Query 013271
Match_columns 446
No_of_seqs 209 out of 1709
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okf_A 3-dehydroquinate syntha 100.0 2.4E-76 8.1E-81 604.6 37.2 360 81-445 29-389 (390)
2 3qbe_A 3-dehydroquinate syntha 100.0 3.8E-73 1.3E-77 577.7 36.6 354 82-445 13-367 (368)
3 2gru_A 2-deoxy-scyllo-inosose 100.0 2.9E-70 9.8E-75 558.7 26.9 354 82-441 1-360 (368)
4 3clh_A 3-dehydroquinate syntha 100.0 2.5E-68 8.7E-73 539.6 24.7 341 82-443 1-342 (343)
5 1xah_A Sadhqs, 3-dehydroquinat 100.0 2.7E-67 9.1E-72 534.2 24.8 345 85-445 3-351 (354)
6 1ujn_A Dehydroquinate synthase 100.0 1.2E-66 4.3E-71 528.1 25.1 335 82-445 1-339 (348)
7 1sg6_A Pentafunctional AROM po 100.0 2.8E-65 9.6E-70 526.1 30.5 353 81-441 3-392 (393)
8 3bfj_A 1,3-propanediol oxidore 100.0 3.4E-47 1.2E-51 390.6 29.5 327 84-442 5-385 (387)
9 1rrm_A Lactaldehyde reductase; 100.0 5.7E-47 2E-51 388.8 28.1 323 92-443 8-382 (386)
10 3ce9_A Glycerol dehydrogenase; 100.0 2.8E-47 9.7E-52 386.8 17.0 314 92-442 11-346 (354)
11 1jq5_A Glycerol dehydrogenase; 100.0 1.2E-44 4E-49 369.6 29.7 316 92-442 9-356 (370)
12 1vlj_A NADH-dependent butanol 100.0 1.7E-44 5.7E-49 373.1 31.0 333 81-443 12-405 (407)
13 3ox4_A Alcohol dehydrogenase 2 100.0 1.3E-44 4.4E-49 371.1 27.0 329 82-442 1-381 (383)
14 1oj7_A Hypothetical oxidoreduc 100.0 3.2E-44 1.1E-48 371.1 27.6 326 81-442 21-406 (408)
15 1o2d_A Alcohol dehydrogenase, 100.0 1.9E-44 6.6E-49 368.4 21.4 312 92-443 18-368 (371)
16 3jzd_A Iron-containing alcohol 100.0 2.4E-43 8.3E-48 358.3 26.2 323 81-442 4-350 (358)
17 3hl0_A Maleylacetate reductase 100.0 7.1E-43 2.4E-47 354.4 25.0 319 82-442 3-345 (353)
18 3uhj_A Probable glycerol dehyd 100.0 4E-42 1.4E-46 352.7 29.6 320 85-441 26-377 (387)
19 1ta9_A Glycerol dehydrogenase; 100.0 2.1E-42 7.3E-47 361.0 25.4 317 92-442 68-416 (450)
20 1kq3_A Glycerol dehydrogenase; 100.0 1.1E-42 3.8E-47 355.9 22.1 312 92-441 19-363 (376)
21 3iv7_A Alcohol dehydrogenase I 100.0 2.9E-41 9.9E-46 343.7 22.9 311 92-442 13-348 (364)
22 3rf7_A Iron-containing alcohol 100.0 2.1E-40 7.1E-45 338.4 22.1 317 92-442 27-374 (375)
23 3trh_A Phosphoribosylaminoimid 96.0 0.038 1.3E-06 49.3 10.0 87 116-213 7-93 (169)
24 3oow_A Phosphoribosylaminoimid 96.0 0.048 1.6E-06 48.5 10.3 87 116-213 6-92 (166)
25 3lp6_A Phosphoribosylaminoimid 95.8 0.047 1.6E-06 48.9 9.6 88 115-213 7-94 (174)
26 1u11_A PURE (N5-carboxyaminoim 95.8 0.025 8.6E-07 51.0 7.8 87 116-213 22-108 (182)
27 3ors_A N5-carboxyaminoimidazol 95.8 0.043 1.5E-06 48.7 9.1 87 116-213 4-90 (163)
28 3kuu_A Phosphoribosylaminoimid 95.6 0.039 1.3E-06 49.5 8.4 87 116-213 13-99 (174)
29 1xmp_A PURE, phosphoribosylami 95.5 0.051 1.7E-06 48.5 8.6 87 116-213 12-98 (170)
30 3rg8_A Phosphoribosylaminoimid 95.5 0.099 3.4E-06 46.3 10.4 87 116-213 3-90 (159)
31 1o4v_A Phosphoribosylaminoimid 95.4 0.073 2.5E-06 48.1 9.6 88 115-213 13-100 (183)
32 4grd_A N5-CAIR mutase, phospho 95.4 0.075 2.6E-06 47.5 9.4 87 116-213 13-99 (173)
33 4b4k_A N5-carboxyaminoimidazol 94.6 0.16 5.4E-06 45.7 9.1 86 117-213 24-109 (181)
34 2h31_A Multifunctional protein 94.0 0.24 8.2E-06 50.6 10.3 87 116-213 266-353 (425)
35 2bon_A Lipid kinase; DAG kinas 93.5 0.34 1.2E-05 47.6 10.3 88 115-213 29-119 (332)
36 2ywx_A Phosphoribosylaminoimid 92.7 0.17 5.9E-06 44.6 5.9 81 118-212 2-82 (157)
37 2qv7_A Diacylglycerol kinase D 91.8 0.74 2.5E-05 45.2 10.1 87 115-213 24-115 (337)
38 3s40_A Diacylglycerol kinase; 90.8 0.63 2.2E-05 45.1 8.3 86 115-213 8-98 (304)
39 2i2c_A Probable inorganic poly 88.6 1 3.4E-05 43.0 7.6 67 117-213 2-70 (272)
40 1u0t_A Inorganic polyphosphate 86.9 2.4 8.1E-05 41.1 9.3 89 115-213 4-108 (307)
41 2an1_A Putative kinase; struct 86.6 2.4 8.1E-05 40.6 9.0 82 116-212 6-95 (292)
42 2pju_A Propionate catabolism o 83.7 5.3 0.00018 37.1 9.6 75 114-211 105-179 (225)
43 2q5c_A NTRC family transcripti 83.6 4.5 0.00015 36.6 8.9 77 114-213 93-169 (196)
44 1pfk_A Phosphofructokinase; tr 82.2 2.8 9.7E-05 41.1 7.4 50 159-214 78-127 (320)
45 3hno_A Pyrophosphate-dependent 80.4 2.4 8.3E-05 43.2 6.4 53 159-214 88-143 (419)
46 2pln_A HP1043, response regula 79.8 10 0.00036 30.5 9.2 76 114-211 17-93 (137)
47 1zxx_A 6-phosphofructokinase; 77.3 3.5 0.00012 40.4 6.3 50 159-214 77-126 (319)
48 4a3s_A 6-phosphofructokinase; 75.0 3.9 0.00013 40.1 5.9 50 159-214 77-126 (319)
49 2f48_A Diphosphate--fructose-6 72.5 5.6 0.00019 41.9 6.7 53 159-214 150-205 (555)
50 1z0s_A Probable inorganic poly 69.5 7.6 0.00026 37.3 6.3 69 117-213 31-100 (278)
51 3afo_A NADH kinase POS5; alpha 64.0 19 0.00067 36.1 8.4 84 115-213 41-148 (388)
52 3opy_A 6-phosphofructo-1-kinas 62.9 11 0.00036 42.4 6.6 51 161-214 674-728 (989)
53 3o8l_A 6-phosphofructokinase, 60.1 9.9 0.00034 41.6 5.7 60 161-223 475-541 (762)
54 4eyg_A Twin-arginine transloca 58.5 36 0.0012 32.3 9.0 93 107-211 132-230 (368)
55 3pfn_A NAD kinase; structural 57.6 49 0.0017 32.9 9.9 87 114-213 37-141 (365)
56 2hig_A 6-phospho-1-fructokinas 56.9 21 0.00071 37.0 7.2 57 164-223 178-240 (487)
57 2ek0_A Stage V sporulation pro 56.0 13 0.00044 29.5 4.2 49 162-213 14-66 (90)
58 4evq_A Putative ABC transporte 55.9 37 0.0013 32.3 8.6 91 107-209 144-237 (375)
59 3opy_A 6-phosphofructo-1-kinas 55.8 23 0.0008 39.6 7.8 61 160-223 289-372 (989)
60 2ab0_A YAJL; DJ-1/THIJ superfa 55.2 69 0.0024 28.4 9.8 87 116-214 3-109 (205)
61 3o8o_A 6-phosphofructokinase s 54.0 19 0.00065 39.5 6.7 50 162-214 470-523 (787)
62 3i42_A Response regulator rece 53.5 72 0.0025 24.7 8.8 78 116-212 4-85 (127)
63 3hbm_A UDP-sugar hydrolase; PS 53.3 34 0.0012 32.5 7.8 27 180-213 227-253 (282)
64 2hqr_A Putative transcriptiona 53.3 37 0.0013 29.8 7.6 74 117-211 2-75 (223)
65 4gpa_A Glutamate receptor 4; P 53.2 94 0.0032 29.4 11.1 84 106-201 122-205 (389)
66 2e4u_A Metabotropic glutamate 53.0 1.1E+02 0.0039 31.2 12.4 96 107-212 179-276 (555)
67 3g1w_A Sugar ABC transporter; 53.0 71 0.0024 29.3 9.9 87 115-213 4-95 (305)
68 3o8l_A 6-phosphofructokinase, 52.6 28 0.00097 38.0 7.8 62 159-223 93-177 (762)
69 1xmx_A Hypothetical protein VC 51.8 70 0.0024 31.7 10.1 94 114-213 27-121 (385)
70 3opy_B 6-phosphofructo-1-kinas 51.5 25 0.00085 39.3 7.1 49 163-214 650-702 (941)
71 3sm9_A Mglur3, metabotropic gl 51.2 1E+02 0.0034 31.1 11.4 96 107-213 178-276 (479)
72 1pea_A Amidase operon; gene re 51.1 1.7E+02 0.0058 27.8 12.9 82 107-197 133-217 (385)
73 3h6g_A Glutamate receptor, ion 51.0 45 0.0015 32.2 8.5 85 107-204 131-215 (395)
74 3o8o_B 6-phosphofructokinase s 50.4 12 0.00039 41.1 4.2 50 162-214 471-524 (766)
75 3ks9_A Mglur1, metabotropic gl 49.5 1.7E+02 0.0057 29.6 12.9 73 107-188 190-266 (496)
76 3o8o_B 6-phosphofructokinase s 49.4 37 0.0013 37.2 8.0 61 160-223 83-166 (766)
77 2qh8_A Uncharacterized protein 47.3 1.5E+02 0.005 27.4 11.2 84 115-211 8-97 (302)
78 3jy6_A Transcriptional regulat 46.6 1.6E+02 0.0056 26.4 12.4 85 115-213 7-94 (276)
79 3lop_A Substrate binding perip 46.6 69 0.0024 30.3 8.9 90 107-208 134-226 (364)
80 3grc_A Sensor protein, kinase; 46.4 1E+02 0.0036 24.2 8.8 79 115-212 6-88 (140)
81 3hsy_A Glutamate receptor 2; l 45.9 53 0.0018 31.6 8.0 91 106-204 113-203 (376)
82 3i45_A Twin-arginine transloca 45.6 48 0.0017 31.8 7.7 82 107-201 135-220 (387)
83 3f6p_A Transcriptional regulat 44.9 96 0.0033 23.9 8.2 74 116-210 3-79 (120)
84 3l4e_A Uncharacterized peptida 44.7 86 0.0029 28.2 8.7 83 114-211 26-120 (206)
85 3hv2_A Response regulator/HD d 43.5 1.2E+02 0.0043 24.3 9.0 76 115-210 14-92 (153)
86 3h5l_A Putative branched-chain 43.2 81 0.0028 30.6 9.0 81 114-205 163-245 (419)
87 2b99_A Riboflavin synthase; lu 43.2 49 0.0017 28.8 6.4 88 117-213 4-100 (156)
88 2pjk_A 178AA long hypothetical 42.3 61 0.0021 28.5 7.1 61 126-196 37-101 (178)
89 3egc_A Putative ribose operon 42.1 1.6E+02 0.0055 26.6 10.5 87 115-214 8-97 (291)
90 3snr_A Extracellular ligand-bi 42.0 76 0.0026 29.6 8.3 90 107-208 128-220 (362)
91 2wte_A CSA3; antiviral protein 41.7 70 0.0024 29.7 7.7 81 114-201 33-117 (244)
92 3lkb_A Probable branched-chain 41.3 88 0.003 29.9 8.8 92 107-209 135-229 (392)
93 4gmk_A Ribose-5-phosphate isom 41.0 36 0.0012 31.6 5.5 55 159-214 2-58 (228)
94 3l49_A ABC sugar (ribose) tran 39.9 2.1E+02 0.0071 25.7 12.4 88 115-213 5-95 (291)
95 1c2y_A Protein (lumazine synth 39.3 1.2E+02 0.0041 26.3 8.3 91 115-213 13-117 (156)
96 3opy_B 6-phosphofructo-1-kinas 39.2 46 0.0016 37.2 6.8 61 160-223 261-344 (941)
97 3n0w_A ABC branched chain amin 38.8 65 0.0022 30.8 7.3 87 107-205 135-222 (379)
98 3gbv_A Putative LACI-family tr 38.8 1.4E+02 0.0049 26.9 9.6 76 128-213 25-103 (304)
99 3saj_A Glutamate receptor 1; r 38.3 41 0.0014 32.5 5.8 87 106-204 120-206 (384)
100 3lkv_A Uncharacterized conserv 38.3 81 0.0028 29.5 7.8 75 128-213 23-99 (302)
101 4f11_A Gamma-aminobutyric acid 38.1 86 0.0029 30.6 8.2 82 107-204 147-230 (433)
102 3hut_A Putative branched-chain 37.8 1.3E+02 0.0044 28.1 9.3 91 107-209 132-225 (358)
103 3i09_A Periplasmic branched-ch 37.7 91 0.0031 29.6 8.2 85 107-204 133-219 (375)
104 3lft_A Uncharacterized protein 37.4 99 0.0034 28.4 8.2 70 130-212 19-91 (295)
105 3o21_A Glutamate receptor 3; p 37.3 2.6E+02 0.0089 26.8 11.6 84 106-200 122-205 (389)
106 3dzc_A UDP-N-acetylglucosamine 37.0 1.8E+02 0.0062 28.4 10.4 47 161-212 97-143 (396)
107 3o8o_A 6-phosphofructokinase s 36.9 36 0.0012 37.3 5.5 61 160-223 84-167 (787)
108 1mkz_A Molybdenum cofactor bio 36.8 1.3E+02 0.0045 26.0 8.4 59 129-197 28-90 (172)
109 3gl9_A Response regulator; bet 36.4 1.3E+02 0.0044 23.2 7.7 77 116-211 3-83 (122)
110 3lte_A Response regulator; str 36.4 1.5E+02 0.005 22.9 8.8 66 115-199 6-74 (132)
111 2j48_A Two-component sensor ki 36.2 1E+02 0.0036 22.8 7.0 77 116-211 2-82 (119)
112 3gt7_A Sensor protein; structu 36.2 1.4E+02 0.0046 24.2 8.1 78 115-211 7-88 (154)
113 2obx_A DMRL synthase 1, 6,7-di 35.5 1E+02 0.0035 26.7 7.2 89 115-211 11-114 (157)
114 3eul_A Possible nitrate/nitrit 35.2 71 0.0024 25.8 6.1 79 114-210 14-95 (152)
115 2lqo_A Putative glutaredoxin R 34.6 40 0.0014 26.3 4.1 64 373-443 17-82 (92)
116 2fqx_A Membrane lipoprotein TM 34.6 2.9E+02 0.0099 25.8 11.4 86 115-213 4-95 (318)
117 3eaf_A ABC transporter, substr 34.5 1.1E+02 0.0036 29.4 8.2 84 114-209 140-230 (391)
118 3cg0_A Response regulator rece 34.3 1.6E+02 0.0056 22.8 8.6 76 115-210 9-88 (140)
119 3e61_A Putative transcriptiona 34.1 2.5E+02 0.0084 25.0 10.3 84 116-214 9-96 (277)
120 1rvv_A Riboflavin synthase; tr 34.0 1.6E+02 0.0055 25.4 8.2 89 115-211 12-115 (154)
121 2zay_A Response regulator rece 33.9 1.3E+02 0.0043 23.9 7.4 78 115-211 8-89 (147)
122 3td9_A Branched chain amino ac 33.8 2.8E+02 0.0094 25.9 11.0 83 114-208 148-234 (366)
123 3s99_A Basic membrane lipoprot 33.6 1.2E+02 0.0041 29.6 8.3 89 115-213 26-119 (356)
124 1e2b_A Enzyme IIB-cellobiose; 33.3 51 0.0017 26.4 4.6 32 116-147 4-36 (106)
125 3eod_A Protein HNR; response r 33.1 1.3E+02 0.0043 23.3 7.1 76 115-210 7-85 (130)
126 2rjn_A Response regulator rece 32.7 1.8E+02 0.0062 23.2 8.3 76 115-210 7-85 (154)
127 2i0f_A 6,7-dimethyl-8-ribityll 32.6 1.8E+02 0.0062 25.2 8.3 85 116-210 13-116 (157)
128 3mm4_A Histidine kinase homolo 32.6 2E+02 0.0068 24.9 9.0 80 115-212 61-159 (206)
129 3hzh_A Chemotaxis response reg 32.5 2E+02 0.0068 23.3 8.6 77 116-211 37-118 (157)
130 1dp4_A Atrial natriuretic pept 32.5 1.3E+02 0.0046 29.0 8.6 85 107-204 139-230 (435)
131 3iwt_A 178AA long hypothetical 32.3 1.6E+02 0.0055 25.3 8.2 53 130-192 41-95 (178)
132 3bfj_A 1,3-propanediol oxidore 32.0 50 0.0017 32.6 5.3 54 329-387 262-315 (387)
133 3cg4_A Response regulator rece 32.0 1.7E+02 0.0059 22.8 7.9 77 115-210 7-87 (142)
134 3sg0_A Extracellular ligand-bi 31.9 62 0.0021 30.7 5.9 86 107-205 152-239 (386)
135 3ipc_A ABC transporter, substr 31.8 99 0.0034 29.0 7.3 85 114-209 137-224 (356)
136 3c3k_A Alanine racemase; struc 31.6 2.9E+02 0.0098 24.8 11.3 85 115-213 8-95 (285)
137 3en0_A Cyanophycinase; serine 31.6 1.4E+02 0.0047 28.5 8.2 110 93-215 27-154 (291)
138 2qxy_A Response regulator; reg 31.6 1.5E+02 0.0052 23.2 7.5 76 115-210 4-81 (142)
139 1di0_A Lumazine synthase; tran 31.1 1.2E+02 0.004 26.4 6.9 89 115-211 10-113 (158)
140 4d9b_A D-cysteine desulfhydras 31.1 2.3E+02 0.0079 27.1 9.9 33 180-213 202-235 (342)
141 3nbm_A PTS system, lactose-spe 30.9 2.1E+02 0.0071 23.0 8.9 81 115-213 6-87 (108)
142 3s5p_A Ribose 5-phosphate isom 30.8 1.9E+02 0.0064 25.4 8.1 88 117-213 23-110 (166)
143 3kg2_A Glutamate receptor 2; I 30.7 77 0.0026 34.0 6.9 84 106-198 113-197 (823)
144 3ph3_A Ribose-5-phosphate isom 30.7 2E+02 0.0068 25.3 8.3 89 116-213 21-109 (169)
145 3k4h_A Putative transcriptiona 30.6 2.8E+02 0.0097 24.8 10.1 86 115-213 8-101 (292)
146 2gkg_A Response regulator homo 30.5 1.6E+02 0.0056 22.2 7.4 78 116-213 6-88 (127)
147 4f06_A Extracellular ligand-bi 30.5 90 0.0031 29.8 6.8 70 107-186 132-202 (371)
148 3kht_A Response regulator; PSI 30.4 1.5E+02 0.005 23.5 7.2 80 115-211 5-88 (144)
149 3m9w_A D-xylose-binding peripl 30.4 3E+02 0.01 25.0 10.4 75 127-214 17-93 (313)
150 3hhe_A Ribose-5-phosphate isom 29.8 1.4E+02 0.0047 28.1 7.6 54 161-215 24-78 (255)
151 3rqi_A Response regulator prot 29.8 1.6E+02 0.0054 24.8 7.7 76 115-210 7-85 (184)
152 2vvr_A Ribose-5-phosphate isom 29.7 2.7E+02 0.0091 23.9 8.9 88 117-213 3-90 (149)
153 3o74_A Fructose transport syst 29.6 2.7E+02 0.0092 24.5 9.7 85 116-213 3-91 (272)
154 1usg_A Leucine-specific bindin 29.6 3.3E+02 0.011 24.9 12.0 85 114-209 137-224 (346)
155 3he8_A Ribose-5-phosphate isom 29.4 2.3E+02 0.0077 24.4 8.3 88 117-213 2-89 (149)
156 1hqk_A 6,7-dimethyl-8-ribityll 29.3 1.7E+02 0.0059 25.2 7.6 88 115-211 12-115 (154)
157 3nq4_A 6,7-dimethyl-8-ribityll 29.3 2.1E+02 0.007 24.8 8.1 70 115-192 12-90 (156)
158 3nkl_A UDP-D-quinovosamine 4-d 28.5 1.2E+02 0.0042 24.4 6.5 47 165-213 55-101 (141)
159 3hdv_A Response regulator; PSI 28.3 1.8E+02 0.0061 22.6 7.3 78 115-211 7-88 (136)
160 3t6k_A Response regulator rece 28.0 2.2E+02 0.0074 22.3 9.0 77 115-210 4-84 (136)
161 3l6u_A ABC-type sugar transpor 28.0 3.3E+02 0.011 24.3 11.9 88 115-213 8-98 (293)
162 1o1x_A Ribose-5-phosphate isom 27.8 3E+02 0.01 23.8 8.9 90 115-213 12-101 (155)
163 3hcw_A Maltose operon transcri 27.5 3E+02 0.01 24.9 9.7 73 128-213 28-100 (295)
164 3qek_A NMDA glutamate receptor 27.3 1.7E+02 0.0059 27.8 8.3 96 107-213 132-251 (384)
165 3ot1_A 4-methyl-5(B-hydroxyeth 27.2 1.8E+02 0.0062 25.6 7.8 94 115-213 9-113 (208)
166 2hqb_A Transcriptional activat 27.0 2.2E+02 0.0074 26.3 8.7 72 129-212 24-95 (296)
167 2pbq_A Molybdenum cofactor bio 26.7 1.5E+02 0.0052 25.8 7.0 57 130-196 26-88 (178)
168 3rfq_A Pterin-4-alpha-carbinol 26.2 99 0.0034 27.5 5.7 55 128-192 48-103 (185)
169 3l3b_A ES1 family protein; ssg 25.8 2.5E+02 0.0085 25.7 8.7 35 180-214 109-161 (242)
170 3k7p_A Ribose 5-phosphate isom 25.8 2.9E+02 0.0098 24.5 8.5 88 117-213 24-113 (179)
171 1vhq_A Enhancing lycopene bios 25.6 1.9E+02 0.0063 26.0 7.7 35 180-214 92-143 (232)
172 1kz1_A 6,7-dimethyl-8-ribityll 25.5 2.4E+02 0.008 24.5 7.8 89 115-211 17-121 (159)
173 3d02_A Putative LACI-type tran 25.4 3.7E+02 0.013 24.1 12.2 74 130-213 22-95 (303)
174 2rk3_A Protein DJ-1; parkinson 25.3 3.3E+02 0.011 23.5 10.4 89 115-214 3-109 (197)
175 1wkv_A Cysteine synthase; homo 25.2 2.9E+02 0.01 27.2 9.6 112 92-213 169-288 (389)
176 4f21_A Carboxylesterase/phosph 25.2 1.5E+02 0.0052 26.8 7.0 55 117-173 185-242 (246)
177 3uug_A Multiple sugar-binding 25.0 4E+02 0.014 24.3 11.9 88 116-214 4-94 (330)
178 4e7p_A Response regulator; DNA 24.6 2.6E+02 0.009 22.1 8.0 78 116-211 21-101 (150)
179 1tvm_A PTS system, galactitol- 24.5 85 0.0029 25.3 4.5 31 115-145 21-53 (113)
180 1n57_A Chaperone HSP31, protei 24.4 4.2E+02 0.014 24.7 10.2 38 177-214 144-188 (291)
181 3o1i_D Periplasmic protein TOR 24.0 3.6E+02 0.012 24.1 9.6 87 115-213 5-96 (304)
182 1v95_A Nuclear receptor coacti 23.8 1.2E+02 0.004 25.5 5.3 19 129-149 22-40 (130)
183 3gv0_A Transcriptional regulat 23.7 2.7E+02 0.0092 25.1 8.6 86 115-213 8-98 (288)
184 1ejb_A Lumazine synthase; anal 23.7 3.2E+02 0.011 23.9 8.4 73 115-192 16-98 (168)
185 2qr3_A Two-component system re 23.7 2.3E+02 0.0079 21.9 7.2 75 116-210 4-86 (140)
186 3gyb_A Transcriptional regulat 23.5 1.2E+02 0.0041 27.3 6.0 82 115-214 5-89 (280)
187 3ksm_A ABC-type sugar transpor 23.5 3.8E+02 0.013 23.5 10.2 75 128-213 16-93 (276)
188 2fep_A Catabolite control prot 23.4 4E+02 0.014 23.9 11.3 86 115-213 16-104 (289)
189 3ixq_A Ribose-5-phosphate isom 23.4 87 0.003 28.9 4.8 38 177-214 18-57 (226)
190 1qkk_A DCTD, C4-dicarboxylate 23.1 1.7E+02 0.0058 23.5 6.4 76 115-210 3-81 (155)
191 1k68_A Phytochrome response re 23.1 2.6E+02 0.0087 21.4 7.5 80 115-211 2-92 (140)
192 1srr_A SPO0F, sporulation resp 23.0 2.5E+02 0.0085 21.3 9.0 75 116-210 4-81 (124)
193 3o1n_A 3-dehydroquinate dehydr 22.8 4.7E+02 0.016 24.4 10.4 54 157-213 171-230 (276)
194 3ot5_A UDP-N-acetylglucosamine 22.7 5.3E+02 0.018 25.0 11.4 48 161-213 100-147 (403)
195 2q5c_A NTRC family transcripti 22.5 3.9E+02 0.013 23.4 9.6 43 160-213 37-79 (196)
196 3cfy_A Putative LUXO repressor 22.4 2.8E+02 0.0096 21.7 8.7 75 116-210 5-82 (137)
197 3kke_A LACI family transcripti 22.2 3.1E+02 0.011 24.9 8.7 85 116-214 16-104 (303)
198 3cnb_A DNA-binding response re 22.1 2.8E+02 0.0094 21.4 8.0 78 115-210 8-90 (143)
199 3h5i_A Response regulator/sens 22.1 2.8E+02 0.0097 21.6 8.9 77 115-212 5-86 (140)
200 4e08_A DJ-1 beta; flavodoxin-l 22.0 70 0.0024 27.8 3.8 95 115-214 5-110 (190)
201 2is8_A Molybdopterin biosynthe 22.0 1.4E+02 0.0046 25.6 5.6 58 130-197 22-83 (164)
202 3hs3_A Ribose operon repressor 21.9 2.6E+02 0.0088 25.1 8.0 82 115-213 10-94 (277)
203 2m1z_A LMO0427 protein; homolo 21.8 2.5E+02 0.0084 22.6 6.7 79 117-213 4-86 (106)
204 2b4a_A BH3024; flavodoxin-like 21.4 2.6E+02 0.0088 21.7 7.1 78 114-211 14-95 (138)
205 1j0a_A 1-aminocyclopropane-1-c 21.4 5.1E+02 0.017 24.3 11.7 34 179-213 183-217 (325)
206 3e3m_A Transcriptional regulat 21.2 5E+02 0.017 24.1 11.8 84 115-211 70-156 (355)
207 3s4y_A Thiamin pyrophosphokina 21.1 3.2E+02 0.011 25.1 8.4 51 132-193 81-138 (247)
208 3khj_A Inosine-5-monophosphate 21.0 2.2E+02 0.0074 27.9 7.5 51 158-216 190-241 (361)
209 1y5e_A Molybdenum cofactor bio 21.0 2.9E+02 0.0099 23.6 7.6 70 118-197 17-93 (169)
210 1mb3_A Cell division response 20.8 2.7E+02 0.0093 20.9 8.1 76 116-210 2-81 (124)
211 1dbq_A Purine repressor; trans 20.8 4.4E+02 0.015 23.3 10.9 87 115-213 7-96 (289)
212 1f2d_A 1-aminocyclopropane-1-c 20.8 5.4E+02 0.018 24.3 10.8 51 162-213 177-228 (341)
213 3hp4_A GDSL-esterase; psychrot 20.7 3.4E+02 0.012 22.3 8.0 59 115-177 2-68 (185)
214 2vvp_A Ribose-5-phosphate isom 20.6 2.7E+02 0.0094 24.2 7.2 88 117-213 5-93 (162)
215 2rjo_A Twin-arginine transloca 20.4 5E+02 0.017 23.8 10.7 88 115-213 5-97 (332)
216 3gbv_A Putative LACI-family tr 20.3 4.6E+02 0.016 23.3 10.8 83 107-197 126-218 (304)
217 3m6m_D Sensory/regulatory prot 20.2 3.2E+02 0.011 21.5 8.5 78 115-211 14-97 (143)
218 4h0c_A Phospholipase/carboxyle 20.2 1.1E+02 0.0038 26.9 4.8 54 116-171 152-208 (210)
219 3lft_A Uncharacterized protein 20.1 4.6E+02 0.016 23.6 9.5 80 106-197 123-205 (295)
220 1jdp_A NPR-C, atrial natriuret 20.1 2.5E+02 0.0087 27.2 8.0 80 107-200 147-231 (441)
No 1
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=100.00 E-value=2.4e-76 Score=604.61 Aligned_cols=360 Identities=51% Similarity=0.822 Sum_probs=340.4
Q ss_pred CCeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCC
Q 013271 81 APTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYK 159 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~ 159 (446)
.|++++|++++++|+|+||+|++++ + +++.. .++|++||||+++.+.+.+++.+.|++.| +++..++++++|++|
T Consensus 29 ~m~~~~v~l~~~~y~I~~G~g~l~~l~-~l~~~-~~~rvlIVtd~~v~~~~~~~v~~~L~~~g--~~~~~~~~~~gE~~k 104 (390)
T 3okf_A 29 TMERITVNLGERSYPISIGAGLFANPA-LLSLS-AKQKVVIVTNHTVAPLYAPAIISLLDHIG--CQHALLELPDGEQYK 104 (390)
T ss_dssp CEEEEEECCGGGCEEEEEETTGGGCGG-GGCCC-TTCEEEEEEETTTHHHHHHHHHHHHHHHT--CEEEEEEECSSGGGC
T ss_pred CceEEEEECCCCCCCEEEeCCHHHhHH-HHHhc-CCCEEEEEECCcHHHHHHHHHHHHHHHcC--CeEEEEEECCCcCCc
Confidence 5788999999999999999999999 8 77654 57999999999999999999999999988 466677899999999
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCccccccc
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGA 239 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~ 239 (446)
++++++++++.++++++||+|+|||||||+++|+|||+|++|++|+|+|+||||++|++||++|++++++.+.+||++|.
T Consensus 105 t~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rgip~I~IPTTlla~vDssvggkt~I~~~~~Kn~ig~ 184 (390)
T 3okf_A 105 TLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRGVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGA 184 (390)
T ss_dssp BHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHHTSSSCEEEEEETTEEEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCCCCEEEeCCCCccccccCcCCeEEEEcCCCceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhh
Q 013271 240 FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKE 319 (446)
Q Consensus 240 ~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~ 319 (446)
|++|.+||+||+++.|+|++++++|++|+|||+++.||++|+|++.+..++.+.+.+.+.++|.+|++.|.++++.|++|
T Consensus 185 f~~P~~ViiD~~~l~tlP~r~~~aG~~D~lkha~i~D~~~~~~l~~~~~~l~~~~~~~l~~~i~~s~~~K~~vV~~D~~E 264 (390)
T 3okf_A 185 FYQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAFFDWLEAQMEALYALDEQALTYAIARCCQIKAEVVAQDEKE 264 (390)
T ss_dssp ECCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccCCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 99999999999999999999999999999999999999999999988777777788889999999999999999999999
Q ss_pred hhhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHH
Q 013271 320 SGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFK 399 (446)
Q Consensus 320 ~G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~ 399 (446)
.|+|+.||||||||||||..++|+.++||||||+||.++++++.++|+++++.++++.++|+++|+|++++..++.+++.
T Consensus 265 ~g~R~~Ln~GHT~gHAiE~~~~~~~~~HGeaVaiGm~~~a~ls~~~g~~~~~~~~ri~~~l~~~glp~~~~~~~~~~~~~ 344 (390)
T 3okf_A 265 SGIRALLNLGHTFGHAIEAHMGYGNWLHGEAVSAGTVMAAKTAQLQGLIDASQFERILAILKKAHLPVRTPENMTFADFM 344 (390)
T ss_dssp -CGGGGGGTTHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCCSCCTTCCHHHHH
T ss_pred hcccchhccchHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHH
Confidence 99999999999999999998878679999999999999999999999999999999999999999999988658999999
Q ss_pred HHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHhh
Q 013271 400 SIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 445 (446)
Q Consensus 400 ~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~~ 445 (446)
+.|.+|||+++|+++|+||++ ||++.+..+++++++.++++++++
T Consensus 345 ~~m~~DKK~~~g~i~~vL~~~-iG~~~~~~~v~~~~l~~~l~~~~~ 389 (390)
T 3okf_A 345 QHMMRDKKVLAGELRLVLPTS-IGTSAVVKGVPEAVIAQAIEYCRT 389 (390)
T ss_dssp HHHTGGGTCCTTCCEEEEEEE-TTEEEEEECCCHHHHHHHHHHTTC
T ss_pred HHHHhhhcccCCEEEEEEECC-CCcEEEECCCCHHHHHHHHHHhcc
Confidence 999999999999999999998 999999989999999999988754
No 2
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=100.00 E-value=3.8e-73 Score=577.69 Aligned_cols=354 Identities=39% Similarity=0.604 Sum_probs=328.6
Q ss_pred CeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCc
Q 013271 82 PTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN 160 (446)
Q Consensus 82 ~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t 160 (446)
..+++|+ +++||+|+||+|++++ ++++++ .+|++||||+++.+. .+++.+.|++.| +++.+++++++|++|+
T Consensus 13 ~~~~~v~-~~~~~~I~~G~g~l~~l~~~l~~---~~rvlIVtd~~v~~~-~~~v~~~L~~~g--~~~~~~~~~~gE~~kt 85 (368)
T 3qbe_A 13 PVTVQVA-VDPPYPVVIGTGLLDELEDLLAD---RHKVAVVHQPGLAET-AEEIRKRLAGKG--VDAHRIEIPDAEAGKD 85 (368)
T ss_dssp CEEEEEC-SSSCEEEEEESCCHHHHHHHHTT---CSEEEEEECGGGHHH-HHHHHHHHHHTT--CEEEEEECCSGGGGGB
T ss_pred CeEEEEC-CCCCceEEEcCCHHHHHHHHHHc---CCEEEEEECccHHHH-HHHHHHHHHhcC--CcceEEEeCCCCCCCC
Confidence 4568888 5689999999999999 888875 389999999999886 799999999998 4667788999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccc
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 240 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~ 240 (446)
+++++++++.+++++++|.|+|||||||+++|+|||+|++|++|+|+|+||||++|++||++|+|++|+.+.+||+++.|
T Consensus 86 ~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rgip~i~IPTTlla~vDssvggkt~V~~~~~Kn~ig~~ 165 (368)
T 3qbe_A 86 LPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGVSIVHLPTTLLGMVDAAVGGKTGINTDAGKNLVGAF 165 (368)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccCCcEEEECCCCccccccCcCceEEEECCCCceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhhh
Q 013271 241 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 320 (446)
Q Consensus 241 ~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~~ 320 (446)
++|+.||+||+++.|+|++++++|++|++||+++.||++|+|++.+...+++.+.+.+.++|.++++.|.++++.|++|.
T Consensus 166 ~~P~~viiDp~~l~tlP~r~~~sG~ad~ik~~~i~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~Ka~vV~~D~~e~ 245 (368)
T 3qbe_A 166 HQPLAVLVDLATLQTLPRDEMICGMAEVVKAGFIADPVILDLIEADPQAALDPAGDVLPELIRRAITVKAEVVAADEKES 245 (368)
T ss_dssp CCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHCHHHHTCTTSSHHHHHHHHHHHHHHHHHHC----C
T ss_pred cCCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhCHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 99999999999999999999999999999999999999999999877666665555688999999999999999999999
Q ss_pred hhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 013271 321 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 400 (446)
Q Consensus 321 G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~ 400 (446)
|+|+.||||||||||||...+| .++||||||+||.++++++.++|+++++.++++.++|+++|+|+.+++ ++.+++.+
T Consensus 246 g~R~~Ln~GHT~gHAiE~~~~~-~~~HGeaVaiGm~~~~~ls~~~g~~~~~~~~~i~~~l~~~glp~~~~~-~~~~~~~~ 323 (368)
T 3qbe_A 246 ELREILNYGHTLGHAIERRERY-RWRHGAAVSVGLVFAAELARLAGRLDDATAQRHRTILSSLGLPVSYDP-DALPQLLE 323 (368)
T ss_dssp CGGGGGGTTHHHHHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTCCCCCCT-TCHHHHHH
T ss_pred hhhhhhccchHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHH
Confidence 9999999999999999999888 799999999999999999999999999999999999999999998774 78999999
Q ss_pred HHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHhh
Q 013271 401 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 445 (446)
Q Consensus 401 ~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~~ 445 (446)
.|.+|||+++|+++|+||++ ||++.+..+++++++++++++++.
