CeEEEEecCCCeeEEeeCccccCCEEEECcHhhcCCCHHHHHHHHHHHHHHHH---HHhhcCCCCHHHHHHHHHHHHHHH
Confidence 999987653 24433 456799999999999999999999999999999999 7787654444444443322 3445
Q ss_pred HHHHHHHHhhHhHhh-----cchhhhhhH---hhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHH--------
Q 013271 300 YAIKRSCENKAEVVS-----LDEKESGLR---ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSY-------- 363 (446)
Q Consensus 300 ~~i~~s~~~~~~~v~-----~d~~~~G~r---~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~-------- 363 (446)
+.+.+++.++.+.-. .....+|+. ..+|++|+++|+++.. | +++||+++|++++.++++..
T Consensus 226 ~~l~~a~~~~~d~~ar~~~~~as~laG~a~~~~~lg~~Hal~h~l~~~--~-~i~HG~a~ai~lp~vl~~~~~~~~~~~~ 302 (398)
T cd08178 226 EYLPRSYKNGADPEAREKMHNAATIAGMAFANAFLGICHSMAHKLGAE--F-HIPHGLANAILLPHVIRYNATDPPVKQA 302 (398)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhhccC--C-CCChHHHHHHHHHHHHHhhccccccccc
Confidence 556666655432221 123345652 3567889999999986 4 79999999999998776542
Q ss_pred -------------------HcCCC--C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHH
Q 013271 364 -------------------RLGWI--D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMF 398 (446)
Q Consensus 364 -------------------~~g~~--~-----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~ 398 (446)
.+|.- + ++.++++.++++++|+|+++.+. ++++++
T Consensus 303 ~~~~~~~~~~~~~~~~la~~lg~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~~~gv~~~~~ 364 (398)
T cd08178 303 AFPQYKYPKAKERYAEIARFLGLPGKTDEEKVESLIKAIEELKKKLGIPKSIKDAGVDEEDF 364 (398)
T ss_pred ccccccccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 22321 1 23477889999999999988875 777765
No 24
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=100.00 E-value=2.1e-40 Score=339.53 Aligned_cols=317 Identities=23% Similarity=0.262 Sum_probs=233.1
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
|.+|+||+|++++ ++++.+. +.+|++||||+++. +.+.+.+.|++.++ .+.+|.++++||++++|+++.+.+
T Consensus 1 P~~i~~G~g~l~~l~~~~~~~-g~~~~livtd~~~~--~~~~~~~~l~~~~~----~~~~~~~~~~~p~~~~v~~~~~~~ 73 (367)
T cd08182 1 PVRIIFGRGAIAKLPSLLKGL-GGKRVLLVTGPRSA--IASGLTDILKPLGT----LVVVFDDVQPNPDLEDLAAGIRLL 73 (367)
T ss_pred CCeEEECcCHHHHHHHHHHhc-CCCeEEEEeCchHH--HHHHHHHHHHHcCC----eEEEEcCcCCCcCHHHHHHHHHHH
Confidence 4688999999999 8888875 45899999999987 67888888988873 456788999999999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhh--------------------cCCCeEEEEcCCcCccccccccCeEEEeeC
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHR 231 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~--------------------~~g~p~i~IPTTl~A~tds~v~~k~~i~~~ 231 (446)
+++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||+++..+++..+
T Consensus 74 ~~~~~D---~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt--agtgse~t~~avi~~~ 148 (367)
T cd08182 74 REFGPD---AVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTT--AGTGSEVTPFATVWDG 148 (367)
T ss_pred HhcCcC---EEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCC--CCchhhhCCEEEEEEC
Confidence 999999 999999999999999998752 367999999999 7899999999998765
Q ss_pred --Cccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHH
Q 013271 232 --LGKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCE 307 (446)
Q Consensus 232 --~~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~ 307 (446)
+.|..+ +.+..|+.+|+||+++.++|++++++|++|+|.|++ |.|+........+.++... +.+.+.+.++++
T Consensus 149 ~~~~K~~~~~~~~~P~~~i~Dp~l~~t~P~~~~a~~~~Dal~h~~---E~~~s~~~~~~td~~a~~a~~~i~~~l~~a~~ 225 (367)
T cd08182 149 KKGIKYSLAGPALYPDTAIVDPELTLSLPPYQTASTGLDALAHAI---ESYWSKNSTPESRAYARRAIRLILENLPPLLD 225 (367)
T ss_pred CCCeeeeecCCcccCCEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334433 456799999999999999999999999999999999 7777643333333332211 222333334433
Q ss_pred hhHhH-----hhcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHH--------------HHHc
Q 013271 308 NKAEV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM--------------SYRL 365 (446)
Q Consensus 308 ~~~~~-----v~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~l--------------a~~~ 365 (446)
+..+. +......+|+.. .++.+|.++|+|+.. + +++||++||++++..+++ ++.+
T Consensus 226 ~~~~~~ar~~l~~as~laG~a~~~~~~g~~H~l~h~l~~~--~-~i~HG~~~a~~lp~v~~~~~~~~~~~~~~~~i~~~~ 302 (367)
T cd08182 226 EPGNLEARAKMAEASLLAGLAISNTRTTAAHAISYPLTSR--Y-GVPHGLACALTLPALLRINLEALPEDLALEAILAAF 302 (367)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHHhchhhcC--C-CCChHHHHHHHHHHHHHHhhhhChHhhhhHHHHHHh
Confidence 32111 112233456542 234458888888765 4 799999999999876543 3333
Q ss_pred CCC-CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHH
Q 013271 366 GWI-DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 440 (446)
Q Consensus 366 g~~-~~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l 440 (446)
|.- .++.++++.+|++++|+|+++.+. ++.+++.+......+ ++.+. +. -..++++++++.+
T Consensus 303 ~~~~~~~~~~~i~~l~~~~glp~~L~e~gv~~~~~~~~a~~a~~--~~~~~--------~~---p~~~t~e~i~~i~ 366 (367)
T cd08182 303 GAPSAAEAAARIEALLKELGLPTRLAEYIVTREDIARLVAEAFT--PERLD--------NN---PVDLDEADLERLL 366 (367)
T ss_pred CcccHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHh--ccccc--------CC---CCCCCHHHHHHHh
Confidence 321 135689999999999999999875 888887665443322 11110 11 1467888888775
No 25
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=100.00 E-value=2.5e-40 Score=341.60 Aligned_cols=323 Identities=15% Similarity=0.151 Sum_probs=241.1
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.|.+|+||+|++++ ++++++. +.++++||+|+.+.+. +.+++.+.|++.|+ ++.+|++.++||+.++|+++++
T Consensus 26 ~P~~i~fG~g~~~~l~~~~~~~-g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi----~~~~~~~v~~~P~~~~v~~~~~ 100 (395)
T PRK15454 26 VPPVTLCGPGAVSSCGQQAQTR-GLKHLFVMADSFLHQAGMTAGLTRSLAVKGI----AMTLWPCPVGEPCITDVCAAVA 100 (395)
T ss_pred cCCeEEECcCHHHHHHHHHHhc-CCCEEEEEcCcchhhCccHHHHHHHHHHcCC----eEEEECCCCCCcCHHHHHHHHH
Confidence 46889999999999 9998875 3589999999988776 78999999999984 3456788899999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhhc----------------CCCeEEEEcCCcCccccccccCeEEEeeCC-
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGGKTGINHRL- 232 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~----------------~g~p~i~IPTTl~A~tds~v~~k~~i~~~~- 232 (446)
.++++++| +||||||||++|+||++|..+. ..+|+|+|||| ++|||+++..+++..+.
T Consensus 101 ~~r~~~~D---~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTt--aGTGSE~t~~avi~~~~~ 175 (395)
T PRK15454 101 QLRESGCD---GVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTT--AGTGSETTNVTVIIDAVS 175 (395)
T ss_pred HHHhcCcC---EEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCC--CcchhhhCCeEEEEcCCC
Confidence 99999999 9999999999999999987531 35799999999 78999999999987653
Q ss_pred -ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhh
Q 013271 233 -GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENK 309 (446)
Q Consensus 233 -~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~ 309 (446)
.|..+ +....|+++|+||+++.++|++++++|++|+|.|++ |.|++...+..++.++... +.+.+.+.+++++.
T Consensus 176 ~~K~~~~~~~~~P~~ailDP~l~~~~P~~~ta~tg~DAl~Hai---E~y~s~~~np~td~~a~~ai~li~~~l~~a~~~~ 252 (395)
T PRK15454 176 GRKQVLAHASLMPDVAILDAALTEGVPSHVTAMTGIDALTHAI---EAYSALNATPFTDSLAIGAIAMIGKSLPKAVGYG 252 (395)
T ss_pred CeeEEeeCCcccCCEEEEChhhhccCCHHHHHHHHHHHHHHHH---HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34434 455699999999999999999999999999999999 8887754433444433221 23344445555443
Q ss_pred HhHhhc-----chhhhhhHhhcC----cchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH------------HHHHcCCC
Q 013271 310 AEVVSL-----DEKESGLRATLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGWI 368 (446)
Q Consensus 310 ~~~v~~-----d~~~~G~r~~l~----~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~------------la~~~g~~ 368 (446)
.+.-.+ ....+|+. ..+ ..|.++|+++.. | +++||+++|+.++..++ +++.+|..
T Consensus 253 ~d~~AR~~m~~As~laG~a-~~~~g~g~~Hal~h~lg~~--~-~ipHG~~~aillP~v~~~n~~~~~~k~~~la~~l~~~ 328 (395)
T PRK15454 253 HDLAARESMLLASCMAGMA-FSSAGLGLCHAMAHQPGAA--L-HIPHGLANAMLLPTVMEFNRMVCRERFSQIGRALRTK 328 (395)
T ss_pred CCHHHHHHHHHHHHHHHHH-HhcccchHHHhhhhhhccC--C-CCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHHhCCC
Confidence 222221 22345554 333 447777776654 4 89999999999987653 44555532
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHh
Q 013271 369 ---DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 444 (446)
Q Consensus 369 ---~~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~ 444 (446)
.++.++++.+|++++|+|+++.+. ++++++.+......+ +..+ .+. -..++++++.+.|++.|
T Consensus 329 ~~~~~~~i~~i~~l~~~lglP~~L~e~gv~~~~~~~ia~~a~~--~~~~--------~~n---P~~~t~e~i~~il~~~~ 395 (395)
T PRK15454 329 KSDDRDAINAVSELIAEVGIGKRLGDVGATSAHYGAWAQAALE--DICL--------RSN---PRTASLEQIVGLYAAAQ 395 (395)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHh--cccc--------cCC---CCCCCHHHHHHHHHhcC
Confidence 245788999999999999999875 888887655444322 1110 011 14778999999887643
No 26
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=100.00 E-value=6e-40 Score=337.42 Aligned_cols=297 Identities=19% Similarity=0.252 Sum_probs=226.1
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.|.+|+||+|++++ +++++++ +.+|++||||+++.+. +.+++.+.|++.|+ ++.+|++.++||+.+.|+++++
T Consensus 6 ~p~~i~fG~g~l~~l~~~l~~~-g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i----~~~~~~~v~~~p~~~~v~~~~~ 80 (379)
T TIGR02638 6 LNETSYFGAGAIEDIVDEVKRR-GFKKALVVTDKDLIKFGVADKVTDLLDEAGI----AYELFDEVKPNPTITVVKAGVA 80 (379)
T ss_pred CCCeEEECcCHHHHHHHHHHhc-CCCEEEEEcCcchhhccchHHHHHHHHHCCC----eEEEECCCCCCcCHHHHHHHHH
Confidence 35789999999999 9988876 4589999999998887 89999999999884 3456788999999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhh------------------cCCCeEEEEcCCcCccccccccCeEEEeeC
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASY------------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHR 231 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~------------------~~g~p~i~IPTTl~A~tds~v~~k~~i~~~ 231 (446)
.++++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||+++..++++.+
T Consensus 81 ~~~~~~~D---~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT--agTGse~t~~avi~~~ 155 (379)
T TIGR02638 81 AFKASGAD---YLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT--AGTAAEVTINYVITDE 155 (379)
T ss_pred HHHhcCCC---EEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC--CchhhhhCCEEEEEEC
Confidence 99999999 999999999999999998632 356899999999 7899999999999876
Q ss_pred Cc--cccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHH
Q 013271 232 LG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCE 307 (446)
Q Consensus 232 ~~--K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~ 307 (446)
.. |..+ +.+..|+.+|+||+++.++|++++++|++|+|.|++ |.|++.......+.++... +.+.+.+.++++
T Consensus 156 ~~~~K~~~~~~~~~P~~ai~Dp~l~~~lP~~~~a~t~~Dal~H~i---Ea~~s~~~~~~sd~~a~~a~~li~~~l~~~~~ 232 (379)
T TIGR02638 156 ENKRKFVCVDPHDIPDVAVIDAEMMYSMPKSLTAATGMDALTHAI---EGYITKGAWELTDMLHLKAIEIIARWLRSAVE 232 (379)
T ss_pred CCCeeEEEeCCCccccEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44 3333 456799999999999999999999999999999999 8887643333333333221 233344444444
Q ss_pred hhHhHhhc-----chhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH------------HHHHcCC
Q 013271 308 NKAEVVSL-----DEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGW 367 (446)
Q Consensus 308 ~~~~~v~~-----d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~------------la~~~g~ 367 (446)
+..+...+ ....+|+.. .++..|.++|+|+.. + +++||.++|+.++..++ +++.+|.
T Consensus 233 ~~~~~~aR~~l~~As~laG~a~~~~g~g~~Hal~~~l~~~--~-~i~HG~a~ai~lp~vl~~~~~~~~~~~~~la~~~g~ 309 (379)
T TIGR02638 233 GGKDLEAREQMALGQYVAGMGFSNVGLGLVHGMAHPLGAF--Y-NTPHGVANAILLPHVMEFNAEFTGEKYREIAKAMGV 309 (379)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhcC--c-CCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 33222111 233345431 234457777777764 4 89999999998886643 3444443
Q ss_pred C----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHH
Q 013271 368 I----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAV 404 (446)
Q Consensus 368 ~----~-----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~ 404 (446)
. + ++.++++.+|++++|+|+++.+. ++++++.+....
T Consensus 310 ~~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~~ 356 (379)
T TIGR02638 310 KTEGMSDEEARDAAVEAVKTLSKRVGIPEGLSELGVKEEDIPALAEA 356 (379)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHH
Confidence 1 1 23578899999999999999875 888887655544
No 27
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=100.00 E-value=1.2e-39 Score=334.57 Aligned_cols=296 Identities=21% Similarity=0.241 Sum_probs=226.4
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
+|++|+||+|++++ +++++++ +.+|++||||+.+.+. +.+++.+.|++.|+ ++.+|++.++||+.++|+++++
T Consensus 3 ~p~~i~~G~g~l~~l~~~l~~~-g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~----~~~~~~~v~~~p~~~~v~~~~~ 77 (374)
T cd08189 3 PKPKLFVGSGSLAQLPAAISQL-GVKKVLIVTDKGLVKLGLLDKVLEALEGAGI----EYAVYDGVPPDPTIENVEAGLA 77 (374)
T ss_pred CCceEEECcCHHHHHHHHHHhc-CCCeEEEEeCcchhhcccHHHHHHHHHhcCC----eEEEeCCCCCCcCHHHHHHHHH
Confidence 57899999999999 9999875 3589999999998876 78999999999884 3466789999999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCC-----------------CeEEEEcCCcCccccccccCeEEEeeCC
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG-----------------VSFIQIPTTVMAQVDSSVGGKTGINHRL 232 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g-----------------~p~i~IPTTl~A~tds~v~~k~~i~~~~ 232 (446)
.++++++| +||||||||++|+||++|..+.++ +|+|+|||| ++|||+++..+++....
T Consensus 78 ~~~~~~~d---~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt--agTGsE~t~~avi~d~~ 152 (374)
T cd08189 78 LYRENGCD---AILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTT--AGTGSEVTIAAVISDPE 152 (374)
T ss_pred HHHhcCCC---EEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECC--CccccccCCeEEEEecC
Confidence 99999999 999999999999999998876532 699999999 78999999999886543
Q ss_pred --ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHh
Q 013271 233 --GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCEN 308 (446)
Q Consensus 233 --~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~ 308 (446)
.|..+ ..+..|+.+|+||+++.++|++++++|++|+|.|++ |.|++.......+.++... +.+.+.+.+++.+
T Consensus 153 ~~~K~~~~~~~~~P~~~i~Dp~l~~t~P~~~~~a~g~Dal~h~i---E~~~s~~~~~~s~~~a~~a~~~i~~~l~~a~~~ 229 (374)
T cd08189 153 THEKYAISDPRLLPKAAALDPRLTLGLPPHITAATGMDALTHAV---EAYIGRNATPESDAYALAAIKLIFENLPKAYED 229 (374)
T ss_pred CCeeEEEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35544 356799999999999999999999999999999999 7776543222233332221 2334445555544
Q ss_pred hHhHhh-----cchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH------------HHHHcCCC
Q 013271 309 KAEVVS-----LDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGWI 368 (446)
Q Consensus 309 ~~~~v~-----~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~------------la~~~g~~ 368 (446)
..+... .....+|+.. .++..|.++|+|+.. + +++||+++|+.++..++ +++.+|.-
T Consensus 230 ~~~~~ar~~l~~as~lag~a~~~~g~g~~Hal~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~~la~~~g~~ 306 (374)
T cd08189 230 GSNLEAREAMALASYYAGLAFTRAGVGYVHAIAHQLGGV--Y-GIPHGLANAIVLPHVLEFYGDAAEDRLAELADALGLG 306 (374)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhhcC--C-CCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCC
Confidence 322211 1233455542 245568888888875 4 89999999999987654 23344431
Q ss_pred ----C-----HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHH
Q 013271 369 ----D-----DSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAV 404 (446)
Q Consensus 369 ----~-----~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~~l~~ 404 (446)
+ ++.++++.+|++++|+|+++.+ ++.+++.+....
T Consensus 307 ~~~~~~~~~~~~~i~~i~~l~~~lglP~~L~~-v~~~~~~~~a~~ 350 (374)
T cd08189 307 DAGESDSDLAAAFIDAVRELNRTLGIPTTLEA-IKASDIPAIAKR 350 (374)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCCchh-CCHHHHHHHHHH
Confidence 1 2346789999999999999988 788887555443
No 28
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=100.00 E-value=7.2e-40 Score=336.54 Aligned_cols=320 Identities=18% Similarity=0.216 Sum_probs=234.3
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.|.+|+||+|++++ ++++++. +.+|++||||+.+.+. +.+++.+.|++.++ ++.+|++.++||+.++|+++++
T Consensus 3 ~p~~i~~G~g~l~~l~~~l~~~-~~~~~livt~~~~~~~~~~~~v~~~L~~~~~----~~~~~~~v~~~p~~~~v~~~~~ 77 (376)
T cd08193 3 TPPRIVFGAGSLARLGELLAAL-GAKRVLVVTDPGILKAGLIDPLLASLEAAGI----EVTVFDDVEADPPEAVVEAAVE 77 (376)
T ss_pred CCCeEEECcCHHHHHHHHHHHc-CCCeEEEEcCcchhhCccHHHHHHHHHHcCC----eEEEECCCCCCcCHHHHHHHHH
Confidence 46789999999999 8888875 4689999999998777 88999999999884 3356788999999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhh----------------cCCCeEEEEcCCcCccccccccCeEEEeeCC-
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHRL- 232 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~----------------~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~- 232 (446)
.++++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||+++..++++.+.
T Consensus 78 ~~~~~~~D---~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT--agtgSe~t~~avi~~~~~ 152 (376)
T cd08193 78 AARAAGAD---GVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT--AGTGSEVTPIAIVTTPET 152 (376)
T ss_pred HHHhcCCC---EEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC--CcchHhhCCeEEEEcCCC
Confidence 99999999 999999999999999998865 367999999999 78999999999988654
Q ss_pred ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHH-HhhhhHhhcCCH-HHHHHHHHHHHHhh
Q 013271 233 GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ-EQNMHKLMARDP-RAFAYAIKRSCENK 309 (446)
Q Consensus 233 ~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l-~~~~~~~~~~~~-~~l~~~i~~s~~~~ 309 (446)
.|..+ .....|+.+|+||+++.++|++++++|++|+|.|++ |.|++.. .+...+.++... +.+.+.+.+++.+.
T Consensus 153 ~K~~~~~~~~~P~~ai~Dp~l~~~lP~~~~~~~~~Dal~h~~---E~y~s~~~~~p~td~~a~~ai~~i~~~l~~a~~~~ 229 (376)
T cd08193 153 LKVGVVSPHLLPDLAILDPELTLGLPPHITAATGIDAMVHAI---EAYTSRKKANPLSDLLALEALRLLGANIPRAVKDG 229 (376)
T ss_pred ceEEeeCccccCCEEEEChHHHcCCCHHHHHHHhHHHHHHHH---HHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34433 334689999999999999999999999999999999 7887654 333333332221 23334444444432
Q ss_pred HhHhh-----cchhhhhhHhhcCcc----hhhhhhhhhccCCCCCCcHHhhhhhHHHHHH------------HHHHcCCC
Q 013271 310 AEVVS-----LDEKESGLRATLNLG----HTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGWI 368 (446)
Q Consensus 310 ~~~v~-----~d~~~~G~r~~l~~g----Hti~Hale~~~~~~~i~HGeaVAig~~~~~~------------la~~~g~~ 368 (446)
.+.-. .....+|+. ..+.| |.++|+++.. + +++||+++|+.++..++ +++.+|..
T Consensus 230 ~~~~ar~~~~~As~laG~a-~~~~g~g~~Hal~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~~l~~~l~~~ 305 (376)
T cd08193 230 DDLEAREAMLLGAMYAGQA-FANAPVAAVHALAYPLGGK--F-HIPHGLSNALVLPHVLRFNAPAAEERYAELADALGPD 305 (376)
T ss_pred CcHHHHHHHHHHHHHHHHH-HhhhhHHHHHHhcchhhcC--c-CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCC
Confidence 22211 122334443 33444 6666655553 4 89999999999987653 34444432
Q ss_pred C---------HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHH
Q 013271 369 D---------DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDD 438 (446)
Q Consensus 369 ~---------~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~ 438 (446)
. ++.++++.+|++++|+|+++.+. ++++++.......-+. +..+. ..| ..++++++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~lglp~~L~e~gi~~~~~~~~a~~a~~~-~~~~~----~nP-------~~~t~~~v~~ 373 (376)
T cd08193 306 LAGASDEEAAEALIDAMEALVADLGIPQRLREVGVTEDDLPMLAEDAMKQ-TRLLV----NNP-------RELTEEDALA 373 (376)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhc-cccCC----CCC-------CCCCHHHHHH
Confidence 1 24678899999999999999876 8888876554443221 11000 001 3678888877
Q ss_pred HH
Q 013271 439 TL 440 (446)
Q Consensus 439 ~l 440 (446)
.+
T Consensus 374 i~ 375 (376)
T cd08193 374 IY 375 (376)
T ss_pred Hh
Confidence 65
No 29
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=100.00 E-value=7.7e-40 Score=331.71 Aligned_cols=312 Identities=20% Similarity=0.236 Sum_probs=233.7
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
|.+|+||+|++++ +++++.+ +.+|++||||+++++.+.+++.+.|++.+ +.+|.+.+++|+.++++++.+.+
T Consensus 1 p~~i~~G~g~l~~l~~~l~~~-g~~~~livt~~~~~~~~~~~v~~~l~~~~------~~~~~~~~~~p~~~~v~~~~~~~ 73 (337)
T cd08177 1 PQRVVFGPGALAALAAELERL-GASRALVLTTPSLATKLAERVASALGDRV------AGTFDGAVMHTPVEVTEAAVAAA 73 (337)
T ss_pred CCeEEECCCHHHHHHHHHHHc-CCCeEEEEcChHHHHHHHHHHHHHhccCC------cEEeCCCCCCCCHHHHHHHHHHH
Confidence 4678999999999 9999876 46899999999999889999999998764 13567888999999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCccccc-ccccCceEEEEeh
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLI-GAFYQPQCVLVDT 250 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~i-g~~~~P~~viiDp 250 (446)
++.++| +||||||||++|+||++|.. .++|+|+|||| + +++++++.++++.++.|..+ ..+..|+.+|+||
T Consensus 74 ~~~~~d---~IIaiGGGs~iD~aK~ia~~--~~~p~i~IPTt--a-tgse~t~~avit~~g~K~~i~~~~~~P~~~i~Dp 145 (337)
T cd08177 74 REAGAD---GIVAIGGGSTIDLAKAIALR--TGLPIIAIPTT--L-SGSEMTPIAGVTENGVKTTGRDPEVLPRTVIYDP 145 (337)
T ss_pred HhcCCC---EEEEeCCcHHHHHHHHHHHH--hcCCEEEEcCC--c-hhhhhcCeEEEecCCceeEeeCccccCCEEEECh
Confidence 999999 99999999999999999754 48999999999 4 67888888888766656544 4567999999999
Q ss_pred HhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhhHhHhhc-----chhhhhhHh
Q 013271 251 DTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENKAEVVSL-----DEKESGLRA 324 (446)
Q Consensus 251 ~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~~~~v~~-----d~~~~G~r~ 324 (446)
+++.++|++++++|++|+|.|++ |.|++...+...+.++... +.+.+.+.+.+.+..+.-.+ ....+|+..
T Consensus 146 ~l~~~~P~~~~~~~g~Dal~h~i---E~~~s~~~~~~s~~~a~~ai~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~a~ 222 (337)
T cd08177 146 ELTLTTPRRLWLSSGIRAIDHAV---EALYAPDANPIVDLLAEEGIRALAEALPRIKADPDDLDARLDALYGAWLCGTCL 222 (337)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 8887654433344332211 22333333443332222111 122344431
Q ss_pred ---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH------------HHHHcCCCCHHHHHHHHHHHHHcCCCCCC
Q 013271 325 ---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGWIDDSIVKRVHNILQQAKLPTAP 389 (446)
Q Consensus 325 ---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~------------la~~~g~~~~~~~~~i~~ll~~lGlP~~~ 389 (446)
.++..|.|+|+|+.. | +++||+++|+.++..++ +++.+|.-.++.++++.++++++|+|+++
T Consensus 223 ~~~~~g~~H~l~h~l~~~--~-~~~HG~~~ai~lp~vl~~~~~~~~~~~~~~a~~l~~~~~~~~~~i~~l~~~lglp~~l 299 (337)
T cd08177 223 GSVGMGLSHKLGHVLGGT--F-GLPHAETSCIVLPHVLAFNAPAAPEALARLARALGLGAADAADALADLARSLGAPTSL 299 (337)
T ss_pred ccccHHHHHHhhCccccC--c-CCCcHHHHHHHHHHHHHhcCcCCHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCH
Confidence 234558888877775 4 79999999998887654 33444432345689999999999999999
Q ss_pred CCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHH
Q 013271 390 PDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 440 (446)
Q Consensus 390 ~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l 440 (446)
.+. ++++++.+......+.+.+ . | ..++++++++.+
T Consensus 300 ~e~gi~~~~~~~~~~~a~~~~~~-------~-p-------~~~t~~~i~~i~ 336 (337)
T cd08177 300 ADLGVPRDDIDRAAELALADPYA-------N-P-------RPLERDAVRALL 336 (337)
T ss_pred HHcCCCHHHHHHHHHHHHhcccc-------C-C-------CCCCHHHHHHHh
Confidence 876 8999887766654432110 1 2 367888888765
No 30
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=100.00 E-value=1.9e-39 Score=334.08 Aligned_cols=321 Identities=20% Similarity=0.241 Sum_probs=236.0
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.+.+|+||+|++++ ++++++. +.+|++||+|+.+.+. +.+++.+.|++.|+ ++.+|++.++||+.++++++++
T Consensus 7 ~~~~i~~G~g~l~~l~~~~~~~-g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~----~~~~~~~v~~~p~~~~v~~~~~ 81 (382)
T PRK10624 7 LNETAYFGRGAIGALTDEVKRR-GFKKALIVTDKTLVKCGVVAKVTDVLDAAGL----AYEIYDGVKPNPTIEVVKEGVE 81 (382)
T ss_pred CCCeEEECcCHHHHHHHHHHhc-CCCEEEEEeCcchhhCcchHHHHHHHHHCCC----eEEEeCCCCCCcCHHHHHHHHH
Confidence 45789999999999 9888875 4589999999999887 89999999999884 3456788999999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhh------------------cCCCeEEEEcCCcCccccccccCeEEEeeC
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASY------------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHR 231 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~------------------~~g~p~i~IPTTl~A~tds~v~~k~~i~~~ 231 (446)
.++++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||+++..+++..+
T Consensus 82 ~~~~~~~D---~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT--agTGse~t~~avi~~~ 156 (382)
T PRK10624 82 VFKASGAD---YLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT--AGTAAEVTINYVITDE 156 (382)
T ss_pred HHHhcCCC---EEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC--CchhhhhcceeeeecC
Confidence 99999999 999999999999999987532 356899999999 7899999999988765
Q ss_pred Cc--cccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHH
Q 013271 232 LG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCE 307 (446)
Q Consensus 232 ~~--K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~ 307 (446)
.. |..+ +.+..|+.+|+||+++.++|++++++|++|++.|++ |.|++.......+.++... +.+.+.+.+++.
T Consensus 157 ~~~~k~~~~~~~~~P~~ailDp~l~~tlP~~~~a~~g~Dal~Hai---E~y~s~~~~p~sd~~a~~ai~~i~~~l~~~~~ 233 (382)
T PRK10624 157 EKRRKFVCVDPHDIPQVAFVDADMMDSMPPGLKAATGVDALTHAI---EGYITRGAWALTDMLHLKAIEIIAGALRGAVA 233 (382)
T ss_pred CCCeeEEeeCccccCCEEEEChHhhcCCCHHHHHHHHHhHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 43 3322 556799999999999999999999999999999999 8887643333333332211 222333333333
Q ss_pred hhHh---HhhcchhhhhhHhhcC----cchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH------------HHHHcCCC
Q 013271 308 NKAE---VVSLDEKESGLRATLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGWI 368 (446)
Q Consensus 308 ~~~~---~v~~d~~~~G~r~~l~----~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~------------la~~~g~~ 368 (446)
+..+ -+......+|+. ..+ ..|.++|+++.. + +++||.++|+.++..++ +++.+|..
T Consensus 234 ~~~~aR~~~~~as~laG~a-~~~~g~g~~Hal~h~l~~~--~-~ipHG~~~ai~lp~vl~~~~~~~~~k~~~la~~~g~~ 309 (382)
T PRK10624 234 GDKEAGEGMALGQYIAGMG-FSNVGLGLVHGMAHPLGAF--Y-NTPHGVANAILLPHVMEYNADFTGEKYRDIARAMGVK 309 (382)
T ss_pred CCHHHHHHHHHHHHHHHHH-HhccchHHHHHhhhHHhhC--C-CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCC
Confidence 2110 111123344553 333 347777777664 4 89999999998886542 33444532
Q ss_pred ----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHH
Q 013271 369 ----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDD 438 (446)
Q Consensus 369 ----~-----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~ 438 (446)
+ ++.++++.+|++++|+|+++.+. ++++++.+.....-+ +..+ .+++ ..++++++++
T Consensus 310 ~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~~a~~--~~~~--------~~nP---~~~t~~~i~~ 376 (382)
T PRK10624 310 VEGMSLEEARNAAVEAVKALNRDVGIPPHLRDVGVKEEDIPALAQAAFD--DVCT--------GGNP---REATLEDIVE 376 (382)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHh--CcCC--------CCCC---CCCCHHHHHH
Confidence 1 23578899999999999999885 888887655444322 1110 1111 4778999999
Q ss_pred HHHH
Q 013271 439 TLYA 442 (446)
Q Consensus 439 ~l~~ 442 (446)
.|++
T Consensus 377 i~~~ 380 (382)
T PRK10624 377 LYKK 380 (382)
T ss_pred HHHH
Confidence 8875
No 31
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=100.00 E-value=3.1e-39 Score=332.31 Aligned_cols=322 Identities=21% Similarity=0.251 Sum_probs=233.2
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCch-hH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVA-PL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 168 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~-~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~ 168 (446)
.|.+|+||+|++++ ++++++. ++|++||||+.+. .. +.+++.+.|++.|+ ++.+|++.++||++++|++++
T Consensus 3 ~p~~i~fG~g~l~~l~~~~~~~--g~r~livt~~~~~~~~g~~~~v~~~L~~~~~----~~~~~~~v~~~p~~~~v~~~~ 76 (380)
T cd08185 3 QPTKIVFGAGKLNELGEEALKP--GKKALIVTGNGSSKKTGYLDRVIELLKQAGV----EVVVFDKVEPNPTTTTVMEGA 76 (380)
T ss_pred CCCeEEECcCHHHHHHHHHHhc--CCeEEEEeCCCchhhccHHHHHHHHHHHcCC----eEEEeCCccCCCCHHHHHHHH
Confidence 46889999999999 8888873 5999999999874 33 88999999999884 345678899999999999999
Q ss_pred HHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh---------------------cCCCeEEEEcCCcCccccccccCeEE
Q 013271 169 DKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---------------------LRGVSFIQIPTTVMAQVDSSVGGKTG 227 (446)
Q Consensus 169 ~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~---------------------~~g~p~i~IPTTl~A~tds~v~~k~~ 227 (446)
+.++++++| +||||||||++|+||++|..+ .+.+|+|+|||| ++|||++++.++
T Consensus 77 ~~~~~~~~D---~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt--agTGSE~t~~av 151 (380)
T cd08185 77 ALAREEGCD---FVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTT--AGTGSEADPWAV 151 (380)
T ss_pred HHHHHcCCC---EEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCC--ChhhhccCCeEE
Confidence 999999999 999999999999999998752 136899999999 789999999999
Q ss_pred EeeCCc--cccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHH
Q 013271 228 INHRLG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIK 303 (446)
Q Consensus 228 i~~~~~--K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~ 303 (446)
++.+.. |..+ .....|+++|+||+++.++|++++++|++|+|.|++ |.|++...+...+.++... +.+.+.+.
T Consensus 152 i~~~~~~~K~~~~~~~~~P~~ailDp~l~~~~P~~~~aatg~Dal~h~i---Ea~~s~~~~~~s~~~a~~a~~li~~~l~ 228 (380)
T cd08185 152 ITNPETKEKIGLGHPATFPKISIVDPELMLTVPPHLTAYTGFDAFFHAF---EAYIANNANPMSDMLALEAIELIAKYLP 228 (380)
T ss_pred EEcCCCCeeEEecCCCccccEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCChHHHHHHHHHHHHHHHHHH
Confidence 987643 4433 344689999999999999999999999999999999 7776533222233332211 22333444
Q ss_pred HHHHhhHhH-----hhcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHH------------HH
Q 013271 304 RSCENKAEV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SY 363 (446)
Q Consensus 304 ~s~~~~~~~-----v~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~l------------a~ 363 (446)
+++.+..+. +......+|+.. .++..|.++|+|+.. +++++||+++|+.++..++. ++
T Consensus 229 ~a~~~~~~~~ar~~~~~as~laG~a~~~~g~g~~Hai~~~l~~~--~~~i~HG~~~ai~lp~vl~~~~~~~~~~~~~la~ 306 (380)
T cd08185 229 RAVKDGSDLEAREKMAWANTLGGMVEANSGCTSPHALEHALSGL--HPDLPHGAGLAMLSPAYFEFFARKAPEKFAFVAR 306 (380)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHcCccchhhhHhhChHhcc--CCCCChHHHHHHHhHHHHHHhhhhCHHHHHHHHH
Confidence 444332221 112233455542 234568888888765 33799999999988866432 11
Q ss_pred Hc--CCCC----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHH
Q 013271 364 RL--GWID----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKAL 436 (446)
Q Consensus 364 ~~--g~~~----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l 436 (446)
.. +..+ .+.++++.+|++++|+|+++.+. ++++++.+......+.....+ .+++ ..++++++
T Consensus 307 ~~~~~~~~~~~~~~~~~~i~~~~~~lglP~~L~e~gv~~~~~~~~a~~a~~~~~~~~--------~~nP---~~~t~~~~ 375 (380)
T cd08185 307 AEAAGLEDEEAAEDFIEALRKLLKRIGLDDLLSDLGVTKEDIPKLADNARETMGGLF--------EADP---AELTREDI 375 (380)
T ss_pred hccCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHHhccccc--------CCCC---CcCCHHHH
Confidence 11 1111 23578899999999999999876 888888766655443211110 1111 46788888
Q ss_pred HHHH
Q 013271 437 DDTL 440 (446)
Q Consensus 437 ~~~l 440 (446)
++.+
T Consensus 376 ~~i~ 379 (380)
T cd08185 376 EEIY 379 (380)
T ss_pred HHHh
Confidence 8765
No 32
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=100.00 E-value=3.2e-39 Score=332.43 Aligned_cols=325 Identities=19% Similarity=0.173 Sum_probs=233.9
Q ss_pred eeEEEccCcCCC-hhHhhhcC--CCCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHH
Q 013271 94 YPIYIGSGLLDH-PDLLQKHV--QGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 168 (446)
Q Consensus 94 ~~I~~G~g~~~~-~~~l~~~~--~~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~ 168 (446)
++|+||+|++++ +++++++. +.+|++||||+.+.+. +.+++.+.|++.|+ .+.+|+++++||+++++++++
T Consensus 2 t~i~fG~g~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi----~~~~f~~v~~~p~~~~v~~~~ 77 (383)
T cd08186 2 TTLYFGVGAIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGI----EYVLYNKVTPNPTVDQVDEAA 77 (383)
T ss_pred CeEEECcCHHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCC----eEEEeCCCCCCCCHHHHHHHH
Confidence 578999999999 99888741 2489999999998775 57999999998884 345778899999999999999
Q ss_pred HHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh-----------------cCCCeEEEEcCCcCccccccccCeEEEeeC
Q 013271 169 DKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-----------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHR 231 (446)
Q Consensus 169 ~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~-----------------~~g~p~i~IPTTl~A~tds~v~~k~~i~~~ 231 (446)
+.++++++| +||||||||++|+||++|..+ ...+|+|+|||| ++|||++++.+++...
T Consensus 78 ~~~~~~~~D---~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT--agTGSE~t~~avi~~~ 152 (383)
T cd08186 78 KLGREFGAQ---AVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT--HGTGTEVDRFAVASID 152 (383)
T ss_pred HHHHHcCCC---EEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC--ChhhhhhCCeEEEEEc
Confidence 999999999 999999999999999998753 135899999999 7899999999998765
Q ss_pred C--ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHH
Q 013271 232 L--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCE 307 (446)
Q Consensus 232 ~--~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~ 307 (446)
. .|..+ .....|+.+|+||+++.++|++++++|++|+|.|++ |.|++...+...+.++... +.+.+.+.+++.
T Consensus 153 ~~~~K~~~~~~~~~P~~ai~Dp~l~~~~P~~~~a~tg~DAl~Hai---E~~~s~~~~~~sd~~a~~a~~li~~~l~~a~~ 229 (383)
T cd08186 153 ETEEKPGIAYDCIYPDYSIDDPALTTTLPPDQTIYTSIDALNHVV---EAATTTTANPYSILLAKEAVRLIAEYLPKALE 229 (383)
T ss_pred CCCceEEEeCCccccCEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 24333 444699999999999999999999999999999999 7887643333333332221 233344444444
Q ss_pred hhHhHhhc-----chhhhhhHhhcC----cchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH------------HHHHcC
Q 013271 308 NKAEVVSL-----DEKESGLRATLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLG 366 (446)
Q Consensus 308 ~~~~~v~~-----d~~~~G~r~~l~----~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~------------la~~~g 366 (446)
+..+...+ ....+|+. ..+ ..|.++|+|... +.+++||+++|+.++..++ +++.+|
T Consensus 230 ~~~~~~ar~~m~~as~laG~a-~~~~~~g~~Hai~~~l~~~--~~~ipHG~~~aillp~vl~~n~~~~~~~~~~la~~~~ 306 (383)
T cd08186 230 EPDNLQARYWLLYASAIAGIA-IDNGLLHLTHALEHPLSAL--KPDLPHGAGLAILLPAVVKHIYPATPEILAELLRPLV 306 (383)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-HhcchhHHHHHhcCchhcC--CCCCChHHHHHHHHHHHHHHhhhhCHHHHHHHHHHhC
Confidence 33222111 22334553 333 346666666553 1379999999998887653 333333
Q ss_pred CC--C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHH
Q 013271 367 WI--D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDD 438 (446)
Q Consensus 367 ~~--~-----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~ 438 (446)
.. . ++.++++.+|++++|+|+++.+. ++++++........+. ......+-..| ..++++++.+
T Consensus 307 ~~~~~~~~~a~~~i~~l~~l~~~lglP~~L~~~gv~~~~~~~~a~~a~~~--~~~~~~~~~nP-------~~~t~e~i~~ 377 (383)
T cd08186 307 PGLKGVPEEAEKAAKAVEKWLFSIGITEKLSDYGFTEGDVEKLTELAVTT--PSLKLLLSLAP-------VEASREVIAR 377 (383)
T ss_pred cccCCchHHHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHhc--ccccccccCCC-------CCCCHHHHHH
Confidence 11 1 24578999999999999999876 8888876554443332 11100000012 4788999998
Q ss_pred HHHH
Q 013271 439 TLYA 442 (446)
Q Consensus 439 ~l~~ 442 (446)
.|++
T Consensus 378 il~~ 381 (383)
T cd08186 378 IYTD 381 (383)
T ss_pred HHHH
Confidence 8875
No 33
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=100.00 E-value=3.5e-39 Score=330.78 Aligned_cols=319 Identities=16% Similarity=0.162 Sum_probs=236.0
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
|.+|+||+|++++ +++++++ +.+|++||+|+++.+. +.+++.+.|++.|+ .+.+|.+.++||+.+.|+++++.
T Consensus 2 p~~i~~G~g~~~~l~~~l~~~-g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~----~~~~~~~v~~~p~~~~v~~~~~~ 76 (370)
T cd08192 2 PTRIRFGAGAIKELPAECAEL-GIKRPLIVTDPGLAALGLVARVLALLEDAGL----AAALFDEVPPNPTEAAVEAGLAA 76 (370)
T ss_pred CceEEECcCHHHHHHHHHHHc-CCCeEEEEcCcchhhCccHHHHHHHHHHcCC----eEEEeCCCCCCCCHHHHHHHHHH
Confidence 5789999999999 9998875 4589999999998877 78999999999884 33557788899999999999999
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhhc--------------------CCCeEEEEcCCcCccccccccCeEEEee
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASYL--------------------RGVSFIQIPTTVMAQVDSSVGGKTGINH 230 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~--------------------~g~p~i~IPTTl~A~tds~v~~k~~i~~ 230 (446)
+++.++| +||||||||++|+||++|..+. ..+|+|+|||| ++|||+++..+++..
T Consensus 77 ~~~~~~d---~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt--agtgse~t~~avi~~ 151 (370)
T cd08192 77 YRAGGCD---GVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTT--AGTGSEVGRAAVITD 151 (370)
T ss_pred HHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCC--CchhhhhCCceEEEe
Confidence 9999999 9999999999999999987631 24899999999 778999999998876
Q ss_pred C--Cccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHH
Q 013271 231 R--LGKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSC 306 (446)
Q Consensus 231 ~--~~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~ 306 (446)
+ +.|..+ .....|+.+|+||+++.++|++++++|++|+|.|++ |.|++...+...+.++... +.+.+.+.+++
T Consensus 152 ~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~~~Dal~h~~---E~~~s~~~~~~s~~~a~~a~~~~~~~l~~~~ 228 (370)
T cd08192 152 EDTGRKLIIFSPHLLPKAAICDPELTLGLPAGLTAATGMDALTHCI---EAYLSPGFNPMADGIALEGLRLISRHLERAV 228 (370)
T ss_pred CCCCeeEEeeCCcccCCEEEEChhhhhCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 345544 345689999999999999999999999999999999 7776543333333332211 22334444444
Q ss_pred HhhHhH-----hhcchhhhhhHh--hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHH------------HHHcCC
Q 013271 307 ENKAEV-----VSLDEKESGLRA--TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLGW 367 (446)
Q Consensus 307 ~~~~~~-----v~~d~~~~G~r~--~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~l------------a~~~g~ 367 (446)
.+..+. +......+|+.. .+|..|.++|+|+.. | +++||+++|+.++..+++ ++.++.
T Consensus 229 ~~~~~~~ar~~~~~as~laG~a~~~~~g~~Hal~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~k~~~~a~~~~~ 305 (370)
T cd08192 229 RDGGDLEARGGMMMAASMGAMAFQKGLGAVHSLSHPLGAL--Y-NLHHGLLNAVLLPYVLRFNRPAIEEKIARLARALAM 305 (370)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHhhccHHHHHhhhHHhhC--C-CCChHHHHHHHHHHHHHHhhhcCHHHHHHHHHHhCC
Confidence 432221 112234455542 234568888888875 4 899999999999877643 222332
Q ss_pred C---CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHH
Q 013271 368 I---DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 440 (446)
Q Consensus 368 ~---~~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l 440 (446)
. .++.++++.+|++++|+|+++.+. ++++++.+.....-+. ... .+++ ..++++++.+.+
T Consensus 306 ~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~~a~~~--~~~--------~~np---~~~~~~~i~~i~ 369 (370)
T cd08192 306 GLGGFADFADAILALNARLGIPHTLRELGVDEDDLDRIAEKALAD--PSH--------ATNP---RPATAEDYRALL 369 (370)
T ss_pred chhHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhC--ccc--------CCCC---CCCCHHHHHHHh
Confidence 1 134578999999999999999876 8888876665543321 110 1111 467888888765
No 34
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=100.00 E-value=4e-39 Score=331.15 Aligned_cols=320 Identities=18% Similarity=0.205 Sum_probs=235.8
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.|.+|+||+|++++ +++++.+ +.+|++||+|+.+.+. +.+++.+.|++.|+ .+.+|++.++||+.++|+++.+
T Consensus 5 ~p~~i~~G~g~l~~l~~~l~~~-g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~----~~~~f~~v~~~p~~~~v~~~~~ 79 (377)
T cd08176 5 LPPTNLFGAGAIKEIGDELKNL-GFKKALIVTDKGLVKIGVVEKVTDVLDEAGI----DYVIYDGVKPNPTITNVKDGLA 79 (377)
T ss_pred CCCeEEECcCHHHHHHHHHHHh-CCCeEEEECCchHhhcCcHHHHHHHHHHcCC----eEEEeCCCCCCCCHHHHHHHHH
Confidence 46899999999999 8888875 3589999999998884 89999999998884 3467788899999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHh----------------hcCCCeEEEEcCCcCccccccccCeEEEeeCCc
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAAS----------------YLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLG 233 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~----------------~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~ 233 (446)
.++++++| +||||||||++|+||++|.. ..+++|+|+|||| ++|||++++.++++.+..
T Consensus 80 ~~~~~~~D---~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt--agTgSe~t~~avi~~~~~ 154 (377)
T cd08176 80 VFKKEGCD---FIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT--AGTASEVTINYVITDEER 154 (377)
T ss_pred HHHhcCCC---EEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC--CcchhccCCcEEEEEcCC
Confidence 99999999 99999999999999999864 2357999999999 789999999999987643
Q ss_pred --cccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhh
Q 013271 234 --KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENK 309 (446)
Q Consensus 234 --K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~ 309 (446)
|..+ .....|+.+|+||+++.++|++++++|++|++.|++ |.|++.......+.++... +.+.+.+.+++.+.
T Consensus 155 ~~K~~~~~~~~~P~~~ivDp~l~~~~P~~~~a~~~~Dal~h~~---E~~~s~~~~~~s~~~a~~a~~~i~~~l~~~~~~~ 231 (377)
T cd08176 155 KVKMVIVDPNDIPIVAVNDPELMVGMPPGLTAATGMDALTHAI---EAYVSTGANPITDACALKAIELIAKNLRRAVANG 231 (377)
T ss_pred CceeEEeCccccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333 344689999999999999999999999999999999 7777643222233332211 22333344444332
Q ss_pred HhH-----hhcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHH------------HHHcCCC-
Q 013271 310 AEV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLGWI- 368 (446)
Q Consensus 310 ~~~-----v~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~l------------a~~~g~~- 368 (446)
.+. +......+|+.. .+|..|.++|+|+.. + +++||+++|+.++..+++ ++.+|..
T Consensus 232 ~~~~ar~~l~~as~laG~a~~~~g~g~~Hal~h~l~~~--~-~i~HG~~~ai~lp~vl~~~~~~~~~k~~~~a~~lg~~~ 308 (377)
T cd08176 232 KDLEAREGMAYAQYLAGMAFNNAGLGYVHSMAHQLGGF--Y-DLPHGVCNAILLPHVMEYNAPACPERFADIAEAMGVDT 308 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHhhc--C-CCChHHHHHHHHHHHHHHhhhcCHHHHHHHHHHhCCCC
Confidence 211 112234455542 345568888888765 4 799999999999876543 3344542
Q ss_pred ---C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHH
Q 013271 369 ---D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDT 439 (446)
Q Consensus 369 ---~-----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~ 439 (446)
+ .+.++++.+|++++|+|+++.+. ++++++.+.....-+ +... .+++ ..++++++.+.
T Consensus 309 ~~~~~~~~~~~~~~~i~~l~~~lglP~~L~e~gv~~~~~~~~a~~a~~--~~~~--------~~~p---~~~t~~~i~~i 375 (377)
T cd08176 309 EGLSDEEAAEAAIDAVRALSEDVGIPAGLRELGVKEEDFELLAENALK--DACA--------GGNP---RKATKEDIIAI 375 (377)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHh--CcCC--------CCCC---CCCCHHHHHHH
Confidence 1 13578999999999999999875 888887655443322 1110 1111 46788888876
Q ss_pred H
Q 013271 440 L 440 (446)
Q Consensus 440 l 440 (446)
|
T Consensus 376 l 376 (377)
T cd08176 376 Y 376 (377)
T ss_pred h
Confidence 5
No 35
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=100.00 E-value=2.9e-39 Score=329.61 Aligned_cols=294 Identities=18% Similarity=0.224 Sum_probs=220.2
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.|++|+||+|++++ ++++. .+|++||||+.+.+. +.+++.+.|++. ...+|+++|+||+.++++++++
T Consensus 3 ~p~~I~~G~g~~~~l~~~~~----~~r~lvVtd~~~~~~g~~~~v~~~L~~~------~~~~~~~v~~~pt~~~v~~~~~ 72 (355)
T TIGR03405 3 NPVRIHFGAGSLALAPQLLH----GRRVVVVTFPEARALGLARRLEALLGGR------LAALIDDVAPNPDVAQLDGLYA 72 (355)
T ss_pred CCCeEEECCCHHHHHHHHhC----CCeEEEEECcchhhcchHHHHHHHhccC------cEEEeCCCCCCcCHHHHHHHHH
Confidence 46899999999999 77763 489999999998775 788899999643 2356899999999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhh--------------------cCCCeEEEEcCCcCccccccccCeEEEe
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMAQVDSSVGGKTGIN 229 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~--------------------~~g~p~i~IPTTl~A~tds~v~~k~~i~ 229 (446)
.+++++ .|.|+||||||||++|+||++|..+ .+++|+|+|||| ++|||++++.+++.
T Consensus 73 ~~~~~~-~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTT--agTGSE~t~~avi~ 149 (355)
T TIGR03405 73 RLWGDE-GACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTT--AGTGSEVTPWATVW 149 (355)
T ss_pred HHHhcC-CCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCC--CcchhhhcCeEEEE
Confidence 999988 3334999999999999999998761 246899999999 78999999999887
Q ss_pred eCC--ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHH
Q 013271 230 HRL--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRS 305 (446)
Q Consensus 230 ~~~--~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s 305 (446)
.+. .|..+ ..+..|+.+|+||+++.++|++++++|++|+|.|++ |.|++...+..++.++... +.+.+.+.++
T Consensus 150 d~~~~~K~~~~~~~~~P~~ailDp~l~~t~P~~~~a~tg~Dal~hai---E~~~s~~~~p~sd~~a~~a~~li~~~L~~~ 226 (355)
T TIGR03405 150 DAENSKKYSLHLPFTYPEAAIVDAALMLSLPREHTLSTGLDALSHAL---ESIWNVNANPVSRGLAIQAAADISRALPEV 226 (355)
T ss_pred eCCCCeeEEeccCCccCCEEEEChHHHcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 643 35434 445699999999999999999999999999999999 8887754444444443221 3344555555
Q ss_pred HHhhHhHhhc-----chhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHH------------HHHc
Q 013271 306 CENKAEVVSL-----DEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRL 365 (446)
Q Consensus 306 ~~~~~~~v~~-----d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~l------------a~~~ 365 (446)
+.+..+...+ ....+|+.. .++..|.++|+|... + +++||+++|+.++..++. +..+
T Consensus 227 ~~~~~d~~aR~~~~~as~laG~a~~~~~~g~~Hal~~~l~~~--~-~i~HG~~~aillp~vl~~n~~~~~~~~~~~~~~~ 303 (355)
T TIGR03405 227 LAQPGDLALRSDMALAALKAGLAFSNTKTALAHSISYEMTLR--H-GVPHGIACSFTLPTVLRTALGRNPSRDALLQAVF 303 (355)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHhhchhccC--C-CCCcHHHHHHHHHHHHHHhhccCHHHHHHHHHHh
Confidence 5543332222 233445531 233447777776653 4 899999999999876543 2333
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHh
Q 013271 366 GWIDDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVD 405 (446)
Q Consensus 366 g~~~~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~d 405 (446)
| ..++.++++.+|++++|+|+++.+. ++++++.+.....
T Consensus 304 g-~~~~~~~~i~~l~~~lglP~~L~~~gv~~~~~~~~a~~a 343 (355)
T TIGR03405 304 G-DTASAPARLRAFLDTLGVKTRFADYGVSRDEARRMVGEA 343 (355)
T ss_pred C-cHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHH
Confidence 3 1246788999999999999999875 8888876654443
No 36
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=100.00 E-value=1.1e-38 Score=327.70 Aligned_cols=287 Identities=24% Similarity=0.315 Sum_probs=217.3
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
|.+|+||+|++++ ++++++. +++|++||||+++.+. +.+++.+.|++.|+ .+.+|.+.++||+.++|+++++.
T Consensus 1 P~~i~~G~g~~~~l~~~~~~~-~~~r~livt~~~~~~~g~~~~v~~~L~~~gi----~~~~~~~v~~~p~~~~v~~~~~~ 75 (375)
T cd08194 1 PRTIIIGEGAVDETGAVLADL-GGKRPLIVTDKVMVKLGLVDKLTDSLKKEGI----ESAIFDDVVSEPTDESVEEGVKL 75 (375)
T ss_pred CCeEEECcCHHHHHHHHHHHc-CCCeEEEEcCcchhhcchHHHHHHHHHHCCC----eEEEECCCCCCcCHHHHHHHHHH
Confidence 4678999999999 9888865 4689999999998876 88999999999884 34567888999999999999999
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHh----------------hcCCCeEEEEcCCcCccccccccCeEEEeeCC--
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAAS----------------YLRGVSFIQIPTTVMAQVDSSVGGKTGINHRL-- 232 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~----------------~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~-- 232 (446)
++++++| +||||||||++|+||++|.. +.+++|+|+|||| ++|||++++.+++..+.
T Consensus 76 ~~~~~~D---~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt--agtGsE~t~~avi~~~~~~ 150 (375)
T cd08194 76 AKEGGCD---VIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT--AGTGSEVTRFTVITDTKTD 150 (375)
T ss_pred HHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC--CccccccCCeEEEEECCCC
Confidence 9999999 99999999999999999864 3467999999999 77899999998887543
Q ss_pred ccc-ccccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhhH
Q 013271 233 GKN-LIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENKA 310 (446)
Q Consensus 233 ~K~-~ig~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~~ 310 (446)
.|. +.+....|+++|+||+++.++|++++++|++|+|.|++ |.|++...+...+.++... +.+.+.+.+++.+..
T Consensus 151 ~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~aatg~Dal~h~i---E~~~s~~~~~~s~~~a~~a~~li~~~l~~a~~~~~ 227 (375)
T cd08194 151 EKMLLKGLALLPKAAIVDPELTLTSPPRVTAATGIDALTHAI---EAYVSRKAQPMTDLFALSAIKLIGKNLRTAYLNPD 227 (375)
T ss_pred ceEEEeCCcccCCEEEEChHHHcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344 34566799999999999999999999999999999999 7777643333333332211 233344444444322
Q ss_pred hH-----hhcchhhhhhHhhcCc----chhhhhhhhhccCCCCCCcHHhhhhhHHHHHH------------HHHHcCCCC
Q 013271 311 EV-----VSLDEKESGLRATLNL----GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGWID 369 (446)
Q Consensus 311 ~~-----v~~d~~~~G~r~~l~~----gHti~Hale~~~~~~~i~HGeaVAig~~~~~~------------la~~~g~~~ 369 (446)
+. +......+|+. ..+. .|.++|++... + +++||+++|+.++..++ +++.+|.-+
T Consensus 228 ~~~ar~~l~~as~laG~a-~~~~~~g~~Hal~~~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~a~~lg~~~ 303 (375)
T cd08194 228 NREAREEMMLGATEAGIA-FSNASVALVHGMSRPIGAL--F-HVPHGLSNAMLLPAVTEFSLPSAPERYADIARAMGEAN 303 (375)
T ss_pred CHHHHHHHHHHHHHHHHH-HhchhHHHHHHhhhhhhhC--C-CCChHHHHHHHHHHHHHhhcccCHHHHHHHHHHhCCCC
Confidence 22 11123345554 2233 46666666554 4 89999999998887653 445555421
Q ss_pred ---------HHHHHHHHHHHHHcCCCCCCCCC-CCHHH
Q 013271 370 ---------DSIVKRVHNILQQAKLPTAPPDT-MTVEM 397 (446)
Q Consensus 370 ---------~~~~~~i~~ll~~lGlP~~~~~~-i~~e~ 397 (446)
++.++++.+|++++|+|+ +.+. ++.++
T Consensus 304 ~~~~~~~~~~~~~~~i~~l~~~~glP~-L~~~gv~~~~ 340 (375)
T cd08194 304 EGDSDREAAEKLIEALKELNRELEVPT-LREYGIDKDA 340 (375)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCC-HHhcCCChHh
Confidence 235788999999999995 7765 77776
No 37
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=100.00 E-value=1.7e-38 Score=326.40 Aligned_cols=319 Identities=20% Similarity=0.238 Sum_probs=230.5
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
+.+|+||+|++++ +++++.+ +.+|++||+|+.+.+. +.+++.+.|++.|+ .+.+|++.++||+.++++++++.
T Consensus 6 ~~~i~~G~g~l~~l~~~l~~~-g~~~~livt~~~~~~~~~~~~v~~~L~~~~~----~~~~~~~v~~~p~~~~v~~~~~~ 80 (377)
T cd08188 6 APEIIFGRGALKLAGRYARRL-GAKKVLLVSDPGVIKAGWVDRVIESLEEAGL----EYVVFSDVSPNPRDEEVMAGAEL 80 (377)
T ss_pred CCceEECcCHHHHHHHHHHHc-CCCeEEEEeCcchhhCccHHHHHHHHHHcCC----eEEEeCCCCCCCCHHHHHHHHHH
Confidence 4668999999999 9888875 4589999999998876 88999999998884 33567888899999999999999
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhhc----------------CCCeEEEEcCCcCccccccccCeEEEeeCC--
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGGKTGINHRL-- 232 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~----------------~g~p~i~IPTTl~A~tds~v~~k~~i~~~~-- 232 (446)
+++.++| +||||||||++|+||++|.... +.+|+|+|||| ++|||+++..+++....
T Consensus 81 ~~~~~~d---~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT--~gTgSE~t~~avi~d~~~~ 155 (377)
T cd08188 81 YLENGCD---VIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTT--AGSGADVSQFAIITDTERK 155 (377)
T ss_pred HHhcCCC---EEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCC--CccccccCCeEEEEeCCCC
Confidence 9999999 9999999999999999986431 24799999999 77999999999887543
Q ss_pred ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhhH
Q 013271 233 GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENKA 310 (446)
Q Consensus 233 ~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~~ 310 (446)
.|..+ +....|+.+|+||+++.++|++++++|++|+|+|++ |.|++...+...+.++... +.+.+.+.+++.+..
T Consensus 156 ~K~~i~~~~~~P~~vi~Dp~l~~~lP~~~~~~~~~Dal~hai---E~~~s~~~~~~sd~~a~~a~~~i~~~L~~~~~~~~ 232 (377)
T cd08188 156 VKMAIISKSLVPDIALIDPETLTTMPPELTAATGLDALTHAI---EAYVSNASSPLTDLHALEAIRLIAANLPPAIANPT 232 (377)
T ss_pred eeEEEeCccccCCEEEECHHHHcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34434 344589999999999999999999999999999999 7887643333333332211 223344444444322
Q ss_pred hHhhc-----chhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH------------HHHHcCCCC-
Q 013271 311 EVVSL-----DEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGWID- 369 (446)
Q Consensus 311 ~~v~~-----d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~------------la~~~g~~~- 369 (446)
+.-.+ ....+|+.. .++..|.++|+|... + +++||+++|+.++..++ +++.+|...