T Consensus 324 ~m~~dkK~~~~~~~~vl~~~-iG~~~~~~~~~~~~l~~a~~~~~~ 367 (368)
T 3qbe_A 324 IMAGDKKTRAGVLRFVVLDG-LAKPGRMVGPDPGLLVTAYAGVCA 367 (368)
T ss_dssp HHHTSTTCBTTBCEEEEESS-TTCEEEEESCCHHHHHHHHHHHHC
T ss_pred HHHHhhCccCCEEEEEEECC-CCcEEEECCCCHHHHHHHHHHhhC
Confidence 99999999999999999998 999999999999999999998764
No 3
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=100.00 E-value=2.9e-70 Score=558.72 Aligned_cols=354 Identities=26% Similarity=0.405 Sum_probs=326.0
Q ss_pred CeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCc
Q 013271 82 PTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN 160 (446)
Q Consensus 82 ~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t 160 (446)
|.++.|.++++||+|+||+|++++ ++++ +...++|++||||+++.+.+.+++.+.|++. + ++.+++++++|++|+
T Consensus 1 m~~~~v~~~~~~~~i~~G~g~l~~l~~~l-~~~~~~k~liVtd~~v~~~~~~~v~~~L~~~-~--~~~~~~~~~ge~~k~ 76 (368)
T 2gru_A 1 MTTKQICFADRCFNFAFGEHVLESVESYI-PRDEFDQYIMISDSGVPDSIVHYAAEYFGKL-A--PVHILRFQGGEEYKT 76 (368)
T ss_dssp -CEEEEEETTEEEEEEEETTSGGGGGGTS-CTTSCSEEEEEEETTSCHHHHHHHHHHHTTT-S--CEEEEEECCSGGGCS
T ss_pred CeEEEEecCCCCceEEEeCCHHHHHHHHH-hccCCCEEEEEECCcHHHHHHHHHHHHHHhc-c--ceeEEEeCCCCCCCC
Confidence 567889999999999999999999 8877 5423689999999999999999999999876 4 456678999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccc
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 240 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~ 240 (446)
+++++++++.+++++++|.|+|||||||+++|+|||+|++|+||+|+|+||||++|+|||++|++++|+.+.+||.+|.|
T Consensus 77 ~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~rgip~i~IPTTlla~tdS~v~~kt~I~~~~~Kn~ig~~ 156 (368)
T 2gru_A 77 LSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMMFRGIALIHVPTTFLAASDSVLSIKQAVNLTSGKNLVGFY 156 (368)
T ss_dssp HHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHhcCCCCEEEECCchHhhcCCCcCCeEEEECCCceeEeecC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred cCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhhh
Q 013271 241 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 320 (446)
Q Consensus 241 ~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~~ 320 (446)
++|++||+||+++.|+|++++++|++|+|||+++.|+.+|++++.+..++...+.+.+.+++.+++..+.+++..|++++
T Consensus 157 ~~P~~viiD~~~l~tlP~~~~~aG~~d~lkha~i~d~~~~~~l~~~~~~l~~~~~~~l~~~i~~~~~~k~~~v~~d~~e~ 236 (368)
T 2gru_A 157 YPPRFVFADTRILSESPPRQVKAGMCELVKNMLILENDNKEFTEDDLNSANVYSPKQLETFINFCISAKMSVLSEDIYEK 236 (368)
T ss_dssp CCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHSCCSCCSCCGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHTTCTTSS
T ss_pred CCCCEEEEchHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhhHHHHHhhcHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 99999999999999999999999999999999999999999887654344444456788999999999999999999999
Q ss_pred hhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 013271 321 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 400 (446)
Q Consensus 321 G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~ 400 (446)
|+|+.+|+|||++|+||..++| +++||++||+||+++++++.++|+.+++.++++.++++++|+|+++++.++.+++.+
T Consensus 237 G~r~~ln~Ght~~Haie~~~~~-~~~HGeavAigm~~~~~la~~~g~~~~~~~~~i~~ll~~~glP~~l~~~i~~~~~~~ 315 (368)
T 2gru_A 237 KKGLIFEYGHTIGHAIELAEQG-GITHGEAIAVGMIYAAKIANRMNLMPEHDVSAHYWLLNKIGALQDIPLKSDPDSIFH 315 (368)
T ss_dssp SGGGGGGTTHHHHHHHHHHTTT-SSCHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTTSCCCCCCHHHHHH
T ss_pred CchhhhcchhHHHHHHHHccCC-CCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCcCCCCHHHHHH
Confidence 9999999999999999999876 899999999999999999999999888899999999999999999986689999999
Q ss_pred HHHHhHh-----hcCCceEEEeecCCCCceeEcCCCCHHHHHHHHH
Q 013271 401 IMAVDKK-----VADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 441 (446)
Q Consensus 401 ~l~~dkk-----~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~ 441 (446)
.|.+||| +++|+++|+||++ ||++.+..+++++++.++++
T Consensus 316 ~~~~dkK~~~~~~~~~~~~~vll~~-iG~~~~~~~v~~~~~~~~~~ 360 (368)
T 2gru_A 316 YLIHDNKRGYIKLDEDNLGMILLSG-VGKPAMYNQTLLTPVRKTLI 360 (368)
T ss_dssp HHHTCCSSSSSBCSSSEEEECCEEE-TTEECCBTTBSCEEEEHHHH
T ss_pred HHHHhhccccccccCCEEEEEEEcC-CCceEEeCCCCHHHHHHHHH
Confidence 9999999 9999999999998 99999988899888877764
No 4
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=100.00 E-value=2.5e-68 Score=539.55 Aligned_cols=341 Identities=38% Similarity=0.609 Sum_probs=282.8
Q ss_pred CeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCc
Q 013271 82 PTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN 160 (446)
Q Consensus 82 ~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t 160 (446)
|.++.|.+++++|+|+| |++++ ++ ++|++||||+++.+.+.+++.+.|++.+ +.+++++++|++|+
T Consensus 1 m~~~~v~~~~~~~~i~~--g~l~~l~~-------~~~~livtd~~v~~~~~~~v~~~L~~~~----~~~~~~~~~e~~k~ 67 (343)
T 3clh_A 1 MQEILIPLKEKNYKVFL--GELPEIKL-------KQKALIISDSIVAGLHLPYLLERLKALE----VRVCVIESGEKYKN 67 (343)
T ss_dssp ---CBCCBCSSSCBEEE--SSCCCEEC-------SSCEEEEEEHHHHTTTHHHHHTTEECSC----EEEEEECSSGGGCS
T ss_pred CeEEEEecCCCceEEEE--EehhhcCC-------CCEEEEEECCcHHHHHHHHHHHHHHhCC----cEEEEeCCCCCCCC
Confidence 44577888889999999 98888 53 5799999999999889999999997764 45678899999999
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccc
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 240 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~ 240 (446)
+++++++++.+++++++|+|+||||||||++|+|||+|++|++++|+|+||||++|++||++|++++++.+..||++|.|
T Consensus 68 ~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~~rgip~i~IPTTlla~vDasvg~k~~v~~~~~Kn~ig~~ 147 (343)
T 3clh_A 68 FHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYGKNLIGSF 147 (343)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTSSSCEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHhccCCCEEEeCCchhhccccccCCeEEEECcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhhh
Q 013271 241 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 320 (446)
Q Consensus 241 ~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~~ 320 (446)
++|+.||+||+++.|+|++++++|++|+|||+++.|++||++++.+. ++. . +.+++.++++.+.+++..|+.+.
T Consensus 148 ~~P~~vi~D~~~l~tlP~~~~~ag~~d~lkh~~i~d~~~~~~l~~~~---~~~--~-~~~~i~~~~~~k~~vv~~d~~e~ 221 (343)
T 3clh_A 148 HQPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKNLVERLETKD---LKD--C-LEEVIFQSVNIKAQVVVQDEKEQ 221 (343)
T ss_dssp CCCSEEEECTTSGGGSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSC---TTT--S-HHHHHHHHHHHHHHHC-------
T ss_pred CCCCEEEEcHHHHhcCCHHHHHhHHHHHHHHHHHcCHHHHHHHHhCc---CCH--H-HHHHHHHHHHHHHHHhccCchhh
Confidence 99999999999999999999999999999999999999999987652 222 2 67899999999999999999999
Q ss_pred hhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 013271 321 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 400 (446)
Q Consensus 321 G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~ 400 (446)
|+|+.+|+||+|+|+||...+|++++||++||+||++++++++++|..+++.++++.++++++|+|+++++ ++.+++.+
T Consensus 222 g~r~~ln~gHt~~Hale~~~~~~~~~HGeavAig~~~~~~la~~~g~~~~~~~~~i~~ll~~~glP~~l~~-~~~~~~~~ 300 (343)
T 3clh_A 222 NIRAGLNYGHTFGHAIEKETDYERFLHGEAIAIGMRMANDLALSLGMLTLKEYERIENLLKKFDLIFHYKI-LDLQKFYE 300 (343)
T ss_dssp --CTTTTTTHHHHHHHHHHTTTSSCCHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHTTCCCCCC----------
T ss_pred hHHHHHhhHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCCc-CCHHHHHH
Confidence 99999999999999999986665799999999999999999999998888899999999999999999985 58889999
Q ss_pred HHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHH
Q 013271 401 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 443 (446)
Q Consensus 401 ~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~ 443 (446)
.|..|||+++|+++|+||++ ||++.+..+++++++.+++++|
T Consensus 301 ~~~~dkk~~~~~~~~vl~~~-iG~~~~~~~v~~~~l~~~~~~~ 342 (343)
T 3clh_A 301 RLFLDKKSENKTIKFILPKG-VGAFEVASHIPKETIIKVLEKW 342 (343)
T ss_dssp --------------CCEECS-SSCEECCCCCCHHHHHHHSTTC
T ss_pred HHHHhhcccCCeEEEEEEcc-cCcEEEECCCCHHHHHHHHHHh
Confidence 99999999999999999998 9999998899999999998765
No 5
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=100.00 E-value=2.7e-67 Score=534.22 Aligned_cols=345 Identities=33% Similarity=0.543 Sum_probs=292.1
Q ss_pred EEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHH
Q 013271 85 VEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDT 163 (446)
Q Consensus 85 ~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~ 163 (446)
+.|.++++||+|+||+|++++ ++++++ . +|++||||+++.+.+.+++.+.| +.| ++.+++|+++|++|++++
T Consensus 3 ~~v~~~~~~~~i~~G~g~l~~l~~~l~~--~-~~~liVtd~~~~~~~~~~v~~~L-~~g---~~~~~~~~~~e~~p~~~~ 75 (354)
T 1xah_A 3 LQTTYPSNNYPIYVEHGAIKYIGTYLNQ--F-DQSFLLIDEYVNQYFANKFDDIL-SYE---NVHKVIIPAGEKTKTFEQ 75 (354)
T ss_dssp EECCCSSCCCEEEEETTGGGHHHHHHTT--C-SCEEEEEEHHHHHHHHHHHC----------CEEEEEECSGGGGCSHHH
T ss_pred EEEecCCCCccEEEcCChHHHHHHHHHh--c-CeEEEEECCcHHHHHHHHHHHHH-hcC---CeEEEEECCCCCCCCHHH
Confidence 677888899999999999999 888876 2 89999999999988999999999 766 245678999999999999
Q ss_pred HHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCc
Q 013271 164 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQP 243 (446)
Q Consensus 164 v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P 243 (446)
++++++.++++++||+|+||||||||++|+|||+|++|++++|+|+||||++|+ ||++++|++++.+.+||+++.|++|
T Consensus 76 v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~~rgip~i~IPTT~~a~-ds~vg~K~~i~~~~~kn~~g~~~~P 154 (354)
T 1xah_A 76 YQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFIQVPTTILAH-DSSVGGKVGINSKQGKNLIGAFYRP 154 (354)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSTTHH-HHTSSCEEEECCSSSTTCEEEECCC
T ss_pred HHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHhccCCCEEEECCccccc-ccccCceEEEEcCCceeeeecCCCC
Confidence 999999999999999999999999999999999999999999999999999888 9999999999999999999999999
Q ss_pred eEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhh--Hhh-cCCHHHHHHHHHHHHHhhHhHhhcchhhh
Q 013271 244 QCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMH--KLM-ARDPRAFAYAIKRSCENKAEVVSLDEKES 320 (446)
Q Consensus 244 ~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~--~~~-~~~~~~l~~~i~~s~~~~~~~v~~d~~~~ 320 (446)
+.||+||+++.|+|++++++|++|+|||+++.||+||++++++.. +.+ +. +.+.+.+.+++..+.+++.+|+++.
T Consensus 155 ~~viiDp~~l~tlP~~~~~aG~~d~lkha~i~De~~~~~~~~~~~~~~~~~a~--~~l~~~l~~~~~~~~~~~~~d~~e~ 232 (354)
T 1xah_A 155 TAVIYDLDFLKTLPFKQILSGYAEVYKHALLNGESATQDIEQHFKDREILQSL--NGMDKYIAKGIETKLDIVVADEKEQ 232 (354)
T ss_dssp SEEEEEGGGGGGCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCSHHHHHHT--TTHHHHHHHHHHHHHHHHHHSTTSS
T ss_pred cEEEEcHHHHhhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhhhhhhhHH--HHHHHHHHHHHHHHHHHhccCchhh
Confidence 999999999999999999999999999999999999999987655 554 43 4577899999999999999999999
Q ss_pred hhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 013271 321 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 400 (446)
Q Consensus 321 G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~ 400 (446)
|.|+.+|+||+++|+|| . |++++||++||+||++++++++.+|. +++.++++.++++++|+|+++++.++.+++.+
T Consensus 233 g~r~~l~~gHt~~Hale-~--~~~~~HG~avaig~~~~~~la~~~g~-~~~~~~~i~~l~~~~glP~~l~~~l~~~~~~~ 308 (354)
T 1xah_A 233 GVRKFLNLGHTFGHAVE-Y--YHKIPHGHAVMVGIIYQFIVANALFD-SKHDISHYIQYLIQLGYPLDMITDLDFETLYQ 308 (354)
T ss_dssp SGGGGGGTTTHHHHHHH-H--HHCCCHHHHHHHHHHHHHHHHHHHTC-CCCCHHHHHHHHHHHTCCCC------------
T ss_pred CCccccccHHHHHHHHh-c--CCCCCcHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCcCCCCCCCCCHHHHHH
Confidence 99999999999999999 3 44799999999999999999999998 66778999999999999999985467788999
Q ss_pred HHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHhh
Q 013271 401 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 445 (446)
Q Consensus 401 ~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~~ 445 (446)
.|..|||+++|+++|+||++ ||++.+.. ++++++.+++++|+.
T Consensus 309 ~~~~dkk~~~~~~~~~l~~~-iG~~~~~~-~~~~~l~~~~~~~~~ 351 (354)
T 1xah_A 309 YMLSDKKNDKQGVQMVLMRQ-FGDIVVQH-VDQLTLQHACEQLKT 351 (354)
T ss_dssp -----------CBCCEEEEE-TTEEEECC-BCHHHHHHHHHHHHH
T ss_pred HHHHhHhhcCCCEEEEEEcc-cCcEEEec-CCHHHHHHHHHHHHH
Confidence 99999999999999999998 99999875 999999999988764
No 6
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=100.00 E-value=1.2e-66 Score=528.08 Aligned_cols=335 Identities=34% Similarity=0.486 Sum_probs=298.8
Q ss_pred CeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCc
Q 013271 82 PTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN 160 (446)
Q Consensus 82 ~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t 160 (446)
|.++.|++++ ||+|+||+|++++ +++ ++|++||||+++.+ +.+++.+.|+ .+ +. ++++++|++|+
T Consensus 1 m~~~~v~~~~-~~~i~~G~g~l~~l~~~------~~kvliVtd~~v~~-~~~~v~~~L~-~~----~~-~~~~~ge~~~~ 66 (348)
T 1ujn_A 1 MQRLEVREPV-PYPILVGEGVLKEVPPL------AGPAALLFDRRVEG-FAQEVAKALG-VR----HL-LGLPGGEAAKS 66 (348)
T ss_dssp CEEEEECSSS-CEEEEEESCGGGGSCCC------SSCEEEEEEGGGHH-HHHHHHHHHT-CC----CE-EEECCSGGGSS
T ss_pred CeEEEEcCCC-CeeEEEcCChHHhhHhh------CCEEEEEECCcHHH-HHHHHHHHhc-cC----eE-EEECCCCCCCC
Confidence 5678999988 9999999999988 543 57999999999999 9999999998 43 45 77899999999
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccc
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 240 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~ 240 (446)
+++++++++.+++++++|.|+||||||||++|+|||+|++|++++|+|+||||++|++||++++|++++.+.+||+++.|
T Consensus 67 ~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~~rgip~i~IPTTlla~vds~~g~k~~i~~~~~kn~ig~~ 146 (348)
T 1ujn_A 67 LEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATYLRGVAYLAFPTTTLAIVDASVGGKTGINLPEGKNLVGAF 146 (348)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHhccCCCEEEecCcHHHhhccccCceEEEecCCcceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHH---HHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcch
Q 013271 241 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFF---EWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDE 317 (446)
Q Consensus 241 ~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~---~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~ 317 (446)
++|++||+||+++.|+|++++++|++|+|||+++.||+|| +|++.+. +.+.+++.+++..+.+++..|+
T Consensus 147 ~~P~~vi~D~~~l~tlP~~~~~aG~~d~lkh~~i~d~~~~~~~~~l~~~~--------~~l~~~i~~~~~~k~~~v~~d~ 218 (348)
T 1ujn_A 147 HFPQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEALLKVEDLTPQS--------PRLEAFLARAVAVKVRVTEEDP 218 (348)
T ss_dssp CCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHHTCGGGGCCTTCCTTC--------TTHHHHHHHHHHHHHHHHHHCT
T ss_pred cCCCEEEECHHHHhhCCHHHHHhHHHHHHHHHHHcCHHHhcchHHHHhhH--------HHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999999 7766542 2367899999999999999999
Q ss_pred hhhhhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHH
Q 013271 318 KESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEM 397 (446)
Q Consensus 318 ~~~G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~ 397 (446)
++.|+|+.+|+||+|+|+||..++| +++||++||+||++++++++++| +++.++++.++++++| |+++++ ++.++
T Consensus 219 ~e~g~r~~ln~GHt~~Hale~~~~~-~~~HGeavAig~~~~~~la~~~g--~~~~~~~i~~ll~~~g-P~~l~~-~~~~~ 293 (348)
T 1ujn_A 219 LEKGKRRLLNLGHTLGHALEAQTRH-ALPHGMAVAYGLLYAALLGRALG--GEDLLPPVRRLLLWLS-PPPLPP-LAFED 293 (348)
T ss_dssp TSSSGGGGGGTTHHHHHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHC-CCCCCC-CCHHH
T ss_pred hhhchhhHhcchHHHHHHHHhccCC-CCChHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhC-CCCCCc-CCHHH
Confidence 9999999999999999999998766 69999999999999999999988 5667899999999999 999985 79999
Q ss_pred HHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHhh
Q 013271 398 FKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 445 (446)
Q Consensus 398 ~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~~ 445 (446)
+.+.|.+|||+++|+++|+||++ ||++.+..++++ ++.+++++++.
T Consensus 294 ~~~~~~~dkk~~~~~~~~~ll~~-iG~~~~~~~~~~-~l~~~~~~~~~ 339 (348)
T 1ujn_A 294 LLPYLLRDKKKVSESLHWVVPLA-PGRLVVRPLPEG-LLREAFAAWRE 339 (348)
T ss_dssp HGGGC---------CCCEEEEEE-TTEEEEECCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHheeCCeEEEEEEcC-CCceEEecCCHH-HHHHHHHHHHH
Confidence 99999999999999999999998 999998766655 89998887653
No 7
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=100.00 E-value=2.8e-65 Score=526.10 Aligned_cols=353 Identities=36% Similarity=0.518 Sum_probs=305.1
Q ss_pred CCeEEEEecCCCceeEEEccCc-CCC-hhHh-hhcCCCCEEEEEECCCchhHHHHHHHHHHhcC------CCCeeEEEEE
Q 013271 81 APTIVEVDLGQRSYPIYIGSGL-LDH-PDLL-QKHVQGKKVLVVTNNTVAPLYLDKVTDALTRG------NPNVSVENVI 151 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~I~~G~g~-~~~-~~~l-~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~------gi~~~v~~~i 151 (446)
.|.++.+. .+|+|+||+|+ +++ ++.+ +.. +.+|++||||+++.+++.+++.+.|++. + +++..++
T Consensus 3 ~~~~f~~~---~~~~i~~G~g~~~~~l~~~~~~~~-~~~k~liVtd~~v~~~~~~~v~~~L~~~~~~~~~g--~~~~~~~ 76 (393)
T 1sg6_A 3 NPTKISIL---GRESIIADFGLWRNYVAKDLISDC-SSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPS--PRLLIYN 76 (393)
T ss_dssp -CEEEEET---TEEEEEEETTHHHHTHHHHHHHHS-CCSEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSC--CEEEEEE
T ss_pred CceeEEec---CCceEEEeCCccHHHHHHHHHHhc-CCCeEEEEECCcHHHHHHHHHHHHHHhhhccccCC--ceeEEEE
Confidence 37778885 68999999999 788 7654 443 4689999999999998999999999876 6 4555578
Q ss_pred eCCCCCCCcHHHHHHHHHHHHHcC--CCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEe
Q 013271 152 LPDGENYKNMDTLMKVFDKAIESR--LDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGIN 229 (446)
Q Consensus 152 ~~~ge~~~t~~~v~~~~~~~~~~~--~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~ 229 (446)
+++||++|++++++++++.+++++ ++|+|+|||||||+++|+|||+|++|+|++|+|+||||++||+|++++++++++
T Consensus 77 ~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~rgip~i~IPTTlla~~dasvg~kt~i~ 156 (393)
T 1sg6_A 77 RPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAID 156 (393)
T ss_dssp ECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGGGCCEEEEEECSHHHHHTTTSSCEEEEE
T ss_pred eCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCCCEEEECCchhhhhhcCcceEEeec
Confidence 899999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcC-------C-------H
Q 013271 230 HRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR-------D-------P 295 (446)
Q Consensus 230 ~~~~K~~ig~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~-------~-------~ 295 (446)
.+.+||+++.|++|++||+||+++.|+|++++++|++|++||+++.||++|++++.+....++. . .
T Consensus 157 ~~~~kn~~g~~~~P~~viiD~~~l~tlP~~~~~sG~aE~iK~~~i~d~~~~~~l~~~~e~~~~~~~~~~~d~~~a~~~i~ 236 (393)
T 1sg6_A 157 TPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTE 236 (393)
T ss_dssp ETTEEEEEEEECCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCCCCTTSCTTGGGH
T ss_pred CCCcccccccccCCcEEEEchHHHccCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHhhccccccchhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987544333221 0 2
Q ss_pred HHHHHHHHHHHHhhHhHhhcchhhhhhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHH
Q 013271 296 RAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKR 375 (446)
Q Consensus 296 ~~l~~~i~~s~~~~~~~v~~d~~~~G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~ 375 (446)
+.+.+++.+++..+.+++..|++++|+|..+|+||+|+|+||..+++ +++||++||+||++.+++++.+|+.+++.+++
T Consensus 237 ~~l~~~i~~~~~~k~~~v~~d~~e~G~~~~l~~gHt~~Hale~~~~~-~~~HGeavAigm~~~~~la~~~g~~~~~~~~~ 315 (393)
T 1sg6_A 237 EILKARILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVAVSR 315 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----CGGGGGGTTHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhhcchhhhChHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45778888888888888888999999999999999999999998765 79999999999999999999999888889999
Q ss_pred HHHHHHHcCCCCCCCCC----------CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEc--CCCCHHHHHHHHH
Q 013271 376 VHNILQQAKLPTAPPDT----------MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFT--GDYDRKALDDTLY 441 (446)
Q Consensus 376 i~~ll~~lGlP~~~~~~----------i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~--~~~~~~~l~~~l~ 441 (446)
+.++++++|+|+++++. ++.+++.+.|..|||+++|+++|+||++ ||++... .+++++++.++++
T Consensus 316 i~~ll~~~glP~~l~~~gi~~~~~~~~~~~~~~~~~m~~dkk~~~~~~~~vl~~~-iG~~~~~~~~~v~~~~~~~~~~ 392 (393)
T 1sg6_A 316 IVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKKKIVLLSA-IGTPYETRASVVANEDIRVVLA 392 (393)
T ss_dssp HHHHHHHTTCCCSTTCHHHHHHTTTCCCCHHHHHHHHHTCCE-------ECCEEE-TTEESSSSCEECCHHHHHHHCC
T ss_pred HHHHHHHcCCCccchhhccccccccccCCHHHHHHHhhhcccccCCeEEEEEEcc-cCcEEEeCCCCCCHHHHHHHhc
Confidence 99999999999999863 4889999999999999999999999998 9999764 5799999988763
No 8
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=100.00 E-value=3.4e-47 Score=390.62 Aligned_cols=327 Identities=16% Similarity=0.156 Sum_probs=248.0
Q ss_pred EEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH---HHHHHHHHHhcCCCCeeEEEEEeCCCCCCC
Q 013271 84 IVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL---YLDKVTDALTRGNPNVSVENVILPDGENYK 159 (446)
Q Consensus 84 ~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~---~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~ 159 (446)
++.+. .|++|+||+|++++ +++++++ +.+|++||||+++.+. +.+++.+.|++.|+ ++.+|+++++||
T Consensus 5 ~~~~~---~p~~i~~G~g~~~~l~~~l~~~-g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~----~~~~~~~~~~~p 76 (387)
T 3bfj_A 5 MFDYL---VPNVNFFGPNAISVVGERCQLL-GGKKALLVTDKGLRAIKDGAVDKTLHYLREAGI----EVAIFDGVEPNP 76 (387)
T ss_dssp CEEEE---CCSEEEESTTGGGGHHHHHHHT-TCSEEEEECCTTTC--CCSSHHHHHHHHHHTTC----EEEEECCCCSSC
T ss_pred ceeee---CCCeEEECCCHHHHHHHHHHHc-CCCEEEEEECcchhhccchHHHHHHHHHHHcCC----eEEEECCccCCC
Confidence 35554 46899999999999 9998875 3599999999999988 89999999999884 346789999999
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh---------hc-------CCCeEEEEcCCcCcccccccc
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---------YL-------RGVSFIQIPTTVMAQVDSSVG 223 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~---------~~-------~g~p~i~IPTTl~A~tds~v~ 223 (446)
++++++++++.++++++| +||||||||++|+||++|+. |. +++|+|+|||| ++|||+++
T Consensus 77 ~~~~v~~~~~~~~~~~~d---~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT--~gtgSevt 151 (387)
T 3bfj_A 77 KDTNVRDGLAVFRREQCD---IIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTT--AGTASEVT 151 (387)
T ss_dssp BHHHHHHHHHHHHHTTCC---EEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECS--TTCCGGGC
T ss_pred CHHHHHHHHHHHHhcCCC---EEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCC--CCcccccc
Confidence 999999999999999998 99999999999999999987 54 79999999999 57899999
Q ss_pred CeEEEeeCCc--ccccc-cccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHH
Q 013271 224 GKTGINHRLG--KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFA 299 (446)
Q Consensus 224 ~k~~i~~~~~--K~~ig-~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~ 299 (446)
++++|+.+.. |+.++ .++.|+.+|+||+++.++|++++++|++|+|+|++ |.|++.......+.++... +.+.
T Consensus 152 ~~avi~~~~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~hai---E~~~s~~~~~~~d~~a~~ai~~i~ 228 (387)
T 3bfj_A 152 RHCVLTNTETKVKFVIVSWRNLPSVSINDPLLMIGKPAALTAATGMDALTHAV---EAYISKDANPVTDAAAMQAIRLIA 228 (387)
T ss_dssp SEEEEEETTTTEEEEEECGGGSCSEEEECGGGTTTCCHHHHHHHHHHHHHHHH---HHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCceeeccCCccccCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999998644 88777 57899999999999999999999999999999999 7777654333333332110 1222
Q ss_pred HHHHHHHHhhHhHhh-----cchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHH------------H
Q 013271 300 YAIKRSCENKAEVVS-----LDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMA------------V 359 (446)
Q Consensus 300 ~~i~~s~~~~~~~v~-----~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~------------~ 359 (446)
+.+.+++++..+.-. .....+|+.. .++++|+|+|+++.. | +++||++||++|+.. .
T Consensus 229 ~~l~~~v~d~~d~~ar~~~~~as~laG~a~~~~g~~~~Hai~h~l~~~--~-~i~HG~avai~lp~v~~~~~~~~~~~~~ 305 (387)
T 3bfj_A 229 RNLRQAVALGSNLQAREYMAYASLLAGMAFNNANLGYVHAMAHQLGGL--Y-DMPHGVANAVLLPHVARYNLIANPEKFA 305 (387)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHGGGCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHccCcHHHHHhhhHHhcC--c-CCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 233333332111111 1122344431 234668888888765 4 799999999999985 5
Q ss_pred HHHHHcCCC---------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcC
Q 013271 360 DMSYRLGWI---------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTG 429 (446)
Q Consensus 360 ~la~~~g~~---------~~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~ 429 (446)
++++.+|.. .++.++++.++++++|+|+++++. ++++++.+......+. +. ..+++ .
T Consensus 306 ~la~~lg~~~~~~~~~~~~~~~~~~i~~l~~~~glp~~l~~~gi~~~~~~~~a~~a~~~--~~--------~~~np---~ 372 (387)
T 3bfj_A 306 DIAELMGENITGLSTLDAAEKAIAAITRLSMDIGIPQHLRDLGVKETDFPYMAEMALKD--GN--------AFSNP---R 372 (387)
T ss_dssp HHHHHTTCCCTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGGTCCGGGHHHHHHHHHHS--GG--------GTTCS---S
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhC--cc--------ccCCC---C
Confidence 677777754 145689999999999999999875 8888876655544331 11 01211 4
Q ss_pred CCCHHHHHHHHHH
Q 013271 430 DYDRKALDDTLYA 442 (446)
Q Consensus 430 ~~~~~~l~~~l~~ 442 (446)
.++++++.+.|++
T Consensus 373 ~~~~~~i~~i~~~ 385 (387)
T 3bfj_A 373 KGNEQEIAAIFRQ 385 (387)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7889999998865
No 9
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=100.00 E-value=5.7e-47 Score=388.80 Aligned_cols=323 Identities=19% Similarity=0.212 Sum_probs=250.5
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.|++|+||+|++++ ++++++. +.+|++||||+++.+. +.+++.+.|++.|+ .+.+|+++++||++++++++++
T Consensus 8 ~p~~i~~G~g~~~~l~~~l~~~-g~~~~livtd~~~~~~g~~~~v~~~L~~~g~----~~~~~~~~~~~p~~~~v~~~~~ 82 (386)
T 1rrm_A 8 LNETAWFGRGAVGALTDEVKRR-GYQKALIVTDKTLVQCGVVAKVTDKMDAAGL----AWAIYDGVVPNPTITVVKEGLG 82 (386)
T ss_dssp CCSEEEESTTGGGGHHHHHHHH-TCCEEEEECBHHHHHTTHHHHHHHHHHHTTC----EEEEECBCCSSCBHHHHHHHHH
T ss_pred CCceEEECcCHHHHHHHHHHHc-CCCEEEEEECcchhhchHHHHHHHHHHHcCC----eEEEECCccCCCCHHHHHHHHH
Confidence 46899999999999 9988876 3689999999999888 99999999999884 3457899999999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhh------------------cCCCeEEEEcCCcCccccccccCeEEEeeC
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASY------------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHR 231 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~------------------~~g~p~i~IPTTl~A~tds~v~~k~~i~~~ 231 (446)
.++++++| +||||||||++|+||++|+.+ .+++|+|+|||| ++|||+++++++|+.+
T Consensus 83 ~~~~~~~d---~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT--~gtgSevt~~avi~~~ 157 (386)
T 1rrm_A 83 VFQNSGAD---YLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTT--AGTAAEVTINYVITDE 157 (386)
T ss_dssp HHHHHTCS---EEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECS--SSCCTTTCSEEEEEET
T ss_pred HHHhcCcC---EEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCC--CCchhhhCCcEEEEeC
Confidence 99999998 999999999999999999988 679999999999 5689999999999986
Q ss_pred Cc--ccccc-cccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHH
Q 013271 232 LG--KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCE 307 (446)
Q Consensus 232 ~~--K~~ig-~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~ 307 (446)
.. |+.++ .++.|+.+|+||+++.++|++++++|++|+|+|++ |.||+.......+.++... +.+.+.+.+++.
T Consensus 158 ~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---E~~~s~~~~~~~d~~a~~a~~~i~~~l~~~~~ 234 (386)
T 1rrm_A 158 EKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAI---EGYITRGAWALTDALHIKAIEIIAGALRGSVA 234 (386)
T ss_dssp TTTEEEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHH---HHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCeeEeecCCccccCEEEEChhhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 88777 57899999999999999999999999999999999 7887644333333332211 222333333332
Q ss_pred hh---HhHhhcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHH------------HHHHHHcCCC-
Q 013271 308 NK---AEVVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMA------------VDMSYRLGWI- 368 (446)
Q Consensus 308 ~~---~~~v~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~------------~~la~~~g~~- 368 (446)
.- .+.+......+|+.. .++++|+|+|+|+.. | +++||++||++|+.. .++++.+|..
T Consensus 235 ~d~~ar~~~~~as~laG~a~~~~g~g~~H~i~h~l~~~--~-~i~HG~avai~lp~~~~~~~~~~~~~~~~la~~~g~~~ 311 (386)
T 1rrm_A 235 GDKDAGEEMALGQYVAGMGFSNVGLGLVHGMAHPLGAF--Y-NTPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKV 311 (386)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHTTCCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHccCcHHHHHhccHHhcC--c-CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCCC
Confidence 00 001111123346631 245679999999987 5 799999999999986 4677777753
Q ss_pred --------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHH
Q 013271 369 --------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDT 439 (446)
Q Consensus 369 --------~~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~ 439 (446)
.++.++++.++++++|+|+++++. ++++++.+......+. ... .++ -..++++++.+.
T Consensus 312 ~~~~~~~~~~~~~~~i~~l~~~lglp~~l~~~gi~~~~~~~~a~~a~~~--~~~--------~~n---p~~~~~~~i~~i 378 (386)
T 1rrm_A 312 EGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDD--VCT--------GGN---PREATLEDIVEL 378 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTTCCSSGGGGTCCGGGHHHHHHHHHTC--GGG--------GGC---SSCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCCHHhcCCCHHHHHHHHHHHHhc--ccc--------cCC---CCCCCHHHHHHH
Confidence 135689999999999999999875 8888887665554331 110 111 147889999988
Q ss_pred HHHH
Q 013271 440 LYAF 443 (446)
Q Consensus 440 l~~~ 443 (446)
+++-
T Consensus 379 ~~~~ 382 (386)
T 1rrm_A 379 YHTA 382 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 10
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=100.00 E-value=2.8e-47 Score=386.80 Aligned_cols=314 Identities=16% Similarity=0.215 Sum_probs=244.4
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
.|++|+||+|++++ ++++++. +.+|++||||+++.+.+.+++.+.|++.|+ ++. ++.. +++|++++++++ +.
T Consensus 11 ~p~~i~~G~g~~~~l~~~l~~~-g~~~~livtd~~~~~~~~~~v~~~L~~~g~--~~~--~~~~-~~~~~~~~v~~~-~~ 83 (354)
T 3ce9_A 11 IPLILEVGNNKIYNIGQIIKKG-NFKRVSLYFGEGIYELFGETIEKSIKSSNI--EIE--AVET-VKNIDFDEIGTN-AF 83 (354)
T ss_dssp CCSEEEEESSCGGGHHHHHGGG-TCSEEEEEEETTHHHHHHHHHHHHHHTTTC--EEE--EEEE-ECCCBHHHHHHH-HT
T ss_pred CCcEEEECCCHHHHHHHHHHhc-CCCeEEEEECccHHHHHHHHHHHHHHHcCC--eEE--EEec-CCCCCHHHHHHH-HH
Confidence 56899999999999 9998876 358999999999998899999999999884 433 3333 578899999999 99
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccccCceEEEEeh
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDT 250 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~~P~~viiDp 250 (446)
+++.++| +||||||||++|+||++| +.+++|+|+|||| +++||+++++++|+..++|+.++ ++.|+.||+||
T Consensus 84 ~~~~~~d---~IIavGGGsv~D~aK~vA--~~~~~p~i~IPTT--~~tgse~t~~avi~~~~~K~~i~-~~~P~~vi~Dp 155 (354)
T 3ce9_A 84 KIPAEVD---ALIGIGGGKAIDAVKYMA--FLRKLPFISVPTS--TSNDGFSSPVASLLINGKRTSVP-AKTPDGIVVDI 155 (354)
T ss_dssp TSCTTCC---EEEEEESHHHHHHHHHHH--HHHTCCEEEEESC--CSSGGGTSSEEEEEETTEEEEEE-CCCCSEEEEEH
T ss_pred hhhcCCC---EEEEECChHHHHHHHHHH--hhcCCCEEEecCc--ccCCCCCCCceEEEeCCceeeec-CCCCcEEEEcH
Confidence 9888887 999999999999999997 6799999999999 45799999999999888888875 89999999999
Q ss_pred HhhccCCHHHHHhHHHHHHHHhh-ccchhHHHHHHhhh-hHhhcCCHHHHHHHHHHHHHhh-HhHhh---------cchh
Q 013271 251 DTLNTLPDRELASGLAEVIKYGL-IRDAEFFEWQEQNM-HKLMARDPRAFAYAIKRSCENK-AEVVS---------LDEK 318 (446)
Q Consensus 251 ~ll~tlP~~~~~sG~~Dalkha~-~~D~~~~~~l~~~~-~~~~~~~~~~l~~~i~~s~~~~-~~~v~---------~d~~ 318 (446)
+++.|+|++++++|++|+|.|+. +.|+.+++++.+.. .+. .+.+.+...+.+..+ ...+. ....
T Consensus 156 ~ll~tlP~~~~~~g~~Dal~h~~~~~d~~~~~~~~~~~~~~~----~~~la~~~~~~i~~~l~~~~~~~~~~~~~l~a~~ 231 (354)
T 3ce9_A 156 DVIKGSPEKFIYSGIGDLVSNITALYDWKFEEENHKSIIDDF----AVMISKKSVNSFVRTDFKSIKDEVFLKELVDSLT 231 (354)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHH----HHHHHHHHHHHHHHCCCSCTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCHH----HHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999996655 46777777664321 111 123333333333222 11111 1122
Q ss_pred hhhhHh--------hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCC
Q 013271 319 ESGLRA--------TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPP 390 (446)
Q Consensus 319 ~~G~r~--------~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~ 390 (446)
.+|+.. .++++|+|+|+||..+++ +++||++||+|+.+..+++. +..+++.++++++|+|++++
T Consensus 232 ~aG~a~~~~g~~r~~~g~~H~i~hal~~~~~~-~~~HG~avai~~~~~~~~~~-------~~~~~i~~l~~~~glP~~l~ 303 (354)
T 3ce9_A 232 MNGIAMEIAGNSSPASGAEHLISHALDKFLPN-PQLHGIQVGVATYIMSKVHK-------HREERIKKILSDTGFFNYVK 303 (354)
T ss_dssp HHHHHHHHHTSSTTTCSHHHHHHHHHHHHCSS-CCCHHHHHHHHHHHHHHHHT-------SSHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHhhcCCCCcccchHHHHhHHHHhCCCC-CCCcHHHHHHHHHHHHHHcc-------ccHHHHHHHHHHCCCCCCHH
Confidence 334321 125789999999987554 79999999999877666652 24689999999999999888
Q ss_pred CC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 391 DT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 391 ~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
+. ++++++.+.+..++|+++++ ++++. | ..++++++.+.+++
T Consensus 304 ~~gi~~~~~~~~~~~~~~~~~~~--~~~~~-p-------~~~~~~~~~~i~~~ 346 (354)
T 3ce9_A 304 GLNMKKSDFKRAISEAHLIKPAR--YTYLH-V-------EKNCETAKEIVDTD 346 (354)
T ss_dssp TTCCCHHHHHHHHHHHHHHSTTS--CCGGG-S-------HHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHhccCc--eeecC-C-------CCCCHHHHHHHHHh
Confidence 74 89999999999999988665 33333 2 25678888888764
No 11
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=100.00 E-value=1.2e-44 Score=369.63 Aligned_cols=316 Identities=22% Similarity=0.280 Sum_probs=239.3
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
.|++|+||+|++++ ++++++. ++|++||||+++.+.+.+++.+.|++.|+ ++.+ .++++|+ +.++++++++.
T Consensus 9 ~p~~i~~G~g~~~~l~~~l~~~--g~~~livtd~~~~~~~~~~v~~~L~~~g~--~~~~-~~~~ge~--~~~~v~~~~~~ 81 (370)
T 1jq5_A 9 SPAKYVQGKNVITKIANYLEGI--GNKTVVIADEIVWKIAGHTIVNELKKGNI--AAEE-VVFSGEA--SRNEVERIANI 81 (370)
T ss_dssp CCSEEEEETTGGGGHHHHHTTT--CSEEEEEECHHHHHHTHHHHHHHHHTTTC--EEEE-EECCSSC--BHHHHHHHHHH
T ss_pred CCCeEEECcCHHHHHHHHHHHc--CCeEEEEEChHHHHHHHHHHHHHHHHcCC--eEEE-EeeCCCC--CHHHHHHHHHH
Confidence 46889999999999 9988875 49999999999988889999999999884 4433 3455654 77999999999
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCccccccccc--CceEEEE
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY--QPQCVLV 248 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~--~P~~vii 248 (446)
++++++| +||||||||++|+||++| +.+++|+|+|||| |+|||+++++++|+.+.+|+..+.++ .|+.||+
T Consensus 82 ~~~~~~d---~IIavGGGsv~D~aK~iA--~~~~~p~i~IPTT--a~tgSevt~~avi~~~~~~~k~~~~~~~~P~~vii 154 (370)
T 1jq5_A 82 ARKAEAA---IVIGVGGGKTLDTAKAVA--DELDAYIVIVPTA--ASTDAPTSALSVIYSDDGVFESYRFYKKNPDLVLV 154 (370)
T ss_dssp HHHTTCS---EEEEEESHHHHHHHHHHH--HHHTCEEEEEESS--CCSSCTTCSEEEEECTTSCEEEEEECSSCCSEEEE
T ss_pred HHhcCCC---EEEEeCChHHHHHHHHHH--HhcCCCEEEeccc--cCCCcccCCeEEEEcCCCceEeeccCCCCCeEEEE
Confidence 9999998 999999999999999997 6789999999999 89999999999999988887666664 8999999
Q ss_pred ehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhh----------HhhcCCH-HHHHHHHHHHHH-hhHhHhhcc
Q 013271 249 DTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMH----------KLMARDP-RAFAYAIKRSCE-NKAEVVSLD 316 (446)
Q Consensus 249 Dp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~----------~~~~~~~-~~l~~~i~~s~~-~~~~~v~~d 316 (446)
||+++.|+|++++++|++|+|+|++ |.|++....... +.++... +.+.+.+.+++. .+...+..+
T Consensus 155 Dp~ll~tlP~~~~a~g~~Dal~h~~---E~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~~~k~~~~~~a 231 (370)
T 1jq5_A 155 DTKIIANAPPRLLASGIADALATWV---EARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPA 231 (370)
T ss_dssp EHHHHHTSCHHHHHHHHHHHHHHHH---HHHHHHHHTCCCTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred ChHHHHhCCHHHHHHHHHHHHHHHH---HHHHhhhcCCcccccccccHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHH
Confidence 9999999999999999999999999 777764422111 1111000 111111111110 111111111
Q ss_pred --------hhhhhhHhhcCcchhhhhhhhhccC-----CCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 013271 317 --------EKESGLRATLNLGHTFGHAIETGFG-----YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQA 383 (446)
Q Consensus 317 --------~~~~G~r~~l~~gHti~Hale~~~~-----~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~l 383 (446)
..++|+ +.+|+||+++|+|+..++ +.+++||++||+|++..+.++ ..+.+.++++.++++++
T Consensus 232 r~~~~~a~~~~aG~-a~~n~g~~~~Hai~~~l~~~~~~~~~i~HG~ava~g~~~~~~~~----~~~~~~~~~i~~l~~~~ 306 (370)
T 1jq5_A 232 LEAVVEANTLLSGL-GFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALE----EHSQQEIERYIELYLCL 306 (370)
T ss_dssp HHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHGGGSCSGGGGSCHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHH-HhhccccHHHHHHhhHhhccccCCCCCCcHHHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHc
Confidence 136788 578999999999998752 337999999999998877663 23577899999999999
Q ss_pred CCCCCCCCC-CC---HHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 384 KLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 384 GlP~~~~~~-i~---~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
|+|+++++. ++ ++++ +..++|..... .. +|+ -..++++++.+.+++
T Consensus 307 glP~~l~~~gi~~~~~~~~---~~~a~~a~~~~------~~-~~~---p~~~~~~~i~~il~~ 356 (370)
T 1jq5_A 307 DLPVTLEDIKLKDASREDI---LKVAKAATAEG------ET-IHN---AFNVTADDVADAIFA 356 (370)
T ss_dssp TCCCSTTTTTCTTCCHHHH---HHHHHHHTSTT------CG-GGG---TCCCCHHHHHHHHHH
T ss_pred CCCCCHHHcCCCcccHHHH---HHHHHHHhCcc------hh-hhC---CCCCCHHHHHHHHHH
Confidence 999999874 55 5554 44555543221 11 454 257899999998864
No 12
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=100.00 E-value=1.7e-44 Score=373.07 Aligned_cols=333 Identities=16% Similarity=0.204 Sum_probs=248.2
Q ss_pred CCeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCC-chhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCC
Q 013271 81 APTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNT-VAPL-YLDKVTDALTRGNPNVSVENVILPDGEN 157 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~-v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~ 157 (446)
-|.++++. .|.+|+||+|++++ ++++++. +.+|++||||+. +.+. +.+++.+.|++.|+ + +.+|+++++
T Consensus 12 ~~~~f~~~---~p~~i~~G~g~l~~l~~~l~~~-g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~--~--~~~f~~v~~ 83 (407)
T 1vlj_A 12 HMENFVFH---NPTKIVFGRGTIPKIGEEIKNA-GIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGI--E--WVEVSGVKP 83 (407)
T ss_dssp CCCCEEEC---CCCEEEESTTCGGGHHHHHHHT-TCCEEEEEECSSHHHHSSHHHHHHHHHHHTTC--E--EEEECCCCS
T ss_pred ccCCceEe---cCCeEEECcCHHHHHHHHHHHc-CCCeEEEEECchHHhhccHHHHHHHHHHHcCC--e--EEEecCccC
Confidence 57788886 55789999999999 9998875 348999999955 4444 89999999999884 3 457899999
Q ss_pred CCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh----------------cCCCeEEEEcCCcCcccccc
Q 013271 158 YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSS 221 (446)
Q Consensus 158 ~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~----------------~~g~p~i~IPTTl~A~tds~ 221 (446)
||++++|+++++.++++++| +||||||||++|+||++|+.+ .+++|+|+|||| ++|||+
T Consensus 84 ~p~~~~v~~~~~~~~~~~~D---~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT--agtgSe 158 (407)
T 1vlj_A 84 NPVLSKVHEAVEVAKKEKVE---AVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTI--SATGTE 158 (407)
T ss_dssp SCBHHHHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECS--CSSCGG
T ss_pred CCCHHHHHHHHHHHHhcCCC---EEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCC--CCcchh
Confidence 99999999999999999998 999999999999999999875 279999999999 678999
Q ss_pred ccCeEEEeeCC--cccccc-cccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HH
Q 013271 222 VGGKTGINHRL--GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RA 297 (446)
Q Consensus 222 v~~k~~i~~~~--~K~~ig-~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~ 297 (446)
++++++|+.+. .|+.++ .++.|+.+|+||+++.++|++++++|++|+|+|++ |.|++.......+.++... +.
T Consensus 159 vt~~avi~~~~~~~K~~i~~~~~~P~~ai~Dp~l~~tlP~~~~aag~~Dal~hai---E~~~s~~~~~~~d~~a~~ai~~ 235 (407)
T 1vlj_A 159 MNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHIL---EYYFDGSSPEISNEIAEGTIRT 235 (407)
T ss_dssp GSSEEEEEETTTTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHH---HHHTSSCCCHHHHHHHHHHHHH
T ss_pred hcCeEEEEECCCCeEEEecCCCccceEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999764 477775 57899999999999999999999999999999999 7776542111222222111 22
Q ss_pred HHHHHHHHHHhhHhHhhc-----chhhhhhHhhcC--------cchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH----
Q 013271 298 FAYAIKRSCENKAEVVSL-----DEKESGLRATLN--------LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD---- 360 (446)
Q Consensus 298 l~~~i~~s~~~~~~~v~~-----d~~~~G~r~~l~--------~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~---- 360 (446)
+.+.+.+++.+..+...+ ....+|+. ++| .+|+|+|+|+.. | +++||++||++|+.+++
T Consensus 236 i~~~l~~a~~d~~d~~aR~~m~~as~lag~a-~~~~g~~~~~~~~Hai~h~l~~~--~-~i~HG~a~ai~lp~v~~~~~~ 311 (407)
T 1vlj_A 236 IMKMTERLIEKPDDYEARANLAWSATIALNG-TMAVGRRGGEWACHRIEHSLSAL--Y-DIAHGAGLAIVFPAWMKYVYR 311 (407)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTSS-TTTTTSCSCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHhcCCCCCcchhHHHhhHHHhC--c-CCChHHHHHHHHHHHHHHhhh
Confidence 233333444322111111 11223332 222 459999999987 5 79999999999987633
Q ss_pred --------HHHH-cCCCC------HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhh-----cCCceEEEeec
Q 013271 361 --------MSYR-LGWID------DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKV-----ADGLLRLILLK 419 (446)
Q Consensus 361 --------la~~-~g~~~------~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~-----~~g~~~~vll~ 419 (446)
++.. +|... ++.++++.++++++|+|+++++. ++++++.+......+. |++. ..
T Consensus 312 ~~~~~~~~la~~~~g~~~~~~~~~~~~~~~i~~l~~~lglP~~l~elgi~~~~i~~~a~~a~~~~~~~~rp~~-~~---- 386 (407)
T 1vlj_A 312 KNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKG-AS---- 386 (407)
T ss_dssp GSHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTTCCCSTGGGTCCGGGHHHHHHHHHHHHHHTTGGGT-CC----
T ss_pred hcHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhhhhhcccccc-cc----
Confidence 4443 45432 45679999999999999999875 8888877665554432 2211 00
Q ss_pred CCCCceeEcCCCCHHHHHHHHHHH
Q 013271 420 GPLGNCVFTGDYDRKALDDTLYAF 443 (446)
Q Consensus 420 ~~iG~~~~~~~~~~~~l~~~l~~~ 443 (446)
.+. -..++++++.+.|++-
T Consensus 387 --~~n---p~~~t~e~i~~i~~~~ 405 (407)
T 1vlj_A 387 --LGR---IMVLEREDVREILKLA 405 (407)
T ss_dssp --SCS---SSCCCHHHHHHHHHHT
T ss_pred --cCC---CCCCCHHHHHHHHHHH
Confidence 111 1478899999998753
No 13
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=100.00 E-value=1.3e-44 Score=371.11 Aligned_cols=329 Identities=16% Similarity=0.191 Sum_probs=251.2
Q ss_pred CeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCC
Q 013271 82 PTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYK 159 (446)
Q Consensus 82 ~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~ 159 (446)
|.++.+. .|.+|+||+|++++ +++++++ +.+|++||||+++.+. +.+++.+.|++.|+ ++.+|+++++||
T Consensus 1 M~~f~f~---~p~~i~~G~g~~~~l~~~~~~~-g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi----~~~~~~~v~~~p 72 (383)
T 3ox4_A 1 MASSTFY---IPFVNEMGEGSLEKAIKDLNGS-GFKNALIVSDAFMNKSGVVKQVADLLKAQGI----NSAVYDGVMPNP 72 (383)
T ss_dssp -CCEEEE---CCSEEEESTTHHHHHHHTTTTS-CCCEEEEEEEHHHHHTTHHHHHHHHHHTTTC----EEEEEEEECSSC
T ss_pred CCCceec---CCCeEEECCCHHHHHHHHHHHc-CCCEEEEEECCchhhCchHHHHHHHHHHcCC----eEEEECCccCCC
Confidence 4556666 56889999999999 9999876 4689999999998887 89999999999984 345678899999
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh----------------cCCCeEEEEcCCcCcccccccc
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVG 223 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~----------------~~g~p~i~IPTTl~A~tds~v~ 223 (446)
++++++++++.++++++| +||||||||++|+||++|+.+ ++++|+|+|||| ++|||+++
T Consensus 73 ~~~~v~~~~~~~~~~~~D---~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT--agtgSe~t 147 (383)
T 3ox4_A 73 TVTAVLEGLKILKDNNSD---FVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTT--AGTASEMT 147 (383)
T ss_dssp BHHHHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECS--SSCCTTTC
T ss_pred CHHHHHHHHHHHHhcCcC---EEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCC--CCchhhcC
Confidence 999999999999999999 999999999999999999887 679999999999 67899999
Q ss_pred CeEEEeeCC--ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHH
Q 013271 224 GKTGINHRL--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFA 299 (446)
Q Consensus 224 ~k~~i~~~~--~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~ 299 (446)
+.++++.+. .|+.+ +.++.|+.+|+||+++.++|++++++|++|+|+|++ |.|++.......+.++... +.+.
T Consensus 148 ~~avi~~~~~~~K~~i~~~~~~P~~~i~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~~~~~td~~a~~ai~~i~ 224 (383)
T 3ox4_A 148 RFCIITDEVRHVKMAIVDRHVTPMVSVNDPLLMVGMPKGLTAATGMDALTHAF---EAYSSTAATPITDACALKAASMIA 224 (383)
T ss_dssp SEEEEEETTTTEEEEEECGGGSCSEEEECGGGTTTCCHHHHHHHHHHHHHHHH---HHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCeEEeecCCCccceEEEECcHHhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999998754 46654 467899999999999999999999999999999999 7887633223333333221 2334
Q ss_pred HHHHHHHHhhHhHhh-----cchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH-----------
Q 013271 300 YAIKRSCENKAEVVS-----LDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD----------- 360 (446)
Q Consensus 300 ~~i~~s~~~~~~~v~-----~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~----------- 360 (446)
+.+.+++++..+..+ .....+|+.. .++..|.++|+|+.. | +++||+++|+.++..++
T Consensus 225 ~~l~~a~~~~~d~~ar~~m~~as~laG~a~~~~g~g~~Hai~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~ 301 (383)
T 3ox4_A 225 KNLKTACDNGKDMPAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGY--Y-NLPHGVCNAVLLPHVLAYNASVVAGRLK 301 (383)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--S-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcccchhHHHhhhHHhcC--c-CCChHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455555544322211 1234455542 345669999999876 5 89999999998887653
Q ss_pred -HHHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcC
Q 013271 361 -MSYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTG 429 (446)
Q Consensus 361 -la~~~g~~----~-----~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~ 429 (446)
+++.+|.- + ++.++++.+|++++|+|+++.+. ++++++.+.....-+ ++. +...| .
T Consensus 302 ~la~~~g~~~~~~~~~~~a~~~i~~~~~l~~~lglP~~L~~~gi~~~~i~~ia~~a~~--~~~----~~~np-------~ 368 (383)
T 3ox4_A 302 DVGVAMGLDIANLGDKEGAEATIQAVRDLAASIGIPANLTELGAKKEDVPLLADHALK--DAC----ALTNP-------R 368 (383)
T ss_dssp HHHHHTTCSCTTSCHHHHHHHHHHHHHHHHHHTTCCSSSTTTTCCGGGHHHHHHHHTT--SGG----GGGCS-------S
T ss_pred HHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHh--ccc----ccCCC-------C
Confidence 44555532 1 23568999999999999999986 888887665444322 111 01112 4
Q ss_pred CCCHHHHHHHHHH
Q 013271 430 DYDRKALDDTLYA 442 (446)
Q Consensus 430 ~~~~~~l~~~l~~ 442 (446)
.++++++.+.|++
T Consensus 369 ~~t~~di~~i~~~ 381 (383)
T 3ox4_A 369 QGDQKEVEELFLS 381 (383)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7889999998864
No 14
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=100.00 E-value=3.2e-44 Score=371.06 Aligned_cols=326 Identities=17% Similarity=0.212 Sum_probs=236.3
Q ss_pred CCeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCC
Q 013271 81 APTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGEN 157 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~ 157 (446)
.|.++.+. .|++|+||+|++++ +++++ . ++|++||||+...+. +.+++.+.|+ |+ + +.+|+++|+
T Consensus 21 ~m~~~~~~---~p~~i~~G~g~l~~l~~~l~-~--g~r~liVtd~~~~~~~g~~~~v~~~L~--g~--~--~~~f~~v~~ 88 (408)
T 1oj7_A 21 GLNNFNLH---TPTRILFGKGAIAGLREQIP-H--DARVLITYGGGSVKKTGVLDQVLDALK--GM--D--VLEFGGIEP 88 (408)
T ss_dssp CCCCEEEE---EEEEEEESTTGGGGHHHHSC-T--TCEEEEEECSSHHHHHSHHHHHHHHTT--TS--E--EEEECCCCS
T ss_pred hhhceeec---CCCeEEECCCHHHHHHHHHh-c--CCEEEEEECCchhhhccHHHHHHHHhC--CC--E--EEEeCCcCC
Confidence 34445554 46899999999999 88887 4 489999999885554 8999999997 63 3 467899999
Q ss_pred CCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhc-------------------CCCeEEEEcCCcCccc
Q 013271 158 YKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-------------------RGVSFIQIPTTVMAQV 218 (446)
Q Consensus 158 ~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~-------------------~g~p~i~IPTTl~A~t 218 (446)
||++++++++++.++++++| +||||||||++|+||++|+.+. +++|+|+|||| ++|
T Consensus 89 ~p~~~~v~~~~~~~~~~~~D---~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTT--agt 163 (408)
T 1oj7_A 89 NPAYETLMNAVKLVREQKVT---FLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTL--PAT 163 (408)
T ss_dssp SCBHHHHHHHHHHHHHHTCC---EEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESS--CSS
T ss_pred CcCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCC--Cch
Confidence 99999999999999999998 9999999999999999998754 78999999999 678
Q ss_pred cccccCeEEEeeCCc--ccccc-cccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHH-HHhhhhHhhcCC
Q 013271 219 DSSVGGKTGINHRLG--KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEW-QEQNMHKLMARD 294 (446)
Q Consensus 219 ds~v~~k~~i~~~~~--K~~ig-~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~-l~~~~~~~~~~~ 294 (446)
||+++++++|+.+.+ |+.+. .++.|+.+|+||+++.++|++++++|++|+|+|++ |.|+++ ......+.++..
T Consensus 164 gSevt~~avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~tlP~~~~aag~~Dal~hai---Ea~~s~~~~~~~~d~~a~~ 240 (408)
T 1oj7_A 164 GSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTV---EQYVTKPVDAKIHDRFAEG 240 (408)
T ss_dssp CGGGSSEEEEEETTTTEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHH---HHHSSSCBCCHHHHHHHHH
T ss_pred hHHhCCCEEEEECCCCeEEEeeCCCcCccEEEECchhhcCCCHHHHHhHHHHHHHHHH---HHHhcCCCCCHHHHHHHHH
Confidence 999999999998755 55554 35799999999999999999999999999999999 666652 111122222211
Q ss_pred H-HHHHHHHHHHHHhhHhHhh-----cchhhhhhHhhcCcc-------hhhhhhhhhccCCCCCCcHHhhhhhHHHH---
Q 013271 295 P-RAFAYAIKRSCENKAEVVS-----LDEKESGLRATLNLG-------HTFGHAIETGFGYGQWLHGEAVAAGMVMA--- 358 (446)
Q Consensus 295 ~-~~l~~~i~~s~~~~~~~v~-----~d~~~~G~r~~l~~g-------Hti~Hale~~~~~~~i~HGeaVAig~~~~--- 358 (446)
. +.+.+.+.+++++..+... .....+|+ +++|+| |+++|+++.. + +++||++||++|+..
T Consensus 241 ai~~i~~~l~~av~d~~d~~ar~~~~~as~lag~-a~~~~G~~~~~~~Hai~h~l~~~--~-~i~HG~avai~lp~v~~~ 316 (408)
T 1oj7_A 241 ILLTLIEDGPKALKEPENYDVRANVMWAATQALN-GLIGAGVPQDWATHMLGHELTAM--H-GLDHAQTLAIVLPALWNE 316 (408)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSS-STTTTTSCCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHhccCCCCCCchhhhhhHHHhc--c-CCChHHhHHHHHHHHHHH
Confidence 0 1222223333322111100 01112222 244555 6666666554 4 799999999999875
Q ss_pred ---------HHHHHH-cCCC-------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecC
Q 013271 359 ---------VDMSYR-LGWI-------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKG 420 (446)
Q Consensus 359 ---------~~la~~-~g~~-------~~~~~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~ 420 (446)
.+++.+ +|.. .++.++++.++++++|+|+++++. ++++++.+......+. +... ...
T Consensus 317 ~~~~~~~~~~~la~~~~g~~~~~~~~~~~~~~~~i~~l~~~lglP~~l~~lgi~~~~i~~~a~~a~~~--~~~~---~~~ 391 (408)
T 1oj7_A 317 KRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEH--GMTQ---LGE 391 (408)
T ss_dssp TTTTTHHHHHHHHHHHHCCCCSCHHHHHHHHHHHHHHHHHHHTCCCSGGGGTCCSTTHHHHHHHHHHT--TCSS---BTT
T ss_pred HhhhCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhc--cccc---cCC
Confidence 355554 3654 245789999999999999999875 8888876655544432 1100 011
Q ss_pred CCCceeEcCCCCHHHHHHHHHH
Q 013271 421 PLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 421 ~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
| ..++++++.+.+++
T Consensus 392 p-------~~~t~~~i~~il~~ 406 (408)
T 1oj7_A 392 N-------HDITLDVSRRIYEA 406 (408)
T ss_dssp T-------TCBCHHHHHHHHHH
T ss_pred C-------CCCCHHHHHHHHHH
Confidence 2 47789999998865
No 15
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=100.00 E-value=1.9e-44 Score=368.35 Aligned_cols=312 Identities=17% Similarity=0.217 Sum_probs=239.2
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 168 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~ 168 (446)
.|++|+||+|++++ ++++++. ++|++||||+++.+. +.+++.+.|++.|+ .+.+|+++|+||+++++++++
T Consensus 18 ~p~~i~~G~g~~~~l~~~l~~~--g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~----~~~~~~~~~~~p~~~~v~~~~ 91 (371)
T 1o2d_A 18 MPTDVFFGEKILEKRGNIIDLL--GKRALVVTGKSSSKKNGSLDDLKKLLDETEI----SYEIFDEVEENPSFDNVMKAV 91 (371)
T ss_dssp CCCEEEESTTHHHHHGGGGGGT--CSEEEEEEESSGGGTSSHHHHHHHHHHHTTC----EEEEEEEECSSCBHHHHHHHH
T ss_pred CCceEEECcCHHHHHHHHHHHc--CCEEEEEECchHHhhccHHHHHHHHHHHcCC----eEEEeCCccCCCCHHHHHHHH
Confidence 57899999999999 8888874 499999999977765 88999999999884 346778899999999999999
Q ss_pred HHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhc----------------CCCeEEEEcCCcCccccccccCeEEEe-eC
Q 013271 169 DKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGGKTGIN-HR 231 (446)
Q Consensus 169 ~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~----------------~g~p~i~IPTTl~A~tds~v~~k~~i~-~~ 231 (446)
+.++++++| +||||||||++|+||++|+.+. +++|+|+|||| ++|||++++.+++. ..
T Consensus 92 ~~~~~~~~d---~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT--agtgse~t~~avi~~~~ 166 (371)
T 1o2d_A 92 ERYRNDSFD---FVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTT--AGTGSEVTPYSILTDPE 166 (371)
T ss_dssp HHHTTSCCS---EEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECS--SCCCGGGCCEEEEECTT
T ss_pred HHHHhcCCC---EEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCC--CchhhhhcCceEEEcCC
Confidence 999999888 9999999999999999999876 79999999999 78999999999988 33
Q ss_pred CcccccccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHh
Q 013271 232 LGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAE 311 (446)
Q Consensus 232 ~~K~~ig~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~ 311 (446)
+.|..+. ++.|+.+|+||+++.++|++++++|++|+|+|++ +.||++......+.++ ....+++.++++.
T Consensus 167 g~K~~i~-~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---E~~~s~~~~~~~d~~a---~~a~~li~~~l~~--- 236 (371)
T 1o2d_A 167 GNKRGCT-LMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAV---EGYLSRKSTPPSDALA---IEAMKIIHRNLPK--- 236 (371)
T ss_dssp SCEEEEE-CCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHH---HHHHSTTCCHHHHHHH---HHHHHHHHHHHHH---
T ss_pred CeeEeee-cccCCEEEECchhhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHH---HHHHHHHHHHHHH---
Confidence 4566666 8899999999999999999999999999999999 6777654433333332 1233555555542
Q ss_pred Hhhcch----------hhhhhHhhcCcchhhhhhhhhccC-CCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHH-----HH
Q 013271 312 VVSLDE----------KESGLRATLNLGHTFGHAIETGFG-YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIV-----KR 375 (446)
Q Consensus 312 ~v~~d~----------~~~G~r~~l~~gHti~Hale~~~~-~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~-----~~ 375 (446)
.+..|+ ..+|+. .+|+||+++|+|+..++ +.+++||++||++|+..+++....+....+.+ ++
T Consensus 237 ~v~~d~~aR~~~~~as~laG~a-~~n~G~~~~Hai~h~l~~~~~i~HG~a~ai~l~~~~~~~~~~~~~~~~~~a~~l~~~ 315 (371)
T 1o2d_A 237 AIEGNREARKKMFVASCLAGMV-IAQTGTTLAHALGYPLTTEKGIKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIFGGS 315 (371)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTTC
T ss_pred HHHcCHHHHHHHHHHHHHHHHH-HHccCchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Confidence 222222 234553 67888888888886542 23799999999999999887655431111223 45
Q ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHH---hHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHH
Q 013271 376 VHNILQQAKLPTAPPDTMTVEMFKSIMAV---DKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 443 (446)
Q Consensus 376 i~~ll~~lGlP~~~~~~i~~e~~~~~l~~---dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~ 443 (446)
+.++++++|+|+.+. ++++++.+.... |++..+ .| ..++++++.+.+++.
T Consensus 316 l~~~l~~lglp~~~g--i~~~~~~~la~~a~~d~~~~~---------~p-------~~~~~~~i~~il~~~ 368 (371)
T 1o2d_A 316 LLKFLKELGLYEKVA--VSSEELEKWVEKGSRAKHLKN---------TP-------GTFTPEKIRNIYREA 368 (371)
T ss_dssp HHHHHHHTTCCCCCC--CCHHHHHHHHHHHTTCGGGGG---------SS-------SCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCC--CCHHHHHHHHHHHHhcccccC---------CC-------CCCCHHHHHHHHHHH
Confidence 678999999997643 667666544333 322211 12 477899999988754
No 16
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=100.00 E-value=2.4e-43 Score=358.34 Aligned_cols=323 Identities=18% Similarity=0.190 Sum_probs=244.5
Q ss_pred CCeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCC
Q 013271 81 APTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYK 159 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~ 159 (446)
+|.++.++. .|++|+||+|++++ +++++++ +.+|++||||+.+.. +.+++.+.|++.+ +.+|+++++||
T Consensus 4 ~M~~f~~~~--~p~~i~~G~g~~~~l~~~l~~~-g~~r~liVtd~~~~~-~~~~v~~~L~~~~------~~~f~~v~~~p 73 (358)
T 3jzd_A 4 SSQPFIYEA--HAARVVFGAGSSSQVAAEVERL-GAKRALVLCTPNQQA-EAERIADLLGPLS------AGVYAGAVMHV 73 (358)
T ss_dssp -CCCEEEEE--CCEEEEESTTGGGGHHHHHHHT-TCSCEEEECCGGGHH-HHHHHHHHHGGGE------EEEECCCCTTC
T ss_pred CccCceeec--CCceEEECCCHHHHHHHHHHHh-CCCeEEEEeCCcHHH-HHHHHHHHhccCC------EEEecCCcCCC
Confidence 366677741 35899999999999 9999886 468999999998765 5899999998753 35678999999
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCccccc-c
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLI-G 238 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~i-g 238 (446)
+.++++++++.++++++| +||||||||++|+||++|. .+++|+|+|||| + +||++++..+++..+.|+.+ +
T Consensus 74 ~~~~v~~~~~~~~~~~~D---~IIavGGGsviD~aK~iA~--~~~~p~i~IPTT--~-tgSevt~~~v~~~~~~K~~~~~ 145 (358)
T 3jzd_A 74 PIESARDATARAREAGAD---CAVAVGGGSTTGLGKAIAL--ETGMPIVAIPTT--Y-AGSEVTPVYGLTEAGTKRTGRD 145 (358)
T ss_dssp BHHHHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHH--HHCCCEEEEECS--S-CCGGGCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHhhccCCC---EEEEeCCcHHHHHHHHHHh--ccCCCEEEEeCC--c-cccccccceEEcCCCeeEeecc
Confidence 999999999999999999 9999999999999999975 689999999999 4 58999987776655568755 5
Q ss_pred cccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhhHhHhhc--
Q 013271 239 AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENKAEVVSL-- 315 (446)
Q Consensus 239 ~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~~~~v~~-- 315 (446)
.++.|+.+|+||+++.++|++++++|++|+|+|++ |.|++......++.++... +.+.+.+.+++.+..+...+
T Consensus 146 ~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~~~~~td~~a~~ai~~i~~~l~~a~~~~~d~~aR~~ 222 (358)
T 3jzd_A 146 PRVLPRTVIYDPALTVGLPRGLSVTSALNAIAHAA---EGLYARDANPVMSLMAEEGIRALAAGIPAVFNDPADLDARSQ 222 (358)
T ss_dssp GGGSCSEEEECGGGGTTSCHHHHHHHHHHHHHHHH---HHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcCCcEEEEChHHHcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 77899999999999999999999999999999999 7777543222333333221 23344455555443322221
Q ss_pred ---chhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHH------------HHHHcCCCCHHHHHHHH
Q 013271 316 ---DEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGWIDDSIVKRVH 377 (446)
Q Consensus 316 ---d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~------------la~~~g~~~~~~~~~i~ 377 (446)
....+|+.. .++..|.++|+|+.. | +++||+++|+.++..++ +++.+|.-+.+.++++.
T Consensus 223 m~~as~laG~a~~~~g~g~~Hai~h~lg~~--~-~i~HG~~~aillp~v~~~~~~~~~~~~~~~a~~lg~~~~~~~~~i~ 299 (358)
T 3jzd_A 223 CLYGAWLCGTVLGGVGMALHHKLCHTLGGS--F-NLPHAETHTIVLPHALAYNAAAVPEAMARIRRATGAGEQSAAATLF 299 (358)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhhcc--c-CCchhHhHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCchHHHHHHH
Confidence 233455542 245569999999886 4 89999999999987653 45555643223578999
Q ss_pred HHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 378 NILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 378 ~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
+|++++|+|+++.+. ++++++.+.....-+. . .+++ ..++++++.+.|++
T Consensus 300 ~l~~~lglP~~L~e~Gi~~~~i~~~a~~a~~~---~---------~~np---~~~~~~di~~i~~~ 350 (358)
T 3jzd_A 300 DLAQRHGAPVALRDIGMREEDLDRAADIALAS---P---------YWNP---RPIEREPIRALLQA 350 (358)
T ss_dssp HHHHHTTCCCCGGGGTCCGGGHHHHHHHHTTS---C---------CCCS---SCCCHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhc---c---------cCCC---CCCCHHHHHHHHHH
Confidence 999999999999985 8988876654443221 1 1221 47889999998864
No 17
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=7.1e-43 Score=354.39 Aligned_cols=319 Identities=14% Similarity=0.126 Sum_probs=239.9
Q ss_pred CeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCc
Q 013271 82 PTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN 160 (446)
Q Consensus 82 ~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t 160 (446)
|.++.++ ..|++|+||+|++++ +++++++ +.+|++||||+.... +.+++.+.|++.+ +.+|+++++||+
T Consensus 3 M~~F~~~--~~p~~i~~G~g~~~~l~~~l~~~-g~~r~liVtd~~~~~-~~~~v~~~L~~~~------~~v~~~v~~~p~ 72 (353)
T 3hl0_A 3 MQPFVYM--AAPARIVFSAGSSADVAEEIRRL-GLSRALVLSTPQQKG-DAEALASRLGRLA------AGVFSEAAMHTP 72 (353)
T ss_dssp CCCCCCC--CCCCCEEECTTGGGGHHHHHHHT-TCCCEEEECCGGGHH-HHHHHHHHHGGGE------EEEECCCCTTCB
T ss_pred ccceeee--cCCceEEECcCHHHHHHHHHHHh-CCCEEEEEecCchhh-HHHHHHHHHhhCC------cEEecCcCCCCc
Confidence 4444442 246889999999999 9999886 358999999998654 6899999998754 245788999999
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCccc-cccc
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKN-LIGA 239 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~-~ig~ 239 (446)
.++++++++.++++++| +||||||||++|+||++|. .+++|+|+|||| + +||++++.++++..+.|+ +.+.
T Consensus 73 ~~~v~~~~~~~~~~~~D---~IIavGGGs~iD~aK~iA~--~~~~p~i~IPTT--a-tgSe~t~~~v~~~~~~K~~~~~~ 144 (353)
T 3hl0_A 73 VEVTKTAVEAYRAAGAD---CVVSLGGGSTTGLGKAIAL--RTDAAQIVIPTT--Y-AGSEVTPILGQTENGVKTTMRGP 144 (353)
T ss_dssp HHHHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHH--HHCCEEEEEECS--S-CCGGGCCEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhccCCC---EEEEeCCcHHHHHHHHHHh--ccCCCEEEEeCC--c-hhhhccCceEEcCCCeeEeeecC
Confidence 99999999999999999 9999999999999999976 689999999999 4 689999877776555565 4567
Q ss_pred ccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhhHhHhh----
Q 013271 240 FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENKAEVVS---- 314 (446)
Q Consensus 240 ~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~~~~v~---- 314 (446)
++.|+.+|+||+++.++|++++++|++|+|+|++ |.|++.......+.++... +.+.+.+.+++.+..+...