T Consensus 233 ~~~ar~~l~~As~laG~a~~~~~~g~~Hal~~~l~~~--~-~i~HG~~~ai~lp~vl~~~~~~~~~~~~~la~~~g~~~~ 309 (377)
T cd08188 233 DLEARESMMLASLQAGLAFSNAILGAVHAMAHSLGGL--L-DLPHGECNAILLPHVMEFNYPAAPERYARIAEALGLDVR 309 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhhhhhC--c-CCChHHHHHHHHHHHHHhhhhcCHHHHHHHHHHhCCCCC
Confidence 22111 223345431 123346666666654 4 89999999999987654 344445321
Q ss_pred --------HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHH
Q 013271 370 --------DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 440 (446)
Q Consensus 370 --------~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l 440 (446)
++.++++.+|++++|+|+++.+. ++++++.+.....- .+..+. ..| ..++++++.+.|
T Consensus 310 ~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~ia~~a~--~~~~~~----~~p-------~~~~~~~i~~il 376 (377)
T cd08188 310 GLTTEEAALAVIEAVRRLRAALGVPETLGDLGVKREDIPLLARNAL--KDACMV----TNP-------RDATVEDIEAIY 376 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHH--hCcccC----CCC-------CCCCHHHHHHHh
Confidence 24578999999999999999876 88888765433322 111111 011 367888888765
No 38
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=100.00 E-value=1.6e-38 Score=330.21 Aligned_cols=324 Identities=19% Similarity=0.193 Sum_probs=234.1
Q ss_pred eeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 94 YPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 94 ~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
.+|+||+|++++ +++++++ +.+|++||||+++.+. +.+++.+.|++.|+ .+.+|++.++||++++|+++++.+
T Consensus 2 ~~i~fG~g~~~~l~~~l~~~-g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi----~~~~f~~v~~~p~~~~v~~~~~~~ 76 (414)
T cd08190 2 SNIRFGPGVTAEVGMDLKNL-GARRVCLVTDPNLAQLPPVKVVLDSLEAAGI----NFEVYDDVRVEPTDESFKDAIAFA 76 (414)
T ss_pred CeEEECcCHHHHHHHHHHHc-CCCeEEEEECcchhhcchHHHHHHHHHHcCC----cEEEeCCCCCCcCHHHHHHHHHHH
Confidence 468999999999 9999876 4699999999998887 78999999998884 345678889999999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhc----------------------CCCeEEEEcCCcCccccccccCeEEEe
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------------RGVSFIQIPTTVMAQVDSSVGGKTGIN 229 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~----------------------~g~p~i~IPTTl~A~tds~v~~k~~i~ 229 (446)
+++++| +||||||||++|+||++|..+. +.+|+|+|||| ++|||+++..++++
T Consensus 77 ~~~~~D---~IIaiGGGSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT--agTGSE~t~~avi~ 151 (414)
T cd08190 77 KKGQFD---AFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTT--AGTGSETTGVAIFD 151 (414)
T ss_pred HhcCCC---EEEEeCCccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCC--Cchhhhhccceeee
Confidence 999999 9999999999999999985431 12699999999 77899999999987
Q ss_pred eCC--ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHH-------------------Hhhh
Q 013271 230 HRL--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ-------------------EQNM 287 (446)
Q Consensus 230 ~~~--~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l-------------------~~~~ 287 (446)
.+. .|..+ .....|+.+|+||+++.++|++++++|++|+|+|++ |.|++.. .+..
T Consensus 152 ~~~~~~K~~i~~~~~~P~~ailDp~l~~tlP~~~ta~tg~DAl~hai---Eay~s~~~~~~~~~~~~~~~~~~~~~~~p~ 228 (414)
T cd08190 152 LPELKAKTGIASRALKPTLGIVDPLNTLTMPSRVTASSGLDVLCHAL---ESYTAIPYNQRPPRPSNPIQRPAYQGSNPI 228 (414)
T ss_pred ccCCCeeEEeeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHhcccccccccccccccccccccCCCHH
Confidence 543 35444 345689999999999999999999999999999999 8887641 1112
Q ss_pred hHhhcCCH-HHHHHHHHHHHHhhHhHh-----hcchhhhhhHh---hcCcchhhhhhhhhccC------C----CCCCcH
Q 013271 288 HKLMARDP-RAFAYAIKRSCENKAEVV-----SLDEKESGLRA---TLNLGHTFGHAIETGFG------Y----GQWLHG 348 (446)
Q Consensus 288 ~~~~~~~~-~~l~~~i~~s~~~~~~~v-----~~d~~~~G~r~---~l~~gHti~Hale~~~~------~----~~i~HG 348 (446)
.+.++... +.+.+.+.+++.+..+.. ......+|+.. .++..|.++|++...++ | ++++||
T Consensus 229 sd~~a~~ai~li~~~l~~a~~~~~d~~AR~~~~~As~laG~a~~~~g~~~~Hai~~~l~~~~~~~~~~~~~~~~~~ipHG 308 (414)
T cd08190 229 SDIWSLQALRIVGKYLRRAVADPDDLEARSQMHLASTFAGIGFGNAGVHLCHGMSYPIAGLVKDYKAPDYPVDHPLVPHG 308 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhCcchhhhhHhccHhhcCcCccccccccccCCCCChH
Confidence 22222211 223333444443322221 12234456542 23345888888877532 1 139999
Q ss_pred HhhhhhHHHHHH------------HHHHcCCCC---------HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhH
Q 013271 349 EAVAAGMVMAVD------------MSYRLGWID---------DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDK 406 (446)
Q Consensus 349 eaVAig~~~~~~------------la~~~g~~~---------~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dk 406 (446)
+++|+.++..++ +++.+|.-. .+.++++.+|++++|+|+++.+. ++++++.......-
T Consensus 309 ~~~ai~lp~vl~~n~~~~~~k~~~~a~~lg~~~~~~~~~~~~~~~i~~i~~l~~~lglP~~L~e~Gv~~~~~~~ia~~a~ 388 (414)
T cd08190 309 LSVVVTAPAVFRFTAPACPERHLEAAEILGADTSNAKIEDAGEVLADALRKLMRDLGVPDGLAALGYTESDIPALVKGTL 388 (414)
T ss_pred HHHHHHHHHHHHhhhhhCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHH
Confidence 999999987654 344555321 12378999999999999999876 88888755544332
Q ss_pred hhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 407 KVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 407 k~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
+ +.+ +. . +.+ ..++++++.+.|++
T Consensus 389 ~--~~~--~~--~---~np---~~~t~~~i~~il~~ 412 (414)
T cd08190 389 P--QQR--VL--K---LAP---RPVDEEDLAALFEE 412 (414)
T ss_pred h--ccc--cc--c---CCC---CCCCHHHHHHHHHH
Confidence 2 111 00 0 111 47788999888875
No 39
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=100.00 E-value=2.1e-38 Score=326.37 Aligned_cols=319 Identities=19% Similarity=0.221 Sum_probs=231.2
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 168 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~ 168 (446)
.|++|+||+|++++ +++++++ ++|++||||+...+. +.+++.+.|++.|+ ++.+|++.++||+.++|++++
T Consensus 6 ~p~~i~~G~g~~~~l~~~~~~~--~~r~livt~~~~~~~~~~~~~v~~~L~~~g~----~~~~~~~v~~~p~~~~v~~~~ 79 (382)
T cd08187 6 NPTKIIFGKGTESELGKELKKY--GKKVLLVYGGGSIKKNGLYDRVIASLKEAGI----EVVELGGVEPNPRLETVREGI 79 (382)
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCC----eEEEECCccCCCCHHHHHHHH
Confidence 56899999999999 9988875 699999999877654 67999999999884 346788899999999999999
Q ss_pred HHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh----------------cCCCeEEEEcCCcCccccccccCeEEEeeCC
Q 013271 169 DKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHRL 232 (446)
Q Consensus 169 ~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~----------------~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~ 232 (446)
+.++++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||++++.++++.+.
T Consensus 80 ~~~~~~~~D---~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT--agTGsE~t~~avi~~~~ 154 (382)
T cd08187 80 ELCKEEKVD---FILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL--AATGSEMNGGAVITNEE 154 (382)
T ss_pred HHHHHcCCC---EEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC--CchhhccCCCEEEeccc
Confidence 999999999 999999999999999998753 357999999999 78999999999987653
Q ss_pred --cccccc-cccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHH-HhhhhHhhcCCH-HHHHHHHHHHHH
Q 013271 233 --GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ-EQNMHKLMARDP-RAFAYAIKRSCE 307 (446)
Q Consensus 233 --~K~~ig-~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l-~~~~~~~~~~~~-~~l~~~i~~s~~ 307 (446)
.|..+. ....|+.+|+||+++.++|++++++|++|+|.|++ |.|++.. .....+.++... +.+.+.+.+++.
T Consensus 155 ~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~aatg~Dal~h~~---E~~~s~~~~~~~~~~~a~~a~~li~~~l~~a~~ 231 (382)
T cd08187 155 TKEKLGFGSPLLRPKFSILDPELTYTLPKYQTANGIVDIFSHVM---EQYFTYPVDADLQDRLAEGLLKTVIENGPKALK 231 (382)
T ss_pred cCccccccCCCcCceEEEEChHHhccCCHHHHHHHHHHHHHHHH---HHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 354343 44599999999999999999999999999999999 7776543 122233322211 223334444444
Q ss_pred hhHhHhhc-----chhhhhhHh-h-----cCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH------------HHH-
Q 013271 308 NKAEVVSL-----DEKESGLRA-T-----LNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSY- 363 (446)
Q Consensus 308 ~~~~~v~~-----d~~~~G~r~-~-----l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~------------la~- 363 (446)
+..+.-.+ ....+|+.. . .+..|.++|+++.. + +++||+++|+.++..++ ++.
T Consensus 232 ~~~~~~ar~~l~~as~lag~a~~~~g~~~~~~~Hal~~~l~~~--~-~i~HG~~~ai~lp~v~~~n~~~~~~~~~~la~~ 308 (382)
T cd08187 232 NPEDYEARANIMWAATLALNGLIGVGRPQDWATHMIEHELSAL--Y-DIAHGAGLAIVTPAWMRYVYKEKPAKFAQFAKR 308 (382)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCCCcccchhccHhhcC--c-CCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 32222111 122233321 1 12348889988875 4 79999999999886553 232
Q ss_pred HcCCC----C----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHH
Q 013271 364 RLGWI----D----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRK 434 (446)
Q Consensus 364 ~~g~~----~----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~ 434 (446)
.+|.. + ++.++++.++++++|+|+++.+. ++++++.+......+. ..... . | ..++++
T Consensus 309 ~~g~~~~~~~~~~~~~~~~~i~~l~~~lglP~~L~~~gv~~~~l~~~a~~a~~~--~~~~~-n---P-------~~~t~~ 375 (382)
T cd08187 309 VWGIEPEGDDEETALEGIEATEEFFKSLGLPTTLSELGIGEEDIDEMAEKATAN--GGLGG-G---F-------KKLTKE 375 (382)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHHHhc--CcccC-C---C-------CCCCHH
Confidence 12321 1 23578899999999999999875 8888876555444332 11100 0 1 366788
Q ss_pred HHHHHH
Q 013271 435 ALDDTL 440 (446)
Q Consensus 435 ~l~~~l 440 (446)
++++.+
T Consensus 376 ~i~~i~ 381 (382)
T cd08187 376 DIREIL 381 (382)
T ss_pred HHHHHh
Confidence 887765
No 40
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=100.00 E-value=1.5e-38 Score=327.84 Aligned_cols=295 Identities=19% Similarity=0.238 Sum_probs=219.8
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
|.+|+||+|++++ +++++.+ ++|++||||+.+.+. +.+++.+.|++.|+ + +.+|++.+++|+.+.+.+.++.
T Consensus 1 p~~i~fG~g~l~~l~~~~~~~--g~~~livt~~~~~~~~~~~~v~~~L~~~~~--~--~~~f~~v~~~~~~~~v~~~~~~ 74 (386)
T cd08191 1 PGTLLFGAGQRRQLPRLAARL--GSRALIVTDERMAGTPVFAELVQALAAAGV--E--VEVFDGVLPDLPRSELCDAASA 74 (386)
T ss_pred CCeEEECcCHHHHHHHHHHHc--CCeEEEEECcchhhcchHHHHHHHHHHcCC--e--EEEECCCCCCcCHHHHHHHHHH
Confidence 4678999999999 8888875 489999999998874 88999999999884 3 4567888878888889999999
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhhcC----------------CCeEEEEcCCcCccccccccCeEEEeeCC--
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLR----------------GVSFIQIPTTVMAQVDSSVGGKTGINHRL-- 232 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~----------------g~p~i~IPTTl~A~tds~v~~k~~i~~~~-- 232 (446)
++++++| +||||||||++|+||++|..+.+ ++|+|+|||| ++|||++++.+++..+.
T Consensus 75 ~~~~~~D---~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt--agTGSE~t~~avi~~~~~~ 149 (386)
T cd08191 75 AARAGPD---VIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT--AGTGSEVTPVAVLTDPDNA 149 (386)
T ss_pred HHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC--CcchhhhCCeEEEEeCCCC
Confidence 9999999 99999999999999999976633 7899999999 78999999999987653
Q ss_pred ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHH---------------hhhhHhhcCCH-
Q 013271 233 GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQE---------------QNMHKLMARDP- 295 (446)
Q Consensus 233 ~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~---------------~~~~~~~~~~~- 295 (446)
.|..+ ..+..|+.+|+||+++.++|++++++|++|+|+|++ |.|++... +...+.++...
T Consensus 150 ~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~h~i---Ea~~s~~~~~~~~~~~~~~~~~~~p~sd~~a~~a~ 226 (386)
T cd08191 150 MKVGVASPHLRPAIAIIDPELTLTCPPGVTADSGADALTHAI---ESFTAMDRNPFPDGDADHVYSGKNALTDLFAREAI 226 (386)
T ss_pred ceEEEeCCCcccCEEEECHHHhcCCCHHHHHHHHHHHHHHHH---HHHhCCCccccccccccccccCCCHHHHHHHHHHH
Confidence 35444 345689999999999999999999999999999999 77765421 11222222111
Q ss_pred HHHHHHHHHHHHhhHhHhhc-----chhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH-------
Q 013271 296 RAFAYAIKRSCENKAEVVSL-----DEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------- 360 (446)
Q Consensus 296 ~~l~~~i~~s~~~~~~~v~~-----d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~------- 360 (446)
+.+.+.+.+++.+..+...+ ....+|+.. .++..|.++|+|... + +++||+++|+.++.+++
T Consensus 227 ~li~~~l~~a~~~~~~~~ar~~~~~as~laG~a~~~~~~g~~Hal~~~l~~~--~-~i~HG~~~aillp~v~~~n~~~~~ 303 (386)
T cd08191 227 RLIGRSLPRAVRDGDDLEARTDMMLAALLAGLAFGTAGTAAVHALQYPVGAL--T-HTSHGFGVAALLPYVMRFNLPARR 303 (386)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhhhcC--c-CCChHHHHHHHhHHHHHHhhhhhH
Confidence 22334444444443222221 223345431 233447777777664 4 79999999999887653
Q ss_pred -----HHHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHH
Q 013271 361 -----MSYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAV 404 (446)
Q Consensus 361 -----la~~~g~~----~-----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~ 404 (446)
++..+|.- + .+.++++.+|++++|+|+++.+. ++.+++.+....
T Consensus 304 ~k~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lglP~~L~e~gv~~~~~~~~a~~ 362 (386)
T cd08191 304 EEFAEIGRVLGVAAGDHSADEQAAAAITRVEALLAAIGIPTTLAALGVTEADLDGVAAQ 362 (386)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHH
Confidence 33444432 1 23678999999999999999886 888887655443
No 41
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=100.00 E-value=1.2e-38 Score=322.27 Aligned_cols=277 Identities=21% Similarity=0.303 Sum_probs=211.9
Q ss_pred CceeEEEccCcCCChhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 92 ~~~~I~~G~g~~~~~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
.|.+|+||+|++++ +... .++|++||+|+.+.+. +.+++.+.|++. + .+.+|++.++||++++++++++.
T Consensus 3 ~p~~i~~G~g~~~~---l~~~-~~~~~lvv~~~~~~~~g~~~~v~~~l~~~-~----~~~~~~~v~~~p~~~~v~~~~~~ 73 (332)
T cd08180 3 IKTKIYFGEDALER---LKEL-KNKRVLIVTDPFMVKSGMLDKVTDHLDSS-I----EVEIFSDVVPDPPIEVVAKGIKK 73 (332)
T ss_pred CCCeEEECcCHHHH---HHHh-CCCeEEEEeCchhhhCccHHHHHHHHHhc-C----cEEEeCCCCCCcCHHHHHHHHHH
Confidence 46789999999876 3333 3589999999999887 889999999875 4 23567888899999999999999
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHh-----hcCCCeEEEEcCCcCccccccccCeEEEeeCC--cccc-cccccC
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAAS-----YLRGVSFIQIPTTVMAQVDSSVGGKTGINHRL--GKNL-IGAFYQ 242 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~-----~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~--~K~~-ig~~~~ 242 (446)
++++++| +||||||||++|+||++|.. +.+++|+|+|||| ++|||+++..++++.+. .|.. .+.+..
T Consensus 74 ~~~~~~d---~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt--agtgse~t~~avi~~~~~~~k~~~~~~~~~ 148 (332)
T cd08180 74 FLDFKPD---IVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT--SGTGSEVTSFAVITDPETGVKYPLVDDELL 148 (332)
T ss_pred HHhcCCC---EEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCC--CcchHhhCCeEEEEecCCCeeEEeeCCCcc
Confidence 9999999 99999999999999998764 4567999999999 68999999999988653 2433 345689
Q ss_pred ceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhhHhHh-----hcc
Q 013271 243 PQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENKAEVV-----SLD 316 (446)
Q Consensus 243 P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~~~~v-----~~d 316 (446)
|+.+|+||+++.++|++++++|++|+++|++ |.|++.......+.++... +.+.+.+.+++.+..+.. ...
T Consensus 149 p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~---E~~~s~~~~~~s~~~a~~a~~~l~~~l~~a~~~~~~~~ar~~l~~a 225 (332)
T cd08180 149 PDIAILDPELVKTVPPAVTADTGMDVLTHAL---EAYVSTDANDFTDALAEKAIKLVFEYLPKAYKDGDDLEAREKMHNA 225 (332)
T ss_pred CCEEEECchhhccCCHHHHHHhHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999 7777543333333332221 233344444444322211 112
Q ss_pred hhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-
Q 013271 317 EKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT- 392 (446)
Q Consensus 317 ~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~- 392 (446)
...+|+.. .++..|.++|+|+.. + +++||+++|+.++..++. .++++.+|++++|+|+++.+.
T Consensus 226 s~laG~a~~~~g~g~~Hal~~~l~~~--~-~i~HG~~~ai~lp~~l~~----------~~~~i~~l~~~lglp~~L~~~g 292 (332)
T cd08180 226 SCMAGMAFNNAGLGINHSLAHALGGK--F-HIPHGRANAILLPYVIEF----------LIEAIKQLKKKLNIPETLKELG 292 (332)
T ss_pred HHHHHHHHhCccchhhhhhhhhhhcC--C-CCChHHHHHHHHHHHHHH----------HHHHHHHHHHHcCCCCCHHHcC
Confidence 23455542 234458888888765 4 799999999888877665 478999999999999999875
Q ss_pred CCHHHH
Q 013271 393 MTVEMF 398 (446)
Q Consensus 393 i~~e~~ 398 (446)
++++++
T Consensus 293 i~~~~~ 298 (332)
T cd08180 293 VDKEEF 298 (332)
T ss_pred CCHHHH
Confidence 777764
No 42
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=100.00 E-value=2.4e-38 Score=325.05 Aligned_cols=314 Identities=21% Similarity=0.236 Sum_probs=227.0
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
|.+|+||+|++++ +++++++ ++|++||||+++. +.+++.+.|++.|+ ++ .+|+ ..+||+.+.|+++++.+
T Consensus 1 P~~i~~G~g~~~~l~~~l~~~--~~r~livtd~~~~--~~~~v~~~L~~~g~--~~--~~~~-~~~~p~~~~v~~~~~~~ 71 (374)
T cd08183 1 PPRIHFGRGVAKELPALAAEL--GRRVLLVTGASSL--RAAWLIEALRAAGI--EV--THVV-VAGEPSVELVDAAVAEA 71 (374)
T ss_pred CCeEEECcCHHHHHHHHHHHc--CCcEEEEECCchH--HHHHHHHHHHHcCC--eE--EEec-CCCCcCHHHHHHHHHHH
Confidence 4678999999999 9999874 6999999999887 78899999999884 33 3444 55689999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhh--------------------cCCCeEEEEcCCcCccccccccCeEEEeeC
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHR 231 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~--------------------~~g~p~i~IPTTl~A~tds~v~~k~~i~~~ 231 (446)
+++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||+++..+++..+
T Consensus 72 ~~~~~D---~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt--agTGSE~t~~avi~~~ 146 (374)
T cd08183 72 RNAGCD---VVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTT--AGTGSEVTKNAVISVP 146 (374)
T ss_pred HhcCCC---EEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCC--CchhHHhCCeEEEEec
Confidence 999999 999999999999999998753 146899999999 7899999999998765
Q ss_pred --Cccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHH
Q 013271 232 --LGKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCE 307 (446)
Q Consensus 232 --~~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~ 307 (446)
+.|..+ ..+..|+.+|+||+++.++|++++++|++|+|.|++ |.|++...+..++.++... +.+.+.+.+++.
T Consensus 147 ~~~~K~~~~~~~~~P~~ai~Dp~l~~~lP~~~~aatg~Dal~ha~---E~~~s~~~~p~sd~~a~~ai~~i~~~l~~a~~ 223 (374)
T cd08183 147 GAGFKVSLRHPRMLPDVAIVDPELTLSCPRSVTAASGLDALTQLL---EPYLSPRANPLTDALCRSGLPRGARALRRACE 223 (374)
T ss_pred CCCeeEEeecccccCCEEEEChHHhcCCChhhHHHHHHHHHHHHH---HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 335544 455699999999999999999999999999999999 7877643333333332221 223344444444
Q ss_pred hhHhHhh-----cchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHH----------------
Q 013271 308 NKAEVVS-----LDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSY---------------- 363 (446)
Q Consensus 308 ~~~~~v~-----~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~---------------- 363 (446)
+..+... .....+|+.. .++..|.++|+++.. | +++||+++|+.++..++...
T Consensus 224 ~~~~~~ar~~~~~as~laG~a~~~~g~g~~Hai~h~lg~~--~-~i~HG~a~ai~lp~vl~~~~~~~~~~~~~~~~~~~~ 300 (374)
T cd08183 224 NGEDAAARDDMALASLLGGIALANAGLGAVHGLAGPIGGL--F-DAPHGAICATLLPPVLAANIRALRQRGPGNPALAAY 300 (374)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhchhhcC--C-CCChHHHHHHHHHHHHHHhhhhCchhhhhhhhHHHH
Confidence 4322221 1233455542 123447777777664 4 89999999999987664321
Q ss_pred -----HcCCCC----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCH
Q 013271 364 -----RLGWID----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDR 433 (446)
Q Consensus 364 -----~~g~~~----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~ 433 (446)
.+|..+ ++.++++.+|++++|+| ++++. ++++++........+ +..+ . +. -..+++
T Consensus 301 ~~~~~~~~~~~~~~a~~~~~~l~~l~~~lglP-~L~e~gv~~~~~~~ia~~a~~--~~~~-----~---~~---p~~~t~ 366 (374)
T cd08183 301 REVAGLLTGNLEAAADDLVEWLEHWVDELGLP-RLSDYGLTPDDLDAVVEAAAG--SSSM-----K---GN---PVPLSD 366 (374)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHcCCC-ChhhcCCCHHHHHHHHHHHHh--Cccc-----c---CC---CCCCCH
Confidence 112111 24678899999999999 99886 888887554433222 1110 0 11 146788
Q ss_pred HHHHHHH
Q 013271 434 KALDDTL 440 (446)
Q Consensus 434 ~~l~~~l 440 (446)
+++.+.+
T Consensus 367 ~~i~~i~ 373 (374)
T cd08183 367 AELLEIL 373 (374)
T ss_pred HHHHHHh
Confidence 8888776
No 43
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=100.00 E-value=2.4e-38 Score=325.11 Aligned_cols=320 Identities=19% Similarity=0.224 Sum_probs=229.3
Q ss_pred CceeEEEccCcCCChhHhhhcCCCCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~~~~~~l~~~~~~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.|.+|+||+|++++ +.+. .++|++||||+.+.+. +.+++.+.|++.|+ ++.+|+++++||+.++++++++
T Consensus 4 ~p~~i~~G~g~l~~---l~~~-~~~r~livt~~~~~~~~g~~~~v~~~L~~~g~----~~~~~~~v~~~p~~~~v~~~~~ 75 (375)
T cd08179 4 LPRDIYFGKGSLEY---LKTL-KGKKAFIVTGGGSMKKFGFLDKVEAYLKEAGI----EVEVFEGVEPDPSVETVLKGAE 75 (375)
T ss_pred CCceEEECcCHHHH---HHHh-cCCeEEEEeCchHHHhCChHHHHHHHHHHcCC----eEEEeCCCCCCcCHHHHHHHHH
Confidence 46889999999887 2222 3589999999987664 78999999998884 3467888999999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhh-------------------cCCCeEEEEcCCcCccccccccCeEEEee
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASY-------------------LRGVSFIQIPTTVMAQVDSSVGGKTGINH 230 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~-------------------~~g~p~i~IPTTl~A~tds~v~~k~~i~~ 230 (446)
.++++++| +||||||||++|+||++|..+ .+.+|+|+|||| ++|||++++.+++..
T Consensus 76 ~~~~~~~D---~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTt--agTGSE~t~~avi~~ 150 (375)
T cd08179 76 AMREFEPD---WIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPST--SGTATEVTAFSVITD 150 (375)
T ss_pred HHHhcCCC---EEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCC--CchhHhhCCeEEEEe
Confidence 99999999 999999999999999998532 235799999999 789999999999876
Q ss_pred CCc--cccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHH
Q 013271 231 RLG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSC 306 (446)
Q Consensus 231 ~~~--K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~ 306 (446)
+.. |..+ .....|+.+|+||+++.++|++++++|++|+|.|++ |.|++.......+.++... +.+.+.+.+++
T Consensus 151 ~~~~~K~~~~~~~~~P~~ai~Dp~l~~~~P~~~~a~tg~Dal~ha~---E~y~s~~~~~~s~~~a~~ai~~i~~~l~~a~ 227 (375)
T cd08179 151 YEKGIKYPLADFEITPDVAIVDPELTETMPPKLTAETGMDALTHAI---EAYVSTAANDFTDPLALHAIEMIFENLPKSY 227 (375)
T ss_pred CCCCeEEEecCCcccCCEEEEChhhhcCCCHHHHHHHHHHHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 4433 445799999999999999999999999999999999 7777643323333332221 23334444444
Q ss_pred HhhHhHh-----hcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcC------------
Q 013271 307 ENKAEVV-----SLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLG------------ 366 (446)
Q Consensus 307 ~~~~~~v-----~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g------------ 366 (446)
.+. +.- ......+|+.. .++..|.++|+|+.. + +++||+++|+.++..+++.....
T Consensus 228 ~~~-d~~ar~~l~~as~laG~a~~~~g~g~~Hai~h~lg~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~~i~~~ 303 (375)
T cd08179 228 EGD-DKEAREKMHNAQCMAGMAFSNALLGIVHSMAHKTGAE--F-GVPHGLANAIYLPYVIQFNSKDAEAKKRYAGLAKE 303 (375)
T ss_pred hCC-CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhccC--C-CCChHHHHHHHHHHHHHHhcccCccHHHHHHHHHH
Confidence 433 221 11233455542 234458888888765 4 79999999999987765432111
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHH---HHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 367 WIDDSIVKRVHNILQQAKLPTAPPDT-MTVEMFK---SIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 367 ~~~~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~---~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
...++.++++.+|++++|+|+++.+. ++++++. +.+...... +... .+. -..++++++.+.+++
T Consensus 304 ~~~~~~~~~i~~l~~~lglp~~L~~~gi~~~~~~~~~~~~a~~a~~-~~~~--------~~~---p~~~t~~~i~~il~~ 371 (375)
T cd08179 304 EGVEDLIEAVRELNKKLGIPACFKEYGIDEQEFLEKLDELAENAIK-DACT--------GTN---PRQPTKEEMKKLLKC 371 (375)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHhhHHHHHHHHHh-CcCC--------CCC---CCCCCHHHHHHHHHH
Confidence 00135688999999999999999875 7776642 223322211 1110 111 147889999988875
Q ss_pred H
Q 013271 443 F 443 (446)
Q Consensus 443 ~ 443 (446)
.
T Consensus 372 ~ 372 (375)
T cd08179 372 V 372 (375)
T ss_pred H
Confidence 3
No 44
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=100.00 E-value=2.7e-38 Score=324.16 Aligned_cols=297 Identities=21% Similarity=0.278 Sum_probs=221.2
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchh-HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~-~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
|.+|+||+|++++ +++++++ +.+|++||+|+.+.+ .+.+++.+.|++.++ .+.+|.+.++||++++|+++++.
T Consensus 1 P~~i~~G~g~l~~l~~~l~~~-~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~----~~~~~~~~~~~p~~~~v~~~~~~ 75 (370)
T cd08551 1 PTRIIFGAGAIEKLGEEIKNL-GGRKALIVTDPGLVKTGVLDKVIDSLKEAGI----EVVIFDGVEPNPTLSNVDAAVAA 75 (370)
T ss_pred CCeEEECcCHHHHHHHHHHHc-CCCeEEEEeCcchhhCccHHHHHHHHHHcCC----eEEEECCCCCCCCHHHHHHHHHH
Confidence 4678999999999 9988875 468999999999988 589999999998874 34567888999999999999999
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhh----------------cCCCeEEEEcCCcCccccccccCeEEEeeC--C
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHR--L 232 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~----------------~~g~p~i~IPTTl~A~tds~v~~k~~i~~~--~ 232 (446)
++++++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||++++.+++..+ +
T Consensus 76 ~~~~~~d---~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt--~gtgse~t~~avi~d~~~~ 150 (370)
T cd08551 76 YREEGCD---GVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTT--AGTGSEVTPFAVITDEETG 150 (370)
T ss_pred HHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCC--CcchhhcCCeEEEEECCCC
Confidence 9999999 999999999999999999876 358999999999 7799999999998765 3
Q ss_pred ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCC-HHHHHHHHHHHHHhhH
Q 013271 233 GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD-PRAFAYAIKRSCENKA 310 (446)
Q Consensus 233 ~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~-~~~l~~~i~~s~~~~~ 310 (446)
.|..+ .....|..+|+||+++.++|++++++|++|++.|++ |.|+........+.++.. .+.+.+.+.+++.+..
T Consensus 151 ~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~a~~~Dal~h~~---E~~~s~~~~~~s~~~a~~~~~~~~~~l~~~~~~~~ 227 (370)
T cd08551 151 EKYGIASPELLPDVAILDPELTYTLPPALTAATGMDALTHAI---EAYVSRKANPISDALAIKAIRLIAKNLPKAVKEGG 227 (370)
T ss_pred eeEEEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45444 345699999999999999999999999999999999 777653222222222111 1222333333333221
Q ss_pred hH-----hhcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHH------------HHHcCCC--
Q 013271 311 EV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLGWI-- 368 (446)
Q Consensus 311 ~~-----v~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~l------------a~~~g~~-- 368 (446)
+. +......+|+.. .++..|.|+|+|+.. + +++||+++|+.++..+++ +..++.+
T Consensus 228 ~~~ar~~l~~as~laG~a~~~~~~g~~H~i~~~l~~~--~-~i~HG~~~ai~lp~~l~~~~~~~~~~~~~l~~~~~~~~~ 304 (370)
T cd08551 228 DLEAREKMALASTLAGMAFSNAGLGAVHAMAHPLGAL--Y-HIPHGLANAILLPHVMRFNAEAIPEKYADIARAMGKVSG 304 (370)
T ss_pred CHHHHHHHHHHHHHHHHHHhCcchHHHHHHhhHHhhC--C-CCcHHHHHHHHHHHHHHhccccCHHHHHHHHHHhCCcCC
Confidence 11 111223345432 123347777777654 4 799999999998877643 2333211
Q ss_pred ------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHh
Q 013271 369 ------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVD 405 (446)
Q Consensus 369 ------~~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~d 405 (446)
.++.++++.+|++++|+|+++.+. ++.+++.......
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~lglp~~L~e~gi~~~~~~~ia~~a 348 (370)
T cd08551 305 GSDDEAANAAIAAIRKLNKELGIPTSLADLGVKEEDIDKLAELA 348 (370)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHH
Confidence 134588999999999999999875 8888876665543
No 45
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=100.00 E-value=4.5e-38 Score=319.99 Aligned_cols=314 Identities=20% Similarity=0.253 Sum_probs=222.0
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
|.+|+||+|++++ +++++++ ++|++||+|+++++.+.+++.+.|++.+ +.+.+|+ ++ |+++.++++++.+
T Consensus 2 p~~i~~G~g~l~~l~~~~~~~--~~~~liv~d~~~~~~~~~~l~~~L~~~~----~~~~~~~-~~--p~~~~v~~~~~~~ 72 (347)
T cd08172 2 PGRYISGEGALDELGELLKRF--GKRPLIVTGPRSWAAAKPYLPESLAAGE----AFVLRYD-GE--CSEENIERLAAQA 72 (347)
T ss_pred CCeEEeCcCHHHHHHHHHHHh--CCeEEEEECHHHHHHHHHHHHHHHhcCe----EEEEEeC-CC--CCHHHHHHHHHHH
Confidence 5788999999999 9999875 6999999999998889999999996654 3444554 44 8999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcc-c-ccccccCceEEEEe
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGK-N-LIGAFYQPQCVLVD 249 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K-~-~ig~~~~P~~viiD 249 (446)
+++++| +||||||||++|+||++|..+ ++|+|+|||| +++||++++.++++...++ + .......|+.+|+|
T Consensus 73 ~~~~~D---~iIavGGGs~~D~aK~ia~~~--~~p~i~VPTT--~gtgse~t~~avi~~~~~~~k~~~~~~~~P~~vi~D 145 (347)
T cd08172 73 KENGAD---VIIGIGGGKVLDTAKAVADRL--GVPVITVPTL--AATCAAWTPLSVIYDEDGAFLRVEYLKRAPELVLVD 145 (347)
T ss_pred HhcCCC---EEEEeCCcHHHHHHHHHHHHh--CCCEEEecCc--cccCcccceeEEEEcCCCcEeeeccccCCCCEEEEC
Confidence 999999 999999999999999998765 8999999999 6789999988888765432 2 22223589999999
Q ss_pred hHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHH---hhhhHhhcCC-HHHHHHHH----HHHHHhhHhH---------
Q 013271 250 TDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQE---QNMHKLMARD-PRAFAYAI----KRSCENKAEV--------- 312 (446)
Q Consensus 250 p~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~---~~~~~~~~~~-~~~l~~~i----~~s~~~~~~~--------- 312 (446)
|+++.++|++++++|++|+|.|++ |.|+.... ....+.++.. .+.+.+.+ .+++++..+.
T Consensus 146 p~l~~tlP~~~~~sg~~Dal~h~~---E~~~s~~~~~~~~~~~~~a~~~~~~~~~~L~~~~~~a~~~~~~~~~~~a~~~~ 222 (347)
T cd08172 146 PDLIANSPVRYLVAGIGDTLAKWY---EASAISRSLDSLDLFVQLALQAAKLCRDLLLRDSEQALQDMAAGEVTPAFEDV 222 (347)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHH---HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999 77775332 1111111111 01111222 2233222211
Q ss_pred ----hhcchhhhhhH---hhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 013271 313 ----VSLDEKESGLR---ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKL 385 (446)
Q Consensus 313 ----v~~d~~~~G~r---~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGl 385 (446)
+......+|+. ..++.+|.++|+++......+++||++||++++....+.. .++.++++.+|++++|+
T Consensus 223 ~r~~~~~a~~~ag~~~~~~~~g~~H~l~~~l~~~~~~~~~~HG~~~a~~l~~~~~~~~-----~~~~~~~i~~l~~~lgl 297 (347)
T cd08172 223 VDTIIALAGLVGGFGDEYGRTAGAHAVHNGLTLLPETHDWLHGEKVAYGILVQLALEG-----REAEIEELLPFYRELGL 297 (347)
T ss_pred HHHHHHHhcccccccccCCchHHHHHHHHHhhcCccccccCcchHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCC
Confidence 00001111221 1245569999989876321379999999999998776532 25779999999999999
Q ss_pred CCCCCCC-C---CHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 386 PTAPPDT-M---TVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 386 P~~~~~~-i---~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
|+++++. + +++++........+ ++...... | ..++++++++++++
T Consensus 298 p~~l~~~g~~~~~~~~i~~ia~~a~~--~~~~~~~~---p-------~~~~~~~i~~i~~~ 346 (347)
T cd08172 298 PLSLAELGLLDPTDEELQKVAAFAAS--PKETIHLL---P-------FPVTAEQLRQAIKK 346 (347)
T ss_pred CCCHHHhCCCCCCHHHHHHHHHHHcC--CcchhhcC---C-------CCCCHHHHHHHHHh
Confidence 9998874 4 45665544433221 11100001 1 36788899888865
No 46
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=100.00 E-value=5.7e-38 Score=319.46 Aligned_cols=314 Identities=21% Similarity=0.225 Sum_probs=220.4
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
|.+++||+|++++ +++++++ ++|++||+|+++.+.+.+++.+.|++.++ .+.+++|+ + +|+.++|+++++.+
T Consensus 1 p~~i~~G~g~~~~l~~~~~~~--g~~~liv~~~~~~~~~~~~v~~~l~~~~i--~~~~~~~~-~--~p~~~~v~~~~~~~ 73 (349)
T cd08550 1 PARYVCGDNAIKEIAAILSTF--GSKVAVVGGKTVLKKSRPRFEAALAKSII--VVDVIVFG-G--ECSTEEVVKALCGA 73 (349)
T ss_pred CCeEEECcCHHHHHHHHHHHc--CCeEEEEEChHHHHHHHHHHHHHHHhcCC--eeEEEEcC-C--CCCHHHHHHHHHHH
Confidence 3678999999999 9999874 48999999999988889999999999885 34445553 4 56899999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCc--ccccccccCceEEEEe
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLG--KNLIGAFYQPQCVLVD 249 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~--K~~ig~~~~P~~viiD 249 (446)
+++++| +||||||||++|+||++| +.+++|+|+|||| ++|||++++.+++..+.+ |..+.....|+.+|+|
T Consensus 74 ~~~~~d---~IIavGGGs~~D~aK~ia--~~~~~p~i~VPTt--agtgse~t~~avi~~~~~~~k~~~~~~~~P~~~i~D 146 (349)
T cd08550 74 EEQEAD---VIIGVGGGKTLDTAKAVA--DRLDKPIVIVPTI--ASTCAASSNLSVIYSDDGEFARYDFQKRNPDLVLVD 146 (349)
T ss_pred HhcCCC---EEEEecCcHHHHHHHHHH--HHcCCCEEEeCCc--cccCccccceEEEEcCCCceeeeeecCCCCCEEEEC
Confidence 999999 999999999999999996 4578999999999 789999999988876543 2222223589999999
Q ss_pred hHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHh----hhhHhhcCCHHHHHHHHHHHH--------HhhHh------
Q 013271 250 TDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQ----NMHKLMARDPRAFAYAIKRSC--------ENKAE------ 311 (446)
Q Consensus 250 p~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~----~~~~~~~~~~~~l~~~i~~s~--------~~~~~------ 311 (446)
|+++.++|++++++|++|+|.|++ |.|++.... ...+.++ ..+.+.+.+.+ .+..+
T Consensus 147 p~l~~t~P~~~~a~g~~Dal~h~~---E~~~s~~~~~~~~~~~~~~a---~~~~~~~~~~l~~~~~~a~~~~~~~~~~~a 220 (349)
T cd08550 147 TEVIAQSPAEYLWSGIADALAKWY---EAEAVIRGREMNGSLAPLMA---LAVAEACTPTLLEYGVLAVESMEAKRVTQA 220 (349)
T ss_pred hHHHHhCCHHHHHHhHHHHHHHHH---HHHHHhhcccccccchhHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999 777654321 1111111 11222222222 11100
Q ss_pred ---HhhcchhhhhhHh-------hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 013271 312 ---VVSLDEKESGLRA-------TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQ 381 (446)
Q Consensus 312 ---~v~~d~~~~G~r~-------~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~ 381 (446)
+.......+|+.. .++..|.++|+++...+..+++||++||+++...+.+. + ..++.++++.+|++
T Consensus 221 ~~~~~~a~~~~ag~~~~~~~~~~~~~~~Hai~~~l~~~~~~~~~~HG~~~a~~~~~~~~~~---~-~~~~~~~~~~~l~~ 296 (349)
T cd08550 221 FEEVVEANIMLAGTVFESGVDYYRLAAAHAVHNGLTALEETHKVLHGEKVAYGVLVQLALE---E-DPREEIEELVEFYR 296 (349)
T ss_pred HHHHHHHHHHHhhhhcccCccCCccHHHHHHHHhhhccccccccccccHHHHHHHHHHHHc---C-CCHHHHHHHHHHHH
Confidence 0111112334432 12233556665554322248999999999887665531 1 13467899999999
Q ss_pred HcCCCCCCCCC-C--CHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 382 QAKLPTAPPDT-M--TVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 382 ~lGlP~~~~~~-i--~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
++|+|+++.+. + +++++.+......+ +... .+++ -..++++++.+++.+
T Consensus 297 ~lglP~~L~~~gi~~~~~~i~~ia~~a~~--~~~~--------~~~~--p~~~t~~~i~~~~~~ 348 (349)
T cd08550 297 QLGLPVTLADLGLEFSDEDIKKVASKAPA--TTET--------IHNP--FGDVTEEDVAQAIIA 348 (349)
T ss_pred HCCCCCcHHHcCCCCCHHHHHHHHHHHcC--Ccch--------hhcC--CCCCCHHHHHHHHHh
Confidence 99999999875 7 78887666554322 1110 0110 137788999888753
No 47
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=100.00 E-value=1.1e-37 Score=318.19 Aligned_cols=316 Identities=19% Similarity=0.232 Sum_probs=224.7
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 168 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~ 168 (446)
.|.+|+||+|++++ ++++++. ++|++||||+.+++. +.+++.+.|++.|+ ++.+|++.++||+.+++++++
T Consensus 3 ~p~~i~~G~g~l~~l~~~~~~~--g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~----~~~~~~~v~~~p~~~~v~~~~ 76 (357)
T cd08181 3 MPTKVYFGENCVEKHGEELAAL--GKRALIVTGKSSAKKNGSLDDVTKALEELGI----EYEIFDEVEENPSLETIMEAV 76 (357)
T ss_pred CCCeEEECCCHHHHHHHHHHHc--CCEEEEEeCCchHhhcCcHHHHHHHHHHcCC----eEEEeCCCCCCcCHHHHHHHH
Confidence 46889999999999 8888874 599999999998665 56999999999884 345678899999999999999
Q ss_pred HHHHHcCCCCcceEEEEcCccHHHHHHHHHHh---------------hcCCCeEEEEcCCcCccccccccCeEEEeeC--
Q 013271 169 DKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---------------YLRGVSFIQIPTTVMAQVDSSVGGKTGINHR-- 231 (446)
Q Consensus 169 ~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~---------------~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~-- 231 (446)
+.++++++| +||||||||++|+||++|.. +.+++|+|+|||| ++|||+++..+++..+
T Consensus 77 ~~~~~~~~D---~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt--agTGsE~t~~avi~d~~~ 151 (357)
T cd08181 77 EIAKKFNAD---FVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT--AGTGSEVTQYSVLTDHEE 151 (357)
T ss_pred HHHHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC--CcchhhhCCeEEEEECCC
Confidence 999999999 99999999999999999863 2567999999999 7899999999998765
Q ss_pred Ccccccc-cccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhh
Q 013271 232 LGKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENK 309 (446)
Q Consensus 232 ~~K~~ig-~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~ 309 (446)
+.|..+. ....|+.+|+||+++.++|++++++|++|+|.|++ |.|++...+...+.++... +.+.+.+.+.+.+.
T Consensus 152 ~~K~~i~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~ha~---E~~~s~~~~~~~d~~a~~ai~l~~~~l~~~~~~~ 228 (357)
T cd08181 152 GTKKGFGHDLIFPKLAFLDPKYTLTLPKEVTINTALDALSHAV---EGYLSNKSTPYSDMLAKEALELFKECLPKLLENE 228 (357)
T ss_pred CeeeeccCCccccCEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455443 34699999999999999999999999999999999 7777643333333332211 22333444444432
Q ss_pred HhH-----hhcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHH--------H
Q 013271 310 AEV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSI--------V 373 (446)
Q Consensus 310 ~~~-----v~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~--------~ 373 (446)
.+. +......+|+.. .++..|.++|++... + +++||+++|+.++..++...... .+. .
T Consensus 229 ~~~~ar~~~~~as~laG~a~~~~g~~~~Hal~~~l~~~--~-~~~HG~~~ai~lp~vl~~~~~~~---~~~~~~~~~~g~ 302 (357)
T cd08181 229 LDEEAREKLMLASTLAGMVIAQTGTTLPHGLGYPLTYE--K-GIPHGLANGIFLPEYLELAKEQI---PEKVFILKLLGF 302 (357)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcccchhhHhhcCccccC--C-CCCcHHHHHHHHHHHHHHHhhcC---HHHHHHHHHcCc
Confidence 211 111233455542 123447777776654 4 89999999998887765543211 111 1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHH
Q 013271 374 KRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 440 (446)
Q Consensus 374 ~~i~~ll~~lGlP~~~~~~i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l 440 (446)
+.+.+++++++.|..++..++++++.+.....-+. ... .+++ ..++++++.+.|
T Consensus 303 ~~~~~~~~~~~~~~~l~~gv~~~~~~~~a~~~~~~--~~~--------~~nP---~~~t~~~i~~il 356 (357)
T cd08181 303 GSLDEFLKSLGLLLKVVIKLSDEEIEKWAERALSA--KHK--------ANTP---GEVTEEDIRNIY 356 (357)
T ss_pred HHHHHHHHHHhHHhCCCCCCCHHHHHHHHHHHHhC--cCc--------CCCC---CCCCHHHHHHHh
Confidence 23466777777777665457888875554443221 110 1111 467888888776
No 48
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=100.00 E-value=4.5e-38 Score=320.44 Aligned_cols=317 Identities=19% Similarity=0.195 Sum_probs=221.9
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
|.+|+||+|++++ +++++++ ++|++||||+.+.+.+.+++.+.|++.++ ++.+. ...++|+.++|+++++.+
T Consensus 1 p~~i~~G~g~~~~l~~~~~~~--~~r~livt~~~~~~~~~~~v~~~L~~~~i--~~~~~---~~~~~p~~~~v~~~~~~~ 73 (351)
T cd08170 1 PGRYVQGPGALDELGEYLARL--GKRALIIADEFVLDLVGAKIEESLAAAGI--DARFE---VFGGECTRAEIERLAEIA 73 (351)
T ss_pred CCcEEECCCHHHHHHHHHHHh--CCeEEEEECHHHHHHHHHHHHHHHHhCCC--eEEEE---EeCCcCCHHHHHHHHHHH
Confidence 3578999999999 9999875 59999999999988899999999999885 33222 234578999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCc--ccccccccCceEEEEe
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLG--KNLIGAFYQPQCVLVD 249 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~--K~~ig~~~~P~~viiD 249 (446)
+++++| +||||||||++|+||++|. .+++|+|+|||| ++|||++++.++++.+.. |..+.....|+++|+|
T Consensus 74 ~~~~~D---~IIavGGGS~iD~aK~ia~--~~~~P~iaIPTT--agTgse~t~~avi~~~~~~~k~~~~~~~~P~~ai~D 146 (351)
T cd08170 74 RDNGAD---VVIGIGGGKTLDTAKAVAD--YLGAPVVIVPTI--ASTDAPTSALSVIYTDDGEFEEYLFLPRNPDLVLVD 146 (351)
T ss_pred hhcCCC---EEEEecCchhhHHHHHHHH--HcCCCEEEeCCc--cccCcccccceEEECCCCceeeeeeccCCCCEEEEC
Confidence 999999 9999999999999999975 468999999999 789999999999876543 2222222589999999
Q ss_pred hHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhh----------HhhcCC-HHHHHHHHHHHHHhhH--------
Q 013271 250 TDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMH----------KLMARD-PRAFAYAIKRSCENKA-------- 310 (446)
Q Consensus 250 p~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~----------~~~~~~-~~~l~~~i~~s~~~~~-------- 310 (446)
|+++.++|++++++|++|+|.|++ |.|+........ +.++.. .+.+.+.+.+.+.+..
T Consensus 147 p~l~~t~P~~~~a~~~~Dal~h~~---E~~~s~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~~~ar 223 (351)
T cd08170 147 TDVIAKAPVRFLVAGIGDALATYF---EARACVRSGGPNMFGGKPTLAALALAKLCYETLLEDGVAALAAVERGVVTPAL 223 (351)
T ss_pred hHHHhhCCHHHHHHHHHHHHHHHH---HHHHHHHccCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 999999999999999999999999 777654432211 111100 0111122222211100
Q ss_pred -hHhhcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Q 013271 311 -EVVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLP 386 (446)
Q Consensus 311 -~~v~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP 386 (446)
+++......+|+.. .++..|.++|+|+......+++||++||++......+. ...++.++++.+|++++|+|
T Consensus 224 ~~~~~a~~~laG~a~~~~g~~~~Hai~h~l~~~~~~~~~~HG~~~a~~~~~~~~~~----~~~~~~~~~i~~l~~~lglP 299 (351)
T cd08170 224 ERVVEANTLLSGLGFESGGLAAAHAIHNGLTALPETHHALHGEKVAFGTLVQLVLE----NRPAEEIEEVIDFCRAVGLP 299 (351)
T ss_pred HHHHHHHHHHhhhhhccCCcHHHHHHHHhhhcccccccccccchHHHHHHHHHHhc----CCCHHHHHHHHHHHHHCCCC
Confidence 11111113345432 12334888888887532138999999998776655431 12356789999999999999
Q ss_pred CCCCCC-CC---HHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 387 TAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 387 ~~~~~~-i~---~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
+++++. ++ .+++.+......+ ++ .. .+.+ -..++++++.+++++
T Consensus 300 ~~l~~~gi~~~~~~~~~~~a~~~~~---~~-~~------~~n~--p~~~t~e~i~~i~~~ 347 (351)
T cd08170 300 VTLADLGLEDVTEEELRKVAEAACA---PG-ET------IHNM--PFPVTPEDVYDAILA 347 (351)
T ss_pred CcHHHcCCCCCCHHHHHHHHHHHhC---Ch-hh------hhcC--CCCCCHHHHHHHHHH
Confidence 998874 44 3666554443222 11 00 1110 147789999888865
No 49
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=100.00 E-value=9.5e-38 Score=319.76 Aligned_cols=317 Identities=20% Similarity=0.211 Sum_probs=219.5
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
.|.+|+||+|++++ +++++++ ++|++||||+++++.+.+++.+.|++.++ ++. +...+++|+.++|+++++.
T Consensus 7 ~p~~i~~G~g~~~~l~~~l~~~--g~~~livtd~~~~~~~~~~v~~~l~~~~~--~~~---~~~~~~ep~~~~v~~~~~~ 79 (366)
T PRK09423 7 SPSKYVQGKGALARLGEYLKPL--GKRALVIADEFVLGIVGDRVEASLKEAGL--TVV---FEVFNGECSDNEIDRLVAI 79 (366)
T ss_pred CCceEEECCCHHHHHHHHHHHc--CCEEEEEEChhHHHHHHHHHHHHHHhCCC--eEE---EEEeCCCCCHHHHHHHHHH
Confidence 46789999999999 9988875 49999999999988899999999999884 332 2233457799999999999
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccc--cCceEEEE
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF--YQPQCVLV 248 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~--~~P~~vii 248 (446)
++++++| +||||||||++|+||++| +.+++|+|+|||| ++|||+++++++++.+.+++..+.+ ..|+.+|+
T Consensus 80 ~~~~~~d---~IIavGGGsv~D~aK~iA--~~~~~p~i~IPTt--agtgSe~t~~avi~~~~~~~k~~~~~~~~P~~~i~ 152 (366)
T PRK09423 80 AEENGCD---VVIGIGGGKTLDTAKAVA--DYLGVPVVIVPTI--ASTDAPTSALSVIYTEEGEFERYLFLPKNPDLVLV 152 (366)
T ss_pred HHhcCCC---EEEEecChHHHHHHHHHH--HHcCCCEEEeCCc--cccCccccCceEEECCCCceeeeccccCCCCEEEE
Confidence 9999998 999999999999999996 4579999999999 8899999999999877665533333 37999999
Q ss_pred ehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhh---HhhcCCHH----HHHHHHHHHHH-------hh-----
Q 013271 249 DTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMH---KLMARDPR----AFAYAIKRSCE-------NK----- 309 (446)
Q Consensus 249 Dp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~---~~~~~~~~----~l~~~i~~s~~-------~~----- 309 (446)
||+++.++|++++++|++|+|.|++ |.|++....... +......+ ...+.+.+... +.
T Consensus 153 Dp~l~~tlP~~~~~~g~~Dal~ha~---E~y~s~~~~~~~~~~~~~~~~a~~~a~~~~~~l~~~~~~a~~~~~~~~~~~a 229 (366)
T PRK09423 153 DTAIIAKAPARFLAAGIGDALATWF---EARACSRSGGTTMAGGKPTLAALALAELCYETLLEDGLKAKLAVEAKVVTPA 229 (366)
T ss_pred chHHHHhCCHHHHHHhHHHHHHHHH---HHHHHHhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999 787765322110 00000001 11122222211 10
Q ss_pred -HhHhhcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 013271 310 -AEVVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKL 385 (446)
Q Consensus 310 -~~~v~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGl 385 (446)
.++.......+|+.. .++..|.++|+|+...+..+++||+++|++....... ....++.++++.+|++++|+
T Consensus 230 r~~m~~as~~laG~a~~~~g~g~~Hal~h~l~~~~~~~~~~HG~~~a~~~~~~~~~----~~~~~~~i~~i~~l~~~lgl 305 (366)
T PRK09423 230 LENVIEANTLLSGLGFESGGLAAAHAIHNGLTALEDTHHLTHGEKVAFGTLTQLVL----ENRPKEEIEEVIDFCHAVGL 305 (366)
T ss_pred HHHHHHHHHHHhhhhhccCchHHHHHHHHhhhcchhhhhcccccHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHCCC
Confidence 011111112345532 1233477777777632223899999999875544332 11235778999999999999
Q ss_pred CCCCCCC-C---CHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHH
Q 013271 386 PTAPPDT-M---TVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 441 (446)
Q Consensus 386 P~~~~~~-i---~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~ 441 (446)
|+++.+. + +.+++.+.....- .++.. .++. -..++++++.+.++
T Consensus 306 P~~L~~~gi~~~~~~~~~~ia~~a~--~~~~~--------~~n~--p~~~t~~~i~~il~ 353 (366)
T PRK09423 306 PTTLADLGLKEDSDEELRKVAEAAC--AEGET--------IHNM--PFKVTPEDVAAAIL 353 (366)
T ss_pred CCcHHHcCCCCCCHHHHHHHHHHHh--CCcch--------hhcC--CCCCCHHHHHHHHH
Confidence 9998764 4 3566544433221 11110 0110 13678888877764
No 50
>PRK15138 aldehyde reductase; Provisional
Probab=100.00 E-value=3.8e-37 Score=317.20 Aligned_cols=326 Identities=17% Similarity=0.209 Sum_probs=231.2
Q ss_pred CeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCC
Q 013271 82 PTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENY 158 (446)
Q Consensus 82 ~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~ 158 (446)
|.++.+. .|.+|+||+|++++ +++++. ++|++||||+...+. +.+++.+.|+ ++ ++.+|++.++|
T Consensus 1 m~~f~~~---~P~~i~~G~g~~~~l~~~l~~---~~~~livt~~~~~~~~g~~~~v~~~L~--~~----~~~~f~~v~~~ 68 (387)
T PRK15138 1 MNNFNLH---TPTRILFGKGAIAGLREQIPA---DARVLITYGGGSVKKTGVLDQVLDALK--GM----DVLEFGGIEPN 68 (387)
T ss_pred CCCcEEe---CCceEEECcCHHHHHHHHHhc---CCeEEEECCCchHHhcCcHHHHHHHhc--CC----eEEEECCccCC
Confidence 3345554 46889999999999 888874 489999998765543 6788999996 42 34677888999
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhc-------------------CCCeEEEEcCCcCcccc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-------------------RGVSFIQIPTTVMAQVD 219 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~-------------------~g~p~i~IPTTl~A~td 219 (446)
|++++|+++.+.++++++| +||||||||++|+||++|.... +.+|+|+|||| ++||
T Consensus 69 p~~~~v~~~~~~~~~~~~D---~IIaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTT--aGTG 143 (387)
T PRK15138 69 PTYETLMKAVKLVREEKIT---FLLAVGGGSVLDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTL--PATG 143 (387)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecC--Cccc
Confidence 9999999999999999999 9999999999999999986421 24799999999 7899
Q ss_pred ccccCeEEEeeC--Ccccc-cccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHh-hhhHhhcCCH
Q 013271 220 SSVGGKTGINHR--LGKNL-IGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQ-NMHKLMARDP 295 (446)
Q Consensus 220 s~v~~k~~i~~~--~~K~~-ig~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~-~~~~~~~~~~ 295 (446)
|+++..+++... +.|.. .+....|+.+|+||+++.++|++++++|++|+|.|++ |.|++.... ...+.++...
T Consensus 144 SE~t~~avit~~~~~~K~~~~~~~~~P~~aivDP~l~~~~P~~~taatg~DAl~hai---E~y~s~~~~~~~td~~A~~a 220 (387)
T PRK15138 144 SESNAGAVISRKTTGDKQAFHSPHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTV---EQYVTYPVDAKIQDRFAEGI 220 (387)
T ss_pred cccCCCEEEEecCCCeeeeecCcchheeEEEECcHHhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCChHHHHHHHHH
Confidence 999999998643 33443 3455699999999999999999999999999999999 777753111 1222222111
Q ss_pred -HHHHHHHHHHHHhhHhHhhc-----chhhhhhHh---hcC---cchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHH--
Q 013271 296 -RAFAYAIKRSCENKAEVVSL-----DEKESGLRA---TLN---LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM-- 361 (446)
Q Consensus 296 -~~l~~~i~~s~~~~~~~v~~-----d~~~~G~r~---~l~---~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~l-- 361 (446)
+.+.+.+.+++.+..+...+ ....+|+.. .++ ..|.++|+++.. | +++||.++|+.+|..+++
T Consensus 221 ~~~i~~~l~~a~~~~~~~~aR~~m~~as~lag~a~~~~g~~~~~~~Hal~h~lg~~--~-~i~HG~~~ai~lP~vl~~~~ 297 (387)
T PRK15138 221 LLTLIEEGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM--H-GLDHAQTLAIVLPALWNEKR 297 (387)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhccCCCCCchhhhhcchhhhc--c-CCchHHHHHHHHHHHHHHhh
Confidence 22334444444433222221 222344431 112 238888888875 5 899999999999876542
Q ss_pred ----------HHHcCCC----C----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCC
Q 013271 362 ----------SYRLGWI----D----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPL 422 (446)
Q Consensus 362 ----------a~~~g~~----~----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~i 422 (446)
+..++.. + +..++++.+|++++|+|+++.+. ++++++.+......+ ++.. . .
T Consensus 298 ~~~~~k~~~~a~~~~~~~~~~~~~~~~~~i~~i~~l~~~lg~p~~L~~~gv~~~d~~~~a~~a~~--~~~~--~-----~ 368 (387)
T PRK15138 298 DTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQMGVPTRLSDYGLDGSSIPALLKKLEE--HGMT--Q-----L 368 (387)
T ss_pred hhCHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHHHh--cCcc--c-----C
Confidence 2223111 1 23578899999999999999876 888887665544332 1110 0 0
Q ss_pred CceeEcCCCCHHHHHHHHHH
Q 013271 423 GNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 423 G~~~~~~~~~~~~l~~~l~~ 442 (446)
+++ ..++++++++.|++
T Consensus 369 ~np---~~~~~~~i~~il~~ 385 (387)
T PRK15138 369 GEH---HDITLDVSRRIYEA 385 (387)
T ss_pred CCC---CCCCHHHHHHHHHh
Confidence 111 47789999988864
No 51
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=100.00 E-value=1.2e-36 Score=308.94 Aligned_cols=285 Identities=12% Similarity=0.132 Sum_probs=215.4
Q ss_pred eEEEccCcCCC-hhHhhhcC-CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHH
Q 013271 95 PIYIGSGLLDH-PDLLQKHV-QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAI 172 (446)
Q Consensus 95 ~I~~G~g~~~~-~~~l~~~~-~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~ 172 (446)
+|+||+|++++ +++++..+ ..++++||||+.+.+ +++.+.|++.++ ++.+|.+.++||+.++|+++.+.++
T Consensus 3 ~i~fG~g~l~~l~~~~~~~g~~~~~~lvvtd~~~~~---~~v~~~L~~~g~----~~~~f~~v~~nPt~~~v~~~~~~~~ 75 (347)
T cd08184 3 RYIFGRGSFDQLNDLLAPKRKNKDPAVFFVDDVFQG---KDLISRLPVESE----DMIIWVDATEEPKTDQIDALTAQVK 75 (347)
T ss_pred eEEECcCHHHHHHHHHHHcCCCCCeEEEEECcchhh---hHHHHHHHhcCC----cEEEEcCCCCCcCHHHHHHHHHHHH
Confidence 67999999999 99888752 236788999988875 678888988774 3456678899999999999999999
Q ss_pred Hc---CCCCcceEEEEcCccHHHHHHHHHHhhc----------------CCCeEEEEcCCcCccccccccCeEEEeeCCc
Q 013271 173 ES---RLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGGKTGINHRLG 233 (446)
Q Consensus 173 ~~---~~dr~~~IIAiGGGsv~D~aK~iAa~~~----------------~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~ 233 (446)
++ ++| +||||||||++|+||++|.... ..+|+|+|||| ++|||+++..+++..++.