T Consensus 145 ~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~~~~~td~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m 221 (353)
T 3hl0_A 145 EILPEVVIYDAELTLGLPVAISMTSGLNAMAHAA---EALYARDRNPIASMMAVEGLRAMIEALPVVRQAPHDIGARETA 221 (353)
T ss_dssp TTSCSEEEECGGGGTTSCHHHHHHHHHHHHHHHH---HHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcCccEEEEChHHHcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 7899999999999999999999999999999999 7776543222333332221 2334445555544322222
Q ss_pred -cchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHH------------HcCCCCHHHHHHHHH
Q 013271 315 -LDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSY------------RLGWIDDSIVKRVHN 378 (446)
Q Consensus 315 -~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~------------~~g~~~~~~~~~i~~ 378 (446)
.....+|+.. .++..|.++|+|+.. | +++||+++|+.++..+++.. .+|. + .++++.+
T Consensus 222 ~~as~laG~a~~~~g~g~~H~i~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~a~~lg~-~--~~~~i~~ 295 (353)
T 3hl0_A 222 LYGAWLCGTVLGAVGMSLHHKLCHTLGGS--L-DLPHAETHAVLLPHTIAYVEEAAPNLLAPLAALVGG-R--AGAGLFD 295 (353)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHTS-C--HHHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHhhHhhhc--c-CCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCc-H--HHHHHHH
Confidence 1234455542 245569999999887 4 89999999999987765432 2231 1 5789999
Q ss_pred HHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 379 ILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 379 ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
|++++|+|+++.+. ++++++.+.....-+. . .+++ ..++++++.+.|++
T Consensus 296 l~~~lglP~~L~e~Gi~~~~i~~~a~~a~~~---~---------~~np---~~~~~~di~~i~~~ 345 (353)
T 3hl0_A 296 FAARLGAPSSLAALGVGADDLDPMAELATAN---P---------YWCP---RPIEKTAIRDLLQR 345 (353)
T ss_dssp HHHHHTCCCCTGGGTCCGGGHHHHHHHHTTS---C---------CCCS---SCCCHHHHHHHHHH
T ss_pred HHHHcCCCccHHhcCCCHHHHHHHHHHHHhc---c---------cCCC---CCCCHHHHHHHHHH
Confidence 99999999999986 8988876654443221 1 1111 47889999998864
No 18
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=100.00 E-value=4e-42 Score=352.69 Aligned_cols=320 Identities=17% Similarity=0.205 Sum_probs=228.7
Q ss_pred EEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHH
Q 013271 85 VEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDT 163 (446)
Q Consensus 85 ~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~ 163 (446)
+.+. .|++|+||+|++++ +++++++ ++|++||||+++.+.+.+++.+.|++ |+ ++ ++...+++|+.++
T Consensus 26 ~~f~---~p~~i~~G~g~l~~l~~~l~~~--g~r~liVtd~~~~~~~~~~v~~~L~~-g~--~~---~~~~~~~~p~~~~ 94 (387)
T 3uhj_A 26 RAFG---GPNKYIQRAGEIDKLAAYLAPL--GKRALVLIDRVLFDALSERIGKSCGD-SL--DI---RFERFGGECCTSE 94 (387)
T ss_dssp EEEE---CCSEEEECTTTTTTTHHHHGGG--CSEEEEEECTTTHHHHHHHC-------CC--EE---EEEECCSSCSHHH
T ss_pred hHhc---CCCeEEEcCCHHHHHHHHHHHc--CCEEEEEECchHHHHHHHHHHHHHHc-CC--Ce---EEEEcCCCCCHHH
Confidence 4554 56899999999999 9999885 49999999999999899999999999 84 43 2233445679999
Q ss_pred HHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccc--ccc
Q 013271 164 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIG--AFY 241 (446)
Q Consensus 164 v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig--~~~ 241 (446)
++++++.+++.++| +||||||||++|+||++| +.+++|+|+|||| |+|||+++++++|+.+.+|+..+ ..+
T Consensus 95 v~~~~~~~~~~~~d---~IIavGGGs~~D~AK~iA--~~~~~p~i~IPTT--agtgSevt~~avi~~~~~~~k~~~~~~~ 167 (387)
T 3uhj_A 95 IERVRKVAIEHGSD---ILVGVGGGKTADTAKIVA--IDTGARIVIAPTI--ASTDAPCSAIAVRYTEHGVYEEALRLPR 167 (387)
T ss_dssp HHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHH--HHTTCEEEECCSS--CCCSTTTSSEEEEECTTSCEEEEEECSC
T ss_pred HHHHHHHHhhcCCC---EEEEeCCcHHHHHHHHHH--HhcCCCEEEecCc--ccCCcccCCeEEEEcCCCceEeeeecCC
Confidence 99999999999999 999999999999999996 6789999999999 89999999999999877665433 346
Q ss_pred CceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHh-----hcCCH----HHHHHHHHH-------H
Q 013271 242 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKL-----MARDP----RAFAYAIKR-------S 305 (446)
Q Consensus 242 ~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~-----~~~~~----~~l~~~i~~-------s 305 (446)
.|+.+|+||+++.++|++++++|++|+|+|++ |.|++.......+. ..... ....+.+.+ +
T Consensus 168 ~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~a~~~~~~~~~~~~~~~a~~~a~~~~~~l~~~l~~a~~a 244 (387)
T 3uhj_A 168 NPDAVVVDSALVAAAPARFLVAGIGDALSTWF---EARSNIESRTDNYVAGGFPATEAGMAIARHCQDVLTRDAVKAKIA 244 (387)
T ss_dssp CCSEEEECHHHHHTSCHHHHHHHHHHHHHHHH---HHHHHHHHTCCCSSTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEChHHHhhCCHHHHHHHHHHHHHHHH---HHHHHHhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 88877543321111 00000 111122222 2
Q ss_pred HHhhH------hHhhcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHH
Q 013271 306 CENKA------EVVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRV 376 (446)
Q Consensus 306 ~~~~~------~~v~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i 376 (446)
+++.. +++......+|+.. .++..|.++|+|+...+..+++||++||++.+..+.+. ...++.++++
T Consensus 245 ~~~~~~~~Ar~~m~~as~~laG~af~~ag~g~~Hai~h~L~~~~~~~~i~HG~~~a~~~la~~~~~----~~~~~~i~~i 320 (387)
T 3uhj_A 245 VEAGLLTPAVENIIEANTLLSGLGFENCGCSAAHGIHDGLTVLEEVHGYFHGEKVAFGTLCLLMLE----NRDRAEIEAM 320 (387)
T ss_dssp HHTTCCCHHHHHHHHHHTHHHHHHHHHHCCCHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHHT----TCCHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhhhccCcHHHHHhhhhhhcccCcCCCCchHHHHHHHHHHHHhC----CCcHHHHHHH
Confidence 22211 11111124556642 24566888888876533238999999999887766542 1246789999
Q ss_pred HHHHHHcCCCCCCCCC-CC---HHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHH
Q 013271 377 HNILQQAKLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 441 (446)
Q Consensus 377 ~~ll~~lGlP~~~~~~-i~---~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~ 441 (446)
.+|++++|+|+++.+. ++ ++++.+.....-+ ++. .+-..| ..++++++.++++
T Consensus 321 ~~l~~~lglP~~L~elGi~~~~~~~l~~ia~~a~~--~~~---~~~n~P-------~~~t~e~i~~il~ 377 (387)
T 3uhj_A 321 IRFCRSVGLPTKLADLGIVDDVPAKIGRVAEAACR--PGN---IIYATP-------VTITVPAVRDAIL 377 (387)
T ss_dssp HHHHHHHTCCCSGGGGTCCSSHHHHHHHHHHHHTS--TTC---GGGGSS-------SCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHcCCCCCcHHHHHHHHHHHHc--ccc---hhhcCC-------CCCCHHHHHHHHH
Confidence 9999999999999875 77 6776555443322 111 000012 4778888888875
No 19
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-42 Score=360.96 Aligned_cols=317 Identities=20% Similarity=0.251 Sum_probs=229.7
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDK 170 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~ 170 (446)
.|++|+||+|++++ ++++++. +.+|++||||+++.+.+.+++.+.|++.|+ ++.+.+ +++| |+.++++++++.
T Consensus 68 ~p~~i~~G~g~l~~l~~~l~~~-g~~rvlIVtd~~~~~~~~~~v~~~L~~~gi--~~~~~~-~~ge--~~~~~v~~~~~~ 141 (450)
T 1ta9_A 68 SPQKYVQGRHAFTRSYMYVKKW-ATKSAVVLADQNVWNICANKIVDSLSQNGM--TVTKLV-FGGE--ASLVELDKLRKQ 141 (450)
T ss_dssp CCSEEEEETTGGGGHHHHHTTT-CSSEEEEEEEHHHHHHTHHHHHHHHHHTTC--EEEEEE-ECSC--CCHHHHHHHHTT
T ss_pred CCceEEECcCHHHHHHHHHHhc-CCCEEEEEECccHHHHHHHHHHHHHHHCCC--eEEEEe-eCCC--CCHHHHHHHHHH
Confidence 46899999999999 9988875 234999999999988889999999999884 443333 4565 477999999998
Q ss_pred HHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccc--cCceEEEE
Q 013271 171 AIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF--YQPQCVLV 248 (446)
Q Consensus 171 ~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~--~~P~~vii 248 (446)
+++ ++| +||||||||++|+||++| +.+++|+|+|||| |+|||+++++++|+.+.+|+..+.+ +.|+.||+
T Consensus 142 ~~~-~~D---~IIAvGGGSviD~AK~iA--~~~giP~I~IPTT--AgtgSevt~~avI~~~~~~~k~~~~~~~~P~~vii 213 (450)
T 1ta9_A 142 CPD-DTQ---VIIGVGGGKTMDSAKYIA--HSMNLPSIICPTT--ASSDAATSSLSVIYTPDGQFQKYSFYPLNPNLIFI 213 (450)
T ss_dssp SCT-TCC---EEEEEESHHHHHHHHHHH--HHTTCCEEEEESS--CSCSCTTCSEEEEC----CCCEEEECSSCCSEEEE
T ss_pred Hhh-CCC---EEEEeCCcHHHHHHHHHH--HhcCCCEEEEeCC--CccCcccCCceEEEeCCCceEEecccccCCcEEEE
Confidence 887 777 999999999999999997 6799999999999 8999999999999987766655544 58999999
Q ss_pred ehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhh----------HhhcCCH-HHHHHHHHHHHHh-hHhHhhcc
Q 013271 249 DTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMH----------KLMARDP-RAFAYAIKRSCEN-KAEVVSLD 316 (446)
Q Consensus 249 Dp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~----------~~~~~~~-~~l~~~i~~s~~~-~~~~v~~d 316 (446)
||+++.|+|++++++|++|+|+|++ |.|++....... +.++... +.+.+.+.+++.. +...+..+
T Consensus 214 Dp~ll~tlP~~~~aag~~DaL~h~~---E~~~s~~a~~~~l~~~~~~~~a~~~a~~~~~~l~~~l~~a~~~~k~~~~~ea 290 (450)
T 1ta9_A 214 DTDVIVRAPVRFLISGIGDALSTWV---ETESVIRSNSTSFAGGVASIAGRYIARACKDTLEKYALSAILSNTRGVCTEA 290 (450)
T ss_dssp EHHHHHHSCHHHHHHHHHHHHHHHH---HHHHHHHTTCCCTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred chHHHccCCHHHHHHHHHHHHHHHH---HHHhcccCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999999999999999999 777764322111 1110000 1111111121111 11111111
Q ss_pred -------h-hhhhhHhhcCcchhhhhhhhhccC-----CCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 013271 317 -------E-KESGLRATLNLGHTFGHAIETGFG-----YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQA 383 (446)
Q Consensus 317 -------~-~~~G~r~~l~~gHti~Hale~~~~-----~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~l 383 (446)
. .++|+ +.+|+||+++|+|+..++ +.+++||++||+|++..+.++ ..+++.++++.++++++
T Consensus 291 r~~m~~As~~laG~-a~~n~G~~~~Hai~h~l~~~~~~~~~i~HG~avAig~la~~~l~----~~~~~~i~~i~~l~~~l 365 (450)
T 1ta9_A 291 FENVVEANTLMSGL-GFENGGLAAAHAIHNGMTAIHGPVHRLMHGEKVAYGTLVQVVLE----DWPLEDFNNLASFMAKC 365 (450)
T ss_dssp HHHHHHHHHHHHHH-HHHSSCCCHHHHHHHHHGGGCGGGGGSCHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhH-HHhcCCchHHHHHhHHHhccccCcCCCCchHhhHHHHHHHHHhc----cCCHHHHHHHHHHHHHc
Confidence 1 25788 578999999999998742 237999999999998877663 23577899999999999
Q ss_pred CCCCCCCCC-CC---HHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 384 KLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 384 GlP~~~~~~-i~---~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
|+|+++++. ++ ++++.+. +++...+. .. +|. .-.+++++++.+.|++
T Consensus 366 glP~~L~elgi~~~~~~~l~~~---a~~a~~~~------~~-~~~--~p~~~t~edi~~il~~ 416 (450)
T 1ta9_A 366 HLPITLEELGIPNVTDEELLMV---GRATLRPD------ES-IHN--MSKKFNPSQIADAIKA 416 (450)
T ss_dssp TCCCSHHHHTCTTCCHHHHHHH---HHHHTCTT------SG-GGG--SSSCCCHHHHHHHHHH
T ss_pred CCCCCHHHcCCCCCcHHHHHHH---HHHHhhCc------cc-ccC--CCCCCCHHHHHHHHHH
Confidence 999998763 55 6665443 33332221 11 232 1257889999998864
No 20
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=100.00 E-value=1.1e-42 Score=355.89 Aligned_cols=312 Identities=21% Similarity=0.233 Sum_probs=230.5
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHH-HHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLY-LDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~-~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.|++|+||+|++++ ++++++. ++|++||||+++.+.+ .+++.+.|++.| +.+.+ +++| |+.++++++.+
T Consensus 19 ~p~~i~~G~g~l~~l~~~l~~~--g~~~liVtd~~~~~~~~~~~v~~~L~~~g----~~~~~-~~ge--~~~~~v~~~~~ 89 (376)
T 1kq3_A 19 FPGRYVQGAGAINILEEELSRF--GERAFVVIDDFVDKNVLGENFFSSFTKVR----VNKQI-FGGE--CSDEEIERLSG 89 (376)
T ss_dssp CCSEEEEETTGGGGHHHHHHTT--CSEEEEEECHHHHHHTTCTTGGGGCSSSE----EEEEE-CCSS--CBHHHHHHHHT
T ss_pred CCceEEECCCHHHHHHHHHHHc--CCeEEEEECccHHhhccHHHHHHHHHHcC----CeEEE-eCCC--CCHHHHHHHHH
Confidence 56889999999999 9998875 4999999999988885 899999898776 23334 4565 47789999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccc--cCceEEE
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF--YQPQCVL 247 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~--~~P~~vi 247 (446)
.+++ ++| +||||||||++|+||++| +.+++|+|+|||| |+|||+++++++|+.+.+|+..+.+ +.|+.||
T Consensus 90 ~~~~-~~d---~IIavGGGsv~D~aK~iA--~~~~~p~i~IPTT--a~tgSevt~~avi~~~~~~~k~~~~~~~~P~~vi 161 (376)
T 1kq3_A 90 LVEE-ETD---VVVGIGGGKTLDTAKAVA--YKLKKPVVIVPTI--ASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVL 161 (376)
T ss_dssp TCCT-TCC---EEEEEESHHHHHHHHHHH--HHTTCCEEEEESS--CCCSCTTSSEEEEECTTSCEEEEEECSSCCSEEE
T ss_pred HHhc-CCC---EEEEeCCcHHHHHHHHHH--HhcCCCEEEecCc--cccCcccCCeEEEEeCCCCeEeeccCCCCCcEEE
Confidence 8887 777 999999999999999997 6799999999999 8999999999999988777655555 6899999
Q ss_pred EehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcC--C--HHHH----HHHHHHHHH----h-hHhHhh
Q 013271 248 VDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR--D--PRAF----AYAIKRSCE----N-KAEVVS 314 (446)
Q Consensus 248 iDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~--~--~~~l----~~~i~~s~~----~-~~~~v~ 314 (446)
+||+++.++|++++++|++|+|+|++ |.|++....... +... . .+.+ .+.+.+... . +...+.
T Consensus 162 iDp~l~~tlP~~~~aag~~Dal~h~~---E~~~s~~~~~~~-~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~~ 237 (376)
T 1kq3_A 162 VDTEIVAKAPARFLVAGMGDALATWF---EAESCKQKYAPN-MTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVT 237 (376)
T ss_dssp EEHHHHHHSCHHHHHHHHHHHHHHHH---HHHHHHHHTCBC-TTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred EchHHHhhCCHHHHHHHHHHHHHHHH---HHHHhhhcCCcc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999999999 777765432111 0000 0 0111 111211111 0 111111
Q ss_pred cc--------hhhhhhHhhcCcchhhhhhhhhccC----CCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 013271 315 LD--------EKESGLRATLNLGHTFGHAIETGFG----YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQ 382 (446)
Q Consensus 315 ~d--------~~~~G~r~~l~~gHti~Hale~~~~----~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~ 382 (446)
.+ ..++|+ +.+|+||+++|+|+..++ +.+++||++||+|++..+.++ ..+.+.++++.+++++
T Consensus 238 ~ar~~~~~a~~~~aG~-a~~n~g~~~~Hai~~~l~~~~~~~~i~HG~ava~g~~~~~~~~----~~~~~~~~~i~~l~~~ 312 (376)
T 1kq3_A 238 PALEKIVEANTLLSGL-GFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLT----DKPRKMIEEVYSFCEE 312 (376)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHhccchHHHHHHhChhhcccccCCCCcHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHH
Confidence 11 136788 577899999999988753 248999999999998877653 2357789999999999
Q ss_pred cCCCCCCCCC-CC---HHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHH
Q 013271 383 AKLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 441 (446)
Q Consensus 383 lGlP~~~~~~-i~---~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~ 441 (446)
+|+|+++++. ++ ++++.+......+ ++. .+++ .-..++++++.+.|+
T Consensus 313 ~glP~~l~~lgi~~~~~~~~~~~a~~a~~--~~~--------~~~n--~p~~~t~~~i~~il~ 363 (376)
T 1kq3_A 313 VGLPTTLAEIGLDGVSDEDLMKVAEKACD--KNE--------TIHN--EPQPVTSKDVFFALK 363 (376)
T ss_dssp HTCCCSGGGGTCTTCCHHHHHHHHHHHTC--TTS--------GGGG--SSSCCCHHHHHHHHH
T ss_pred cCCCCCHHHcCCCCCCHHHHHHHHHHHhc--ccc--------hhhc--CCCCCCHHHHHHHHH
Confidence 9999999874 65 6776554433322 111 0111 014778889888885
No 21
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=100.00 E-value=2.9e-41 Score=343.69 Aligned_cols=311 Identities=14% Similarity=0.189 Sum_probs=234.1
Q ss_pred CceeEEEccCcC-CC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHH
Q 013271 92 RSYPIYIGSGLL-DH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFD 169 (446)
Q Consensus 92 ~~~~I~~G~g~~-~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~ 169 (446)
.|++|+||+|++ ++ +++++++ +.+|++||||+++.+. .+++.+.|+. +.+|+++++||++++++++++
T Consensus 13 ~P~~i~~G~g~~~~~l~~~l~~~-g~~rvliVtd~~~~~~-~~~v~~~L~~--------~~~f~~v~~~p~~~~v~~~~~ 82 (364)
T 3iv7_A 13 LPQKVMFGYGKSSAFLKQEVERR-GSAKVMVIAGEREMSI-AHKVASEIEV--------AIWHDEVVMHVPIEVAERARA 82 (364)
T ss_dssp CCEEEEEETTCHHHHHHHHHHHH-TCSSEEEECCGGGHHH-HHHHTTTSCC--------SEEECCCCTTCBHHHHHHHHH
T ss_pred CCceEEEeCChHHHHHHHHHHHc-CCCEEEEEECCCHHHH-HHHHHHHcCC--------CEEEcceecCCCHHHHHHHHH
Confidence 468999999987 66 8888886 4689999999987654 5777766651 246789999999999999999
Q ss_pred HHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCccc-ccccccCceEEEE
Q 013271 170 KAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKN-LIGAFYQPQCVLV 248 (446)
Q Consensus 170 ~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~-~ig~~~~P~~vii 248 (446)
.++++++| +||||||||++|+||++|. .+++|+|+|||| + +||++++.++++..+.|+ +.+.++.|+.+|+
T Consensus 83 ~~~~~~~D---~IIavGGGs~iD~aK~iA~--~~~~P~i~IPTT--a-tgSe~t~~avi~~~~~K~~~~~~~~~P~~vi~ 154 (364)
T 3iv7_A 83 VATDNEID---LLVCVGGGSTIGLAKAIAM--TTALPIVAIPTT--Y-AGSEATNVWGLTEAARKTTGVDLKVLPETVIY 154 (364)
T ss_dssp HHHHTTCC---EEEEEESHHHHHHHHHHHH--HHCCCEEEEECS--S-SCGGGCCEEEEEETTEEEEEECGGGSCSEEEE
T ss_pred HHHhcCCC---EEEEeCCcHHHHHHHHHHh--ccCCCEEEEcCC--c-ccccccCeeEecCCCeeEeccCCCcCceEEEE
Confidence 99999999 9999999999999999975 589999999999 4 689999987777655576 4457789999999
Q ss_pred ehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCH-HHHHHHHHHHHHhhHhHhh-----cchhhhhh
Q 013271 249 DTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENKAEVVS-----LDEKESGL 322 (446)
Q Consensus 249 Dp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~-~~l~~~i~~s~~~~~~~v~-----~d~~~~G~ 322 (446)
||+++.++|++++++|++|+|+|++ |.|++.......+.++... +.+.+.+.+++++..+... .....+|+
T Consensus 155 Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~~~~~td~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~As~laG~ 231 (364)
T 3iv7_A 155 DSELTMSLPVEMSVASGLNGLAHCI---DSLWGPNADPINAVLAAEGIRALNQGLPKIVANPHSIEGRDEALYGAYLAAV 231 (364)
T ss_dssp CGGGGTTSCHHHHHHHHHHHHHHHH---HHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHcCCCHHHHHHhHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999 7776533222333332221 2344455555544322222 12344565
Q ss_pred Hh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHH------------HHHcCCCCHHHHHHHHHHHHHcCCCC
Q 013271 323 RA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLGWIDDSIVKRVHNILQQAKLPT 387 (446)
Q Consensus 323 r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~l------------a~~~g~~~~~~~~~i~~ll~~lGlP~ 387 (446)
.. .++..|.++|+|+.. | +++||+++|+.++..+++ ++.+|. ++.++++.+|++++|+|+
T Consensus 232 a~~~~g~g~~Hai~h~lg~~--~-~i~HG~~~aillp~v~~~~~~~~~~~~~~~a~~lg~--~~~~~~i~~l~~~lglP~ 306 (364)
T 3iv7_A 232 SFASAGSGLHHKICHTLGGT--F-NLPHAQTHATVLPYVLAFNAGDAPEAERRAAAAFGT--DTALEGLQRLRLSVNAPK 306 (364)
T ss_dssp HHHHHCCCHHHHHHHHHHHT--S-CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTS--SSHHHHHHHHHHHTTCCC
T ss_pred HhhccCchHHHHHHhHhhhc--c-CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCC--chHHHHHHHHHHHcCCCC
Confidence 32 356679999999986 5 899999999998876543 344443 235789999999999999
Q ss_pred CCCCC-CCHHHHHHHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 388 APPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 388 ~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
++.+. ++++++.+.....-. .. . .+++ ..++++++.+.|++
T Consensus 307 ~L~e~Gi~~~~i~~~a~~a~~---~~----~----~~np---~~~t~~di~~il~~ 348 (364)
T 3iv7_A 307 RLSDYGFEASGIAEAVDVTLE---KV----P----ANNP---RPVTRENLSRLLEA 348 (364)
T ss_dssp CGGGGTCCGGGHHHHHHHHHT---TS----C----TTCS---SCCCHHHHHHHHHH
T ss_pred cHHHcCCCHHHHHHHHHHHHh---hc----c----cCCC---CCCCHHHHHHHHHH
Confidence 99885 888887665544331 11 0 1222 57889999998874
No 22
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=100.00 E-value=2.1e-40 Score=338.41 Aligned_cols=317 Identities=11% Similarity=0.115 Sum_probs=232.3
Q ss_pred CceeEEEccCcCCC-hhHhhhcCC--CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQ--GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF 168 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~--~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~ 168 (446)
.|.+|+||+|++++ ++++++++. .++++||||+.+.+. .+.+.|+..++ ++ .+|+++++||+++++++++
T Consensus 27 ~p~~i~~G~g~l~~l~~~l~~~g~~~~~~~liVtd~~~~~~---~l~~~L~~~g~--~~--~~f~~v~~~pt~~~v~~~~ 99 (375)
T 3rf7_A 27 CVPKMIFGRGSFVQLDTVLEQERTDANDFVVFLVDDVHQHK---PLAARVPNKAH--DL--VIYVNVDDEPTTVQVDELT 99 (375)
T ss_dssp CCSCEEESTTGGGGHHHHHHTTCCSTTCCEEEEEEGGGTTS---HHHHHSCCCTT--SE--EEEECCSSCCBHHHHHHHH
T ss_pred CCCeEEEcCCHHHHHHHHHHHhcccCCCeEEEEECchhhhh---HHHHHHHhcCC--eE--EEEeCCCCCCCHHHHHHHH
Confidence 45789999999999 999987521 378999999987654 46667777774 33 4678999999999999999
Q ss_pred HHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh----------------cCCCeEEEEcCCcCccccccccCeEEEeeCC
Q 013271 169 DKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGKTGINHRL 232 (446)
Q Consensus 169 ~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~----------------~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~ 232 (446)
+.+++++.+|.|+||||||||++|+||++|..+ .+++|+|+|||| ++|||++++.++|+.+.
T Consensus 100 ~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT--agtgSevt~~avit~~~ 177 (375)
T 3rf7_A 100 AQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTV--SGTGAEASRTAVLCGPV 177 (375)
T ss_dssp HHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESS--CSSCTTTCSCCEEECSS
T ss_pred HHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCC--CccchhhCCeEEEEeCC
Confidence 999999955556999999999999999999876 458999999999 67999999999998877
Q ss_pred ccccc-ccccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhh--
Q 013271 233 GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENK-- 309 (446)
Q Consensus 233 ~K~~i-g~~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~-- 309 (446)
+|..+ +.++.|+.+|+||+++.++|++++++|++|+|+|++ |.|++.......+.++ ....+++.+.+...
T Consensus 178 ~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aa~g~Dal~Hai---Eay~s~~~~~~sd~~a---~~ai~li~~~l~~~~~ 251 (375)
T 3rf7_A 178 RKLGLNSDYTVFDQIIMDSELIAGVPTDQWFYTGMDCFIHCV---ESLQGTYLNEFAKAFA---EKSMDLCREVYLDDHP 251 (375)
T ss_dssp CEEEEESGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHH---HHHHSTTCCHHHHHHH---HHHHHHHHHHHTSCCT
T ss_pred CeEEecccccCCCEEEEcHHHHcCCCHHHHHHHHHHHHHHHH---HHHhccCCCHHHHHHH---HHHHHHHHHHHhhcCH
Confidence 77754 567899999999999999999999999999999999 7776532222222221 12234444443321
Q ss_pred --HhHhhcchhhhhhHh---hcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHH--H
Q 013271 310 --AEVVSLDEKESGLRA---TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQ--Q 382 (446)
Q Consensus 310 --~~~v~~d~~~~G~r~---~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~--~ 382 (446)
.+.+......+|+.. .++..|.++|+|+.. + +++||+++|+.++..+++ ..+..+++.++++ +
T Consensus 252 ~ar~~m~~as~laG~a~~~~g~g~~Hai~h~L~~~--~-~i~HG~~~aillp~v~~~-------~~~~~~~~~~~~~~~~ 321 (375)
T 3rf7_A 252 EKDDKLMMASYMGGMSIAYSQVGACHAVSYGLGYV--L-GYHHGIGNCLAFDVLEEF-------YPEGVAEFRKMMEIHN 321 (375)
T ss_dssp THHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHTTCTTT-------SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHhc--c-CCCchhhHHHHHHHHHHh-------CHHHHHHHHHHHHhcC
Confidence 001111233455542 245568899998886 4 799999999887654433 2566899999998 6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhHhhcCCceE--EEeecCCCCceeEcCCCCHHHHHHHHHH
Q 013271 383 AKLPTAPPDTMTVEMFKSIMAVDKKVADGLLR--LILLKGPLGNCVFTGDYDRKALDDTLYA 442 (446)
Q Consensus 383 lGlP~~~~~~i~~e~~~~~l~~dkk~~~g~~~--~vll~~~iG~~~~~~~~~~~~l~~~l~~ 442 (446)
+|+|+++.+.++++++.+.....-+. .++. -+...-| ..++++++++.+++
T Consensus 322 lglP~~L~~gi~~e~l~~~a~~A~~~--~~l~~~~~~~n~P-------r~~t~edi~~i~~~ 374 (375)
T 3rf7_A 322 ITLPKNICKDLPDETIAKMVAVTKSM--GPLWDNVYGKGWE-------EKVTDEMLTKLFRR 374 (375)
T ss_dssp CCCCCCSSTTCCHHHHHHHHHHHHTC--HHHHHHHHCTTCT-------TTSCHHHHHHHHHH
T ss_pred CCCCCchhhCCCHHHHHHHHHHHHhh--hhccccCCCCCCC-------CCCCHHHHHHHHhh
Confidence 99999998778999976655444321 1100 0000001 47899999998875
No 23
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=96.02 E-value=0.038 Score=49.32 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=70.6
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
.++.||++....--+.++....|++-|+.+++ -+.. .+.+.+.+.+..+.+.+.+++ +|||+.|+ ..-+.+
T Consensus 7 ~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev--~V~S---aHR~p~~~~~~~~~a~~~g~~---ViIa~AG~-aa~Lpg 77 (169)
T 3trh_A 7 IFVAILMGSDSDLSTMETAFTELKSLGIPFEA--HILS---AHRTPKETVEFVENADNRGCA---VFIAAAGL-AAHLAG 77 (169)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCCEEE--EECC---TTTSHHHHHHHHHHHHHTTEE---EEEEEECS-SCCHHH
T ss_pred CcEEEEECcHHhHHHHHHHHHHHHHcCCCEEE--EEEc---ccCCHHHHHHHHHHHHhCCCc---EEEEECCh-hhhhHH
Confidence 47899999876555899999999999976543 3433 478999999999999988888 99998888 456888
Q ss_pred HHHHhhcCCCeEEEEcCC
Q 013271 196 YAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTT 213 (446)
.+|+ +...|+|.|||.
T Consensus 78 vvA~--~t~~PVIgVP~~ 93 (169)
T 3trh_A 78 TIAA--HTLKPVIGVPMA 93 (169)
T ss_dssp HHHH--TCSSCEEEEECC
T ss_pred HHHh--cCCCCEEEeecC
Confidence 8865 578999999987
No 24
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=95.97 E-value=0.048 Score=48.55 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=69.3
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
.++.||++....--+.++....|++-|+.++ .-+.. .+.+.+.+.+..+.+.+.+++ +||++.|+. .-+.+
T Consensus 6 p~V~IimgS~SD~~v~~~a~~~l~~~gi~~e--v~V~S---aHRtp~~l~~~~~~~~~~g~~---ViIa~AG~a-a~Lpg 76 (166)
T 3oow_A 6 VQVGVIMGSKSDWSTMKECCDILDNLGIGYE--CEVVS---AHRTPDKMFDYAETAKERGLK---VIIAGAGGA-AHLPG 76 (166)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHTTCEEE--EEECC---TTTCHHHHHHHHHHTTTTTCC---EEEEEECSS-CCHHH
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEE--EEEEc---CcCCHHHHHHHHHHHHhCCCc---EEEEECCcc-hhhHH
Confidence 3688999987655589999999999996443 33433 478999999999988888887 999988884 56788
Q ss_pred HHHHhhcCCCeEEEEcCC
Q 013271 196 YAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTT 213 (446)
.+|+ +...|+|.|||.
T Consensus 77 vvA~--~t~~PVIgVP~~ 92 (166)
T 3oow_A 77 MVAA--KTTLPVLGVPVK 92 (166)
T ss_dssp HHHH--TCSSCEEEEECC
T ss_pred HHHh--ccCCCEEEeecC
Confidence 8865 578999999997
No 25
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=95.79 E-value=0.047 Score=48.95 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=71.3
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 194 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~a 194 (446)
..++.||++....--+.++....|++-|+.+++ -+.. .+.+.+.+.+..+.+.+.+++ +|||+.|+ ..-+.
T Consensus 7 ~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev--~V~S---aHR~p~~~~~~~~~a~~~g~~---ViIa~AG~-aa~Lp 77 (174)
T 3lp6_A 7 RPRVGVIMGSDSDWPVMADAAAALAEFDIPAEV--RVVS---AHRTPEAMFSYARGAAARGLE---VIIAGAGG-AAHLP 77 (174)
T ss_dssp CCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEE--EECC---TTTCHHHHHHHHHHHHHHTCC---EEEEEEES-SCCHH
T ss_pred CCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEE--EEEC---CCCCHHHHHHHHHHHHhCCCC---EEEEecCc-hhhhH
Confidence 356899999876555899999999999975543 3433 488999999999999999998 99998877 45688
Q ss_pred HHHHHhhcCCCeEEEEcCC
Q 013271 195 GYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 195 K~iAa~~~~g~p~i~IPTT 213 (446)
+.+|+ +...|+|.|||.
T Consensus 78 gvvA~--~t~~PVIgVP~~ 94 (174)
T 3lp6_A 78 GMVAA--ATPLPVIGVPVP 94 (174)
T ss_dssp HHHHH--HCSSCEEEEEEC
T ss_pred HHHHh--ccCCCEEEeeCC
Confidence 88865 478999999987
No 26
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=95.78 E-value=0.025 Score=51.03 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=69.8
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
.++.||++....--+.++....|++-|+.+++ -+.. .+.+.+.+.+..+.+.+.|++ +|||+.|| ..-+.+
T Consensus 22 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv--~V~S---aHR~p~~l~~~~~~a~~~g~~---ViIa~AG~-aa~Lpg 92 (182)
T 1u11_A 22 PVVGIIMGSQSDWETMRHADALLTELEIPHET--LIVS---AHRTPDRLADYARTAAERGLN---VIIAGAGG-AAHLPG 92 (182)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEE--EECC---TTTCHHHHHHHHHHTTTTTCC---EEEEEEES-SCCHHH
T ss_pred CEEEEEECcHHHHHHHHHHHHHHHHcCCCeEE--EEEc---ccCCHHHHHHHHHHHHhCCCc---EEEEecCc-hhhhHH
Confidence 46999999876555899999999999976543 3433 478999999999888888888 99998887 566888
Q ss_pred HHHHhhcCCCeEEEEcCC
Q 013271 196 YAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTT 213 (446)
.+|+ +...|+|.|||.
T Consensus 93 vvA~--~t~~PVIgVP~~ 108 (182)
T 1u11_A 93 MCAA--WTRLPVLGVPVE 108 (182)
T ss_dssp HHHH--HCSSCEEEEEEC
T ss_pred HHHh--ccCCCEEEeeCC
Confidence 8865 478999999997
No 27
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=95.75 E-value=0.043 Score=48.73 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=69.9
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
.++.||++....--+.++....|++-|+.+++ -+.. .+.+.+.+.+..+.+.+.+++ +||++.|+ ..-+.+
T Consensus 4 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev--~V~S---aHR~p~~~~~~~~~a~~~g~~---ViIa~AG~-aa~Lpg 74 (163)
T 3ors_A 4 MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEK--QVVS---AHRTPKMMVQFASEARERGIN---IIIAGAGG-AAHLPG 74 (163)
T ss_dssp CCEEEEESCGGGHHHHHHHHHHHHHTTCCEEE--EECC---TTTSHHHHHHHHHHTTTTTCC---EEEEEEES-SCCHHH
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEE--EEEC---CcCCHHHHHHHHHHHHhCCCc---EEEEECCc-hhhhHH
Confidence 46899999876555899999999999976543 3433 478999999999988888888 99998877 456888
Q ss_pred HHHHhhcCCCeEEEEcCC
Q 013271 196 YAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTT 213 (446)
.+|+ +...|+|.|||.
T Consensus 75 vvA~--~t~~PVIgVP~~ 90 (163)
T 3ors_A 75 MVAS--LTTLPVIGVPIE 90 (163)
T ss_dssp HHHH--HCSSCEEEEEEC
T ss_pred HHHh--ccCCCEEEeeCC
Confidence 8865 478999999987
No 28
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=95.64 E-value=0.039 Score=49.46 Aligned_cols=87 Identities=22% Similarity=0.257 Sum_probs=69.8
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
.++.||++....--+.++....|++-|+.+++ -+.. .+.+.+.+.+..+.+.+.+++ +||++.|+ ..-+.+
T Consensus 13 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev--~V~S---aHR~p~~~~~~~~~a~~~g~~---ViIa~AG~-aa~Lpg 83 (174)
T 3kuu_A 13 VKIAIVMGSKSDWATMQFAADVLTTLNVPFHV--EVVS---AHRTPDRLFSFAEQAEANGLH---VIIAGNGG-AAHLPG 83 (174)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEE--EECC---TTTCHHHHHHHHHHTTTTTCS---EEEEEEES-SCCHHH
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEE--EEEc---ccCCHHHHHHHHHHHHhCCCc---EEEEECCh-hhhhHH
Confidence 46999999876555899999999999976543 3433 478999999999988888888 99998877 456888
Q ss_pred HHHHhhcCCCeEEEEcCC
Q 013271 196 YAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTT 213 (446)
.+|+ +...|+|.|||.
T Consensus 84 vvA~--~t~~PVIgVP~~ 99 (174)
T 3kuu_A 84 MLAA--KTLVPVLGVPVQ 99 (174)
T ss_dssp HHHH--TCSSCEEEEEEC
T ss_pred HHHh--ccCCCEEEeeCC
Confidence 8865 578999999987
No 29
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=95.48 E-value=0.051 Score=48.51 Aligned_cols=87 Identities=21% Similarity=0.215 Sum_probs=69.4
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
.++.||++....--+.++....|++-|+++++ -+.. .+.+.+.+.+..+.+.+.|++ +|||+.|+ ..-+.+
T Consensus 12 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv--~V~S---aHR~p~~l~~~~~~a~~~g~~---ViIa~AG~-aa~Lpg 82 (170)
T 1xmp_A 12 SLVGVIMGSTSDWETMKYACDILDELNIPYEK--KVVS---AHRTPDYMFEYAETARERGLK---VIIAGAGG-AAHLPG 82 (170)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEE--EECC---TTTSHHHHHHHHHHTTTTTCC---EEEEEEES-SCCHHH
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEE--EEEe---ccCCHHHHHHHHHHHHhCCCc---EEEEECCc-hhhhHH
Confidence 46889999876555899999999999976543 3433 478999999999888888888 99998887 456888
Q ss_pred HHHHhhcCCCeEEEEcCC
Q 013271 196 YAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTT 213 (446)
.+|+ +...|+|.|||.
T Consensus 83 vvA~--~t~~PVIgVP~~ 98 (170)
T 1xmp_A 83 MVAA--KTNLPVIGVPVQ 98 (170)
T ss_dssp HHHT--TCCSCEEEEEEC
T ss_pred HHHh--ccCCCEEEeeCC
Confidence 8865 578999999997
No 30
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=95.47 E-value=0.099 Score=46.26 Aligned_cols=87 Identities=11% Similarity=0.171 Sum_probs=68.0
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHc-CCCCcceEEEEcCccHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIGDMC 194 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~-~~dr~~~IIAiGGGsv~D~a 194 (446)
.++.||++....--+.++....|++-|+.++ .-+.. .+.+.+.+.+..+.+.+. +++ +|||+.|+ ..-+.
T Consensus 3 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~e--v~V~s---aHR~p~~~~~~~~~a~~~~~~~---ViIa~AG~-aa~Lp 73 (159)
T 3rg8_A 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYA--IRIGS---AHKTAEHVVSMLKEYEALDRPK---LYITIAGR-SNALS 73 (159)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHHHHTTCEEE--EEECC---TTTCHHHHHHHHHHHHTSCSCE---EEEEECCS-SCCHH
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEE--EEEEc---ccCCHHHHHHHHHHhhhcCCCc---EEEEECCc-hhhhH
Confidence 3688999987655589999999999997544 33433 478999999999888764 577 99998887 45678
Q ss_pred HHHHHhhcCCCeEEEEcCC
Q 013271 195 GYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 195 K~iAa~~~~g~p~i~IPTT 213 (446)
+.+|+ +...|+|.|||.
T Consensus 74 gvvA~--~t~~PVIgVP~~ 90 (159)
T 3rg8_A 74 GFVDG--FVKGATIACPPP 90 (159)
T ss_dssp HHHHH--HSSSCEEECCCC
T ss_pred HHHHh--ccCCCEEEeeCC
Confidence 88865 478999999987
No 31
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=95.45 E-value=0.073 Score=48.05 Aligned_cols=88 Identities=15% Similarity=0.242 Sum_probs=69.9
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 194 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~a 194 (446)
-..+.||++....--+.++....|++-|++++ .-+.. .+.+.+.+.+..+.+.+.+++ +|||+.|+ ..-+.
T Consensus 13 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~d--v~V~S---aHR~p~~l~~~~~~a~~~g~~---ViIa~AG~-aa~Lp 83 (183)
T 1o4v_A 13 VPRVGIIMGSDSDLPVMKQAAEILEEFGIDYE--ITIVS---AHRTPDRMFEYAKNAEERGIE---VIIAGAGG-AAHLP 83 (183)
T ss_dssp -CEEEEEESCGGGHHHHHHHHHHHHHTTCEEE--EEECC---TTTCHHHHHHHHHHTTTTTCC---EEEEEEES-SCCHH
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHHcCCCeE--EEEEc---ccCCHHHHHHHHHHHHhCCCc---EEEEecCc-ccccH
Confidence 35788999987655589999999999996543 33433 478999999999988888888 99998887 56688
Q ss_pred HHHHHhhcCCCeEEEEcCC
Q 013271 195 GYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 195 K~iAa~~~~g~p~i~IPTT 213 (446)
+.+|+ ....|+|.|||.
T Consensus 84 gvvA~--~t~~PVIgVP~~ 100 (183)
T 1o4v_A 84 GMVAS--ITHLPVIGVPVK 100 (183)
T ss_dssp HHHHH--HCSSCEEEEEEC
T ss_pred HHHHh--ccCCCEEEeeCC
Confidence 88865 478999999997
No 32
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=95.41 E-value=0.075 Score=47.53 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=70.1
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
-++.||++....--..++....|++-|++|++ .+.. .+.+.+.+.+..+.+.+.|++ +|||+=|| ..-+.+
T Consensus 13 P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev--~V~s---aHR~p~~l~~~~~~a~~~g~~---ViIa~AG~-aahLpg 83 (173)
T 4grd_A 13 PLVGVLMGSSSDWDVMKHAVAILQEFGVPYEA--KVVS---AHRMPDEMFDYAEKARERGLR---AIIAGAGG-AAHLPG 83 (173)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEE--EECC---TTTSHHHHHHHHHHHTTTTCS---EEEEEEES-SCCHHH
T ss_pred CeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEE--EEEc---cccCHHHHHHHHHHHHhcCCe---EEEEeccc-cccchh
Confidence 46999999876555899999999999976543 3433 478999999999998888888 88887777 567888
Q ss_pred HHHHhhcCCCeEEEEcCC
Q 013271 196 YAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTT 213 (446)
.+|+ ...+|+|.|||.
T Consensus 84 vvA~--~t~~PVIgVPv~ 99 (173)
T 4grd_A 84 MLAA--KTTVPVLGVPVA 99 (173)
T ss_dssp HHHH--HCCSCEEEEEEC
T ss_pred hhee--cCCCCEEEEEcC
Confidence 8865 478999999987
No 33
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=94.56 E-value=0.16 Score=45.73 Aligned_cols=86 Identities=21% Similarity=0.217 Sum_probs=68.4
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
.|-||.+....--..++..+.|++-||+|++ .+.. .+.+.+.+.+..+.+.+.|++ +|||.=|| ...+.+.
T Consensus 24 ~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~--~V~S---AHRtp~~l~~~~~~a~~~g~~---ViIa~AG~-aahLpGv 94 (181)
T 4b4k_A 24 LVGVIMGSTSDWETMKYACDILDELNIPYEK--KVVS---AHRTPDYMFEYAETARERGLK---VIIAGAGG-AAHLPGM 94 (181)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTTCCEEE--EECC---TTTSHHHHHHHHHHTTTTTCC---EEEEEECS-SCCHHHH
T ss_pred cEEEEECCHhHHHHHHHHHHHHHHcCCCeeE--EEEc---cccChHHHHHHHHHHHhcCce---EEEEeccc-cccchhh
Confidence 3778998876545889999999999976543 4444 478999999999988888888 99988777 4567788
Q ss_pred HHHhhcCCCeEEEEcCC
Q 013271 197 AAASYLRGVSFIQIPTT 213 (446)
Q Consensus 197 iAa~~~~g~p~i~IPTT 213 (446)
+|+ ...+|+|.||+-
T Consensus 95 vAa--~T~~PVIGVPv~ 109 (181)
T 4b4k_A 95 VAA--KTNLPVIGVPVQ 109 (181)
T ss_dssp HHT--TCCSCEEEEECC
T ss_pred HHh--cCCCCEEEEecC
Confidence 865 578999999996
No 34
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=94.00 E-value=0.24 Score=50.61 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=69.6
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCC-CCcceEEEEcCccHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRL-DRRCTFVALGGGVIGDMC 194 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~-dr~~~IIAiGGGsv~D~a 194 (446)
.++.||+++...--+.++....|+.-|+.+++ -+.. .|.+.+.+.+..+.+.+.|+ + +|||+.|+ ..-+.
T Consensus 266 ~~V~Ii~gs~SD~~~~~~a~~~l~~~gi~~~v--~V~s---aHR~p~~~~~~~~~~~~~g~~~---viIa~AG~-~a~Lp 336 (425)
T 2h31_A 266 CRVVVLMGSTSDLGHCEKIKKACGNFGIPCEL--RVTS---AHKGPDETLRIKAEYEGDGIPT---VFVAVAGR-SNGLG 336 (425)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCCEEE--EECC---TTTCHHHHHHHHHHHHTTCCCE---EEEEECCS-SCCHH
T ss_pred CeEEEEecCcccHHHHHHHHHHHHHcCCceEE--eeee---ccCCHHHHHHHHHHHHHCCCCe---EEEEEcCc-ccchH
Confidence 47999999876555899999999999975543 3433 47899999999999888887 6 88888877 56678
Q ss_pred HHHHHhhcCCCeEEEEcCC
Q 013271 195 GYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 195 K~iAa~~~~g~p~i~IPTT 213 (446)
+.+|+ ....|+|.|||.
T Consensus 337 gvva~--~t~~PVIgvP~~ 353 (425)
T 2h31_A 337 PVMSG--NTAYPVISCPPL 353 (425)
T ss_dssp HHHHH--HCSSCEEECCCC
T ss_pred hHHhc--cCCCCEEEeeCc
Confidence 88865 478999999985
No 35
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=93.53 E-value=0.34 Score=47.63 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=57.3
Q ss_pred CCEEEEEECCCchh-HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHH
Q 013271 115 GKKVLVVTNNTVAP-LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGD 192 (446)
Q Consensus 115 ~k~vliVtd~~v~~-~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D 192 (446)
-+|++||.++.... ...+++.+.|.+.|+ ++.+.. . ..+ . ...++.+.+...++| .||++|| |++..
T Consensus 29 ~~~~~vi~Np~sg~~~~~~~i~~~l~~~g~--~~~~~~-t-~~~--~--~~~~~~~~~~~~~~d---~vvv~GGDGTl~~ 97 (332)
T 2bon_A 29 FPASLLILNGKSTDNLPLREAIMLLREEGM--TIHVRV-T-WEK--G--DAARYVEEARKFGVA---TVIAGGGDGTINE 97 (332)
T ss_dssp -CCEEEEECSSSTTCHHHHHHHHHHHTTTC--CEEEEE-C-CST--T--HHHHHHHHHHHHTCS---EEEEEESHHHHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHcCC--cEEEEE-e-cCc--c--hHHHHHHHHHhcCCC---EEEEEccchHHHH
Confidence 36788888876543 356778889999985 433222 1 111 1 223444445556777 8999988 89999
Q ss_pred HHHHHHHhh-cCCCeEEEEcCC
Q 013271 193 MCGYAAASY-LRGVSFIQIPTT 213 (446)
Q Consensus 193 ~aK~iAa~~-~~g~p~i~IPTT 213 (446)
++..++... ..++|+..||.-
T Consensus 98 v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 98 VSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHHCCSSCCCEEEEEECS
T ss_pred HHHHHhhcccCCCCeEEEecCc
Confidence 988775321 467899999975
No 36
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=92.69 E-value=0.17 Score=44.55 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=60.2
Q ss_pred EEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHH
Q 013271 118 VLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYA 197 (446)
Q Consensus 118 vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~i 197 (446)
+.||++....--+.++....|+.-|+++++ -+.. .+.+.+.+.+..+.+.+ + +||++.|+ ..-+.+.+
T Consensus 2 V~Iimgs~SD~~v~~~a~~~l~~~gi~~dv--~V~s---aHR~p~~~~~~~~~a~~---~---ViIa~AG~-aa~Lpgvv 69 (157)
T 2ywx_A 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEV--RVAS---AHRTPELVEEIVKNSKA---D---VFIAIAGL-AAHLPGVV 69 (157)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTTCCEEE--EECC---TTTCHHHHHHHHHHCCC---S---EEEEEEES-SCCHHHHH
T ss_pred EEEEEccHHHHHHHHHHHHHHHHcCCCeEE--EEEc---ccCCHHHHHHHHHhcCC---C---EEEEEcCc-hhhhHHHH
Confidence 678888765545899999999999975543 3433 47888888877764322 4 89988877 45678888
Q ss_pred HHhhcCCCeEEEEcC
Q 013271 198 AASYLRGVSFIQIPT 212 (446)
Q Consensus 198 Aa~~~~g~p~i~IPT 212 (446)
|+ ....|+|.|||
T Consensus 70 a~--~t~~PVIgVP~ 82 (157)
T 2ywx_A 70 AS--LTTKPVIAVPV 82 (157)
T ss_dssp HT--TCSSCEEEEEE
T ss_pred Hh--ccCCCEEEecC
Confidence 65 57899999999
No 37
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=91.79 E-value=0.74 Score=45.19 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=56.7
Q ss_pred CCEEEEEECCCchh----HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-cc
Q 013271 115 GKKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GV 189 (446)
Q Consensus 115 ~k~vliVtd~~v~~----~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gs 189 (446)
-+|++||.++.... ...+++.+.|++.| +++... .... + ....++.+.+...++| .||++|| |+
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g--~~~~~~--~t~~--~--~~a~~~~~~~~~~~~d---~vvv~GGDGT 92 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAG--YETSAY--ATEK--I--GDATLEAERAMHENYD---VLIAAGGDGT 92 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTT--EEEEEE--ECCS--T--THHHHHHHHHTTTTCS---EEEEEECHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcC--CeEEEE--EecC--c--chHHHHHHHHhhcCCC---EEEEEcCchH
Confidence 36789999976642 35688999999988 344322 2111 1 1233444444445666 9999988 88
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 190 IGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+..++..+.. ...++|+..||.-
T Consensus 93 v~~v~~~l~~-~~~~~pl~iIP~G 115 (337)
T 2qv7_A 93 LNEVVNGIAE-KPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHHTT-CSSCCEEEEEECS
T ss_pred HHHHHHHHHh-CCCCCcEEEecCC
Confidence 8888876521 3468999999965
No 38
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=90.79 E-value=0.63 Score=45.09 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=54.8
Q ss_pred CCEEEEEECCCchh----HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-cc
Q 013271 115 GKKVLVVTNNTVAP----LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GV 189 (446)
Q Consensus 115 ~k~vliVtd~~v~~----~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gs 189 (446)
.+|+++|.++.... ...+++...|.+.++ +++++. ...+ ....++.+.+. .++| .||++|| |+
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~--~~~~~~--t~~~----~~a~~~~~~~~-~~~d---~vv~~GGDGT 75 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFP--DLHILH--TKEQ----GDATKYCQEFA-SKVD---LIIVFGGDGT 75 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCS--EEEEEE--CCST----THHHHHHHHHT-TTCS---EEEEEECHHH
T ss_pred CCEEEEEECcccCCCchHHHHHHHHHHHHHcCC--eEEEEE--ccCc----chHHHHHHHhh-cCCC---EEEEEccchH
Confidence 57899999986432 356788899998884 443322 1111 23444454443 2566 8888888 77
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 190 IGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+..++-.++. ...++|+-.||.-
T Consensus 76 l~~v~~~l~~-~~~~~~l~iiP~G 98 (304)
T 3s40_A 76 VFECTNGLAP-LEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHHTT-CSSCCEEEEEECS
T ss_pred HHHHHHHHhh-CCCCCcEEEecCC
Confidence 7777765421 1267999999965
No 39
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=88.59 E-value=1 Score=43.05 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=46.4
Q ss_pred EEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHHHH
Q 013271 117 KVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMC 194 (446)
Q Consensus 117 ~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D~a 194 (446)
|+.+|.++.-... ..+++.+.|++.|+ ++ . ..++| +||++|| |++..++
T Consensus 2 ki~ii~n~~~~~~~~~~~l~~~l~~~g~--~v-----~-------------------~~~~D---~vv~lGGDGT~l~aa 52 (272)
T 2i2c_A 2 KYMITSKGDEKSDLLRLNMIAGFGEYDM--EY-----D-------------------DVEPE---IVISIGGDGTFLSAF 52 (272)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSSC--EE-----C-------------------SSSCS---EEEEEESHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCC--Ee-----C-------------------CCCCC---EEEEEcCcHHHHHHH
Confidence 5777777543222 67888888998883 32 1 24566 9999988 8888888
Q ss_pred HHHHHhhcCCCeEEEEcCC
Q 013271 195 GYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 195 K~iAa~~~~g~p~i~IPTT 213 (446)
+.++. ...++|++.||+.
T Consensus 53 ~~~~~-~~~~~PilGIn~G 70 (272)
T 2i2c_A 53 HQYEE-RLDEIAFIGIHTG 70 (272)
T ss_dssp HHTGG-GTTTCEEEEEESS
T ss_pred HHHhh-cCCCCCEEEEeCC
Confidence 76521 1138999999974
No 40
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=86.89 E-value=2.4 Score=41.13 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=49.2
Q ss_pred CCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCCC---cH-H--------HHHHHH-HHHHHcCCCCc
Q 013271 115 GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYK---NM-D--------TLMKVF-DKAIESRLDRR 179 (446)
Q Consensus 115 ~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~---t~-~--------~v~~~~-~~~~~~~~dr~ 179 (446)
.+|++||..+.-.+. ..+++.+.|.+.|+ ++. +.......- .. . .+.... +.....++|
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~--~v~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d-- 77 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGDNKI--ALR--VLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCE-- 77 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHTTTC--EEE--EEC-----------------------------------CC--
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCC--EEE--EecchhhhhhcccccccccccccccccccccccccccCCC--
Confidence 368999999866543 68899999999994 332 222111100 00 0 011111 111334566
Q ss_pred ceEEEEcC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 180 CTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 180 ~~IIAiGG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+||++|| |++.-++..++. .++|++.|++.
T Consensus 78 -~vi~~GGDGT~l~a~~~~~~---~~~pvlgi~~G 108 (307)
T 1u0t_A 78 -LVLVLGGDGTFLRAAELARN---ASIPVLGVNLG 108 (307)
T ss_dssp -CEEEEECHHHHHHHHHHHHH---HTCCEEEEECS
T ss_pred -EEEEEeCCHHHHHHHHHhcc---CCCCEEEEeCC
Confidence 9999988 778888877643 47899999853
No 41
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=86.63 E-value=2.4 Score=40.58 Aligned_cols=82 Identities=17% Similarity=0.087 Sum_probs=48.3
Q ss_pred CEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHH-----HHHHHHHHcCCCCcceEEEEcC-
Q 013271 116 KKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLM-----KVFDKAIESRLDRRCTFVALGG- 187 (446)
Q Consensus 116 k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~-----~~~~~~~~~~~dr~~~IIAiGG- 187 (446)
+|+++|+++.-.+. ..+++.+.|.+.|+ ++ .+.... .+.+. .........++| +||++||
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~--~v--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D---~vi~~GGD 73 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGY--EV--IVEQQI-----AHELQLKNVPTGTLAEIGQQAD---LAVVVGGD 73 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTC--EE--EEEHHH-----HHHTTCSSCCEECHHHHHHHCS---EEEECSCH
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCC--EE--EEecch-----hhhcccccccccchhhcccCCC---EEEEEcCc
Confidence 78999988753332 68889999999984 43 222110 00000 000111234677 9999988
Q ss_pred ccHHHHHHHHHHhhcCCCeEEEEcC
Q 013271 188 GVIGDMCGYAAASYLRGVSFIQIPT 212 (446)
Q Consensus 188 Gsv~D~aK~iAa~~~~g~p~i~IPT 212 (446)
|++.-++..++ ..++|++.||+
T Consensus 74 GT~l~a~~~~~---~~~~P~lGI~~ 95 (292)
T 2an1_A 74 GNMLGAARTLA---RYDINVIGINR 95 (292)
T ss_dssp HHHHHHHHHHT---TSSCEEEEBCS
T ss_pred HHHHHHHHHhh---cCCCCEEEEEC
Confidence 78888887653 34799999984
No 42
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=83.73 E-value=5.3 Score=37.10 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=52.7
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHH
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 193 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~ 193 (446)
.++|+-+|+-++.... .+.+.+.|.- ++..+.+. +.++++..++.+++.|++ +| ||||.++|+
T Consensus 105 ~~~kIavVg~~~~~~~-~~~i~~ll~~-----~i~~~~~~------~~ee~~~~i~~l~~~G~~---vV--VG~~~~~~~ 167 (225)
T 2pju_A 105 LTSSIGVVTYQETIPA-LVAFQKTFNL-----RLDQRSYI------TEEDARGQINELKANGTE---AV--VGAGLITDL 167 (225)
T ss_dssp TTSCEEEEEESSCCHH-HHHHHHHHTC-----CEEEEEES------SHHHHHHHHHHHHHTTCC---EE--EESHHHHHH
T ss_pred hCCcEEEEeCchhhhH-HHHHHHHhCC-----ceEEEEeC------CHHHHHHHHHHHHHCCCC---EE--ECCHHHHHH
Confidence 3567777766665432 3556665642 34445543 678999999999999999 54 569999999
Q ss_pred HHHHHHhhcCCCeEEEEc
Q 013271 194 CGYAAASYLRGVSFIQIP 211 (446)
Q Consensus 194 aK~iAa~~~~g~p~i~IP 211 (446)
|+- .|+|.+.|-
T Consensus 168 A~~------~Gl~~vlI~ 179 (225)
T 2pju_A 168 AEE------AGMTGIFIY 179 (225)
T ss_dssp HHH------TTSEEEESS
T ss_pred HHH------cCCcEEEEC
Confidence 974 488877764
No 43
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=83.62 E-value=4.5 Score=36.58 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=53.1
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHH
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 193 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~ 193 (446)
.++|+-+|+-++.... .+.+.+.|. +++..+.+. +.++++..++.+++.|++ +| |||+.++++
T Consensus 93 ~~~kIavvg~~~~~~~-~~~~~~ll~-----~~i~~~~~~------~~~e~~~~i~~l~~~G~~---vv--VG~~~~~~~ 155 (196)
T 2q5c_A 93 FGNELALIAYKHSIVD-KHEIEAMLG-----VKIKEFLFS------SEDEITTLISKVKTENIK---IV--VSGKTVTDE 155 (196)
T ss_dssp GCSEEEEEEESSCSSC-HHHHHHHHT-----CEEEEEEEC------SGGGHHHHHHHHHHTTCC---EE--EECHHHHHH
T ss_pred hCCcEEEEeCcchhhH-HHHHHHHhC-----CceEEEEeC------CHHHHHHHHHHHHHCCCe---EE--ECCHHHHHH
Confidence 3567777766655432 355565554 234445543 456788899999999999 55 569999999
Q ss_pred HHHHHHhhcCCCeEEEEcCC
Q 013271 194 CGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 194 aK~iAa~~~~g~p~i~IPTT 213 (446)
|+- .|+|.+.|-+.
T Consensus 156 A~~------~Gl~~vli~sg 169 (196)
T 2q5c_A 156 AIK------QGLYGETINSG 169 (196)
T ss_dssp HHH------TTCEEEECCCC
T ss_pred HHH------cCCcEEEEecC
Confidence 974 58998888653
No 44
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=82.22 E-value=2.8 Score=41.11 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
++.+..+++++.++++++| .+|.|||--.++.|..++ ..++|+|.||-|.
T Consensus 78 ~~~~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~---~~~i~vvgiPkTI 127 (320)
T 1pfk_A 78 RDENIRAVAIENLKKRGID---ALVVIGGDGSYMGAMRLT---EMGFPCIGLPGTI 127 (320)
T ss_dssp GSHHHHHHHHHHHHHTTCC---EEEEEECHHHHHHHHHHH---HTTCCEEEEEBCT
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEECCCchHHHHHHHH---hhCCCEEEEeccc
Confidence 3667899999999999999 999999999999998775 3589999999995
No 45
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=80.38 E-value=2.4 Score=43.17 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh-c--CCCeEEEEcCCc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-L--RGVSFIQIPTTV 214 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~-~--~g~p~i~IPTTl 214 (446)
++.+..+++++.++++++| .+|.|||--.++.|..++-.. . .++|+|.||-|.
T Consensus 88 ~~~~~~~~~~~~l~~~~Id---~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTI 143 (419)
T 3hno_A 88 QNRREYERLIEVFKAHDIG---YFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTV 143 (419)
T ss_dssp -CHHHHHHHHHHHHHTTEE---EEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCT
T ss_pred cCHHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccc
Confidence 3668999999999999999 999999988888887775322 2 359999999996
No 46
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=79.76 E-value=10 Score=30.46 Aligned_cols=76 Identities=9% Similarity=0.038 Sum_probs=49.7
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHH
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 193 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~ 193 (446)
...+++||.|... ..+.+...|...| +.+ ..+. + ..++++.+.+..+| +|| +.+..-.++
T Consensus 17 ~~~~ilivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~al~~l~~~~~d---lvi-~~~~~g~~~ 76 (137)
T 2pln_A 17 GSMRVLLIEKNSV---LGGEIEKGLNVKG--FMA--DVTE------S---LEDGEYLMDIRNYD---LVM-VSDKNALSF 76 (137)
T ss_dssp TCSEEEEECSCHH---HHHHHHHHHHHTT--CEE--EEES------C---HHHHHHHHHHSCCS---EEE-ECSTTHHHH
T ss_pred CCCeEEEEeCCHH---HHHHHHHHHHHcC--cEE--EEeC------C---HHHHHHHHHcCCCC---EEE-EcCccHHHH
Confidence 3568888877643 3455666677777 443 2332 2 23444555666777 999 998888999
Q ss_pred HHHHHHhhcC-CCeEEEEc
Q 013271 194 CGYAAASYLR-GVSFIQIP 211 (446)
Q Consensus 194 aK~iAa~~~~-g~p~i~IP 211 (446)
++.+... . .+|+|.+-
T Consensus 77 ~~~l~~~--~~~~~ii~ls 93 (137)
T 2pln_A 77 VSRIKEK--HSSIVVLVSS 93 (137)
T ss_dssp HHHHHHH--STTSEEEEEE
T ss_pred HHHHHhc--CCCccEEEEe
Confidence 9888654 5 78888773
No 47
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=77.25 E-value=3.5 Score=40.41 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
++.+..+++++.++++++| .+|.|||--.++.|..++- .++|+|.||-|.
T Consensus 77 ~~~~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~---~~i~vvgiPkTI 126 (319)
T 1zxx_A 77 AEEEGQLAGIEQLKKHGID---AVVVIGGDGSYHGALQLTR---HGFNSIGLPGTI 126 (319)
T ss_dssp TSHHHHHHHHHHHHHTTCC---EEEEEECHHHHHHHHHHHH---TTCCEEEEEEET
T ss_pred CCHHHHHHHHHHHHHhCCC---EEEEECCchHHHHHHHHHH---hCCCEEEEeecc
Confidence 3678899999999999999 9999999999999987753 489999999995
No 48
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=74.98 E-value=3.9 Score=40.06 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
++.+..+++++.++++++| .++.|||--.++.|..++ ..++|+|.||=|.
T Consensus 77 ~~~e~~~~~~~~l~~~~Id---~L~~IGGdgS~~~a~~l~---~~~i~vigiPkTI 126 (319)
T 4a3s_A 77 KTVEGREKGIANLKKLGIE---GLVVIGGDGSYMGAKKLT---EHGFPCVGVPGTI 126 (319)
T ss_dssp HSHHHHHHHHHHHHHHTCC---EEEEEECTTHHHHHHHHH---HTTCCEEEEEEET
T ss_pred ccHHHHHHHHHHHHHcCCC---EEEEeCCcHHHHHHHHHh---ccCCcEEEeeccc
Confidence 4567889999999999999 999999999999997764 3589999999994
No 49
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=72.51 E-value=5.6 Score=41.95 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh---hcCCCeEEEEcCCc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---YLRGVSFIQIPTTV 214 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~---~~~g~p~i~IPTTl 214 (446)
++.+..+++++.++++++| .+|.|||--.++.|..++-. +..++|+|.||-|.
T Consensus 150 ~~~e~~~~~~~~l~~~~Id---~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTI 205 (555)
T 2f48_A 150 ETEEHYNKALFVAKENNLN---AIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTI 205 (555)
T ss_dssp CSHHHHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEecccc
Confidence 4678899999999999999 99999999999988877543 23479999999886
No 50
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=69.46 E-value=7.6 Score=37.27 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=45.5
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcC-ccHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG-GVIGDMCG 195 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGG-Gsv~D~aK 195 (446)
|+.||+...-. .+++.+.|++.|+ ++ .+.+.... .+ .++| +||++|| |+++.+++
T Consensus 31 ki~iv~~~~~~---~~~l~~~L~~~g~--~v--~~~~~~~~-----~~---------~~~D---lvIvlGGDGT~L~aa~ 86 (278)
T 1z0s_A 31 RAAVVYKTDGH---VKRIEEALKRLEV--EV--ELFNQPSE-----EL---------ENFD---FIVSVGGDGTILRILQ 86 (278)
T ss_dssp EEEEEESSSTT---HHHHHHHHHHTTC--EE--EEESSCCG-----GG---------GGSS---EEEEEECHHHHHHHHT
T ss_pred EEEEEeCCcHH---HHHHHHHHHHCCC--EE--EEcccccc-----cc---------CCCC---EEEEECCCHHHHHHHH
Confidence 57888876543 7888889999984 33 22221111 00 2566 9999988 78888886
Q ss_pred HHHHhhcCCCeEEEEcCC
Q 013271 196 YAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTT 213 (446)
.++ .. +|++.|.|.
T Consensus 87 ~~~---~~-~PilGIN~G 100 (278)
T 1z0s_A 87 KLK---RC-PPIFGINTG 100 (278)
T ss_dssp TCS---SC-CCEEEEECS
T ss_pred HhC---CC-CcEEEECCC
Confidence 542 23 999999863
No 51
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=63.99 E-value=19 Score=36.06 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=49.5
Q ss_pred CCEEEEEECCCchhH--HHHHHHHHHhcC--CCCeeEEEEEeCCCCCCCcHHHHH-HH-----------------HHHHH
Q 013271 115 GKKVLVVTNNTVAPL--YLDKVTDALTRG--NPNVSVENVILPDGENYKNMDTLM-KV-----------------FDKAI 172 (446)
Q Consensus 115 ~k~vliVtd~~v~~~--~~~~v~~~L~~~--gi~~~v~~~i~~~ge~~~t~~~v~-~~-----------------~~~~~ 172 (446)
.++++||+.+.-.+. ..+++.+.|.+. | ++| + +... ..+.+. +. .....
T Consensus 41 ~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~g--i~V--~-ve~~----~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T 3afo_A 41 LQNVYITKKPWTPSTREAMVEFITHLHESYPE--VNV--I-VQPD----VAEEISQDFKSPLENDPNRPHILYTGPEQDI 111 (388)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHHHCTT--CEE--E-CCHH----HHHHHHTTCCSCGGGCTTSCEEEEECCHHHH
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--eEE--E-EeCc----hhhhhhhhccccccccccccccccccchhhc
Confidence 578999999775443 678888888877 5 332 2 2110 000100 00 00011
Q ss_pred HcCCCCcceEEEEcC-ccHHHHHHHHHHhhcCCC-eEEEEcCC
Q 013271 173 ESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGV-SFIQIPTT 213 (446)
Q Consensus 173 ~~~~dr~~~IIAiGG-Gsv~D~aK~iAa~~~~g~-p~i~IPTT 213 (446)
..++| +||++|| |+++-+++.++ ..++ |++.|++.
T Consensus 112 ~~~~D---lVIvlGGDGTlL~aa~~~~---~~~vpPiLGIN~G 148 (388)
T 3afo_A 112 VNRTD---LLVTLGGDGTILHGVSMFG---NTQVPPVLAFALG 148 (388)
T ss_dssp HHHCS---EEEEEESHHHHHHHHHTTT---TSCCCCEEEEECS
T ss_pred ccCCC---EEEEEeCcHHHHHHHHHhc---ccCCCeEEEEECC
Confidence 23567 9999988 78877776542 3466 89999864
No 52
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=62.88 E-value=11 Score=42.37 Aligned_cols=51 Identities=18% Similarity=0.105 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhc----CCCeEEEEcCCc
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----RGVSFIQIPTTV 214 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~----~g~p~i~IPTTl 214 (446)
.+..+++++.++++++| .+|.|||--.++.|..++.... .++|+|.||-|.
T Consensus 674 ~~~~~~i~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTI 728 (989)
T 3opy_A 674 SDDMGTVAYYFQQYKFD---GLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATV 728 (989)
T ss_dssp GGGHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCS
T ss_pred hhhHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccc
Confidence 45788889999999999 9999999888888877754321 389999999996
No 53
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=60.12 E-value=9.9 Score=41.60 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh---hc-CCCeEEEEcCCcC---cccccccc
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---YL-RGVSFIQIPTTVM---AQVDSSVG 223 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~---~~-~g~p~i~IPTTl~---A~tds~v~ 223 (446)
.+..+++++.++++++| .+|.|||--.++.|..++.. |. .++|+|.||-|.- .+||-++|
T Consensus 475 ~~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiG 541 (762)
T 3o8l_A 475 KKSFEQISANITKFNIQ---GLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVG 541 (762)
T ss_dssp GGGHHHHHHHHHHTTCC---CEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBT
T ss_pred HHHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCC
Confidence 46789999999999999 99999998888888766432 22 4899999999963 34554444
No 54
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=58.49 E-value=36 Score=32.28 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=55.4
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
+++.+. +.+|+.+|++...+.. ..+.+.+.+++.|+.+ +....++.+.. + ....++.+++.++| +|+..
T Consensus 132 ~~l~~~-g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v-~~~~~~~~~~~--d---~~~~~~~l~~~~~d---~v~~~ 201 (368)
T 4eyg_A 132 DWAAKN-GIKKVATLTSDYAPGNDALAFFKERFTAGGGEI-VEEIKVPLANP--D---FAPFLQRMKDAKPD---AMFVF 201 (368)
T ss_dssp HHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEE-EEEEEECSSSC--C---CHHHHHHHHHHCCS---EEEEE
T ss_pred HHHHHc-CCCEEEEEecCchHhHHHHHHHHHHHHHcCCEE-EEEEeCCCCCC--c---HHHHHHHHHhcCCC---EEEEe
Confidence 445544 5789988886654443 5778888999988532 12233443332 2 33455666777888 88886
Q ss_pred cCccHHHHHHHHHHhhcCC-----CeEEEEc
Q 013271 186 GGGVIGDMCGYAAASYLRG-----VSFIQIP 211 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g-----~p~i~IP 211 (446)
+.+. +...++......| +|++...
T Consensus 202 ~~~~--~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 202 VPAG--QGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp CCTT--CHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred ccch--HHHHHHHHHHHcCCCcCCceEEecC
Confidence 6555 6666655443333 5666543
No 55
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=57.62 E-value=49 Score=32.87 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=51.0
Q ss_pred CCCEEEEEECCCchhH--HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHH---------HHHH------HcCC
Q 013271 114 QGKKVLVVTNNTVAPL--YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVF---------DKAI------ESRL 176 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~---------~~~~------~~~~ 176 (446)
..++++||+=..-.+. ...++.+.|.+.|+ +| ++ +. ...+.. .+. .... +.-.
T Consensus 37 ~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~--~V--~v-e~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (365)
T 3pfn_A 37 SPKSVLVIKKMRDASLLQPFKELCTHLMEENM--IV--YV-EK----KVLEDP-AIASDESFGAVKKKFCTFREDYDDIS 106 (365)
T ss_dssp CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSC--EE--EE-EH----HHHHSH-HHHHCSTTHHHHHHCEEECTTTCCCT
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCC--EE--EE-eh----HHhhhh-ccccccccccccccccccccChhhcc
Confidence 4688999987654443 67888899998884 43 22 10 011110 000 0000 0001
Q ss_pred CCcceEEEEcC-ccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 177 DRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 177 dr~~~IIAiGG-Gsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+..|+||.+|| |+++-+++.+ ....+|++.|-+.
T Consensus 107 ~~~DlvI~lGGDGT~L~aa~~~---~~~~~PvlGiN~G 141 (365)
T 3pfn_A 107 NQIDFIICLGGDGTLLYASSLF---QGSVPPVMAFHLG 141 (365)
T ss_dssp TTCSEEEEESSTTHHHHHHHHC---SSSCCCEEEEESS
T ss_pred cCCCEEEEEcChHHHHHHHHHh---ccCCCCEEEEcCC
Confidence 22359999998 8888888764 2467899999764
No 56
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=56.92 E-value=21 Score=36.96 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh---hcCCCeEEEEcCCcC---cccccccc
Q 013271 164 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---YLRGVSFIQIPTTVM---AQVDSSVG 223 (446)
Q Consensus 164 v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~---~~~g~p~i~IPTTl~---A~tds~v~ 223 (446)
.+++++.++++++| .+|.|||--.++.|..++-. +..++|+|.||-|.- .+||-++|
T Consensus 178 ~~~i~~~l~~~~Id---~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~G 240 (487)
T 2hig_A 178 PKEMVDTLERLGVN---ILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFG 240 (487)
T ss_dssp HHHHHHHHHHHTCS---EEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTT
T ss_pred HHHHHHHHHHcCCC---EEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCC
Confidence 35889999999999 99999999999988777532 224699999999963 34444444
No 57
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=56.04 E-value=13 Score=29.45 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh--h--cCCCeEEEEcCC
Q 013271 162 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS--Y--LRGVSFIQIPTT 213 (446)
Q Consensus 162 ~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~--~--~~g~p~i~IPTT 213 (446)
.....+...+++.+.- -|-|||.|.+....|.+|.. | ..|+.++++|.=
T Consensus 14 ~VAGAIA~~lRe~~~v---eiqAIGa~AvNqAVKAIAIARg~l~~~g~Dl~~~PaF 66 (90)
T 2ek0_A 14 SVAGAIAAMLRTKGEV---EVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAF 66 (90)
T ss_dssp HHHHHHHHHHHHHSEE---EEEECSHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCce---EEEEECHHHHHHHHHHHHHHHHhhcccCceEEEeeee
Confidence 5667777788888876 89999999999999999864 2 478999999954
No 58
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=55.93 E-value=37 Score=32.30 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=54.7
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
+++.+. +.+|+.+|++...+.. ..+.+++.|++.|+++ +....++.+.. ++ ...++.+++.++| +|+..
T Consensus 144 ~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v-~~~~~~~~~~~--d~---~~~~~~l~~~~~d---ai~~~ 213 (375)
T 4evq_A 144 DAMIKA-GLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEV-VKDITIAFPDV--EF---QSALAEIASLKPD---CVYAF 213 (375)
T ss_dssp HHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEE-EEEEEECTTCC--CC---HHHHHHHHHHCCS---EEEEE
T ss_pred HHHHHc-CCcEEEEEecCchHHHHHHHHHHHHHHHcCCeE-EEEEecCCCCc--cH---HHHHHHHHhcCCC---EEEEe
Confidence 445544 5789999887654443 6788888999999532 12233443332 32 3445556667787 88887
Q ss_pred cCccHHHHHHHHHHhhcCC--CeEEE
Q 013271 186 GGGVIGDMCGYAAASYLRG--VSFIQ 209 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g--~p~i~ 209 (446)
+.+ .+..+++......| +|++.
T Consensus 214 ~~~--~~a~~~~~~~~~~g~~vp~~~ 237 (375)
T 4evq_A 214 FSG--GGALKFIKDYAAANLGIPLWG 237 (375)
T ss_dssp CCT--HHHHHHHHHHHHTTCCCCEEE
T ss_pred cCc--chHHHHHHHHHHcCCCceEEe
Confidence 665 35566665554455 45544
No 59
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=55.79 E-value=23 Score=39.64 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh--------------------cCCCeEEEEcCCcC---c
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVM---A 216 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~--------------------~~g~p~i~IPTTl~---A 216 (446)
+.+...++++.++++++| .+|.|||--.++.|..++..| ..++|+|.||-|.- .