T Consensus 76 ~~~~~~~D---~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTT--aGTGSE~t~~aVit~~~~ 150 (347)
T cd08184 76 SFDGKLPC---AIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTL--SGTGAEASRTAVLMGPER 150 (347)
T ss_pred hhCCCCCC---EEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCC--CccccccCCcEEEEeCCc
Confidence 88 888 9999999999999999986531 34789999999 789999999999987765
Q ss_pred cccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHH-HHh---
Q 013271 234 KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRS-CEN--- 308 (446)
Q Consensus 234 K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s-~~~--- 308 (446)
|..+ .....|+.+|+||+++.++|+++++++++|++.|++ |.|++...+...+.++. ...+++.+. +..
T Consensus 151 K~~i~~~~~~P~~aIvDp~l~~s~P~~~ta~tGiDal~Hai---Eay~s~~~~p~td~~A~---~ai~li~~~~l~~~~~ 224 (347)
T cd08184 151 KLGMNSDFTMFDQIILDPELTAGVPRDQYFYTGMDCYIHCI---ESLTGTYRNEVSDAYAE---KALELCRQVFLSDDMM 224 (347)
T ss_pred eeeeecCCcCCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHH---HHHHHHHHhhhccccC
Confidence 6544 456799999999999999999999999999999999 77776443333333322 222333332 111
Q ss_pred -h--HhHhhcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013271 309 -K--AEVVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQ 382 (446)
Q Consensus 309 -~--~~~v~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~ 382 (446)
. .+.+......+|+.. .++..|.++|+|+.. + +++||+++|+.++..+++. ++.++++.++++.
T Consensus 225 d~~ar~~m~~As~laG~a~~~~g~g~~Hal~h~L~~~--~-~~~HG~~~av~lp~v~~~~-------~~~~~~~~~~~~~ 294 (347)
T cd08184 225 SEENDDKLMMASYLGGMSIANSQVGVCHAASYGLSLH--L-GYHHGIANCIAFNVLEEFY-------PEGVDEFRLMMKK 294 (347)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcccccchhhchHhhcC--C-CCChHHHHHHHHHHHHHHh-------hhhHHHHHHHHHH
Confidence 0 011122234456542 245569999988876 4 7999999999998776652 3456778888877
Q ss_pred --cCCCCCCCCCCCHHHHHHHHHHhHh
Q 013271 383 --AKLPTAPPDTMTVEMFKSIMAVDKK 407 (446)
Q Consensus 383 --lGlP~~~~~~i~~e~~~~~l~~dkk 407 (446)
+|+|.++.+.++++++.+.....-+
T Consensus 295 ~~~glp~~L~~gv~~~~~~~~~~~a~~ 321 (347)
T cd08184 295 HKIDLPKGICASLTDAQMDRMVASTLV 321 (347)
T ss_pred cCCCCchHHHcCCCHHHHHHHHHHHHh
Confidence 9999988877888887666555444
No 52
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=100.00 E-value=4.6e-37 Score=314.63 Aligned_cols=296 Identities=24% Similarity=0.328 Sum_probs=214.6
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
|.+|+||+|++++ +++++++ + |++||||+.+.+. +.+++.+.|++.++ ++.+|.+.+++|+.++++++.+.
T Consensus 1 P~~i~~G~g~l~~l~~~l~~~--g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i----~~~~~~~~~~~p~~~~v~~~~~~ 73 (366)
T PF00465_consen 1 PTKIIFGRGALEELGEELKRL--G-RVLVVTDPSLSKSGLVDRVLDALEEAGI----EVQVFDGVGPNPTLEDVDEAAEQ 73 (366)
T ss_dssp ESEEEESTTGGGGHHHHHHCT--T-EEEEEEEHHHHHHTHHHHHHHHHHHTTC----EEEEEEEESSS-BHHHHHHHHHH
T ss_pred CCcEEEccCHHHHHHHHHHhc--C-CEEEEECchHHhCccHHHHHHHHhhCce----EEEEEecCCCCCcHHHHHHHHHH
Confidence 5789999999999 9999874 4 9999999966666 89999999999984 34566767789999999999999
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhhcC-----------------CCeEEEEcCCcCccccccccCeEEEeeCC-
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLR-----------------GVSFIQIPTTVMAQVDSSVGGKTGINHRL- 232 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~-----------------g~p~i~IPTTl~A~tds~v~~k~~i~~~~- 232 (446)
++++++| +||||||||++|+||.++..+.. .+|+|+|||| ++|||++++.+++..+.
T Consensus 74 ~~~~~~D---~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt--~gtGsE~t~~avi~d~~~ 148 (366)
T PF00465_consen 74 ARKFGAD---CIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTT--AGTGSEVTPYAVIYDEEG 148 (366)
T ss_dssp HHHTTSS---EEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESS--SSSSGCCSSEEEEEETTT
T ss_pred HHhcCCC---EEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCC--cccccccccccccccccc
Confidence 9999999 99999999999999999876542 2899999999 77899999999998653
Q ss_pred -cccccc-cccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhh
Q 013271 233 -GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENK 309 (446)
Q Consensus 233 -~K~~ig-~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~ 309 (446)
.|..+. ....|+.+|+||+++.++|++++++|++|+|.|++ |.|++...+...+.++... +.+.+.+.+.+.+.
T Consensus 149 ~~k~~~~~~~~~P~~~i~Dp~l~~~lP~~~~~~~~~dal~hai---E~~~s~~~~~~s~~~a~~ai~li~~~l~~~~~~~ 225 (366)
T PF00465_consen 149 GRKLSIRSPKLYPDAAILDPELTATLPPRLTASGGLDALAHAI---EAYLSPKANPLSDALALQAIRLIFENLPRAVADP 225 (366)
T ss_dssp TEEEEEEEGGGS-SEEEEEGGGGTTS-HHHHHHHHHHHHHHHH---HHHHSTTT-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeccccCcccCcceeEecHHhhcCCCHHHHhhhHHHHHHHHH---HHHhhcccCcccHHHHHHHHHHHHHHHHHhhhhh
Confidence 343333 34599999999999999999999999999999999 7877643333333332211 22333444443333
Q ss_pred HhHhh-----cchhhhhhH---hhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHH------------HHHcCCC-
Q 013271 310 AEVVS-----LDEKESGLR---ATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLGWI- 368 (446)
Q Consensus 310 ~~~v~-----~d~~~~G~r---~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~l------------a~~~g~~- 368 (446)
.+... .....+|+. ..++..|.++|+++.. + +++||+++++.++..+++ ++.+|..
T Consensus 226 ~~~~ar~~l~~as~laG~a~~~~~~g~~Hal~~~l~~~--~-~v~HG~~~a~~lp~v~~~~~~~~~~~~~~l~~~l~~~~ 302 (366)
T PF00465_consen 226 EDLEARENLALASTLAGLAISNAGTGAAHALSHALGAR--Y-GVPHGEAVAILLPHVLRFNAPSAPEKLARLAKALGVDT 302 (366)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHH--H-TS-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTHCT
T ss_pred hHHHHHHHHHHHHhhccccccccccccccccccccccc--e-eecchhhhhcccHHHHHHHHHhhHHHHHHHHHhcCCCc
Confidence 22211 122344553 1345568888888765 4 799999999999877643 3444421
Q ss_pred --------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhH
Q 013271 369 --------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDK 406 (446)
Q Consensus 369 --------~~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dk 406 (446)
.++.++++.++++++|+|+++.+. ++++++.+......
T Consensus 303 ~~~~~~~~a~~~~~~l~~l~~~lglp~~l~~~gi~~~~l~~ia~~a~ 349 (366)
T PF00465_consen 303 EGGSAEEAADDAIDELRALLRSLGLPTRLSDLGIDEEDLDEIAEAAL 349 (366)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHTT--SSGGGGT-TGGGHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCCHHHcCCCHHHHHHHHHHHH
Confidence 135689999999999999999885 88877766554443
No 53
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=100.00 E-value=7.4e-36 Score=299.77 Aligned_cols=320 Identities=23% Similarity=0.282 Sum_probs=234.5
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
.|.+++.|+|+++. ++++.+. ..++++||+|+++++.+.+++.+.|...| +.+ .....+|. ++++++++...
T Consensus 7 ~P~~~~~G~~~i~~~~~~~~~~-~~~~~lvv~g~~~~~~~~~~~~~~l~~~g--~~~--~~~~~~~a--~~~ev~~~~~~ 79 (360)
T COG0371 7 LPREYIQGKGAINKLLEVLLKL-GLSRALVVTGENTYAIAGEKVEKSLKDEG--LVV--HVVFVGEA--SEEEVERLAAE 79 (360)
T ss_pred cCceEEECCChhhhHHHHHHhc-cCCceEEEEChhHHHHHHHHHHHHhcccC--cce--eeeecCcc--CHHHHHHHHHH
Confidence 46788999999998 8888776 35999999999999999999999999998 333 23344554 99999999998
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCe-EEEeeCCcccccccccCceEEEEe
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGK-TGINHRLGKNLIGAFYQPQCVLVD 249 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k-~~i~~~~~K~~ig~~~~P~~viiD 249 (446)
+.+.++| +|||||||+++|+||++ +|..++|+|.|||+ |++|+.+++. +++..+.++...-....|.+||+|
T Consensus 80 ~~~~~~d---~vIGVGGGk~iD~aK~~--A~~~~~pfIsvPT~--AS~Da~~Sp~aSv~~~~~g~~~~~~~~~P~~vivD 152 (360)
T COG0371 80 AGEDGAD---VVIGVGGGKTIDTAKAA--AYRLGLPFISVPTI--ASTDAITSPVASVIYNGKGDKYSFLAKAPDAVIVD 152 (360)
T ss_pred hcccCCC---EEEEecCcHHHHHHHHH--HHHcCCCEEEecCc--cccccccCCceeeEEcCCCceeeeecCCCcEEEEc
Confidence 8777777 99999999999999998 57899999999999 8899999995 444444432212122489999999
Q ss_pred hHhhccCCHHHHHhHHHHHH-HHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhh-----------cch
Q 013271 250 TDTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVS-----------LDE 317 (446)
Q Consensus 250 p~ll~tlP~~~~~sG~~Dal-kha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~-----------~d~ 317 (446)
++++...|.|++++|++|+| |.-...||..-..+.. . ........+.++..+.+....+.+. ...
T Consensus 153 ~evI~~AP~r~L~AGiGD~lakw~e~~dw~~a~~~~~--e-~~~~~a~~la~~~~~~~~~~~~~i~~~~~~~~~~~veal 229 (360)
T COG0371 153 TEVIAAAPRRLLAAGIGDALAKWTEARDWKLAHRLTG--E-GYSEAAAALAKMCAKTLIEAAEEIKNALEEAVRPLVEAL 229 (360)
T ss_pred HHHHHhChHHHHHhcchHhhhhHHHHHHHHHhccccc--c-hhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999999999999 6555555554322110 0 0111112233333333322222111 122
Q ss_pred hhhhh--------HhhcCcchhhhhhhhhcc-CCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHH--HHHHHHHHcCCC
Q 013271 318 KESGL--------RATLNLGHTFGHAIETGF-GYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVK--RVHNILQQAKLP 386 (446)
Q Consensus 318 ~~~G~--------r~~l~~gHti~Hale~~~-~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~--~i~~ll~~lGlP 386 (446)
.++|. |..++..|.|+|+|+... +.++.+|||+||+|++++++|-.. ..++++ ++.++++++|+|
T Consensus 230 I~sg~~m~g~G~s~p~sgaeH~~hh~Lt~l~~~~h~~lHGekVa~Gtlv~~~L~~~----~~~~~~~~~i~~~~~~~glP 305 (360)
T COG0371 230 IESGTAMSGLGSSRPASGAEHAFHHGLTMLPPETHHALHGEKVAYGTLVQLYLHGK----NWEEIEARKIRDFLKKVGLP 305 (360)
T ss_pred HHhcceEEeccCCCCccHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHhcC----chhhhhHHHHHHHHHHcCCC
Confidence 23332 234566799999999986 445799999999999999988532 233333 499999999999
Q ss_pred CCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHH
Q 013271 387 TAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 441 (446)
Q Consensus 387 ~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~ 441 (446)
+++.++ ++.++..+++...++.|+.+..+ +..| ..++.+.+.++++
T Consensus 306 ttl~elgl~~~~~~eal~vAh~~r~~r~TI--l~~~-------~~~t~e~~~~a~~ 352 (360)
T COG0371 306 TTLAELGLDDDEVIEALTVAHAIRPERETI--LGMP-------FGLTPEAARAALE 352 (360)
T ss_pred cCHHHcCCCchhHHHHHHHHHHhCCCCccc--ccCC-------CCCCHHHHHHHHH
Confidence 999986 88888999999999988765443 2322 2778888888875
No 54
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=100.00 E-value=7.3e-36 Score=289.94 Aligned_cols=320 Identities=22% Similarity=0.305 Sum_probs=245.3
Q ss_pred CeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCC
Q 013271 82 PTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENY 158 (446)
Q Consensus 82 ~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~ 158 (446)
|.++.+. +|++|+||.|.+.+ ++.+++ .+|+||+++.+..+. ..++|.+.|+ |+ +++.|.+.|||
T Consensus 1 M~nF~y~---nPTki~FGkg~i~~l~~ei~~---~~kVLi~YGGGSIKrnGvydqV~~~Lk--g~----~~~E~~GVEPN 68 (384)
T COG1979 1 MNNFTYH---NPTKILFGKGQIAELREEIPK---DAKVLIVYGGGSIKKNGVYDQVVEALK--GI----EVIEFGGVEPN 68 (384)
T ss_pred CCCcccc---CCceEEecCchHHHHHhhccc---cCeEEEEecCccccccchHHHHHHHhc--Cc----eEEEecCCCCC
Confidence 5566665 78999999999999 888875 499999999988776 8899999998 42 46889999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh----------------cCCCeEEEEcCCcCccccccc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSV 222 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~----------------~~g~p~i~IPTTl~A~tds~v 222 (446)
|++++++++++.++++++| +|+|||||||+|.+||+|+.- ..-+|+-+|-|- ++|+|++
T Consensus 69 P~~~Tv~kaV~i~kee~id---flLAVGGGSViD~tK~IAa~a~y~GD~Wdi~~~~~~i~~alP~g~VLTL--pATGSEm 143 (384)
T COG1979 69 PRLETLMKAVEICKEENID---FLLAVGGGSVIDGTKFIAAAAKYDGDPWDILTKKHKIKDALPIGTVLTL--PATGSEM 143 (384)
T ss_pred chHHHHHHHHHHHHHcCce---EEEEecCcchhhhHHHHHhhcccCCChHHHHhcCCccccccccceEEEc--ccccccc
Confidence 9999999999999999999 999999999999999998751 245899999877 7899999
Q ss_pred cCeEEEeeCCc--ccccc-cccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHH
Q 013271 223 GGKTGINHRLG--KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFA 299 (446)
Q Consensus 223 ~~k~~i~~~~~--K~~ig-~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~ 299 (446)
...++|+...+ |...+ +..+|.++|+||+.+.|+|++++++|++|++.|-+ |.||..-... .-++.++
T Consensus 144 n~~aVIt~~~t~eK~~~~S~~v~PkFsvLDP~~tyTlP~~Q~a~G~vDa~sHv~---EqYft~~~~a------~lQDr~a 214 (384)
T COG1979 144 NAGAVITNEETKEKLGFGSPLVFPKFSVLDPEVTYTLPKRQTANGVVDAFSHVF---EQYFTYPVNA------KLQDRFA 214 (384)
T ss_pred CCCceecccccccceeccCcccccceEEeCCcceeecChHHhhhhHHHHHHHHH---HHHhcCcCCc------hhhHHHH
Confidence 99999987655 44444 34599999999999999999999999999999999 7887643211 1135566
Q ss_pred HHHHHHHHhhHhHhhcchhhhhhHh------------hcCcc-------hhhhhhhhhccCCCCCCcHHhhhhhHHHHHH
Q 013271 300 YAIKRSCENKAEVVSLDEKESGLRA------------TLNLG-------HTFGHAIETGFGYGQWLHGEAVAAGMVMAVD 360 (446)
Q Consensus 300 ~~i~~s~~~~~~~v~~d~~~~G~r~------------~l~~g-------Hti~Hale~~~~~~~i~HGeaVAig~~~~~~ 360 (446)
+.+-+.+......+..++.+...|+ .++.| |.++|.+.+. | +++||...|+.+|..+.
T Consensus 215 E~~l~TlIe~gpk~l~~p~nY~~RanlmWaaT~AlNGli~~G~~~DWAtH~i~HelsA~--y-~i~Ha~~LAIv~P~~m~ 291 (384)
T COG1979 215 EGILRTLIEYGPKLLEDPENYEARANLMWAATMALNGLIGAGVPQDWATHMIGHELTAL--Y-DIDHAQGLAIVLPAWMN 291 (384)
T ss_pred HHHHHHHHHHhHHHhcCCccHHHHHHHHHHHHHHhhchhhcCCCCchhhhhhcchhhhh--c-CCccccceeEechHHHH
Confidence 6666655544444444554444432 23333 9999999987 5 89999999998887653
Q ss_pred H------------HHH-cCCC--C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeec
Q 013271 361 M------------SYR-LGWI--D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLK 419 (446)
Q Consensus 361 l------------a~~-~g~~--~-----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~ 419 (446)
. +.+ .|.- + ++.+++++++++++|.|+.+++. ++.|.+.-+.....++..+
T Consensus 292 ~~~~~k~~k~~q~a~rV~gi~~g~~~e~i~~~I~ktr~ff~slGv~trlsdygi~~e~~~~~~~~l~~~~~~-------- 363 (384)
T COG1979 292 YTLDQKRAKLLQYAERVWGITEGSDDEIIDEAIAKTREFFESLGVPTRLSDYGIDEEKIPLLLEKLEKHGMG-------- 363 (384)
T ss_pred HHHhhcHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHcCCccchhhcCCChhhhHHHHHHHHhcccc--------
Confidence 2 221 2222 1 24678999999999999999986 8888854444443455332
Q ss_pred CCCCceeEcCCCCHHHHHHHHHH
Q 013271 420 GPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 420 ~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
. +|+. ++++.++.++.|+.
T Consensus 364 ~-lG~~---~~l~~~dv~~Il~~ 382 (384)
T COG1979 364 T-LGEF---GDLNLQDVREILEA 382 (384)
T ss_pred c-cccc---ccccHHHHHHHHHh
Confidence 2 5554 68888888888864
No 55
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=100.00 E-value=2.7e-35 Score=299.43 Aligned_cols=313 Identities=18% Similarity=0.237 Sum_probs=220.5
Q ss_pred EEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHc
Q 013271 96 IYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES 174 (446)
Q Consensus 96 I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~ 174 (446)
++||+|++++ ++++++. ++|++||+|+.++..+.+++.+.|++.++ ++ .++...++||+.++|+++++.++++
T Consensus 4 y~~G~g~~~~l~~~~~~~--~~r~liv~d~~~~~~~~~~v~~~l~~~~~--~~--~~~~~~~~~p~~~~v~~~~~~~~~~ 77 (345)
T cd08171 4 YSIGEDAYKKIPEVCEKY--GKKVVVIGGKTALAAAKDKIKAALEQSGI--EI--TDFIWYGGESTYENVERLKKNPAVQ 77 (345)
T ss_pred eEeCcCHHHHHHHHHHhc--CCEEEEEeCHHHHHHHHHHHHHHHHHCCC--eE--EEEEecCCCCCHHHHHHHHHHHhhc
Confidence 4799999999 8888873 59999999998887789999999998884 33 3344455688999999999999999
Q ss_pred CCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCC--cccccccccCceEEEEehHh
Q 013271 175 RLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRL--GKNLIGAFYQPQCVLVDTDT 252 (446)
Q Consensus 175 ~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~--~K~~ig~~~~P~~viiDp~l 252 (446)
++| +||||||||++|+||++|..+ ++|+|+|||| ++|||++++.++++.+. .|+.++.+..|+++|+||++
T Consensus 78 ~~d---~iiavGGGs~~D~aK~ia~~~--~~p~i~VPTt--~gtgse~t~~avi~~~~~~~K~~~~~~~~P~~~i~Dp~l 150 (345)
T cd08171 78 EAD---MIFAVGGGKAIDTVKVLADKL--GKPVFTFPTI--ASNCAAVTAVSVVYNDDGSFKEYYFFKNPPVHCFIDTEI 150 (345)
T ss_pred CCC---EEEEeCCcHHHHHHHHHHHHc--CCCEEEecCc--cccCccccceEEEEcCCCceeecccccCCCCEEEECHHH
Confidence 999 999999999999999998764 8999999999 78999999999987643 36666777899999999999
Q ss_pred hccCCHHHHHhHHHHHHHHhhccchhHHHHHHhh--hhHhhcCC-HH----HHHHHHHHHHHhhHhHh---hcc------
Q 013271 253 LNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQN--MHKLMARD-PR----AFAYAIKRSCENKAEVV---SLD------ 316 (446)
Q Consensus 253 l~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~--~~~~~~~~-~~----~l~~~i~~s~~~~~~~v---~~d------ 316 (446)
+.++|++++++|++|+|.|++ |.|+...... ..+.++.. .+ .+.+.+.+++.+..+.. .+.
T Consensus 151 ~~~~P~~~~~~g~~Dal~ha~---E~y~s~~~~~~~~~~~~a~~~~~~~~~~l~~~l~~a~~~~~~~~~~~ar~~m~~a~ 227 (345)
T cd08171 151 IAEAPEKYLWAGIGDTLAKYY---EVTFSARGEKLDHTNLLGVTISRMCSEPLLEYGKKALEDCRNNKVSYALEQVILAI 227 (345)
T ss_pred HHhCCHHHHHHHHHHHHHHHH---HHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999999999 7776542111 11211111 01 12233334443322211 000
Q ss_pred hhhhhhHhh---cCcchhhhhhhhhccC-----CCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCC
Q 013271 317 EKESGLRAT---LNLGHTFGHAIETGFG-----YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTA 388 (446)
Q Consensus 317 ~~~~G~r~~---l~~gHti~Hale~~~~-----~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~ 388 (446)
....|+... ..+.|.+.|++..... ....+||+.++++..+.... .+ ..+.++++.+|++++|+|++
T Consensus 228 ~~~~G~~~~la~~~~~~~~~Hg~~~al~~lp~~~~~~~hg~~~~~~~~~~~~~---~~--~~~~i~~i~~l~~~lglP~~ 302 (345)
T cd08171 228 IVTTGIVSNLVTPDYNSGLAHALFYGLTTLPHIEENHLHGEVVSYGVLVLLLV---DG--QEEELERIYPFNKSIGLPVC 302 (345)
T ss_pred HHhhcccccccccCCchHHHHHHHHHhhcCcccccccCccchhHHHHHHHHHH---cC--CHHHHHHHHHHHHHcCCCCc
Confidence 011122111 1222234455443321 12458999988887766532 11 35679999999999999999
Q ss_pred CCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 389 PPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 389 ~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
+++. ++++++.+.....-+. ..+. ..| ..++++++.+++.+
T Consensus 303 L~~~gv~~~~l~~~~~~a~~~--~~~~----~~p-------~~~t~e~i~~~~~~ 344 (345)
T cd08171 303 LEDLGLTEDDLEKVLEKALAT--QDLK----HVP-------YPVTKEMIAEAIKD 344 (345)
T ss_pred HHHcCCCHHHHHHHHHHhcCc--chHh----hCC-------CCCCHHHHHHHHHh
Confidence 9886 8888887766554321 1110 012 47789999988865
No 56
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=100.00 E-value=7.9e-35 Score=326.99 Aligned_cols=289 Identities=22% Similarity=0.279 Sum_probs=218.9
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHh--cCCCCeeEEEEEeCCCCCCCcHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALT--RGNPNVSVENVILPDGENYKNMDTLMKV 167 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~--~~gi~~~v~~~i~~~ge~~~t~~~v~~~ 167 (446)
.|.+|+||+|++++ ++++. +++|+|||||+.+.+. +.+++.+.|+ ..++ .+.+|++.++||+++.++++
T Consensus 459 ~P~~i~~G~g~l~~l~~~l~---~~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i----~~~~~~~v~~np~~~~v~~~ 531 (862)
T PRK13805 459 VPKKIYFERGSLPYLLDELD---GKKRAFIVTDRFMVELGYVDKVTDVLKKRENGV----EYEVFSEVEPDPTLSTVRKG 531 (862)
T ss_pred cCCeEEECCCHHHHHHHHhc---CCCEEEEEECcchhhcchHHHHHHHHhcccCCC----eEEEeCCCCCCcCHHHHHHH
Confidence 46899999999999 87774 4689999999999888 9999999998 6663 45678899999999999999
Q ss_pred HHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh---------------------------cCCCeEEEEcCCcCccccc
Q 013271 168 FDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---------------------------LRGVSFIQIPTTVMAQVDS 220 (446)
Q Consensus 168 ~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~---------------------------~~g~p~i~IPTTl~A~tds 220 (446)
++.+++.++| +||||||||++|+||++|..+ .+++|+|+|||| ++|||
T Consensus 532 ~~~~~~~~~D---~IIaiGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTT--agTGS 606 (862)
T PRK13805 532 AELMRSFKPD---TIIALGGGSPMDAAKIMWLFYEHPETDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTT--SGTGS 606 (862)
T ss_pred HHHHHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCCHHHHHHHhcccccccccccccCCCCcEEEeeCC--CCccc
Confidence 9999999999 999999999999999998632 256899999999 78999
Q ss_pred cccCeEEEeeCC--ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-H
Q 013271 221 SVGGKTGINHRL--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-R 296 (446)
Q Consensus 221 ~v~~k~~i~~~~--~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~ 296 (446)
+++..++++.+. .|..+ ..+..|+.+|+||+++.++|++++++|++|+|+|++ |.|++...+...+.++... +
T Consensus 607 E~t~~avi~~~~~~~K~~~~~~~~~P~~~ivDp~l~~tlP~~~taa~g~Dal~ha~---Eay~s~~~~~~sd~~a~~ai~ 683 (862)
T PRK13805 607 EVTPFAVITDDKTGVKYPLADYELTPDVAIVDPNLVMTMPKSLTADTGIDALTHAL---EAYVSVMASDYTDGLALQAIK 683 (862)
T ss_pred ccCCeEEEEecCCCeEEEeeCCCccCCEEEECHHHHccCCHHHHHHHHHHHHHHHH---HHHHccCCCHHHHHHHHHHHH
Confidence 999999987653 24333 456799999999999999999999999999999999 7777643333333332221 2
Q ss_pred HHHHHHHHHHHhh-HhH-----hhcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHH------
Q 013271 297 AFAYAIKRSCENK-AEV-----VSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------ 361 (446)
Q Consensus 297 ~l~~~i~~s~~~~-~~~-----v~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~l------ 361 (446)
.+.+.+.+.+.+. .+. +......+|+.. .++..|.++|+++.. + +++||+++|+.++..+++
T Consensus 684 li~~~L~~a~~~~~~d~~ar~~m~~As~laG~a~~~~~~g~~Hal~~~lg~~--~-~v~HG~~~aillP~vl~~n~~~~~ 760 (862)
T PRK13805 684 LVFEYLPRSYKNGAKDPEAREKMHNASTIAGMAFANAFLGICHSMAHKLGAE--F-HIPHGRANAILLPHVIRYNATDPP 760 (862)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhcC--c-CCChHHHHHHHHHHHHHHhhhccc
Confidence 3334444444433 221 112233455542 234568888888765 4 899999999998865543
Q ss_pred --------------------HHHcCCC---C----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHH
Q 013271 362 --------------------SYRLGWI---D----DSIVKRVHNILQQAKLPTAPPDT-MTVEMF 398 (446)
Q Consensus 362 --------------------a~~~g~~---~----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~ 398 (446)
+..+|.- + .+.++++.+|++++|+|+++.+. ++++++
T Consensus 761 ~~~~~~~~~~~~~~~k~~~la~~l~~~~~~~~~~a~~~i~~i~~l~~~lglP~~L~~~gv~~~~~ 825 (862)
T PRK13805 761 KQAAFPQYEYPRADERYAEIARHLGLPGSTTEEKVESLIKAIEELKAELGIPMSIKEAGVDEADF 825 (862)
T ss_pred cccccccccccccHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 2224431 1 13578899999999999999875 777765
No 57
>PRK10586 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.1e-34 Score=290.21 Aligned_cols=310 Identities=16% Similarity=0.214 Sum_probs=211.9
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
|-++++|+|++++ +++++++ +.+|++||+|+..++...+.+.+.|++.++ . +..|. +++ +.++++++.+..
T Consensus 12 p~~y~~G~ga~~~l~~~~~~~-g~~~~lvv~g~~~~~~~~~~~~~~l~~~~~--~--~~~~~-g~~--~~~~v~~l~~~~ 83 (362)
T PRK10586 12 PANYFSHPGSIDHLHDFFTDE-QLSRAVWIYGERAIAAAQPYLPPAFELPGA--K--HILFR-GHC--SESDVAQLAAAS 83 (362)
T ss_pred CcceEECcCHHHHHHHHHHhc-CCCeEEEEEChHHHHHHHHHHHHHHHHcCC--e--EEEeC-CCC--CHHHHHHHHHHh
Confidence 3566899999999 9999886 358999999999998888888999999884 2 33444 544 688888887665
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCccc-cccc-ccCceEEEEe
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKN-LIGA-FYQPQCVLVD 249 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~-~ig~-~~~P~~viiD 249 (446)
. .++| +|||||||+++|+||++|. ..++|+|+|||| +++||++++.++++.+.++. .... ...|..+|+|
T Consensus 84 ~-~~~d---~iiavGGGs~iD~aK~~a~--~~~~p~i~vPT~--a~t~s~~s~~avi~~~~~~~~~~~~~~~~p~~~i~D 155 (362)
T PRK10586 84 G-DDRQ---VVIGVGGGALLDTAKALAR--RLGLPFVAIPTI--AATCAAWTPLSVWYNDAGQALHFEIFDDANFLVLVE 155 (362)
T ss_pred c-cCCC---EEEEecCcHHHHHHHHHHh--hcCCCEEEEeCC--ccccccccCceEEECCCCCeeeecccCCCCCEEEEC
Confidence 3 5677 9999999999999999964 578999999999 78999999999988654422 1211 2369999999
Q ss_pred hHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHh---hhhHhhcCCHHHHHHHHHHHH--------Hhh---------
Q 013271 250 TDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQ---NMHKLMARDPRAFAYAIKRSC--------ENK--------- 309 (446)
Q Consensus 250 p~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~---~~~~~~~~~~~~l~~~i~~s~--------~~~--------- 309 (446)
|+++.++|.+++++|++|+|.|++ |.++..-.. ...+.++ ..+.+++.+.+ .+.
T Consensus 156 ~~l~~~~P~~~~~ag~~Dal~~~~---Ea~~~~~~~~~~~~~~~~~---~~~a~~~~~~l~~~~~~a~~~~~~~~~~~~~ 229 (362)
T PRK10586 156 PRIILNAPQEYLLAGIGDTLAKWY---EAVVLAPQPETLPLTVRLG---INNALAIRDVLLNSSEQALADQQNGQLTQDF 229 (362)
T ss_pred hHHHhcCCHHHHHHHHHHHHHHHH---HHHHccccccCCchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 999999999999999999999988 555531000 0011110 11122222221 110
Q ss_pred HhHhhcchhhhhhHhhcCc---chhhhhhhhhcc----CCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013271 310 AEVVSLDEKESGLRATLNL---GHTFGHAIETGF----GYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQ 382 (446)
Q Consensus 310 ~~~v~~d~~~~G~r~~l~~---gHti~Hale~~~----~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~ 382 (446)
.+++...-..+|+-..+++ +-+++|++...+ ..++++|||+||+||.+++.+. | +++.++++.+++++
T Consensus 230 ~~vv~a~i~~~g~~s~~g~~~~~~a~aHai~~~lt~~~~~~~~lHGeaVa~G~l~~l~l~---~--~~~~~~~l~~~l~~ 304 (362)
T PRK10586 230 CDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALL---G--QDDVLAQLIGAYQR 304 (362)
T ss_pred HHHHHHHHHHhhhhhhcccCCCccHHHHHHHHccccccCCCcCCCHHHHHHHHHHHHHHc---C--CHHHHHHHHHHHHH
Confidence 0111111122333333333 344556555532 1246899999999999988884 3 46789999999999
Q ss_pred cCCCCCCCCC-CC---HHHHHHHHHHhHhhcCC-ceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 383 AKLPTAPPDT-MT---VEMFKSIMAVDKKVADG-LLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 383 lGlP~~~~~~-i~---~e~~~~~l~~dkk~~~g-~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
+|+|+++++. ++ .+++..+ . ++..+++ .++. +| .+++++++.+++++
T Consensus 305 lGLP~~L~dlGi~~~~~e~l~~i-a-~~a~~~~~~~~~-~p----------~~vt~e~i~~ai~~ 356 (362)
T PRK10586 305 FHLPTTLAELDVDINNQAEIDRV-I-AHTLRPVESIHY-LP----------VTLTPDTLRAAFEK 356 (362)
T ss_pred cCCCCCHHHCCCCCCCHHHHHHH-H-HHHcCCcchhhc-CC----------CCCCHHHHHHHHHH
Confidence 9999998875 64 4555444 2 2333433 2221 11 36888999988864
No 58
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=100.00 E-value=4.5e-33 Score=271.17 Aligned_cols=324 Identities=20% Similarity=0.234 Sum_probs=235.6
Q ss_pred eeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 94 YPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 94 ~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
..+.||.|++.+ +..+++. +.|++++|||+++.++ ..+.+.+.|++.||++ .++++..++||...+.++++++
T Consensus 49 s~~rfG~gv~~Evg~dikn~-gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~~----~vyD~v~~ePtv~s~~~alefa 123 (465)
T KOG3857|consen 49 STSRFGKGVLAEVGDDIKNL-GAKKTLLVTDKNIAKLGLVKVAQDSLEENGINV----EVYDKVQPEPTVGSVTAALEFA 123 (465)
T ss_pred chhhhcchhHHHHHHHHHhc-CccceEEeeCCChhhcccHHHHHHHHHHcCCce----EEecCccCCCchhhHHHHHHHH
Confidence 456899999999 9999987 6899999999999998 7899999999999643 4578899999999999999999
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHHhh----------------------cCCCeEEEEcCCcCccccccccCeEEEe
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAASY----------------------LRGVSFIQIPTTVMAQVDSSVGGKTGIN 229 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~----------------------~~g~p~i~IPTTl~A~tds~v~~k~~i~ 229 (446)
++.++| .+|||||||++|.||.+|..- ..-+|+|+|||| |+|+|++++.+.++
T Consensus 124 k~~~fD---s~vaiGGGSa~DtaKaaaL~Asn~~~eflDyvg~pigk~~~~s~p~lPLiAipTT--aGTgSEtT~~AI~d 198 (465)
T KOG3857|consen 124 KKKNFD---SFVAIGGGSAHDTAKAAALLASNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPTT--AGTGSETTRFAIID 198 (465)
T ss_pred Hhcccc---eEEEEcCcchhhhHHHHHHhhcCCCccchhccCCcccccccccccccceEecccC--CCccccceeeEEec
Confidence 999999 999999999999999987421 123899999999 89999999999998
Q ss_pred eCCcc--ccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHH--H-----------------hhh
Q 013271 230 HRLGK--NLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ--E-----------------QNM 287 (446)
Q Consensus 230 ~~~~K--~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l--~-----------------~~~ 287 (446)
.+..| -.| ..+..|...++||.-+.++|+++++.+++|+|+||+ |+|...- . +..
T Consensus 199 ~e~~k~K~gI~~k~ikP~lav~DPl~~~~~P~~v~a~tGfDvlcHal---Esyts~py~~rsp~psnp~~rp~yqgsNPI 275 (465)
T KOG3857|consen 199 YEELKIKMGIIDKNIKPTLAVNDPLTMLGLPPRVTAATGFDVLCHAL---ESYTSTPYDQRSPRPSNPGVRPLYQGSNPI 275 (465)
T ss_pred chhhheeeeeecccccceeeecChHHhccCChHHhhhcchHHHHHHH---HHHhcCcccccCCCCCCCccccccccCCch
Confidence 87554 333 345699999999999999999999999999999999 6665430 0 011
Q ss_pred hHhhcCCH-HHHHHHHHHHHHhhHhHhhcc-----hhhhhhH---hhcCcchhhhhhhhhcc------CCCC----CCcH
Q 013271 288 HKLMARDP-RAFAYAIKRSCENKAEVVSLD-----EKESGLR---ATLNLGHTFGHAIETGF------GYGQ----WLHG 348 (446)
Q Consensus 288 ~~~~~~~~-~~l~~~i~~s~~~~~~~v~~d-----~~~~G~r---~~l~~gHti~Hale~~~------~~~~----i~HG 348 (446)
++..+..+ +.+.+++.+++.+..+..+++ .+.+|+. +.+++.|.++|.|+... +|.+ +|||
T Consensus 276 sD~wA~~al~li~kyl~rAv~~p~d~eARt~M~~As~~aG~gFgNAgvhlcHglsypisg~vk~~kakdy~~dh~liPHG 355 (465)
T KOG3857|consen 276 SDAWALKALELINKYLVRAVKDPKDEEARTDMHYASYLAGMGFGNAGVHLCHGLSYPISGQVKSYKAKDYYHDHNLIPHG 355 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhccccCcccccceeeccccccCccccccccccccccccCCcc
Confidence 22222111 233455555555544443332 2344553 23455688888887731 2334 9999
Q ss_pred HhhhhhHHHHH------------HHHHHcCCC----------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHh
Q 013271 349 EAVAAGMVMAV------------DMSYRLGWI----------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVD 405 (446)
Q Consensus 349 eaVAig~~~~~------------~la~~~g~~----------~~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~d 405 (446)
.+|++..+... ..+.++|-+ .+...+++..+++.+|+|-.+.++ ++.+||..+..+.
T Consensus 356 lsv~v~~pavfeft~~~cP~rhl~aaq~LGa~~~h~~~~e~~~~~l~d~lr~~~~~~~i~~gL~~lG~~~sDi~~Lve~a 435 (465)
T KOG3857|consen 356 LSVAVLLPAVFEFTAAACPDRHLEAAQRLGAIARHFGASEDAGEELADRLRGLMRDMGIPNGLKELGVKTSDIEALVEHA 435 (465)
T ss_pred hhhhhhhhhhhhhccccCchhHHHHHHHhhhHhhcccchhccHHHHHHHHHHHHHhcCCCcchHhhCccccchHHHHhcc
Confidence 99998877542 244555532 245789999999999999999886 7777765544433
Q ss_pred HhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 406 KKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 406 kk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
-+... ..-+. | ...++|++...+++
T Consensus 436 ~~~~~----~~~~a-P-------~~~t~E~v~alfek 460 (465)
T KOG3857|consen 436 MHDAC----HTTNA-P-------RQQTKEQVSALFEK 460 (465)
T ss_pred ccccc----ccccC-C-------ccccHHHHHHHHHH
Confidence 22111 11111 2 25677888777654
No 59
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=99.98 E-value=1.3e-31 Score=259.49 Aligned_cols=235 Identities=28% Similarity=0.358 Sum_probs=164.3
Q ss_pred EEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcC
Q 013271 97 YIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESR 175 (446)
Q Consensus 97 ~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~ 175 (446)
.+|+|++++ +++++++ ..+++++|+|+++++.+.+++.+.|++.| +++.++... ...+++++++++.+.++..+
T Consensus 1 ~ig~ga~~~l~~~l~~~-~~~~~lvv~d~~t~~~~g~~v~~~l~~~g--~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~ 75 (250)
T PF13685_consen 1 VIGPGALDKLPEILSEL-GLKKVLVVTDENTYKAAGEKVEESLKSAG--IEVAVIEEF--VGDADEDEVEKLVEALRPKD 75 (250)
T ss_dssp EEESS-GGGHHHHHGGG-T-SEEEEEEETTHHHHHHHHHHHHHHTTT---EEEEEE-E--E---BHHHHHHHHTTS--TT
T ss_pred CcCccHHHHHHHHHHhc-CCCcEEEEEcCCHHHHHHHHHHHHHHHcC--CeEEEEecC--CCCCCHHHHHHHHHHhcccC
Confidence 489999999 9999987 57999999999999999999999999998 455433222 23469999999999988888
Q ss_pred CCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeC-CcccccccccCceEEEEehHhhc
Q 013271 176 LDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHR-LGKNLIGAFYQPQCVLVDTDTLN 254 (446)
Q Consensus 176 ~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~-~~K~~ig~~~~P~~viiDp~ll~ 254 (446)
+| +|||||||+++|+||++ +|.+++||+.|||+ +++|+-.++.+++..+ +.|..++....|.+|++|.++++
T Consensus 76 ~d---~ii~vGgG~i~D~~K~~--A~~~~~p~isVPTa--~S~DG~aS~~Asl~~~~g~k~s~~~a~~P~aIiaD~dIi~ 148 (250)
T PF13685_consen 76 AD---LIIGVGGGTIIDIAKYA--AFELGIPFISVPTA--ASHDGFASPVASLTVDDGFKVSYGPAKAPIAIIADTDIIA 148 (250)
T ss_dssp -----EEEEEESHHHHHHHHHH--HHHHT--EEEEES----SSGGGTSSEEEEEET-TEEEEE-E----SEEEEEHHHHH
T ss_pred CC---EEEEeCCcHHHHHHHHH--HHhcCCCEEEeccc--cccccccCCCeeEEecCCCceeecCCCCCeEEEEeHHHHH
Confidence 88 99999999999999999 56789999999999 6689999999999887 55554433579999999999999
Q ss_pred cCCHHHHHhHHHHHH-HHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhH---------hHhhcchhhhhh--
Q 013271 255 TLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKA---------EVVSLDEKESGL-- 322 (446)
Q Consensus 255 tlP~~~~~sG~~Dal-kha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~---------~~v~~d~~~~G~-- 322 (446)
..|.+++++|++|++ |...+.||.+.+....+ + .+...+++.+++..-. ..+......+|+
T Consensus 149 ~AP~~l~~aG~GDli~k~tA~~DW~La~~~~e~----~---~~~~~~~v~~~~~~~~~~~~d~~~i~~L~~~L~~sg~am 221 (250)
T PF13685_consen 149 NAPRRLIAAGFGDLISKYTALADWKLAHEYGEP----Y---CEYAADMVEEALRNILKDPDDPEAIKALMEALIMSGLAM 221 (250)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHHHTTS----------HHHHHHHHHHHH---S-TT-HHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHhhHHHHHHhhhhHHHHHHHHHhhhh----H---HHHHHHHHHHHHHHHHcCcCcHHHHHHHHHHHHHccccc
Confidence 999999999999999 88888898876533111 1 1223344444433211 112222334555
Q ss_pred -HhhcCcchhhhhhhhhccCCCCCCcHHhhh
Q 013271 323 -RATLNLGHTFGHAIETGFGYGQWLHGEAVA 352 (446)
Q Consensus 323 -r~~l~~gHti~Hale~~~~~~~i~HGeaVA 352 (446)
|+.+|.+|.|+|+||+.. .+.+||++||
T Consensus 222 SRPaSGsEH~~sH~le~~~--~~~lHG~~Vg 250 (250)
T PF13685_consen 222 SRPASGSEHLFSHALEMLA--KPALHGEQVG 250 (250)
T ss_dssp STTT-SHHHHHHHHHHHH---S---HHHHHH
T ss_pred CCCccchhhHHHHHHHhhc--CCCccccccC
Confidence 457899999999999986 4899999986
No 60
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00012 Score=76.15 Aligned_cols=79 Identities=30% Similarity=0.390 Sum_probs=64.2
Q ss_pred CcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCC----------CHHHHHHHHHHhHhhcCCceEE
Q 013271 346 LHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTM----------TVEMFKSIMAVDKKVADGLLRL 415 (446)
Q Consensus 346 ~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i----------~~e~~~~~l~~dkk~~~g~~~~ 415 (446)
+|||+||+||....++++.+|++++..+.++...+.++++|+++++.. ..++.++.+..|+++.+-..|.
T Consensus 1 LhgE~vaagmV~~aeLSr~lGiLsPtsVarLsKiLvr~~lp~Spdsss~k~~s~~r~~pfsk~~~~~s~d~~n~GS~~r~ 80 (595)
T KOG0692|consen 1 LHGECVAAGMVKEAELSRYLGILSPTSVARLSKILVRYSLPFSPDSSSPKLRSVPRKVPFSKSWGLKSSDKKNVGSEKRP 80 (595)
T ss_pred CcchhhhhccccHHHHHHhhCcCCHHHHhhhhHHHHhcCCCCCCCccchhhhcccccCchHHHHhhhhhhhhcccccccc
Confidence 699999999999999999999999999999999999999999886531 2455667777777776666666
Q ss_pred EeecCCCCce
Q 013271 416 ILLKGPLGNC 425 (446)
Q Consensus 416 vll~~~iG~~ 425 (446)
+.++. +|++
T Consensus 81 V~vea-~~~t 89 (595)
T KOG0692|consen 81 VKVEA-SVST 89 (595)
T ss_pred EEEee-cchh
Confidence 66665 5554
No 61
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=96.51 E-value=0.025 Score=51.19 Aligned_cols=85 Identities=18% Similarity=0.256 Sum_probs=67.0
Q ss_pred EEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHH
Q 013271 118 VLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYA 197 (446)
Q Consensus 118 vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~i 197 (446)
+.||+++...--+.++....|++-|+++++ -+.. .+.+.+.+.+..+.+.+.+++ +|||+.|+ ..-+.+.+
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv--~V~S---aHRtp~~~~~~~~~a~~~g~~---viIa~AG~-aa~Lpgvv 71 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYEL--RVVS---AHRTPELMLEYAKEAEERGIK---VIIAGAGG-AAHLPGMV 71 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEE--EEEC---cccCHHHHHHHHHHHHHCCCe---EEEEeCCc-cchhHHHH
Confidence 357777765545899999999999976544 3433 478999999999999998988 99998888 45677777
Q ss_pred HHhhcCCCeEEEEcCC
Q 013271 198 AASYLRGVSFIQIPTT 213 (446)
Q Consensus 198 Aa~~~~g~p~i~IPTT 213 (446)
|+ ....|+|.+|+.
T Consensus 72 a~--~t~~PVIgvP~~ 85 (156)
T TIGR01162 72 AA--LTPLPVIGVPVP 85 (156)
T ss_pred Hh--ccCCCEEEecCC
Confidence 54 578999999997
No 62
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=96.44 E-value=0.022 Score=51.33 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=64.5
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
++.||++......+.++..+.|++.|+.++ ..+.. .+++.+.+.+.++.+.+.+++ +||++-|+ ..-+.+.
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~--~~V~s---aHR~p~~l~~~~~~~~~~~~~---viIa~AG~-~a~Lpgv 72 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYE--VRVAS---AHRTPERLLEFVKEYEARGAD---VIIAVAGM-SAALPGV 72 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEE--EEE-----TTTSHHHHHHHHHHTTTTTES---EEEEEEES-S--HHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEE--EEEEe---ccCCHHHHHHHHHHhccCCCE---EEEEECCC-cccchhh
Confidence 688999987666699999999999996443 33433 478999999999888777777 99998888 5667888
Q ss_pred HHHhhcCCCeEEEEcCC
Q 013271 197 AAASYLRGVSFIQIPTT 213 (446)
Q Consensus 197 iAa~~~~g~p~i~IPTT 213 (446)
+|+ ....|+|.+|+.
T Consensus 73 va~--~t~~PVIgvP~~ 87 (150)
T PF00731_consen 73 VAS--LTTLPVIGVPVS 87 (150)
T ss_dssp HHH--HSSS-EEEEEE-
T ss_pred hee--ccCCCEEEeecC
Confidence 865 468999999988
No 63
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.18 Score=45.26 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=69.9
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
++.||.++...-.+.++..+.|++-|+.|++ .++. .+.|.+.+.+..+.+.+.|+. +|||.-|| .-.+-+.
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~--~VvS---AHRTPe~m~~ya~~a~~~g~~---viIAgAGg-AAHLPGm 74 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYEV--RVVS---AHRTPEKMFEYAEEAEERGVK---VIIAGAGG-AAHLPGM 74 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeEE--EEEe---ccCCHHHHHHHHHHHHHCCCe---EEEecCcc-hhhcchh
Confidence 6788888775444788888999999976654 3444 478999999999999999999 99998888 6788888
Q ss_pred HHHhhcCCCeEEEEcCC
Q 013271 197 AAASYLRGVSFIQIPTT 213 (446)
Q Consensus 197 iAa~~~~g~p~i~IPTT 213 (446)
+|+ +..+|+|.||--
T Consensus 75 vAa--~T~lPViGVPv~ 89 (162)
T COG0041 75 VAA--KTPLPVIGVPVQ 89 (162)
T ss_pred hhh--cCCCCeEeccCc
Confidence 876 468999999976
No 64
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=91.75 E-value=1.1 Score=47.23 Aligned_cols=88 Identities=28% Similarity=0.406 Sum_probs=54.7
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCC-CCcHHHHHHHHHHHHHcC-CCCcceEEEEcCccHHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-YKNMDTLMKVFDKAIESR-LDRRCTFVALGGGVIGD 192 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~-~~t~~~v~~~~~~~~~~~-~dr~~~IIAiGGGsv~D 192 (446)
.+++-|||.++-+. ..+|...+.+... .++++++|.-.. ..--..+-+.++.+.+.+ +| -.|||=||||+=|
T Consensus 135 p~~IGVITS~tgAa--irDIl~~~~rR~P--~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~D--vlIVaRGGGSiED 208 (440)
T COG1570 135 PKKIGVITSPTGAA--LRDILHTLSRRFP--SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVD--VLIVARGGGSIED 208 (440)
T ss_pred CCeEEEEcCCchHH--HHHHHHHHHhhCC--CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCC--EEEEecCcchHHH
Confidence 57899999997653 4555556665543 245566665322 123455555666655554 44 4889999999999
Q ss_pred HHHHH-----HHhhcCCCeEE
Q 013271 193 MCGYA-----AASYLRGVSFI 208 (446)
Q Consensus 193 ~aK~i-----Aa~~~~g~p~i 208 (446)
+-.|= =+.|...+|+|
T Consensus 209 LW~FNdE~vaRAi~~s~iPvI 229 (440)
T COG1570 209 LWAFNDEIVARAIAASRIPVI 229 (440)
T ss_pred HhccChHHHHHHHHhCCCCeE
Confidence 87541 12355677775
No 65
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=91.69 E-value=1.3 Score=48.72 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=70.2
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
.+|.|++++...--+.++....|++-|+++++ .+.. .+.+.+.+.+.++.+.+.+++ +|||+=|+ ..-+.+
T Consensus 411 ~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~--~v~s---ahr~~~~~~~~~~~~~~~~~~---v~i~~ag~-~~~l~~ 481 (577)
T PLN02948 411 PLVGIIMGSDSDLPTMKDAAEILDSFGVPYEV--TIVS---AHRTPERMFSYARSAHSRGLQ---VIIAGAGG-AAHLPG 481 (577)
T ss_pred CeEEEEECchhhHHHHHHHHHHHHHcCCCeEE--EEEC---CccCHHHHHHHHHHHHHCCCC---EEEEEcCc-cccchH
Confidence 46889999876655899999999999975543 4443 478999999999999988888 88887776 556778
Q ss_pred HHHHhhcCCCeEEEEcCC
Q 013271 196 YAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTT 213 (446)
.+|+ ...+|+|.||+.
T Consensus 482 ~~a~--~t~~pvi~vp~~ 497 (577)
T PLN02948 482 MVAS--MTPLPVIGVPVK 497 (577)
T ss_pred HHhh--ccCCCEEEcCCC
Confidence 7765 578999999997
No 66
>PRK13337 putative lipid kinase; Reviewed
Probab=91.52 E-value=1.5 Score=43.90 Aligned_cols=90 Identities=19% Similarity=0.233 Sum_probs=56.6
Q ss_pred CEEEEEECCCchh----HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccH
Q 013271 116 KKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVI 190 (446)
Q Consensus 116 k~vliVtd~~v~~----~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv 190 (446)
+|+++|.++.... ...+++.+.|.+.++ ++..+... ......++.+.+.+.+.| .||++|| |++
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~--~~~~~~t~------~~~~a~~~a~~~~~~~~d---~vvv~GGDGTl 70 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGY--ETSAHATT------GPGDATLAAERAVERKFD---LVIAAGGDGTL 70 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCC--EEEEEEec------CCCCHHHHHHHHHhcCCC---EEEEEcCCCHH
Confidence 5788888876543 245677888999884 33322222 113344455555566666 8888877 888
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCcCcccc
Q 013271 191 GDMCGYAAASYLRGVSFIQIPTTVMAQVD 219 (446)
Q Consensus 191 ~D~aK~iAa~~~~g~p~i~IPTTl~A~td 219 (446)
-+++..++.. ...+|+-.||.- ++.|
T Consensus 71 ~~vv~gl~~~-~~~~~lgiiP~G--T~Nd 96 (304)
T PRK13337 71 NEVVNGIAEK-ENRPKLGIIPVG--TTND 96 (304)
T ss_pred HHHHHHHhhC-CCCCcEEEECCc--CHhH
Confidence 8888766422 335789999966 4444
No 67
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=91.47 E-value=1.8 Score=46.39 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=59.1
Q ss_pred CCCEEEEEECCCchh----H-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-
Q 013271 114 QGKKVLVVTNNTVAP----L-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG- 187 (446)
Q Consensus 114 ~~k~vliVtd~~v~~----~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG- 187 (446)
..+|++|+.++...+ . +.+++...|+.+++ +++.+.- + .-....++++.+...+.| .||++||
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi--~~~v~~T---~---~~ghA~~la~~~~~~~~D---~VV~vGGD 178 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADI--QLTIQET---K---YQLHAKEVVRTMDLSKYD---GIVCVSGD 178 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCC--eEEEEec---c---CccHHHHHHHHhhhcCCC---EEEEEcCC
Confidence 358999999976543 2 44568889999985 3332221 1 113445555555556666 9999998
Q ss_pred ccHHHHHHHHHHhh----cCCCeEEEEcCCcCcccc
Q 013271 188 GVIGDMCGYAAASY----LRGVSFIQIPTTVMAQVD 219 (446)
Q Consensus 188 Gsv~D~aK~iAa~~----~~g~p~i~IPTTl~A~td 219 (446)
|++..+.-.+...- ...+|+-.||.- ++.|
T Consensus 179 GTlnEVvNGL~~~~~~~~~~~~pLGiIPaG--TgNd 212 (481)
T PLN02958 179 GILVEVVNGLLEREDWKTAIKLPIGMVPAG--TGNG 212 (481)
T ss_pred CHHHHHHHHHhhCccccccccCceEEecCc--Ccch
Confidence 88888886653210 125899999965 4444
No 68
>PRK13054 lipid kinase; Reviewed
Probab=91.19 E-value=1.7 Score=43.44 Aligned_cols=92 Identities=18% Similarity=0.144 Sum_probs=55.3
Q ss_pred CCEEEEEECCCchh-HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHH
Q 013271 115 GKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGD 192 (446)
Q Consensus 115 ~k~vliVtd~~v~~-~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D 192 (446)
-+++++|.++.... ....++.+.|.+.++ ++... ....+ ....++.+++.+.+.| .||++|| |++..