T Consensus 289 ~~e~~~~~~~~L~~~gId---~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~ 365 (989)
T 3opy_A 289 ERWGRLQACYNMVSNGID---ALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMC 365 (989)
T ss_dssp SHHHHHHHHHHHHHTTCC---EEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCT
T ss_pred chhHHHHHHHHHHHcCCC---EEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCC
Confidence 456778899999999999 999999988888887654211 14799999999963 3
Q ss_pred ccccccc
Q 013271 217 QVDSSVG 223 (446)
Q Consensus 217 ~tds~v~ 223 (446)
+||-++|
T Consensus 366 gTD~TiG 372 (989)
T 3opy_A 366 GTDSTIG 372 (989)
T ss_dssp TCSCCEE
T ss_pred CCCCCCC
Confidence 4554444
No 60
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=55.16 E-value=69 Score=28.35 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=49.4
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCC-------------CCCcHHHHHHHHHHHHHcCCCCcceE
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGE-------------NYKNMDTLMKVFDKAIESRLDRRCTF 182 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge-------------~~~t~~~v~~~~~~~~~~~~dr~~~I 182 (446)
+|++|+.-++....=.-...+.|...| +++.++-..++. ++.+++.+ ....+| .|
T Consensus 3 ~kV~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~-------~~~~~D---~l 70 (205)
T 2ab0_A 3 ASALVCLAPGSEETEAVTTIDLLVRGG--IKVTTASVASDGNLAITCSRGVKLLADAPLVEV-------ADGEYD---VI 70 (205)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTT--CEEEEEECSSTTCCEEECTTSCEEECSEEHHHH-------TTSCCS---EE
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHHHCC--CEEEEEeCCCCCCceeecCCCeEEecCCCHHHC-------CcccCC---EE
Confidence 466666666665553333456677788 566544433321 11222221 123455 88
Q ss_pred EEEcCc-cHHH------HHHHHHHhhcCCCeEEEEcCCc
Q 013271 183 VALGGG-VIGD------MCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 183 IAiGGG-sv~D------~aK~iAa~~~~g~p~i~IPTTl 214 (446)
|-.||. ..-| +..++...+.++.++.+|+|..
T Consensus 71 ivpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~ 109 (205)
T 2ab0_A 71 VLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAP 109 (205)
T ss_dssp EECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHH
T ss_pred EECCCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhH
Confidence 888883 3443 3345555678999999999874
No 61
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=54.03 E-value=19 Score=39.50 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh----cCCCeEEEEcCCc
Q 013271 162 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----LRGVSFIQIPTTV 214 (446)
Q Consensus 162 ~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~----~~g~p~i~IPTTl 214 (446)
+...++++.++++++| .+|.|||--.++.|..++-.. ..++|+|.||-|.
T Consensus 470 ~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTI 523 (787)
T 3o8o_A 470 EDLGTIAYYFQKNKLD---GLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATV 523 (787)
T ss_dssp GCHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCT
T ss_pred hhHHHHHHHHHHhCCC---EEEEeCCchHHHHHHHHHHHHHhcCccCCceeeccccc
Confidence 4677888999999999 999999988888887765321 1379999999995
No 62
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=53.48 E-value=72 Score=24.71 Aligned_cols=78 Identities=9% Similarity=0.028 Sum_probs=48.3
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 192 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~D 192 (446)
.+++||.|... ..+.+.+.|.+.| +.+ ..+. + ..++++.+.+..+| +||. +.+..-.+
T Consensus 4 ~~ilivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~a~~~l~~~~~d---lii~D~~l~~~~g~~ 64 (127)
T 3i42_A 4 QQALIVEDYQA---AAETFKELLEMLG--FQA--DYVM------S---GTDALHAMSTRGYD---AVFIDLNLPDTSGLA 64 (127)
T ss_dssp EEEEEECSCHH---HHHHHHHHHHHTT--EEE--EEES------S---HHHHHHHHHHSCCS---EEEEESBCSSSBHHH
T ss_pred ceEEEEcCCHH---HHHHHHHHHHHcC--CCE--EEEC------C---HHHHHHHHHhcCCC---EEEEeCCCCCCCHHH
Confidence 46777766543 4566666777777 443 2332 2 33455555667777 6654 46788889
Q ss_pred HHHHHHHhh-cCCCeEEEEcC
Q 013271 193 MCGYAAASY-LRGVSFIQIPT 212 (446)
Q Consensus 193 ~aK~iAa~~-~~g~p~i~IPT 212 (446)
+++.+.... ...+|+|.+-.
T Consensus 65 ~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 65 LVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HHHHHHHSCCSSCCEEEEEEC
T ss_pred HHHHHHhhhccCCCCEEEEEC
Confidence 988875432 45688877743
No 63
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=53.30 E-value=34 Score=32.50 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=21.9
Q ss_pred ceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 180 CTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 180 ~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
|++|+=||+++..++ ..|+|.|.||+.
T Consensus 227 DlvI~~gG~T~~E~~-------~~g~P~i~ip~~ 253 (282)
T 3hbm_A 227 NKLIISASSLVNEAL-------LLKANFKAICYV 253 (282)
T ss_dssp EEEEEESSHHHHHHH-------HTTCCEEEECCS
T ss_pred CEEEECCcHHHHHHH-------HcCCCEEEEeCC
Confidence 499998888777776 259999999974
No 64
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=53.27 E-value=37 Score=29.83 Aligned_cols=74 Identities=9% Similarity=0.061 Sum_probs=47.7
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
+++||.|... ..+.+...|...| +.+. .+. + ..++++.+.+..+| +|| +.+..-.|+++.
T Consensus 2 ~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~al~~l~~~~~d---lvi-lp~~~g~~~~~~ 61 (223)
T 2hqr_A 2 RVLLIEKNSV---LGGEIEKGLNVKG--FMAD--VTE------S---LEDGEYLMDIRNYD---LVM-VSDKNALSFVSR 61 (223)
T ss_dssp CEEEECSCHH---HHHHHHHHHGGGT--CCEE--EES------S---HHHHHHHHTTSCCS---EEE-ECCTTHHHHHHH
T ss_pred EEEEEcCCHH---HHHHHHHHHHHCC--cEEE--EEC------C---HHHHHHHHhcCCCC---EEE-eCCCCHHHHHHH
Confidence 4677766543 4556666777767 4442 232 2 33444555566677 999 999899999988
Q ss_pred HHHhhcCCCeEEEEc
Q 013271 197 AAASYLRGVSFIQIP 211 (446)
Q Consensus 197 iAa~~~~g~p~i~IP 211 (446)
+... ...+|+|.+-
T Consensus 62 lr~~-~~~~~ii~lt 75 (223)
T 2hqr_A 62 IKEK-HSSIVVLVSS 75 (223)
T ss_dssp HHHH-CTTSEEEEEE
T ss_pred HHhC-CCCCcEEEEE
Confidence 8654 3378888773
No 65
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=53.22 E-value=94 Score=29.38 Aligned_cols=84 Identities=8% Similarity=-0.002 Sum_probs=56.0
Q ss_pred hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 106 PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 106 ~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
.++++.+ +.+++.+|+|..-+....+.+.+.+.+.|+ .+...... ..........+..++..+.+ +||..
T Consensus 122 ~~l~~~~-~w~~vaii~~~d~~~~~~~~~~~~~~~~g~--~v~~~~~~----~~~~~d~~~~l~~i~~~~~~---vIv~~ 191 (389)
T 4gpa_A 122 LSLLDHY-EWNCFVFLYDTDRGYSILQAIMEKAGQNGW--HVSAICVE----NFNDVSYRQLLEELDRRQEK---KFVID 191 (389)
T ss_dssp HHHHHHT-TCCEEEEEECSTTCSHHHHHHHHHHHTTTC--EEEEEECT----TCCHHHHHHHHHHHHHHTCC---EEEEE
T ss_pred HHHHHHc-CCcEEEEEEecchhhHHHHHHHHHHHhcCc--eEEEEeec----CCcchhHHHHHHHhhccCCc---EEEEE
Confidence 4566665 579999999876655556677788888884 44333322 34567788888888988888 77776
Q ss_pred cCccHHHHHHHHHHhh
Q 013271 186 GGGVIGDMCGYAAASY 201 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~ 201 (446)
+.. -+...++..+.
T Consensus 192 ~~~--~~~~~il~~a~ 205 (389)
T 4gpa_A 192 CEI--ERLQNILEQIV 205 (389)
T ss_dssp CCH--HHHHHHHHHHH
T ss_pred ech--hHHHHHHHHHH
Confidence 654 35555554443
No 66
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=53.00 E-value=1.1e+02 Score=31.24 Aligned_cols=96 Identities=11% Similarity=0.020 Sum_probs=56.3
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHH-cCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~-~~~dr~~~IIA 184 (446)
++++.+ +.+++.+|++...+.. ..+.+++.+++.|+.+. ....++. +.+.......+..+++ .+++ +||.
T Consensus 179 ~ll~~f-gw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~-~~~~~~~---~~~~~~~~~~l~~i~~~s~a~---vIi~ 250 (555)
T 2e4u_A 179 EILRFF-NWTYVSTVASEGDYGETGIEAFEQEARLRNICIA-TAEKVGR---SNIRKSYDSVIRELLQKPNAR---VVVL 250 (555)
T ss_dssp HHHHHT-TCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEE-EEEEECT---TCCHHHHHHHHHHHHTCTTCC---EEEE
T ss_pred HHHHHc-CCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEE-EEEEeCC---CCChHHHHHHHHHHhccCCCC---EEEE
Confidence 455543 4678777766554443 77888999999995321 1233432 1244567777777754 5777 8888
Q ss_pred EcCccHHHHHHHHHHhhcCCCeEEEEcC
Q 013271 185 LGGGVIGDMCGYAAASYLRGVSFIQIPT 212 (446)
Q Consensus 185 iGGGsv~D~aK~iAa~~~~g~p~i~IPT 212 (446)
.|.+. |+..++..+...++..+-|-|
T Consensus 251 ~~~~~--~~~~~~~~~~~~g~~~~~i~s 276 (555)
T 2e4u_A 251 FMRSD--DSRELIAAANRVNASFTWVAS 276 (555)
T ss_dssp ECCHH--HHHHHHHHHHHTTCCCEEEEC
T ss_pred EcCHH--HHHHHHHHHHHhcCCeEEEEe
Confidence 77553 555555444444444444433
No 67
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=52.99 E-value=71 Score=29.28 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=53.3
Q ss_pred CCEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccH-
Q 013271 115 GKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI- 190 (446)
Q Consensus 115 ~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv- 190 (446)
.+++.+|..... +..+.+-+.+.+++.| +.+.++ .. . +.+.+.-.+.++.+...++| .||-.+....
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~~-~~-~--~~~~~~~~~~i~~l~~~~vd---giIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALN--VTVEYR-GA-A--QYDIQEQITVLEQAIAKNPA---GIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHT--CEEEEE-EC-S--SSCHHHHHHHHHHHHHHCCS---EEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcC--CEEEEe-CC-C--cCCHHHHHHHHHHHHHhCCC---EEEEcCCCHHH
Confidence 466666665432 2235677778888888 444321 22 2 23556667777888888999 8887765432
Q ss_pred -HHHHHHHHHhhcCCCeEEEEcCC
Q 013271 191 -GDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 191 -~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
-+..+. ....++|+|.+-..
T Consensus 75 ~~~~~~~---~~~~~iPvV~~~~~ 95 (305)
T 3g1w_A 75 LTDTINK---AVDAGIPIVLFDSG 95 (305)
T ss_dssp THHHHHH---HHHTTCCEEEESSC
T ss_pred HHHHHHH---HHHCCCcEEEECCC
Confidence 223322 33579999999766
No 68
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=52.65 E-value=28 Score=38.01 Aligned_cols=62 Identities=6% Similarity=0.176 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh--------------------cCCCeEEEEcCCcC---
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVM--- 215 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~--------------------~~g~p~i~IPTTl~--- 215 (446)
++.+...++++.++++++| .+|.|||--.++.|..++..| ..++|+|.||-|.-
T Consensus 93 ~~~~~~~~~~~~l~~~~Id---~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl 169 (762)
T 3o8l_A 93 REREGRLRAAHNLVKRGIT---NLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDF 169 (762)
T ss_dssp GSHHHHHHHHHHHHHHCCC---EEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCC
T ss_pred cCHHHHHHHHHHHHHcCCC---EEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCC
Confidence 4567888999999999999 999999988888887553211 13799999999973
Q ss_pred cccccccc
Q 013271 216 AQVDSSVG 223 (446)
Q Consensus 216 A~tds~v~ 223 (446)
.+||-++|
T Consensus 170 ~gTD~TiG 177 (762)
T 3o8l_A 170 CGTDMTIG 177 (762)
T ss_dssp SSCSCCBT
T ss_pred CCCcCCcC
Confidence 35554444
No 69
>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural G PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} SCOP: c.52.1.26
Probab=51.83 E-value=70 Score=31.75 Aligned_cols=94 Identities=9% Similarity=0.121 Sum_probs=59.9
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCC-CCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGE-NYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge-~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
..+++++|+.+... ...+++.+.|.+.|+ +++.+.+++.. ...-.+.+.++++.+...+.+ +++=+=||+-.-
T Consensus 27 kp~~vv~I~s~~~~-~~~~~l~~~l~~~~i--~~~~~~i~~~~d~~~i~~~~~~l~~~~~~~~~~---v~~N~TGGTK~M 100 (385)
T 1xmx_A 27 VSRHIIFIGDHTQT-VIYQRLSDVLNKRNI--STDFFEIPAGSNTSAIKSAIRELAETLKARGEE---VKFNASCGLRHR 100 (385)
T ss_dssp CCCEEEEEECGGGH-HHHHHHHHHHHHTTC--EEEEEECCSSSCHHHHHHHHHHHHHHHHHHTCE---EEEECSSSCHHH
T ss_pred CCCEEEEEECCcHH-HHHHHHHHHHHHcCC--CceEEecCCccCHHHHHHHHHHHHHHhhccCCc---EEEEeCCChHHH
Confidence 46788888876643 467888999998885 56666664332 112234456666666555544 888888887666
Q ss_pred HHHHHHHhhcCCCeEEEEcCC
Q 013271 193 MCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 193 ~aK~iAa~~~~g~p~i~IPTT 213 (446)
...+..+.-..+.|++.+.+.
T Consensus 101 slaay~~~~~~~~~i~Yvd~~ 121 (385)
T 1xmx_A 101 LLSAYEVFRSYHWPIFVVEPN 121 (385)
T ss_dssp HHHHHHHHHHTTCCEEEECTT
T ss_pred HHHHHHHHHhcCCcEEEEeCC
Confidence 544433333467888888664
No 70
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=51.54 E-value=25 Score=39.30 Aligned_cols=49 Identities=12% Similarity=0.033 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh----cCCCeEEEEcCCc
Q 013271 163 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----LRGVSFIQIPTTV 214 (446)
Q Consensus 163 ~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~----~~g~p~i~IPTTl 214 (446)
...++++.++++++| .+|.|||--.++.|..++-.. ..++|+|.||-|.
T Consensus 650 ~~~~i~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTI 702 (941)
T 3opy_B 650 DIGMIAYFFEKYGFD---GLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATI 702 (941)
T ss_dssp CHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCS
T ss_pred hHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccc
Confidence 466888899999999 999999988888887775321 1389999999995
No 71
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=51.23 E-value=1e+02 Score=31.10 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=56.8
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHH-HHHHHcCCCCcceEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVF-DKAIESRLDRRCTFV 183 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~-~~~~~~~~dr~~~II 183 (446)
++++.+ +.+++.+|++..-+.. ..+.+++.+++.|+ .+.. ..++. +.+.......+ +.+++.+++ +||
T Consensus 178 ~ll~~f-gw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi--~v~~~~~i~~---~~~~~d~~~~l~~~i~~s~a~---vIi 248 (479)
T 3sm9_A 178 EILRFF-NWTYVSTVASEGDYGETGIEAFEQEARLRNI--SIATAEKVGR---SNIRKSYDSVIRELLQKPNAR---VVV 248 (479)
T ss_dssp HHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHTTTC--EEEEEEEECC-----CHHHHHHHHHHHHTCTTCC---EEE
T ss_pred HHHHHC-CCeEEEEEEecchhhHHHHHHHHHHHHHCCc--eEEEEEEcCC---CCChHHHHHHHHHHHhcCCCe---EEE
Confidence 344443 4688888876555544 78889999999995 3322 23332 22344555556 556667777 888
Q ss_pred EEcCccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 184 ALGGGVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 184 AiGGGsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
..|.+ -|+..++-.....++..+-|-|.
T Consensus 249 ~~~~~--~~~~~l~~~~~~~g~~~~wI~s~ 276 (479)
T 3sm9_A 249 LFMRS--DDSRELIAAASRANASFTWVASD 276 (479)
T ss_dssp EECCH--HHHHHHHHHHHHTTCCCEEEECT
T ss_pred EEcCh--HHHHHHHHHHHHhCCEEEEEEec
Confidence 88765 45555554444455544444443
No 72
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=51.14 E-value=1.7e+02 Score=27.85 Aligned_cols=82 Identities=16% Similarity=0.275 Sum_probs=48.8
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
+++.+. +.+|+.+|++...+.. ..+.+++.+++.|+ ++.. ..++. .+........++.+++.++| +|+.
T Consensus 133 ~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~~~~---~~~~~d~~~~~~~l~~~~pd---aI~~ 203 (385)
T 1pea_A 133 AYLIRH-YGERVVFIGSDYIYPRESNHVMRHLYRQHGG--TVLEEIYIPL---YPSDDDLQRAVERIYQARAD---VVFS 203 (385)
T ss_dssp HHHHTT-TCSEEEEEEESSHHHHHHHHHHHHHHHHTTC--EEEEEEEECS---SCCHHHHHHHHHHHHHHTCS---EEEE
T ss_pred HHHHHc-cCcEEEEEeCCChHHHHHHHHHHHHHHHcCC--EEEEEEeecC---CCCcchHHHHHHHHHHCCCC---EEEE
Confidence 344444 4689999987644333 56777888888885 3322 12221 12345566777777777787 8888
Q ss_pred EcCc-cHHHHHHHH
Q 013271 185 LGGG-VIGDMCGYA 197 (446)
Q Consensus 185 iGGG-sv~D~aK~i 197 (446)
.+.+ ...-+.+.+
T Consensus 204 ~~~~~~a~~~~~~~ 217 (385)
T 1pea_A 204 TVVGTGTAELYRAI 217 (385)
T ss_dssp ECCTHHHHHHHHHH
T ss_pred ecccccHHHHHHHH
Confidence 7643 344444433
No 73
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=50.98 E-value=45 Score=32.19 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=54.2
Q ss_pred hHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG 186 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG 186 (446)
++++.+ +.+++.+|+|........+.+.+.+++.|+ ++....++.+ ..+....+..+++.++| +||..+
T Consensus 131 ~~~~~~-g~~~v~ii~d~~~g~~~~~~~~~~~~~~g~--~v~~~~~~~~-----~~d~~~~l~~i~~~~~~---vi~~~~ 199 (395)
T 3h6g_A 131 DLVQFF-KWKTVTVVYDDSTGLIRLQELIKAPSRYNL--RLKIRQLPAD-----TKDAKPLLKEMKRGKEF---HVIFDC 199 (395)
T ss_dssp HHHHHT-TCSEEEEEESSTHHHHHTHHHHTGGGTSSC--EEEEEECCSS-----GGGGHHHHHHHHHTTCC---EEEEES
T ss_pred HHHHHC-CCeEEEEEEEChhHHHHHHHHHHhhhcCCc--eEEEEEeCCC-----chhHHHHHHHHhhcCCe---EEEEEC
Confidence 455554 578999999875433467778888888885 3333334332 23456777788888888 887766
Q ss_pred CccHHHHHHHHHHhhcCC
Q 013271 187 GGVIGDMCGYAAASYLRG 204 (446)
Q Consensus 187 GGsv~D~aK~iAa~~~~g 204 (446)
.+ -|+..++......|
T Consensus 200 ~~--~~~~~~~~qa~~~g 215 (395)
T 3h6g_A 200 SH--EMAAGILKQALAMG 215 (395)
T ss_dssp CH--HHHHHHHHHHHHTT
T ss_pred CH--HHHHHHHHHHHHcc
Confidence 55 46676665544333
No 74
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=50.36 E-value=12 Score=41.10 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh---hc-CCCeEEEEcCCc
Q 013271 162 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---YL-RGVSFIQIPTTV 214 (446)
Q Consensus 162 ~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~---~~-~g~p~i~IPTTl 214 (446)
+...++++.++++++| .+|.|||--.++.+..++.. |. .++|+|.||-|.
T Consensus 471 ~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTI 524 (766)
T 3o8o_B 471 ADLGMIAYYFQKYEFD---GLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATL 524 (766)
T ss_dssp GCHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCT
T ss_pred chHHHHHHHHHHhCCC---EEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeecccc
Confidence 3567888999999999 99999998888888776532 11 479999999995
No 75
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=49.51 E-value=1.7e+02 Score=29.57 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=46.9
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHc--CCCCcceE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIES--RLDRRCTF 182 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~--~~dr~~~I 182 (446)
++++.+ +.+++.+|++..-+.. ..+.+++.+++.|+ .|.. ..++. .++.......+..+++. +++ +|
T Consensus 190 ~ll~~f-gw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi--~v~~~~~i~~---~~~~~d~~~~l~~i~~~~~~a~---vi 260 (496)
T 3ks9_A 190 DIVKRY-NWTYVSAVHTEGNYGESGMDAFKELAAQEGL--SIAHSDKIYS---NAGEKSFDRLLRKLRERLPKAR---VV 260 (496)
T ss_dssp HHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTC--EEEEEEEECT---TCCHHHHHHHHHHHHTTTTTTC---EE
T ss_pred HHHHHc-CCcEEEEEEeccHHHHHHHHHHHHHHHHcCc--eEEEEEEECC---CCCHHHHHHHHHHHHhccCceE---EE
Confidence 344444 4688888876555544 78889999999995 3322 22331 24556777888888775 444 77
Q ss_pred EEEcCc
Q 013271 183 VALGGG 188 (446)
Q Consensus 183 IAiGGG 188 (446)
|..|.+
T Consensus 261 i~~~~~ 266 (496)
T 3ks9_A 261 VCFCEG 266 (496)
T ss_dssp EEECCH
T ss_pred EEecCh
Confidence 777665
No 76
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=49.38 E-value=37 Score=37.16 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh--------h------------cCCCeEEEEcCCcC---c
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS--------Y------------LRGVSFIQIPTTVM---A 216 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~--------~------------~~g~p~i~IPTTl~---A 216 (446)
+.+...++++.++++++| .+|.|||--.++.|..++.. . ..++|+|.||-|.- .
T Consensus 83 ~~~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~ 159 (766)
T 3o8o_B 83 KREGRLLGAQHLIEAGVD---ALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMS 159 (766)
T ss_dssp SHHHHHHHHHHHHHHTCC---EEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCT
T ss_pred CHHHHHHHHHHHHHcCCC---EEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCC
Confidence 456677888999999999 99999998888877644311 0 24799999999973 3
Q ss_pred ccccccc
Q 013271 217 QVDSSVG 223 (446)
Q Consensus 217 ~tds~v~ 223 (446)
+||-++|
T Consensus 160 gTD~TiG 166 (766)
T 3o8o_B 160 TTDATIG 166 (766)
T ss_dssp TCSCCBT
T ss_pred CCCCCCC
Confidence 5555554
No 77
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=47.31 E-value=1.5e+02 Score=27.40 Aligned_cols=84 Identities=12% Similarity=0.040 Sum_probs=50.6
Q ss_pred CCEEEEEECCC--chhHHHHHHHHHHhcCCCCe----eEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCc
Q 013271 115 GKKVLVVTNNT--VAPLYLDKVTDALTRGNPNV----SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGG 188 (446)
Q Consensus 115 ~k~vliVtd~~--v~~~~~~~v~~~L~~~gi~~----~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGG 188 (446)
.+++-||.+-. ....+.+-+.+.+.+.| + .+...+... +.+.+...+.++.+.+.++| .||.+|..
T Consensus 8 t~~IGvi~~~~~p~~~~~~~gi~~~l~~~G--y~~g~~v~l~~~~~---~~~~~~~~~~~~~l~~~~vD---gII~~~~~ 79 (302)
T 2qh8_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKG--YEEGKNLEFDYKTA---QGNPAIAVQIARQFVGENPD---VLVGIATP 79 (302)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHHHTT--CCBTTTEEEEEEEC---TTCHHHHHHHHHHHHHTCCS---EEEEESHH
T ss_pred CcEEEEEEeccChhHHHHHHHHHHHHHHcC--CCCCCceEEEEecC---CCCHHHHHHHHHHHHhCCCC---EEEECChH
Confidence 34555554321 12225677788888888 4 334333332 22456667788888888999 99998743
Q ss_pred cHHHHHHHHHHhhcCCCeEEEEc
Q 013271 189 VIGDMCGYAAASYLRGVSFIQIP 211 (446)
Q Consensus 189 sv~D~aK~iAa~~~~g~p~i~IP 211 (446)
.. ..+. ....++|+|.+-
T Consensus 80 ~~----~~~~-~~~~~iPvV~~~ 97 (302)
T 2qh8_A 80 TA----QALV-SATKTIPIVFTA 97 (302)
T ss_dssp HH----HHHH-HHCSSSCEEEEE
T ss_pred HH----HHHH-hcCCCcCEEEEe
Confidence 21 2222 136789999885
No 78
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=46.56 E-value=1.6e+02 Score=26.36 Aligned_cols=85 Identities=6% Similarity=0.025 Sum_probs=54.6
Q ss_pred CCEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 115 GKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
.+++-++..... +..+.+.+.+.+.+.| +.+.. +.. +.+.+.-.+.++.+...++| .||-.+... -
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~--~~~---~~~~~~~~~~~~~l~~~~vd---giIi~~~~~-~ 75 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRG--YIGVL--FDA---NADIEREKTLLRAIGSRGFD---GLILQSFSN-P 75 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTT--CEEEE--EEC---TTCHHHHHHHHHHHHTTTCS---EEEEESSCC-H
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCC--CEEEE--EeC---CCCHHHHHHHHHHHHhCCCC---EEEEecCCc-H
Confidence 455666654332 2236677888888888 44432 322 22445566778888888998 899888777 3
Q ss_pred HHHHHHHHhhcCCCeEEEEcCC
Q 013271 192 DMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+..+. ....++|+|.+-..
T Consensus 76 ~~~~~---l~~~~iPvV~i~~~ 94 (276)
T 3jy6_A 76 QTVQE---ILHQQMPVVSVDRE 94 (276)
T ss_dssp HHHHH---HHTTSSCEEEESCC
T ss_pred HHHHH---HHHCCCCEEEEecc
Confidence 33332 33579999999765
No 79
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=46.56 E-value=69 Score=30.30 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=54.5
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
+++... +.+|+.+|++...+.. ..+.+++.+++.|+.+. ....++.+.. + ....+..+++.++| +|+..
T Consensus 134 ~~l~~~-g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~-~~~~~~~~~~--d---~~~~~~~l~~~~~d---~v~~~ 203 (364)
T 3lop_A 134 TALVTI-GVTRIGVLYQEDALGKEAITGVERTLKAHALAIT-AMASYPRNTA--N---VGPAVDKLLAADVQ---AIFLG 203 (364)
T ss_dssp HHHHHT-TCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCS-EEEEECTTSC--C---CHHHHHHHHHSCCS---EEEEE
T ss_pred HHHHHc-CCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEE-EEEEecCCCc--c---HHHHHHHHHhCCCC---EEEEe
Confidence 445543 5789999987665444 67788889999986432 2233443332 2 33445666777887 88887
Q ss_pred cCccHHHHHHHHHHhhcCC--CeEE
Q 013271 186 GGGVIGDMCGYAAASYLRG--VSFI 208 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g--~p~i 208 (446)
+.+ .+.++++......| +|++
T Consensus 204 ~~~--~~a~~~~~~~~~~g~~~~~i 226 (364)
T 3lop_A 204 ATA--EPAAQFVRQYRARGGEAQLL 226 (364)
T ss_dssp SCH--HHHHHHHHHHHHTTCCCEEE
T ss_pred cCc--HHHHHHHHHHHHcCCCCeEE
Confidence 654 35666665444444 4544
No 80
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=46.35 E-value=1e+02 Score=24.21 Aligned_cols=79 Identities=6% Similarity=0.113 Sum_probs=49.2
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
..+++||.|... ..+.+...|.+.| +.+ ..+. + ..++++.+.+..+| +||. +.+..-.
T Consensus 6 ~~~iLivdd~~~---~~~~l~~~l~~~g--~~v--~~~~------~---~~~a~~~l~~~~~d---lvi~d~~l~~~~g~ 66 (140)
T 3grc_A 6 RPRILICEDDPD---IARLLNLMLEKGG--FDS--DMVH------S---AAQALEQVARRPYA---AMTVDLNLPDQDGV 66 (140)
T ss_dssp CSEEEEECSCHH---HHHHHHHHHHHTT--CEE--EEEC------S---HHHHHHHHHHSCCS---EEEECSCCSSSCHH
T ss_pred CCCEEEEcCCHH---HHHHHHHHHHHCC--CeE--EEEC------C---HHHHHHHHHhCCCC---EEEEeCCCCCCCHH
Confidence 467888876543 3455666677777 443 2332 2 34455556677777 6664 4677888
Q ss_pred HHHHHHHHh-hcCCCeEEEEcC
Q 013271 192 DMCGYAAAS-YLRGVSFIQIPT 212 (446)
Q Consensus 192 D~aK~iAa~-~~~g~p~i~IPT 212 (446)
++++.+... ....+|+|.+-.
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 67 SLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHHHHHHTSGGGTTCEEEEECT
T ss_pred HHHHHHHhCcccCCCCEEEEec
Confidence 888877532 245788887743
No 81
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=45.93 E-value=53 Score=31.64 Aligned_cols=91 Identities=13% Similarity=0.041 Sum_probs=41.7
Q ss_pred hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 106 PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 106 ~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
.++++.+ +.+++.+|+|........+.+.+.+++.|+ ++...........++.......+..+++.+++ +||-.
T Consensus 113 ~~~~~~~-gw~~vaii~d~~~g~~~~~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~---vii~~ 186 (376)
T 3hsy_A 113 LSLIEYY-QWDKFAYLYDSDRGLSTLQAVLDSAAEKKW--QVTAINVGNINNDKKDETYRSLFQDLELKKER---RVILD 186 (376)
T ss_dssp HHHHHHT-TCCEEEEEECSTTCSHHHHHHHHHHHHHTC--EEEEEECTTCC--------------------C---EEEEE
T ss_pred HHHHHhc-CCCEEEEEEeCchhHHHHHHHHHHhhhcCC--eEEEEEeccccccccchhHHHHHHHHhhCCCe---EEEEE
Confidence 4566554 579999999755444477888888988884 33322221111112245667777888888887 78776
Q ss_pred cCccHHHHHHHHHHhhcCC
Q 013271 186 GGGVIGDMCGYAAASYLRG 204 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g 204 (446)
|.+ -+.+.++......|
T Consensus 187 ~~~--~~~~~~~~qa~~~g 203 (376)
T 3hsy_A 187 CER--DKVNDIVDQVITIG 203 (376)
T ss_dssp SCH--HHHHHHHHHHHHHT
T ss_pred CCH--HHHHHHHHHHHHcc
Confidence 654 45555554333333
No 82
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=45.64 E-value=48 Score=31.81 Aligned_cols=82 Identities=6% Similarity=-0.076 Sum_probs=49.5
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcC--CCCeeEEEE-EeCCCCCCCcHHHHHHHHHHHHHcCCCCcceE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRG--NPNVSVENV-ILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 182 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~--gi~~~v~~~-i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~I 182 (446)
+++... +.+|+.+|++...+.. ..+.+.+.+++. |+ ++... .++.+. . +....+..+++.++| +|
T Consensus 135 ~~l~~~-g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~--~vv~~~~~~~~~--~---d~~~~~~~i~~~~~d---~v 203 (387)
T 3i45_A 135 AEAAKL-PITRWATIAPNYEYGQSAVARFKELLLAARPEV--TFVAEQWPALYK--L---DAGPTVQALQQAEPE---GL 203 (387)
T ss_dssp HHHTTS-SCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTC--EEEEEECCCTTC--C---CHHHHHHHHHHTCCS---EE
T ss_pred HHHHHc-CCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCc--EEEeeecCCCCC--c---CHHHHHHHHHhCCCC---EE
Confidence 445444 5789999987665544 677788888877 63 33222 223222 2 344556667778888 88
Q ss_pred EEEcCccHHHHHHHHHHhh
Q 013271 183 VALGGGVIGDMCGYAAASY 201 (446)
Q Consensus 183 IAiGGGsv~D~aK~iAa~~ 201 (446)
+..+.+. |+..++....
T Consensus 204 ~~~~~~~--~~~~~~~~~~ 220 (387)
T 3i45_A 204 FNVLFGA--DLPKFVREGR 220 (387)
T ss_dssp EECCCTT--HHHHHHHHHH
T ss_pred EEcCccH--HHHHHHHHHH
Confidence 8776654 5666654443
No 83
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=44.91 E-value=96 Score=23.88 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=44.7
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 192 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~D 192 (446)
++++||-|... ..+.+...|++.| +++. .+. + ..++++.+.+..+| +||- +.|..-.+
T Consensus 3 ~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~al~~~~~~~~d---lii~D~~~p~~~g~~ 63 (120)
T 3f6p_A 3 KKILVVDDEKP---IADILEFNLRKEG--YEVH--CAH------D---GNEAVEMVEELQPD---LILLDIMLPNKDGVE 63 (120)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHTTCCS---EEEEETTSTTTHHHH
T ss_pred CeEEEEECCHH---HHHHHHHHHHhCC--EEEE--EeC------C---HHHHHHHHhhCCCC---EEEEeCCCCCCCHHH
Confidence 57888877543 3455666777777 4442 232 2 23445555667777 6654 46777788
Q ss_pred HHHHHHHhhcCCCeEEEE
Q 013271 193 MCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 193 ~aK~iAa~~~~g~p~i~I 210 (446)
+++.+.. ...+|+|.+
T Consensus 64 ~~~~lr~--~~~~~ii~~ 79 (120)
T 3f6p_A 64 VCREVRK--KYDMPIIML 79 (120)
T ss_dssp HHHHHHT--TCCSCEEEE
T ss_pred HHHHHHh--cCCCCEEEE
Confidence 8877743 235777666
No 84
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=44.69 E-value=86 Score=28.18 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=51.1
Q ss_pred CCCEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccH
Q 013271 114 QGKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI 190 (446)
Q Consensus 114 ~~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv 190 (446)
.++++++|.-... ++.+.+.+.+.|++.|+ ++....+.. .+.++..+.+ . ++| .|+ +|||..
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~--~v~~~~i~~----~~~~~~~~~l---~--~ad---~I~-l~GG~~ 90 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGL--LVEELDIAT----ESLGEITTKL---R--KND---FIY-VTGGNT 90 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTC--EEEECCTTT----SCHHHHHHHH---H--HSS---EEE-ECCSCH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCC--eEEEEEecC----CChHHHHHHH---H--hCC---EEE-ECCCCH
Confidence 3688888854322 22488999999999994 443322221 2334443333 2 356 555 799999
Q ss_pred HHHHHHHHHh---------hcCCCeEEEEc
Q 013271 191 GDMCGYAAAS---------YLRGVSFIQIP 211 (446)
Q Consensus 191 ~D~aK~iAa~---------~~~g~p~i~IP 211 (446)
.++.+..... +.+|.|++-+.
T Consensus 91 ~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 91 FFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred HHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 9988876432 35799998774
No 85
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=43.52 E-value=1.2e+02 Score=24.32 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=47.8
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
..+++||.|... ..+.+...|.+.| +.+ ..+. + ..++++.+.+..+| +||- +.+..-.
T Consensus 14 ~~~ILivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~a~~~l~~~~~d---lvi~D~~l~~~~g~ 74 (153)
T 3hv2_A 14 RPEILLVDSQEV---ILQRLQQLLSPLP--YTL--HFAR------D---ATQALQLLASREVD---LVISAAHLPQMDGP 74 (153)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHTTSS--CEE--EEES------S---HHHHHHHHHHSCCS---EEEEESCCSSSCHH
T ss_pred CceEEEECCCHH---HHHHHHHHhcccC--cEE--EEEC------C---HHHHHHHHHcCCCC---EEEEeCCCCcCcHH
Confidence 457888876543 4566777788877 443 2332 2 34444555667777 6654 4677888
Q ss_pred HHHHHHHHhhcCCCeEEEE
Q 013271 192 DMCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~I 210 (446)
++++.+... ...+|+|.+
T Consensus 75 ~~~~~l~~~-~~~~~ii~~ 92 (153)
T 3hv2_A 75 TLLARIHQQ-YPSTTRILL 92 (153)
T ss_dssp HHHHHHHHH-CTTSEEEEE
T ss_pred HHHHHHHhH-CCCCeEEEE
Confidence 888877543 356788776
No 86
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=43.23 E-value=81 Score=30.62 Aligned_cols=81 Identities=9% Similarity=-0.028 Sum_probs=50.1
Q ss_pred CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 114 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
+.+++.+|.+...+.. ..+.+.+.+++.|+ ++.. ..++.+. .++...+..+++.++| +|+-.|- ..-
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~--~vv~~~~~~~~~-----~d~~~~l~~i~~~~~d---~v~~~~~-~~~ 231 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGY--DVSLFETVAIPV-----SDWGPTLAKLRADPPA---VIVVTHF-YPQ 231 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTC--EEEEEEECCSSC-----SCCHHHHHHHHHSCCS---EEEECCC-CHH
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCC--eEEEEecCCCCC-----ccHHHHHHHHHhcCCC---EEEEccc-cCc
Confidence 3589999998876655 78888899999885 4322 2333332 2345566777888888 6665432 233
Q ss_pred HHHHHHHHhhcCCC
Q 013271 192 DMCGYAAASYLRGV 205 (446)
Q Consensus 192 D~aK~iAa~~~~g~ 205 (446)
|.+.++-.....|.