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~--~~~v~--~t~~~----~~a~~~a~~~~~~~~d---~vvv~GGDGTl~e 71 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEGH--TLHVR--VTWEK----GDAARYVEEALALGVA---TVIAGGGDGTINE 71 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcCC--EEEEE--EecCC----CcHHHHHHHHHHcCCC---EEEEECCccHHHH
Confidence 36788888876532 345567778988884 33322 21111 2234455555556666 7777777 88888
Q ss_pred HHHHHHHh-hcCCCeEEEEcCCcCcccc
Q 013271 193 MCGYAAAS-YLRGVSFIQIPTTVMAQVD 219 (446)
Q Consensus 193 ~aK~iAa~-~~~g~p~i~IPTTl~A~td 219 (446)
++-.++.. ....+|+-.||.- ++.|
T Consensus 72 vv~~l~~~~~~~~~~lgiiP~G--TgNd 97 (300)
T PRK13054 72 VATALAQLEGDARPALGILPLG--TAND 97 (300)
T ss_pred HHHHHHhhccCCCCcEEEEeCC--cHhH
Confidence 88665321 1235799999966 5555
No 69
>PRK13055 putative lipid kinase; Reviewed
Probab=90.82 E-value=1.9 Score=43.94 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=56.7
Q ss_pred CEEEEEECCCchh----HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccH
Q 013271 116 KKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVI 190 (446)
Q Consensus 116 k~vliVtd~~v~~----~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv 190 (446)
+|+++|.++.... ...+++.+.|.+.++ ++..+... . ......++.+.+.+.++| .||++|| |++
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~--~~~i~~t~-~----~~~~a~~~~~~~~~~~~d---~vvv~GGDGTl 72 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGY--ETSAFQTT-P----EPNSAKNEAKRAAEAGFD---LIIAAGGDGTI 72 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCC--eEEEEEee-c----CCccHHHHHHHHhhcCCC---EEEEECCCCHH
Confidence 6788999976543 256778889999884 33322221 1 112334455555556677 8999988 777
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCcCcccc
Q 013271 191 GDMCGYAAASYLRGVSFIQIPTTVMAQVD 219 (446)
Q Consensus 191 ~D~aK~iAa~~~~g~p~i~IPTTl~A~td 219 (446)
-.++-.+.. ....+|+-.||.- ++.|
T Consensus 73 ~evvngl~~-~~~~~~LgiiP~G--TgNd 98 (334)
T PRK13055 73 NEVVNGIAP-LEKRPKMAIIPAG--TTND 98 (334)
T ss_pred HHHHHHHhh-cCCCCcEEEECCC--chhH
Confidence 777765532 1345789999965 4444
No 70
>PRK11914 diacylglycerol kinase; Reviewed
Probab=90.44 E-value=3.4 Score=41.33 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=60.9
Q ss_pred CCEEEEEECCCchh----HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-cc
Q 013271 115 GKKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GV 189 (446)
Q Consensus 115 ~k~vliVtd~~v~~----~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gs 189 (446)
.+|+++|.++.... ...+++.+.|++.++ ++..+. . ..-....++.+++.+.++| .||++|| |+
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~--~~~~~~-t-----~~~~~~~~~a~~~~~~~~d---~vvv~GGDGT 76 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGV--DVVEIV-G-----TDAHDARHLVAAALAKGTD---ALVVVGGDGV 76 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCC--eEEEEE-e-----CCHHHHHHHHHHHHhcCCC---EEEEECCchH
Confidence 57899999976532 256778889998884 333222 1 1235677777777777777 8999988 67
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcCcccc
Q 013271 190 IGDMCGYAAASYLRGVSFIQIPTTVMAQVD 219 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p~i~IPTTl~A~td 219 (446)
+-.++..+ ...++|+-.||.- ++.|
T Consensus 77 i~evv~~l---~~~~~~lgiiP~G--T~Nd 101 (306)
T PRK11914 77 ISNALQVL---AGTDIPLGIIPAG--TGND 101 (306)
T ss_pred HHHHhHHh---ccCCCcEEEEeCC--Ccch
Confidence 77676544 3467999999966 4444
No 71
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=90.30 E-value=2.1 Score=45.32 Aligned_cols=89 Identities=27% Similarity=0.415 Sum_probs=53.7
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCC-CCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 193 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~-~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~ 193 (446)
.+++-|||.++... ...+...+.+... .+++.++|.-.. ......+-+.++.+...+ +-+-+||+=||||.-|+
T Consensus 129 p~~i~vits~~~aa--~~D~~~~~~~r~p--~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~-~~dviii~RGGGs~eDL 203 (432)
T TIGR00237 129 PKRVGVITSQTGAA--LADILHILKRRDP--SLKVVIYPTLVQGEGAVQSIVESIELANTKN-ECDVLIVGRGGGSLEDL 203 (432)
T ss_pred CCEEEEEeCCccHH--HHHHHHHHHhhCC--CceEEEecccccCccHHHHHHHHHHHhhcCC-CCCEEEEecCCCCHHHh
Confidence 57899999987653 4556666766553 234445554222 123455555555554322 12348899999999998
Q ss_pred HHH-----HHHhhcCCCeEE
Q 013271 194 CGY-----AAASYLRGVSFI 208 (446)
Q Consensus 194 aK~-----iAa~~~~g~p~i 208 (446)
.-| +-+.+...+|+|
T Consensus 204 ~~Fn~e~~~rai~~~~~Pvi 223 (432)
T TIGR00237 204 WSFNDEKVARAIFLSKIPII 223 (432)
T ss_pred hhcCcHHHHHHHHcCCCCEE
Confidence 754 223456677775
No 72
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=90.29 E-value=1.8 Score=45.76 Aligned_cols=88 Identities=26% Similarity=0.348 Sum_probs=52.1
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCC-CCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 193 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~-~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~ 193 (446)
.+|+-|||.++.+. ...+...+.+... .+++++++.-.. .-....+-+.++.+...++| -+||+=||||.-|+
T Consensus 135 p~~I~viTs~~gAa--~~D~~~~~~~r~p--~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~D--viii~RGGGS~eDL 208 (438)
T PRK00286 135 PKRIGVITSPTGAA--IRDILTVLRRRFP--LVEVIIYPTLVQGEGAAASIVAAIERANARGED--VLIVARGGGSLEDL 208 (438)
T ss_pred CCEEEEEeCCccHH--HHHHHHHHHhcCC--CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCC--EEEEecCCCCHHHh
Confidence 57899999997653 4555556665543 234455554222 11334445555554443333 47889999999998
Q ss_pred HHH-----HHHhhcCCCeEE
Q 013271 194 CGY-----AAASYLRGVSFI 208 (446)
Q Consensus 194 aK~-----iAa~~~~g~p~i 208 (446)
.-| +-+.+...+|+|
T Consensus 209 ~~Fn~e~v~~ai~~~~~Pvi 228 (438)
T PRK00286 209 WAFNDEAVARAIAASRIPVI 228 (438)
T ss_pred hccCcHHHHHHHHcCCCCEE
Confidence 643 223456677764
No 73
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=89.53 E-value=2.9 Score=41.42 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=50.7
Q ss_pred CEEEEEECCCchh----HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccH
Q 013271 116 KKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVI 190 (446)
Q Consensus 116 k~vliVtd~~v~~----~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv 190 (446)
+|++++.++.... ...+++.+.|.+.++ ++..+... .+ ... .+..+...+.++| .||++|| |++
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~--~~~~~~t~--~~-~~~---~~~~~~~~~~~~d---~ivv~GGDGTl 70 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGM--EIHVRVTW--EK-GDA---ARYVEEARKFGVD---TVIAGGGDGTI 70 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCC--EEEEEEec--Cc-ccH---HHHHHHHHhcCCC---EEEEECCCChH
Confidence 5788898884332 256778889998884 33322211 11 111 2223344445666 8888877 888
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCC
Q 013271 191 GDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 191 ~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
..++..+... ....|+-.||.-
T Consensus 71 ~~v~~~l~~~-~~~~~lgiiP~G 92 (293)
T TIGR00147 71 NEVVNALIQL-DDIPALGILPLG 92 (293)
T ss_pred HHHHHHHhcC-CCCCcEEEEcCc
Confidence 8888766321 223466669965
No 74
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=89.09 E-value=2.5 Score=42.00 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=51.0
Q ss_pred EEEEECCCchh-HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHHHHH
Q 013271 118 VLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCG 195 (446)
Q Consensus 118 vliVtd~~v~~-~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D~aK 195 (446)
+++|.++.... ....++.+.|.+.|+ +++.+... .-....++.+++.+.+.| .||++|| |++..++-
T Consensus 2 ~~~I~N~~~~~~~~~~~~~~~l~~~g~--~~~v~~t~------~~~~a~~~a~~~~~~~~d---~vv~~GGDGTi~ev~n 70 (293)
T TIGR03702 2 ALLILNGKQADNEDVREAVGDLRDEGI--QLHVRVTW------EKGDAQRYVAEALALGVS---TVIAGGGDGTLREVAT 70 (293)
T ss_pred EEEEEeCCccchhHHHHHHHHHHHCCC--eEEEEEec------CCCCHHHHHHHHHHcCCC---EEEEEcCChHHHHHHH
Confidence 45666654322 245567778988885 33322211 112234455555566666 8999988 77777776
Q ss_pred HHHHhh-cCCCeEEEEcCCcCcccc
Q 013271 196 YAAASY-LRGVSFIQIPTTVMAQVD 219 (446)
Q Consensus 196 ~iAa~~-~~g~p~i~IPTTl~A~td 219 (446)
.+...- ...+|+-.||.- ++.|
T Consensus 71 gl~~~~~~~~~~lgiiP~G--TgNd 93 (293)
T TIGR03702 71 ALAQIRDDAAPALGLLPLG--TAND 93 (293)
T ss_pred HHHhhCCCCCCcEEEEcCC--chhH
Confidence 553211 124689999966 4444
No 75
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=88.06 E-value=3.5 Score=41.49 Aligned_cols=89 Identities=27% Similarity=0.393 Sum_probs=54.1
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCC-CCcHHHHHHHHHHHHHcC----CCCcceEEEEcCc
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN-YKNMDTLMKVFDKAIESR----LDRRCTFVALGGG 188 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~-~~t~~~v~~~~~~~~~~~----~dr~~~IIAiGGG 188 (446)
..+++-|||.++... ...+...+.+.+. .+++.++|.-.. ......+-+.++.+.+.+ +| -+||+=|||
T Consensus 13 ~p~~I~vITs~~gAa--~~D~~~~~~~r~~--~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~D--viii~RGGG 86 (319)
T PF02601_consen 13 FPKRIAVITSPTGAA--IQDFLRTLKRRNP--IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFD--VIIIIRGGG 86 (319)
T ss_pred CCCEEEEEeCCchHH--HHHHHHHHHHhCC--CcEEEEEeccccccchHHHHHHHHHHHHhcccccccc--EEEEecCCC
Confidence 468999999987653 3556666666653 234445544221 124455666666665544 44 478888999
Q ss_pred cHHHHHHH-----HHHhhcCCCeEE
Q 013271 189 VIGDMCGY-----AAASYLRGVSFI 208 (446)
Q Consensus 189 sv~D~aK~-----iAa~~~~g~p~i 208 (446)
|.-|+.-| +-+.+...+|+|
T Consensus 87 s~eDL~~FN~e~varai~~~~~Pvi 111 (319)
T PF02601_consen 87 SIEDLWAFNDEEVARAIAASPIPVI 111 (319)
T ss_pred ChHHhcccChHHHHHHHHhCCCCEE
Confidence 99998754 122345566654
No 76
>PRK13059 putative lipid kinase; Reviewed
Probab=87.76 E-value=5.4 Score=39.78 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=53.6
Q ss_pred CEEEEEECCCchh----HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccH
Q 013271 116 KKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVI 190 (446)
Q Consensus 116 k~vliVtd~~v~~----~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv 190 (446)
+|+++|.++.... ...+++.+.|.+.|. ++..+.... . ...+... ...+.++| .||++|| |++
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~--~~~~~~~~~--~----~~~~~~~-~~~~~~~d---~vi~~GGDGTv 69 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGY--LVVPYRISL--E----YDLKNAF-KDIDESYK---YILIAGGDGTV 69 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCc--EEEEEEccC--c----chHHHHH-HHhhcCCC---EEEEECCccHH
Confidence 4688888876542 245678888998883 433332221 1 1122222 33445666 8999988 667
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCcCcccc
Q 013271 191 GDMCGYAAASYLRGVSFIQIPTTVMAQVD 219 (446)
Q Consensus 191 ~D~aK~iAa~~~~g~p~i~IPTTl~A~td 219 (446)
-.++..++. ...++|+-.||.- ++.|
T Consensus 70 ~evv~gl~~-~~~~~~lgviP~G--TgNd 95 (295)
T PRK13059 70 DNVVNAMKK-LNIDLPIGILPVG--TAND 95 (295)
T ss_pred HHHHHHHHh-cCCCCcEEEECCC--CHhH
Confidence 777765532 1346899999965 4444
No 77
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=87.15 E-value=10 Score=36.27 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=56.4
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
.+++.+|=+.++.. .|.+++++.|++.|+ ++....+ . .++.+.+++-+.+ .| +|.||||-.=
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~--~v~~L~l--~--~~~~~~Ie~~l~~-----~d----~IyVgGGNTF 96 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGL--EVSELHL--S--KPPLAAIENKLMK-----AD----IIYVGGGNTF 96 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCC--eeeeeec--c--CCCHHHHHHhhhh-----cc----EEEECCchHH
Confidence 45888887765533 289999999999994 3332222 2 3466777765532 36 9999999999
Q ss_pred HHHHHHHH---------hhcCCCeEEEE
Q 013271 192 DMCGYAAA---------SYLRGVSFIQI 210 (446)
Q Consensus 192 D~aK~iAa---------~~~~g~p~i~I 210 (446)
++-+-.-. ..++|+|+|-+
T Consensus 97 ~LL~~lke~gld~iIr~~vk~G~~YiG~ 124 (224)
T COG3340 97 NLLQELKETGLDDIIRERVKAGTPYIGW 124 (224)
T ss_pred HHHHHHHHhCcHHHHHHHHHcCCceEEe
Confidence 98875432 24689999876
No 78
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=85.80 E-value=6.4 Score=39.54 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=59.0
Q ss_pred CCEEEEEECCCch----hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCc-c
Q 013271 115 GKKVLVVTNNTVA----PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGG-V 189 (446)
Q Consensus 115 ~k~vliVtd~~v~----~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGG-s 189 (446)
.+++.++.++... +.+.+++.+.|++.|. ++...... + + ....++++.+...+.| .||+.||= +
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~--~~~~~~t~--~--~--g~a~~~a~~a~~~~~D---~via~GGDGT 70 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAGH--ELSVRVTE--E--A--GDAIEIAREAAVEGYD---TVIAAGGDGT 70 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcCC--eEEEEEee--c--C--ccHHHHHHHHHhcCCC---EEEEecCcch
Confidence 3677888776544 3488999999999983 44333322 1 1 5667777777777888 88888884 4
Q ss_pred HHHHHHHHHHhhcCCCe-EEEEcCCcCcccc
Q 013271 190 IGDMCGYAAASYLRGVS-FIQIPTTVMAQVD 219 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p-~i~IPTTl~A~td 219 (446)
+--++-. .+.++.| +-.||+- ++.|
T Consensus 71 v~eving---l~~~~~~~LgilP~G--T~Nd 96 (301)
T COG1597 71 VNEVANG---LAGTDDPPLGILPGG--TAND 96 (301)
T ss_pred HHHHHHH---HhcCCCCceEEecCC--chHH
Confidence 4445533 4556666 8889966 4444
No 79
>PRK03202 6-phosphofructokinase; Provisional
Probab=82.06 E-value=5.3 Score=40.56 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
++.+..+++++.++++++| .+|.|||--.++.|..++ ..++|+|.||=|.
T Consensus 77 ~~~~~~~~~~~~l~~~~Id---~Li~IGGd~s~~~a~~L~---e~~i~vigiPkTI 126 (320)
T PRK03202 77 KDEEGRAKAIENLKKLGID---ALVVIGGDGSYMGAKRLT---EHGIPVIGLPGTI 126 (320)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCChHHHHHHHHHH---hcCCcEEEecccc
Confidence 3568899999999999999 999999999999987765 3489999999995
No 80
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=81.92 E-value=9.6 Score=34.93 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=50.8
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHH
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 193 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~ 193 (446)
.++++-+|.-++...- .+.+.+.|. +++..+.+. +.++++..++.+++.|+| +| ||||.+.++
T Consensus 76 ~~~~Iavv~~~~~~~~-~~~~~~ll~-----~~i~~~~~~------~~~e~~~~i~~~~~~G~~---vi--VGg~~~~~~ 138 (176)
T PF06506_consen 76 YGPKIAVVGYPNIIPG-LESIEELLG-----VDIKIYPYD------SEEEIEAAIKQAKAEGVD---VI--VGGGVVCRL 138 (176)
T ss_dssp CTSEEEEEEESS-SCC-HHHHHHHHT------EEEEEEES------SHHHHHHHHHHHHHTT-----EE--EESHHHHHH
T ss_pred cCCcEEEEecccccHH-HHHHHHHhC-----CceEEEEEC------CHHHHHHHHHHHHHcCCc---EE--ECCHHHHHH
Confidence 4678888877665432 455555562 244555554 678999999999999999 44 678888888
Q ss_pred HHHHHHhhcCCCeEEEEcCC
Q 013271 194 CGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 194 aK~iAa~~~~g~p~i~IPTT 213 (446)
|+ ..|+|.+.|-++
T Consensus 139 A~------~~gl~~v~i~sg 152 (176)
T PF06506_consen 139 AR------KLGLPGVLIESG 152 (176)
T ss_dssp HH------HTTSEEEESS--
T ss_pred HH------HcCCcEEEEEec
Confidence 85 358998887554
No 81
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=80.90 E-value=0.62 Score=46.34 Aligned_cols=87 Identities=18% Similarity=0.271 Sum_probs=52.6
Q ss_pred EEEEEECCCchhH--HHHHHHHHHhcC-CCCeeEEEEEeCCC-CC--C---------------CcHHHHHHHHHHHHHcC
Q 013271 117 KVLVVTNNTVAPL--YLDKVTDALTRG-NPNVSVENVILPDG-EN--Y---------------KNMDTLMKVFDKAIESR 175 (446)
Q Consensus 117 ~vliVtd~~v~~~--~~~~v~~~L~~~-gi~~~v~~~i~~~g-e~--~---------------~t~~~v~~~~~~~~~~~ 175 (446)
|+.||+++.-.+. ..+++.+.|.+. + +.+ ..-... +. . .+.+..........+.+
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~--~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQG--IEV--LVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEG 76 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTT--EEE--EEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCC--EEE--EEChHHHHHHHHhccccccccccccccccccccchhhhhhcccC
Confidence 5778888875443 678888888887 5 222 111100 00 0 00001112234445678
Q ss_pred CCCcceEEEEcC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 176 LDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 176 ~dr~~~IIAiGG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+| +||.+|| |+.+++++... ...+|++.|+|.
T Consensus 77 ~D---~ii~lGGDGT~L~~~~~~~---~~~~Pilgin~G 109 (285)
T PF01513_consen 77 VD---LIIVLGGDGTFLRAARLFG---DYDIPILGINTG 109 (285)
T ss_dssp SS---EEEEEESHHHHHHHHHHCT---TST-EEEEEESS
T ss_pred CC---EEEEECCCHHHHHHHHHhc---cCCCcEEeecCC
Confidence 88 9999999 99999998752 358999999975
No 82
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=79.86 E-value=8.7 Score=39.00 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
++.+..+++++.++++++| .+|.|||--.++.|..++- .++|+|.||-|.
T Consensus 76 ~~~~~~~~~~~~l~~~~Id---~Li~IGGdgs~~~a~~L~e---~~i~vigiPkTI 125 (317)
T cd00763 76 KDEEGQAKAIEQLKKHGID---ALVVIGGDGSYMGAMRLTE---HGFPCVGLPGTI 125 (317)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEECCchHHHHHHHHHH---cCCCEEEecccc
Confidence 4678899999999999999 9999999999999976643 379999999995
No 83
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=79.71 E-value=8.6 Score=38.75 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
+.+..+++++.++++++| .+|.|||--.++.|..++-. .++|+|.||=|.
T Consensus 76 ~~~~~~~~~~~l~~~~Id---~Li~IGGdgs~~~a~~L~e~--~~i~vigiPkTI 125 (301)
T TIGR02482 76 TEEGRQKAVENLKKLGIE---GLVVIGGDGSYTGAQKLYEE--GGIPVIGLPGTI 125 (301)
T ss_pred CHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHh--hCCCEEeecccc
Confidence 567899999999999999 99999999999988776432 589999999994
No 84
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=78.43 E-value=23 Score=30.42 Aligned_cols=87 Identities=21% Similarity=0.181 Sum_probs=47.2
Q ss_pred EEEEEECCCchhHH--HHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHHH
Q 013271 117 KVLVVTNNTVAPLY--LDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDM 193 (446)
Q Consensus 117 ~vliVtd~~v~~~~--~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D~ 193 (446)
|++||.++.....- .+++.+.|...+. .+.++... .....+.+.+ .. ..... .+.||++|| |++.++
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~~~--~~~~~~t~---~~~~~~~~~~-~~--~~~~~--~~~ivv~GGDGTl~~v 70 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAAGI--DYEVIETE---SAGHAEALAR-IL--ALDDY--PDVIVVVGGDGTLNEV 70 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHTTC--EEEEEEES---STTHHHHHHH-HH--HHTTS---SEEEEEESHHHHHHH
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHcCC--ceEEEEEe---ccchHHHHHH-HH--hhccC--ccEEEEEcCccHHHHH
Confidence 57788887665442 2688889998884 34333332 1112233333 22 22222 138888887 777787
Q ss_pred HHHHHHhhc-CCCeEEEEcCC
Q 013271 194 CGYAAASYL-RGVSFIQIPTT 213 (446)
Q Consensus 194 aK~iAa~~~-~g~p~i~IPTT 213 (446)
+..+..... ..+|+..||.-
T Consensus 71 v~~l~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 71 VNGLMGSDREDKPPLGIIPAG 91 (130)
T ss_dssp HHHHCTSTSSS--EEEEEE-S
T ss_pred HHHHhhcCCCccceEEEecCC
Confidence 766522111 13499999955
No 85
>PRK13057 putative lipid kinase; Reviewed
Probab=77.51 E-value=19 Score=35.59 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHHHHHHHHHhhcCCCeEE
Q 013271 130 YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFI 208 (446)
Q Consensus 130 ~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D~aK~iAa~~~~g~p~i 208 (446)
..+++.+.|.+.|+ ++. .+.. +......++.+. .+.+.| .||++|| |++..++-.+ ...++|+-
T Consensus 14 ~~~~i~~~l~~~g~--~~~--~~~t----~~~~~a~~~~~~-~~~~~d---~iiv~GGDGTv~~v~~~l---~~~~~~lg 78 (287)
T PRK13057 14 ALAAARAALEAAGL--ELV--EPPA----EDPDDLSEVIEA-YADGVD---LVIVGGGDGTLNAAAPAL---VETGLPLG 78 (287)
T ss_pred hHHHHHHHHHHcCC--eEE--EEec----CCHHHHHHHHHH-HHcCCC---EEEEECchHHHHHHHHHH---hcCCCcEE
Confidence 56788899999884 332 2221 123445555554 345566 8888888 7777777555 34679999
Q ss_pred EEcCC
Q 013271 209 QIPTT 213 (446)
Q Consensus 209 ~IPTT 213 (446)
.||.-
T Consensus 79 iiP~G 83 (287)
T PRK13057 79 ILPLG 83 (287)
T ss_pred EECCC
Confidence 99965
No 86
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.31 E-value=7.3 Score=39.11 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=50.3
Q ss_pred CCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCC---CCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-c
Q 013271 115 GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGE---NYKNMDTLMKVFDKAIESRLDRRCTFVALGG-G 188 (446)
Q Consensus 115 ~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge---~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-G 188 (446)
.+++.||....-... ..+++.+.|++.++ ++. +.+... +........ ......++| +||++|| |
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~~gi--ev~--v~~~~~~~~~~~~~~~~~---~~~~~~~~d---~vi~~GGDG 73 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLDRGL--EVI--LDEETAEVLPGHGLQTVS---RKLLGEVCD---LVIVVGGDG 73 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCC--EEE--EecchhhhcCcccccccc---hhhcccCCC---EEEEEeCcH
Confidence 457888877655443 68889888988884 332 222100 000000000 011123456 9999998 6
Q ss_pred cHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 189 VIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 189 sv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+++.++... ...++|++.|.+.
T Consensus 74 t~l~~~~~~---~~~~~Pvlgin~G 95 (295)
T PRK01231 74 SLLGAARAL---ARHNVPVLGINRG 95 (295)
T ss_pred HHHHHHHHh---cCCCCCEEEEeCC
Confidence 788887654 2468899988864
No 87
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.37 E-value=13 Score=37.51 Aligned_cols=83 Identities=12% Similarity=0.158 Sum_probs=50.1
Q ss_pred CCEEEEEECCCchh--HHHHHHHHHHhcCCCCeeEEEEEeCC-CCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccH
Q 013271 115 GKKVLVVTNNTVAP--LYLDKVTDALTRGNPNVSVENVILPD-GENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVI 190 (446)
Q Consensus 115 ~k~vliVtd~~v~~--~~~~~v~~~L~~~gi~~~v~~~i~~~-ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv 190 (446)
.+++++|..+.-.+ ...+++.+.|++.|+ ++. +... .+..+. .... .....++| ++|++|| |++
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~--~v~--v~~~~~~~~~~----~~~~-~~~~~~~d---~vi~~GGDGT~ 70 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGC--KVL--MGPSGPKDNPY----PVFL-ASASELID---LAIVLGGDGTV 70 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCC--EEE--EecCchhhccc----cchh-hccccCcC---EEEEECCcHHH
Confidence 46889998875433 267888888988884 432 2221 111111 1111 11122455 8999988 677
Q ss_pred HHHHHHHHHhhcCCCeEEEEcC
Q 013271 191 GDMCGYAAASYLRGVSFIQIPT 212 (446)
Q Consensus 191 ~D~aK~iAa~~~~g~p~i~IPT 212 (446)
+.++... ...++|++.|.+
T Consensus 71 l~~~~~~---~~~~~pv~gin~ 89 (305)
T PRK02645 71 LAAARHL---APHDIPILSVNV 89 (305)
T ss_pred HHHHHHh---ccCCCCEEEEec
Confidence 7777654 246899999998
No 88
>PRK00861 putative lipid kinase; Reviewed
Probab=75.11 E-value=19 Score=35.74 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=54.2
Q ss_pred CEEEEEECCCchh----HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccH
Q 013271 116 KKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVI 190 (446)
Q Consensus 116 k~vliVtd~~v~~----~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv 190 (446)
+++++|.++.... ...+++...|++. + +++.+.... + ....++.+.+.+.+.| .||++|| |++
T Consensus 3 ~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~-~--~~~~~~t~~--~----~~a~~~a~~~~~~~~d---~vv~~GGDGTl 70 (300)
T PRK00861 3 RSACLIFNPVAGQGNPEVDLALIRAILEPE-M--DLDIYLTTP--E----IGADQLAQEAIERGAE---LIIASGGDGTL 70 (300)
T ss_pred ceEEEEECCCCCCCchhhhHHHHHHHHHhc-C--ceEEEEccC--C----CCHHHHHHHHHhcCCC---EEEEECChHHH
Confidence 5788888876532 2457777788763 3 333332221 1 2334555555666777 8888887 667
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCcCcccc
Q 013271 191 GDMCGYAAASYLRGVSFIQIPTTVMAQVD 219 (446)
Q Consensus 191 ~D~aK~iAa~~~~g~p~i~IPTTl~A~td 219 (446)
..++..+ ...++|+-.||.- ++.|
T Consensus 71 ~evv~~l---~~~~~~lgviP~G--TgNd 94 (300)
T PRK00861 71 SAVAGAL---IGTDIPLGIIPRG--TANA 94 (300)
T ss_pred HHHHHHH---hcCCCcEEEEcCC--chhH
Confidence 7776554 3457899999965 5555
No 89
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=74.72 E-value=46 Score=33.03 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=58.4
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
++++.. +.+++.++++..-+.. ..+.+.+.+++.|+.+. ....++.+. +.......++.+++.+.+ +||..
T Consensus 153 ~~~~~~-~~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~-~~~~~~~~~---~~~d~~~~l~~l~~~~~~---vvv~~ 224 (348)
T cd06350 153 ALLKHF-GWTWVGLVYSDDDYGRSGLSDLEEELEKNGICIA-FVEAIPPSS---TEEDIKRILKKLKSSTAR---VIVVF 224 (348)
T ss_pred HHHHHC-CCeEEEEEEecchhHHHHHHHHHHHHHHCCCcEE-EEEEccCCC---cHHHHHHHHHHHHhCCCc---EEEEE
Confidence 455544 4688888887665444 78889899999986432 223333221 245677888888888887 88888
Q ss_pred cCccHHHHHHHHHHhhcCCC
Q 013271 186 GGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g~ 205 (446)
+.+ -|+..++......|+
T Consensus 225 ~~~--~~~~~~~~~a~~~g~ 242 (348)
T cd06350 225 GDE--DDALRLFCEAYKLGM 242 (348)
T ss_pred eCc--HHHHHHHHHHHHhCC
Confidence 776 466666655555544
No 90
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=74.27 E-value=9.7 Score=38.11 Aligned_cols=87 Identities=23% Similarity=0.225 Sum_probs=50.1
Q ss_pred CCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCC-CCCCCcHHHHHH-HHHHHHHcCCCCcceEEEEcC-cc
Q 013271 115 GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPD-GENYKNMDTLMK-VFDKAIESRLDRRCTFVALGG-GV 189 (446)
Q Consensus 115 ~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~-ge~~~t~~~v~~-~~~~~~~~~~dr~~~IIAiGG-Gs 189 (446)
.+++.|+....-.+. ..+++.+.|++.|+ ++. +... .+.... ..... ..+. ...++| +||++|| |+
T Consensus 5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~--~v~--v~~~~~~~~~~-~~~~~~~~~~-~~~~~d---~vi~~GGDGt 75 (291)
T PRK02155 5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGF--EVV--FEADTARNIGL-TGYPALTPEE-IGARAD---LAVVLGGDGT 75 (291)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCC--EEE--EecchhhhcCc-ccccccChhH-hccCCC---EEEEECCcHH
Confidence 467888877655443 68889999998884 332 2111 000000 00000 0011 123456 9999998 78
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 190 IGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
++.++...+ ..++|++.|.+.
T Consensus 76 ~l~~~~~~~---~~~~pilGIn~G 96 (291)
T PRK02155 76 MLGIGRQLA---PYGVPLIGINHG 96 (291)
T ss_pred HHHHHHHhc---CCCCCEEEEcCC
Confidence 888877542 468898888754
No 91
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=74.12 E-value=8.9 Score=39.25 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh---cCCCeEEEEcCCc
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTV 214 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~---~~g~p~i~IPTTl 214 (446)
+.+..+++++.++++++| .+|.|||--.++.|..++-.+ ..++|+|.||=|.
T Consensus 77 ~~~~~~~~~~~l~~~~I~---~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTI 131 (338)
T cd00363 77 TEEGRAKAAENLKKHGID---ALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTI 131 (338)
T ss_pred CHHHHHHHHHHHHHhCCC---EEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecc
Confidence 567889999999999999 999999999999998775432 2379999999995
No 92
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=73.73 E-value=47 Score=27.40 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=49.4
Q ss_pred CCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHH
Q 013271 115 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 193 (446)
Q Consensus 115 ~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~ 193 (446)
.++++++++.++.-. ..+++.+.+++.|++++++ -. +...+.... ..+| +|=+|--..--.
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~--a~-------~~~~~~~~~-----~~~D----vill~pqi~~~~ 64 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIA--AG-------SYGAAGEKL-----DDAD----VVLLAPQVAYML 64 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEE--Ee-------cHHHHHhhc-----CCCC----EEEECchHHHHH
Confidence 478999999987765 7899999999999644332 21 333333322 2456 444554444333
Q ss_pred HHHHHHhhcCCCeEEEEcCC
Q 013271 194 CGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 194 aK~iAa~~~~g~p~i~IPTT 213 (446)
.++-...-..++|+..||..
T Consensus 65 ~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 65 PDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred HHHHHHhhhcCCCEEEeChh
Confidence 33222222457899999876
No 93
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=73.54 E-value=6.1 Score=39.39 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
+.+...++++.++++++| .+|.|||--.++.|..++- ..++|+|.||-|.
T Consensus 77 ~~~~~~~~~~~l~~~~Id---~Li~IGG~gs~~~a~~L~~--~~~i~vigiPkTI 126 (282)
T PF00365_consen 77 DPEGRKKIVENLKKLGID---ALIVIGGDGSMKGAHKLSE--EFGIPVIGIPKTI 126 (282)
T ss_dssp SHHHHHHHHHHHHHTTES---EEEEEESHHHHHHHHHHHH--HHHSEEEEEEEET
T ss_pred chhhhhhHHHHHHHhCCC---EEEEecCCCHHHHHHHHHh--cCceEEEEEeccc
Confidence 456677899999999999 9999999999999988853 2349999999994
No 94
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=73.14 E-value=9 Score=39.00 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
.+..+++++.+++.++| .+|-|||--.++.|..++ ..++|+|.||-|.
T Consensus 80 ~~~~~~~~~~l~~~~Id---~LivIGGdgS~~~a~~L~---~~gi~vigiPkTI 127 (324)
T TIGR02483 80 EDGDDKIVANLKELGLD---ALIAIGGDGTLGIARRLA---DKGLPVVGVPKTI 127 (324)
T ss_pred HHHHHHHHHHHHHcCCC---EEEEECCchHHHHHHHHH---hcCCCEEeecccc
Confidence 46899999999999999 999999999999987664 3579999999995
No 95
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=72.94 E-value=31 Score=35.96 Aligned_cols=78 Identities=15% Similarity=0.029 Sum_probs=47.6
Q ss_pred cchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCH-------------HHHHHHHHHHHHcCCCCCCCCCCC
Q 013271 328 LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDD-------------SIVKRVHNILQQAKLPTAPPDTMT 394 (446)
Q Consensus 328 ~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~-------------~~~~~i~~ll~~lGlP~~~~~~i~ 394 (446)
.+..++|+|++. . .-.|+..-+.++.+.+-...++..-.. +..+++.++.+.+|++.. .+.-.
T Consensus 258 ~~lg~~Hal~h~--l-~~~~~i~HG~a~ai~lp~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~lg~~~~-~~~~~ 333 (398)
T cd08178 258 AFLGICHSMAHK--L-GAEFHIPHGLANAILLPHVIRYNATDPPVKQAAFPQYKYPKAKERYAEIARFLGLPGK-TDEEK 333 (398)
T ss_pred cchhhhhhhhhh--h-ccCCCCChHHHHHHHHHHHHHhhcccccccccccccccccchHHHHHHHHHHcCCCCC-CHHHH
Confidence 356788999876 3 456666666665555544445442111 125788889999999843 21123
Q ss_pred HHHHHHHHHHhHhhc
Q 013271 395 VEMFKSIMAVDKKVA 409 (446)
Q Consensus 395 ~e~~~~~l~~dkk~~ 409 (446)
.+++.+.+...++..
T Consensus 334 ~~~~~~~i~~l~~~l 348 (398)
T cd08178 334 VESLIKAIEELKKKL 348 (398)
T ss_pred HHHHHHHHHHHHHHc
Confidence 456777788877653
No 96
>PRK14072 6-phosphofructokinase; Provisional
Probab=72.93 E-value=9.9 Score=40.09 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh-cCC--CeEEEEcCCc
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRG--VSFIQIPTTV 214 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~-~~g--~p~i~IPTTl 214 (446)
+.+..+++++.++++++| .+|.|||--.++.|..++-.. ..+ +|+|.||=|.
T Consensus 88 ~~~~~~~~~~~l~~~~Id---~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTI 142 (416)
T PRK14072 88 DRAEYERLLEVFKAHDIG---YFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTI 142 (416)
T ss_pred ChHHHHHHHHHHHHcCCC---EEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecc
Confidence 567899999999999999 999999999999998775321 134 9999999995
No 97
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=72.81 E-value=43 Score=28.20 Aligned_cols=82 Identities=17% Similarity=0.189 Sum_probs=51.8
Q ss_pred CEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHH
Q 013271 116 KKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 194 (446)
Q Consensus 116 k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~a 194 (446)
+|+|++++.+..-. ..+++.+.+++.|+++++ .-. +...+.. .....++| +|-+|--...-..
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i--~a~-------~~~e~~~---~~~~~~~D----vIll~PQi~~~~~ 65 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEV--DAI-------TATEGEK---AIAAAEYD----LYLVSPQTKMYFK 65 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEE--EEe-------cHHHHHH---hhccCCCC----EEEEChHHHHHHH
Confidence 57999999988665 789999999999964332 221 2233332 22334567 5666666554444
Q ss_pred HHHHHhhcCCCeEEEEcCC
Q 013271 195 GYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 195 K~iAa~~~~g~p~i~IPTT 213 (446)
.+-..+-..++|+..||..
T Consensus 66 ~i~~~~~~~~ipv~~I~~~ 84 (104)
T PRK09590 66 QFEEAGAKVGKPVVQIPPQ 84 (104)
T ss_pred HHHHHhhhcCCCEEEeCHH
Confidence 4433233468999999876
No 98
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=72.20 E-value=10 Score=41.52 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=45.1
Q ss_pred CCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhc-CC--CeEEEEcCCc
Q 013271 158 YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-RG--VSFIQIPTTV 214 (446)
Q Consensus 158 ~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~-~g--~p~i~IPTTl 214 (446)
-.+.+..+++++.+++.++| .+|-|||--.++.|..++-.+. .+ +++|.||-|.
T Consensus 173 ~~~~e~~~~~~~~l~~l~Id---~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTI 229 (568)
T PLN02251 173 IETPEQFKQAEETATKLDLD---GLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTI 229 (568)
T ss_pred cCCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceE
Confidence 34678899999999999999 9999999999998877764322 34 9999999996
No 99
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=71.34 E-value=10 Score=41.31 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=45.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh---cCCCeEEEEcCCc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTV 214 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~---~~g~p~i~IPTTl 214 (446)
++.+..+++++.+++.++| .+|-|||--.++.|..++-.+ ..++++|.||-|.
T Consensus 145 ~~~e~~~~~~~~l~~~~Id---~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTI 200 (539)
T TIGR02477 145 ETEEQFAKALTTAKKLKLD---GLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTI 200 (539)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeee
Confidence 4678999999999999999 999999999999887776432 2359999999995
No 100
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=71.28 E-value=10 Score=41.33 Aligned_cols=53 Identities=23% Similarity=0.401 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhc-CC--CeEEEEcCCc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-RG--VSFIQIPTTV 214 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~-~g--~p~i~IPTTl 214 (446)
++.+..+++.+.+++.++| .+|-|||--.++.|..++-.+. ++ +++|.||-|.
T Consensus 150 ~~~e~~~~i~~~l~~~~Id---~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTI 205 (550)
T cd00765 150 ETEDQFKQAEETAKKLDLD---ALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTI 205 (550)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeee
Confidence 4668899999999999999 9999999999998877764322 34 8999999996
No 101
>PRK12361 hypothetical protein; Provisional
Probab=71.00 E-value=26 Score=38.11 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=56.2
Q ss_pred CCEEEEEECCCchh----HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-cc
Q 013271 115 GKKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GV 189 (446)
Q Consensus 115 ~k~vliVtd~~v~~----~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gs 189 (446)
.+++++|.++.... ...+++.+.|.+. + +++++ ..... ....++.+++.+.++| .||++|| |+
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~-~--~~~v~--~t~~~----~~a~~la~~~~~~~~d---~Viv~GGDGT 309 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAY-F--DLTVK--LTTPE----ISAEALAKQARKAGAD---IVIACGGDGT 309 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcC-C--ceEEE--ECCCC----ccHHHHHHHHHhcCCC---EEEEECCCcH
Confidence 46889999976532 3678888888775 3 33322 21111 2345566666666777 8888877 77
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcCcccc
Q 013271 190 IGDMCGYAAASYLRGVSFIQIPTTVMAQVD 219 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p~i~IPTTl~A~td 219 (446)
+..++-.+ ...++|+-.||.- +++|
T Consensus 310 l~ev~~~l---~~~~~~lgiiP~G--TgNd 334 (547)
T PRK12361 310 VTEVASEL---VNTDITLGIIPLG--TANA 334 (547)
T ss_pred HHHHHHHH---hcCCCCEEEecCC--chhH
Confidence 77777554 3467899999966 4444
No 102
>PRK14071 6-phosphofructokinase; Provisional
Probab=70.00 E-value=11 Score=38.92 Aligned_cols=49 Identities=22% Similarity=0.349 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
.+..+++++.++++++| .+|.|||--.++.++.++- ..++|+|.||=|.
T Consensus 93 ~~~~~~~~~~l~~~~Id---~Li~IGGdgS~~~a~~L~~--~~~i~vIgiPkTI 141 (360)
T PRK14071 93 RDRSQEIIDGYHSLGLD---ALIGIGGDGSLAILRRLAQ--QGGINLVGIPKTI 141 (360)
T ss_pred hHHHHHHHHHHHHcCCC---EEEEECChhHHHHHHHHHH--hcCCcEEEecccc
Confidence 35778999999999999 9999999999998877642 2399999999995
No 103
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=69.60 E-value=11 Score=41.66 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=46.5
Q ss_pred CCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh---cCCCeEEEEcCCcC
Q 013271 158 YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTVM 215 (446)
Q Consensus 158 ~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~---~~g~p~i~IPTTl~ 215 (446)
-++.+..+++++.+++.++| .+|-|||--.++.|..+|-.+ ..++++|.||-|.-
T Consensus 156 l~~~e~~~~i~e~l~~l~Id---~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTID 213 (610)
T PLN03028 156 IRTTEQVNAALAACEALKLD---GLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLN 213 (610)
T ss_pred cCCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeee
Confidence 45678999999999999999 999999999999887776432 23799999999964
No 104
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=69.10 E-value=11 Score=41.23 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh---cCCCeEEEEcCCcC
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTVM 215 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~---~~g~p~i~IPTTl~ 215 (446)
++.+..+++++.+++.++| .+|-|||--.++.|..++-.+ ..++++|.||-|.-
T Consensus 148 ~~~e~~~~i~~~l~~~~Id---~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTID 204 (555)
T PRK07085 148 ETEEQKEACLETVKKLKLD---GLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTID 204 (555)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeec
Confidence 4778999999999999999 999999999999887775422 34899999999963
No 105
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=68.43 E-value=13 Score=38.95 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh---cCCCeEEEEcCCc
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTV 214 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~---~~g~p~i~IPTTl 214 (446)
.+..+++++.++++++| .+|.|||--.++.|..++... ..++|+|.||=|.
T Consensus 98 ~~~~~~~~~~L~~~~Id---~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTI 151 (403)
T PRK06555 98 ENPLKVAAERLAADGVD---ILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTI 151 (403)
T ss_pred hHHHHHHHHHHHHcCCC---EEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeee
Confidence 45688999999999999 999999999999887765321 2279999999995
No 106
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=67.90 E-value=26 Score=35.99 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=52.6
Q ss_pred HHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcC
Q 013271 133 KVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPT 212 (446)
Q Consensus 133 ~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPT 212 (446)
.+...+...| . ...-....+.++.+..+++++-+++.|+| .+|-|||--....|+.++.. -++|+|.||=
T Consensus 57 ~v~~~~~~GG---T--~lgssR~~~~~~~e~~~~~~~~l~~~gId---~LvvIGGDgS~~gA~~Lae~--~~i~vVGvPk 126 (347)
T COG0205 57 DVDDLINRGG---T--FLGSARFPEFKTEEGRKVAAENLKKLGID---ALVVIGGDGSYTGAALLAEE--GGIPVVGVPK 126 (347)
T ss_pred chhHHHhcCC---e--EEeeCCCCCcccHHHHHHHHHHHHHcCCC---EEEEECCCChHHHHHHHHHh--cCCcEEecCC
Confidence 3444556666 1 12112234467888999999999999999 99999998888888777532 3499999999
Q ss_pred Cc
Q 013271 213 TV 214 (446)
Q Consensus 213 Tl 214 (446)
|.
T Consensus 127 TI 128 (347)
T COG0205 127 TI 128 (347)
T ss_pred Cc
Confidence 95
No 107
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=67.87 E-value=23 Score=36.26 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
.|-++-...++.+.+.|+| +|+-+|| |+.=|+++.+ ...+|+..|||.
T Consensus 84 tTa~DT~~~~r~~~~~gVd---lIvfaGGDGTarDVa~av----~~~vPvLGipaG 132 (355)
T COG3199 84 TTAEDTINAVRRMVERGVD---LIVFAGGDGTARDVAEAV----GADVPVLGIPAG 132 (355)
T ss_pred ccHHHHHHHHHHHHhcCce---EEEEeCCCccHHHHHhhc----cCCCceEeeccc
Confidence 4556666677888889999 8777776 8999999765 578999999987
No 108
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=67.36 E-value=18 Score=33.21 Aligned_cols=65 Identities=12% Similarity=0.245 Sum_probs=51.7
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCcc
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 189 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGs 189 (446)
.++++|=.+.++..+..+++.+.-+..|..++|.. | +.|.+.++++.+.++++|+. -+.|+|.-.
T Consensus 4 A~~PVISVNGN~AAL~p~eiveLa~~~~A~iEVNL--F-----yRT~eR~~~I~~~L~~~Ga~---~vlG~~~d~ 68 (178)
T PF02006_consen 4 AKHPVISVNGNTAALVPEEIVELAKATGAKIEVNL--F-----YRTEERVEKIAELLREHGAE---EVLGVNPDA 68 (178)
T ss_pred cCCCEEEEcccHHHhChHHHHHHHHHhCCCEEEEc--c-----cCCHHHHHHHHHHHHHcCCC---EeeccCCcc
Confidence 46788888999999988888886666665455543 3 56889999999999999998 899987654
No 109
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.28 E-value=30 Score=34.76 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=50.4
Q ss_pred CCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCC-C-------CcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 115 GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGEN-Y-------KNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 115 ~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~-~-------~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
.+++.|+....-.+. +.+++.+.|.+.|+ ++. +.+.... . +...... . +.+ ...+| ++|.
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~--~v~--~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~D---~vi~ 74 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQHGF--TVY--LDEVGIKEGCIYTQDTVGCHIVN-K-TEL-GQYCD---LVAV 74 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCC--EEE--Eecccccccchhccccccccccc-h-hhc-CcCCC---EEEE
Confidence 578999987655443 78899999999884 332 2111000 0 0000000 0 111 12456 9999
Q ss_pred EcC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 185 LGG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 185 iGG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+|| |+++-++..++ ..++|++.|.+.
T Consensus 75 lGGDGT~L~aa~~~~---~~~~PilGIN~G 101 (296)
T PRK04539 75 LGGDGTFLSVAREIA---PRAVPIIGINQG 101 (296)
T ss_pred ECCcHHHHHHHHHhc---ccCCCEEEEecC
Confidence 998 77777776542 468899888754
No 110
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=66.93 E-value=49 Score=32.52 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=53.4
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
.++.+..+.+++.++++...+.. +.+.+.+.+++.|+ ++...... .+.-.+....+..+++.++| +||-.
T Consensus 127 ~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~--~v~~~~~~----~~~~~d~~~~l~~i~~~~~~---~vi~~ 197 (334)
T cd06342 127 KYAVETLKAKKVAIIDDKTAYGQGLADEFKKALKAAGG--KVVAREGT----TDGATDFSAILTKIKAANPD---AVFFG 197 (334)
T ss_pred HHHHHhcCCCEEEEEeCCcchhhHHHHHHHHHHHHcCC--EEEEEecC----CCCCccHHHHHHHHHhcCCC---EEEEc
Confidence 34433324688999988876554 67888888888884 43322221 11224566667777888888 77755
Q ss_pred cCccHHHHHHHHHHhhcCCCe
Q 013271 186 GGGVIGDMCGYAAASYLRGVS 206 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g~p 206 (446)
|. .-|.++++-.....|..
T Consensus 198 ~~--~~~~~~~~~~~~~~g~~ 216 (334)
T cd06342 198 GY--YPEAGPLVRQMRQLGLK 216 (334)
T ss_pred Cc--chhHHHHHHHHHHcCCC
Confidence 43 34666666444444443
No 111
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=66.90 E-value=42 Score=36.53 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=46.2
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHH
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 193 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~ 193 (446)
..+++-||.-+++..- .+.+.+.|. +++..+.+. +.++++..++.+++.|++ +|| ||+.+.|+
T Consensus 96 ~~~~ia~vg~~~~~~~-~~~~~~ll~-----~~i~~~~~~------~~~e~~~~~~~l~~~G~~---~vi--G~~~~~~~ 158 (526)
T TIGR02329 96 IASSIGVVTHQDTPPA-LRRFQAAFN-----LDIVQRSYV------TEEDARSCVNDLRARGIG---AVV--GAGLITDL 158 (526)
T ss_pred cCCcEEEEecCcccHH-HHHHHHHhC-----CceEEEEec------CHHHHHHHHHHHHHCCCC---EEE--CChHHHHH
Confidence 3566777766665432 445555553 233444443 668899999999999999 665 99999999
Q ss_pred HHHH
Q 013271 194 CGYA 197 (446)
Q Consensus 194 aK~i 197 (446)
|+-.
T Consensus 159 A~~~ 162 (526)
T TIGR02329 159 AEQA 162 (526)
T ss_pred HHHc
Confidence 9754
No 112
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.65 E-value=25 Score=35.13 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=50.3
Q ss_pred CCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHH
Q 013271 115 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGD 192 (446)
Q Consensus 115 ~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D 192 (446)
.+++.|++...-... +.+++.+.|++.|+ ++ ++ +..+. ..+.....-.+.+ ..++| ++|++|| |+++.
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~--~~--~~-~~~~~-~~~~~~~~~~~~~-~~~~D---lvi~iGGDGT~L~ 79 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKV--EI--LL-EKESA-EILDLPGYGLDEL-FKISD---FLISLGGDGTLIS 79 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCC--EE--EE-ecchh-hhhcccccchhhc-ccCCC---EEEEECCCHHHHH
Confidence 567999988763222 78889999988884 33 22 21110 0000000000111 12466 9999998 77898
Q ss_pred HHHHHHHhhcCCCeEEEEcCC
Q 013271 193 MCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 193 ~aK~iAa~~~~g~p~i~IPTT 213 (446)
++...+ ..++|++.|.+.
T Consensus 80 aa~~~~---~~~~PilGIN~G 97 (287)
T PRK14077 80 LCRKAA---EYDKFVLGIHAG 97 (287)
T ss_pred HHHHhc---CCCCcEEEEeCC
Confidence 887652 458999888754
No 113
>PTZ00287 6-phosphofructokinase; Provisional
Probab=65.61 E-value=25 Score=42.28 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=45.0
Q ss_pred CCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh-cCCCe--EEEEcCCc
Q 013271 158 YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRGVS--FIQIPTTV 214 (446)
Q Consensus 158 ~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~-~~g~p--~i~IPTTl 214 (446)
-++.+..+++++.+++.++| .+|.|||--.+..|..++-.+ ..|+| +|.||-|.
T Consensus 911 f~t~e~~~ka~~~lk~l~ID---~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTI 967 (1419)
T PTZ00287 911 LFDKENRNKVCETVTNLQLN---GLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTG 967 (1419)
T ss_pred CCCHHHHHHHHHHHHHhCCC---EEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCcee
Confidence 35778999999999999999 999999988888777765422 36777 99999995
No 114
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.79 E-value=25 Score=35.48 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=51.3
Q ss_pred CCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCC-----CCcH------HHHHHHHHHHHHcCCCCcce
Q 013271 115 GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGEN-----YKNM------DTLMKVFDKAIESRLDRRCT 181 (446)
Q Consensus 115 ~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~-----~~t~------~~v~~~~~~~~~~~~dr~~~ 181 (446)
.+++.||....-.+. +.+++.+.|.+.|+ ++. +.+.... ++.. ..+.. .+. ...++| +
T Consensus 5 ~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~--~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~D---~ 75 (306)
T PRK03372 5 SRRVLLVAHTGRDEATEAARRVAKQLGDAGI--GVR--VLDAEAVDLGATHPAPDDFRAMEVVDA-DPD-AADGCE---L 75 (306)
T ss_pred ccEEEEEecCCCHHHHHHHHHHHHHHHHCCC--EEE--Eeechhhhhcccccccccccccccccc-hhh-cccCCC---E
Confidence 577999987654333 78899999999884 332 2111000 0000 00000 011 122456 9
Q ss_pred EEEEcC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 182 FVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 182 IIAiGG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
||.+|| |+++-++... ...++|++.|.+.
T Consensus 76 vi~lGGDGT~L~aar~~---~~~~~PilGIN~G 105 (306)
T PRK03372 76 VLVLGGDGTILRAAELA---RAADVPVLGVNLG 105 (306)
T ss_pred EEEEcCCHHHHHHHHHh---ccCCCcEEEEecC
Confidence 999998 8888888764 2468999999864
No 115
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.11 E-value=24 Score=35.01 Aligned_cols=84 Identities=14% Similarity=0.057 Sum_probs=46.7
Q ss_pred EEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCC-CCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH-
Q 013271 117 KVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPD-GENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD- 192 (446)
Q Consensus 117 ~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~-ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D- 192 (446)
|+.||....-.+. ..+++.+.|++.|+ ++.+ ... .+..+...... .+.+.+.++| +||++||=-.+.
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~~g~--~v~v--~~~~~~~~~~~~~~~--~~~~~~~~~d---~vi~iGGDGTlL~ 72 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKVSGY--EVVV--DSETYEHLPEFSEED--VLPLEEMDVD---FIIAIGGDGTILR 72 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCC--EEEE--ecchhhhcCcccccc--cccccccCCC---EEEEEeCcHHHHH
Confidence 4677766554332 78999999999884 4332 211 00001000000 0111223566 999999955544
Q ss_pred HHHHHHHhhcCCCeEEEEcCC
Q 013271 193 MCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 193 ~aK~iAa~~~~g~p~i~IPTT 213 (446)
++. .+..++|++.||+.
T Consensus 73 a~~----~~~~~~pi~gIn~G 89 (277)
T PRK03708 73 IEH----KTKKDIPILGINMG 89 (277)
T ss_pred HHH----hcCCCCeEEEEeCC
Confidence 554 34568999999965
No 116
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=63.73 E-value=31 Score=41.26 Aligned_cols=50 Identities=4% Similarity=0.037 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhc--------CCCeEEEEcCCcC
Q 013271 163 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL--------RGVSFIQIPTTVM 215 (446)
Q Consensus 163 ~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~--------~g~p~i~IPTTl~ 215 (446)
..+.+.+.+++.++| .+|.|||--..-.|..++-.+. .++|+|.||-|.-
T Consensus 788 ~~~~v~~~L~~~~Id---~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTID 845 (1328)
T PTZ00468 788 SNDFLSQLLSFFNMR---AIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLE 845 (1328)
T ss_pred hHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCcccc
Confidence 457788888899999 9999999877777766654332 4899999999964
No 117
>COG2359 SpoVS Stage V sporulation protein SpoVS [Function unknown]
Probab=63.00 E-value=31 Score=27.46 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh--h--cCCCeEEEEcCC
Q 013271 162 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS--Y--LRGVSFIQIPTT 213 (446)
Q Consensus 162 ~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~--~--~~g~p~i~IPTT 213 (446)
.....+...+++.|-- -|=|||-|.+....|.+|.+ | ..|+.++++|--
T Consensus 14 sVAGAlAgvlr~~g~a---EiQAiGagAvNQaVKAiAiaRgflapsGidL~~vPaF 66 (87)
T COG2359 14 SVAGALAGVLRERGKA---EIQAIGAGAVNQAVKAIAIARGFLAPSGIDLVCVPAF 66 (87)
T ss_pred hHHHHHHHHHHhcCce---eeeeechHHHHHHHHHHHHHhhccCccCCcEEEeeee
Confidence 3444555566777665 69999999999999999865 2 468999999944
No 118
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=62.30 E-value=46 Score=33.95 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=52.2
Q ss_pred hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 106 PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 106 ~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
.+++.+..+.|++.+|.+...+.. +.+.+++.|+..|.+ .+....+..+. .++..++.++++.++| +|+.
T Consensus 139 ~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~-~~~~~~~~~~~-----~~~~~~v~~i~~~~~d---~v~~ 209 (366)
T COG0683 139 ADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAALKALGGE-VVVEEVYAPGD-----TDFSALVAKIKAAGPD---AVLV 209 (366)
T ss_pred HHHHHHhcCCcEEEEEeCCCCcchhHHHHHHHHHHhCCCe-EEEEEeeCCCC-----CChHHHHHHHHhcCCC---EEEE
Confidence 345554432348999988888876 899999999999953 22212233222 2288888999999999 7777
Q ss_pred EcCccHHH
Q 013271 185 LGGGVIGD 192 (446)
Q Consensus 185 iGGGsv~D 192 (446)
.|-|.-+-
T Consensus 210 ~~~~~~~~ 217 (366)
T COG0683 210 GGYGPDAA 217 (366)
T ss_pred CCCCccch
Confidence 66555433
No 119
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=61.92 E-value=59 Score=32.92 Aligned_cols=79 Identities=15% Similarity=0.059 Sum_probs=51.7
Q ss_pred CCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 115 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 115 ~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
.+|+.+|++...+.. ..+.+.+.+++.|+ ++.. ..++ +...+....+..++..++| +|+-.+.+. |
T Consensus 140 ~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~--~vv~~~~~~-----~~~~D~~~~v~~i~~~~pd---~V~~~~~~~--~ 207 (351)
T cd06334 140 GKKIALVYHDSPFGKEPIEALKALAEKLGF--EVVLEPVPP-----PGPNDQKAQWLQIRRSGPD---YVILWGWGV--M 207 (351)
T ss_pred CCeEEEEeCCCccchhhHHHHHHHHHHcCC--eeeeeccCC-----CCcccHHHHHHHHHHcCCC---EEEEecccc--h
Confidence 689999988766655 77888889999884 3321 2222 2334566677778888998 887766664 6
Q ss_pred HHHHHHHhhcCCC
Q 013271 193 MCGYAAASYLRGV 205 (446)
Q Consensus 193 ~aK~iAa~~~~g~ 205 (446)
.+.++-.....|.
T Consensus 208 ~~~~~~~~~~~G~ 220 (351)
T cd06334 208 NPVAIKEAKRVGL 220 (351)
T ss_pred HHHHHHHHHHcCC
Confidence 6666544433444
No 120
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.84 E-value=28 Score=34.87 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=49.6
Q ss_pred CCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCC---CCcHHHHHHHHHHHHHcCCCCcceEEEEcC-c
Q 013271 115 GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGEN---YKNMDTLMKVFDKAIESRLDRRCTFVALGG-G 188 (446)
Q Consensus 115 ~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~---~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-G 188 (446)
.+++.|+....-.+. +.+++.+.|++.|+ ++ ++.+.... .+.. ..... +. ...++| ++|++|| |
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~--~v--~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~d---~vi~lGGDG 74 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGY--EV--IVEQQIAHELQLKNV-KTGTL-AE-IGQQAD---LAIVVGGDG 74 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCC--EE--EEecchhhhcCcccc-cccch-hh-cCCCCC---EEEEECCcH
Confidence 577999987655443 78899999998884 33 22111000 0000 00000 11 112456 9999998 7
Q ss_pred cHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 189 VIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 189 sv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+++-++...+ ..++|++.|.+.
T Consensus 75 T~L~aa~~~~---~~~~Pilgin~G 96 (292)
T PRK03378 75 NMLGAARVLA---RYDIKVIGINRG 96 (292)
T ss_pred HHHHHHHHhc---CCCCeEEEEECC
Confidence 7777776542 347898888754
No 121
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=61.58 E-value=1.1e+02 Score=30.00 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=52.1
Q ss_pred CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 114 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
+.+++.+|+....+.. +.+.+.+.+++.|+++ +..+.++.+ .......++.+++.++| +|+..+ ...|
T Consensus 134 g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~v-v~~~~~~~~-----~~d~~~~~~~l~~~~~d---~v~~~~--~~~~ 202 (343)
T PF13458_consen 134 GAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKV-VGEIRYPPG-----DTDFSALVQQLKSAGPD---VVVLAG--DPAD 202 (343)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEE-EEEEEE-TT-----SSHHHHHHHHHHHTTTS---EEEEES--THHH
T ss_pred CCcEEEEEecCchhhhHHHHHHHHHHhhcCcee-ccceecccc-----cccchHHHHHHhhcCCC---EEEEec--cchh
Confidence 4689999988765555 7888999999999531 223344422 25667777888888888 766665 4455
Q ss_pred HHHHHHHhhcCC
Q 013271 193 MCGYAAASYLRG 204 (446)
Q Consensus 193 ~aK~iAa~~~~g 204 (446)
+..++......+
T Consensus 203 ~~~~~~~~~~~~ 214 (343)
T PF13458_consen 203 AAAFLRQLRQLG 214 (343)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc
Confidence 555565443333
No 122
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=61.48 E-value=60 Score=31.94 Aligned_cols=87 Identities=20% Similarity=0.166 Sum_probs=53.7
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
+++.+. +.+|+.++++..-+.. ..+.+++.+++.|+++ +....++.+ ..+....+..+++.++| +|+-.
T Consensus 130 ~~~~~~-~~~~vail~~~~~~g~~~~~~~~~~~~~~G~~v-v~~~~~~~~-----~~d~~~~v~~l~~~~pd---~v~~~ 199 (312)
T cd06346 130 QLAAER-GYKSVATTYINNDYGVGLADAFTKAFEALGGTV-TNVVAHEEG-----KSSYSSEVAAAAAGGPD---ALVVI 199 (312)
T ss_pred HHHHHc-CCCeEEEEEccCchhhHHHHHHHHHHHHcCCEE-EEEEeeCCC-----CCCHHHHHHHHHhcCCC---EEEEe
Confidence 445444 4789998887766654 6788888999988532 122233322 23455666777788888 88766
Q ss_pred cCccHHHHHHHHHHhhcCCC
Q 013271 186 GGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g~ 205 (446)
+.+. |.+.++......|+
T Consensus 200 ~~~~--~~~~~~~~~~~~G~ 217 (312)
T cd06346 200 GYPE--TGSGILRSAYEQGL 217 (312)
T ss_pred cccc--hHHHHHHHHHHcCC
Confidence 5554 66666544444444
No 123
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=60.85 E-value=98 Score=30.26 Aligned_cols=89 Identities=13% Similarity=0.140 Sum_probs=50.4
Q ss_pred hHhhhcCCCCEEEEEECCC-chh-HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNT-VAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~-v~~-~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
+++.+..+.+++.+|++.. -+. ...+.+.+.+++.|+.+ +....++.++ ......+..+++.++| +|+-
T Consensus 127 ~~~~~~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~~~~~~~~-----~d~~~~~~~~~~~~~d---~i~~ 197 (334)
T cd06347 127 KFATENLKAKKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEI-VAEETFNAGD-----TDFSAQLTKIKAKNPD---VIFL 197 (334)
T ss_pred HHHHHhcCCcEEEEEEeCCCchhHHHHHHHHHHHHHcCCEE-EEEEEecCCC-----CcHHHHHHHHHhcCCC---EEEE
Confidence 4443322467888887543 232 35677888888888422 2223344332 2355666667777887 6665
Q ss_pred EcCccHHHHHHHHHHhhcCCCe
Q 013271 185 LGGGVIGDMCGYAAASYLRGVS 206 (446)
Q Consensus 185 iGGGsv~D~aK~iAa~~~~g~p 206 (446)
.+.+. |++.++......|.+
T Consensus 198 ~~~~~--~~~~~~~~~~~~g~~ 217 (334)
T cd06347 198 PGYYT--EVGLIAKQARELGIK 217 (334)
T ss_pred cCchh--hHHHHHHHHHHcCCC
Confidence 55443 666666544444543
No 124
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=60.59 E-value=23 Score=40.17 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh---hc-CCCeEEEEcCCcC---ccccccccCeEEE
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---YL-RGVSFIQIPTTVM---AQVDSSVGGKTGI 228 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~---~~-~g~p~i~IPTTl~---A~tds~v~~k~~i 228 (446)
.+..+++.+.++++++| .+|.|||--..+.|..++.. |. .++|+|.||=|.. .+||-++|.-|++
T Consensus 464 ~~~~~~i~~~l~~~~Id---~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAl 535 (762)
T cd00764 464 KKDLETIAYNFQKYGID---GLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTAL 535 (762)
T ss_pred HHHHHHHHHHHHHcCCC---EEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHH
Confidence 57899999999999999 99999999998888766532 32 6899999999963 2444444433333
No 125
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=60.36 E-value=47 Score=36.31 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=46.0
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHH
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 193 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~ 193 (446)
...++-||+-+++..- .+.+.+.|. +++..+.+. +.++++..++.+++.|++ +|| |||.+.|+
T Consensus 106 ~~~~iavv~~~~~~~~-~~~~~~~l~-----~~i~~~~~~------~~~e~~~~v~~lk~~G~~---~vv--G~~~~~~~ 168 (538)
T PRK15424 106 LTSSIGVVTYQETIPA-LVAFQKTFN-----LRIEQRSYV------TEEDARGQINELKANGIE---AVV--GAGLITDL 168 (538)
T ss_pred cCCcEEEEecCcccHH-HHHHHHHhC-----CceEEEEec------CHHHHHHHHHHHHHCCCC---EEE--cCchHHHH
Confidence 3456777766665432 445555553 233444443 668899999999999999 665 99999999
Q ss_pred HHHH
Q 013271 194 CGYA 197 (446)
Q Consensus 194 aK~i 197 (446)
|+-.
T Consensus 169 A~~~ 172 (538)
T PRK15424 169 AEEA 172 (538)
T ss_pred HHHh
Confidence 9754
No 126
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=60.35 E-value=91 Score=31.31 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=50.9
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
+++.+..+.||+.++++...+.. ..+.+.+.+++.|. ++.. ..++. ...+....+.++++.++| +|+.
T Consensus 125 ~~~~~~~g~k~vaii~~d~~~g~~~~~~~~~~~~~~G~--~vv~~~~~~~-----~~~D~~~~v~~l~~~~pd---~v~~ 194 (348)
T cd06355 125 DWLMSNKGGKRFYLVGSDYVYPRTANKILKAQLESLGG--EVVGEEYLPL-----GHTDFQSIINKIKAAKPD---VVVS 194 (348)
T ss_pred HHHHhccCCCeEEEECCcchHHHHHHHHHHHHHHHcCC--eEEeeEEecC-----ChhhHHHHHHHHHHhCCC---EEEE
Confidence 34444324789999987765554 77888889999884 4322 22221 335667777888888998 7776
Q ss_pred EcCcc-HHHHHHHH
Q 013271 185 LGGGV-IGDMCGYA 197 (446)
Q Consensus 185 iGGGs-v~D~aK~i 197 (446)
.+.|. ...+.|.+
T Consensus 195 ~~~~~~~~~~~~~~ 208 (348)
T cd06355 195 TVNGDSNVAFFKQL 208 (348)
T ss_pred eccCCchHHHHHHH
Confidence 55543 44444443
No 127
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=60.29 E-value=95 Score=25.48 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=46.3
Q ss_pred EEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 117 KVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 117 ~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
|++++++.++.-. ..+++.+.+++.|++++++ .. +...+.. . ..++| +|+ ++- -+.+.-+
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~--~~-------~~~~~~~---~--~~~~D---iil-~~P-qv~~~~~ 61 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIE--AV-------PESELEE---Y--IDDAD---VVL-LGP-QVRYMLD 61 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEE--Ee-------cHHHHHH---h--cCCCC---EEE-ECh-hHHHHHH
Confidence 4889999988765 7899999999999644332 21 3333332 1 13456 444 333 3333333
Q ss_pred HHH-HhhcCCCeEEEEcCC
Q 013271 196 YAA-ASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iA-a~~~~g~p~i~IPTT 213 (446)
-+- ..-..++|+..||..
T Consensus 62 ~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 62 EVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHHhccCCCcEEEcChH
Confidence 232 223568999999866
No 128
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=59.93 E-value=95 Score=29.18 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=52.4
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEE-EeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~-i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
+++......+++.+|++...... ..+.+.+.+++.|+ ++... .++.+ .+.....+..++..+.+ .|+.
T Consensus 127 ~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~--~i~~~~~~~~~-----~~~~~~~~~~l~~~~~~---~vi~ 196 (298)
T cd06268 127 DYLAEKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGG--EVVAEETYPPG-----ATDFSPLIAKLKAAGPD---AVFL 196 (298)
T ss_pred HHHHHhcCCCEEEEEEcCCchhHHHHHHHHHHHHHcCC--EEEEEeccCCC-----CccHHHHHHHHHhcCCC---EEEE
Confidence 44444322688999887654333 67778888888884 33222 22211 13455566666666666 8888
Q ss_pred EcCc-cHHHHHHHHHHhhcCC--CeEEEEcCC
Q 013271 185 LGGG-VIGDMCGYAAASYLRG--VSFIQIPTT 213 (446)
Q Consensus 185 iGGG-sv~D~aK~iAa~~~~g--~p~i~IPTT 213 (446)
.+.+ ....+.+. ....+ ++++...++
T Consensus 197 ~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~ 225 (298)
T cd06268 197 AGYGGDAALFLKQ---AREAGLKVPIVGGDGA 225 (298)
T ss_pred ccccchHHHHHHH---HHHcCCCCcEEecCcc
Confidence 8774 33444443 33344 555544433
No 129
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=59.84 E-value=96 Score=32.80 Aligned_cols=99 Identities=11% Similarity=-0.003 Sum_probs=56.1
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
++++.+ +.+++.+|++..-+.. ..+.+.+.+++.|+.+.. ...++. +++...+...+..+++.+.| .+|-+
T Consensus 179 ~l~~~~-~W~~Vaii~~~~~yg~~~~~~~~~~~~~~gi~i~~-~~~i~~---~~~~~d~~~~l~~lk~~~~d---a~vvv 250 (472)
T cd06374 179 DIVKRY-NWTYVSAVHTEGNYGESGMEAFKELAAHEGLCIAH-SDKIYS---NAGEQSFDRLLRKLRSRLPK---ARVVV 250 (472)
T ss_pred HHHHHC-CCcEEEEEEecchHHHHHHHHHHHHHHHCCeeEEE-EEEecC---CCchHHHHHHHHHHHhcCCC---cEEEE
Confidence 344443 4688998888765544 678888899998853221 122221 23456777888888876665 43333
Q ss_pred cCccHHHHHHHHHHhhcCCC--eEEEEcCC
Q 013271 186 GGGVIGDMCGYAAASYLRGV--SFIQIPTT 213 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g~--p~i~IPTT 213 (446)
+-+...++..++-.....++ +++-|.|.
T Consensus 251 ~~~~~~~~~~~l~~a~~~g~~~~~~wi~s~ 280 (472)
T cd06374 251 CFCEGMTVRGLLMAMRRLGVGGEFQLIGSD 280 (472)
T ss_pred EEechHHHHHHHHHHHHhcCCCceEEEEec
Confidence 32333455555544444443 24445443
No 130
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=59.50 E-value=1e+02 Score=25.69 Aligned_cols=79 Identities=10% Similarity=0.084 Sum_probs=48.6
Q ss_pred EEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 117 KVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 117 ~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
|+++++..+..-. ..+++++.+++.|+++ +..-+ +...+.... .++| +|=+|--...-.-+
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~--~i~a~-------~~~e~~~~~-----~~~D----vill~PQv~~~~~~ 63 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPL--EAAAG-------AYGSHYDMI-----PDYD----LVILAPQMASYYDE 63 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcE--EEEEe-------eHHHHHHhc-----cCCC----EEEEcChHHHHHHH
Confidence 5788887775444 7899999999999643 32222 333333322 2456 55566665554444
Q ss_pred HHHHhhcCCCeEEEEcCC
Q 013271 196 YAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTT 213 (446)
+-...-..++|+..||..
T Consensus 64 i~~~~~~~~ipv~~I~~~ 81 (99)
T cd05565 64 LKKDTDRLGIKLVTTTGK 81 (99)
T ss_pred HHHHhhhcCCCEEEeCHH
Confidence 443333568999999855
No 131
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=58.79 E-value=1.1e+02 Score=31.91 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=58.5
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHH-cCCCCcceEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFV 183 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~-~~~dr~~~II 183 (446)
++++.+ +.+++.+|++..-+.. ..+.+.+.+++.|+ .+.. ..++. .++...+..++..+++ .+++ +||
T Consensus 165 ~~l~~~-~w~~vaii~~~~~~G~~~~~~~~~~~~~~gi--~i~~~~~~~~---~~~~~d~~~~l~~l~~~~~a~---vii 235 (452)
T cd06362 165 DIVKAF-NWTYVSTVASEGNYGEKGIEAFEKLAAERGI--CIAGSEKIPS---SATEEEFDNIIRKLLSKPNAR---VVV 235 (452)
T ss_pred HHHHHC-CCcEEEEEEeCCHHHHHHHHHHHHHHHHCCe--eEEEEEEcCC---CCCHHHHHHHHHHHhhcCCCe---EEE
Confidence 455443 4688988888765544 77888889998884 3322 22321 2344667777777765 3566 777
Q ss_pred EEcCccHHHHHHHHHHhhcCCC--eEEEEcC
Q 013271 184 ALGGGVIGDMCGYAAASYLRGV--SFIQIPT 212 (446)
Q Consensus 184 AiGGGsv~D~aK~iAa~~~~g~--p~i~IPT 212 (446)
..|.. -|+..++..+...|+ +++-|.+
T Consensus 236 l~~~~--~~~~~~~~~a~~~g~~~~~~~i~~ 264 (452)
T cd06362 236 LFCRE--DDIRGLLAAAKRLNAEGHFQWIAS 264 (452)
T ss_pred EEcCh--HHHHHHHHHHHHcCCcCceEEEEe
Confidence 66543 677777765555555 4555543
No 132
>PRK06455 riboflavin synthase; Provisional
Probab=58.49 E-value=89 Score=28.42 Aligned_cols=75 Identities=17% Similarity=0.107 Sum_probs=37.9
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
|+.||..+.-.....+-..+.|.+.+....+..+.+|+ .+|.--.+-..+.+.++| .||++|-=--.+.-++
T Consensus 3 kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPG-----a~ELP~aakkL~~~~~yD---aVIaLG~VG~t~h~d~ 74 (155)
T PRK06455 3 KIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPG-----IKDLPVAAKKLIEEEGCD---IVMALGMPGPTEKDKY 74 (155)
T ss_pred EEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCC-----HHHHHHHHHHHHhcCCCC---EEEEecceeccCcchh
Confidence 45555443323235666677777744223445555564 233322333333456677 9999984222222256
Q ss_pred HHH
Q 013271 197 AAA 199 (446)
Q Consensus 197 iAa 199 (446)
++.
T Consensus 75 Va~ 77 (155)
T PRK06455 75 CAH 77 (155)
T ss_pred HHH
Confidence 554
No 133
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.26 E-value=34 Score=34.31 Aligned_cols=84 Identities=18% Similarity=0.331 Sum_probs=48.1
Q ss_pred EEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCC---------CcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 117 KVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENY---------KNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 117 ~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~---------~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
++.|+....-.+. +.+++.+.|++.|+ ++ ++ +..+.. ++....... +. ...++| +||.+
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~~g~--~v--~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~d---lvi~l 71 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEERGA--EV--LI-EEKFLDFLKQDLKFHPSYDTFSDN-EE-LDGSAD---MVISI 71 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHCCC--EE--EE-ecchhhhhccccccccccccccch-hh-cccCCC---EEEEE
Confidence 3667766544333 78889999998884 33 22 211100 000000000 11 112456 99999
Q ss_pred cC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 186 GG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 186 GG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
|| |+++-+++..+ ..++|++.|.+.
T Consensus 72 GGDGT~L~aa~~~~---~~~~PilGIN~G 97 (292)
T PRK01911 72 GGDGTFLRTATYVG---NSNIPILGINTG 97 (292)
T ss_pred CCcHHHHHHHHHhc---CCCCCEEEEecC
Confidence 98 78888887653 358999999865
No 134
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=57.49 E-value=86 Score=30.83 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=20.8
Q ss_pred eEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 181 TFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 181 ~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
++|+-||+++..++ ..|+|.+.||+.
T Consensus 244 l~Is~~G~T~~E~~-------a~g~P~i~i~~~ 269 (279)
T TIGR03590 244 LAIGAAGSTSWERC-------CLGLPSLAICLA 269 (279)
T ss_pred EEEECCchHHHHHH-------HcCCCEEEEEec
Confidence 88888887777766 258999999986
No 135
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.65 E-value=36 Score=33.59 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=23.7
Q ss_pred ceEEEEcC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 180 CTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 180 ~~IIAiGG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
|++|+||| |+++-++... ...++|++.|.+.
T Consensus 35 D~vi~iGGDGT~L~a~~~~---~~~~iPilGIN~G 66 (259)
T PRK00561 35 DYLFVLGGDGFFVSTAANY---NCAGCKVVGINTG 66 (259)
T ss_pred CEEEEECCcHHHHHHHHHh---cCCCCcEEEEecC
Confidence 39999998 7788777654 2568999988764
No 136
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=56.36 E-value=1.2e+02 Score=30.12 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=57.6
Q ss_pred hHhhhcCCCCEEEEEECCCchh-HHHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~-~~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
++++.+ +.+++.++++...+. ...+.+.+.+++.|+ ++.. ..++.+. +..+....+..+++.+.| +||.
T Consensus 128 ~~~~~~-~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~--~v~~~~~~~~~~---~~~d~~~~l~~i~~~~~d---vvi~ 198 (350)
T cd06366 128 ALLKKF-GWRRVATIYEDDDYGSGGLPDLVDALQEAGI--EISYRAAFPPSA---NDDDITDALKKLKEKDSR---VIVV 198 (350)
T ss_pred HHHHHC-CCcEEEEEEEcCcccchhHHHHHHHHHHcCC--EEEEEeccCCCC---ChhHHHHHHHHHhcCCCe---EEEE
Confidence 345443 468888887765543 367888899999885 3322 2233221 245677777777777777 8887
Q ss_pred EcCccHHHHHHHHHHhhcCCC---eEEEEcC
Q 013271 185 LGGGVIGDMCGYAAASYLRGV---SFIQIPT 212 (446)
Q Consensus 185 iGGGsv~D~aK~iAa~~~~g~---p~i~IPT 212 (446)
.+.+. |...++......|+ .++-|.+
T Consensus 199 ~~~~~--~~~~~~~~a~~~g~~~~~~~~i~~ 227 (350)
T cd06366 199 HFSPD--LARRVFCEAYKLGMMGKGYVWILT 227 (350)
T ss_pred ECChH--HHHHHHHHHHHcCCcCCCEEEEEC
Confidence 77655 66666554444443 3444444
No 137
>PLN02884 6-phosphofructokinase
Probab=55.96 E-value=26 Score=36.90 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh-cCC--CeEEEEcCCc
Q 013271 163 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRG--VSFIQIPTTV 214 (446)
Q Consensus 163 ~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~-~~g--~p~i~IPTTl 214 (446)
..+++++.++++++| .+|.|||--.++.|..++-.. .++ +|+|.||=|.
T Consensus 131 ~~~~i~~~L~~~~Id---~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTI 182 (411)
T PLN02884 131 KTSDIVDSIEARGIN---MLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTI 182 (411)
T ss_pred cHHHHHHHHHHcCCC---EEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccc
Confidence 478899999999999 999999999999998775321 244 9999999995
No 138
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=55.19 E-value=55 Score=31.71 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=57.7
Q ss_pred EEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHH
Q 013271 118 VLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYA 197 (446)
Q Consensus 118 vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~i 197 (446)
.|+.++... .+-+...|.+.| +.|+.+++...+++|+ ...++.+.+++.| +.|.|+.++=-++.-.-++.
T Consensus 136 LLfpcGn~~----rdil~kkL~~~G--~~Vds~~VY~T~~hp~--~~~~~~~alk~~~--~~d~ivfFSPsgv~~~lq~f 205 (260)
T KOG4132|consen 136 LLFPCGNLR----RDILPKKLHDKG--IRVDSCEVYETREHPD--GFKQFIHALKECG--FIDWIVFFSPSGVKSSLQYF 205 (260)
T ss_pred eEEEcccch----hHHHHHHHHhCC--ceeeEEEEEeeeeccc--HHHHHHHHHHhcC--CcceEEEECcchHHHHHHHH
Confidence 445555433 456666788899 4666666666666664 4455556666665 45699999999999999888
Q ss_pred HHhh--cCCCeEEEE-cCCc
Q 013271 198 AASY--LRGVSFIQI-PTTV 214 (446)
Q Consensus 198 Aa~~--~~g~p~i~I-PTTl 214 (446)
.... ...+.+++| |||-
T Consensus 206 ~~~~~s~~~~k~aaIGPtT~ 225 (260)
T KOG4132|consen 206 GDSNRSGDHLKLAAIGPTTR 225 (260)
T ss_pred HHhccchhheeEEEeCcchH
Confidence 5322 235788888 5653
No 139
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=54.34 E-value=85 Score=27.90 Aligned_cols=89 Identities=24% Similarity=0.241 Sum_probs=48.4
Q ss_pred EEEEEECCCc---hhHHHHHHHHHHhcCCCCee-EEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc----Cc
Q 013271 117 KVLVVTNNTV---APLYLDKVTDALTRGNPNVS-VENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG----GG 188 (446)
Q Consensus 117 ~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~-v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG----GG 188 (446)
|+.||..+.- .+...+-..+.|++.|+..+ +..+.+|+ .+|.=-.+-..++..++| .||++| |+
T Consensus 2 ri~IV~s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPG-----a~EiP~a~~~l~~~~~~D---avI~LG~VIrG~ 73 (138)
T TIGR00114 2 RVGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPG-----AFELPLAVKKLAETGKYD---AVIALGCVIRGG 73 (138)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCc-----HHHHHHHHHHHHhcCCCC---EEEEEeeEEeCC
Confidence 4566665532 23356667778888885322 34455554 444433333344455677 999999 66
Q ss_pred cHHH--HHHHHHH-----hhcCCCeEEEEcCC
Q 013271 189 VIGD--MCGYAAA-----SYLRGVSFIQIPTT 213 (446)
Q Consensus 189 sv~D--~aK~iAa-----~~~~g~p~i~IPTT 213 (446)
+.-+ ++..++. ....++|++.-=.|
T Consensus 74 T~H~e~v~~~v~~gl~~~sl~~~~PV~~GvLt 105 (138)
T TIGR00114 74 TPHFEYVADEAAKGIADLALDYDKPVIFGILT 105 (138)
T ss_pred CchhHHHHHHHHHHHHHHHhhhCCCEEEEecC
Confidence 5553 2222221 23457777654444
No 140
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.99 E-value=49 Score=35.07 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=53.0
Q ss_pred EEccCcCCC-h---hHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHH
Q 013271 97 YIGSGLLDH-P---DLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAI 172 (446)
Q Consensus 97 ~~G~g~~~~-~---~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~ 172 (446)
..|.|-... + .++++ .++|+++|+-........+++...-++.++ . +|+.+......+.+.++++.++
T Consensus 108 LQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v----~--~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 108 LQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGV----P--FFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred ccCCChHhHHHHHHHHHHH--cCCceEEEecccCChHHHHHHHHHHHHcCC----c--eecCCCCCCHHHHHHHHHHHHH
Confidence 457887655 3 45555 578888887766555677888876666653 2 2343333346789999999999
Q ss_pred HcCCCCcceEEE
Q 013271 173 ESRLDRRCTFVA 184 (446)
Q Consensus 173 ~~~~dr~~~IIA 184 (446)
+.++| +||-
T Consensus 180 ~~~~D---vvIv 188 (451)
T COG0541 180 EEGYD---VVIV 188 (451)
T ss_pred HcCCC---EEEE
Confidence 99998 7663
No 141
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=52.82 E-value=57 Score=37.09 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh---hc-CCCeEEEEcCCc
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---YL-RGVSFIQIPTTV 214 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~---~~-~g~p~i~IPTTl 214 (446)
.+..+++.+.++++++| .+|.|||--.++.|..++-. |. .++|+|.||=|.
T Consensus 464 ~~~~~~i~~~l~~~~Id---~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTI 518 (745)
T TIGR02478 464 GKDLGMIAYYFQKHKID---GLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATI 518 (745)
T ss_pred hhHHHHHHHHHHHcCCC---EEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccc
Confidence 56799999999999999 99999999999988766432 21 579999999995
No 142
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=52.76 E-value=1.5e+02 Score=30.25 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=57.0
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcC-CCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESR-LDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~-~dr~~~IIA 184 (446)
.+++.+ +.+++.+|++..-+.. ..+.+.+.+++.|+.+.. ...++ ++.......+..+++.+ ++ +||.
T Consensus 125 ~~~~~~-~w~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~-~~~~~-----~~~~d~~~~L~~lk~~~~~~---viv~ 194 (382)
T cd06371 125 TVLRYF-RWAHVAIVSSPQDIWVETAQKLASALRAHGLPVGL-VTSMG-----PDEKGAREALKKVRSADRVR---VVIM 194 (382)
T ss_pred HHHHHC-CCeEEEEEEecccchHHHHHHHHHHHHHCCCcEEE-EEEec-----CCHHHHHHHHHHHhcCCCcE---EEEE
Confidence 345443 4689999988765433 788889999988853321 12232 23467888888888776 46 7776
Q ss_pred EcCccH---HHHHHHHHHhhcCCCe---EEEEcCC
Q 013271 185 LGGGVI---GDMCGYAAASYLRGVS---FIQIPTT 213 (446)
Q Consensus 185 iGGGsv---~D~aK~iAa~~~~g~p---~i~IPTT 213 (446)
.+-... -|..-++..+...|+. ++-|++-
T Consensus 195 ~~~~~~~~~~~~~~i~~qa~~~Gm~~~~y~~i~~d 229 (382)
T cd06371 195 CMHSVLIGGEEQRLLLETALEMGMTDGRYVFIPYD 229 (382)
T ss_pred EeeccccCcHHHHHHHHHHHHcCCcCCcEEEEEec
Confidence 543211 1333333333344444 6666554
No 143
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=52.54 E-value=1e+02 Score=27.49 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=54.2
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
|+.|-+|..-.+ +.+.+.++|++.| ++|..+-..+.++..-.+...++.+.+.+..+|| .|+--|-|.=+-++
T Consensus 1 KI~igsDh~g~~-lK~~i~~~L~~~g--~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~--GIliCgtGiG~~ia-- 73 (140)
T PF02502_consen 1 KIAIGSDHAGFE-LKEAIKEYLEEKG--YEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADR--GILICGTGIGMSIA-- 73 (140)
T ss_dssp EEEEEE-GGGHH-HHHHHHHHHHHTT--EEEEEESESSTST--HHHHHHHHHHHHHTTSSSE--EEEEESSSHHHHHH--
T ss_pred CEEEEeCHHHHH-HHHHHHHHHHHCC--CEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCe--EEEEcCCChhhhhH--
Confidence 466777775444 5788999999998 6665544343333333466777778888777776 67777777655544
Q ss_pred HHHhhcCCCeEEEEcCCc
Q 013271 197 AAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 197 iAa~~~~g~p~i~IPTTl 214 (446)
+--.+|+....+....
T Consensus 74 --ANK~~GIrAa~~~d~~ 89 (140)
T PF02502_consen 74 --ANKVPGIRAALCSDPY 89 (140)
T ss_dssp --HHTSTT--EEE-SSHH
T ss_pred --hhcCCCEEEEeeCCHH
Confidence 2334678777766553
No 144
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.50 E-value=63 Score=32.60 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=49.3
Q ss_pred CEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCC-C--CCc---------HHHHHHHHHHHHHcCCCCcce
Q 013271 116 KKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGE-N--YKN---------MDTLMKVFDKAIESRLDRRCT 181 (446)
Q Consensus 116 k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge-~--~~t---------~~~v~~~~~~~~~~~~dr~~~ 181 (446)
+++.|+....-.+. +.+++.+.|.+.|+ ++. +.+... . .+. ++... . +. ...++| +
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~--~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~D---l 71 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGW--EVV--RASSSGGILGYANPDQPVCHTGIDQLV-P-PG-FDSSMK---F 71 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCCC--EEE--EecchhhhcCccccccccccccccccC-h-hh-cccCcC---E
Confidence 46788877655433 78899999999884 332 211100 0 000 00000 0 11 112466 9
Q ss_pred EEEEcC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 182 FVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 182 IIAiGG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+|.+|| |+++-++... ...++|++.|.+.
T Consensus 72 vi~iGGDGTlL~aar~~---~~~~iPilGIN~G 101 (305)
T PRK02649 72 AIVLGGDGTVLSAARQL---APCGIPLLTINTG 101 (305)
T ss_pred EEEEeCcHHHHHHHHHh---cCCCCcEEEEeCC
Confidence 999998 7888777654 2468999999754
No 145
>PRK13761 hypothetical protein; Provisional
Probab=51.76 E-value=39 Score=32.61 Aligned_cols=84 Identities=12% Similarity=0.178 Sum_probs=60.6
Q ss_pred eeEEEccCcCCC-hhHhh----hcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHH
Q 013271 94 YPIYIGSGLLDH-PDLLQ----KHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 168 (446)
Q Consensus 94 ~~I~~G~g~~~~-~~~l~----~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~ 168 (446)
+++.+|+-..+. -+-.+ .+-..++++|=.+.++..+..+.+.+.-+..+.+++|.. | +.|.+.++++.
T Consensus 41 FDYLlGEkT~~~A~~A~raAaA~LLlA~~PVISVNGN~AAL~p~eiveLa~~~~A~iEVNL--F-----~RT~eR~~~I~ 113 (248)
T PRK13761 41 FDYLLGEKTTPSALEAERAAAALLLLAKHPVISVNGNTAALVPEEIVELAEALNAKLEVNL--F-----YRTEERVEKIA 113 (248)
T ss_pred HhHhcccCCcHHHHHHHHHHHHHHHhcCCCeEEEcchHHhhChHHHHHHHHHhCCCEEEEe--c-----cCCHHHHHHHH
Confidence 566778777655 22111 111368899999999999988888876666665455543 3 56889999999
Q ss_pred HHHHHcCCCCcceEEEEcC
Q 013271 169 DKAIESRLDRRCTFVALGG 187 (446)
Q Consensus 169 ~~~~~~~~dr~~~IIAiGG 187 (446)
+.++++|++ .|.|++-
T Consensus 114 ~~l~~~Ga~---~vlG~~~ 129 (248)
T PRK13761 114 EVLREHGAK---EVLGTDE 129 (248)
T ss_pred HHHHHcCCc---eeeCCCC
Confidence 999999998 8888764
No 146
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=51.72 E-value=63 Score=28.59 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=39.2
Q ss_pred EECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc--CccHHHHHHHH
Q 013271 121 VTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG--GGVIGDMCGYA 197 (446)
Q Consensus 121 Vtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG--GGsv~D~aK~i 197 (446)
|.|.+..+. .+.-..+.|++.-..+.+.-+.+|+... +- -..-+.+.+.||| .++++| |..-.|--.+.
T Consensus 6 iaDTTFaRvdMg~vai~~lk~~~~~~~i~R~TVPGIKd---lp--vaakrLieeeGCd---~Vi~lG~~G~t~~Dk~~~~ 77 (154)
T COG1731 6 IADTTFARVDMGSVAIDELKKLLPGIKIKRYTVPGIKD---LP--VAAKRLIEEEGCD---IVIALGWVGPTEKDKYSYL 77 (154)
T ss_pred eeccceeeecchHHHHHHHHhhCCCCceEEeeCCCccc---Ch--HHHHHHHHhcCCc---EEEEccCcCcchhhHHHHH
Confidence 456655543 3333333343332223455566665432 21 1222334559999 999999 78888877666
Q ss_pred HH
Q 013271 198 AA 199 (446)
Q Consensus 198 Aa 199 (446)
++
T Consensus 78 ~a 79 (154)
T COG1731 78 AA 79 (154)
T ss_pred HH
Confidence 54
No 147
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=51.09 E-value=1.9e+02 Score=27.00 Aligned_cols=84 Identities=13% Similarity=0.023 Sum_probs=50.5
Q ss_pred CCEEEEEECCCch--hHHHHHHHHHHhcC---CCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCcc
Q 013271 115 GKKVLVVTNNTVA--PLYLDKVTDALTRG---NPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 189 (446)
Q Consensus 115 ~k~vliVtd~~v~--~~~~~~v~~~L~~~---gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGs 189 (446)
+.+++++...... +.+.+.+.+.+... ++ +++...++ ....++.+.++.+.+.+..-+ +++|.+.||.
T Consensus 26 ~~~vilv~~~~~~~~~~a~~~l~~~~~~~~~~~~--~~~~~~vd---~~d~~~~~~~v~~~i~~~~~~--~v~vnlsgG~ 98 (203)
T TIGR01884 26 GDLVILVKSPIEDGARRAVESLRAIISDLGGNLV--EGTIKEIE---LKDVPSILRQMSDIIKEEREP--RVIINLSGGM 98 (203)
T ss_pred CcEEEEEcCCCchHHHHHHHHHHHHHHHhccCCC--cceEEEEe---cCCHHHHHHHHHHHHHhcccC--cEEEEcCCCc
Confidence 3467777644322 23677777777654 43 33433332 222457788888877766443 2888987776
Q ss_pred H-HHHHHHHHHhhcCCC
Q 013271 190 I-GDMCGYAAASYLRGV 205 (446)
Q Consensus 190 v-~D~aK~iAa~~~~g~ 205 (446)
= +-++-+.|+...+..
T Consensus 99 R~l~~~~~~a~~~~~~~ 115 (203)
T TIGR01884 99 RILILILLLLAILVKTR 115 (203)
T ss_pred hHHHHHHHHHHHhcccc
Confidence 5 777777776654443
No 148
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=51.07 E-value=1.3e+02 Score=29.84 Aligned_cols=73 Identities=16% Similarity=0.022 Sum_probs=46.2
Q ss_pred CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 114 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
+.+++.+++...-+.. ..+.+.+.+++.|+ ++.. ..++.+ ..+....+..++..++| +|+-.|.|.
T Consensus 134 ~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~--~v~~~~~~~~~-----~~d~~~~v~~l~~~~~d---~v~~~~~~~-- 201 (340)
T cd06349 134 GFKKVAILSVNTDWGRTSADIFVKAAEKLGG--QVVAHEEYVPG-----EKDFRPTITRLRDANPD---AIILISYYN-- 201 (340)
T ss_pred CCcEEEEEecCChHhHHHHHHHHHHHHHcCC--EEEEEEEeCCC-----CCcHHHHHHHHHhcCCC---EEEEccccc--
Confidence 3578888877766654 77889999999885 3321 223322 23456677777888888 776666543
Q ss_pred HHHHHHH
Q 013271 192 DMCGYAA 198 (446)
Q Consensus 192 D~aK~iA 198 (446)
|++.++.
T Consensus 202 ~~~~~~~ 208 (340)
T cd06349 202 DGAPIAR 208 (340)
T ss_pred hHHHHHH
Confidence 4444443
No 149
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=50.96 E-value=1.3e+02 Score=30.53 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=49.7
Q ss_pred CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 114 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
+.+++.++.+...+.. ..+.+.+.+++.|. ++. ...++.+ ..+....+.++++.++| +|+-.|.+ -
T Consensus 160 ~~k~va~i~~d~~~g~~~~~~~~~~~~~~G~--~v~~~~~~~~g-----~~D~~~~v~~l~~~~~d---~v~~~~~~--~ 227 (369)
T PRK15404 160 KPKRIAVLHDKQQYGEGLARSVKDGLKKAGA--NVVFFEGITAG-----DKDFSALIAKLKKENVD---FVYYGGYH--P 227 (369)
T ss_pred CCCEEEEEeCCCchhHHHHHHHHHHHHHcCC--EEEEEEeeCCC-----CCchHHHHHHHHhcCCC---EEEECCCc--h
Confidence 4688999988776654 77888889999984 332 2233332 23455566777888998 77643333 2
Q ss_pred HHHHHHHHhhcCCC
Q 013271 192 DMCGYAAASYLRGV 205 (446)
Q Consensus 192 D~aK~iAa~~~~g~ 205 (446)
|++.++-.....|+
T Consensus 228 ~~~~~~k~~~~~G~ 241 (369)
T PRK15404 228 EMGQILRQAREAGL 241 (369)
T ss_pred HHHHHHHHHHHCCC
Confidence 66655543333443
No 150
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=50.23 E-value=36 Score=40.76 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhc-C--CCeEEEEcCCcC
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-R--GVSFIQIPTTVM 215 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~-~--g~p~i~IPTTl~ 215 (446)
.+.+..+++++.+++.++| .+|.|||--.++.|..++-.+. . .+++|.||-|.-
T Consensus 180 ~~ee~~~~~le~lkkl~Id---~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTID 236 (1328)
T PTZ00468 180 ETEEQMRASLEICEKLKLH---GLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTID 236 (1328)
T ss_pred CCHHHHHHHHHHHHHhCCC---EEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEc
Confidence 4567899999999999999 9999999999998877754322 3 499999999963
No 151
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=49.90 E-value=38 Score=36.21 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh-cC--CCeEEEEcCCc
Q 013271 162 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LR--GVSFIQIPTTV 214 (446)
Q Consensus 162 ~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~-~~--g~p~i~IPTTl 214 (446)
...+++++.+++.++| .++.|||--.++.|..++-.. ++ .+++|.||=|.
T Consensus 163 ~~~~~iv~~L~~~~I~---~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTI 215 (459)
T PTZ00286 163 FDPKVMVDTLIRHGIN---ILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTI 215 (459)
T ss_pred hhHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCCceEEEecccc
Confidence 5789999999999999 999999999999887775422 23 49999999996
No 152
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=49.20 E-value=38 Score=36.54 Aligned_cols=89 Identities=11% Similarity=0.205 Sum_probs=50.3
Q ss_pred CCCEEEEEECCCchhH--HHHHHHHHHh-cCCCCeeEEEEEeCCCCC-----CCcHHHHHHH---HHHH--HHcCCCCcc
Q 013271 114 QGKKVLVVTNNTVAPL--YLDKVTDALT-RGNPNVSVENVILPDGEN-----YKNMDTLMKV---FDKA--IESRLDRRC 180 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~--~~~~v~~~L~-~~gi~~~v~~~i~~~ge~-----~~t~~~v~~~---~~~~--~~~~~dr~~ 180 (446)
..++++||+...-.+. +..++.+.|. ..|+ ++ ++-+.... ++..+ .... .+.. ...++|
T Consensus 193 ~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi--~V--~ve~~~a~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~D--- 264 (508)
T PLN02935 193 DPQTVLIITKPNSTSVRVLCAEMVRWLREQKGL--NI--YVEPRVKKELLSESSYFN-FVQTWEDEKEILLLHTKVD--- 264 (508)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCC--EE--EEechhhhhhcccccccc-ccccccccchhhhcccCCC---
Confidence 3689999988765443 6788888888 4663 33 22111000 00000 0000 0010 112466
Q ss_pred eEEEEcC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 181 TFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 181 ~IIAiGG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+||.||| |+++-++.... ...+|++.|.+.
T Consensus 265 lVIsiGGDGTlL~Aar~~~---~~~iPILGIN~G 295 (508)
T PLN02935 265 LVITLGGDGTVLWAASMFK---GPVPPVVPFSMG 295 (508)
T ss_pred EEEEECCcHHHHHHHHHhc---cCCCcEEEEeCC
Confidence 9999998 88888777542 457899888644
No 153
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=49.09 E-value=1e+02 Score=31.14 Aligned_cols=100 Identities=18% Similarity=0.268 Sum_probs=57.8
Q ss_pred hhHhhhcCCCCEEEEEECCCch--hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCC-----cHHHHHHHHHHHHH-cCCC
Q 013271 106 PDLLQKHVQGKKVLVVTNNTVA--PLYLDKVTDALTRGNPNVSVENVILPDGENYK-----NMDTLMKVFDKAIE-SRLD 177 (446)
Q Consensus 106 ~~~l~~~~~~k~vliVtd~~v~--~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~-----t~~~v~~~~~~~~~-~~~d 177 (446)
++++.....+.-+..+-..+-. ....+.+.+.+++.| .+ .+++|.|-.|| =++-+.++.++..+ ..+|
T Consensus 107 gn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g--~k--pyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD 182 (323)
T COG2515 107 GNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQG--GK--PYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFD 182 (323)
T ss_pred cchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcC--CC--CcEeccCCcCccccccHHHHHHHHHHHHhhccCCC
Confidence 4444332123444444433333 236677777777777 33 34555544554 24667777777765 5555
Q ss_pred CcceEEEEcCccHHHHHHHHHHh--hcCCCeEEEEcCC
Q 013271 178 RRCTFVALGGGVIGDMCGYAAAS--YLRGVSFIQIPTT 213 (446)
Q Consensus 178 r~~~IIAiGGGsv~D~aK~iAa~--~~~g~p~i~IPTT 213 (446)
.+|+|.|+|.+. |++++.. ..+..++|-||-+
T Consensus 183 --~vVva~gs~gT~--AGl~~g~~~~~~~~~ViG~~v~ 216 (323)
T COG2515 183 --SVVVAPGSGGTH--AGLLVGLAQLGPDVEVIGIDVS 216 (323)
T ss_pred --EEEEeCCCcchH--HHHHHHhhhccCCCceEEEeec
Confidence 478888877764 4444322 2478999999866
No 154
>PLN02204 diacylglycerol kinase
Probab=48.79 E-value=60 Score=35.85 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=44.3
Q ss_pred CCCEEEEEECCCchh----HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-c
Q 013271 114 QGKKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-G 188 (446)
Q Consensus 114 ~~k~vliVtd~~v~~----~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-G 188 (446)
..|+.+|+.++...+ ...+.+...|..++++ +.+++-. .++--.+.+.++.+ +...+.| .|||+|| |
T Consensus 158 r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~--~~v~~T~--~aghA~d~~~~~~~-~~l~~~D---~VVaVGGDG 229 (601)
T PLN02204 158 RPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVK--TKVIVTE--RAGHAFDVMASISN-KELKSYD---GVIAVGGDG 229 (601)
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCe--EEEEEec--CcchHHHHHHHHhh-hhccCCC---EEEEEcCcc
Confidence 357899999876543 3566899999999853 3333221 11111222222211 1234556 9999999 7
Q ss_pred cHHHHHHHH
Q 013271 189 VIGDMCGYA 197 (446)
Q Consensus 189 sv~D~aK~i 197 (446)
++-.+.-.+
T Consensus 230 t~nEVlNGL 238 (601)
T PLN02204 230 FFNEILNGY 238 (601)
T ss_pred HHHHHHHHH
Confidence 777777555
No 155
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=48.26 E-value=1.4e+02 Score=29.67 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=50.2
Q ss_pred HhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhc--CCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEE
Q 013271 108 LLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTR--GNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 183 (446)
Q Consensus 108 ~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~--~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~II 183 (446)
++....+.+++.++.+...+.. ..+.+.+.+++ .|+ ++.. ..++.+. ..+....+..+++.++| +|+
T Consensus 136 ~~~~~~~~k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~--~vv~~~~~~~~~----~~d~~~~i~~l~~~~~d---~v~ 206 (342)
T cd06329 136 YIKKQPDGKKVYLINQDYSWGQDVAAAFKAMLAAKRPDI--QIVGEDLHPLGK----VKDFSPYVAKIKASGAD---TVI 206 (342)
T ss_pred HHHhcccCceEEEEeCChHHHHHHHHHHHHHHHhhcCCc--EEeceeccCCCC----CCchHHHHHHHHHcCCC---EEE
Confidence 4444323688999887665554 77888899988 874 3321 1222211 13345556677888888 666
Q ss_pred EEcCccHHHHHHHHHHhhcCCC
Q 013271 184 ALGGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 184 AiGGGsv~D~aK~iAa~~~~g~ 205 (446)
-.+.+. |.+.++-.....|+
T Consensus 207 ~~~~~~--~~~~~~~~~~~~g~ 226 (342)
T cd06329 207 TGNWGN--DLLLLVKQAADAGL 226 (342)
T ss_pred EcccCc--hHHHHHHHHHHcCC
Confidence 655443 56655544433443
No 156
>PTZ00287 6-phosphofructokinase; Provisional
Probab=48.16 E-value=41 Score=40.61 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhc-CCCe--EEEEcCCcC
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-RGVS--FIQIPTTVM 215 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~-~g~p--~i~IPTTl~ 215 (446)
++.+..+++.+.++++++| .+|-|||--.++.|..++-.+. .++| +|.||-|..
T Consensus 255 ~~~e~~~ki~e~lkkl~Id---~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTID 311 (1419)
T PTZ00287 255 RNKDDLIAIENIVAKLKLN---GLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTID 311 (1419)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeec
Confidence 3558899999999999999 9999999999999877764332 5666 699999963
No 157
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=48.07 E-value=2.1e+02 Score=28.87 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=50.1
Q ss_pred hHhhhcCCCCEEEEEECCCc--hhHHHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTV--APLYLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 183 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v--~~~~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~II 183 (446)
++++.. +.+++.++++... .....+.+.+.+++.|+ ++.. ..++.+. +.......++++++.+ + +||
T Consensus 130 ~~l~~~-~~~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~--~v~~~~~~~~~~---~~~d~~~~l~~i~~~~-~---vii 199 (389)
T cd06352 130 ALLRWF-NWHVAVVVYSDDSENCFFTLEALEAALREFNL--TVSHVVFMEDNS---GAEDLLEILQDIKRRS-R---III 199 (389)
T ss_pred HHHHHc-CceEEEEEEecCCccHHHHHHHHHHHHHhcCC--eEEEEEEecCCc---cchhHHHHHHHhhhcc-e---EEE
Confidence 444443 3578888887665 44477888899998885 3322 2233221 1344556666666554 4 777
Q ss_pred EEcCccHHHHHHHHHHhhcCCC
Q 013271 184 ALGGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 184 AiGGGsv~D~aK~iAa~~~~g~ 205 (446)
.++.+ -|...++......|+
T Consensus 200 ~~~~~--~~~~~~l~q~~~~g~ 219 (389)
T cd06352 200 MCGSS--EDVRELLLAAHDLGL 219 (389)
T ss_pred EECCH--HHHHHHHHHHHHcCC
Confidence 77664 455555544444443
No 158
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=47.67 E-value=2.3e+02 Score=28.65 Aligned_cols=96 Identities=11% Similarity=0.136 Sum_probs=59.2
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCe--eEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNV--SVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 182 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~--~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~I 182 (446)
++++.+ +.+++.+|++..-+.. ..+.+.+.+++.|+.+ ++.. ..++ +...+....+..+++.+++ +|
T Consensus 147 ~~l~~~-~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~-----~~~~d~~~~l~~ik~~~~~---vI 217 (377)
T cd06379 147 EMLRSF-KWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFE-----PGEKNVTSLLQEAKELTSR---VI 217 (377)
T ss_pred HHHHHc-CCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecC-----CchhhHHHHHHHHhhcCCe---EE
Confidence 455544 5789999988766544 6788889999888521 2211 1222 2335667777788887887 77
Q ss_pred EEEcCccHHHHHHHHHHhhcCCC---eEEEEcCC
Q 013271 183 VALGGGVIGDMCGYAAASYLRGV---SFIQIPTT 213 (446)
Q Consensus 183 IAiGGGsv~D~aK~iAa~~~~g~---p~i~IPTT 213 (446)
|.. +..-|+..++..+...|+ .++-|-|.
T Consensus 218 vl~--~~~~~~~~l~~qa~~~g~~~~~~~wi~t~ 249 (377)
T cd06379 218 LLS--ASEDDAAVIYRNAGMLNMTGEGYVWIVSE 249 (377)
T ss_pred EEE--cCHHHHHHHHHHHHHcCCCCCCEEEEEec
Confidence 754 445566766655544433 36556555
No 159
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=47.22 E-value=1.3e+02 Score=25.38 Aligned_cols=80 Identities=21% Similarity=0.204 Sum_probs=50.8
Q ss_pred CEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHH
Q 013271 116 KKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 194 (446)
Q Consensus 116 k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~a 194 (446)
+++++|+..+..-. ..++.+++.++.|+ ++...-++. ..+.+.++ ++| ++=+|=-+-.=.-
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~--~~~I~A~s~-------~e~~~~~~-----~~D----vvLlGPQv~y~~~ 63 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGK--DVTIEAYSE-------TELSEYID-----NAD----VVLLGPQVRYMLK 63 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCC--ceEEEEech-------hHHHHhhh-----cCC----EEEEChHHHHHHH
Confidence 57899999886654 88999999999995 333333332 23333332 567 5556665544433
Q ss_pred HHHHHhhcCCCeEEEEcCC
Q 013271 195 GYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 195 K~iAa~~~~g~p~i~IPTT 213 (446)
.+--..-.+++|+..||+-
T Consensus 64 ~~~~~~~~~giPV~vI~~~ 82 (102)
T COG1440 64 QLKEAAEEKGIPVEVIDML 82 (102)
T ss_pred HHHHHhcccCCCeEEeCHH
Confidence 3333334578999999976
No 160
>PF09002 DUF1887: Domain of unknown function (DUF1887); InterPro: IPR015093 This entry represents a set of hypothetical bacterial and archaeal proteins. ; PDB: 1XMX_A.
Probab=47.17 E-value=1.4e+02 Score=30.93 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=46.3
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHH----HHHHHHHcCCCCcceEEEEcCcc
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMK----VFDKAIESRLDRRCTFVALGGGV 189 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~----~~~~~~~~~~dr~~~IIAiGGGs 189 (446)
..+++++|+++.. +...+++...|+..++ .++.+.+++. .+++.+.+ +++.+.+ +-+ +++-+=||+
T Consensus 26 ~p~kvvlI~t~~~-~~~~~~L~~~l~~~~~--~~e~~~i~d~---~d~~~i~~~l~~l~~~~~~-~~~---i~lNlTGGT 95 (381)
T PF09002_consen 26 KPDKVVLIGTEDM-KEKAERLKSVLKQRGI--KVEFFEIPDE---YDIEEIKESLEQLLEKLKA-GDE---IILNLTGGT 95 (381)
T ss_dssp ---EEEEEE-GGG-HHHHHHHHHHHHHTT---EEEEEE--SS---S-HHHHHHHHHHHHHHHHH-T-E---EEEE-SSS-
T ss_pred CCCEEEEEECchH-HHHHHHHHHHHHhcCC--CceEEecCCh---hhHHHHHHHHHHHHHhccC-CCe---EEEEeCCCh
Confidence 3567777766655 4467788899998885 5555555432 34454444 3333333 333 888888887
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 190 IGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
=+-.-.+.-+.-..+.|++.+.|.
T Consensus 96 K~MaLaay~~~r~~~~~i~Yvd~~ 119 (381)
T PF09002_consen 96 KLMALAAYEAFRKYGWPIFYVDPE 119 (381)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHhcCCCEEEEecC
Confidence 664443332233678899988766
No 161
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=46.75 E-value=51 Score=35.10 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh---hcCCCeEEEEcCCc
Q 013271 162 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---YLRGVSFIQIPTTV 214 (446)
Q Consensus 162 ~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~---~~~g~p~i~IPTTl 214 (446)
...+++++.++++++| .++.|||--.++.|..++-. ....+++|.||=|.
T Consensus 159 ~~~~~iv~~L~~~~I~---~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTI 211 (443)
T PRK06830 159 QDPEEIVDTLERMNIN---ILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTI 211 (443)
T ss_pred hhHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCCceEEEecccc
Confidence 4688999999999999 99999999999999776532 12349999999995
No 162
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=46.64 E-value=83 Score=28.12 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=40.2
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhcCCCC-eeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc----
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPN-VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG---- 186 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~~gi~-~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG---- 186 (446)
+-|+.||....-.+ .+.+...+.|.+.|+. -.++.+.+|+. +|.--.+-..++..++| .||++|
T Consensus 3 ~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa-----~ElP~a~~~l~~~~~~D---avi~lG~VI~ 74 (144)
T PF00885_consen 3 GLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGA-----FELPLAAKRLAESGRYD---AVIALGCVIR 74 (144)
T ss_dssp TEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSG-----GGHHHHHHHHHHCSTES---EEEEEEEEE-
T ss_pred CCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCH-----HHHHHHHHHHhcccCcc---EEEEeccccC
Confidence 35677776654333 2566677888888851 13455666753 33333333333444577 999999
Q ss_pred CccHHH
Q 013271 187 GGVIGD 192 (446)
Q Consensus 187 GGsv~D 192 (446)
|++..+
T Consensus 75 G~T~H~ 80 (144)
T PF00885_consen 75 GETDHF 80 (144)
T ss_dssp -SSTHH
T ss_pred CCchHH
Confidence 555444
No 163
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=46.62 E-value=1.5e+02 Score=29.56 Aligned_cols=81 Identities=19% Similarity=0.072 Sum_probs=49.0
Q ss_pred CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 114 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
+.+|+.+++....+.. +.+.+.+.+++.|+++ +....++. .-......++++++.++| .|+-.|.+ -|
T Consensus 137 ~~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v-~~~~~~~~-----~~~d~s~~i~~i~~~~~d---~v~~~~~~--~~ 205 (347)
T cd06335 137 GFKKVALLLDNTGWGRSNRKDLTAALAARGLKP-VAVEWFNW-----GDKDMTAQLLRAKAAGAD---AIIIVGNG--PE 205 (347)
T ss_pred CCCeEEEEeccCchhhhHHHHHHHHHHHcCCee-EEEeeecC-----CCccHHHHHHHHHhCCCC---EEEEEecC--hH
Confidence 3689999987775554 7888999999988532 12223332 224456677777888888 66665543 34
Q ss_pred HHHHHHHhhcCCC
Q 013271 193 MCGYAAASYLRGV 205 (446)
Q Consensus 193 ~aK~iAa~~~~g~ 205 (446)
.+.++......|+
T Consensus 206 ~~~~~~~~~~~g~ 218 (347)
T cd06335 206 GAQIANGMAKLGW 218 (347)
T ss_pred HHHHHHHHHHcCC
Confidence 4444433333443
No 164
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=46.19 E-value=1.1e+02 Score=35.00 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=46.9
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh--------------------cCCCeEEEEcCCcC---
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVM--- 215 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~--------------------~~g~p~i~IPTTl~--- 215 (446)
++.+...++++.++++++| .+|.|||--.++.|..++.-+ ..++++|.||=|.-
T Consensus 78 ~~~~~~~~~~~~L~~~~Id---~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl 154 (745)
T TIGR02478 78 RERPGRLKAARNLIKRGID---NLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDM 154 (745)
T ss_pred cCHHHHHHHHHHHHHhCCC---EEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCC
Confidence 3556778999999999999 999999999998886443211 23799999999963
Q ss_pred cccccccc
Q 013271 216 AQVDSSVG 223 (446)
Q Consensus 216 A~tds~v~ 223 (446)
.+||-++|
T Consensus 155 ~gTd~TiG 162 (745)
T TIGR02478 155 CGTDMTIG 162 (745)
T ss_pred CCCcCCCC
Confidence 35554444
No 165
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=46.02 E-value=2e+02 Score=28.45 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=47.1
Q ss_pred CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCc-cH
Q 013271 114 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGG-VI 190 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGG-sv 190 (446)
+.+++.++.+..-+.. ..+.+.+.+++.|+ ++. ...++ ++..+....+..+++.++| +|+..+.+ ..
T Consensus 131 g~~~v~i~~~~~~~g~~~~~~~~~~~~~~G~--~v~~~~~~~-----~~~~d~~~~v~~l~~~~pd---~v~~~~~~~~~ 200 (333)
T cd06358 131 GARRWYLIGNDYVWPRGSLAAAKRYIAELGG--EVVGEEYVP-----LGTTDFTSVLERIAASGAD---AVLSTLVGQDA 200 (333)
T ss_pred CCCeEEEEeccchhhHHHHHHHHHHHHHcCC--EEeeeeeec-----CChHHHHHHHHHHHHcCCC---EEEEeCCCCch
Confidence 4688999987765543 66777788888884 332 12232 3445677778888889988 77765444 33
Q ss_pred HHHHHHH
Q 013271 191 GDMCGYA 197 (446)
Q Consensus 191 ~D~aK~i 197 (446)
..+.|.+
T Consensus 201 ~~~~~~~ 207 (333)
T cd06358 201 VAFNRQF 207 (333)
T ss_pred HHHHHHH
Confidence 3444433
No 166
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.93 E-value=62 Score=31.94 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=24.2
Q ss_pred eEEEEcC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 181 TFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 181 ~IIAiGG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
++|.+|| |+.+-+++..+. ...++|++.|.+.
T Consensus 38 lvi~iGGDGT~L~a~~~~~~-~~~~iPilGIN~G 70 (265)
T PRK04885 38 IVISVGGDGTLLSAFHRYEN-QLDKVRFVGVHTG 70 (265)
T ss_pred EEEEECCcHHHHHHHHHhcc-cCCCCeEEEEeCC
Confidence 9999998 888888876531 1258899988864
No 167
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=45.86 E-value=1.7e+02 Score=28.59 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=47.9
Q ss_pred hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEE
Q 013271 106 PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 183 (446)
Q Consensus 106 ~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~II 183 (446)
.+++.+. +.+++.++++...+.. ..+.+.+.+++.|+ ++. ...++. ...+....+..+++.++| .|+
T Consensus 126 ~~~l~~~-~~~~v~~l~~~~~~g~~~~~~~~~~~~~~G~--~v~~~~~~~~-----~~~d~~~~v~~~~~~~pd---~v~ 194 (336)
T cd06360 126 GKYAADD-GYKKVVTVAWDYAFGYEVVEGFKEAFTEAGG--KIVKELWVPF-----GTSDFASYLAQIPDDVPD---AVF 194 (336)
T ss_pred HHHHHHc-CCCeEEEEeccchhhHHHHHHHHHHHHHcCC--EEEEEEecCC-----CCcchHHHHHHHHhcCCC---EEE
Confidence 3455544 4788888877655544 56778888988885 332 223332 234555677777888888 666
Q ss_pred EEcCccHHHHHHHHH
Q 013271 184 ALGGGVIGDMCGYAA 198 (446)
Q Consensus 184 AiGGGsv~D~aK~iA 198 (446)
-.+. .-|.+.++-
T Consensus 195 ~~~~--~~~~~~~~~ 207 (336)
T cd06360 195 VFFA--GGDAIKFVK 207 (336)
T ss_pred Eecc--cccHHHHHH
Confidence 4433 344454443
No 168
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=45.72 E-value=1.5e+02 Score=29.50 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=48.6
Q ss_pred CCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 115 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 115 ~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
.+++.++++...+.. ..+.+++.+++.|. ++-. ..++ +...+....+.++++.++| .|+-...|-. |
T Consensus 136 ~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~--~vv~~~~~~-----~~~~d~~~~v~~l~~~~pd---~V~~~~~~~~-~ 204 (333)
T cd06328 136 GKKIATLAQDYAFGRDGVAAFKAALEKLGA--AIVTEEYAP-----TDTTDFTPYAQRLLDALKK---VLFVIWAGAG-G 204 (333)
T ss_pred CCeEEEEecCccccHHHHHHHHHHHHhCCC--EEeeeeeCC-----CCCcchHHHHHHHHhcCCC---EEEEEecCch-h
Confidence 688888888776654 77888999999984 3321 2222 2334566667788888998 6654433322 7
Q ss_pred HHHHHHHhh
Q 013271 193 MCGYAAASY 201 (446)
Q Consensus 193 ~aK~iAa~~ 201 (446)
..+.+...-
T Consensus 205 ~~~~~~~~~ 213 (333)
T cd06328 205 PWPKLQQMG 213 (333)
T ss_pred HHHHHHHhh
Confidence 777665443
No 169
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=45.66 E-value=66 Score=31.99 Aligned_cols=94 Identities=23% Similarity=0.346 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEEcCc--------cHHHHHHHHHHhh---cCCCeEEEEcCCcC-ccccccccCeEEEe
Q 013271 162 DTLMKVFDKAIESRLDRRCTFVALGGG--------VIGDMCGYAAASY---LRGVSFIQIPTTVM-AQVDSSVGGKTGIN 229 (446)
Q Consensus 162 ~~v~~~~~~~~~~~~dr~~~IIAiGGG--------sv~D~aK~iAa~~---~~g~p~i~IPTTl~-A~tds~v~~k~~i~ 229 (446)
+.+-++++.+.+.++. =++++--|| |.|.+||--|+.- ..++|||.|.|-.- .++-++.+.-.-|+
T Consensus 144 eki~ra~E~A~e~k~P--~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~ 221 (294)
T COG0777 144 EKITRAIERAIEDKLP--LVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDII 221 (294)
T ss_pred HHHHHHHHHHHHhCCC--EEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchhHhHHhccCee
Confidence 4456667777777765 134444555 5678899877653 35899999955421 34444433222233
Q ss_pred eCCcccccccccCceEEEEehHhhccCCHHH
Q 013271 230 HRLGKNLIGAFYQPQCVLVDTDTLNTLPDRE 260 (446)
Q Consensus 230 ~~~~K~~ig~~~~P~~viiDp~ll~tlP~~~ 260 (446)
...-+-++| |.=|+. |.-.+=..||..+
T Consensus 222 iAEP~AlIG-FAGpRV--IEQTire~LPegf 249 (294)
T COG0777 222 IAEPGALIG-FAGPRV--IEQTIREKLPEGF 249 (294)
T ss_pred ecCcccccc-cCcchh--hhhhhcccCCcch
Confidence 333345555 444543 2334445677654
No 170
>PLN02564 6-phosphofructokinase
Probab=44.74 E-value=51 Score=35.46 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh-hcCCCe--EEEEcCCc
Q 013271 163 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS-YLRGVS--FIQIPTTV 214 (446)
Q Consensus 163 ~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~-~~~g~p--~i~IPTTl 214 (446)
..+++++.+++.++| .++.|||--.++.|..++-. -.+++| +|.||=|.
T Consensus 164 ~~~~iv~~L~~~~Id---~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTI 215 (484)
T PLN02564 164 DTSKIVDSIQDRGIN---QVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTI 215 (484)
T ss_pred hHHHHHHHHHHhCCC---EEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccc
Confidence 678899999999999 99999999999988777532 235655 99999985
No 171
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=44.70 E-value=50 Score=32.58 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCCCe-eEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeE
Q 013271 129 LYLDKVTDALTRGNPNV-SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 207 (446)
Q Consensus 129 ~~~~~v~~~L~~~gi~~-~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~ 207 (446)
...+-+++.|.+.|..- .+.+. +.+. +.+.+.+.++++.+...++| +|+++|.-...-+.+.. ...+|+
T Consensus 15 ~~~~gf~~~L~~~g~~~~~~~~~-~~~a--~~d~~~~~~~~~~l~~~~~D---lIi~~gt~aa~~~~~~~----~~~iPV 84 (294)
T PF04392_consen 15 DIVRGFKDGLKELGYDEKNVEIE-YKNA--EGDPEKLRQIARKLKAQKPD---LIIAIGTPAAQALAKHL----KDDIPV 84 (294)
T ss_dssp HHHHHHHHHHHHTT--CCCEEEE-EEE---TT-HHHHHHHHHHHCCTS-S---EEEEESHHHHHHHHHH-----SS-S-E
T ss_pred HHHHHHHHHHHHcCCccccEEEE-EecC--CCCHHHHHHHHHHHhcCCCC---EEEEeCcHHHHHHHHhc----CCCcEE
Confidence 36777888898888522 12322 3333 33678888888888777777 99999876655555432 223898
Q ss_pred EEEcC
Q 013271 208 IQIPT 212 (446)
Q Consensus 208 i~IPT 212 (446)
+....
T Consensus 85 Vf~~V 89 (294)
T PF04392_consen 85 VFCGV 89 (294)
T ss_dssp EEECE
T ss_pred EEEec
Confidence 87765
No 172
>PRK04155 chaperone protein HchA; Provisional
Probab=44.66 E-value=1.7e+02 Score=29.20 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=26.6
Q ss_pred cceEEEEcC-ccHHHH------HHHHHHhhcCCCeEEEEcCCc
Q 013271 179 RCTFVALGG-GVIGDM------CGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 179 ~~~IIAiGG-Gsv~D~------aK~iAa~~~~g~p~i~IPTTl 214 (446)
-|+|+--|| |...|+ .+++...+..+.++.+|+...
T Consensus 148 YDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGP 190 (287)
T PRK04155 148 YAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGP 190 (287)
T ss_pred ccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHH
Confidence 348888888 666764 555555677899999997764
No 173
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=44.50 E-value=95 Score=28.65 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=39.4
Q ss_pred EEEEEECCCc---h-hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCc
Q 013271 117 KVLVVTNNTV---A-PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGG 188 (446)
Q Consensus 117 ~vliVtd~~v---~-~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGG 188 (446)
.++.|+|... + +.-++.+.+.|+++|-++ ..+.++++ +.+.+.+.+..+.+..+| +||-.||=
T Consensus 11 ~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag~~~-~~~~iV~D-----~~~~I~~~l~~~~~~~~D---vvlttGGT 77 (169)
T COG0521 11 AVVTVSDRRSTGEYEDKSGPLLVELLEEAGHNV-AAYTIVPD-----DKEQIRATLIALIDEDVD---VVLTTGGT 77 (169)
T ss_pred EEEEEecccccCCccccchhHHHHHHHHcCCcc-ceEEEeCC-----CHHHHHHHHHHHhcCCCC---EEEEcCCc
Confidence 4666777641 2 236788889999998433 24455553 345555555555444477 99998884
No 174
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=44.25 E-value=2.7e+02 Score=28.63 Aligned_cols=75 Identities=9% Similarity=0.134 Sum_probs=47.7
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
+++..+ +.+++.++++...+.. ..+.+.+.+++.|+ ++.. ..++... ....++...+.+++..++| +||-
T Consensus 169 ~~l~~~-~~k~vaii~~~~~~g~~~~~~~~~~l~~~gi--~i~~~~~~~~~~--~~~~d~~~~l~~i~~~~~d---vIil 240 (410)
T cd06363 169 QLLQEF-GWNWVAFLGSDDEYGRDGLQLFSELIANTGI--CIAYQGLIPLDT--DPETDYQQILKQINQTKVN---VIVV 240 (410)
T ss_pred HHHHHC-CCcEEEEEEeCChhHHHHHHHHHHHHHHCCe--EEEEEEEecCCC--chHHHHHHHHHHHhcCCCe---EEEE
Confidence 444443 4688888887665544 67889999999884 3321 2233211 1345678888888887777 7776
Q ss_pred EcCcc
Q 013271 185 LGGGV 189 (446)
Q Consensus 185 iGGGs 189 (446)
.+.+.
T Consensus 241 ~~~~~ 245 (410)
T cd06363 241 FASRQ 245 (410)
T ss_pred EcChH
Confidence 66553
No 175
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=43.39 E-value=2.8e+02 Score=26.15 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCcc-HHH-HHHHHHHhhcCCC
Q 013271 128 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV-IGD-MCGYAAASYLRGV 205 (446)
Q Consensus 128 ~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGs-v~D-~aK~iAa~~~~g~ 205 (446)
..+.+.+.+.+++.| +.+.+...+ .+ .+.+.-.+.++.+.+.++| .||-.+... .+| ..+. ....++
T Consensus 15 ~~~~~gi~~~~~~~g--~~~~~~~~~-~~--~~~~~~~~~i~~l~~~~vd---giIi~~~~~~~~~~~~~~---~~~~~i 83 (275)
T cd06320 15 RSLKEGYENEAKKLG--VSVDIQAAP-SE--GDQQGQLSIAENMINKGYK---GLLFSPISDVNLVPAVER---AKKKGI 83 (275)
T ss_pred HHHHHHHHHHHHHhC--CeEEEEccC-CC--CCHHHHHHHHHHHHHhCCC---EEEECCCChHHhHHHHHH---HHHCCC
Confidence 336677888888888 444332222 22 2345556777778888898 877554432 222 2232 235799
Q ss_pred eEEEEcCC
Q 013271 206 SFIQIPTT 213 (446)
Q Consensus 206 p~i~IPTT 213 (446)
|+|.+-+.
T Consensus 84 PvV~~~~~ 91 (275)
T cd06320 84 PVVNVNDK 91 (275)
T ss_pred eEEEECCC
Confidence 99998665
No 176
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=43.19 E-value=1.5e+02 Score=29.37 Aligned_cols=80 Identities=10% Similarity=-0.005 Sum_probs=50.2
Q ss_pred CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 114 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
+.+++.++.+..-+.. +.+.+.+.+++.|+ ++.. ..++.+ .......++.+++.++| .|+..+.+.
T Consensus 143 ~~~~va~l~~~~~~g~~~~~~~~~~~~~~G~--~vv~~~~~~~~-----~~d~~~~v~~l~~~~~d---~v~~~~~~~-- 210 (344)
T cd06345 143 GFKTAAIVAEDAAWGKGIDAGIKALLPEAGL--EVVSVERFSPD-----TTDFTPILQQIKAADPD---VIIAGFSGN-- 210 (344)
T ss_pred CCceEEEEecCchhhhHHHHHHHHHHHHcCC--eEEEEEecCCC-----CCchHHHHHHHHhcCCC---EEEEeecCc--
Confidence 4688999988776655 77888889998884 3322 233322 22455666677778887 777665543
Q ss_pred HHHHHHHHhhcCCC
Q 013271 192 DMCGYAAASYLRGV 205 (446)
Q Consensus 192 D~aK~iAa~~~~g~ 205 (446)
|.+.++......|.