T Consensus 232 ~~~~~~~~~~~~g~ 245 (419)
T 3h5l_A 232 DQALFMNQFMTDPT 245 (419)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHHcCC
Confidence 55555544444444
No 87
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=43.23 E-value=49 Score=28.81 Aligned_cols=88 Identities=19% Similarity=0.144 Sum_probs=48.7
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc--CccHHH--
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG--GGVIGD-- 192 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG--GGsv~D-- 192 (446)
|+.||..+.-.+...+--.+.|.+.|++.++..+.+|+ .+|.=-.+-..++..++| .||++| |++..+
T Consensus 4 ri~IV~arfn~~~Ll~gA~~~L~~~G~~~~i~~~~VPG-----afEiP~aak~la~~~~yD---avIaLG~VG~T~Hfd~ 75 (156)
T 2b99_A 4 KVGIVDTTFARVDMASIAIKKLKELSPNIKIIRKTVPG-----IKDLPVACKKLLEEEGCD---IVMALGMPGKAEKDKV 75 (156)
T ss_dssp EEEEEEESSCSSCCHHHHHHHHHHHCTTCEEEEEEESS-----GGGHHHHHHHHHHHSCCS---EEEEEECCCSSHHHHH
T ss_pred EEEEEEEecchHHHHHHHHHHHHHcCCCCeEEEEECCc-----HHHHHHHHHHHHhcCCCC---EEEEecccCCcchhHH
Confidence 56666554332335566777788888644443355564 333333333333456677 999998 555443
Q ss_pred ----HHHHHH-HhhcCCCeEEEEcCC
Q 013271 193 ----MCGYAA-ASYLRGVSFIQIPTT 213 (446)
Q Consensus 193 ----~aK~iA-a~~~~g~p~i~IPTT 213 (446)
+++.+. .....++|++.. ||
T Consensus 76 Va~~vs~Gl~~v~L~~~vPV~~g-t~ 100 (156)
T 2b99_A 76 CAHEASLGLMLAQLMTNKHIIEV-FV 100 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEE-EC
T ss_pred HHHHHHHHHHHHHhhhCCCEEEE-eC
Confidence 222221 123568998888 54
No 88
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=42.33 E-value=61 Score=28.52 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=39.9
Q ss_pred chhHHHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHc-CCCCcceEEEEcCccHH--HHHHH
Q 013271 126 VAPLYLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIG--DMCGY 196 (446)
Q Consensus 126 v~~~~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~-~~dr~~~IIAiGGGsv~--D~aK~ 196 (446)
+.+.-...+.+.|++.|. ++.. .++++ +.+.+.+.++.+.+. ++| +||--||=++. |..+-
T Consensus 37 i~Dsn~~~L~~~l~~~G~--~v~~~~iv~D-----d~~~I~~al~~a~~~~~~D---lVittGG~s~g~~D~t~e 101 (178)
T 2pjk_A 37 IVDESGDIIKQLLIENGH--KIIGYSLVPD-----DKIKILKAFTDALSIDEVD---VIISTGGTGYSPTDITVE 101 (178)
T ss_dssp CCCHHHHHHHHHHHHTTC--EEEEEEEECS-----CHHHHHHHHHHHHTCTTCC---EEEEESCCSSSTTCCHHH
T ss_pred EeehHHHHHHHHHHHCCC--EEEEEEEeCC-----CHHHHHHHHHHHHhcCCCC---EEEECCCCCCCCCcchHH
Confidence 444556677888888884 4433 34443 457777777766554 577 99999997766 44443
No 89
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=42.11 E-value=1.6e+02 Score=26.58 Aligned_cols=87 Identities=9% Similarity=0.072 Sum_probs=54.5
Q ss_pred CCEEEEEECCCch---hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 115 GKKVLVVTNNTVA---PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~---~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
.+++.++...... ..+.+.+.+.+.+.| +.+. ++.. +.+.+.-.+.++.+...++| .||-.+....-
T Consensus 8 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g--~~~~--~~~~---~~~~~~~~~~~~~l~~~~vd---giIi~~~~~~~ 77 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFAEVASGVESEARHKG--YSVL--LANT---AEDIVREREAVGQFFERRVD---GLILAPSEGEH 77 (291)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTT--CEEE--EEEC---TTCHHHHHHHHHHHHHTTCS---EEEECCCSSCC
T ss_pred CcEEEEEECCCcchHHHHHHHHHHHHHHHCC--CEEE--EEeC---CCCHHHHHHHHHHHHHCCCC---EEEEeCCCCCh
Confidence 4556666543222 235677788888888 4443 3332 12445667778888888999 88887766533
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCc
Q 013271 192 DMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
+.. ......++|+|.+-+..
T Consensus 78 ~~~---~~~~~~~iPvV~~~~~~ 97 (291)
T 3egc_A 78 DYL---RTELPKTFPIVAVNREL 97 (291)
T ss_dssp HHH---HHSSCTTSCEEEESSCC
T ss_pred HHH---HHhhccCCCEEEEeccc
Confidence 332 22345799999997663
No 90
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=42.03 E-value=76 Score=29.62 Aligned_cols=90 Identities=10% Similarity=0.031 Sum_probs=52.2
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
+++.+. +.+|+.+|++...+.. ..+.+++.|++.|+.+ +....++.+.. ++ ...++.+++.++| +|+..
T Consensus 128 ~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v-~~~~~~~~~~~--~~---~~~~~~l~~~~~d---av~~~ 197 (362)
T 3snr_A 128 EHMKKN-NVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKI-VGEERFARPDT--SV---AGQALKLVAANPD---AILVG 197 (362)
T ss_dssp HHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEE-EEEEEECTTCS--CC---HHHHHHHHHHCCS---EEEEE
T ss_pred HHHHhc-CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEE-EEEeecCCCCC--CH---HHHHHHHHhcCCC---EEEEe
Confidence 344444 5789998877655444 6778888999999532 22233443332 32 3344555667787 88887
Q ss_pred cCccHHHHHHHHHHhhcCC--CeEE
Q 013271 186 GGGVIGDMCGYAAASYLRG--VSFI 208 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g--~p~i 208 (446)
+.+ .+..+++......| +|++
T Consensus 198 ~~~--~~a~~~~~~~~~~g~~~p~i 220 (362)
T 3snr_A 198 ASG--TAAALPQTTLRERGYNGLIY 220 (362)
T ss_dssp CCH--HHHHHHHHHHHHTTCCSEEE
T ss_pred cCc--chHHHHHHHHHHcCCCccEE
Confidence 633 34555554444444 4553
No 91
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=41.67 E-value=70 Score=29.68 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=49.7
Q ss_pred CCCEEEEEECCCchh---HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccH
Q 013271 114 QGKKVLVVTNNTVAP---LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI 190 (446)
Q Consensus 114 ~~k~vliVtd~~v~~---~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv 190 (446)
.+.++++|+.....+ ...+.+++.+...|. ++++.+.++. ..=.+.+.++.+.+.+.. ++++|-++||.-
T Consensus 33 ~~d~ViLv~~~~~~~~~~~A~~~i~~~l~~~~~-i~~e~~~vd~---~df~~~v~~i~~~i~~~~---~~iivnlsGG~R 105 (244)
T 2wte_A 33 KEDSLVIVVPSPIVSGTRAAIESLRAQISRLNY-PPPRIYEIEI---TDFNLALSKILDIILTLP---EPIISDLTMGMR 105 (244)
T ss_dssp TTSEEEEEEESSCCHHHHHHHHHHHHHHHHHTC-CCEEEEEECC---CSHHHHHHHHHHHHTTSC---SSEEEECSSSCH
T ss_pred CCCEEEEEeCCCcchhHHHHHHHHHHHHHHcCC-CceEEEEECC---ccHHHHHHHHHHHHhhcC---CcEEEEecCCch
Confidence 356888888654322 278888888886652 2455555542 223455677777766632 248887887765
Q ss_pred -HHHHHHHHHhh
Q 013271 191 -GDMCGYAAASY 201 (446)
Q Consensus 191 -~D~aK~iAa~~ 201 (446)
+-++-+.|+..
T Consensus 106 il~l~~l~A~~l 117 (244)
T 2wte_A 106 MINTLILLGIIV 117 (244)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 55666666543
No 92
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=41.29 E-value=88 Score=29.92 Aligned_cols=92 Identities=11% Similarity=0.141 Sum_probs=53.9
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
+++.+..+.+|+.+|++...+.. ..+.+++.+++.|+.+ +....++.+.. + ....+..+++.++| +|+..
T Consensus 135 ~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v-~~~~~~~~~~~--d---~~~~~~~l~~~~~d---av~~~ 205 (392)
T 3lkb_A 135 EYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQI-VDVQEVGSGNL--D---NTALLKRFEQAGVE---YVVHQ 205 (392)
T ss_dssp HHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEE-EEEEECCTTCC--C---CHHHHHHHHHTTCC---EEEEE
T ss_pred HHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeE-EEEEeeCCCCc--C---HHHHHHHHHhcCCC---EEEEe
Confidence 34443214799999998765544 6778888898888532 12223343322 2 33445566777888 88866
Q ss_pred cCccHHHHHHHHHHhhcCC--CeEEE
Q 013271 186 GGGVIGDMCGYAAASYLRG--VSFIQ 209 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g--~p~i~ 209 (446)
+.+ .+++.++......| +|++.
T Consensus 206 ~~~--~~a~~~~~~~~~~g~~~~~~~ 229 (392)
T 3lkb_A 206 NVA--GPVANILKDAKRLGLKMRHLG 229 (392)
T ss_dssp SCH--HHHHHHHHHHHHTTCCCEEEE
T ss_pred cCc--chHHHHHHHHHHcCCCceEEE
Confidence 543 45666665554444 45543
No 93
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=41.05 E-value=36 Score=31.59 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHH-HHHHHhh-cCCCeEEEEcCCc
Q 013271 159 KNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC-GYAAASY-LRGVSFIQIPTTV 214 (446)
Q Consensus 159 ~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~a-K~iAa~~-~~g~p~i~IPTTl 214 (446)
||-+...+.+.+..- ..-++..+|++|.||+.... ..++... ..++.+..|||+.
T Consensus 2 ~~qd~~K~~aa~~A~-~~V~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l~i~~V~tS~ 58 (228)
T 4gmk_A 2 PNQDELKQLVGTKAV-EWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGLDIVGVTTSI 58 (228)
T ss_dssp CHHHHHHHHHHHHHG-GGCCTTCEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEESSH
T ss_pred cCHHHHHHHHHHHHH-HhCCCCCEEEECchHHHHHHHHHHHHHHhhcCCcEEEEeCcH
Confidence 455666655554332 23456799999999998744 3333222 2477899999984
No 94
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=39.92 E-value=2.1e+02 Score=25.69 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=53.1
Q ss_pred CCEEEEEECCCch---hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 115 GKKVLVVTNNTVA---PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~---~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
.+++-+|...... ..+.+.+.+.+++.| +++. ++.. +.+.+.-.+.++.+...++| .||-.+.....
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g--~~~~--~~~~---~~~~~~~~~~~~~l~~~~vd---giIi~~~~~~~ 74 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLG--GTAI--ALDA---GRNDQTQVSQIQTLIAQKPD---AIIEQLGNLDV 74 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTT--CEEE--EEEC---TTCHHHHHHHHHHHHHHCCS---EEEEESSCHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcC--CEEE--EEcC---CCCHHHHHHHHHHHHHcCCC---EEEEeCCChhh
Confidence 4556666554322 225677888888988 4443 3322 22445666777888888999 88877654221
Q ss_pred HHHHHHHHhhcCCCeEEEEcCC
Q 013271 192 DMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~IPTT 213 (446)
. ...+......++|+|.+-+.
T Consensus 75 ~-~~~~~~~~~~~iPvV~~~~~ 95 (291)
T 3l49_A 75 L-NPWLQKINDAGIPLFTVDTA 95 (291)
T ss_dssp H-HHHHHHHHHTTCCEEEESCC
T ss_pred h-HHHHHHHHHCCCcEEEecCC
Confidence 1 11222234579999999766
No 95
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=39.33 E-value=1.2e+02 Score=26.29 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=50.7
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc----C
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG----G 187 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG----G 187 (446)
+.|+.||..+.-.. ...+-..+.|.+.|++-.+..+.+|+ .+|.=-.+-..++..++| .||++| |
T Consensus 13 ~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPG-----afEiP~aa~~la~~~~yD---avIaLG~VIrG 84 (156)
T 1c2y_A 13 SFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPG-----AYELGVTAQALGKSGKYH---AIVCLGAVVKG 84 (156)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEESS-----HHHHHHHHHHHHHTTCCS---EEEEEEECCCC
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCCceEEEECCc-----HHHHHHHHHHHHhcCCCC---EEEEecccccC
Confidence 45677777664333 35666777888888531344555564 444333333333445677 999998 6
Q ss_pred ccHHH------HHHHHH-HhhcCCCeEEEEcCC
Q 013271 188 GVIGD------MCGYAA-ASYLRGVSFIQIPTT 213 (446)
Q Consensus 188 Gsv~D------~aK~iA-a~~~~g~p~i~IPTT 213 (446)
++.-+ +++.+. .....++|++.-=.|
T Consensus 85 ~T~Hfd~Va~~v~~gl~~v~L~~~vPV~~GVLT 117 (156)
T 1c2y_A 85 DTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLT 117 (156)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 66433 222221 123467887665434
No 96
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=39.16 E-value=46 Score=37.19 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhh--------------------cCCCeEEEEcCCcC---c
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVM---A 216 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~--------------------~~g~p~i~IPTTl~---A 216 (446)
+.+...++++.++++++| .+|.|||--.++.|..++..| ..++++|.||-|.- .
T Consensus 261 ~~~~~~~~~~~L~~~gId---~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~ 337 (941)
T 3opy_B 261 ERSGRLKACKNMIDMGID---ALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMS 337 (941)
T ss_dssp SHHHHHHHHHHHHHHTCC---EEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCS
T ss_pred CHHHHHHHHHHHHHcCCC---EEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCC
Confidence 345667788899999999 999999988888776543211 24799999999863 3
Q ss_pred ccccccc
Q 013271 217 QVDSSVG 223 (446)
Q Consensus 217 ~tds~v~ 223 (446)
+||-++|
T Consensus 338 gTD~TiG 344 (941)
T 3opy_B 338 STDATIG 344 (941)
T ss_dssp SCSSCEE
T ss_pred CCCCCCC
Confidence 4554443
No 97
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=38.84 E-value=65 Score=30.78 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=52.7
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
+++.+. +.+|+.+|++...+.. ..+.+++.+++.|+++ +....++.+.. ++ ...+..+++.++| +|+..
T Consensus 135 ~~l~~~-g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v-~~~~~~~~~~~--d~---~~~l~~i~~~~~d---~v~~~ 204 (379)
T 3n0w_A 135 QAQLAK-GYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQI-VGSVRFPFETQ--DF---SSYLLQAKASGAQ---LIVST 204 (379)
T ss_dssp HHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEE-EEEEEECTTCC--CC---HHHHHHHHHHTCS---EEEEC
T ss_pred HHHHHc-CCcEEEEEecccchhHHHHHHHHHHHHHcCCEE-EEEEeCCCCCC--CH---HHHHHHHHHCCCC---EEEEe
Confidence 445544 5789999987665544 6788888898888532 12233444432 33 3355666777888 88776
Q ss_pred cCccHHHHHHHHHHhhcCCC
Q 013271 186 GGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g~ 205 (446)
+.+ .|.+.++......|+
T Consensus 205 ~~~--~~~~~~~~~~~~~g~ 222 (379)
T 3n0w_A 205 SGG--AANINIMKQAREFGL 222 (379)
T ss_dssp CCH--HHHHHHHHHHHHTTC
T ss_pred ccc--chHHHHHHHHHHcCC
Confidence 553 466666654444443
No 98
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=38.84 E-value=1.4e+02 Score=26.91 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhcC-CCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccH--HHHHHHHHHhhcCC
Q 013271 128 PLYLDKVTDALTRG-NPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI--GDMCGYAAASYLRG 204 (446)
Q Consensus 128 ~~~~~~v~~~L~~~-gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv--~D~aK~iAa~~~~g 204 (446)
..+.+.+.+.+++. | +.+........ ..+.+...+.++.+...++| .||-.+...- -+..+. ....+
T Consensus 25 ~~~~~gi~~~a~~~~g--~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~vd---giii~~~~~~~~~~~~~~---~~~~~ 94 (304)
T 3gbv_A 25 TDVQKGIREAVTTYSD--FNISANITHYD--PYDYNSFVATSQAVIEEQPD---GVMFAPTVPQYTKGFTDA---LNELG 94 (304)
T ss_dssp HHHHHHHHHHHHHTGG--GCEEEEEEEEC--SSCHHHHHHHHHHHHTTCCS---EEEECCSSGGGTHHHHHH---HHHHT
T ss_pred HHHHHHHHHHHHHHHh--CCeEEEEEcCC--CCCHHHHHHHHHHHHhcCCC---EEEECCCChHHHHHHHHH---HHHCC
Confidence 33677778888877 7 44444333211 23556667778888888998 8888876432 222222 23459
Q ss_pred CeEEEEcCC
Q 013271 205 VSFIQIPTT 213 (446)
Q Consensus 205 ~p~i~IPTT 213 (446)
+|+|.+-+.
T Consensus 95 iPvV~~~~~ 103 (304)
T 3gbv_A 95 IPYIYIDSQ 103 (304)
T ss_dssp CCEEEESSC
T ss_pred CeEEEEeCC
Confidence 999999765
No 99
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=38.34 E-value=41 Score=32.52 Aligned_cols=87 Identities=9% Similarity=0.020 Sum_probs=54.8
Q ss_pred hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 106 PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 106 ~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
.++++.+ +.+++.+|+|........+.+.+.+++.|+ .+....+. ..+.......+..+++.++| +||..
T Consensus 120 ~~~~~~~-g~~~v~ii~d~~~g~~~~~~~~~~~~~~g~--~v~~~~~~----~~~~~d~~~~l~~ik~~~~~---vii~~ 189 (384)
T 3saj_A 120 ISIIDHY-KWQTFVYIYDADRGLSVLQRVLDTAAEKNW--QVTAVNIL----TTTEEGYRMLFQDLEKKKER---LVVVD 189 (384)
T ss_dssp HHHHHHT-TCCEEEEEECSTTCSHHHHHHHHHHHHHTC--EEEEEEGG----GCCHHHHHHTTTTCCSCSEE---EEEEE
T ss_pred HHHHHHC-CCcEEEEEEeCchhHHHHHHHHHHhhhcCc--eEEEEEec----cCCchhHHHHHHHHhccCCc---EEEEE
Confidence 4566554 578999999875444478888889998884 44333222 23445677777777776666 88777
Q ss_pred cCccHHHHHHHHHHhhcCC
Q 013271 186 GGGVIGDMCGYAAASYLRG 204 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g 204 (446)
|.+ -|++.++-.....|
T Consensus 190 ~~~--~~~~~~~~qa~~~g 206 (384)
T 3saj_A 190 CES--ERLNAILGQIVKLE 206 (384)
T ss_dssp CCG--GGHHHHHHHHHHTC
T ss_pred cCH--HHHHHHHHHHHHcC
Confidence 655 35555554443334
No 100
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=38.26 E-value=81 Score=29.53 Aligned_cols=75 Identities=11% Similarity=0.052 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhcCCCC--eeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCC
Q 013271 128 PLYLDKVTDALTRGNPN--VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 128 ~~~~~~v~~~L~~~gi~--~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~ 205 (446)
+...+-+++.|++.|.. .++++.... . +-+......+++.+...++| +||++|.-. +.+++ .....+
T Consensus 23 d~~~~G~~~~L~~~G~~~g~nv~~~~~~-a--~gd~~~~~~~~~~l~~~~~D---lIiai~t~a----a~a~~-~~~~~i 91 (302)
T 3lkv_A 23 DATRQGLLDGLKAKGYEEGKNLEFDYKT-A--QGNPAIAVQIARQFVGENPD---VLVGIATPT----AQALV-SATKTI 91 (302)
T ss_dssp HHHHHHHHHHHHHTTCCBTTTEEEEEEE-C--TTCHHHHHHHHHHHHTTCCS---EEEEESHHH----HHHHH-HHCSSS
T ss_pred HHHHHHHHHHHHhhCcccCCcEEEEEEe-C--CCCHHHHHHHHHHHHhcCCc---EEEEcCCHH----HHHHH-hhcCCC
Confidence 33566778888887721 023333322 2 33668888899999988888 999997543 33332 234678
Q ss_pred eEEEEcCC
Q 013271 206 SFIQIPTT 213 (446)
Q Consensus 206 p~i~IPTT 213 (446)
|++..-.|
T Consensus 92 PVVf~~v~ 99 (302)
T 3lkv_A 92 PIVFTAVT 99 (302)
T ss_dssp CEEEEEES
T ss_pred CeEEEecC
Confidence 88776444
No 101
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=38.08 E-value=86 Score=30.58 Aligned_cols=82 Identities=12% Similarity=0.066 Sum_probs=52.7
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
++++.+ +.+++.+|++...+.. ..+.+.+.+++.|+ ++.. ..++ ++ ....+..+++.+++ +||.
T Consensus 147 ~~~~~~-g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~--~v~~~~~~~-----~d---~~~~l~~i~~~~~~---vii~ 212 (433)
T 4f11_A 147 KLLKHY-QWKRVGTLTQDVQRFSEVRNDLTGVLYGEDI--EISDTESFS-----ND---PCTSVKKLKGNDVR---IILG 212 (433)
T ss_dssp HHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHSSSSSC--EEEEEEEES-----SC---CHHHHHHHHHTTCC---EEEE
T ss_pred HHHHHc-CCcEEEEEEecchhhHHHHHHHHHHHHHcCc--eEEEEeccC-----cC---HHHHHHHHhhCCCe---EEEE
Confidence 455544 5789999988765544 77888888998885 3322 2233 12 33556677788888 8887
Q ss_pred EcCccHHHHHHHHHHhhcCC
Q 013271 185 LGGGVIGDMCGYAAASYLRG 204 (446)
Q Consensus 185 iGGGsv~D~aK~iAa~~~~g 204 (446)
.|.+ -|+..++......|
T Consensus 213 ~~~~--~~~~~~~~~a~~~g 230 (433)
T 4f11_A 213 QFDQ--NMAAKVFCCAYEEN 230 (433)
T ss_dssp ECCH--HHHHHHHHHHHHTT
T ss_pred eCcH--HHHHHHHHHHHHcC
Confidence 7654 56777665554444
No 102
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=37.76 E-value=1.3e+02 Score=28.12 Aligned_cols=91 Identities=16% Similarity=0.090 Sum_probs=52.4
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
+++.+. +.+|+.+|++...+.. ..+.+++.|++.|+.+. ....++.+.. ++ ...++.+++.++| +|+..
T Consensus 132 ~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~-~~~~~~~~~~--~~---~~~~~~l~~~~~d---~i~~~ 201 (358)
T 3hut_A 132 AWMIGD-GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVV-VNEEVPPGNR--RF---DDVIDEIEDEAPQ---AIYLA 201 (358)
T ss_dssp HHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE-EEEEECTTCC--CC---HHHHHHHHHHCCS---EEEEE
T ss_pred HHHHHc-CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEE-EEEecCCCCc--cH---HHHHHHHHhcCCC---EEEEc
Confidence 344444 5789999876554443 67788889999985321 2223443332 32 3345566667787 88887
Q ss_pred cCccHHHHHHHHHHhhcCC--CeEEE
Q 013271 186 GGGVIGDMCGYAAASYLRG--VSFIQ 209 (446)
Q Consensus 186 GGGsv~D~aK~iAa~~~~g--~p~i~ 209 (446)
+.+ -++.+++.+....| +|++.
T Consensus 202 ~~~--~~a~~~~~~~~~~g~~~p~~~ 225 (358)
T 3hut_A 202 MAY--EDAAPFLRALRARGSALPVYG 225 (358)
T ss_dssp SCH--HHHHHHHHHHHHTTCCCCEEE
T ss_pred cCc--hHHHHHHHHHHHcCCCCcEEe
Confidence 765 24444444443444 45543
No 103
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=37.66 E-value=91 Score=29.57 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=51.5
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeE-EEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSV-ENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v-~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
+++.+. +.+|+.+|++...+.. ..+.+.+.+++.|+ ++ ....++.+.. + ....+..+++.++| +|+.
T Consensus 133 ~~l~~~-g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~--~v~~~~~~~~~~~--d---~~~~l~~i~~~~~d---~v~~ 201 (375)
T 3i09_A 133 SAVVKQ-GGKTWFFLTADYAFGKALEKNTADVVKANGG--KVLGEVRHPLSAS--D---FSSFLLQAQSSKAQ---ILGL 201 (375)
T ss_dssp HHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTC--EEEEEEEECTTCS--C---CHHHHHHHHHTCCS---EEEE
T ss_pred HHHHHc-CCceEEEEecccHHHHHHHHHHHHHHHHcCC--EEeeeeeCCCCCc--c---HHHHHHHHHhCCCC---EEEE
Confidence 455554 5789999987665544 67888889999985 33 2233443332 3 33455666777888 8877
Q ss_pred EcCccHHHHHHHHHHhhcCC
Q 013271 185 LGGGVIGDMCGYAAASYLRG 204 (446)
Q Consensus 185 iGGGsv~D~aK~iAa~~~~g 204 (446)
.+.+ -|...++......|
T Consensus 202 ~~~~--~~~~~~~~~~~~~g 219 (375)
T 3i09_A 202 ANAG--GDTVNAIKAAKEFG 219 (375)
T ss_dssp ECCH--HHHHHHHHHHHHTT
T ss_pred ecCc--hhHHHHHHHHHHcC
Confidence 6654 35555554443333
No 104
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=37.39 E-value=99 Score=28.43 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCCe---eEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCe
Q 013271 130 YLDKVTDALTRGNPNV---SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 206 (446)
Q Consensus 130 ~~~~v~~~L~~~gi~~---~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p 206 (446)
+.+-+.+.+.+.| + .+....... +.+.+...+.++.+.+.++| .||.+|... ...+. ....++|
T Consensus 19 i~~gi~~~l~~~g--y~g~~v~l~~~~~---~~~~~~~~~~~~~l~~~~vD---gII~~~~~~----~~~~~-~~~~~iP 85 (295)
T 3lft_A 19 IYKGIQDGLAEEG--YKDDQVKIDFMNS---EGDQSKVATMSKQLVANGND---LVVGIATPA----AQGLA-SATKDLP 85 (295)
T ss_dssp HHHHHHHHHHHTT--CCGGGEEEEEEEC---TTCHHHHHHHHHHHTTSSCS---EEEEESHHH----HHHHH-HHCSSSC
T ss_pred HHHHHHHHHHHcC--CCCCceEEEEecC---CCCHHHHHHHHHHHHhcCCC---EEEECCcHH----HHHHH-HcCCCCC
Confidence 5677888899998 5 444433332 22456677788888888888 999987322 22222 2357899
Q ss_pred EEEEcC
Q 013271 207 FIQIPT 212 (446)
Q Consensus 207 ~i~IPT 212 (446)
+|.+-.
T Consensus 86 vV~~~~ 91 (295)
T 3lft_A 86 VIMAAI 91 (295)
T ss_dssp EEEESC
T ss_pred EEEEec
Confidence 998853
No 105
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=37.26 E-value=2.6e+02 Score=26.80 Aligned_cols=84 Identities=10% Similarity=0.059 Sum_probs=53.1
Q ss_pred hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 106 PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 106 ~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
.++++.+ +.+++.+|+|........+.+.+.+++.|+ .+....... . ....+....+..+++.+++ +||-.
T Consensus 122 ~~~~~~~-gw~~vaii~d~~~g~~~~~~~~~~~~~~g~--~v~~~~~~~--~-~~~~d~~~~l~~ik~~~~~---vii~~ 192 (389)
T 3o21_A 122 LSLLSYY-KWEKFVYLYDTERGFSVLQAIMEAAVQNNW--QVTARSVGN--I-KDVQEFRRIIEEMDRRQEK---RYLID 192 (389)
T ss_dssp HHHHHHH-TCCEEEEEECSTTCSHHHHHHHHHHHHTTC--EEEEEECTT--C-CCTHHHHHHHHHHHTTTCC---EEEEE
T ss_pred HHHHHhC-CCCEEEEEEcCcHHHHHHHHHHHHhhcCCC--eEEEEEecC--C-CCcHHHHHHHHHHHhCCCe---EEEEE
Confidence 4566554 579999999765444477888889998885 333222221 1 1224677888888988888 77776
Q ss_pred cCccHHHHHHHHHHh
Q 013271 186 GGGVIGDMCGYAAAS 200 (446)
Q Consensus 186 GGGsv~D~aK~iAa~ 200 (446)
|.+ -+.+.++...
T Consensus 193 ~~~--~~~~~i~~qa 205 (389)
T 3o21_A 193 CEV--ERINTILEQV 205 (389)
T ss_dssp SCH--HHHHHHHHHH
T ss_pred CCH--HHHHHHHHHH
Confidence 554 3455554433
No 106
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=36.96 E-value=1.8e+02 Score=28.36 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcC
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPT 212 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPT 212 (446)
...+.++.+.+++.++| +|+.+|+-... ++...| +...++|++.+-.
T Consensus 97 ~~~~~~l~~~l~~~kPD---vVi~~g~~~~~-~~~~~a-a~~~~IPv~h~~a 143 (396)
T 3dzc_A 97 SKILLGMQQVLSSEQPD---VVLVHGDTATT-FAASLA-AYYQQIPVGHVEA 143 (396)
T ss_dssp HHHHHHHHHHHHHHCCS---EEEEETTSHHH-HHHHHH-HHTTTCCEEEETC
T ss_pred HHHHHHHHHHHHhcCCC---EEEEECCchhH-HHHHHH-HHHhCCCEEEEEC
Confidence 34567777788888888 99999865432 232233 3567899887643
No 107
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=36.94 E-value=36 Score=37.31 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHh------------------h--cCCCeEEEEcCCcC---c
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS------------------Y--LRGVSFIQIPTTVM---A 216 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~------------------~--~~g~p~i~IPTTl~---A 216 (446)
+.+...++++.++++++| .+|.|||--.++.|..++.. + ..++|+|.||-|.- .
T Consensus 84 ~~~~~~~~~~~l~~~~Id---~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~ 160 (787)
T 3o8o_A 84 KREGRRQAAGNLISQGID---ALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMS 160 (787)
T ss_dssp SHHHHHHHHHHHHHHTEE---EEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCT
T ss_pred CHHHHHHHHHHHHHcCCC---EEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCC
Confidence 456677888999999999 99999998888888654311 1 13799999999963 3
Q ss_pred ccccccc
Q 013271 217 QVDSSVG 223 (446)
Q Consensus 217 ~tds~v~ 223 (446)
+||-++|
T Consensus 161 gTD~TiG 167 (787)
T 3o8o_A 161 GTDSTIG 167 (787)
T ss_dssp TSSCCEE
T ss_pred CCCCCCC
Confidence 4554444
No 108
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=36.77 E-value=1.3e+02 Score=26.03 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHHc-CCCCcceEEEEcCccHH--HHHHHH
Q 013271 129 LYLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIG--DMCGYA 197 (446)
Q Consensus 129 ~~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~~-~~dr~~~IIAiGGGsv~--D~aK~i 197 (446)
.-...+.+.|.+.|. ++. ..++++ +.+.+.+.++.+.+. ++| +||--||=++. |+.+-+
T Consensus 28 ~n~~~l~~~L~~~G~--~v~~~~iv~D-----d~~~i~~~l~~a~~~~~~D---lVittGG~g~~~~D~t~ea 90 (172)
T 1mkz_A 28 TSGHYLRDSAQEAGH--HVVDKAIVKE-----NRYAIRAQVSAWIASDDVQ---VVLITGGTGLTEGDQAPEA 90 (172)
T ss_dssp HHHHHHHHHHHHTTC--EEEEEEEECS-----CHHHHHHHHHHHHHSSSCC---EEEEESCCSSSTTCCHHHH
T ss_pred ccHHHHHHHHHHCCC--eEeEEEEeCC-----CHHHHHHHHHHHHhcCCCC---EEEeCCCCCCCCCCCHHHH
Confidence 356678888888884 443 334443 457777777776664 577 99999998765 555443
No 109
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=36.42 E-value=1.3e+02 Score=23.21 Aligned_cols=77 Identities=19% Similarity=0.093 Sum_probs=46.5
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 192 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~D 192 (446)
++++||-|... ..+.+...|++.| +++ ..+. + ..++++.+.+..+| +||- +.|..-.+
T Consensus 3 ~~ILivdd~~~---~~~~l~~~l~~~g--~~v--~~~~------~---~~~al~~l~~~~~d---lvllD~~~p~~~g~~ 63 (122)
T 3gl9_A 3 KKVLLVDDSAV---LRKIVSFNLKKEG--YEV--IEAE------N---GQIALEKLSEFTPD---LIVLXIMMPVMDGFT 63 (122)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEE--EEES------S---HHHHHHHHTTBCCS---EEEECSCCSSSCHHH
T ss_pred ceEEEEeCCHH---HHHHHHHHHHHCC--cEE--EEeC------C---HHHHHHHHHhcCCC---EEEEeccCCCCcHHH
Confidence 57888877543 3455666677777 444 2333 2 33455556667777 6654 46777888
Q ss_pred HHHHHHHhh-cCCCeEEEEc
Q 013271 193 MCGYAAASY-LRGVSFIQIP 211 (446)
Q Consensus 193 ~aK~iAa~~-~~g~p~i~IP 211 (446)
+++.+-... ...+|+|.+-
T Consensus 64 ~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 64 VLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp HHHHHHTSTTTTTSCEEEEE
T ss_pred HHHHHHhcccccCCCEEEEe
Confidence 888764321 2467888763
No 110
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=36.36 E-value=1.5e+02 Score=22.91 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=39.6
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
..+++||.|... ..+.+.+.|.+.| +.+ ..+. + ..++.+.+.+..+| +||. +.++...
T Consensus 6 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~a~~~l~~~~~d---lii~d~~l~~~~g~ 66 (132)
T 3lte_A 6 SKRILVVDDDQA---MAAAIERVLKRDH--WQV--EIAH------N---GFDAGIKLSTFEPA---IMTLDLSMPKLDGL 66 (132)
T ss_dssp -CEEEEECSCHH---HHHHHHHHHHHTT--CEE--EEES------S---HHHHHHHHHHTCCS---EEEEESCBTTBCHH
T ss_pred CccEEEEECCHH---HHHHHHHHHHHCC--cEE--EEeC------C---HHHHHHHHHhcCCC---EEEEecCCCCCCHH
Confidence 467888877543 3455666677777 443 2332 2 23444555667777 6654 4677788
Q ss_pred HHHHHHHH
Q 013271 192 DMCGYAAA 199 (446)
Q Consensus 192 D~aK~iAa 199 (446)
++++.+-.
T Consensus 67 ~~~~~l~~ 74 (132)
T 3lte_A 67 DVIRSLRQ 74 (132)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88887743
No 111
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=36.21 E-value=1e+02 Score=22.84 Aligned_cols=77 Identities=9% Similarity=-0.038 Sum_probs=42.8
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 192 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~D 192 (446)
++++||.|... ..+.+.+.|...| +.+ ..+. +. .++.+.+.+..+| +||- +.+....+
T Consensus 2 ~~iliv~~~~~---~~~~l~~~l~~~g--~~v--~~~~------~~---~~~~~~l~~~~~d---lii~d~~~~~~~~~~ 62 (119)
T 2j48_A 2 GHILLLEEEDE---AATVVCEMLTAAG--FKV--IWLV------DG---STALDQLDLLQPI---VILMAWPPPDQSCLL 62 (119)
T ss_dssp CEEEEECCCHH---HHHHHHHHHHHTT--CEE--EEES------CH---HHHHHHHHHHCCS---EEEEECSTTCCTHHH
T ss_pred CEEEEEeCCHH---HHHHHHHHHHhCC--cEE--EEec------CH---HHHHHHHHhcCCC---EEEEecCCCCCCHHH
Confidence 56777766533 3556666777777 443 2222 22 3334444556666 5552 23556677
Q ss_pred HHHHHHHhh-cCCCeEEEEc
Q 013271 193 MCGYAAASY-LRGVSFIQIP 211 (446)
Q Consensus 193 ~aK~iAa~~-~~g~p~i~IP 211 (446)
+.+.+.... ...+|+|.+-
T Consensus 63 ~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 63 LLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp HHHHHHHTCCCSSCCCEEEE
T ss_pred HHHHHHhccccCCCCEEEEe
Confidence 777764332 1567777663
No 112
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=36.17 E-value=1.4e+02 Score=24.24 Aligned_cols=78 Identities=13% Similarity=0.156 Sum_probs=47.2
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
..+++||.|... ..+.+.+.|.+.| +.+ ..+. + ..++++.+.+..+| +||- +.+..-.
T Consensus 7 ~~~ILivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~al~~l~~~~~d---lii~D~~l~~~~g~ 67 (154)
T 3gt7_A 7 AGEILIVEDSPT---QAEHLKHILEETG--YQT--EHVR------N---GREAVRFLSLTRPD---LIISDVLMPEMDGY 67 (154)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHTTT--CEE--EEES------S---HHHHHHHHTTCCCS---EEEEESCCSSSCHH
T ss_pred CCcEEEEeCCHH---HHHHHHHHHHHCC--CEE--EEeC------C---HHHHHHHHHhCCCC---EEEEeCCCCCCCHH
Confidence 457888877543 4566677788877 443 2332 2 34445555666676 5554 3677788
Q ss_pred HHHHHHHHhh-cCCCeEEEEc
Q 013271 192 DMCGYAAASY-LRGVSFIQIP 211 (446)
Q Consensus 192 D~aK~iAa~~-~~g~p~i~IP 211 (446)
++++.+-... ...+|+|.+-
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 68 ALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp HHHHHHHHSTTTTTSCEEEEE
T ss_pred HHHHHHHhCCCcCCCCEEEEE
Confidence 8888774322 2567777763
No 113
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=35.47 E-value=1e+02 Score=26.73 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=48.7
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhcCCCCe-eEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc----
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPNV-SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG---- 186 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~~gi~~-~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG---- 186 (446)
+.|+.||..+.-.. ...+-..+.|.+.|++. ++..+.+|+. +|.=-.+-..++..++| .||++|
T Consensus 11 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGa-----fEiP~aa~~la~~~~yD---avIaLG~VIr 82 (157)
T 2obx_A 11 TVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGA-----YEIPLHARTLAETGRYG---AVLGTAFVVN 82 (157)
T ss_dssp CEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSG-----GGHHHHHHHHHHHTCCS---EEEEEEECCC
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH-----HHHHHHHHHHHhcCCCC---EEEEeecccc
Confidence 45788887664333 35666667787777532 3455666753 33222222233456677 999998
Q ss_pred CccHHH------HHHHHH-HhhcCCCeEEEEc
Q 013271 187 GGVIGD------MCGYAA-ASYLRGVSFIQIP 211 (446)
Q Consensus 187 GGsv~D------~aK~iA-a~~~~g~p~i~IP 211 (446)
|++.-+ +++.+. .....++|++.-=
T Consensus 83 G~T~Hfd~Va~~vs~Gl~~v~L~~~vPV~~GV 114 (157)
T 2obx_A 83 GGIYRHEFVASAVIDGMMNVQLSTGVPVLSAV 114 (157)
T ss_dssp CSSBCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 555322 222222 1234677776653
No 114
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=35.25 E-value=71 Score=25.79 Aligned_cols=79 Identities=10% Similarity=0.012 Sum_probs=46.2
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccH
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVI 190 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv 190 (446)
...+++||-|... ..+.+.+.|.+.+. ......+. + ..++.+.+.+..+| +||- ++++..