T Consensus 211 ~~~~~~~~~~~~g~ 224 (344)
T cd06345 211 VGVLFTQQWAEQKV 224 (344)
T ss_pred hHHHHHHHHHHcCC
Confidence 45555544444554
No 177
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=43.07 E-value=1.9e+02 Score=28.56 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=48.7
Q ss_pred hHhhhcC-CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEE
Q 013271 107 DLLQKHV-QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 183 (446)
Q Consensus 107 ~~l~~~~-~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~II 183 (446)
+++.... +.+|+.+|++...+.. ..+.+.+.+++.|+ ++.. ..++. ...+....+..+++.++| +|+
T Consensus 132 ~~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~--~v~~~~~~~~-----~~~d~~~~v~~l~~~~~d---~i~ 201 (345)
T cd06338 132 EMLVALDPRPKKVAILYADDPFSQDVAEGAREKAEAAGL--EVVYDETYPP-----GTADLSPLISKAKAAGPD---AVV 201 (345)
T ss_pred HHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHHcCC--EEEEEeccCC-----CccchHHHHHHHHhcCCC---EEE
Confidence 3444432 2688988888775554 67888888998884 4322 22332 223456667777888888 776
Q ss_pred EEcCccHHHHHHHHH
Q 013271 184 ALGGGVIGDMCGYAA 198 (446)
Q Consensus 184 AiGGGsv~D~aK~iA 198 (446)
-.+.+. |...++-
T Consensus 202 ~~~~~~--~~~~~~~ 214 (345)
T cd06338 202 VAGHFP--DAVLLVR 214 (345)
T ss_pred ECCcch--hHHHHHH
Confidence 655443 5555443
No 178
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=42.86 E-value=33 Score=32.90 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHH--HcCCCCCCCCCCCHHHHHHHHHHhHhhcCCceEEEeecCCCCcee
Q 013271 368 IDDSIVKRVHNILQ--QAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCV 426 (446)
Q Consensus 368 ~~~~~~~~i~~ll~--~lGlP~~~~~~i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~ 426 (446)
|+.+..++|+.+|- |+.||+.+.|..+.-.+++.|+|-. + ||.. ||+..
T Consensus 101 ISAKvm~~ikavLgaTKiDLPVDINDPYDlGLLLRhLRHHS---N------LLAn-IgdP~ 151 (238)
T PF02084_consen 101 ISAKVMEDIKAVLGATKIDLPVDINDPYDLGLLLRHLRHHS---N------LLAN-IGDPE 151 (238)
T ss_pred ccHHHHHHHHHHhcccccccccccCChhhHHHHHHHHHHHH---H------HHhh-cCCHH
Confidence 56678899999984 7889998876566666666665532 1 4565 88873
No 179
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=42.80 E-value=2.4e+02 Score=27.92 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=44.3
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
+++.+. .++++.+|+...-+.. ..+.+.+.+++.|+ ++- ...++ +........+.+++..++| .|+-
T Consensus 125 ~~~~~~-~~~~vail~~d~~~g~~~~~~~~~~~~~~G~--~vv~~~~~~-----~~~~d~~~~v~~l~~~~pd---~v~~ 193 (334)
T cd06356 125 PYMMEK-YGKKVYTIAADYNFGQISAEWVRKIVEENGG--EVVGEEFIP-----LDVSDFGSTIQKIQAAKPD---FVMS 193 (334)
T ss_pred HHHHHc-cCCeEEEECCCchhhHHHHHHHHHHHHHcCC--EEEeeeecC-----CCchhHHHHHHHHHhcCCC---EEEE
Confidence 344443 3577777765544443 67778888999884 332 22222 2345677778888888988 7776
Q ss_pred EcCc
Q 013271 185 LGGG 188 (446)
Q Consensus 185 iGGG 188 (446)
.+-|
T Consensus 194 ~~~~ 197 (334)
T cd06356 194 ILVG 197 (334)
T ss_pred eccC
Confidence 5433
No 180
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=42.80 E-value=1.5e+02 Score=29.21 Aligned_cols=85 Identities=19% Similarity=0.148 Sum_probs=50.5
Q ss_pred HhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 108 LLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 108 ~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
++.+. +.+|+.++.....+.. ..+.+.+.+++.|. ++. ...++ ....+....+..+++.++| +|+-.
T Consensus 129 ~~~~~-~~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~--~vv~~~~~~-----~~~~d~~~~v~~l~~~~~d---~v~~~ 197 (334)
T cd06327 129 ALVKA-GGKKWFFLTADYAFGHSLERDARKVVKANGG--KVVGSVRHP-----LGTSDFSSYLLQAQASGAD---VLVLA 197 (334)
T ss_pred HHHHh-cCCeEEEEecchHHhHHHHHHHHHHHHhcCC--EEcCcccCC-----CCCccHHHHHHHHHhCCCC---EEEEe
Confidence 34443 4688888887766554 77888888988884 321 11222 2234566677777888888 66665
Q ss_pred cCccHHHHHHHHHHhhcCCC
Q 013271 186 GGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g~ 205 (446)
|.| -|.+.++......|.
T Consensus 198 ~~~--~~~~~~~~~~~~~g~ 215 (334)
T cd06327 198 NAG--ADTVNAIKQAAEFGL 215 (334)
T ss_pred ccc--hhHHHHHHHHHHhCC
Confidence 544 345555443333343
No 181
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=42.68 E-value=2.9e+02 Score=25.93 Aligned_cols=75 Identities=9% Similarity=0.122 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcC---CCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCe
Q 013271 130 YLDKVTDALTRG---NPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 206 (446)
Q Consensus 130 ~~~~v~~~L~~~---gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p 206 (446)
+.+-+.+.+++. | +.+++.+++... +.+...+.++.+...++| .||..+.... .+.+.+..+...++|
T Consensus 17 ~~~~i~~~~~~~~~~g--~~~~l~i~~~~~---~~~~~~~~~~~~~~~~vd---giIi~~~~~~-~~~~~l~~~~~~~iP 87 (272)
T cd06300 17 MLDEFKAQAKELKKAG--LISEFIVTSADG---DVAQQIADIRNLIAQGVD---AIIINPASPT-ALNPVIEEACEAGIP 87 (272)
T ss_pred HHHHHHHHHHhhhccC--CeeEEEEecCCC---CHHHHHHHHHHHHHcCCC---EEEEeCCChh-hhHHHHHHHHHCCCe
Confidence 566666777777 7 434445544322 345566777777888898 8888775432 112222223357999
Q ss_pred EEEEcCC
Q 013271 207 FIQIPTT 213 (446)
Q Consensus 207 ~i~IPTT 213 (446)
+|.+-+.
T Consensus 88 vv~~~~~ 94 (272)
T cd06300 88 VVSFDGT 94 (272)
T ss_pred EEEEecC
Confidence 9999654
No 182
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=42.27 E-value=2.7e+02 Score=29.44 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=56.8
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHH-cCCCCcceEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFV 183 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~-~~~dr~~~II 183 (446)
++++.+ +.+++.+|++..-+.. ..+.+.+.+++.|+ .+. ...++. .++......++..+++ .+++ +||
T Consensus 167 ~ll~~~-~W~~Vaii~~~~~yG~~~~~~~~~~~~~~gi--~i~~~~~i~~---~~~~~d~~~~l~~l~~~~~a~---vVv 237 (458)
T cd06375 167 EILRFF-NWTYVSTVASEGDYGETGIEAFEQEARLRNI--CIATSEKVGR---SADRKSYDSVIRKLLQKPNAR---VVV 237 (458)
T ss_pred HHHHHC-CCeEEEEEEeCchHHHHHHHHHHHHHHHCCe--eEEEEEEecC---CCCHHHHHHHHHHHhccCCCE---EEE
Confidence 455444 4688888887655544 67888888888885 332 122332 2344566677776654 4666 777
Q ss_pred EEcCccHHHHHHHHHHhhcCCCeEEEE
Q 013271 184 ALGGGVIGDMCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 184 AiGGGsv~D~aK~iAa~~~~g~p~i~I 210 (446)
..|. .-|+..++..+...|+...-|
T Consensus 238 l~~~--~~~~~~ll~~a~~~g~~~~wi 262 (458)
T cd06375 238 LFTR--SEDARELLAAAKRLNASFTWV 262 (458)
T ss_pred EecC--hHHHHHHHHHHHHcCCcEEEE
Confidence 6554 467777765556666654444
No 183
>PLN02727 NAD kinase
Probab=42.26 E-value=45 Score=38.56 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=50.6
Q ss_pred CCCEEEEEECCCchhH-HHHHHHHHHhcC-CCCeeEEEEEeCCCCC----CCcHHHHHH----HHHHHHHcCCCCcceEE
Q 013271 114 QGKKVLVVTNNTVAPL-YLDKVTDALTRG-NPNVSVENVILPDGEN----YKNMDTLMK----VFDKAIESRLDRRCTFV 183 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~-~~~~v~~~L~~~-gi~~~v~~~i~~~ge~----~~t~~~v~~----~~~~~~~~~~dr~~~II 183 (446)
..++++||+-..-... ...++.+.|.+. |+ +| ++-+.... .+.+..... -.+.+ ...+| +||
T Consensus 677 p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi--~V--~VE~~~a~~l~~~~~~~~~~~~~~~~~~el-~~~~D---LVI 748 (986)
T PLN02727 677 TPKTVLLLKKLGQELMEEAKEVASFLYHQEKM--NV--LVEPDVHDIFARIPGFGFVQTFYSQDTSDL-HERVD---FVA 748 (986)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCe--EE--EEecchHHHhhccccccccceecccchhhc-ccCCC---EEE
Confidence 4688999988765222 678888899886 74 33 22111100 000000000 00111 12455 999
Q ss_pred EEcC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 184 ALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 184 AiGG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
.||| |+++-++...+ ...+|++.|.+.
T Consensus 749 vLGGDGTlLrAar~~~---~~~iPILGINlG 776 (986)
T PLN02727 749 CLGGDGVILHASNLFR---GAVPPVVSFNLG 776 (986)
T ss_pred EECCcHHHHHHHHHhc---CCCCCEEEEeCC
Confidence 9998 88888887652 467899888754
No 184
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=42.08 E-value=2.4e+02 Score=26.34 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=42.7
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
+++... +.+++.++.+...+.. ..+-+.+.+++.|+ ++.. ..++.++ +.....++.+++.+.+ +|+.
T Consensus 129 ~~l~~~-~~~~v~iv~~~~~~~~~~~~~~~~~~~~~g~--~i~~~~~~~~~~-----~~~~~~~~~l~~~~~~---~v~~ 197 (299)
T cd04509 129 DYIKEY-NWKKVAILYDDDSYGRGLLEAFKAAFKKKGG--TVVGEEYYPLGT-----TDFTSLLQKLKAAKPD---VIVL 197 (299)
T ss_pred HHHHHc-CCcEEEEEecCchHHHHHHHHHHHHHHHcCC--EEEEEecCCCCC-----ccHHHHHHHHHhcCCC---EEEE
Confidence 455544 4688888877654333 56777788888874 3321 2222211 3455666666666666 8888
Q ss_pred EcCc
Q 013271 185 LGGG 188 (446)
Q Consensus 185 iGGG 188 (446)
.+.+
T Consensus 198 ~~~~ 201 (299)
T cd04509 198 CGSG 201 (299)
T ss_pred cccc
Confidence 7774
No 185
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=42.02 E-value=1.6e+02 Score=29.13 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=46.7
Q ss_pred hhHhhhcCCCCEEEEE-ECCCchh-HHHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceE
Q 013271 106 PDLLQKHVQGKKVLVV-TNNTVAP-LYLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 182 (446)
Q Consensus 106 ~~~l~~~~~~k~vliV-td~~v~~-~~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~I 182 (446)
.+++.+. +.+|+.++ .+...+. ...+.+++.+++.|+ ++.. ..++.+ ..+....+..+++.++| +|
T Consensus 124 ~~~l~~~-g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~G~--~v~~~~~~~~~-----~~d~~~~~~~i~~~~pd---aV 192 (341)
T cd06341 124 GDFAKDQ-GGTRAVALVTALSAAVSAAAALLARSLAAAGV--SVAGIVVITAT-----APDPTPQAQQAAAAGAD---AI 192 (341)
T ss_pred HHHHHHc-CCcEEEEEEeCCcHHHHHHHHHHHHHHHHcCC--ccccccccCCC-----CCCHHHHHHHHHhcCCC---EE
Confidence 4555554 36676666 4543233 367778889998885 3222 222221 23344556666777787 88
Q ss_pred EEEcCc-cHHHHHHHHH
Q 013271 183 VALGGG-VIGDMCGYAA 198 (446)
Q Consensus 183 IAiGGG-sv~D~aK~iA 198 (446)
+..+.+ ....+.|.+.
T Consensus 193 ~~~~~~~~a~~~~~~~~ 209 (341)
T cd06341 193 ITVLDAAVCASVLKAVR 209 (341)
T ss_pred EEecChHHHHHHHHHHH
Confidence 877666 5555555443
No 186
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=41.64 E-value=2.3e+02 Score=28.50 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=42.8
Q ss_pred CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCc
Q 013271 114 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGG 188 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGG 188 (446)
+.+|+.+++....+.. ..+.+.+.+++.|+ ++. ...++ ....+....+.++++.++| .|+..+.|
T Consensus 133 g~k~v~~l~~d~~~g~~~~~~~~~~~~~~G~--~vv~~~~~~-----~~~~D~s~~v~~l~~~~pD---av~~~~~~ 199 (359)
T TIGR03407 133 GAKRFFLLGSDYVFPRTANKIIKAYLKSLGG--TVVGEDYTP-----LGHTDFQTIINKIKAFKPD---VVFNTLNG 199 (359)
T ss_pred CCceEEEecCccHHHHHHHHHHHHHHHHcCC--EEEeeEEec-----CChHhHHHHHHHHHHhCCC---EEEEeccC
Confidence 3488888887654443 66778888999884 432 22222 2346677888888899998 77765444
No 187
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.64 E-value=2.4e+02 Score=28.09 Aligned_cols=81 Identities=15% Similarity=0.035 Sum_probs=49.8
Q ss_pred CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 114 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
+.+++.+|.+...+.. ..+.+++.+++.|+++ +....++.+ ..+....+..+++.++| +|+..+.+ .|
T Consensus 143 g~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v-v~~~~~~~~-----~~d~~~~v~~i~~~~~d---~v~~~~~~--~~ 211 (362)
T cd06343 143 PNAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEI-VAETSYEVT-----EPDFDSQVAKLKAAGAD---VVVLATTP--KF 211 (362)
T ss_pred CCceEEEEEeccHHHHHHHHHHHHHHHHcCCeE-EEEeeecCC-----CccHHHHHHHHHhcCCC---EEEEEcCc--HH
Confidence 3688888877665544 7788888899888532 222333332 23455667777888888 88877665 34
Q ss_pred HHHHHHHhhcCCC
Q 013271 193 MCGYAAASYLRGV 205 (446)
Q Consensus 193 ~aK~iAa~~~~g~ 205 (446)
.+.++-.....|.
T Consensus 212 ~~~~~~~~~~~g~ 224 (362)
T cd06343 212 AAQAIRKAAELGW 224 (362)
T ss_pred HHHHHHHHHHcCC
Confidence 4545543333443
No 188
>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.
Probab=41.03 E-value=53 Score=26.86 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh----hcCCCeEEEEcCC
Q 013271 162 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS----YLRGVSFIQIPTT 213 (446)
Q Consensus 162 ~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~----~~~g~p~i~IPTT 213 (446)
.....+...+++.+.- .|-|+|.|.+.-..|.+|.+ -..|+.++++|.=
T Consensus 14 ~vAgAIa~~lre~~~v---~lqaiGa~AvnqAvKAIAiAR~~l~~~g~dl~~~P~F 66 (86)
T PF04232_consen 14 AVAGAIAGVLREGGKV---ELQAIGAGAVNQAVKAIAIARGYLAPDGIDLVCVPAF 66 (86)
T ss_dssp HHHHHHHHHHHHTSEE---EEEE-SHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCcE---EEEEECHHHHHHHHHHHHHHHHhhhhhCceEEEEeeE
Confidence 4556677777877766 89999999999999999864 2578999999954
No 189
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=40.39 E-value=1.6e+02 Score=33.70 Aligned_cols=62 Identities=8% Similarity=0.203 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh--------------------cCCCeEEEEcCCcC---
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVM--- 215 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~--------------------~~g~p~i~IPTTl~--- 215 (446)
++.+...++++.++++++| .+|.|||--.++.|..+..-+ ..++++|.||=|.-
T Consensus 81 ~~~e~~~~a~~~L~~~~Id---~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl 157 (762)
T cd00764 81 REREGRLQAAYNLIQRGIT---NLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDF 157 (762)
T ss_pred cCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCC
Confidence 3456788999999999999 999999999998886442111 23789999999963
Q ss_pred cccccccc
Q 013271 216 AQVDSSVG 223 (446)
Q Consensus 216 A~tds~v~ 223 (446)
.+||-++|
T Consensus 158 ~gTD~TiG 165 (762)
T cd00764 158 CGTDMTIG 165 (762)
T ss_pred CCCcCCCC
Confidence 46665555
No 190
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=40.02 E-value=1.4e+02 Score=29.50 Aligned_cols=82 Identities=15% Similarity=0.091 Sum_probs=46.4
Q ss_pred hHhhhcC-CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHV-QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~-~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
+++.... +.+++.++.....+.. ..+.+.+.+++.|+.+++..... ...........++.+++.++| .|+.
T Consensus 129 ~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~g~~~~~v~~~~----~~~~~~d~~~~v~~i~~~~~d---~ii~ 201 (346)
T cd06330 129 LYAAKLDKKAKTWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQW----PKLGAPDYGSEITALLAAKPD---AIFS 201 (346)
T ss_pred HHHHHhCcCccEEEEECCchHHHHHHHHHHHHHHHHhCCCCeeccccc----CCCCCcccHHHHHHHHhcCCC---EEEE
Confidence 3444432 2578888876655443 66778888888753222211111 112335666667777888888 8887
Q ss_pred EcCccHHHHHHHH
Q 013271 185 LGGGVIGDMCGYA 197 (446)
Q Consensus 185 iGGGsv~D~aK~i 197 (446)
++.| .|.+.++
T Consensus 202 ~~~~--~~~~~~~ 212 (346)
T cd06330 202 SLWG--GDLVTFV 212 (346)
T ss_pred eccc--ccHHHHH
Confidence 7644 2344444
No 191
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=39.89 E-value=3.7e+02 Score=26.23 Aligned_cols=89 Identities=22% Similarity=0.323 Sum_probs=49.6
Q ss_pred CCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHH
Q 013271 115 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 193 (446)
Q Consensus 115 ~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~ 193 (446)
..++=+++-.+ .++ +.++-..-++..| ++++ -+++-|-. -+..+-..+...+..+.+ ++|.+-| .=.-+
T Consensus 117 ~g~vgvlsAGT-SDlPvAeEa~~tae~lG--~ev~-~~~DvGVA--GiHRLl~~l~r~~~~~~~---~lIVvAG-MEGaL 186 (254)
T COG1691 117 GGKVGVLSAGT-SDLPVAEEAAVTAEELG--VEVQ-KVYDVGVA--GIHRLLSALKRLKIEDAD---VLIVVAG-MEGAL 186 (254)
T ss_pred CceEEEEecCC-CCcchHHHHHHHHHHhC--ceEE-EEEeeccc--hHHhhhhHHHHHHhhCCC---eEEEEcc-cccch
Confidence 45665666544 455 7777777788888 4554 33454443 333333333444555555 6665533 11222
Q ss_pred HHHHHHhhcCCCeEEEEcCCcC
Q 013271 194 CGYAAASYLRGVSFIQIPTTVM 215 (446)
Q Consensus 194 aK~iAa~~~~g~p~i~IPTTl~ 215 (446)
-..+|. .-.+|+|.+||+.+
T Consensus 187 Psvvag--LvD~PVIavPTsVG 206 (254)
T COG1691 187 PSVVAG--LVDVPVIAVPTSVG 206 (254)
T ss_pred HHHHHh--ccCCCeEecccccc
Confidence 233332 46899999999954
No 192
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=39.71 E-value=1.2e+02 Score=33.25 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=40.1
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHH--HHHHHHHcCCCCcceEEEE
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMK--VFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~--~~~~~~~~~~dr~~~IIAi 185 (446)
.+.|+||.| +.+...+.++++|.+.|+ .|.+. +..++++++ +++.++...+| ++|||
T Consensus 445 ~~eRvLVTt---LTKkmAEdLT~Yl~e~gi--kv~Yl-------HSdidTlER~eIirdLR~G~~D---vLVGI 503 (663)
T COG0556 445 KNERVLVTT---LTKKMAEDLTEYLKELGI--KVRYL-------HSDIDTLERVEIIRDLRLGEFD---VLVGI 503 (663)
T ss_pred cCCeEEEEe---ehHHHHHHHHHHHHhcCc--eEEee-------eccchHHHHHHHHHHHhcCCcc---EEEee
Confidence 467888874 556789999999999995 55543 224444443 45666777777 99996
No 193
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=39.62 E-value=1.7e+02 Score=29.95 Aligned_cols=115 Identities=11% Similarity=0.081 Sum_probs=66.8
Q ss_pred CCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHH
Q 013271 91 QRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 168 (446)
Q Consensus 91 ~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~ 168 (446)
+..+.+.+.+..... -++++.+ +.+++.+++|.. +.+ ..+.+.+.+++.|. +|...........+........+
T Consensus 94 ~~~f~~~~~p~~~~ai~d~i~~~-~wk~vailYdsd-~gl~~lq~l~~~~~~~g~--~V~~~~~~~i~~~~~~~d~~~~L 169 (370)
T cd06389 94 THPFVIQMRPDLKGALLSLIEYY-QWDKFAYLYDSD-RGLSTLQAVLDSAAEKKW--QVTAINVGNINNDRKDEAYRSLF 169 (370)
T ss_pred CCceEEEecchhhhHHHHHHHhc-CCcEEEEEecCc-hHHHHHHHHHHhhccCCc--eEEEEEeecCCCccchHHHHHHH
Confidence 344556666663333 5666665 589999999965 554 67888888888873 33222222212123345777888
Q ss_pred HHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh---cCCCeEEEEcCCc
Q 013271 169 DKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTV 214 (446)
Q Consensus 169 ~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~---~~g~p~i~IPTTl 214 (446)
..++..+.+ .||- .+..-|+..++-.+. +.+..+.-|-|++
T Consensus 170 ~~ik~~~~~---~Iil--~~~~~~~~~il~qa~~~gm~~~~y~~il~~~ 213 (370)
T cd06389 170 QDLENKKER---RVIL--DCERDKVNDIVDQVITIGKHVKGYHYIIANL 213 (370)
T ss_pred HHhccccce---EEEE--ECCHHHHHHHHHHHHHhCccccceEEEEccC
Confidence 888877776 5554 455656555543322 2233444355664
No 194
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=39.50 E-value=81 Score=26.09 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=31.7
Q ss_pred CEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCC
Q 013271 116 KKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGE 156 (446)
Q Consensus 116 k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge 156 (446)
.|+|++++.++.-. ...+|.+.|++.|+.++++.......+
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~ 44 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIK 44 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccc
Confidence 58999999998876 679999999999975566555554433
No 195
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=39.35 E-value=2.1e+02 Score=28.85 Aligned_cols=44 Identities=5% Similarity=-0.213 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 164 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 164 v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
..++.+.+++.++| +||+.++...+..++. ....++|++.+-|-
T Consensus 93 ~~~l~~~l~~~~pD---~Vi~~~~~~~~~~~~~---~~~~~ip~~~~~td 136 (380)
T PRK13609 93 RKRLKLLLQAEKPD---IVINTFPIIAVPELKK---QTGISIPTYNVLTD 136 (380)
T ss_pred HHHHHHHHHHhCcC---EEEEcChHHHHHHHHH---hcCCCCCeEEEeCC
Confidence 35677778888888 9999888776655432 23456888866553
No 196
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=38.49 E-value=2.8e+02 Score=27.63 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=45.6
Q ss_pred HhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHc------------
Q 013271 108 LLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES------------ 174 (446)
Q Consensus 108 ~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~------------ 174 (446)
++.+. +.+|+.++++...+.. ..+.+.+.+++.|.++ +....++ +...+....+..++..
T Consensus 118 ~~~~~-g~k~vaii~~~~~~g~~~~~~f~~~~~~~G~~v-v~~~~~~-----~~~~d~~~~i~~i~~~~~~~~~~~~~~~ 190 (336)
T cd06339 118 YARSQ-GKRRPLVLAPDGAYGQRVADAFRQAWQQLGGTV-VAIESYD-----PSPTDLSDAIRRLLGVDDSEQRIAQLKS 190 (336)
T ss_pred HHHhc-CccceEEEecCChHHHHHHHHHHHHHHHcCCce-eeeEecC-----CCHHHHHHHHHHHhccccchhhhhhhhh
Confidence 44443 4789999988665554 6788888898888532 2222333 2334566666666665
Q ss_pred ---------CCCCcceEEEEcCcc
Q 013271 175 ---------RLDRRCTFVALGGGV 189 (446)
Q Consensus 175 ---------~~dr~~~IIAiGGGs 189 (446)
++| .|+.+|-+.
T Consensus 191 ~~~~~~~~~~~d---~v~~~~~~~ 211 (336)
T cd06339 191 LESEPRRRQDID---AIDAVALPD 211 (336)
T ss_pred cccCccccCCCC---cEEEEecCh
Confidence 677 887777765
No 197
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=38.23 E-value=2.2e+02 Score=28.31 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=53.2
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCC---CCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGEN---YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~---~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
..-.+++|++...+.++..+.+.+-..+ +.+. ....+..+ ..+.....++.+.+++.++| +|+..|.. ..
T Consensus 28 ~~~~~~~tg~h~~~~~~~~~~~~~~~~~--~~~~-l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD---vV~~~g~~-~~ 100 (363)
T cd03786 28 FELVLVVTGQHYDMEMGVTFFEILFIIK--PDYD-LLLGSDSQSLGAQTAGLLIGLEAVLLEEKPD---LVLVLGDT-NE 100 (363)
T ss_pred CCEEEEEeCCCCChhhhHHHHHhhCCCC--CCEE-EecCCCCCCHHHHHHHHHHHHHHHHHHhCCC---EEEEeCCc-hH
Confidence 3557789998877777666666552222 2322 11222111 22445667777788888888 99999754 33
Q ss_pred HHHHHHHHhhcCCCeEEEEcC
Q 013271 192 DMCGYAAASYLRGVSFIQIPT 212 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~IPT 212 (446)
-++..+++ ...++|++.+.-
T Consensus 101 ~~~~~~aa-~~~~iPvv~~~~ 120 (363)
T cd03786 101 TLAAALAA-FKLGIPVAHVEA 120 (363)
T ss_pred HHHHHHHH-HHcCCCEEEEec
Confidence 34444443 345899987654
No 198
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=38.09 E-value=4.2e+02 Score=27.16 Aligned_cols=18 Identities=6% Similarity=-0.029 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 013271 370 DSIVKRVHNILQQAKLPT 387 (446)
Q Consensus 370 ~~~~~~i~~ll~~lGlP~ 387 (446)
+...+++.++.+.+|...
T Consensus 289 ~~~~~~~~~l~~~l~~~~ 306 (376)
T cd08193 289 PAAEERYAELADALGPDL 306 (376)
T ss_pred hhhHHHHHHHHHHhCCCc
Confidence 344568888888887754
No 199
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=37.77 E-value=2.4e+02 Score=25.16 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhcCCCCee-EEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPNVS-VENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG 187 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~~gi~~~-v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG 187 (446)
+-|+.||..+.-.+ ...+-..+.|.+.|+..+ +..+.+|+ .+|.=..+-..++..++| .||++|-
T Consensus 7 ~~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPG-----a~EiP~a~~~l~~s~~~D---avIaLG~ 75 (141)
T PLN02404 7 GLRFGVVVARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPG-----SFEIPVVAQRLAKSGKYD---AILCIGA 75 (141)
T ss_pred CCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCc-----HHHHHHHHHHHHhcCCCC---EEEEEEE
Confidence 46888887664333 356666678888885311 34455554 334333333333334466 9999983
No 200
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=37.71 E-value=2.9e+02 Score=28.95 Aligned_cols=114 Identities=13% Similarity=0.095 Sum_probs=54.7
Q ss_pred CceeEEEccCcCCC--hh--HhhhcCCCCEEEEEECC-Cchh-HHHHHHHHHHhcCCCCeeEEEEEeCCC-CCCCcHHHH
Q 013271 92 RSYPIYIGSGLLDH--PD--LLQKHVQGKKVLVVTNN-TVAP-LYLDKVTDALTRGNPNVSVENVILPDG-ENYKNMDTL 164 (446)
Q Consensus 92 ~~~~I~~G~g~~~~--~~--~l~~~~~~k~vliVtd~-~v~~-~~~~~v~~~L~~~gi~~~v~~~i~~~g-e~~~t~~~v 164 (446)
-+..|+.+...... .+ .++. .+.++..|.+. ...+ ...+..++...+.. . .++++... -++|-...|
T Consensus 131 l~c~I~mp~~d~~rq~~nv~~m~~--lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~---~-~~y~~gs~~gphp~p~~v 204 (397)
T PRK04346 131 LECVIYMGAEDVERQALNVFRMKL--LGAEVVPVTSGSRTLKDAVNEALRDWVTNVE---D-THYLIGSVAGPHPYPTMV 204 (397)
T ss_pred CcEEEEecCCchhhhhhHHHHHHH--CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC---C-CeEEeCCcCCCCCchHHH
Confidence 45778888764332 32 2343 57888888753 2333 33333333343311 1 12333221 123332333
Q ss_pred --------HHHHHHHHH-cCCCCcceEEEEcCccHHHHH-HHHHHhhcCCCeEEEEcCC
Q 013271 165 --------MKVFDKAIE-SRLDRRCTFVALGGGVIGDMC-GYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 165 --------~~~~~~~~~-~~~dr~~~IIAiGGGsv~D~a-K~iAa~~~~g~p~i~IPTT 213 (446)
.++.+++.+ .+-.-+.+|+++|||+.+=-. +.. .....+++|.|-..
T Consensus 205 ~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f--~~~~~v~iigVE~~ 261 (397)
T PRK04346 205 RDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPF--IDDESVRLIGVEAA 261 (397)
T ss_pred HHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHH--hhCCCCeEEEEecC
Confidence 355555543 221123588889888865322 211 22456788888543
No 201
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=37.06 E-value=1.4e+02 Score=27.11 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=44.6
Q ss_pred EECCCchhH-HHHHHHHHHhc--CCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH-
Q 013271 121 VTNNTVAPL-YLDKVTDALTR--GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY- 196 (446)
Q Consensus 121 Vtd~~v~~~-~~~~v~~~L~~--~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~- 196 (446)
|.|.+..+. .+.--.+.|.+ .++ ++..+.+|+ .+|.=-.+-..+.+.++| .||++|-=.-.|+-+|
T Consensus 4 ~~~ttf~~~~M~~gA~~~L~~~g~g~--~i~v~~VPG-----a~EiP~aak~l~~~~~~D---aVIaLG~VIrGeT~Hfd 73 (151)
T TIGR01506 4 IADTTFARYDMGGAAIDELRKHTAGI--KIIRRTVPG-----IKDLPVAAKKLLEEEGCE---MVITLGWVGPEEKDKLS 73 (151)
T ss_pred eecchhhhhhHHHHHHHHHHhcCCCC--eEEEEECCc-----HhHHHHHHHHHHhcCCCC---EEEEeceEEcCCCCcEe
Confidence 467776665 66667777877 563 444455564 223222222223345677 9999986444433322
Q ss_pred -------HHH-hhcCCCeEEEEcCC
Q 013271 197 -------AAA-SYLRGVSFIQIPTT 213 (446)
Q Consensus 197 -------iAa-~~~~g~p~i~IPTT 213 (446)
+.. ....++|++.|=|+
T Consensus 74 ~V~vs~GL~~lsl~~~~PVi~VlT~ 98 (151)
T TIGR01506 74 YHEASTGLIQVQLMTNKHVIDVTVH 98 (151)
T ss_pred HHHHHHHHHHHHhhhCCCEEEEEee
Confidence 211 23456777765444
No 202
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=36.88 E-value=1.6e+02 Score=30.83 Aligned_cols=68 Identities=26% Similarity=0.263 Sum_probs=53.4
Q ss_pred EEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCC---CCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCcc
Q 013271 118 VLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDG---ENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 189 (446)
Q Consensus 118 vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~g---e~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGs 189 (446)
+=+|+|.++... ..+.+.+.+++.|.+ ++.+.++.+| +++-.+.-+++.++++++.+.+ .=||=|||.
T Consensus 128 vGlvSDGGVHShidhl~allka~~erg~~-ei~vH~~tDGRDt~p~s~vgfLe~~l~fLr~~t~~---gkvAs~~GR 200 (531)
T KOG4513|consen 128 VGLVSDGGVHSHIDHLQALLKALAERGAK-EIRVHILTDGRDTLPGSSVGFLEADLDFLRKVTVD---GKVASGGGR 200 (531)
T ss_pred EEEecCCchhhhHHHHHHHHHHHHhcCCc-eEEEEEecCCccCCCCcchhhHHHHHHHHHHcccc---ceEeeccce
Confidence 447899998765 677888888888752 5666677665 4566777899999999999998 899999986
No 203
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.66 E-value=90 Score=34.32 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=49.8
Q ss_pred CCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHH-HHHHHHH-HHHcCCCCcceEEEEcC-cc
Q 013271 115 GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDT-LMKVFDK-AIESRLDRRCTFVALGG-GV 189 (446)
Q Consensus 115 ~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~-v~~~~~~-~~~~~~dr~~~IIAiGG-Gs 189 (446)
.+++.||....-.+. +.+++.+.|.+.++ ++. +-+. .. ..+.. ....... ....++| +||.+|| |+
T Consensus 290 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~--~v~--~~~~-~~-~~~~~~~~~~~~~~~~~~~~d---lvi~lGGDGT 360 (569)
T PRK14076 290 PTKFGIVSRIDNEEAINLALKIIKYLDSKGI--PYE--LESF-LY-NKLKNRLNEECNLIDDIEEIS---HIISIGGDGT 360 (569)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHHHCCC--EEE--Eech-hh-hhhcccccccccccccccCCC---EEEEECCcHH
Confidence 568999988665443 68888888988884 332 2111 00 00000 0000000 0001355 9999998 88
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 190 IGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
++-++... ...++|++.|.+.
T Consensus 361 ~L~aa~~~---~~~~~PilGin~G 381 (569)
T PRK14076 361 VLRASKLV---NGEEIPIICINMG 381 (569)
T ss_pred HHHHHHHh---cCCCCCEEEEcCC
Confidence 88777654 2458999998765
No 204
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=36.54 E-value=4e+02 Score=28.22 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=45.7
Q ss_pred hHhhhcCCCCEEEEEEC-CCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTN-NTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd-~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
++++.+ +.+++.+|.. ........+.+.+.+++.|+.+.. ...++.... .........++.+++.+++ +||..
T Consensus 165 ~li~~f-~W~~Vaiv~~d~~yg~~~~~~~~~~~~~~gi~I~~-~~~i~~~~~-~~~~~~~~~l~~i~~~~ar---vIvl~ 238 (469)
T cd06365 165 SLMLHF-SWTWVGLVISDDDRGEQFLSDLREEMQRNGICLAF-VEKIPVNMQ-LYLTRAEKYYNQIMTSSAK---VIIIY 238 (469)
T ss_pred HHHHhc-CCeEEEEEEecChhHHHHHHHHHHHHHHCCeEEEE-EEEecCCch-hhHHHHHHHHHHhhcCCCe---EEEEE
Confidence 455544 4677776544 444444788899999999953321 223443221 1224666777777777777 88887
Q ss_pred cCc
Q 013271 186 GGG 188 (446)
Q Consensus 186 GGG 188 (446)
|-.
T Consensus 239 ~~~ 241 (469)
T cd06365 239 GDT 241 (469)
T ss_pred cCc
Confidence 663
No 205
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=36.54 E-value=2.9e+02 Score=26.32 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=24.0
Q ss_pred CcceEEEEcCccH----HH-------------HHHHHHHhhcCCCeEEEEcCC
Q 013271 178 RRCTFVALGGGVI----GD-------------MCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 178 r~~~IIAiGGGsv----~D-------------~aK~iAa~~~~g~p~i~IPTT 213 (446)
.-|+|+--||-.. .| +.+++...+..+.|+.+|+-.
T Consensus 85 dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChg 137 (217)
T PRK11780 85 DFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIA 137 (217)
T ss_pred hCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHH
Confidence 3349999998332 22 555565567789999999544
No 206
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.44 E-value=81 Score=30.25 Aligned_cols=86 Identities=14% Similarity=0.260 Sum_probs=61.0
Q ss_pred CceeEEEccCcCCC-hhHhh----hcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQ----KHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMK 166 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~----~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~ 166 (446)
..+++.+|+-..+. -+-++ .+-..++.+|=.+.++..+..+.+.+.-+..|-.++|. .| +.|.+.+.+
T Consensus 41 E~FDYLiGEkT~~~A~eA~raAaA~LlLAk~PVISVNGN~AAL~p~e~v~La~~~~aklEVN--LF-----~RteeRv~~ 113 (256)
T COG1701 41 EAFDYLIGEKTIPPALEAIRAAAAALLLAKHPVISVNGNVAALVPEEVVELAEATGAKLEVN--LF-----YRTEERVRK 113 (256)
T ss_pred hHhHHhcccccCchHHHHHHHHHHHHHhccCCeEEEcCceeeeCcHHHHHHHHHhCCceEEE--ee-----ccCHHHHHH
Confidence 34677888887765 32221 11246889999999999888888887666666444544 33 468899999
Q ss_pred HHHHHHHcCCCCcceEEEEcC
Q 013271 167 VFDKAIESRLDRRCTFVALGG 187 (446)
Q Consensus 167 ~~~~~~~~~~dr~~~IIAiGG 187 (446)
+.+.++++|.. -+++.|-
T Consensus 114 I~e~L~~~Ga~---~vLg~~~ 131 (256)
T COG1701 114 IAEVLKEHGAK---EVLGTDP 131 (256)
T ss_pred HHHHHHhcCcc---eeecCCc
Confidence 99999999987 6877663
No 207
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=36.17 E-value=43 Score=32.25 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCc-cHHHHHHHHH
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGG-VIGDMCGYAA 198 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGG-sv~D~aK~iA 198 (446)
|+....++.+.+++.|. |+.+++.+||- ...|.++.+.
T Consensus 168 tm~~~~~viE~L~eeGi-Rd~v~v~vGGApvtq~~a~~iG 206 (227)
T COG5012 168 TMIGMKDVIELLKEEGI-RDKVIVMVGGAPVTQDWADKIG 206 (227)
T ss_pred HHHHHHHHHHHHHHcCC-ccCeEEeecCccccHHHHHHhC
Confidence 45567788999999997 78899999998 7888888774
No 208
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=35.99 E-value=5e+02 Score=26.69 Aligned_cols=54 Identities=7% Similarity=0.070 Sum_probs=31.3
Q ss_pred chhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 013271 329 GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT 387 (446)
Q Consensus 329 gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~ 387 (446)
|..++|+|++. . .-.|+..-+++..+.+--..++. .+...+++.++.+.+|+..
T Consensus 258 g~g~~Hal~~~--l-~~~~~i~HG~a~ai~lp~vl~~~--~~~~~~~~~~la~~~g~~~ 311 (379)
T TIGR02638 258 GLGLVHGMAHP--L-GAFYNTPHGVANAILLPHVMEFN--AEFTGEKYREIAKAMGVKT 311 (379)
T ss_pred hHHHHHHhhhh--h-hcCcCCChHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHhCCCC
Confidence 56778888875 3 44566665655444332222222 2345577888888888763
No 209
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=35.92 E-value=1.1e+02 Score=27.63 Aligned_cols=35 Identities=11% Similarity=-0.043 Sum_probs=25.5
Q ss_pred ceEEEEcCccHH------HHHHHHHHhhcCCCeEEEEcCCc
Q 013271 180 CTFVALGGGVIG------DMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 180 ~~IIAiGGGsv~------D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
|.++-.||.... ++.+++...+.++.++..|.+..
T Consensus 78 D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~ 118 (180)
T cd03169 78 DALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGP 118 (180)
T ss_pred CEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHH
Confidence 478877874332 35567777788999999999873
No 210
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=35.76 E-value=3.7e+02 Score=27.83 Aligned_cols=100 Identities=11% Similarity=0.059 Sum_probs=57.5
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCc-H-HHHHHHHHHHHHcCCCCcceEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKN-M-DTLMKVFDKAIESRLDRRCTFV 183 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t-~-~~v~~~~~~~~~~~~dr~~~II 183 (446)
++++.+ +.+++.+|.+..-+.. ..+.+.+.+++.|+.+. ....++.+....+ . .....+...+++.+++ +||
T Consensus 165 ~li~~~-~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa-~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~---vVv 239 (403)
T cd06361 165 HLIKKS-GWNWVGIIITDDDYGRSALETFIIQAEANGVCIA-FKEILPASLSDNTKLNRIIRTTEKIIEENKVN---VIV 239 (403)
T ss_pred HHHHHc-CCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEE-EEEEecCccCcchhHHHHHHHHHHHHhcCCCe---EEE
Confidence 455555 5688888876655544 78889999999985322 2234444322111 1 2333444446677787 777
Q ss_pred EEcCccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 184 ALGGGVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 184 AiGGGsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
..|. .-|+..++-.+...++..+-|.|.
T Consensus 240 v~~~--~~~~~~l~~~a~~~g~~~~wigs~ 267 (403)
T cd06361 240 VFAR--QFHVFLLFNKAIERNINKVWIASD 267 (403)
T ss_pred EEeC--hHHHHHHHHHHHHhCCCeEEEEEC
Confidence 7554 456666665555556655555333
No 211
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=35.65 E-value=2.2e+02 Score=28.43 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=49.1
Q ss_pred CCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 115 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 115 ~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
.+++.+|++...+.. ..+.+.+.+++.|. +|. ...++.+ ..+....+.++++.++| +|+-.+ ...|
T Consensus 144 ~~~v~~l~~~~~~g~~~~~~~~~~~~~~G~--~vv~~~~~~~~-----~~d~~~~i~~l~~~~~d---~v~~~~--~~~~ 211 (347)
T cd06340 144 LKTVALVHEDTEFGTSVAEAIKKFAKERGF--EIVEDISYPAN-----ARDLTSEVLKLKAANPD---AILPAS--YTND 211 (347)
T ss_pred CceEEEEecCchHhHHHHHHHHHHHHHcCC--EEEEeeccCCC-----CcchHHHHHHHHhcCCC---EEEEcc--cchh
Confidence 478999988776665 77888888999884 432 2223322 23556666777888888 666544 3356
Q ss_pred HHHHHHHhhcCCC
Q 013271 193 MCGYAAASYLRGV 205 (446)
Q Consensus 193 ~aK~iAa~~~~g~ 205 (446)
.+.++-.....|.
T Consensus 212 ~~~~~~~~~~~G~ 224 (347)
T cd06340 212 AILLVRTMKEQRV 224 (347)
T ss_pred HHHHHHHHHHcCC
Confidence 6666544333443
No 212
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=35.56 E-value=2.5e+02 Score=25.97 Aligned_cols=85 Identities=18% Similarity=0.025 Sum_probs=50.3
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
|+.|=+|..-.+ +.+.|.++|++.| ++|..+--.+.++..-.+...++.+.+.+..+|| .|+--|-|.-+-++
T Consensus 2 kI~IgsDhaG~~-lK~~l~~~L~~~G--~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~--GIliCGTGiG~sia-- 74 (171)
T PRK08622 2 KIAIGCDHIVTD-EKMAVSDYLKSKG--HEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADL--GVCICGTGVGISNA-- 74 (171)
T ss_pred EEEEEeCcchHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcE--EEEEcCCcHHHHHH--
Confidence 466667765444 5788999999998 5554333222233333456667777777766776 56666666555444
Q ss_pred HHHhhcCCCeEEEE
Q 013271 197 AAASYLRGVSFIQI 210 (446)
Q Consensus 197 iAa~~~~g~p~i~I 210 (446)
+--.+|+.-..+
T Consensus 75 --ANKv~GIRAA~~ 86 (171)
T PRK08622 75 --VNKVPGIRSALV 86 (171)
T ss_pred --HhcCCCeEEEEe
Confidence 222356655444
No 213
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=35.52 E-value=3.5e+02 Score=24.72 Aligned_cols=75 Identities=8% Similarity=0.155 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCe
Q 013271 127 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 206 (446)
Q Consensus 127 ~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p 206 (446)
+..+.+.+.+.+++.|+ ++ .+++... +.+...+.++.+...++| .||..+.-. .+.. .+......++|
T Consensus 14 ~~~~~~g~~~~~~~~g~--~l--~~~~~~~---~~~~~~~~~~~~~~~~~d---~ii~~~~~~-~~~~-~~~~l~~~~ip 81 (264)
T cd01537 14 FAQVLKGIEEAAKAAGY--QV--LLANSQN---DAEKQLSALENLIARGVD---GIIIAPSDL-TAPT-IVKLARKAGIP 81 (264)
T ss_pred HHHHHHHHHHHHHHcCC--eE--EEEeCCC---CHHHHHHHHHHHHHcCCC---EEEEecCCC-cchh-HHHHhhhcCCC
Confidence 34467778888888884 33 3344322 336677777777777888 888865432 2332 23334467999
Q ss_pred EEEEcCC
Q 013271 207 FIQIPTT 213 (446)
Q Consensus 207 ~i~IPTT 213 (446)
+|.+..+
T Consensus 82 ~v~~~~~ 88 (264)
T cd01537 82 VVLVDRD 88 (264)
T ss_pred EEEeccC
Confidence 9999777
No 214
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.88 E-value=2.7e+02 Score=27.53 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=45.3
Q ss_pred CCCEEEEEECC-Cchh-HHHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccH
Q 013271 114 QGKKVLVVTNN-TVAP-LYLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI 190 (446)
Q Consensus 114 ~~k~vliVtd~-~v~~-~~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv 190 (446)
+.+++.++++. ..+. ...+.+.+.+++.|+ ++. ...++.+ ..+....+..+++.++| .|+-.|.+
T Consensus 135 ~~~~v~~l~~~~~~~g~~~~~~~~~~~~~~g~--~v~~~~~~~~~-----~~d~~~~v~~i~~~~~d---~vi~~~~~-- 202 (344)
T cd06348 135 GIKRVAVFYAQDDAFSVSETEIFQKALRDQGL--NLVTVQTFQTG-----DTDFQAQITAVLNSKPD---LIVISALA-- 202 (344)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHHHHcCC--EEEEEEeeCCC-----CCCHHHHHHHHHhcCCC---EEEECCcc--
Confidence 35788888643 3233 477888889998884 332 2233322 24556667778888988 65544433
Q ss_pred HHHHHHHHHhhcCC
Q 013271 191 GDMCGYAAASYLRG 204 (446)
Q Consensus 191 ~D~aK~iAa~~~~g 204 (446)
-|.+.++-.....|
T Consensus 203 ~~~~~~~~~~~~~g 216 (344)
T cd06348 203 ADGGNLVRQLRELG 216 (344)
T ss_pred hhHHHHHHHHHHcC
Confidence 34444443333333
No 215
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=34.72 E-value=4.6e+02 Score=26.46 Aligned_cols=51 Identities=20% Similarity=0.003 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHH-HHHHHHHhhcCCCeEEEEcC
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPT 212 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D-~aK~iAa~~~~g~p~i~IPT 212 (446)
.....+++++..+.+.+-+.+|+++|+|..+= ++++... ..+.+++|.|-.
T Consensus 173 ~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~-~~~~~rvigV~~ 224 (337)
T PRK12390 173 VGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAA-DGRARRVIGIDA 224 (337)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHh-cCCCceEEEEEe
Confidence 45566777765444333346888888776543 3333321 223455665544
No 216
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=34.72 E-value=4.1e+02 Score=25.81 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=48.9
Q ss_pred hHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG 186 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG 186 (446)
++++.+ +.+++.+++|..-+..-.+.+.+.+++.|. ++....++. ++ +.....+.+++..++| .||..+
T Consensus 120 ~~~~~~-~w~~vaii~~~~~~~~~l~~~~~~~~~~g~--~v~~~~~~~----~~-~d~~~~l~~i~~~~~d---~Vi~~~ 188 (324)
T cd06368 120 DLIKYF-GWRKFVYIYDSDEGLLRLQELLDALSPKGI--QVTVRRLDD----DT-DMYRPLLKEIKREKER---RIILDC 188 (324)
T ss_pred HHHHhc-CCCEEEEEECCcHhHHHHHHHHHhhccCCc--eEEEEEecC----Cc-hHHHHHHHHHhhccCc---eEEEEC
Confidence 455443 468999999876544444556666666663 333222221 12 2677888888888888 777666
Q ss_pred CccHHHHHHHHHHhh
Q 013271 187 GGVIGDMCGYAAASY 201 (446)
Q Consensus 187 GGsv~D~aK~iAa~~ 201 (446)
-+ -|...++-...
T Consensus 189 ~~--~~~~~i~~qa~ 201 (324)
T cd06368 189 SP--ERLKEFLEQAV 201 (324)
T ss_pred CH--HHHHHHHHHHH
Confidence 43 45555554333
No 217
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.63 E-value=1.4e+02 Score=31.42 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=51.3
Q ss_pred EccCcCCC-hh---HhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHH
Q 013271 98 IGSGLLDH-PD---LLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 173 (446)
Q Consensus 98 ~G~g~~~~-~~---~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~ 173 (446)
.|.|-... .. +.++ .+.++++|+..+......+++...-.+.++. ++. .+...+......++++.+++
T Consensus 110 qG~GKTTtc~KlA~y~kk--kG~K~~LvcaDTFRagAfDQLkqnA~k~~iP----~yg--syte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 110 QGSGKTTTCTKLAYYYKK--KGYKVALVCADTFRAGAFDQLKQNATKARVP----FYG--SYTEADPVKIASEGVDRFKK 181 (483)
T ss_pred cCCCcceeHHHHHHHHHh--cCCceeEEeecccccchHHHHHHHhHhhCCe----eEe--cccccchHHHHHHHHHHHHh
Confidence 46666555 44 3343 4566666666665555778887766666642 222 22234556888999999999
Q ss_pred cCCCCcceEEEEcCcc
Q 013271 174 SRLDRRCTFVALGGGV 189 (446)
Q Consensus 174 ~~~dr~~~IIAiGGGs 189 (446)
.++| +||-==.|.
T Consensus 182 e~fd---vIIvDTSGR 194 (483)
T KOG0780|consen 182 ENFD---VIIVDTSGR 194 (483)
T ss_pred cCCc---EEEEeCCCc
Confidence 9999 887644443
No 218
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=34.16 E-value=1.4e+02 Score=26.80 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=50.6
Q ss_pred EEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHH
Q 013271 118 VLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYA 197 (446)
Q Consensus 118 vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~i 197 (446)
+.|=+|..-.+ +.+.+.++|++.| ++|..+-..+.++..-.+...++.+.+.+..+|| .|+--|-|.=+-++
T Consensus 2 I~igsDhaG~~-lK~~l~~~L~~~g--~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~--GIliCGtGiG~sia--- 73 (143)
T TIGR01120 2 IAIGSDHAGFI-LKEEIKAFLVERG--VKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDG--GILICGTGIGMSIA--- 73 (143)
T ss_pred EEEEeCcchHH-HHHHHHHHHHHCC--CEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCce--EEEEcCCcHHHHHH---
Confidence 55667765444 5788999999999 5554332222333222355667777777777776 55555555444333
Q ss_pred HHhhcCCCeEEEEcCC
Q 013271 198 AASYLRGVSFIQIPTT 213 (446)
Q Consensus 198 Aa~~~~g~p~i~IPTT 213 (446)
+--.+|+....+-..
T Consensus 74 -ANK~~GIraa~~~d~ 88 (143)
T TIGR01120 74 -ANKFAGIRAALCSEP 88 (143)
T ss_pred -HhcCCCeEEEEECCH
Confidence 222367766665443
No 219
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=34.10 E-value=2.1e+02 Score=27.64 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEc
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIP 211 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IP 211 (446)
+.+..++.++.+.+.++| +||+.| ....|.+.-+|..| ..+.|+.+-
T Consensus 42 ~~~~~~~~i~~~~~~g~d---lIi~~g-~~~~~~~~~vA~~~-p~~~F~~~d 88 (258)
T cd06353 42 EGADAERVLRELAAQGYD---LIFGTS-FGFMDAALKVAKEY-PDVKFEHCS 88 (258)
T ss_pred chHhHHHHHHHHHHcCCC---EEEECc-hhhhHHHHHHHHHC-CCCEEEECC
Confidence 567888888888888999 888854 44555555555555 466776663
No 220
>KOG3198 consensus Signal recognition particle, subunit Srp19 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.06 E-value=83 Score=28.28 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHH
Q 013271 372 IVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDD 438 (446)
Q Consensus 372 ~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~ 438 (446)
...+|.+.++.+|++..++.. .-+.||. +.|++|+.|.++ .|+.......+++.+..
T Consensus 45 ~a~eI~Dvl~~lgl~~~~E~~K~hPrD~~---------n~GRVRvqlk~e-dG~l~~~~~~sr~~~~~ 102 (152)
T KOG3198|consen 45 LAKEIADVLRALGLNCLLEPNKKHPRDFV---------NPGRVRVQLKNE-DGTLYVIAFISRKSLML 102 (152)
T ss_pred chhHHHHHHHHhCCcccccccccCchhcC---------CCceEEEEeecc-CCcEEeecchhHHHHHH
Confidence 567899999999999987632 4445542 379999999987 89977765667766643
No 221
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=34.04 E-value=2.5e+02 Score=28.56 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=28.7
Q ss_pred ceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 180 CTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 180 ~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
+.+||+||+--.|+.--+.....-++|-+.|-|-.
T Consensus 93 ~gmig~GGsgGT~lit~~m~~LPlgvPK~mVST~A 127 (401)
T COG5441 93 AGMIGMGGSGGTALITPAMRRLPLGVPKVMVSTLA 127 (401)
T ss_pred hheeecCCCcchHhhhhHHHhcCcCCcceeeeeee
Confidence 38999999988888766665667899999998874
No 222
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=34.03 E-value=42 Score=32.39 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=44.5
Q ss_pred hHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG 186 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG 186 (446)
+.+++.-.+|.++||.+..+.--++..+ +..+. .++.+++|. ..-++.++++.+.++++.-+ .=+++|+|
T Consensus 107 ~klK~iW~~rdilIVEG~~sR~GvgnDL---Fdnak---sI~rIicPs---knAf~~~d~I~~~i~~~~~~-~LiLiaLG 176 (225)
T PF08759_consen 107 EKLKQIWKDRDILIVEGEKSRSGVGNDL---FDNAK---SIKRIICPS---KNAFSKYDEILEAIKKYAKD-KLILIALG 176 (225)
T ss_pred HHHHHHhCCCcEEEEecCCeecCCCchh---hhCcc---ceEEEECCc---hhhHHHHHHHHHHHHHhCCC-cEEEEecC
Confidence 4455544689999999987654456655 44443 456677663 23467778888877766433 23667776
Q ss_pred C
Q 013271 187 G 187 (446)
Q Consensus 187 G 187 (446)
=
T Consensus 177 P 177 (225)
T PF08759_consen 177 P 177 (225)
T ss_pred C
Confidence 3
No 223
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=34.02 E-value=70 Score=33.12 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=66.3
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCG 195 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D~aK 195 (446)
+.+|||++..-+.-.+++...-.+.. .+.++.|. +.....+ .+++ .+|+.|| -++||+-
T Consensus 252 ~~~ivtGP~MP~~~r~~l~~~A~~~p---~i~I~~f~--------~~~~~ll-----~gA~---~vVSm~GYNTvCeIL- 311 (400)
T COG4671 252 KWLIVTGPFMPEAQRQKLLASAPKRP---HISIFEFR--------NDFESLL-----AGAR---LVVSMGGYNTVCEIL- 311 (400)
T ss_pred ceEEEeCCCCCHHHHHHHHHhcccCC---CeEEEEhh--------hhHHHHH-----Hhhh---eeeecccchhhhHHH-
Confidence 58899999887766777766555443 34444443 2233333 2445 8999988 4666654
Q ss_pred HHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhh
Q 013271 196 YAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGL 273 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~ 273 (446)
..+.|-+.||-+-. .+ +..+. +-..-+.=++|. -+|...+.+.++|+|+.++
T Consensus 312 ------s~~k~aLivPr~~p----~e---EQliR---------A~Rl~~LGL~dv----L~pe~lt~~~La~al~~~l 363 (400)
T COG4671 312 ------SFGKPALIVPRAAP----RE---EQLIR---------AQRLEELGLVDV----LLPENLTPQNLADALKAAL 363 (400)
T ss_pred ------hCCCceEEeccCCC----cH---HHHHH---------HHHHHhcCccee----eCcccCChHHHHHHHHhcc
Confidence 35899999998821 11 11111 111223333332 4677778899999998776
No 224
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=33.94 E-value=2.2e+02 Score=24.51 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCeeEEEE-EeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccH--HHHHHH
Q 013271 130 YLDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI--GDMCGY 196 (446)
Q Consensus 130 ~~~~v~~~L~~~gi~~~v~~~-i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv--~D~aK~ 196 (446)
-...+.+.|++.| +++... ++++ +.+.+.+.++.+.+. +| +||-.||=++ -|...-
T Consensus 20 n~~~l~~~l~~~G--~~v~~~~~v~D-----d~~~i~~~i~~~~~~-~D---lvittGG~g~g~~D~t~~ 78 (133)
T cd00758 20 NGPALEALLEDLG--CEVIYAGVVPD-----DADSIRAALIEASRE-AD---LVLTTGGTGVGRRDVTPE 78 (133)
T ss_pred hHHHHHHHHHHCC--CEEEEeeecCC-----CHHHHHHHHHHHHhc-CC---EEEECCCCCCCCCcchHH
Confidence 4556667788888 444433 2232 456677777766543 66 9999887663 355543
No 225
>PRK02399 hypothetical protein; Provisional
Probab=33.85 E-value=1.3e+02 Score=31.67 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=29.8
Q ss_pred cCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 174 SRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 174 ~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
.+++ .||++||+.=.+++-.+--...-|+|=+.|-|-.
T Consensus 94 g~i~---gviglGGs~GT~lat~aMr~LPiG~PKlmVSTmA 131 (406)
T PRK02399 94 GDVA---GVIGLGGSGGTALATPAMRALPIGVPKLMVSTMA 131 (406)
T ss_pred CCcc---EEEEecCcchHHHHHHHHHhCCCCCCeEEEEccc
Confidence 3466 9999999999998866644566789999997773
No 226
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=33.71 E-value=3e+02 Score=24.94 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=37.3
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhcCCCC-eeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPN-VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG 186 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~~gi~-~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG 186 (446)
.-|+.||..+.-.+ ...+...+.|.+.|+. ..+..+.+|+ .+|-=..+-..+...++| .||++|
T Consensus 12 ~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPG-----a~EiP~a~~~l~~~~~~D---avIalG 79 (154)
T PRK00061 12 GLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPG-----AFEIPLAAKKLAESGKYD---AVIALG 79 (154)
T ss_pred CCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCC-----HHHHHHHHHHHHHcCCCC---EEEEEe
Confidence 45888887764333 3566677788888741 2234444453 344333333333445566 999998
No 227
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.68 E-value=1.9e+02 Score=28.62 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=44.3
Q ss_pred EEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHHHH
Q 013271 117 KVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMC 194 (446)
Q Consensus 117 ~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D~a 194 (446)
++.++..+.-... +.+++.+.|++.|+ ++ . .. . .++| ++|.+|| |+++.++
T Consensus 4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~--~~--~-~~-----------------~--~~~D---~vi~lGGDGT~L~a~ 56 (264)
T PRK03501 4 NLFFFYKRDKELVEKVKPLKKIAEEYGF--TV--V-DH-----------------P--KNAN---IIVSIGGDGTFLQAV 56 (264)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCC--EE--E-cC-----------------C--CCcc---EEEEECCcHHHHHHH
Confidence 5677766544222 78888888988883 32 1 11 0 2356 9999995 8999888
Q ss_pred HHHHHhhcCCCeEEEEcC
Q 013271 195 GYAAASYLRGVSFIQIPT 212 (446)
Q Consensus 195 K~iAa~~~~g~p~i~IPT 212 (446)
...+ ....+|++-|.+
T Consensus 57 ~~~~--~~~~~pilgIn~ 72 (264)
T PRK03501 57 RKTG--FREDCLYAGIST 72 (264)
T ss_pred HHhc--ccCCCeEEeEec
Confidence 7652 223678888876
No 228
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=33.11 E-value=3.1e+02 Score=24.99 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=36.9
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhcCCCC-eeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPN-VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG 187 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~~gi~-~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG 187 (446)
+-|+.||..+.-.+ ...+-..+.|.+.|+. -+++.+.+|+ .+|.=..+-..++...+| .||++|-
T Consensus 10 ~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPG-----A~EiP~~a~~l~~~~~yD---aiIaLG~ 78 (158)
T PRK12419 10 PQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPG-----AFEIPLHAQTLAKTGRYA---AIVAAAL 78 (158)
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCc-----HHHHHHHHHHHHhcCCCC---EEEEEEE
Confidence 45888887764333 3556666788888842 1234455554 344333332333334466 9999983
No 229
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=32.99 E-value=31 Score=31.92 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=13.0
Q ss_pred eEEEEcCccHHHHHH
Q 013271 181 TFVALGGGVIGDMCG 195 (446)
Q Consensus 181 ~IIAiGGGsv~D~aK 195 (446)
.|||-|||++++=--
T Consensus 74 ~ViaTGGG~v~~~en 88 (172)
T COG0703 74 AVIATGGGAVLSEEN 88 (172)
T ss_pred eEEECCCccccCHHH
Confidence 899999999997553
No 230
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=32.99 E-value=1.1e+02 Score=30.02 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=24.8
Q ss_pred cceEEEEcCccHHHHH-HHHHHhhcCC---CeEEEEcCCcC
Q 013271 179 RCTFVALGGGVIGDMC-GYAAASYLRG---VSFIQIPTTVM 215 (446)
Q Consensus 179 ~~~IIAiGGGsv~D~a-K~iAa~~~~g---~p~i~IPTTl~ 215 (446)
+-.||+||.|++.+-+ -++. .+.+. -.++.|||...
T Consensus 42 ~g~ViGiGsGstv~~~v~~i~-q~l~~~~l~~vvgVPts~~ 81 (261)
T KOG3075|consen 42 NGMVIGIGSGSTVVYAVDRIG-QLLFDGDLGNVVGVPTSFR 81 (261)
T ss_pred CCeEEEecCccHHHHHHHHHH-HHhcCCCcCceEecccchh
Confidence 4589999999987655 3332 22322 56999999954
No 231
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=32.94 E-value=98 Score=30.86 Aligned_cols=71 Identities=27% Similarity=0.453 Sum_probs=49.5
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCCC-CCCCCCHH---------HHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHH
Q 013271 365 LGWIDDSIVKRVHNILQQAKLPTA-PPDTMTVE---------MFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRK 434 (446)
Q Consensus 365 ~g~~~~~~~~~i~~ll~~lGlP~~-~~~~i~~e---------~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~ 434 (446)
+||-.+...+|+.++++.+||+.. +.+..+.| -+.++|+.+.+ ++|+++|.|.. ..++++
T Consensus 103 ~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~-------ilLMDEPFgAL---DpI~R~ 172 (309)
T COG1125 103 LGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPP-------ILLMDEPFGAL---DPITRK 172 (309)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCC-------eEeecCCcccc---ChhhHH
Confidence 577666778999999999999752 32222211 14556666553 67888898776 678999
Q ss_pred HHHHHHHHHhh
Q 013271 435 ALDDTLYAFCK 445 (446)
Q Consensus 435 ~l~~~l~~~~~ 445 (446)
.|.+-+.+.++
T Consensus 173 ~lQ~e~~~lq~ 183 (309)
T COG1125 173 QLQEEIKELQK 183 (309)
T ss_pred HHHHHHHHHHH
Confidence 99888877765
No 232
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=32.83 E-value=3.6e+02 Score=26.30 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=47.0
Q ss_pred HhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc
Q 013271 108 LLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG 186 (446)
Q Consensus 108 ~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG 186 (446)
++.+. +.+|+.++.+...+.. ..+.+.+.+++.|..+ +....++. +.......+..+++.++| .|+..+
T Consensus 130 ~l~~~-g~~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~-----~~~d~~~~~~~l~~~~~d---av~~~~ 199 (336)
T cd06326 130 HLVTL-GLKRIAVFYQDDAFGKDGLAGVEKALAARGLKP-VATASYER-----NTADVAAAVAQLAAARPQ---AVIMVG 199 (336)
T ss_pred HHHHh-CCceEEEEEecCcchHHHHHHHHHHHHHcCCCe-EEEEeecC-----CcccHHHHHHHHHhcCCC---EEEEEc
Confidence 44444 4788888876554433 6677888888888532 12222332 123455566666667776 888877
Q ss_pred Cc-cHHHHHHHH
Q 013271 187 GG-VIGDMCGYA 197 (446)
Q Consensus 187 GG-sv~D~aK~i 197 (446)
.+ ....+.|.+
T Consensus 200 ~~~~a~~~i~~~ 211 (336)
T cd06326 200 AYKAAAAFIRAL 211 (336)
T ss_pred CcHHHHHHHHHH
Confidence 55 345555443
No 233
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=32.58 E-value=3.1e+02 Score=29.48 Aligned_cols=87 Identities=11% Similarity=0.208 Sum_probs=52.3
Q ss_pred hHhhhcCCCCEEEEE-ECCCchhHHHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVV-TNNTVAPLYLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliV-td~~v~~~~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
++++.+ +.+++.+| .|........+.+.+.+++.|+ .+.. ..++. ..+...+..++..+++.+++ +||.
T Consensus 180 ~l~~~f-~wk~VaiI~~dd~yG~~~~~~~~~~~~~~Gi--~I~~~~~i~~---~~~~~d~~~~l~klk~~~a~---vVvl 250 (510)
T cd06364 180 DIIEYF-RWNWVGTIAADDDYGRPGIEKFREEAEERDI--CIDFSELISQ---YSDEEEIQRVVEVIQNSTAK---VIVV 250 (510)
T ss_pred HHHHHc-CCeEEEEEEecCcchHHHHHHHHHHHHHCCc--EEEEEEEeCC---CCCHHHHHHHHHHHHhcCCe---EEEE
Confidence 344444 46786666 4444444578889999999985 3322 22332 12445677788788777777 8877
Q ss_pred EcCccHHHHHHHHHHhhcCC
Q 013271 185 LGGGVIGDMCGYAAASYLRG 204 (446)
Q Consensus 185 iGGGsv~D~aK~iAa~~~~g 204 (446)
.|.+ -|++.++-.+...+
T Consensus 251 ~~~~--~~~~~ll~qa~~~g 268 (510)
T cd06364 251 FSSG--PDLEPLIKEIVRRN 268 (510)
T ss_pred EeCc--HHHHHHHHHHHHhC
Confidence 6654 36666654444333
No 234
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=32.44 E-value=4.7e+02 Score=27.15 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=53.6
Q ss_pred CC-CEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE-EcCcc
Q 013271 114 QG-KKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA-LGGGV 189 (446)
Q Consensus 114 ~~-k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA-iGGGs 189 (446)
.+ +|+++|-..-++.. .-.-+++.+.+.|. ++- ...++=| -+++..+++.+++.+.| +|+. +.|-+
T Consensus 132 ~G~~r~~lvGSdYv~pre~Nri~r~~l~~~Gg--evvgE~Y~plg-----~td~~~ii~~I~~~~Pd---~V~stlvG~s 201 (363)
T PF13433_consen 132 FGAKRFYLVGSDYVYPRESNRIIRDLLEARGG--EVVGERYLPLG-----ATDFDPIIAEIKAAKPD---FVFSTLVGDS 201 (363)
T ss_dssp S--SEEEEEEESSHHHHHHHHHHHHHHHHTT---EEEEEEEE-S------HHHHHHHHHHHHHHT-S---EEEEE--TTC
T ss_pred cCCceEEEecCCccchHHHHHHHHHHHHHcCC--EEEEEEEecCC-----chhHHHHHHHHHhhCCC---EEEEeCcCCc
Confidence 46 99999988888888 45556667777774 331 1222322 27899999999999888 7764 67777
Q ss_pred HHHHHHHHHHh-hc-CCCeEEEEcCC
Q 013271 190 IGDMCGYAAAS-YL-RGVSFIQIPTT 213 (446)
Q Consensus 190 v~D~aK~iAa~-~~-~g~p~i~IPTT 213 (446)
....-+..+.. +. ..+|+.+.-|+
T Consensus 202 ~~aF~r~~~~aG~~~~~~Pi~S~~~~ 227 (363)
T PF13433_consen 202 NVAFYRAYAAAGLDPERIPIASLSTS 227 (363)
T ss_dssp HHHHHHHHHHHH-SSS---EEESS--
T ss_pred HHHHHHHHHHcCCCcccCeEEEEecC
Confidence 77777766543 22 24677766555
No 235
>PLN02929 NADH kinase
Probab=32.30 E-value=1e+02 Score=31.19 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHHHHHHHHHhhcCC
Q 013271 126 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRG 204 (446)
Q Consensus 126 v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D~aK~iAa~~~~g 204 (446)
+.+...+.+.+.|++.|+ ++.. +...+ + . + ...++| +||++|| |+++-++.++ ..+
T Consensus 31 ~h~~~~~~~~~~L~~~gi--~~~~--v~r~~----~---~---~--~~~~~D---lvi~lGGDGT~L~aa~~~----~~~ 87 (301)
T PLN02929 31 VHKDTVNFCKDILQQKSV--DWEC--VLRNE----L---S---Q--PIRDVD---LVVAVGGDGTLLQASHFL----DDS 87 (301)
T ss_pred hhHHHHHHHHHHHHHcCC--EEEE--eeccc----c---c---c--ccCCCC---EEEEECCcHHHHHHHHHc----CCC
Confidence 455578889999999994 4421 11111 0 0 0 113456 9999998 7777766553 567
Q ss_pred CeEEEEcCC
Q 013271 205 VSFIQIPTT 213 (446)
Q Consensus 205 ~p~i~IPTT 213 (446)
+|++-|-+-
T Consensus 88 iPvlGIN~G 96 (301)
T PLN02929 88 IPVLGVNSD 96 (301)
T ss_pred CcEEEEECC
Confidence 899988764
No 236
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.15 E-value=3.7e+02 Score=25.24 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=46.7
Q ss_pred chhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCC
Q 013271 126 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 126 v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~ 205 (446)
.+..+.+.+.+.+++.| +.+. +... + .+.+...+.++.+.+.++| .||..++... ...+.......++
T Consensus 13 ~~~~~~~~i~~~a~~~g--~~~~--~~~~-~--~~~~~~~~~i~~l~~~~vd---gii~~~~~~~--~~~~~~~~~~~~i 80 (269)
T cd06281 13 LLAQLFSGAEDRLRAAG--YSLL--IANS-L--NDPERELEILRSFEQRRMD---GIIIAPGDER--DPELVDALASLDL 80 (269)
T ss_pred cHHHHHHHHHHHHHHcC--CEEE--EEeC-C--CChHHHHHHHHHHHHcCCC---EEEEecCCCC--cHHHHHHHHhCCC
Confidence 34446778888888888 4442 2222 1 2345666777778888899 8888876422 1222222234689
Q ss_pred eEEEEcCC
Q 013271 206 SFIQIPTT 213 (446)
Q Consensus 206 p~i~IPTT 213 (446)
|+|.+-..
T Consensus 81 pvV~i~~~ 88 (269)
T cd06281 81 PIVLLDRD 88 (269)
T ss_pred CEEEEecc
Confidence 99999654
No 237
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=31.92 E-value=1.6e+02 Score=26.59 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHH-cCCCCcceEEEEcCccHHH
Q 013271 130 YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 130 ~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~-~~~dr~~~IIAiGGGsv~D 192 (446)
-...+...|++.|. ++.. .++++ +.+.+.+.++.+.+ .++| +||--||=++.+
T Consensus 23 n~~~l~~~L~~~G~--~v~~~~iv~D-----d~~~i~~~l~~~~~~~~~D---lVIttGGtg~g~ 77 (163)
T TIGR02667 23 SGQYLVERLTEAGH--RLADRAIVKD-----DIYQIRAQVSAWIADPDVQ---VILITGGTGFTG 77 (163)
T ss_pred cHHHHHHHHHHCCC--eEEEEEEcCC-----CHHHHHHHHHHHHhcCCCC---EEEECCCcCCCC
Confidence 35566777888884 4432 23332 45667777766543 5677 999888866653
No 238
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=31.86 E-value=1.7e+02 Score=26.43 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=48.6
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCC-CCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge-~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
|+.|=+|..-.+ +.+.+.+.|++.| ++|..+--.+.+ +..-.+...++.+.+.+..+|| .|+--|.|.-+-++
T Consensus 2 kI~igsDhaG~~-lK~~l~~~L~~~g--~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~--GIliCGtGiG~sia- 75 (148)
T PRK05571 2 KIAIGSDHAGFE-LKEEIIEHLEELG--HEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADR--GILICGTGIGMSIA- 75 (148)
T ss_pred EEEEEeCCchHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCE--EEEEcCCcHHHHHH-
Confidence 466667775444 5788999999998 555433222222 2222356667777777777776 55555555544433
Q ss_pred HHHHhhcCCCeEEEE
Q 013271 196 YAAASYLRGVSFIQI 210 (446)
Q Consensus 196 ~iAa~~~~g~p~i~I 210 (446)
+--.+|+....+
T Consensus 76 ---ANK~~GIRAA~~ 87 (148)
T PRK05571 76 ---ANKVKGIRAALC 87 (148)
T ss_pred ---HhcCCCeEEEEE
Confidence 122356655444
No 239
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=31.85 E-value=3.4e+02 Score=27.73 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=50.6
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcC-CCCeeEEEEEeCCCCCCCc-----HHHHHHHHHHHHHcCCCCcceEEEEc-C
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRG-NPNVSVENVILPDGENYKN-----MDTLMKVFDKAIESRLDRRCTFVALG-G 187 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~-gi~~~v~~~i~~~ge~~~t-----~~~v~~~~~~~~~~~~dr~~~IIAiG-G 187 (446)
..-.+|+|++...+.++..+....... ++...+. ..+.. ..+.+ -..+.++.+.+.++++| +++..| +
T Consensus 29 ~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Pd---~vlv~GD~ 103 (365)
T TIGR03568 29 LELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIE-ILLDS-DSNAGMAKSMGLTIIGFSDAFERLKPD---LVVVLGDR 103 (365)
T ss_pred CcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccc-cccCC-CCCCCHHHHHHHHHHHHHHHHHHhCCC---EEEEeCCc
Confidence 467889999987655432233222221 1111111 11221 11112 23456677777888888 999999 5
Q ss_pred ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 188 GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 188 Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
.+++..| +| ++..++|++.|==.
T Consensus 104 ~~~la~a--la-A~~~~IPv~HveaG 126 (365)
T TIGR03568 104 FEMLAAA--IA-AALLNIPIAHIHGG 126 (365)
T ss_pred hHHHHHH--HH-HHHhCCcEEEEECC
Confidence 5666555 33 35688999877433
No 240
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=31.40 E-value=95 Score=26.82 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=47.6
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHH----HHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTL----MKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v----~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
+|+.|+.-++....-...+.+.|..++ +++..+- +++.+-.+...+ +.-++......+| .+|-.||....
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~--~~v~vvs-~~~~~v~s~~g~~i~~~~~l~~~~~~~~D---~liVpGg~~~~ 75 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAG--ANVKVVA-PTLGGVVDSDGKTLEVDQTYAGAPSVLFD---AVVVPGGAEAA 75 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCC--CEEEEEe-cCcCceecCCCcEEecceeecCCChhhcC---EEEECCCccCH
Confidence 456665555555444445666777777 4554333 333321111110 1011111111234 77777874322
Q ss_pred -------HHHHHHHHhhcCCCeEEEEcCC
Q 013271 192 -------DMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 192 -------D~aK~iAa~~~~g~p~i~IPTT 213 (446)
++..++...+.++.++.+|.|.
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~I~aic~G 104 (142)
T cd03132 76 FALAPSGRALHFVTEAFKHGKPIGAVGEG 104 (142)
T ss_pred HHHccChHHHHHHHHHHhcCCeEEEcCch
Confidence 2556666677889999999877
No 241
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=31.35 E-value=5.2e+02 Score=25.52 Aligned_cols=111 Identities=9% Similarity=0.091 Sum_probs=54.6
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCc---HHHHHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN---MDTLMKVF 168 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t---~~~v~~~~ 168 (446)
+..|+..++.-.. .+.++. .+.++.++.+..-.+...+...+..++.+ .....-+.+ ..|+- -....+++
T Consensus 84 ~~~i~~p~~~~~~k~~~~~~--~GA~v~~v~~~~~~~~~~~~a~~l~~~~~---~~~~~~~~~-~~~~~~~~~t~~~Ei~ 157 (290)
T TIGR01138 84 RMKLLMPDNMSQERKAAMRA--YGAELILVTKEEGMEGARDLALELANRGE---GKLLDQFNN-PDNPYAHYTSTGPEIW 157 (290)
T ss_pred eEEEEECCCCCHHHHHHHHH--cCCEEEEeCCCCChHHHHHHHHHHHHhCC---CCCCCccCC-cccHHHHhHhHHHHHH
Confidence 4566666665444 556665 46777776543222223344444444433 111111111 11221 11333444
Q ss_pred HHHHHcCCCCcceEEEEcCccHH-HHHHHHHHhhcCCCeEEEEcCC
Q 013271 169 DKAIESRLDRRCTFVALGGGVIG-DMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 169 ~~~~~~~~dr~~~IIAiGGGsv~-D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+++. ..+ +.+|+++|||..+ =+++++.. +...+++|.|-+.
T Consensus 158 ~q~~-~~~--d~iv~~vG~Gg~~~Gv~~~lk~-~~~~~kvi~Vep~ 199 (290)
T TIGR01138 158 QQTG-GRI--THFVSSMGTTGTIMGVSRFLKE-QNPPVQIVGLQPE 199 (290)
T ss_pred HHcC-CCC--CEEEECCCchHHHHHHHHHHHH-hCCCCEEEEEeCC
Confidence 4331 113 3477788887776 56666643 3567899988654
No 242
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=30.59 E-value=3.8e+02 Score=24.96 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCe
Q 013271 127 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 206 (446)
Q Consensus 127 ~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p 206 (446)
+..+.+.+.+.+++.| +.+... .. . -+.+...+.++.+.+.++| .||-.+....-++.+.+ -..++|
T Consensus 14 ~~~~~~~~~~~~~~~g--~~~~~~--~~-~--~~~~~~~~~i~~l~~~~vd---giii~~~~~~~~~~~~l---~~~~ip 80 (268)
T cd06298 14 FAELARGIDDIATMYK--YNIILS--NS-D--NDKEKELKVLNNLLAKQVD---GIIFMGGKISEEHREEF---KRSPTP 80 (268)
T ss_pred HHHHHHHHHHHHHHcC--CeEEEE--eC-C--CCHHHHHHHHHHHHHhcCC---EEEEeCCCCcHHHHHHH---hcCCCC
Confidence 3336677888888888 444322 21 1 1335556666667778888 88888765444554443 246899
Q ss_pred EEEEcCC
Q 013271 207 FIQIPTT 213 (446)
Q Consensus 207 ~i~IPTT 213 (446)
+|.+-+.
T Consensus 81 vV~~~~~ 87 (268)
T cd06298 81 VVLAGSV 87 (268)
T ss_pred EEEEccc
Confidence 9999664
No 243
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=30.40 E-value=6.2e+02 Score=26.02 Aligned_cols=53 Identities=11% Similarity=-0.005 Sum_probs=28.9
Q ss_pred hhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 013271 330 HTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT 387 (446)
Q Consensus 330 Hti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~ 387 (446)
.+++|+|++. . .-.++..-+.+..+.+--..++. .+...+++.++.+.+|++.
T Consensus 256 ~g~~Hal~~~--l-~~~~~i~HG~~~ai~lp~vl~~~--~~~~~~~~~~la~~~g~~~ 308 (377)
T cd08188 256 LGAVHAMAHS--L-GGLLDLPHGECNAILLPHVMEFN--YPAAPERYARIAEALGLDV 308 (377)
T ss_pred HHHHHHHhhh--h-hhCcCCChHHHHHHHHHHHHHhh--hhcCHHHHHHHHHHhCCCC
Confidence 4577777765 2 33455544444443333333333 2334567777888888764
No 244
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=30.31 E-value=3.2e+02 Score=22.77 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=42.4
Q ss_pred EEEEEECCCchhHHHHHHHHHHhc-CCCCeeEEEEEeCCCCCCCcHHHH-HHHHHHHHHcCCCCcceEEE--EcCccHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTL-MKVFDKAIESRLDRRCTFVA--LGGGVIGD 192 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~-~gi~~~v~~~i~~~ge~~~t~~~v-~~~~~~~~~~~~dr~~~IIA--iGGGsv~D 192 (446)
+++|++-....+-+.+-+...+.+ .. .+..+-+..+ .+.++. +++.+.+.+.+- .+.+||= ++||++.-
T Consensus 1 giii~sHG~~A~g~~~~~~~i~G~~~~---~i~~~~~~~~---~~~~~~~~~l~~~i~~~~~-~~~vlil~Dl~ggsp~n 73 (116)
T PF03610_consen 1 GIIIASHGSLAEGLLESAEMILGEDQD---NIEAVDLYPD---ESIEDFEEKLEEAIEELDE-GDGVLILTDLGGGSPFN 73 (116)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHTSTCS---SEEEEEETTT---SCHHHHHHHHHHHHHHCCT-TSEEEEEESSTTSHHHH
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCcc---cEEEEECcCC---CCHHHHHHHHHHHHHhccC-CCcEEEEeeCCCCccch
Confidence 367777777777777777777766 32 3444545433 355544 444445434321 2233333 79999998
Q ss_pred HHHH
Q 013271 193 MCGY 196 (446)
Q Consensus 193 ~aK~ 196 (446)
.+-.
T Consensus 74 ~a~~ 77 (116)
T PF03610_consen 74 EAAR 77 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8743
No 245
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=30.25 E-value=5e+02 Score=24.94 Aligned_cols=74 Identities=8% Similarity=0.025 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEE
Q 013271 129 LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFI 208 (446)
Q Consensus 129 ~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i 208 (446)
...+.+.+.+++.| +.+ .++... . +.+...+.++.+...++| .||- ++...-++...+......++|+|
T Consensus 43 ~~~~~i~~~~~~~G--~~~--~~~~~~-~--d~~~~~~~~~~l~~~~~d---giii-~~~~~~~~~~~l~~~~~~~ipvV 111 (295)
T PRK10653 43 SLKDGAQKEADKLG--YNL--VVLDSQ-N--NPAKELANVQDLTVRGTK---ILLI-NPTDSDAVGNAVKMANQANIPVI 111 (295)
T ss_pred HHHHHHHHHHHHcC--CeE--EEecCC-C--CHHHHHHHHHHHHHcCCC---EEEE-cCCChHHHHHHHHHHHHCCCCEE
Confidence 35677778888888 343 233322 1 335556677777778888 7775 44332222223333335789999
Q ss_pred EEcCC
Q 013271 209 QIPTT 213 (446)
Q Consensus 209 ~IPTT 213 (446)
.+-..
T Consensus 112 ~~~~~ 116 (295)
T PRK10653 112 TLDRG 116 (295)
T ss_pred EEccC
Confidence 99643
No 246
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=29.67 E-value=1.2e+02 Score=26.86 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHc-CCCCcceEEEEcCccHHH
Q 013271 130 YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 130 ~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~-~~dr~~~IIAiGGGsv~D 192 (446)
...-+.+.|++.|. ++.. .++++ +.+.+.+.++.+.+. ++| +||..||-++.+
T Consensus 21 n~~~l~~~l~~~G~--~v~~~~~v~D-----d~~~i~~~l~~~~~~~~~D---lVittGG~s~g~ 75 (152)
T cd00886 21 SGPALVELLEEAGH--EVVAYEIVPD-----DKDEIREALIEWADEDGVD---LILTTGGTGLAP 75 (152)
T ss_pred hHHHHHHHHHHcCC--eeeeEEEcCC-----CHHHHHHHHHHHHhcCCCC---EEEECCCcCCCC
Confidence 44557777888884 4332 23332 446666666655432 455 999998877654
No 247
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=29.40 E-value=1.1e+02 Score=25.12 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=24.8
Q ss_pred CEEEEEECCCchhH--HHHHHHHHHhcCCCCe
Q 013271 116 KKVLVVTNNTVAPL--YLDKVTDALTRGNPNV 145 (446)
Q Consensus 116 k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~ 145 (446)
+|+++|++.++.-. ...++++.+++.|+++
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~ 34 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPV 34 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeE
Confidence 47999999998665 4799999999999643
No 248
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=29.40 E-value=4.3e+02 Score=27.04 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=48.4
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeE-EEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSV-ENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v-~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
+++.+. .++|+.+|++...+.. ..+.+.+.+++.|. ++ ....++. ........+.++++.++| +|+.
T Consensus 126 ~~~~~~-~g~~va~l~~d~~~g~~~~~~~~~~~~~~G~--~vv~~~~~~~-----g~~Df~~~l~~i~~~~pD---~V~~ 194 (374)
T TIGR03669 126 PYMVEE-YGKKIYTIAADYNFGQLSADWVRVIAKENGA--EVVGEEFIPL-----SVSQFSSTIQNIQKADPD---FVMS 194 (374)
T ss_pred HHHHHc-CCCeEEEEcCCcHHHHHHHHHHHHHHHHcCC--eEEeEEecCC-----CcchHHHHHHHHHHcCCC---EEEE
Confidence 344433 4678888888766655 56677788888884 33 2222332 235566777788888998 8876
Q ss_pred Ec-CccHHHHHHH
Q 013271 185 LG-GGVIGDMCGY 196 (446)
Q Consensus 185 iG-GGsv~D~aK~ 196 (446)
.+ |+....+.|-
T Consensus 195 ~~~g~~~~~~~kq 207 (374)
T TIGR03669 195 MLVGANHASFYEQ 207 (374)
T ss_pred cCcCCcHHHHHHH
Confidence 55 3333344443
No 249
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=29.27 E-value=3.9e+02 Score=24.84 Aligned_cols=75 Identities=11% Similarity=0.028 Sum_probs=46.1
Q ss_pred chhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH-HHHHHHHHhhcCC
Q 013271 126 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG-DMCGYAAASYLRG 204 (446)
Q Consensus 126 v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~-D~aK~iAa~~~~g 204 (446)
.+..+.+.+.+.+++.| +.+.+. ...+. +.+...+.++.+.+.++| .||-.+..... ++.++ ...+
T Consensus 13 ~~~~~~~gi~~~~~~~~--~~~~~~--~~~~~--~~~~~~~~~~~l~~~~vd---giii~~~~~~~~~~~~~----~~~~ 79 (264)
T cd01574 13 GPSSTLAAIESAAREAG--YAVTLS--MLAEA--DEEALRAAVRRLLAQRVD---GVIVNAPLDDADAALAA----APAD 79 (264)
T ss_pred cHHHHHHHHHHHHHHCC--CeEEEE--eCCCC--chHHHHHHHHHHHhcCCC---EEEEeCCCCChHHHHHH----HhcC
Confidence 34447788888888888 444322 22111 225566677777888888 88877654332 22222 2468
Q ss_pred CeEEEEcCC
Q 013271 205 VSFIQIPTT 213 (446)
Q Consensus 205 ~p~i~IPTT 213 (446)
+|+|.+=+.
T Consensus 80 ipvv~~~~~ 88 (264)
T cd01574 80 VPVVFVDGS 88 (264)
T ss_pred CCEEEEecc
Confidence 999999765
No 250
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=28.75 E-value=1.4e+02 Score=20.06 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHH
Q 013271 374 KRVHNILQQAKLPTAPPDTMTVEMFKSIMA 403 (446)
Q Consensus 374 ~~i~~ll~~lGlP~~~~~~i~~e~~~~~l~ 403 (446)
+.+.++|++.|++..... .+.+++++.++
T Consensus 7 ~~L~~wL~~~gi~~~~~~-~~rd~Ll~~~k 35 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-KTRDELLKLAK 35 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-CCHHHHHHHHH
Confidence 578899999999986543 47888776554
No 251
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.67 E-value=1.2e+02 Score=29.57 Aligned_cols=68 Identities=9% Similarity=0.083 Sum_probs=39.1
Q ss_pred EEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH-HHHH
Q 013271 118 VLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGY 196 (446)
Q Consensus 118 vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D-~aK~ 196 (446)
+.|+..+. .....+++.+.|.+.|+ .+.+. ++.+ . ...++| +||++||=-.+- ++..
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~l~~~~~--~~~~~--~~~~------------~--~~~~~d---~vi~iGGDGT~L~a~~~ 60 (256)
T PRK14075 3 LGIFYREE-KEKEAKFLKEKISKEHE--VVEFC--EASA------------S--GKVTAD---LIIVVGGDGTVLKAAKK 60 (256)
T ss_pred EEEEeCcc-HHHHHHHHHHHHHHcCC--eeEee--cccc------------c--ccCCCC---EEEEECCcHHHHHHHHH
Confidence 44444444 44578888888888873 33211 1111 0 123556 999999955544 3332
Q ss_pred HHHhhcCCCeEEEEcCC
Q 013271 197 AAASYLRGVSFIQIPTT 213 (446)
Q Consensus 197 iAa~~~~g~p~i~IPTT 213 (446)
+ ++|++.|.+.
T Consensus 61 ----~--~~Pilgin~G 71 (256)
T PRK14075 61 ----V--GTPLVGFKAG 71 (256)
T ss_pred ----c--CCCEEEEeCC
Confidence 2 8888888754
No 252
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=28.52 E-value=2.1e+02 Score=26.50 Aligned_cols=87 Identities=17% Similarity=0.051 Sum_probs=50.9
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
|+.|=+|..-.+ +.+.|.++|++.| ++|..+--.+.++..-.+...++.+.+.+..++| .|+--|-|.-+-++
T Consensus 2 kI~igsDhaG~~-lK~~l~~~L~~~G--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~--GIliCGTGiG~sia-- 74 (171)
T TIGR01119 2 KIAIGCDHIVTD-VKMEVSEFLKSKG--YEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADL--GVCICGTGVGINNA-- 74 (171)
T ss_pred EEEEEeCCchHH-HHHHHHHHHHHCC--CEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCE--EEEEcCCcHHHHHH--
Confidence 466667765444 5788999999999 5654433222233222355666777776666775 55555666544443
Q ss_pred HHHhhcCCCeEEEEcC
Q 013271 197 AAASYLRGVSFIQIPT 212 (446)
Q Consensus 197 iAa~~~~g~p~i~IPT 212 (446)
+--.+|+....+-.
T Consensus 75 --ANKv~GIRAAl~~d 88 (171)
T TIGR01119 75 --VNKVPGVRSALVRD 88 (171)
T ss_pred --HhcCCCeEEEEeCC
Confidence 22235666655533
No 253
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=28.39 E-value=1.3e+02 Score=27.58 Aligned_cols=95 Identities=14% Similarity=0.043 Sum_probs=48.9
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCC--CCCCcHHH----HHHHHHHHHHcCCCCcceEEEEcCc
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDG--ENYKNMDT----LMKVFDKAIESRLDRRCTFVALGGG 188 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~g--e~~~t~~~----v~~~~~~~~~~~~dr~~~IIAiGGG 188 (446)
.||++|+..++..+.=.-...+.|.++| +++.......+ ++-.+... .+.-++.......| .|+-.||.
T Consensus 2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag--~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D---~l~ipGG~ 76 (196)
T PRK11574 2 SASALVCLAPGSEETEAVTTIDLLVRGG--IKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFD---VIVLPGGI 76 (196)
T ss_pred CceEEEEeCCCcchhhHhHHHHHHHHCC--CeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCC---EEEECCCC
Confidence 3678888888887762223344566666 34443332211 11000000 00011111112344 77777773
Q ss_pred -cHH------HHHHHHHHhhcCCCeEEEEcCCc
Q 013271 189 -VIG------DMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 189 -sv~------D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
..- .+.+++...+.++.++.+|.|..
T Consensus 77 ~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~ 109 (196)
T PRK11574 77 KGAECFRDSPLLVETVRQFHRSGRIVAAICAAP 109 (196)
T ss_pred chhhhhhhCHHHHHHHHHHHHCCCEEEEECHhH
Confidence 222 25666666678999999999884
No 254
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=28.17 E-value=2.2e+02 Score=25.69 Aligned_cols=88 Identities=16% Similarity=0.216 Sum_probs=51.3
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhc--CCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTR--GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 193 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~--~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~ 193 (446)
.|+.|=+|..-++ +.+.+.++|++ .| ++|..+--.+.++..-.+...++.+.+.+..++| .|+--|.|.-+-+
T Consensus 3 mkI~igsDhaG~~-lK~~l~~~L~~~~~g--~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~--GIliCGtGiG~si 77 (151)
T PTZ00215 3 KKVAIGSDHAGFD-LKNEIIDYIKNKGKE--YKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADT--GILVCGSGIGISI 77 (151)
T ss_pred cEEEEEeCCchHH-HHHHHHHHHHhccCC--CEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcE--EEEEcCCcHHHHH
Confidence 3577778876554 57889999999 88 5554332222233222355667777777766776 5555555554443
Q ss_pred HHHHHHhhcCCCeEEEEcC
Q 013271 194 CGYAAASYLRGVSFIQIPT 212 (446)
Q Consensus 194 aK~iAa~~~~g~p~i~IPT 212 (446)
+ +--.+|+....+-.
T Consensus 78 a----ANK~~GIRAa~~~d 92 (151)
T PTZ00215 78 A----ANKVKGIRCALCHD 92 (151)
T ss_pred H----HhcCCCeEEEEECC
Confidence 3 22235666655543
No 255
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=27.91 E-value=6.3e+02 Score=25.35 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCCCcceEEEEcCccHHH-HHHHHHHhhcCCCeEEEEcCC
Q 013271 163 TLMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 163 ~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D-~aK~iAa~~~~g~p~i~IPTT 213 (446)
...++++++...+.+-+.+|+++|||..+= +++++. .+...+++|.|...
T Consensus 169 ~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k-~~~~~~~vigVe~~ 219 (331)
T PRK03910 169 CALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLA-ALGPDIPVIGVTVS 219 (331)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHH-HhCCCCeEEEEEec
Confidence 345666666543322346899999887653 444442 23456777776554
No 256
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=27.79 E-value=2.3e+02 Score=30.01 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=26.4
Q ss_pred ceEEEEcCccHHHHHHH-----HHHhhcCCCeEEEEcCCcC
Q 013271 180 CTFVALGGGVIGDMCGY-----AAASYLRGVSFIQIPTTVM 215 (446)
Q Consensus 180 ~~IIAiGGGsv~D~aK~-----iAa~~~~g~p~i~IPTTl~ 215 (446)
|++|..|||.-.|.-+. +..+...|.|++.++=+++
T Consensus 119 DlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiG 159 (426)
T PRK10017 119 DAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVG 159 (426)
T ss_pred CEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCC
Confidence 39999999999996442 2223467899999987754
No 257
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=27.11 E-value=1.1e+02 Score=30.01 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=23.3
Q ss_pred ceEEEEcC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 180 CTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 180 ~~IIAiGG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
|+||.||| |+++-++... ...++|++-|.+.
T Consensus 27 Dlvi~iGGDGTlL~a~~~~---~~~~~PvlGIN~G 58 (246)
T PRK04761 27 DVIVALGGDGFMLQTLHRY---MNSGKPVYGMNRG 58 (246)
T ss_pred CEEEEECCCHHHHHHHHHh---cCCCCeEEEEeCC
Confidence 49999998 7777777653 2467999888764
No 258
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=27.10 E-value=99 Score=27.15 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=34.2
Q ss_pred CceeEEEccCcC-CC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhc
Q 013271 92 RSYPIYIGSGLL-DH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTR 140 (446)
Q Consensus 92 ~~~~I~~G~g~~-~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~ 140 (446)
.+.-+..|++.. .+ -+.++.....+.|+|+||+....- +.+++.++|..
T Consensus 30 ~~~i~~~g~~i~~~~~ie~i~~~~~~k~VIILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 30 AGVIITNGSAINSLETIELIKKAQKYKGVIILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred CceEEEcCCccchHHHHHHHHHhhccCCEEEEeCCCcchHHHHHHHHHHhcc
Confidence 345556777766 44 667766434678999999987544 77788888876
No 259
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=26.98 E-value=3.9e+02 Score=25.86 Aligned_cols=95 Identities=19% Similarity=0.230 Sum_probs=58.6
Q ss_pred EEccCcCCC-hhHhhhc-CCCCEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 97 YIGSGLLDH-PDLLQKH-VQGKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 97 ~~G~g~~~~-~~~l~~~-~~~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
+.|.+-+.. .+.+.++ ...+|+++|--... ++.|.++..+.+.+.|+ ++.. +... ++ ..+.+
T Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~--~v~~--l~~~------~d---~~~~l 77 (233)
T PRK05282 11 LPGTGYLEHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGI--EVTG--IHRV------AD---PVAAI 77 (233)
T ss_pred CCCCchHHHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCC--EEEE--eccc------hh---hHHHH
Confidence 456666666 6666654 23678888865542 34488999999999984 4432 3211 11 12333
Q ss_pred HHcCCCCcceEEEEcCccHHHHHHHHHH---------hhcCCCeEEEE
Q 013271 172 IESRLDRRCTFVALGGGVIGDMCGYAAA---------SYLRGVSFIQI 210 (446)
Q Consensus 172 ~~~~~dr~~~IIAiGGGsv~D~aK~iAa---------~~~~g~p~i~I 210 (446)
..+| +|-||||...-+.+.... .+.+|.|++-.
T Consensus 78 --~~ad----~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~ 119 (233)
T PRK05282 78 --ENAE----AIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGW 119 (233)
T ss_pred --hcCC----EEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEE
Confidence 3456 888999988888876532 24578776543
No 260
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=26.91 E-value=1e+02 Score=34.42 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh-------cCCCeEEEEcCCcC
Q 013271 158 YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-------LRGVSFIQIPTTVM 215 (446)
Q Consensus 158 ~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~-------~~g~p~i~IPTTl~ 215 (446)
-.|++..-++.+.+.++|....+-|+++||..=+=+.++++..- --.+|||-|=||++
T Consensus 505 ~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMl 569 (682)
T COG1770 505 KNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTML 569 (682)
T ss_pred cccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhc
Confidence 46899999999999999999999999999877777777776431 23589999888854
No 261
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.71 E-value=1.7e+02 Score=27.39 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCe
Q 013271 127 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 206 (446)
Q Consensus 127 ~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p 206 (446)
+..+.+-+.+..++.|. ++.++ .+ . ..+.+.-.+.++.+...++| .||-...-. -.+...+.-....|+|
T Consensus 13 ~~~~~~g~~~~a~~~g~--~~~~~-~~-~--~~d~~~q~~~i~~~i~~~~d---~Iiv~~~~~-~~~~~~l~~~~~~gIp 82 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGY--EVEIV-FD-A--QNDPEEQIEQIEQAISQGVD---GIIVSPVDP-DSLAPFLEKAKAAGIP 82 (257)
T ss_dssp HHHHHHHHHHHHHHHTC--EEEEE-EE-S--TTTHHHHHHHHHHHHHTTES---EEEEESSST-TTTHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCC--EEEEe-CC-C--CCCHHHHHHHHHHHHHhcCC---EEEecCCCH-HHHHHHHHHHhhcCce
Confidence 33466777788888873 43322 22 2 33557777888888889998 777443322 2222333223457999
Q ss_pred EEEEcCC
Q 013271 207 FIQIPTT 213 (446)
Q Consensus 207 ~i~IPTT 213 (446)
+|.+=+.
T Consensus 83 vv~~d~~ 89 (257)
T PF13407_consen 83 VVTVDSD 89 (257)
T ss_dssp EEEESST
T ss_pred EEEEecc
Confidence 9998554
No 262
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=26.59 E-value=49 Score=29.46 Aligned_cols=62 Identities=6% Similarity=0.160 Sum_probs=33.3
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
+..++=+|..+.+.++..+.+.+.+.|- + .|. +.-.++++.+...+ .+||+.|||++++-.-
T Consensus 17 ~~~fiD~D~~i~~~~g~si~~i~~~~G~--~----~fr--------~~E~~~l~~l~~~~----~~VIa~GGG~~~~~~~ 78 (158)
T PF01202_consen 17 GRPFIDLDDEIEERTGMSISEIFAEEGE--E----AFR--------ELESEALRELLKEN----NCVIACGGGIVLKEEN 78 (158)
T ss_dssp TSEEEEHHHHHHHHHTSHHHHHHHHHHH--H----HHH--------HHHHHHHHHHHCSS----SEEEEE-TTGGGSHHH
T ss_pred CCCccccCHHHHHHhCCcHHHHHHcCCh--H----HHH--------HHHHHHHHHHhccC----cEEEeCCCCCcCcHHH
Confidence 3455556665555566666666655441 0 011 11223334444333 3999999999988663
No 263
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=26.36 E-value=2e+02 Score=25.36 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=23.8
Q ss_pred ceEEEEcCccHH------HHHHHHHHhhcCCCeEEEEcCCc
Q 013271 180 CTFVALGGGVIG------DMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 180 ~~IIAiGGGsv~------D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
|.|+-.||...- ++..++...+.++.++..|.+..
T Consensus 62 D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~ 102 (166)
T TIGR01382 62 DALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGP 102 (166)
T ss_pred cEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHH
Confidence 388877874332 24455555577899999998874
No 264
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=26.18 E-value=4.5e+02 Score=26.57 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEEcCc-cHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 162 DTLMKVFDKAIESRLDRRCTFVALGGG-VIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 162 ~~v~~~~~~~~~~~~dr~~~IIAiGGG-sv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+.+.+....+...-.. ++-+||||+| ++..+++.+... .+..++-.||..
T Consensus 99 ~~vg~~aA~~L~~~l~-~~~~IGvswG~Tl~~~~~~l~~~-~~~~~~~vV~l~ 149 (318)
T PRK15418 99 GRLGIGAAHMLMSLLQ-PQQLLAVGFGEATMNTLQHLSGF-ISSQQIRLVTLS 149 (318)
T ss_pred HHHHHHHHHHHHHhcC-CCCEEEEcchHHHHHHHHhcccc-CCCCCCEEEEcC
Confidence 4444444444433332 2358999999 555676655211 233456666766
No 265
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=26.12 E-value=4.9e+02 Score=24.26 Aligned_cols=75 Identities=8% Similarity=0.063 Sum_probs=46.4
Q ss_pred chhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCC
Q 013271 126 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 126 v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~ 205 (446)
.+..+.+.+.+.+++.| +.+.. +.. . .+.+...+.++.+...++| .||..+.-.--+. +......++
T Consensus 13 ~~~~~~~~~~~~~~~~g--~~~~~--~~~-~--~~~~~~~~~i~~l~~~~vd---giii~~~~~~~~~---~~~~~~~~i 79 (264)
T cd06274 13 SFARIAKRLEALARERG--YQLLI--ACS-D--DDPETERETVETLIARQVD---ALIVAGSLPPDDP---YYLCQKAGL 79 (264)
T ss_pred hHHHHHHHHHHHHHHCC--CEEEE--EeC-C--CCHHHHHHHHHHHHHcCCC---EEEEcCCCCchHH---HHHHHhcCC
Confidence 34446677778888888 44432 221 1 1335566788888889998 8888775432222 222334689
Q ss_pred eEEEEcCC
Q 013271 206 SFIQIPTT 213 (446)
Q Consensus 206 p~i~IPTT 213 (446)
|+|.+=..
T Consensus 80 pvV~~~~~ 87 (264)
T cd06274 80 PVVALDRP 87 (264)
T ss_pred CEEEecCc
Confidence 99999554
No 266
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=26.04 E-value=2e+02 Score=26.96 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCC-eeEEEEEeCCCCCCCcHHHHHHHHHHHHH-cCCCCcceEEEEcCccHH
Q 013271 130 YLDKVTDALTRGNPN-VSVENVILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 130 ~~~~v~~~L~~~gi~-~~v~~~i~~~ge~~~t~~~v~~~~~~~~~-~~~dr~~~IIAiGGGsv~ 191 (446)
-...+.+.|++.|.+ +.+...++++ +.+.+.+.++.+.+ .++| +||--||=++.
T Consensus 24 ng~~L~~~L~~~G~~g~~v~~~iVpD-----d~~~I~~aL~~a~~~~~~D---lIITTGGtg~g 79 (193)
T PRK09417 24 GIPALEEWLASALTSPFEIETRLIPD-----EQDLIEQTLIELVDEMGCD---LVLTTGGTGPA 79 (193)
T ss_pred hHHHHHHHHHHcCCCCceEEEEECCC-----CHHHHHHHHHHHhhcCCCC---EEEECCCCCCC
Confidence 456667777777521 1233334443 44667777766654 4677 88888776554
No 267
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=25.98 E-value=6.3e+02 Score=25.33 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=47.7
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
+++.+. .++|+.+|.....+.. ..+.+.+.+++.|+ ++...... ...++..++...+.++++.++| +|+..
T Consensus 125 ~~~~~~-~~~~v~~i~~d~~~g~~~~~~~~~~~~~~G~--~vv~~~~~--~~~~~~~d~s~~v~~l~~~~pd---~V~~~ 196 (360)
T cd06357 125 DYLLRH-YGKRVFLVGSNYIYPYESNRIMRDLLEQRGG--EVLGERYL--PLGASDEDFARIVEEIREAQPD---FIFST 196 (360)
T ss_pred HHHHhc-CCcEEEEECCCCcchHHHHHHHHHHHHHcCC--EEEEEEEe--cCCCchhhHHHHHHHHHHcCCC---EEEEe
Confidence 344443 4677887766555443 66778888888884 33221111 1123356677777888889998 77765
Q ss_pred cCccHHHHHHHH
Q 013271 186 GGGVIGDMCGYA 197 (446)
Q Consensus 186 GGGsv~D~aK~i 197 (446)
+.|. |.+.++
T Consensus 197 ~~~~--~~~~~~ 206 (360)
T cd06357 197 LVGQ--SSYAFY 206 (360)
T ss_pred CCCC--ChHHHH
Confidence 5443 444444
No 268
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=25.90 E-value=5.2e+02 Score=23.72 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeE
Q 013271 128 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 207 (446)
Q Consensus 128 ~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~ 207 (446)
..+.+.+.+.+++.| +++ .+++.. . +.+...+.++.+...++| .||..+.... +....+......++|+
T Consensus 15 ~~~~~~~~~~a~~~g--~~~--~~~~~~-~--~~~~~~~~~~~l~~~~vd---gvi~~~~~~~-~~~~~~~~l~~~~ip~ 83 (267)
T cd01536 15 QAMNKGAEAAAKELG--VEL--IVLDAQ-N--DVSKQIQQIEDLIAQGVD---GIIISPVDSA-ALTPALKKANAAGIPV 83 (267)
T ss_pred HHHHHHHHHHHHhcC--ceE--EEECCC-C--CHHHHHHHHHHHHHcCCC---EEEEeCCCch-hHHHHHHHHHHCCCcE
Confidence 336777778888887 333 333322 1 335555677777777888 8888765422 1111222233578999
Q ss_pred EEEcCC
Q 013271 208 IQIPTT 213 (446)
Q Consensus 208 i~IPTT 213 (446)
|.+-++
T Consensus 84 V~~~~~ 89 (267)
T cd01536 84 VTVDSD 89 (267)
T ss_pred EEecCC
Confidence 998665
No 269
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=25.88 E-value=2.3e+02 Score=26.26 Aligned_cols=87 Identities=16% Similarity=0.054 Sum_probs=50.8
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
|+.|=+|..-++ +.+.|.+.|++.| ++|..+--.+.++..-.+...++.+.+.+..+|| .|+--|.|.=+-++
T Consensus 2 kI~igsDhaG~~-lK~~l~~~L~~~G--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~--GIliCGTGiG~sia-- 74 (171)
T PRK12615 2 KIAIGCDHIVTN-EKMAVSDFLKSKG--YDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADL--GVCICGTGVGINNA-- 74 (171)
T ss_pred EEEEEeCchhHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCE--EEEEcCCcHHHHHH--
Confidence 466667776544 5788999999999 5554332222233223456667777777777775 55555555544443
Q ss_pred HHHhhcCCCeEEEEcC
Q 013271 197 AAASYLRGVSFIQIPT 212 (446)
Q Consensus 197 iAa~~~~g~p~i~IPT 212 (446)
+--.+|+.-..+-.
T Consensus 75 --ANK~~GIRAA~~~d 88 (171)
T PRK12615 75 --VNKVPGIRSALVRD 88 (171)
T ss_pred --HhcCCCeEEEEeCC
Confidence 22235666655543
No 270
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=25.72 E-value=4.9e+02 Score=23.35 Aligned_cols=72 Identities=10% Similarity=0.175 Sum_probs=43.3
Q ss_pred HHHHHHHHHhc--CCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeE
Q 013271 130 YLDKVTDALTR--GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 207 (446)
Q Consensus 130 ~~~~v~~~L~~--~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~ 207 (446)
+.+.+.+.+++ .+ +....++. .. +.+...+.++.+.+.++| .||+.+....... ........++|+
T Consensus 18 ~~~~~~~~~~~~g~~----~~~~~~~~-~~--~~~~~~~~~~~~~~~~~d---~ii~~~~~~~~~~--~~~~~~~~~ip~ 85 (269)
T cd01391 18 LLAGIELAAEEIGRG----LEVILADS-QS--DPERALEALRDLIQQGVD---GIIGPPSSSSALA--VVELAAAAGIPV 85 (269)
T ss_pred HHHHHHHHHHHhCCc----eEEEEecC-CC--CHHHHHHHHHHHHHcCCC---EEEecCCCHHHHH--HHHHHHHcCCcE
Confidence 55666677777 44 33344432 22 335677777777777888 8887766543321 222234578999
Q ss_pred EEEcCC
Q 013271 208 IQIPTT 213 (446)
Q Consensus 208 i~IPTT 213 (446)
|.+-++
T Consensus 86 v~~~~~ 91 (269)
T cd01391 86 VSLDAT 91 (269)
T ss_pred EEecCC
Confidence 998655
No 271
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=25.54 E-value=5.7e+02 Score=24.07 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEE
Q 013271 130 YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQ 209 (446)
Q Consensus 130 ~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~ 209 (446)
+.+.+.+.+++.| +.+ .++. .+.+++.+.-.+.++.+...++| .||-.+...- ... .+......++|+|.
T Consensus 17 ~~~gi~~~a~~~g--~~~--~~~~-~~~~~~~~~~~~~i~~~~~~~vd---giI~~~~~~~-~~~-~~~~~~~~giPvV~ 86 (268)
T cd06306 17 VNYGMVEEAKRLG--VSL--KLLE-AGGYPNLAKQIAQLEDCAAWGAD---AILLGAVSPD-GLN-EILQQVAASIPVIA 86 (268)
T ss_pred HHHHHHHHHHHcC--CEE--EEec-CCCCCCHHHHHHHHHHHHHcCCC---EEEEcCCChh-hHH-HHHHHHHCCCCEEE
Confidence 5566777788888 343 3333 22223455566677777888998 8886654321 111 22223457999998
Q ss_pred Ec
Q 013271 210 IP 211 (446)
Q Consensus 210 IP 211 (446)
+=
T Consensus 87 ~~ 88 (268)
T cd06306 87 LV 88 (268)
T ss_pred ec
Confidence 83
No 272
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=25.53 E-value=4.9e+02 Score=24.18 Aligned_cols=127 Identities=15% Similarity=0.197 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCC
Q 013271 126 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 126 v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~ 205 (446)
.+..+.+.+.+.+++.| +.+ .++. .+. +.+.-.+.++.+...++| .||-+|....-++.+.+ ...++
T Consensus 13 ~~~~~~~~i~~~~~~~g--~~~--~~~~-~~~--~~~~~~~~~~~l~~~~vd---giii~~~~~~~~~~~~l---~~~~i 79 (268)
T cd06273 13 IFARVIQAFQETLAAHG--YTL--LVAS-SGY--DLDREYAQARKLLERGVD---GLALIGLDHSPALLDLL---ARRGV 79 (268)
T ss_pred hHHHHHHHHHHHHHHCC--CEE--EEec-CCC--CHHHHHHHHHHHHhcCCC---EEEEeCCCCCHHHHHHH---HhCCC
Confidence 34446778888888888 443 3333 222 334445666667777888 88878765444444332 34789
Q ss_pred eEEEEcCCcCccccccccCeEEEeeCC-c----ccccccccCceEEEEehHhhccCCHHHHHhHHHHHHH
Q 013271 206 SFIQIPTTVMAQVDSSVGGKTGINHRL-G----KNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIK 270 (446)
Q Consensus 206 p~i~IPTTl~A~tds~v~~k~~i~~~~-~----K~~ig~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalk 270 (446)
|+|.+=+... +... .....+... + +.+... -.-..+++........+......|+.++++
T Consensus 80 Pvv~~~~~~~---~~~~-~~v~~d~~~~~~~~~~~l~~~-g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~ 144 (268)
T cd06273 80 PYVATWNYSP---DSPY-PCVGFDNREAGRLAARHLIAL-GHRRIAMIFGPTQGNDRARARRAGVRAALA 144 (268)
T ss_pred CEEEEcCCCC---CCCC-CEEEeChHHHHHHHHHHHHHC-CCCeEEEEeccccCCccHHHHHHHHHHHHH
Confidence 9999865411 1111 222233211 1 111111 133556664322122345566778888884
No 273
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=25.50 E-value=4.5e+02 Score=26.82 Aligned_cols=71 Identities=11% Similarity=0.160 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEE
Q 013271 129 LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFI 208 (446)
Q Consensus 129 ~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i 208 (446)
...+-+.+.|++.|.. .+.+ .+.+. +-+...+..+.+.+...+.| +|+++++=+..-+.+.+ .++|++
T Consensus 46 ~~~~G~~~aLk~~G~~-n~~i-~~~na--~~~~~~a~~iarql~~~~~d---viv~i~tp~Aq~~~s~~-----~~iPVV 113 (322)
T COG2984 46 AAREGVKEALKDAGYK-NVKI-DYQNA--QGDLGTAAQIARQLVGDKPD---VIVAIATPAAQALVSAT-----KTIPVV 113 (322)
T ss_pred HHHHHHHHHHHhcCcc-CeEE-EeecC--CCChHHHHHHHHHhhcCCCc---EEEecCCHHHHHHHHhc-----CCCCEE
Confidence 3677788899999841 3332 23333 34778899999888877776 99999887666555433 457776
Q ss_pred EEc
Q 013271 209 QIP 211 (446)
Q Consensus 209 ~IP 211 (446)
.=-
T Consensus 114 ~aa 116 (322)
T COG2984 114 FAA 116 (322)
T ss_pred EEc
Confidence 543
No 274
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=25.46 E-value=7.4e+02 Score=25.35 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=31.3
Q ss_pred chhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 013271 329 GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT 387 (446)
Q Consensus 329 gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~ 387 (446)
|..++|+|++. . .-.|+..-+.+..+ .+-.-+.+..+...+++.++.+.+|++.
T Consensus 254 g~g~~Hal~h~--l-~~~~~i~HG~~~ai--~lp~v~~~~~~~~~~~~~~la~~~g~~~ 307 (374)
T cd08189 254 GVGYVHAIAHQ--L-GGVYGIPHGLANAI--VLPHVLEFYGDAAEDRLAELADALGLGD 307 (374)
T ss_pred cHHHHHHhhhh--h-hcCCCCChHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHcCCCC
Confidence 45678888765 3 34555555544433 3333322223445578888888888865
No 275
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=25.39 E-value=2.6e+02 Score=27.79 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcC-CCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeE
Q 013271 129 LYLDKVTDALTRG-NPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 207 (446)
Q Consensus 129 ~~~~~v~~~L~~~-gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~ 207 (446)
...+-+.+.-++. + ++ ......... +.+...+.++.+.+.|+| +||+.|..-. |...-+|..| ..+.|
T Consensus 20 ~~~~G~~~~~~~~~~--i~--~~~~e~~~~--~~~~~~~~~~~~~~~g~d---lIi~~g~~~~-~~~~~vA~~y-Pd~~F 88 (306)
T PF02608_consen 20 SAYEGLKRAEKELDG--IE--IIYVENVPE--TDADYEEAIRQLADQGYD---LIIGHGFEYS-DALQEVAKEY-PDTKF 88 (306)
T ss_dssp HHHHHHHHHHHHCTT--EE--EEEEES-S---TCHHHHHHHHHHHHTT-S---EEEEESGGGH-HHHHHHHTC--TTSEE
T ss_pred HHHHHHHHHHHHcCC--ce--EEEEecCCc--cHHHHHHHHHHHHHcCCC---EEEEccHHHH-HHHHHHHHHC-CCCEE
Confidence 3444444444555 5 33 333333221 357888888889999999 8888776665 4444455444 66788
Q ss_pred EEEcCC
Q 013271 208 IQIPTT 213 (446)
Q Consensus 208 i~IPTT 213 (446)
+.+=++
T Consensus 89 ~~~d~~ 94 (306)
T PF02608_consen 89 IIIDGY 94 (306)
T ss_dssp EEESS-
T ss_pred EEEecC
Confidence 887555
No 276
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=25.25 E-value=2e+02 Score=27.95 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccH-------------HHHHHHHHHhhcC-CCeEEEEcCC
Q 013271 157 NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI-------------GDMCGYAAASYLR-GVSFIQIPTT 213 (446)
Q Consensus 157 ~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv-------------~D~aK~iAa~~~~-g~p~i~IPTT 213 (446)
.+.+.+.+.+-.+++.+.|+| ||=|||+|. -.+...+...... ++| ++|=|+
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAd----iIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p-iSIDT~ 84 (258)
T cd00423 19 KFLSLDKALEHARRMVEEGAD----IIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP-ISVDTF 84 (258)
T ss_pred ccCCHHHHHHHHHHHHHCCCC----EEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCC
Confidence 345777777777888899998 999999998 3455555443333 566 466664
No 277
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.24 E-value=4.9e+02 Score=24.35 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH--HHHHHHHhhcCC
Q 013271 127 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD--MCGYAAASYLRG 204 (446)
Q Consensus 127 ~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D--~aK~iAa~~~~g 204 (446)
+..+.+.+.+.+++.| +.+. ++.. +.+.+.-.+.++.+...++| .||-++...... ....+.....++
T Consensus 14 ~~~~~~gi~~~~~~~g--~~~~--~~~~---~~~~~~~~~~i~~l~~~~vd---giIi~~~~~~~~~~~~~~i~~~~~~~ 83 (273)
T cd06292 14 FPAFAEAIEAALAQYG--YTVL--LCNT---YRGGVSEADYVEDLLARGVR---GVVFISSLHADTHADHSHYERLAERG 83 (273)
T ss_pred HHHHHHHHHHHHHHCC--CEEE--EEeC---CCChHHHHHHHHHHHHcCCC---EEEEeCCCCCcccchhHHHHHHHhCC
Confidence 3446788888899988 4442 2222 12335556777888888998 888887432111 122233334679
Q ss_pred CeEEEEcCC
Q 013271 205 VSFIQIPTT 213 (446)
Q Consensus 205 ~p~i~IPTT 213 (446)
+|+|.+=+.
T Consensus 84 ipvV~i~~~ 92 (273)
T cd06292 84 LPVVLVNGR 92 (273)
T ss_pred CCEEEEcCC
Confidence 999999765
No 278
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.10 E-value=5.8e+02 Score=23.95 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeE
Q 013271 128 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 207 (446)
Q Consensus 128 ~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~ 207 (446)
..+.+.+.+.+++.| +.+. ++.. +. .+.+...+.++.+...++| .||-.+...- .+...+...-..++|+
T Consensus 16 ~~~~~g~~~~~~~~g--~~v~--~~~~-~~-~~~~~~~~~i~~l~~~~vd---giii~~~~~~-~~~~~l~~~~~~~ipv 85 (271)
T cd06312 16 TVVKNGAEDAAKDLG--VDVE--YRGP-ET-FDVADMARLIEAAIAAKPD---GIVVTIPDPD-ALDPAIKRAVAAGIPV 85 (271)
T ss_pred HHHHHHHHHHHHHhC--CEEE--EECC-CC-CCHHHHHHHHHHHHHhCCC---EEEEeCCChH-HhHHHHHHHHHCCCeE
Confidence 336677778888888 3443 3322 11 1345556677777788888 8887764321 0122232233468999
Q ss_pred EEEcCC
Q 013271 208 IQIPTT 213 (446)
Q Consensus 208 i~IPTT 213 (446)
|.+=..
T Consensus 86 V~~~~~ 91 (271)
T cd06312 86 ISFNAG 91 (271)
T ss_pred EEeCCC
Confidence 998543
No 279
>PRK06110 hypothetical protein; Provisional
Probab=24.87 E-value=6.3e+02 Score=25.26 Aligned_cols=103 Identities=9% Similarity=0.107 Sum_probs=47.2
Q ss_pred ceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCc-H----HHHHH
Q 013271 93 SYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN-M----DTLMK 166 (446)
Q Consensus 93 ~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t-~----~~v~~ 166 (446)
+..|+..++.-.. .+.++. .+.+++.+ +....+ ..+...+..++.+. +.++.- ++. . ....+
T Consensus 95 ~~~ivvp~~~~~~k~~~i~~--~GA~V~~~-~~~~~~-~~~~a~~~~~~~~~------~~~~~~--~~~~~~G~~t~~~E 162 (322)
T PRK06110 95 AATIVVPHGNSVEKNAAMRA--LGAELIEH-GEDFQA-AREEAARLAAERGL------HMVPSF--HPDLVRGVATYALE 162 (322)
T ss_pred CEEEEEcCCCCHHHHHHHHH--cCCEEEEE-CCCHHH-HHHHHHHHHHhcCC------EEcCCC--CChHHhccchHHHH
Confidence 3556666655333 445554 45666654 544322 33444444444441 222322 121 1 23334
Q ss_pred HHHHHHHcCCCCcceEEEEcCccH-HHHHHHHHHhhcCCCeEEEEcC
Q 013271 167 VFDKAIESRLDRRCTFVALGGGVI-GDMCGYAAASYLRGVSFIQIPT 212 (446)
Q Consensus 167 ~~~~~~~~~~dr~~~IIAiGGGsv-~D~aK~iAa~~~~g~p~i~IPT 212 (446)
+++++ + +.+.+|+.+|||.. .=++++.. .+...+++|.|-.
T Consensus 163 i~~q~---~-~~D~vv~pvG~Gg~~~Gv~~~~k-~~~~~~~vi~Vep 204 (322)
T PRK06110 163 LFRAV---P-DLDVVYVPIGMGSGICGAIAARD-ALGLKTRIVGVVS 204 (322)
T ss_pred HHhhC---C-CCCEEEEecCHHHHHHHHHHHHH-HhCCCCEEEEEee
Confidence 44332 2 23458888888863 23333321 1234466666644
No 280
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.85 E-value=5.4e+02 Score=25.29 Aligned_cols=81 Identities=19% Similarity=0.103 Sum_probs=44.2
Q ss_pred hHhhhcCCCCEEEEEECCCc-hh-HHHHHHHHHHhc-CCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTV-AP-LYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 183 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v-~~-~~~~~v~~~L~~-~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~II 183 (446)
+++.+..+.+++.++.+..- +. .+.+.+.+.+++ .|. ++. ..++-. .++. .....+.++++.++| +|+
T Consensus 126 ~~~~~~~~~~~v~~i~~~~~~~g~~~~~~~~~~~~~~~g~--~v~-~~~~~~--~~~~-~~~~~v~~i~~~~~d---~v~ 196 (332)
T cd06344 126 KYLKKKNKIKKVAIFYNSTSPYSQSLKQEFTSALLERGGG--IVV-TPCDLS--SPDF-NANTAVSQAINNGAT---VLV 196 (332)
T ss_pred HHHHhhcCCCeEEEEeCCCchHhHHHHHHHHHHHHHhcCC--eee-eeccCC--CCCC-CHHHHHHHHHhcCCC---EEE
Confidence 45554322688888876543 43 367778888887 463 221 111111 1122 233445555667777 887
Q ss_pred EEcCccHHHHHHHHH
Q 013271 184 ALGGGVIGDMCGYAA 198 (446)
Q Consensus 184 AiGGGsv~D~aK~iA 198 (446)
..+.|. ++..++.
T Consensus 197 ~~~~~~--~~~~~~~ 209 (332)
T cd06344 197 LFPDTD--TLDKALE 209 (332)
T ss_pred EeCChh--HHHHHHH
Confidence 776654 5555554
No 281
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=24.79 E-value=1.7e+02 Score=32.19 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=51.9
Q ss_pred CCCEEEEEECCCch-----hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCc
Q 013271 114 QGKKVLVVTNNTVA-----PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGG 188 (446)
Q Consensus 114 ~~k~vliVtd~~v~-----~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGG 188 (446)
..++.||+.++.-. +.+.+.+.-.|.++++++++..-.. | .-..+++ +....++-|.||.+||-
T Consensus 178 r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~------~--~HArei~---rt~dl~kyDgIv~vsGD 246 (579)
T KOG1116|consen 178 RPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTR------P--NHAREIV---RTLDLGKYDGIVCVSGD 246 (579)
T ss_pred CCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecC------c--cHHHHHH---HhhhccccceEEEecCC
Confidence 46889999997543 3477888888999997554422111 1 2233343 33355666699999884
Q ss_pred cH-HHHHHHHHHhhc-------CCCeEEEEcCC
Q 013271 189 VI-GDMCGYAAASYL-------RGVSFIQIPTT 213 (446)
Q Consensus 189 sv-~D~aK~iAa~~~-------~g~p~i~IPTT 213 (446)
-+ -.+-- ..+. +.+|+=.||-.
T Consensus 247 Gl~hEVlN---GLl~R~D~~~~~klPigiiP~G 276 (579)
T KOG1116|consen 247 GLLHEVLN---GLLERPDWEAAVKLPIGIIPCG 276 (579)
T ss_pred cCHHHhhh---ccccccchhhHhcCceeEeecC
Confidence 43 33321 1222 46888888844
No 282
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=24.78 E-value=3.6e+02 Score=26.52 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=48.4
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeE-EEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSV-ENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v-~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
.++.+. ..+|+.++.....+.. ..+.+.+.+++.|. ++ ....++. +..+....+..+++.++| .|+-
T Consensus 125 ~~~~~~-~~~~v~il~~d~~~g~~~~~~~~~~~~~~G~--~vv~~~~~~~-----~~~d~~~~v~~~~~~~~d---~v~~ 193 (333)
T cd06331 125 PYLMEK-YGKRFYLIGSDYVWPRESNRIARALLEELGG--EVVGEEYLPL-----GTSDFGSVIEKIKAAGPD---VVLS 193 (333)
T ss_pred HHHHHh-cCCeEEEECCCchhHHHHHHHHHHHHHHcCC--EEEEEEEecC-----CcccHHHHHHHHHHcCCC---EEEE
Confidence 344333 3688888876655543 67888888888884 33 2233442 235566777778888888 6665
Q ss_pred EcCc-cHHHHHHHH
Q 013271 185 LGGG-VIGDMCGYA 197 (446)
Q Consensus 185 iGGG-sv~D~aK~i 197 (446)
.|.+ ...-+.|.+
T Consensus 194 ~~~~~~~~~~~~~~ 207 (333)
T cd06331 194 TLVGDSNVAFYRQF 207 (333)
T ss_pred ecCCCChHHHHHHH
Confidence 5443 334444443
No 283
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=24.74 E-value=4.2e+02 Score=27.06 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=53.5
Q ss_pred hHhhhcCCCCEEEEEECCCchhH----HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL----YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 182 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~----~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~I 182 (446)
++++.+ +.+++.+|++..-+.. ..+.+.+.+++.|+ ++...... .........+++.+++.+ + +|
T Consensus 130 ~ll~~~-~W~~vaiiy~~~~~~~~~~~~~~~l~~~~~~~gi--~v~~~~~~----~~~~~d~~~~l~~ik~~~-r---vi 198 (387)
T cd06386 130 ALFERF-HWRSALLVYEDDKQERNCYFTLEGVHHVFQEEGY--HMSIYPFD----ETKDLDLDEIIRAIQASE-R---VV 198 (387)
T ss_pred HHHHhC-CCeEEEEEEEcCCCCccceehHHHHHHHHHhcCc--eEEEEecC----CCCcccHHHHHHHHHhcC-c---EE
Confidence 445444 4688888876554332 27788888998885 33332222 112245667777777766 5 77
Q ss_pred EEEcCccHHHHHHHHHHhhcC---CCeEEEEcCC
Q 013271 183 VALGGGVIGDMCGYAAASYLR---GVSFIQIPTT 213 (446)
Q Consensus 183 IAiGGGsv~D~aK~iAa~~~~---g~p~i~IPTT 213 (446)
|-.+.. -++..++..+... +-.++-|.+-
T Consensus 199 i~~~~~--~~~~~ll~~A~~~gm~~~~yv~i~~d 230 (387)
T cd06386 199 IMCAGA--DTIRSIMLAAHRRGLTSGDYIFFNIE 230 (387)
T ss_pred EEecCH--HHHHHHHHHHHHcCCCCCCEEEEEEe
Confidence 766544 4555555444333 3455555543
No 284
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=24.28 E-value=2.5e+02 Score=29.78 Aligned_cols=70 Identities=10% Similarity=0.138 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCCCeeEEEEEe-CCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc--CccHHHHHHHHHH
Q 013271 130 YLDKVTDALTRGNPNVSVENVIL-PDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG--GGVIGDMCGYAAA 199 (446)
Q Consensus 130 ~~~~v~~~L~~~gi~~~v~~~i~-~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG--GGsv~D~aK~iAa 199 (446)
|.+++.....+.||.++-+.+-. .+.-..|++......++.+...+.+=+++.+.++ |--..|+||+-|.
T Consensus 151 y~~rl~~~y~e~gv~in~E~fg~l~~~l~pptla~aiaylea~la~glgV~~lS~~f~~~~n~~qDIAk~RA~ 223 (428)
T cd00245 151 YCDRLVGFYEENGVPINREPFGPLTGTLVPPSILIAIQILEALLAAEQGVKSISVGYAQQGNLTQDIAALRAL 223 (428)
T ss_pred HHHHHHHHHHhcCceecccCCcCcccCcCCcHHHHHHHHHHHHHHccCCCCEEEEEeecCCCHHHHHHHHHHH
Confidence 56888888899996433222211 1122368999999999977776665555555555 5555999999875
No 285
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=24.26 E-value=5.7e+02 Score=24.89 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=53.7
Q ss_pred CchhHHHHHHHHHHhcCCCCeeEEEEEe-CCCCC-CCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhc
Q 013271 125 TVAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL 202 (446)
Q Consensus 125 ~v~~~~~~~v~~~L~~~gi~~~v~~~i~-~~ge~-~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~ 202 (446)
.+...-..+..+.+-+.|++ - .++. ..||. .=|.++-.++++.+.+.-.+|-.+++++|+.++-|+.+.+-....
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~--g-l~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~ 93 (284)
T cd00950 17 SVDFDALERLIEFQIENGTD--G-LVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEK 93 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCC--E-EEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHH
Confidence 34333455555666677742 1 1222 33453 567788888888877775555568999999999998887765556
Q ss_pred CCCeEEEE
Q 013271 203 RGVSFIQI 210 (446)
Q Consensus 203 ~g~p~i~I 210 (446)
.|...+.+
T Consensus 94 ~G~d~v~~ 101 (284)
T cd00950 94 AGADAALV 101 (284)
T ss_pred cCCCEEEE
Confidence 67665444
No 286
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=24.23 E-value=2.1e+02 Score=24.58 Aligned_cols=58 Identities=24% Similarity=0.314 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCcc--HHHHHHHH
Q 013271 129 LYLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV--IGDMCGYA 197 (446)
Q Consensus 129 ~~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGs--v~D~aK~i 197 (446)
.....+.+.|++.|. ++.. .+++ -+.+.+.+.++.+.+ ++| +||..||-+ .-|...-+
T Consensus 18 ~~~~~l~~~l~~~G~--~~~~~~~v~-----Dd~~~I~~~l~~~~~-~~d---liittGG~g~g~~D~t~~~ 78 (135)
T smart00852 18 SNGPALAELLTELGI--EVTRYVIVP-----DDKEAIKEALREALE-RAD---LVITTGGTGPGPDDVTPEA 78 (135)
T ss_pred CcHHHHHHHHHHCCC--eEEEEEEeC-----CCHHHHHHHHHHHHh-CCC---EEEEcCCCCCCCCcCcHHH
Confidence 345667777888884 4322 2333 245667777766654 466 999998855 44555443
No 287
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=24.18 E-value=5.3e+02 Score=23.84 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=40.9
Q ss_pred chhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCC
Q 013271 126 VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 126 v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~ 205 (446)
.+..+.+.+.+.+++.| +.+.+.... + ..+..+.+.+.+...++| .||..+.....+. +......++
T Consensus 17 ~~~~~~~~i~~~~~~~g--~~~~~~~~~--~---~~~~~~~~~~~~~~~~vd---giii~~~~~~~~~---~~~~~~~~i 83 (268)
T cd06271 17 FFAEFLSGLSEALAEHG--YDLVLLPVD--P---DEDPLEVYRRLVESGLVD---GVIISRTRPDDPR---VALLLERGF 83 (268)
T ss_pred cHHHHHHHHHHHHHHCC--ceEEEecCC--C---cHHHHHHHHHHHHcCCCC---EEEEecCCCCChH---HHHHHhcCC
Confidence 44457788888888888 344332221 1 123333444444455677 8887765422111 222235789
Q ss_pred eEEEEcCC
Q 013271 206 SFIQIPTT 213 (446)
Q Consensus 206 p~i~IPTT 213 (446)
|+|.+-..
T Consensus 84 pvV~~~~~ 91 (268)
T cd06271 84 PFVTHGRT 91 (268)
T ss_pred CEEEECCc
Confidence 99998543
No 288
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=24.18 E-value=5.7e+02 Score=26.13 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=50.5
Q ss_pred HhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCC--CcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 108 LLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENY--KNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 108 ~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~--~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
+++.+ +.+++.++++..-+.. ..+.+.+.+++.|+++. ....++.++.. .+...+..++..++.. .+ .+|.
T Consensus 130 ~~~~~-~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~iv-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~---~~v~ 203 (404)
T cd06370 130 LLKHF-NWNKFSVVYENDSKYSSVFETLKEEAELRNITIS-HVEYYADFYPPDPIMDNPFEDIIQRTKET-TR---IYVF 203 (404)
T ss_pred HHHHC-CCcEEEEEEecCcccHHHHHHHHHHHHHcCCEEE-EEEEECCCCCchhhhHHHHHHHHHhccCC-CE---EEEE
Confidence 34443 4689999988665443 77888888988885321 22334433210 1134556666554432 23 6777
Q ss_pred EcCccHHHHHHHHHHhhcCCC
Q 013271 185 LGGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 185 iGGGsv~D~aK~iAa~~~~g~ 205 (446)
+|+. -|...++..+...|+
T Consensus 204 ~~~~--~~~~~~l~qa~~~g~ 222 (404)
T cd06370 204 IGEA--NELRQFLMSMLDEGL 222 (404)
T ss_pred EcCH--HHHHHHHHHHHHcCC
Confidence 7653 566666654444443
No 289
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=24.14 E-value=1.1e+02 Score=29.71 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=28.2
Q ss_pred CcceEEEEcCccHHHHH-HHHHHhhc-CCCeEEEEcCCcC
Q 013271 178 RRCTFVALGGGVIGDMC-GYAAASYL-RGVSFIQIPTTVM 215 (446)
Q Consensus 178 r~~~IIAiGGGsv~D~a-K~iAa~~~-~g~p~i~IPTTl~ 215 (446)
++..+||+|.||+.-.. ++++...+ .++.+..|||+..
T Consensus 20 ~~gmvvGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS~~ 59 (228)
T PRK13978 20 NGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNK 59 (228)
T ss_pred CCCCEEEeCchHHHHHHHHHHHHHhhccCccEEEEeCcHH
Confidence 45689999999998844 77765443 3567888999954
No 290
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=24.12 E-value=3.7e+02 Score=26.99 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEEcCc-cHHHHHHHHHHhhcCCCeEEEE
Q 013271 162 DTLMKVFDKAIESRLDRRCTFVALGGG-VIGDMCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 162 ~~v~~~~~~~~~~~~dr~~~IIAiGGG-sv~D~aK~iAa~~~~g~p~i~I 210 (446)
..+.++.+.+++.++| +|+.+|.- ...=+++. +...++|++..
T Consensus 72 ~~~~~~~~~l~~~kPd---ivi~~~~~~~~~~~a~~---a~~~~ip~i~~ 115 (380)
T PRK00025 72 KIRRRLKRRLLAEPPD---VFIGIDAPDFNLRLEKK---LRKAGIPTIHY 115 (380)
T ss_pred HHHHHHHHHHHHcCCC---EEEEeCCCCCCHHHHHH---HHHCCCCEEEE
Confidence 4556677778888888 99999842 12222322 23458887765
No 291
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=24.05 E-value=3.3e+02 Score=28.54 Aligned_cols=103 Identities=23% Similarity=0.296 Sum_probs=61.1
Q ss_pred eeEEEccCcCCChhHhhhc-CCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHH
Q 013271 94 YPIYIGSGLLDHPDLLQKH-VQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAI 172 (446)
Q Consensus 94 ~~I~~G~g~~~~~~~l~~~-~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~ 172 (446)
.-++-|+|...-...+.+. ..+.|+|++.+.. |++++.+.++..|. ++..+..+-|++ .+.+.|++.++ +
T Consensus 58 ~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~----FG~R~~~ia~~~g~--~v~~~~~~wg~~-v~p~~v~~~L~--~ 128 (383)
T COG0075 58 VVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGK----FGERFAEIAERYGA--EVVVLEVEWGEA-VDPEEVEEALD--K 128 (383)
T ss_pred EEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCh----HHHHHHHHHHHhCC--ceEEEeCCCCCC-CCHHHHHHHHh--c
Confidence 4455677775442222222 2578999998775 45556666667773 556666666665 66778887776 2
Q ss_pred HcCCCCcceEEEE-----cCccHHHHHHHHHHhhcCCCeEEE
Q 013271 173 ESRLDRRCTFVAL-----GGGVIGDMCGYAAASYLRGVSFIQ 209 (446)
Q Consensus 173 ~~~~dr~~~IIAi-----GGGsv~D~aK~iAa~~~~g~p~i~ 209 (446)
...++ .|++ =.|...|+....++....+.-+|.
T Consensus 129 ~~~~~----~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iV 166 (383)
T COG0075 129 DPDIK----AVAVVHNETSTGVLNPLKEIAKAAKEHGALLIV 166 (383)
T ss_pred CCCcc----EEEEEeccCcccccCcHHHHHHHHHHcCCEEEE
Confidence 33343 4443 357777877666555555655543
No 292
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=24.01 E-value=7.3e+02 Score=24.72 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=54.6
Q ss_pred hHhhhcCCCCEEEEEECCCch-hHHHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVA-PLYLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~-~~~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
++++.+ +.+++.+|++..-+ +...+.+.+.+++.|+.+.+.. ..++.. .. +........+++.+.+ +||.
T Consensus 129 ~ll~~~-~w~~vaii~~~~~~g~~~~~~l~~~l~~~g~~~~i~~~~~~~~~-~~---~~~~~~l~~l~~~~~~---vivl 200 (362)
T cd06367 129 EILEEY-DWHQFSVVTSRDPGYRDFLDRVETTLEESFVGWEFQLVLTLDLS-DD---DGDARLLRQLKKLESR---VILL 200 (362)
T ss_pred HHHHHc-CCeEEEEEEEcCcccHHHHHHHHHHHHhcccceeeeeeEEeccC-CC---cchHHHHHHHHhcCCc---EEEE
Confidence 455554 57889988876554 3377888888988885421322 222221 11 1445566666777766 6664
Q ss_pred EcCccHHHHHHHHHHhhcCCC---eEEEEcCC
Q 013271 185 LGGGVIGDMCGYAAASYLRGV---SFIQIPTT 213 (446)
Q Consensus 185 iGGGsv~D~aK~iAa~~~~g~---p~i~IPTT 213 (446)
.| ..-|...++..+...|+ .++-|-|.
T Consensus 201 ~~--~~~~~~~il~~a~~~g~~~~~~~wI~~~ 230 (362)
T cd06367 201 YC--SKEEAERIFEAAASLGLTGPGYVWIVGE 230 (362)
T ss_pred eC--CHHHHHHHHHHHHHcCCCCCCcEEEECc
Confidence 44 45666666544433332 25555555
No 293
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=23.83 E-value=5.6e+02 Score=23.35 Aligned_cols=86 Identities=9% Similarity=0.029 Sum_probs=44.9
Q ss_pred hHhhhcCCCCEEEEEECCCc--h-hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTV--A-PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 183 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v--~-~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~II 183 (446)
+.+.+. +.+++.++++... . ..-.+-+.+.+++.++.+..... ... + .+.+.....+..+.+.+. ..++|+
T Consensus 109 ~~l~~~-g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~~l~~~~-~~~~i~ 182 (264)
T cd06267 109 EHLIEL-GHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELI-VEG-D--FSEESGYEAARELLASGE-RPTAIF 182 (264)
T ss_pred HHHHHC-CCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceE-Eec-c--cchhhHHHHHHHHHhcCC-CCcEEE
Confidence 344443 4678888876643 1 22345566777777632222212 221 1 123444444444444441 123999
Q ss_pred EEcCccHHHHHHHHH
Q 013271 184 ALGGGVIGDMCGYAA 198 (446)
Q Consensus 184 AiGGGsv~D~aK~iA 198 (446)
+.+++...-+++.+.
T Consensus 183 ~~~~~~a~~~~~al~ 197 (264)
T cd06267 183 AANDLMAIGALRALR 197 (264)
T ss_pred EcCcHHHHHHHHHHH
Confidence 988877766766654
No 294
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=23.76 E-value=5.3e+02 Score=23.09 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=56.4
Q ss_pred EEEccCcCCC----hhHhhhcCCCCEEEEEECCCc-h-hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 96 IYIGSGLLDH----PDLLQKHVQGKKVLVVTNNTV-A-PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 96 I~~G~g~~~~----~~~l~~~~~~k~vliVtd~~v-~-~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
..++.+.... .+++... +.+++.++++... . ....+-+.+.+++.+. ++...... ... +.+..+.+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~-~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~-~~~~~~~~~~ 175 (269)
T cd01391 102 FRVGPDNEQAGEAAAEYLAEK-GWKRVALIYGDDGAYGRERLEGFKAALKKAGI--EVVAIEYG--DLD-TEKGFQALLQ 175 (269)
T ss_pred EEEcCCcHHHHHHHHHHHHHh-CCceEEEEecCCcchhhHHHHHHHHHHHhcCc--EEEecccc--CCC-ccccHHHHHH
Confidence 3455544322 3455554 4788888887662 2 2256667777777763 32212111 111 1134455555
Q ss_pred HHHHc-CCCCcceEEEEcCccHHHHHHHHHHhhc--CCCeEEEEc
Q 013271 170 KAIES-RLDRRCTFVALGGGVIGDMCGYAAASYL--RGVSFIQIP 211 (446)
Q Consensus 170 ~~~~~-~~dr~~~IIAiGGGsv~D~aK~iAa~~~--~g~p~i~IP 211 (446)
.+.+. +.+ +|+..+.....-+.+.+...-. ..++++.+-
T Consensus 176 ~l~~~~~~~---~i~~~~~~~a~~~~~~~~~~g~~~~~~~ii~~~ 217 (269)
T cd01391 176 LLKAAPKPD---AIFACNDEMAAGALKAAREAGLTPGDISIIGFD 217 (269)
T ss_pred HHhcCCCCC---EEEEcCchHHHHHHHHHHHcCCCCCCCEEEecc
Confidence 55555 466 8998887555555555543322 245555443
No 295
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=23.68 E-value=2e+02 Score=22.83 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=20.8
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
...+.++++.+++++.|++ .||++
T Consensus 26 d~d~Al~eM~e~A~~lGAn---AVVGv 49 (74)
T TIGR03884 26 NVDEIVENLREKVKAKGGM---GLIAF 49 (74)
T ss_pred CHHHHHHHHHHHHHHcCCC---EEEEE
Confidence 3457899999999999999 99996
No 296
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=23.62 E-value=4e+02 Score=24.21 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=36.0
Q ss_pred CCEEEEEECCCc---hhHHHHHHHHHHhcCCCCee-EEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc
Q 013271 115 GKKVLVVTNNTV---APLYLDKVTDALTRGNPNVS-VENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG 186 (446)
Q Consensus 115 ~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~-v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG 186 (446)
.-|+.||.-+.= .+.+.+--.+.|.+.|...+ +..+.+|+. +|.=--+-+.++..+.| .||++|
T Consensus 12 ~~riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa-----~EiPl~a~~La~~~~yD---Avv~lG 79 (152)
T COG0054 12 GLRIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGA-----FEIPLAAKKLARTGKYD---AVVALG 79 (152)
T ss_pred CceEEEEEeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCc-----chhHHHHHHHHhcCCcc---eEEEEe
Confidence 347777766542 23356666677888775443 345566653 23222222233444466 999998
No 297
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.47 E-value=2.7e+02 Score=22.83 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=44.5
Q ss_pred EEccCcCCC-hhHhhhc-CCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHH-
Q 013271 97 YIGSGLLDH-PDLLQKH-VQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE- 173 (446)
Q Consensus 97 ~~G~g~~~~-~~~l~~~-~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~- 173 (446)
+.|...+.. .+.++.. ..+++++++|+..... .+.+.+.|++.|+++..+. -+.....+.+.+++
T Consensus 10 ~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s--~~~~~~~L~~~Gi~~~~~~----------i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 10 YNGNEPIPGAVEALDALRERGKPVVFLTNNSSRS--REEYAKKLKKLGIPVDEDE----------IITSGMAAAEYLKEH 77 (101)
T ss_dssp EETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS---HHHHHHHHHHTTTT--GGG----------EEEHHHHHHHHHHHH
T ss_pred EeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCC--HHHHHHHHHhcCcCCCcCE----------EEChHHHHHHHHHhc
Confidence 445666666 5555443 2479999999987543 2444555677885322111 12233444455555
Q ss_pred cCCCCcceEEEEcCccHHHHHH
Q 013271 174 SRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 174 ~~~dr~~~IIAiGGGsv~D~aK 195 (446)
.+.. -+..+|.....+..+
T Consensus 78 ~~~~---~v~vlG~~~l~~~l~ 96 (101)
T PF13344_consen 78 KGGK---KVYVLGSDGLREELR 96 (101)
T ss_dssp TTSS---EEEEES-HHHHHHHH
T ss_pred CCCC---EEEEEcCHHHHHHHH
Confidence 3333 688888887666554
No 298
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=23.46 E-value=7.7e+02 Score=24.82 Aligned_cols=49 Identities=18% Similarity=0.027 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHH-HHHHHHHhhcCCCeEEEE
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D-~aK~iAa~~~~g~p~i~I 210 (446)
.....++++++.+.+.+-+.+|+++|+|..+- +++... .....+.+|.|
T Consensus 172 ~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~-~~~~~~~vigV 221 (337)
T TIGR01274 172 VGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFA-ADGRKDRVIGI 221 (337)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHH-HhCCCCeEEEE
Confidence 44456667666543333345788888777643 333332 12233445444
No 299
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=23.44 E-value=1.6e+02 Score=31.06 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=27.3
Q ss_pred ceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 180 CTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 180 ~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
+.||++||+.=..++-.+--...-|.|=+.|-|-.
T Consensus 95 ~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVST~A 129 (403)
T PF06792_consen 95 DGVIGIGGSGGTALATAAMRALPIGFPKLMVSTMA 129 (403)
T ss_pred cEEEEecCCccHHHHHHHHHhCCCCCCeEEEEccC
Confidence 39999999988888865544456788999997763
No 300
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=23.26 E-value=4.3e+02 Score=22.11 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=43.6
Q ss_pred hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCC-CCcceEEE
Q 013271 106 PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRL-DRRCTFVA 184 (446)
Q Consensus 106 ~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~-dr~~~IIA 184 (446)
...+.+++..-.++.+|+.. ++.+.|.-. +.|..+.+++... ...+.+..+.+.+++.|. ..+|.||-
T Consensus 30 a~~isk~RP~~pIiavt~~~-------~~~r~l~l~---~GV~p~~~~~~~~-~~~~~~~~a~~~~~~~g~~~~gd~vVv 98 (117)
T PF02887_consen 30 ARLISKYRPKVPIIAVTPNE-------SVARQLSLY---WGVYPVLIEEFDK-DTEELIAEALEYAKERGLLKPGDKVVV 98 (117)
T ss_dssp HHHHHHT-TSSEEEEEESSH-------HHHHHGGGS---TTEEEEECSSHSH-SHHHHHHHHHHHHHHTTSS-TTSEEEE
T ss_pred HHHHHhhCCCCeEEEEcCcH-------HHHhhhhcc---cceEEEEeccccc-cHHHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 44566665556777887763 233334311 3455655554331 256788889999999987 66788888
Q ss_pred EcC
Q 013271 185 LGG 187 (446)
Q Consensus 185 iGG 187 (446)
++|
T Consensus 99 ~~g 101 (117)
T PF02887_consen 99 VAG 101 (117)
T ss_dssp EEE
T ss_pred EeC
Confidence 877
No 301
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.04 E-value=2.2e+02 Score=27.76 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhHhhcCCceEEEeecCCCCc-eeE-cCCCCHHHHHHHH
Q 013271 372 IVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGN-CVF-TGDYDRKALDDTL 440 (446)
Q Consensus 372 ~~~~i~~ll~~lGlP~~~~~~i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~-~~~-~~~~~~~~l~~~l 440 (446)
..+++.++-.+.||-+.--|.-+++++.++...-+++.+|++.+..=. -|. |.+ ..|.+...+.+.+
T Consensus 41 ~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L~NN--AG~~C~~Pa~d~~i~ave~~f 109 (289)
T KOG1209|consen 41 RLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLLYNN--AGQSCTFPALDATIAAVEQCF 109 (289)
T ss_pred ccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEEEcC--CCCCcccccccCCHHHHHhhh
Confidence 456677777788875532222456668888888888888999976544 577 777 4566666666654
No 302
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=23.00 E-value=5.8e+02 Score=23.20 Aligned_cols=85 Identities=8% Similarity=0.085 Sum_probs=46.0
Q ss_pred hhHhhhcCCCCEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceE
Q 013271 106 PDLLQKHVQGKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 182 (446)
Q Consensus 106 ~~~l~~~~~~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~I 182 (446)
.+++.+. +.+++.++.+..- .....+.+.+.+++.+ ...+. .+.. + ..+.+...+.+..+.+.+. +.++|
T Consensus 110 ~~~l~~~-g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~--~~~~~~~~~~~~~~l~~~~-~~~~i 182 (264)
T cd01537 110 GEHLAEK-GHRRIALLAGPLGSSTARERVAGFKDALKEAG-PIEIV-LVQE-G--DWDAEKGYQAAEELLTAHP-DPTAI 182 (264)
T ss_pred HHHHHHh-cCCcEEEEECCCCCCcHHHHHHHHHHHHHHcC-CcChh-hhcc-C--CCCHHHHHHHHHHHHhcCC-CCCEE
Confidence 3445444 4688888877533 2224566777777665 11211 1111 1 2345555556666555552 23389
Q ss_pred EEEcCccHHHHHHHH
Q 013271 183 VALGGGVIGDMCGYA 197 (446)
Q Consensus 183 IAiGGGsv~D~aK~i 197 (446)
++.+......+.+.+
T Consensus 183 ~~~~~~~a~~~~~~~ 197 (264)
T cd01537 183 FAANDDMALGALRAL 197 (264)
T ss_pred EEcCcHHHHHHHHHH
Confidence 988877666565554
No 303
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=22.99 E-value=7.8e+02 Score=24.71 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=57.0
Q ss_pred hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 106 PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 106 ~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
.++++.+ +.+++.+++|..-...-.+.+.+.+++.|..+.+....+.. ...-+.....+..+++.+.+ .||-.
T Consensus 118 ~~~~~~~-~wk~vaii~~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~~~---~~~~~d~~~~L~~ik~~~~~---~iil~ 190 (382)
T cd06380 118 VDLIEHY-GWRKVVYLYDSDRGLLRLQQLLDYLREKDNKWQVTARRVDN---VTDEEEFLRLLEDLDRRKEK---RIVLD 190 (382)
T ss_pred HHHHHhc-CCeEEEEEECCCcchHHHHHHHHHHhccCCceEEEEEEecC---CCcHHHHHHHHHHhhcccce---EEEEE
Confidence 4556554 57999999986643334566777777777111222222221 11235777888888888887 66643
Q ss_pred cCccHHHHHHHHHHhhcC---CCeEEEEcCC
Q 013271 186 GGGVIGDMCGYAAASYLR---GVSFIQIPTT 213 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~---g~p~i~IPTT 213 (446)
+..-|.+.++..+... +..++-|-|+
T Consensus 191 --~~~~~~~~i~~qa~~~gm~~~~y~~i~~~ 219 (382)
T cd06380 191 --CESERLNKILEQIVDVGKNRKGYHYILAN 219 (382)
T ss_pred --CCHHHHHHHHHHHHHhhhcccceEEEEcc
Confidence 4446777766554433 3445444444
No 304
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=22.49 E-value=6.3e+02 Score=23.46 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=55.7
Q ss_pred hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 106 PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 106 ~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
.++++.+ +.+++.++++..-+.. ..+.+.+.+.+.++ .+...... ..........++.+++.+.+ +||.
T Consensus 132 ~~~l~~~-~w~~v~~v~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~----~~~~~~~~~~l~~l~~~~~~---viv~ 201 (298)
T cd06269 132 VDLLKHF-GWTWVGLVYSDDDYGRRLLELLEEELEKNGI--CVAFVESI----PDGSEDIRRLLKELKSSTAR---VIVV 201 (298)
T ss_pred HHHHHHC-CCeEEEEEEecchhhHHHHHHHHHHHHHCCe--eEEEEEEc----CCCHHHHHHHHHHHHhcCCc---EEEE
Confidence 3455554 4688888888765443 67777777777663 33222111 11226777888888888776 8888
Q ss_pred EcCccHHHHHHHHHHhhcCCC--eEEEEcCC
Q 013271 185 LGGGVIGDMCGYAAASYLRGV--SFIQIPTT 213 (446)
Q Consensus 185 iGGGsv~D~aK~iAa~~~~g~--p~i~IPTT 213 (446)
.+.+ -|+..++..+...|+ .+.-|-++
T Consensus 202 ~~~~--~~~~~~l~~a~~~g~~~~~~~i~~~ 230 (298)
T cd06269 202 FSSE--EDALRLLEEAVELGMMTGYHWIITD 230 (298)
T ss_pred Eech--HHHHHHHHHHHHcCCCCCeEEEEEC
Confidence 8764 344444443444443 34444444
No 305
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=22.41 E-value=3e+02 Score=26.53 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=36.7
Q ss_pred EEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCC---CcHHHHHHHHHHHHHcCCC
Q 013271 120 VVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENY---KNMDTLMKVFDKAIESRLD 177 (446)
Q Consensus 120 iVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~---~t~~~v~~~~~~~~~~~~d 177 (446)
+++|.+|-.. ++..+.+...+.|++ +|.++.|-+|... --..-++++.+.+.+.+..
T Consensus 35 LlSdGGVHSh~~Hl~al~~~a~~~gv~-~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~g 96 (223)
T PF06415_consen 35 LLSDGGVHSHIDHLFALIKLAKKQGVK-KVYVHAFTDGRDTPPKSALKYLEELEEKLAEIGIG 96 (223)
T ss_dssp EESS-SSS--HHHHHHHHHHHHHTT-S-EEEEEEEE-SSSS-TTTHHHHHHHHHHHHHHHTCT
T ss_pred EecCCCccccHHHHHHHHHHHHHcCCC-EEEEEEecCCCCCCcchHHHHHHHHHHHHHhhCCc
Confidence 6788888664 677788888888863 4666666666542 2256788888888887664
No 306
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=22.19 E-value=3e+02 Score=27.02 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=13.6
Q ss_pred EEEEEECCCchhH-HHHHHHHHHhcCC
Q 013271 117 KVLVVTNNTVAPL-YLDKVTDALTRGN 142 (446)
Q Consensus 117 ~vliVtd~~v~~~-~~~~v~~~L~~~g 142 (446)
-+++|+|++...+ ..+++.+.-.+.|
T Consensus 158 ~vivVvDpS~~sl~taeri~~L~~elg 184 (255)
T COG3640 158 LVIVVVDPSYKSLRTAERIKELAEELG 184 (255)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhC
Confidence 3555556554444 4555555555555
No 307
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=22.12 E-value=6.8e+02 Score=23.69 Aligned_cols=80 Identities=11% Similarity=0.172 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceE-EEEcCccHHHHHHHHHHhhc----
Q 013271 128 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTF-VALGGGVIGDMCGYAAASYL---- 202 (446)
Q Consensus 128 ~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~I-IAiGGGsv~D~aK~iAa~~~---- 202 (446)
+...+++.+...+.+.++=+. +-+-+..|+.+.+...++.+.+.|+| ++ ||.=--+.-|+.........
T Consensus 104 ~~~~~~l~~~~~~~~~kvI~S---~H~f~~tp~~~~l~~~~~~~~~~gaD---ivKia~~a~~~~D~~~ll~~~~~~~~~ 177 (228)
T TIGR01093 104 DDAVKELINIAKKGGTKIIMS---YHDFQKTPSWEEIVERLEKALSYGAD---IVKIAVMANSKEDVLTLLEITNKVDEH 177 (228)
T ss_pred HHHHHHHHHHHHHCCCEEEEe---ccCCCCCCCHHHHHHHHHHHHHhCCC---EEEEEeccCCHHHHHHHHHHHHHHHhc
Confidence 334555555445555322122 22335567889999999999999999 66 77777788898887754422
Q ss_pred CCCeEEEEcCC
Q 013271 203 RGVSFIQIPTT 213 (446)
Q Consensus 203 ~g~p~i~IPTT 213 (446)
...|+|++.+.
T Consensus 178 ~~~p~i~~~MG 188 (228)
T TIGR01093 178 ADVPLITMSMG 188 (228)
T ss_pred CCCCEEEEeCC
Confidence 35788888755
No 308
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=22.10 E-value=6.1e+02 Score=24.12 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=58.4
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE-cCccHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL-GGGVIGDMC 194 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi-GGGsv~D~a 194 (446)
+.-++|++-+-..++++++...|.+.| +.+ +++..+|..- -.. --+.++|++|+| |+|-.-.+.
T Consensus 39 ~gkv~V~G~GkSG~Igkk~Aa~L~s~G--~~a--~fv~p~ea~h------gdl-----g~i~~~DvviaiS~SGeT~el~ 103 (202)
T COG0794 39 KGKVFVTGVGKSGLIGKKFAARLASTG--TPA--FFVGPAEALH------GDL-----GMITPGDVVIAISGSGETKELL 103 (202)
T ss_pred CCcEEEEcCChhHHHHHHHHHHHHccC--Cce--EEecCchhcc------CCc-----cCCCCCCEEEEEeCCCcHHHHH
Confidence 455777787767779999999999998 333 3444333211 011 113456799998 667777777
Q ss_pred HHHHHhhcCCCeEEEEcCCcCccccccccC
Q 013271 195 GYAAASYLRGVSFIQIPTTVMAQVDSSVGG 224 (446)
Q Consensus 195 K~iAa~~~~g~p~i~IPTTl~A~tds~v~~ 224 (446)
..+..+-..+.++|+|-.- -||+.+.
T Consensus 104 ~~~~~aK~~g~~liaiT~~----~~SsLak 129 (202)
T COG0794 104 NLAPKAKRLGAKLIAITSN----PDSSLAK 129 (202)
T ss_pred HHHHHHHHcCCcEEEEeCC----CCChHHH
Confidence 7666666789999999433 3555543
No 309
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=21.88 E-value=2.7e+02 Score=27.30 Aligned_cols=92 Identities=10% Similarity=0.185 Sum_probs=49.2
Q ss_pred hHhhhcC-CCCEEEEEECCCchh--HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEE
Q 013271 107 DLLQKHV-QGKKVLVVTNNTVAP--LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFV 183 (446)
Q Consensus 107 ~~l~~~~-~~k~vliVtd~~v~~--~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~II 183 (446)
+++++.. ..+++.++.|+.... ...+.+.+..++.|+ ++..+.++ +.+.+.+.++.+. .+.| +++
T Consensus 122 ~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~--~l~~~~v~------~~~~~~~~~~~l~-~~~d---a~~ 189 (294)
T PF04392_consen 122 ELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGI--ELVEIPVP------SSEDLEQALEALA-EKVD---ALY 189 (294)
T ss_dssp HHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT---EEEEEEES------SGGGHHHHHHHHC-TT-S---EEE
T ss_pred HHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCC--EEEEEecC------cHhHHHHHHHHhh-ccCC---EEE
Confidence 3444442 257888888877542 367788888888884 44434433 3455666666653 3344 777
Q ss_pred EEcCccHHHHHHHHH-HhhcCCCeEEEE
Q 013271 184 ALGGGVIGDMCGYAA-ASYLRGVSFIQI 210 (446)
Q Consensus 184 AiGGGsv~D~aK~iA-a~~~~g~p~i~I 210 (446)
-...+.+.+-...+. .....++|++..
T Consensus 190 ~~~~~~~~~~~~~i~~~~~~~~iPv~~~ 217 (294)
T PF04392_consen 190 LLPDNLVDSNFEAILQLANEAKIPVFGS 217 (294)
T ss_dssp E-S-HHHHHTHHHHHHHCCCTT--EEES
T ss_pred EECCcchHhHHHHHHHHHHhcCCCEEEC
Confidence 776666655444432 234577888764
No 310
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=21.86 E-value=2.2e+02 Score=29.04 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCCCCCC-CCCCHHHHHHHHHHhHhhcCCceEEEeecCCCCcee-EcC--------CCCHHHHHHHHHH
Q 013271 373 VKRVHNILQQAKLPTAPP-DTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCV-FTG--------DYDRKALDDTLYA 442 (446)
Q Consensus 373 ~~~i~~ll~~lGlP~~~~-~~i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~-~~~--------~~~~~~l~~~l~~ 442 (446)
.+.+.+.++.+|..+.-- +.=+.+++.+++...++. .++..+++.++.+|.-. +.. .++++++.++.++
T Consensus 195 ~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG~G~~~~e~~~~~Hg~~l~~ee~~~~k~~ 273 (332)
T PF00456_consen 195 SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKGKGVPFMEGTAKWHGSPLTEEEVEQAKKE 273 (332)
T ss_dssp HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TTTTSTTTTTSGGGTSS--HHHHHHHHHHH
T ss_pred chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEecCchhhcccchhhccCCcHHHHHHHHHH
Confidence 356788899999987432 445788999999988764 46888888888777744 321 4678888777665
Q ss_pred H
Q 013271 443 F 443 (446)
Q Consensus 443 ~ 443 (446)
+
T Consensus 274 l 274 (332)
T PF00456_consen 274 L 274 (332)
T ss_dssp T
T ss_pred c
Confidence 4
No 311
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.81 E-value=6.6e+02 Score=23.41 Aligned_cols=73 Identities=8% Similarity=0.102 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCe
Q 013271 127 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 206 (446)
Q Consensus 127 ~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p 206 (446)
+..+.+.+.+.+.+.| +.+.... . . . +.+.-.++.+.+.+.++| .||-.+.-.. +. +...-..++|
T Consensus 17 ~~~~~~~i~~~~~~~g--~~~~~~~-~-~-~--~~~~~~~~~~~l~~~~vd---giii~~~~~~-~~---~~~l~~~~ip 82 (268)
T cd06277 17 YSEIYRAIEEEAKKYG--YNLILKF-V-S-D--EDEEEFELPSFLEDGKVD---GIILLGGIST-EY---IKEIKELGIP 82 (268)
T ss_pred HHHHHHHHHHHHHHcC--CEEEEEe-C-C-C--ChHHHHHHHHHHHHCCCC---EEEEeCCCCh-HH---HHHHhhcCCC
Confidence 4446777888888888 4443222 2 1 1 223444566667778888 8887763321 11 2222346899
Q ss_pred EEEEcCC
Q 013271 207 FIQIPTT 213 (446)
Q Consensus 207 ~i~IPTT 213 (446)
+|.+=..
T Consensus 83 vV~~~~~ 89 (268)
T cd06277 83 FVLVDHY 89 (268)
T ss_pred EEEEccC
Confidence 9988544
No 312
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=21.67 E-value=6.6e+02 Score=26.01 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=54.7
Q ss_pred hhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCc
Q 013271 109 LQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGG 188 (446)
Q Consensus 109 l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGG 188 (446)
+..+ ..+++++++.+..... .+++.+.+..... .....+.+...+.-.++.+.++++.+ .+....+++|=+=||
T Consensus 7 I~~~-~Pd~V~f~~S~~s~~~-~~~i~~~l~~~~~--~~~~~~~d~dD~~~~y~~l~~~l~~~--~~~~~~~v~vDiTGG 80 (379)
T PF09670_consen 7 IREL-RPDRVVFFCSEESKPK-AEQIRQQLGLSPD--QEEIVIVDPDDPLECYRKLREVLEKL--RDFPGHEVAVDITGG 80 (379)
T ss_pred HHHc-CCCEEEEEecccchhh-HHHHHHHHhcccC--CceEeeCCCCCHHHHHHHHHHHHHHH--hcCCCCeEEEECCCC
Confidence 3444 3577777766654443 6777777766542 11222222222223345556666555 233344688888666
Q ss_pred c-HHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 189 V-IGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 189 s-v~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+ +|-++-++|+. ..++++.-|-+.
T Consensus 81 TK~Msaglalaa~-~~~~~~~YV~~~ 105 (379)
T PF09670_consen 81 TKSMSAGLALAAI-ELGVELSYVDGE 105 (379)
T ss_pred HHHHHHHHHHHHH-HcCCcEEEEecc
Confidence 5 66666666654 448888877654
No 313
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=21.63 E-value=3.6e+02 Score=23.63 Aligned_cols=56 Identities=23% Similarity=0.407 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCeeEEEE-EeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH--HHHHHH
Q 013271 131 LDKVTDALTRGNPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG--DMCGYA 197 (446)
Q Consensus 131 ~~~v~~~L~~~gi~~~v~~~-i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~--D~aK~i 197 (446)
..-+.+.|++.|. ++... ++++ +.+.+.+.++.+.+ ++| +||.-||=+.. |...-+
T Consensus 29 ~~~l~~~l~~~G~--~v~~~~~v~D-----d~~~i~~~l~~~~~-~~D---liIttGG~g~g~~D~t~~a 87 (144)
T TIGR00177 29 GPLLAALLEEAGF--NVSRLGIVPD-----DPEEIREILRKAVD-EAD---VVLTTGGTGVGPRDVTPEA 87 (144)
T ss_pred HHHHHHHHHHCCC--eEEEEeecCC-----CHHHHHHHHHHHHh-CCC---EEEECCCCCCCCCccHHHH
Confidence 3445666777784 44332 3332 34666666666543 566 99998876665 766544
No 314
>PRK13566 anthranilate synthase; Provisional
Probab=21.53 E-value=3.9e+02 Score=30.43 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=46.1
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHH-
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGD- 192 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D- 192 (446)
+++++||-... .+...+.+.|++.|. ++..+ +... +.+.+ ....+| .||-.|| |+.-|
T Consensus 526 g~~IlvID~~d---sf~~~l~~~Lr~~G~--~v~vv--~~~~---~~~~~-------~~~~~D---gVVLsgGpgsp~d~ 585 (720)
T PRK13566 526 GKRVLLVDHED---SFVHTLANYFRQTGA--EVTTV--RYGF---AEEML-------DRVNPD---LVVLSPGPGRPSDF 585 (720)
T ss_pred CCEEEEEECCC---chHHHHHHHHHHCCC--EEEEE--ECCC---ChhHh-------hhcCCC---EEEECCCCCChhhC
Confidence 45776664442 346677778888884 44333 3222 11211 123456 6665544 66655
Q ss_pred -HHHHHHHhhcCCCeEEEEcCCc
Q 013271 193 -MCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 193 -~aK~iAa~~~~g~p~i~IPTTl 214 (446)
+...+...+.+++|+..|+-.+
T Consensus 586 ~~~~lI~~a~~~~iPILGIClG~ 608 (720)
T PRK13566 586 DCKATIDAALARNLPIFGVCLGL 608 (720)
T ss_pred CcHHHHHHHHHCCCcEEEEehhH
Confidence 4455555567899999998664
No 315
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.47 E-value=6.7e+02 Score=23.38 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEE
Q 013271 130 YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQ 209 (446)
Q Consensus 130 ~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~ 209 (446)
+.+.+.+.+++.| +.+. ++.... .-+.+...+.++.+...++| .||..+...- .....++..-..++|+|.
T Consensus 17 ~~~g~~~~~~~~g--~~~~--~~~~~~-~~~~~~~~~~i~~l~~~~vd---gvii~~~~~~-~~~~~l~~~~~~~ipvV~ 87 (273)
T cd06310 17 VKAGAEAAAKELG--VKVT--FQGPAS-ETDVAGQVNLLENAIARGPD---AILLAPTDAK-ALVPPLKEAKDAGIPVVL 87 (273)
T ss_pred HHHHHHHHHHHcC--CEEE--EecCcc-CCCHHHHHHHHHHHHHhCCC---EEEEcCCChh-hhHHHHHHHHHCCCCEEE
Confidence 5677777888888 4433 332211 11445566777777778888 8887664321 111222223357899999
Q ss_pred EcC
Q 013271 210 IPT 212 (446)
Q Consensus 210 IPT 212 (446)
+=+
T Consensus 88 ~~~ 90 (273)
T cd06310 88 IDS 90 (273)
T ss_pred ecC
Confidence 843
No 316
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=21.43 E-value=1.3e+02 Score=28.03 Aligned_cols=81 Identities=25% Similarity=0.297 Sum_probs=45.8
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCC-CCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPD-GENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~-ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
.++.+|+|-|=-=...-.+.+.+.|...|.+ .+..+++-+ -+. ..++ +-.-+.-+.+. +.++||.| +|
T Consensus 92 ~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~-sv~i~tLldK~~~----r~~~-i~~DyvGf~vP-d~FVvGyG----lD 160 (178)
T COG0634 92 KGRDVLIVEDIIDSGLTLSKVRDLLKERGAK-SVRIATLLDKPER----RKVD-IEADYVGFEVP-DEFVVGYG----LD 160 (178)
T ss_pred CCCeEEEEecccccChhHHHHHHHHHhCCCC-eEEEEEEeeCccc----ccCC-CCcceEeeecC-CceEEEcc----cc
Confidence 5788999866322223678888888888763 455555532 111 1111 11111222221 34889887 78
Q ss_pred HHHHHHHhhcCCCeEEEE
Q 013271 193 MCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 193 ~aK~iAa~~~~g~p~i~I 210 (446)
.+. +.|++|+|-+
T Consensus 161 y~~-----~yRnLPyIg~ 173 (178)
T COG0634 161 YAE-----RYRNLPYIGV 173 (178)
T ss_pred hhh-----hhcCCCeeEE
Confidence 775 3589999865
No 317
>PRK06490 glutamine amidotransferase; Provisional
Probab=21.38 E-value=5.1e+02 Score=24.93 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=45.5
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCcc-H---
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV-I--- 190 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGs-v--- 190 (446)
..|++||-+..... ...+.+.|.+.|. ++.++....+++.|. .+ .++| .+|-.||-. +
T Consensus 7 ~~~vlvi~h~~~~~--~g~l~~~l~~~g~--~~~v~~~~~~~~~p~--~l---------~~~d---gvii~Ggp~~~~d~ 68 (239)
T PRK06490 7 KRPVLIVLHQERST--PGRVGQLLQERGY--PLDIRRPRLGDPLPD--TL---------EDHA---GAVIFGGPMSANDP 68 (239)
T ss_pred CceEEEEecCCCCC--ChHHHHHHHHCCC--ceEEEeccCCCCCCC--cc---------cccC---EEEEECCCCCCCCC
Confidence 46888887765443 3445666777774 444333333333331 11 1245 666666543 2
Q ss_pred ----HHHHHHHHHhhcCCCeEEEEcCC
Q 013271 191 ----GDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 191 ----~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
.+..+++...+..++|++.|+..
T Consensus 69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G 95 (239)
T PRK06490 69 DDFIRREIDWISVPLKENKPFLGICLG 95 (239)
T ss_pred chHHHHHHHHHHHHHHCCCCEEEECHh
Confidence 23345555456788999999865
No 318
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=21.14 E-value=5.4e+02 Score=24.12 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEE
Q 013271 129 LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFI 208 (446)
Q Consensus 129 ~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i 208 (446)
.+.+.+.+.+++.| +++ .++... . +.+.-.+.++.+...++| .||-.+...- .....+......++|+|
T Consensus 16 ~~~~~~~~~a~~~g--~~~--~~~~~~-~--~~~~~~~~i~~l~~~~vd---giIi~~~~~~-~~~~~i~~~~~~~iPvV 84 (273)
T cd06309 16 AETKSIKDAAEKRG--FDL--KFADAQ-Q--KQENQISAIRSFIAQGVD---VIILAPVVET-GWDPVLKEAKAAGIPVI 84 (273)
T ss_pred HHHHHHHHHHHhcC--CEE--EEeCCC-C--CHHHHHHHHHHHHHcCCC---EEEEcCCccc-cchHHHHHHHHCCCCEE
Confidence 36778888888888 443 333321 1 445556777778888888 8876654321 11122322345789999
Q ss_pred EEcCC
Q 013271 209 QIPTT 213 (446)
Q Consensus 209 ~IPTT 213 (446)
.+=+.
T Consensus 85 ~~~~~ 89 (273)
T cd06309 85 LVDRG 89 (273)
T ss_pred EEecC
Confidence 98754
No 319
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=21.12 E-value=6.7e+02 Score=23.24 Aligned_cols=75 Identities=13% Similarity=-0.001 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCcc-HHHHHHHHHHhhcCCC
Q 013271 127 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV-IGDMCGYAAASYLRGV 205 (446)
Q Consensus 127 ~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGs-v~D~aK~iAa~~~~g~ 205 (446)
+..+.+.+.+.+++.| +.+.....+ +. ..+...++.+.+...++| .||-.++-. ..+.... .-..++
T Consensus 14 ~~~~~~gi~~~~~~~g--~~~~~~~~~--~~--~~~~~~~~~~~l~~~~vd---giii~~~~~~~~~~~~~---~~~~~i 81 (270)
T cd01545 14 VSEIQLGALDACRDTG--YQLVIEPCD--SG--SPDLAERVRALLQRSRVD---GVILTPPLSDNPELLDL---LDEAGV 81 (270)
T ss_pred HHHHHHHHHHHHHhCC--CeEEEEeCC--CC--chHHHHHHHHHHHHCCCC---EEEEeCCCCCccHHHHH---HHhcCC
Confidence 4446777888888888 444332222 11 123667777777788898 888876532 2232222 224789
Q ss_pred eEEEEcCC
Q 013271 206 SFIQIPTT 213 (446)
Q Consensus 206 p~i~IPTT 213 (446)
|++.+-..
T Consensus 82 pvv~i~~~ 89 (270)
T cd01545 82 PYVRIAPG 89 (270)
T ss_pred CEEEEecC
Confidence 99998655
No 320
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=21.06 E-value=7.6e+02 Score=25.35 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=48.1
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCC------C-C---CC------------Cc----HHHHHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPD------G-E---NY------------KN----MDTLMKVFD 169 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~------g-e---~~------------~t----~~~v~~~~~ 169 (446)
-|++|+++.+....+...+.+.|.+.+. +++++-..+ | + +. +. ...+.++.+
T Consensus 6 ~ki~i~aGgtsGhi~paal~~~l~~~~~--~~~~~g~gg~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~~~ 83 (385)
T TIGR00215 6 PTIALVAGEASGDILGAGLRQQLKEHYP--NARFIGVAGPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEVVQ 83 (385)
T ss_pred CeEEEEeCCccHHHHHHHHHHHHHhcCC--CcEEEEEccHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777666665577777776553 333333321 0 0 00 00 012334446
Q ss_pred HHHHcCCCCcceEEEEcCccHHH--HHHHHHHhhcCCCeEEEE
Q 013271 170 KAIESRLDRRCTFVALGGGVIGD--MCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D--~aK~iAa~~~~g~p~i~I 210 (446)
.++++++| +||++|| ...- +++.+ ...++|++..
T Consensus 84 ~l~~~kPd---~vi~~g~-~~~~~~~a~aa---~~~gip~v~~ 119 (385)
T TIGR00215 84 LAKQAKPD---LLVGIDA-PDFNLTKELKK---KDPGIKIIYY 119 (385)
T ss_pred HHHhcCCC---EEEEeCC-CCccHHHHHHH---hhCCCCEEEE
Confidence 67788888 9999995 4445 43332 3457887764
No 321
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=21.05 E-value=3e+02 Score=24.59 Aligned_cols=83 Identities=13% Similarity=0.184 Sum_probs=49.2
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
|+.|=+|..-.+ +.+.+.++|++.| ++|.. +...++..-.+...++.+...+..++| .|+--|-|.=+-++
T Consensus 2 kI~IgsDh~G~~-lK~~i~~~L~~~G--~eV~D--~G~~~~~dYpd~a~~va~~V~~~e~~~--GIliCGtGiG~sia-- 72 (141)
T TIGR01118 2 AIIIGSDLAGKR-LKDVIKNFLVDNG--FEVID--VTEGDGQDFVDVTLAVASEVQKDEQNL--GIVIDAYGAGSFMV-- 72 (141)
T ss_pred EEEEEeCcchHH-HHHHHHHHHHHCC--CEEEE--cCCCCCCCcHHHHHHHHHHHHcCCCce--EEEEcCCCHhHhhh--
Confidence 466677776444 5788999999998 55533 332233223466777888888877877 45555555444333
Q ss_pred HHHhhcCCCeEEEE
Q 013271 197 AAASYLRGVSFIQI 210 (446)
Q Consensus 197 iAa~~~~g~p~i~I 210 (446)
+--.+|+.-..+
T Consensus 73 --ANK~~GIRAA~~ 84 (141)
T TIGR01118 73 --ATKIKGMIAAEV 84 (141)
T ss_pred --hhcCCCeEEEEE
Confidence 112356655444
No 322
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.04 E-value=7.5e+02 Score=24.22 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=51.4
Q ss_pred chhHHHHHHHHHHhcCCCCeeEEEEEe-CCCCC-CCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcC
Q 013271 126 VAPLYLDKVTDALTRGNPNVSVENVIL-PDGEN-YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 203 (446)
Q Consensus 126 v~~~~~~~v~~~L~~~gi~~~v~~~i~-~~ge~-~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~ 203 (446)
+...-.++..+.+.+.|++ - .++. ..||- .=|.++-.++++.+.+.-.+|-.+|+++|+.++-|+...+-.....
T Consensus 19 iD~~~l~~~i~~l~~~Gv~--g-i~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~ 95 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTD--G-LVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKA 95 (292)
T ss_pred cCHHHHHHHHHHHHHcCCC--E-EEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHc
Confidence 3333456666667777742 1 1222 33553 4566777777777776644455599999999998888776555556
Q ss_pred CCeEEEE
Q 013271 204 GVSFIQI 210 (446)
Q Consensus 204 g~p~i~I 210 (446)
|..-+.+
T Consensus 96 G~d~v~~ 102 (292)
T PRK03170 96 GADGALV 102 (292)
T ss_pred CCCEEEE
Confidence 7665555
No 323
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.91 E-value=7e+02 Score=23.38 Aligned_cols=72 Identities=3% Similarity=0.005 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCcc--HHHHHHHHHHhhcCCCe
Q 013271 129 LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV--IGDMCGYAAASYLRGVS 206 (446)
Q Consensus 129 ~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGs--v~D~aK~iAa~~~~g~p 206 (446)
...+.+.+.+++.| +++. ++.. +.+.+.-.+.++.+...++| .||-.+... +.+..+. ....++|
T Consensus 16 ~~~~~i~~~~~~~g--~~v~--~~~~---~~~~~~~~~~i~~~~~~~~D---giii~~~~~~~~~~~i~~---~~~~~iP 82 (282)
T cd06318 16 ALTEAAKAHAKALG--YELI--STDA---QGDLTKQIADVEDLLTRGVN---VLIINPVDPEGLVPAVAA---AKAAGVP 82 (282)
T ss_pred HHHHHHHHHHHHcC--CEEE--EEcC---CCCHHHHHHHHHHHHHcCCC---EEEEecCCccchHHHHHH---HHHCCCC
Confidence 35677778888888 4443 2222 22445556777888888998 776544322 1233232 2357999
Q ss_pred EEEEcCC
Q 013271 207 FIQIPTT 213 (446)
Q Consensus 207 ~i~IPTT 213 (446)
+|.+=+.
T Consensus 83 vV~~~~~ 89 (282)
T cd06318 83 VVVVDSS 89 (282)
T ss_pred EEEecCC
Confidence 9999654
No 324
>PHA02780 hypothetical protein; Provisional
Probab=20.85 E-value=1.7e+02 Score=22.34 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCC---CCHHHHHHHHHH
Q 013271 368 IDDSIVKRVHNILQQAKLPTAPPDT---MTVEMFKSIMAV 404 (446)
Q Consensus 368 ~~~~~~~~i~~ll~~lGlP~~~~~~---i~~e~~~~~l~~ 404 (446)
++++.+-++.+++..+|..+.+.+. +..+-+..+|.+
T Consensus 32 ided~i~ellniltelgcdvdfde~fsdiaddilesl~eq 71 (73)
T PHA02780 32 IDEDEIMELLNILTELGCDVDFDENFSDIADDILESLIEQ 71 (73)
T ss_pred echHHHHHHHHHHHHhCCCcccccchhHHHHHHHHHHHHc
Confidence 4678899999999999999988654 333334444443
No 325
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=20.64 E-value=8.3e+02 Score=25.54 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=49.1
Q ss_pred hHhhhcCCCCEEEEEECCCchh-HHHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHH-cCCCCcceEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFV 183 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~-~~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~-~~~dr~~~II 183 (446)
++++.+ +.+++.+|.+..-+. ...+.+.+.+++.|. +.+.. ..++ ..++.......+.++++ .+++ +||
T Consensus 165 ~~i~~~-~w~~Vaii~~~~~yg~~~~~~~~~~~~~~g~-~~v~~~~~i~---~~~~~~d~~~~l~~ik~~~~~~---vIv 236 (463)
T cd06376 165 DIVKAL-GWNYVSTLASEGNYGESGVEAFTQISREAGG-VCIAQSIKIP---REPRPGEFDKIIKRLLETPNAR---AVI 236 (463)
T ss_pred HHHHHc-CCeEEEEEEeCChHHHHHHHHHHHHHHHcCC-ceEEEEEecC---CCCCHHHHHHHHHHHhccCCCe---EEE
Confidence 344444 478888887544343 367777777777641 12211 1121 23445667777877765 5776 777
Q ss_pred EEcCccHHHHHHHHHHhhc
Q 013271 184 ALGGGVIGDMCGYAAASYL 202 (446)
Q Consensus 184 AiGGGsv~D~aK~iAa~~~ 202 (446)
..| ..-|+..++-.+..
T Consensus 237 l~~--~~~~~~~ll~~a~~ 253 (463)
T cd06376 237 IFA--NEDDIRRVLEAAKR 253 (463)
T ss_pred Eec--ChHHHHHHHHHHHh
Confidence 655 45566666544433
No 326
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=20.47 E-value=6.4e+02 Score=26.01 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 164 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 164 v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
..++++++.+. + +-++|.+|||..+--.-...-.....+++|-|-+.
T Consensus 165 ~lEileq~~~~-~--d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~ 211 (347)
T COG1171 165 ALEILEQLPDL-P--DAVFVPVGGGGLISGIATALKALSPEIKVIGVEPE 211 (347)
T ss_pred HHHHHHhcccc-C--CEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeC
Confidence 34455444332 2 35899999998875432222234556778777655
No 327
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=20.39 E-value=6.7e+02 Score=26.29 Aligned_cols=49 Identities=16% Similarity=0.067 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 163 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 163 ~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+.+++.+.+++.++| .++||+-.-.--+....+..+...++++..+|..
T Consensus 179 ~~~dl~~~i~~~~vd--~ViIA~p~~~~~~~~~ll~~~~~~gv~V~vvP~~ 227 (451)
T TIGR03023 179 KLDDLEELIREGEVD--EVYIALPLAAEDRILELLDALEDLTVDVRLVPDL 227 (451)
T ss_pred CHHHHHHHHHhcCCC--EEEEeeCcccHHHHHHHHHHHHhcCCEEEEeCch
Confidence 455666666778887 4889987766555666665556679999999976
No 328
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=20.20 E-value=6.4e+02 Score=24.50 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCCcceEEEEc-CccHHHHHHHHHHhhcCCCeEEEEc
Q 013271 165 MKVFDKAIESRLDRRCTFVALG-GGVIGDMCGYAAASYLRGVSFIQIP 211 (446)
Q Consensus 165 ~~~~~~~~~~~~dr~~~IIAiG-GGsv~D~aK~iAa~~~~g~p~i~IP 211 (446)
+...+.+...+.+.+|++|+|- +|..-++.+.+..+-.+|.+.|.|-
T Consensus 105 ~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It 152 (257)
T cd05007 105 EAGAADLQAINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIA 152 (257)
T ss_pred HHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEE
Confidence 3345556667777788887774 5677777776666667899988884
Done!