T Consensus 14 ~~~~iLivdd~~~---~~~~l~~~L~~~~~--~~~v~~~~------~---~~~a~~~l~~~~~d---lii~d~~l~~~~g 76 (152)
T 3eul_A 14 EKVRVVVGDDHPL---FREGVVRALSLSGS--VNVVGEAD------D---GAAALELIKAHLPD---VALLDYRMPGMDG 76 (152)
T ss_dssp CCEEEEEECSSHH---HHHHHHHHHHHHSS--EEEEEEES------S---HHHHHHHHHHHCCS---EEEEETTCSSSCH
T ss_pred ceEEEEEEcCCHH---HHHHHHHHHhhCCC--eEEEEEeC------C---HHHHHHHHHhcCCC---EEEEeCCCCCCCH
Confidence 3567888776543 34555566666551 11111222 2 33445555667777 6665 578888
Q ss_pred HHHHHHHHHhhcCCCeEEEE
Q 013271 191 GDMCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 191 ~D~aK~iAa~~~~g~p~i~I 210 (446)
.++.+.+... ...+|+|.+
T Consensus 77 ~~~~~~l~~~-~~~~~ii~~ 95 (152)
T 3eul_A 77 AQVAAAVRSY-ELPTRVLLI 95 (152)
T ss_dssp HHHHHHHHHT-TCSCEEEEE
T ss_pred HHHHHHHHhc-CCCCeEEEE
Confidence 8998887543 356777766
No 115
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=34.63 E-value=40 Score=26.27 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHhHhhcCCceEEEeec-CCCCceeEcCCCCHHHHHHHHHHH
Q 013271 373 VKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLK-GPLGNCVFTGDYDRKALDDTLYAF 443 (446)
Q Consensus 373 ~~~i~~ll~~lGlP~~~~~~-i~~e~~~~~l~~dkk~~~g~~~~vll~-~~iG~~~~~~~~~~~~l~~~l~~~ 443 (446)
..+.+++|++.|+|...-+. -+++...+ +. +..+|+-.+|.+- + -|+. ....+.++|++.|.+.
T Consensus 17 C~~aK~~L~~~gi~y~~idi~~d~~~~~~-~~---~~~~G~~tVP~I~i~-Dg~~--l~~~~~~el~~~L~el 82 (92)
T 2lqo_A 17 CLRLKTALTANRIAYDEVDIEHNRAAAEF-VG---SVNGGNRTVPTVKFA-DGST--LTNPSADEVKAKLVKI 82 (92)
T ss_dssp HHHHHHHHHHTTCCCEEEETTTCHHHHHH-HH---HHSSSSSCSCEEEET-TSCE--EESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEcCCCHHHHHH-HH---HHcCCCCEeCEEEEe-CCEE--EeCCCHHHHHHHHHHh
Confidence 57888999999999764432 23333322 22 2222332333222 1 2443 2367889998888764
No 116
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=34.60 E-value=2.9e+02 Score=25.78 Aligned_cols=86 Identities=12% Similarity=0.154 Sum_probs=49.1
Q ss_pred CCEEEEEEC-CCc-----hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCc
Q 013271 115 GKKVLVVTN-NTV-----APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGG 188 (446)
Q Consensus 115 ~k~vliVtd-~~v-----~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGG 188 (446)
..++-+|++ ..+ .....+-+.+.+++.| +++. ++...+. +..++.++.+.+.++| .||.+|.+
T Consensus 4 ~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g--~~~~--~~~~~~~----~~~~~~l~~l~~~~~d---gIi~~~~~ 72 (318)
T 2fqx_A 4 DFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENN--AKCK--YVTASTD----AEYVPSLSAFADENMG---LVVACGSF 72 (318)
T ss_dssp CCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTT--CEEE--EEECCSG----GGHHHHHHHHHHTTCS---EEEEESTT
T ss_pred CcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhC--CeEE--EEeCCCH----HHHHHHHHHHHHcCCC---EEEECChh
Confidence 345666665 122 2224566677777888 4433 2322211 1234567777888898 99999866
Q ss_pred cHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 189 VIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 189 sv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
.. |....++.. ..++|++.|-..
T Consensus 73 ~~-~~~~~~a~~-~p~~p~v~id~~ 95 (318)
T 2fqx_A 73 LV-EAVIETSAR-FPKQKFLVIDAV 95 (318)
T ss_dssp TH-HHHHHHHHH-CTTSCEEEESSC
T ss_pred HH-HHHHHHHHH-CCCCEEEEEcCc
Confidence 43 333333322 347999998543
No 117
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=34.53 E-value=1.1e+02 Score=29.41 Aligned_cols=84 Identities=10% Similarity=-0.083 Sum_probs=51.4
Q ss_pred CCCEEEEEEC-CCchhH-HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHH--HHHcCCCCcceEEEEcCc
Q 013271 114 QGKKVLVVTN-NTVAPL-YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDK--AIESRLDRRCTFVALGGG 188 (446)
Q Consensus 114 ~~k~vliVtd-~~v~~~-~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~--~~~~~~dr~~~IIAiGGG 188 (446)
+.+|+.+|++ ...+.. ..+.+.+.+++.|+ ++.. ..++.+. ......+.. +++.++| +|+..+.+
T Consensus 140 g~~~iaii~~~~~~~g~~~~~~~~~~l~~~G~--~v~~~~~~~~~~-----~d~~~~~~~~~l~~~~~d---av~~~~~~ 209 (391)
T 3eaf_A 140 GQGKLALAYDSKVAYSRSPIGAIKKAAPSLGL--QVVGDYDLPLRA-----TEADAERIAREMLAADPD---YVWCGNTI 209 (391)
T ss_dssp CSEEEEEEECTTCHHHHTTHHHHHHHTGGGTE--EEEEEEECCTTC-----CHHHHHHHHHHHHTTCCS---EEEECSCH
T ss_pred CCCEEEEEEecCChhHHHHHHHHHHHHHHcCC--ceeeeeccCCCC-----cCHHHHHHHHHHHHcCCC---EEEEecCc
Confidence 5789999998 555544 67888889999884 4322 2333221 234555666 7777888 88876654
Q ss_pred cHHHHHHHHHHhhcCC--CeEEE
Q 013271 189 VIGDMCGYAAASYLRG--VSFIQ 209 (446)
Q Consensus 189 sv~D~aK~iAa~~~~g--~p~i~ 209 (446)
.+++.++......| .|++.
T Consensus 210 --~~~~~~~~~~~~~g~~~~~~~ 230 (391)
T 3eaf_A 210 --SSCSLLGRAMAKVGLDAFLLT 230 (391)
T ss_dssp --HHHHHHHHHHHHHTCCCEEEE
T ss_pred --HHHHHHHHHHHHCCCCceEEE
Confidence 35666654443333 45543
No 118
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=34.27 E-value=1.6e+02 Score=22.84 Aligned_cols=76 Identities=20% Similarity=0.093 Sum_probs=44.7
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---E-cCccH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---L-GGGVI 190 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---i-GGGsv 190 (446)
..+++||.|... ..+.+...|.+.| +.+.. .+. + ..++++.+.+..+| +||- + |+...
T Consensus 9 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v~~-~~~------~---~~~a~~~~~~~~~d---lii~d~~~~~~~~g 70 (140)
T 3cg0_A 9 LPGVLIVEDGRL---AAATLRIQLESLG--YDVLG-VFD------N---GEEAVRCAPDLRPD---IALVDIMLCGALDG 70 (140)
T ss_dssp CCEEEEECCBHH---HHHHHHHHHHHHT--CEEEE-EES------S---HHHHHHHHHHHCCS---EEEEESSCCSSSCH
T ss_pred CceEEEEECCHH---HHHHHHHHHHHCC--CeeEE-EEC------C---HHHHHHHHHhCCCC---EEEEecCCCCCCCH
Confidence 457888876643 3455556666666 44321 232 2 23344445556677 5553 2 46778
Q ss_pred HHHHHHHHHhhcCCCeEEEE
Q 013271 191 GDMCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 191 ~D~aK~iAa~~~~g~p~i~I 210 (446)
.++++.+... ..+|+|.+
T Consensus 71 ~~~~~~l~~~--~~~~ii~l 88 (140)
T 3cg0_A 71 VETAARLAAG--CNLPIIFI 88 (140)
T ss_dssp HHHHHHHHHH--SCCCEEEE
T ss_pred HHHHHHHHhC--CCCCEEEE
Confidence 8888887544 67888877
No 119
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=34.14 E-value=2.5e+02 Score=25.02 Aligned_cols=84 Identities=8% Similarity=0.000 Sum_probs=50.4
Q ss_pred CEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 116 KKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 116 k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
+++.++..... +..+.+.+.+.+.+.| +.+.+ +.. +.+.+.-.+.++.+...++| .||-.+ .. -+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~--~~~---~~~~~~~~~~~~~l~~~~~d---giIi~~-~~-~~ 76 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHG--YQVLI--GNS---DNDIKKAQGYLATFVSHNCT---GMISTA-FN-EN 76 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTT--CCEEE--EEC---TTCHHHHHHHHHHHHHTTCS---EEEECG-GG-HH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEE--EeC---CCCHHHHHHHHHHHHhCCCC---EEEEec-CC-hH
Confidence 44555554322 2236777888888888 44432 222 22456667788888888999 888877 22 22
Q ss_pred HHHHHH-HhhcCCCeEEEEcCCc
Q 013271 193 MCGYAA-ASYLRGVSFIQIPTTV 214 (446)
Q Consensus 193 ~aK~iA-a~~~~g~p~i~IPTTl 214 (446)
. +. .....++|+|.+-...
T Consensus 77 ~---~~~~l~~~~iPvV~~~~~~ 96 (277)
T 3e61_A 77 I---IENTLTDHHIPFVFIDRIN 96 (277)
T ss_dssp H---HHHHHHHC-CCEEEGGGCC
T ss_pred H---HHHHHHcCCCCEEEEeccC
Confidence 2 22 2345699999987663
No 120
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=33.95 E-value=1.6e+02 Score=25.43 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=49.9
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhcCCCC-eeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc----
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPN-VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG---- 186 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~~gi~-~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG---- 186 (446)
+.|+.||..+.-.. ...+-..+.|.+.|++ -++..+.+|+. +|.=-.+-..++..++| .||++|
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa-----fEiP~aa~~la~~~~yD---avIaLG~VIr 83 (154)
T 1rvv_A 12 GLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGA-----FEIPFAAKKMAETKKYD---AIITLGTVIR 83 (154)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSG-----GGHHHHHHHHHHTSCCS---EEEEEEEEEC
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH-----HHHHHHHHHHHhcCCCC---EEEEeeeeec
Confidence 45677877664333 3566677788888853 13455666753 33222222223445677 999998
Q ss_pred CccHHH------HHHHHH-HhhcCCCeEEEEc
Q 013271 187 GGVIGD------MCGYAA-ASYLRGVSFIQIP 211 (446)
Q Consensus 187 GGsv~D------~aK~iA-a~~~~g~p~i~IP 211 (446)
|++.-+ +++.+. .....++|++.-=
T Consensus 84 G~T~Hfd~V~~~vs~Gl~~v~l~~~vPV~~GV 115 (154)
T 1rvv_A 84 GATTHYDYVCNEAAKGIAQAANTTGVPVIFGI 115 (154)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhCCCEEEEe
Confidence 666443 222221 1234678877653
No 121
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=33.93 E-value=1.3e+02 Score=23.92 Aligned_cols=78 Identities=12% Similarity=0.142 Sum_probs=43.9
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
..+++||.|.... .+.+...|...| +.+ ..+. +. .++++.+.+..+| +||. +.+....
T Consensus 8 ~~~iLivd~~~~~---~~~l~~~L~~~g--~~v--~~~~------~~---~~a~~~l~~~~~d---lii~d~~l~~~~g~ 68 (147)
T 2zay_A 8 WWRIMLVDTQLPA---LAASISALSQEG--FDI--IQCG------NA---IEAVPVAVKTHPH---LIITEANMPKISGM 68 (147)
T ss_dssp CEEEEEECTTGGG---GHHHHHHHHHHT--EEE--EEES------SH---HHHHHHHHHHCCS---EEEEESCCSSSCHH
T ss_pred CceEEEEeCCHHH---HHHHHHHHHHcC--CeE--EEeC------CH---HHHHHHHHcCCCC---EEEEcCCCCCCCHH
Confidence 4578887766443 344455555556 443 2332 32 3334444556677 6553 4566778
Q ss_pred HHHHHHHHh-hcCCCeEEEEc
Q 013271 192 DMCGYAAAS-YLRGVSFIQIP 211 (446)
Q Consensus 192 D~aK~iAa~-~~~g~p~i~IP 211 (446)
++++.+... ....+|+|.+-
T Consensus 69 ~~~~~l~~~~~~~~~pii~ls 89 (147)
T 2zay_A 69 DLFNSLKKNPQTASIPVIALS 89 (147)
T ss_dssp HHHHHHHTSTTTTTSCEEEEE
T ss_pred HHHHHHHcCcccCCCCEEEEe
Confidence 888877431 23567887773
No 122
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=33.77 E-value=2.8e+02 Score=25.89 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=49.6
Q ss_pred CCCEEEEEEC-CCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 114 QGKKVLVVTN-NTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 114 ~~k~vliVtd-~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
+.+|+.+|++ ..-+.. ..+.+.+.+++.|+ ++....++.+.. ++ ...++.+++.++| +|+..+.+ .
T Consensus 148 g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~--~v~~~~~~~~~~--d~---~~~~~~l~~~~~d---~v~~~~~~--~ 215 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSVGLSNFFINKFTELGG--QVKRVFFRSGDQ--DF---SAQLSVAMSFNPD---AIYITGYY--P 215 (366)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHTTC--EEEEEEECTTCC--CC---HHHHHHHHHTCCS---EEEECSCH--H
T ss_pred CCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCC--EEEEEEeCCCCc--cH---HHHHHHHHhcCCC---EEEEccch--h
Confidence 4689999964 333333 66788889999985 332222544332 32 3345666677887 88875544 5
Q ss_pred HHHHHHHHhhcCC--CeEE
Q 013271 192 DMCGYAAASYLRG--VSFI 208 (446)
Q Consensus 192 D~aK~iAa~~~~g--~p~i 208 (446)
|+..++......| +|++
T Consensus 216 ~a~~~~~~~~~~g~~~~~~ 234 (366)
T 3td9_A 216 EIALISRQARQLGFTGYIL 234 (366)
T ss_dssp HHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHcCCCceEE
Confidence 6666665554444 4544
No 123
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=33.64 E-value=1.2e+02 Score=29.63 Aligned_cols=89 Identities=11% Similarity=0.003 Sum_probs=49.9
Q ss_pred CCEEEEEECCCchh-HH----HHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCcc
Q 013271 115 GKKVLVVTNNTVAP-LY----LDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 189 (446)
Q Consensus 115 ~k~vliVtd~~v~~-~~----~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGs 189 (446)
..++-+|+...+.+ .| .+-+.+..++.|.+ ++...+... ++.+..++.++.+.+.++| +||+.|.+-
T Consensus 26 ~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~--~~~~~~e~~---~~~~d~~~~l~~l~~~g~d---~Ii~~g~~~ 97 (356)
T 3s99_A 26 KLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDK--VETTFLENV---AEGADAERSIKRIARAGNK---LIFTTSFGY 97 (356)
T ss_dssp CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTT--EEEEEECSC---CTTHHHHHHHHHHHHTTCS---EEEECSGGG
T ss_pred CCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCc--eEEEEEecC---CCHHHHHHHHHHHHHCCCC---EEEECCHHH
Confidence 34676776544433 23 34444444444421 333334332 2224457788888889999 999987554
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 190 IGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
.|...-+|..| ..+||+.|-..
T Consensus 98 -~~~~~~vA~~~-Pdv~fv~id~~ 119 (356)
T 3s99_A 98 -MDPTVKVAKKF-PDVKFEHATGY 119 (356)
T ss_dssp -HHHHHHHHTTC-TTSEEEEESCC
T ss_pred -HHHHHHHHHHC-CCCEEEEEecc
Confidence 45444444333 57899988543
No 124
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=33.29 E-value=51 Score=26.42 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=26.3
Q ss_pred CEEEEEECCCchhH-HHHHHHHHHhcCCCCeeE
Q 013271 116 KKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSV 147 (446)
Q Consensus 116 k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v 147 (446)
+|++++++.++.-. ..+++.+.+++.|+++++
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i 36 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVII 36 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEE
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEE
Confidence 68999999988665 788999999999965443
No 125
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=33.10 E-value=1.3e+02 Score=23.31 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=42.5
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
.++++||.|... ..+.+.+.|.+.| +.+ ..+. + ..++++.+.+..+| +||. +.++.-.
T Consensus 7 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~a~~~l~~~~~d---lvi~d~~l~~~~g~ 67 (130)
T 3eod_A 7 GKQILIVEDEQV---FRSLLDSWFSSLG--ATT--VLAA------D---GVDALELLGGFTPD---LMICDIAMPRMNGL 67 (130)
T ss_dssp TCEEEEECSCHH---HHHHHHHHHHHTT--CEE--EEES------C---HHHHHHHHTTCCCS---EEEECCC-----CH
T ss_pred CCeEEEEeCCHH---HHHHHHHHHHhCC--ceE--EEeC------C---HHHHHHHHhcCCCC---EEEEecCCCCCCHH
Confidence 568888877643 3455666777777 443 2222 2 23445555666676 6654 3566667
Q ss_pred HHHHHHHHhhcCCCeEEEE
Q 013271 192 DMCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~I 210 (446)
++.+.+... ...+|+|.+
T Consensus 68 ~~~~~l~~~-~~~~~ii~~ 85 (130)
T 3eod_A 68 KLLEHIRNR-GDQTPVLVI 85 (130)
T ss_dssp HHHHHHHHT-TCCCCEEEE
T ss_pred HHHHHHHhc-CCCCCEEEE
Confidence 787776542 346777776
No 126
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=32.75 E-value=1.8e+02 Score=23.25 Aligned_cols=76 Identities=9% Similarity=0.137 Sum_probs=46.1
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
..+++||.|... ..+.+...|...| +.+ ..+. + ..++++.+.+..+| +||. +.+....
T Consensus 7 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~a~~~l~~~~~d---lvi~d~~l~~~~g~ 67 (154)
T 2rjn_A 7 NYTVMLVDDEQP---ILNSLKRLIKRLG--CNI--ITFT------S---PLDALEALKGTSVQ---LVISDMRMPEMGGE 67 (154)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHTTT--CEE--EEES------C---HHHHHHHHTTSCCS---EEEEESSCSSSCHH
T ss_pred CCeEEEEcCCHH---HHHHHHHHHHHcC--CeE--EEeC------C---HHHHHHHHhcCCCC---EEEEecCCCCCCHH
Confidence 457888877643 4566667777777 443 2332 2 23444555566666 6653 4566778
Q ss_pred HHHHHHHHhhcCCCeEEEE
Q 013271 192 DMCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~I 210 (446)
++++.+... ...+|+|.+
T Consensus 68 ~~~~~l~~~-~~~~~ii~l 85 (154)
T 2rjn_A 68 VFLEQVAKS-YPDIERVVI 85 (154)
T ss_dssp HHHHHHHHH-CTTSEEEEE
T ss_pred HHHHHHHHh-CCCCcEEEE
Confidence 888877543 356788776
No 127
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=32.62 E-value=1.8e+02 Score=25.18 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=46.8
Q ss_pred CEEEEEECCCchh---HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHH-----cCCCCcceEEEEc-
Q 013271 116 KKVLVVTNNTVAP---LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE-----SRLDRRCTFVALG- 186 (446)
Q Consensus 116 k~vliVtd~~v~~---~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~-----~~~dr~~~IIAiG- 186 (446)
-|+.||..+.-.. ...+-..+.|.+.|. ++..+.+|+- +|.=-.+-..++. .++| .||++|
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~--~i~v~~VPGa-----fEiP~aa~~la~~~~~~~~~yD---avIaLG~ 82 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGA--TYDVVTVPGA-----LEIPATISFALDGADNGGTEYD---GFVALGT 82 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTC--EEEEEEESSG-----GGHHHHHHHHHHHHHTTCCCCS---EEEEEEE
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCC--CeEEEECCcH-----HHHHHHHHHHHhhccccCCCCC---EEEEeee
Confidence 4788887664333 356667778888884 4555666753 2222222222233 4566 999998
Q ss_pred ---CccHHH------HHHHHH-HhhcCCCeEEEE
Q 013271 187 ---GGVIGD------MCGYAA-ASYLRGVSFIQI 210 (446)
Q Consensus 187 ---GGsv~D------~aK~iA-a~~~~g~p~i~I 210 (446)
|++.-+ +++.+. .....++|++.-
T Consensus 83 VIrG~T~Hfd~Va~~v~~gl~~vsl~~~vPV~~G 116 (157)
T 2i0f_A 83 VIRGETYHFDIVSNESCRALTDLSVEESIAIGNG 116 (157)
T ss_dssp EECCSSSTTHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eecCCchHHHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 565332 222222 123467777654
No 128
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=32.57 E-value=2e+02 Score=24.86 Aligned_cols=80 Identities=18% Similarity=0.106 Sum_probs=46.4
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHc-------------CCCCcce
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES-------------RLDRRCT 181 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~-------------~~dr~~~ 181 (446)
..++|||-|... ..+.+...|.+.|.. .| ..+. +.+. +++.+.+. .+| +
T Consensus 61 ~~~ILiVdDd~~---~~~~l~~~L~~~g~~-~v--~~a~------~~~e---al~~l~~~~~~~~~~~~~~~~~~d---l 122 (206)
T 3mm4_A 61 GKRVLVVDDNFI---SRKVATGKLKKMGVS-EV--EQCD------SGKE---ALRLVTEGLTQREEQGSVDKLPFD---Y 122 (206)
T ss_dssp TCEEEEECSCHH---HHHHHHHHHHHTTCS-EE--EEES------SHHH---HHHHHHHHHHHHHHHTCSSCCSCS---E
T ss_pred CCEEEEEeCCHH---HHHHHHHHHHHcCCC-ee--eeeC------CHHH---HHHHHHhhcccccccccccCCCCC---E
Confidence 567888877643 345566667777720 23 3333 2222 33333332 556 6
Q ss_pred EEE---EcCccHHHHHHHHHHh---hcCCCeEEEEcC
Q 013271 182 FVA---LGGGVIGDMCGYAAAS---YLRGVSFIQIPT 212 (446)
Q Consensus 182 IIA---iGGGsv~D~aK~iAa~---~~~g~p~i~IPT 212 (446)
||. +.+..-.|+++.+-.. +...+|+|.+-.
T Consensus 123 illD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 123 IFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp EEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred EEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEEC
Confidence 664 5678888998887543 246788888743
No 129
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=32.52 E-value=2e+02 Score=23.26 Aligned_cols=77 Identities=12% Similarity=0.021 Sum_probs=45.9
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHc--CCCCcceEEE---EcCccH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES--RLDRRCTFVA---LGGGVI 190 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~--~~dr~~~IIA---iGGGsv 190 (446)
.+++||.|... ..+.+...|.+.| +.+. ..+. + ..++++.+.+. .+| +||- +.+..-
T Consensus 37 ~~Ilivdd~~~---~~~~l~~~L~~~g--~~v~-~~~~------~---~~~al~~l~~~~~~~d---liilD~~l~~~~g 98 (157)
T 3hzh_A 37 FNVLIVDDSVF---TVKQLTQIFTSEG--FNII-DTAA------D---GEEAVIKYKNHYPNID---IVTLXITMPKMDG 98 (157)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEEE-EEES------S---HHHHHHHHHHHGGGCC---EEEECSSCSSSCH
T ss_pred eEEEEEeCCHH---HHHHHHHHHHhCC--CeEE-EEEC------C---HHHHHHHHHhcCCCCC---EEEEeccCCCccH
Confidence 46777766543 4556666777777 4431 1332 2 23444444555 566 6654 567888
Q ss_pred HHHHHHHHHhhcCCCeEEEEc
Q 013271 191 GDMCGYAAASYLRGVSFIQIP 211 (446)
Q Consensus 191 ~D~aK~iAa~~~~g~p~i~IP 211 (446)
.++++.+... ...+|+|.+-
T Consensus 99 ~~~~~~lr~~-~~~~~ii~ls 118 (157)
T 3hzh_A 99 ITCLSNIMEF-DKNARVIMIS 118 (157)
T ss_dssp HHHHHHHHHH-CTTCCEEEEE
T ss_pred HHHHHHHHhh-CCCCcEEEEe
Confidence 8988887543 3567877763
No 130
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=32.50 E-value=1.3e+02 Score=29.04 Aligned_cols=85 Identities=8% Similarity=0.020 Sum_probs=47.9
Q ss_pred hHhhhcCCCCEEEEE------ECCCchhHHHHHHHHHHhc-CCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCc
Q 013271 107 DLLQKHVQGKKVLVV------TNNTVAPLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRR 179 (446)
Q Consensus 107 ~~l~~~~~~k~vliV------td~~v~~~~~~~v~~~L~~-~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~ 179 (446)
++++.+ +.+++.+| ++..-+....+.+.+.+.+ .|+ .+....+.. ++.......++.+++ +++
T Consensus 139 ~~l~~~-~w~~v~ii~~~d~~~~~~~~g~~~~~~~~~~~~~~g~--~v~~~~~~~----~~~~d~~~~l~~i~~-~~~-- 208 (435)
T 1dp4_A 139 ALHRRL-GWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNI--TVNHQEFVE----GDPDHYPKLLRAVRR-KGR-- 208 (435)
T ss_dssp HHHHHH-TCCSEEEEEEECCSSSCCHHHHHHHHHHHHHHHHHCC--EEEEEEECT----TCGGGHHHHHHHHHH-HCS--
T ss_pred HHHHHC-CCcEEEEEEEccCCCCcchHHHHHHHHHHHHHhhcCe--EEEEEEEec----CchhhHHHHHHHHHh-hCc--
Confidence 455554 46888888 5443332334566777777 785 443333321 122345667777776 777
Q ss_pred ceEEEEcCccHHHHHHHHHHhhcCC
Q 013271 180 CTFVALGGGVIGDMCGYAAASYLRG 204 (446)
Q Consensus 180 ~~IIAiGGGsv~D~aK~iAa~~~~g 204 (446)
+||..|.+. |...++......|
T Consensus 209 -viv~~~~~~--~~~~~~~~a~~~g 230 (435)
T 1dp4_A 209 -VIYICSSPD--AFRNLMLLALNAG 230 (435)
T ss_dssp -EEEEESCHH--HHHHHHHHHHHTT
T ss_pred -eEEEecChH--HHHHHHHHHHHcC
Confidence 888877653 5555554444333
No 131
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=32.31 E-value=1.6e+02 Score=25.34 Aligned_cols=53 Identities=19% Similarity=0.334 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHH-HcCCCCcceEEEEcCccHHH
Q 013271 130 YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAI-ESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 130 ~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~-~~~~dr~~~IIAiGGGsv~D 192 (446)
-+..+.+.|.+.|+ +|. ..++++ +.+.+.+.++.+. ..++| +||--||=++.+
T Consensus 41 ng~~L~~~L~~~G~--~v~~~~iV~D-----d~~~i~~al~~~~a~~~~D---lVittGG~g~~~ 95 (178)
T 3iwt_A 41 SGDIIKQLLIENGH--KIIGYSLVPD-----DKIKILKAFTDALSIDEVD---VIISTGGTGYSP 95 (178)
T ss_dssp HHHHHHHHHHHTTC--EEEEEEEECS-----CHHHHHHHHHHHHTCTTCC---EEEEESCCSSST
T ss_pred hHHHHHHHHHHCCC--EEEEEEEeCC-----CHHHHHHHHHHHHhcCCCC---EEEecCCcccCC
Confidence 45678888999994 543 334443 3456665555433 34566 999999987764
No 132
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=32.03 E-value=50 Score=32.60 Aligned_cols=54 Identities=9% Similarity=-0.022 Sum_probs=26.5
Q ss_pred chhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 013271 329 GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT 387 (446)
Q Consensus 329 gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~ 387 (446)
||+++|+|++.+ .-.|+..-+.+..+.+-..-++. .+...+++.++.+.+|++.
T Consensus 262 g~~~~Hai~h~l---~~~~~i~HG~avai~lp~v~~~~--~~~~~~~~~~la~~lg~~~ 315 (387)
T 3bfj_A 262 NLGYVHAMAHQL---GGLYDMPHGVANAVLLPHVARYN--LIANPEKFADIAELMGENI 315 (387)
T ss_dssp CCCHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHHHH--GGGCHHHHHHHHHHTTCCC
T ss_pred CcHHHHHhhhHH---hcCcCCChHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHhCCCC
Confidence 577788887652 21233222333222222222211 1233466777888888764
No 133
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=32.01 E-value=1.7e+02 Score=22.82 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=45.6
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
..+++||.|... ..+.+...|...| +++ ..+. + .+++++.+.+..+| +||- +.+..-.
T Consensus 7 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~a~~~l~~~~~d---lii~d~~l~~~~g~ 67 (142)
T 3cg4_A 7 KGDVMIVDDDAH---VRIAVKTILSDAG--FHI--ISAD------S---GGQCIDLLKKGFSG---VVLLDIMMPGMDGW 67 (142)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHTT--CEE--EEES------S---HHHHHHHHHTCCCE---EEEEESCCSSSCHH
T ss_pred CCeEEEEcCCHH---HHHHHHHHHHHCC--eEE--EEeC------C---HHHHHHHHHhcCCC---EEEEeCCCCCCCHH
Confidence 467888766543 4566666777777 443 2222 2 33444555666666 5553 3566778
Q ss_pred HHHHHHHHh-hcCCCeEEEE
Q 013271 192 DMCGYAAAS-YLRGVSFIQI 210 (446)
Q Consensus 192 D~aK~iAa~-~~~g~p~i~I 210 (446)
++++.+... ....+|+|.+
T Consensus 68 ~~~~~l~~~~~~~~~pii~~ 87 (142)
T 3cg4_A 68 DTIRAILDNSLEQGIAIVML 87 (142)
T ss_dssp HHHHHHHHTTCCTTEEEEEE
T ss_pred HHHHHHHhhcccCCCCEEEE
Confidence 888877542 2356787776
No 134
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=31.91 E-value=62 Score=30.67 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=50.4
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
+++.+. +.+|+.+|.+...+.. ..+.+++.+++.|+ ++. ...++.+.. + ....++.+++.++| +|+.
T Consensus 152 ~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~--~v~~~~~~~~~~~--d---~~~~~~~~~~~~~d---av~~ 220 (386)
T 3sg0_A 152 KYIAKT-GAKKVGYIGFSDAYGEGYYKVLAAAAPKLGF--ELTTHEVYARSDA--S---VTGQVLKIIATKPD---AVFI 220 (386)
T ss_dssp HHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHHTC--EECCCEEECTTCS--C---CHHHHHHHHHTCCS---EEEE
T ss_pred HHHHhc-CCCEEEEEecCchHHHHHHHHHHHHHHHcCC--EEEEEEeeCCCCC--c---HHHHHHHHHhcCCC---EEEE
Confidence 344444 5789998876655444 67788888988885 331 123343322 2 33445566677787 8888
Q ss_pred EcCccHHHHHHHHHHhhcCCC
Q 013271 185 LGGGVIGDMCGYAAASYLRGV 205 (446)
Q Consensus 185 iGGGsv~D~aK~iAa~~~~g~ 205 (446)
.+.+. +..+++......|+
T Consensus 221 ~~~~~--~a~~~~~~~~~~g~ 239 (386)
T 3sg0_A 221 ASAGT--PAVLPQKALRERGF 239 (386)
T ss_dssp ECCSG--GGHHHHHHHHHTTC
T ss_pred ecCcc--hHHHHHHHHHHcCC
Confidence 77643 44555544444444
No 135
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=31.83 E-value=99 Score=28.96 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=51.0
Q ss_pred CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 114 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
+.+|+.+|++...+.. ..+.+++.+++.|+.+. ....++.++. + ....++.+++.++| +|+..+.+ .+
T Consensus 137 g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~-~~~~~~~~~~--d---~~~~~~~l~~~~~d---~v~~~~~~--~~ 205 (356)
T 3ipc_A 137 KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEV-MYEGVNVGDK--D---FSALISKMKEAGVS---IIYWGGLH--TE 205 (356)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCS-EEEECCTTCC--C---CHHHHHHHHHTTCC---EEEEESCH--HH
T ss_pred CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEE-EEEeeCCCCC--C---HHHHHHHHHhcCCC---EEEEccCc--hH
Confidence 4789999988665544 67788889999886432 2233443332 3 33445566677777 77765543 45
Q ss_pred HHHHHHHhhcCC--CeEEE
Q 013271 193 MCGYAAASYLRG--VSFIQ 209 (446)
Q Consensus 193 ~aK~iAa~~~~g--~p~i~ 209 (446)
+++++......| +|++.
T Consensus 206 a~~~~~~~~~~g~~~~~~~ 224 (356)
T 3ipc_A 206 AGLIIRQAADQGLKAKLVS 224 (356)
T ss_dssp HHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHHHHCCCCCcEEE
Confidence 666665544434 45543
No 136
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=31.62 E-value=2.9e+02 Score=24.83 Aligned_cols=85 Identities=6% Similarity=0.012 Sum_probs=51.1
Q ss_pred CCEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 115 GKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
.+++-++..... +..+.+-+.+.+++.| +.+.+ +.. +.+.+.-.+.++.+...++| .||..+....-
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~--~~~---~~~~~~~~~~~~~l~~~~vd---giI~~~~~~~~ 77 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNG--YRILL--CNT---ESDLARSRSCLTLLSGKMVD---GVITMDALSEL 77 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTT--CEEEE--EEC---TTCHHHHHHHTHHHHTTCCS---EEEECCCGGGH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcC--CEEEE--EeC---CCCHHHHHHHHHHHHhCCCC---EEEEeCCCCCh
Confidence 455666654322 2225677777888888 44432 222 12445556667777888888 88887764432
Q ss_pred HHHHHHHHhhcCCCeEEEEcCC
Q 013271 192 DMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+..+.+ . .++|+|.+-..
T Consensus 78 ~~~~~l---~-~~iPvV~~~~~ 95 (285)
T 3c3k_A 78 PELQNI---I-GAFPWVQCAEY 95 (285)
T ss_dssp HHHHHH---H-TTSSEEEESSC
T ss_pred HHHHHH---h-cCCCEEEEccc
Confidence 333322 3 78999999655
No 137
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=31.61 E-value=1.4e+02 Score=28.49 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=61.5
Q ss_pred ceeEEEccCcCCC--hhHhhhc---CCC--CEEEEEECCCc-hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHH
Q 013271 93 SYPIYIGSGLLDH--PDLLQKH---VQG--KKVLVVTNNTV-APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTL 164 (446)
Q Consensus 93 ~~~I~~G~g~~~~--~~~l~~~---~~~--k~vliVtd~~v-~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v 164 (446)
..-+++|-|..+. .++++.+ .++ .++++|.-... .+.+.+...+.|.+.|++ .+....+..-+. .+.+.+
T Consensus 27 g~l~iiGGgedk~~~~~i~~~~v~lagg~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~-~v~~L~i~~r~~-a~~~~~ 104 (291)
T 3en0_A 27 PAILIIGGAEDKVHGREILQTFWSRSGGNDAIIGIIPSASREPLLIGERYQTIFSDMGVK-ELKVLDIRDRAQ-GDDSGY 104 (291)
T ss_dssp CCEEEECSSCCSSSCCHHHHHHHHHTTGGGCEEEEECTTCSSHHHHHHHHHHHHHHHCCS-EEEECCCCSGGG-GGCHHH
T ss_pred ceEEEEECCCCccChHHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCC-eeEEEEecCccc-cCCHHH
Confidence 3556788776542 2333221 122 58888865443 344888888899888841 344333322221 122232
Q ss_pred HHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHH---------HhhcCC-CeEEEEcCCcC
Q 013271 165 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAA---------ASYLRG-VSFIQIPTTVM 215 (446)
Q Consensus 165 ~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iA---------a~~~~g-~p~i~IPTTl~ 215 (446)
. +.+. .+| .|=||||...-+.+... ..+.+| .|++ -|+.+
T Consensus 105 ~---~~l~--~ad----~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~--GtSAG 154 (291)
T 3en0_A 105 R---LFVE--QCT----GIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLA--GTSAG 154 (291)
T ss_dssp H---HHHH--HCS----EEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEE--EETHH
T ss_pred H---HHHh--cCC----EEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEE--EeCHH
Confidence 2 2333 356 78899999888776652 235678 8875 44533
No 138
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=31.56 E-value=1.5e+02 Score=23.23 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=43.1
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE--EcCccHHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA--LGGGVIGD 192 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA--iGGGsv~D 192 (446)
..+++||.|... ..+.+...|.+.| +++. .+. + ..++++.+.+..+| +||. +.+....+
T Consensus 4 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~l~~~~~d---lvi~d~~~~~~g~~ 64 (142)
T 2qxy_A 4 TPTVMVVDESRI---TFLAVKNALEKDG--FNVI--WAK------N---EQEAFTFLRREKID---LVFVDVFEGEESLN 64 (142)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHGGGT--CEEE--EES------S---HHHHHHHHTTSCCS---EEEEECTTTHHHHH
T ss_pred CCeEEEEeCCHH---HHHHHHHHHHhCC--CEEE--EEC------C---HHHHHHHHhccCCC---EEEEeCCCCCcHHH
Confidence 457888866543 4566677777777 4432 322 2 33444555566666 5543 24445566
Q ss_pred HHHHHHHhhcCCCeEEEE
Q 013271 193 MCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 193 ~aK~iAa~~~~g~p~i~I 210 (446)
+.+.+... ...+|+|.+
T Consensus 65 ~~~~l~~~-~~~~pii~l 81 (142)
T 2qxy_A 65 LIRRIREE-FPDTKVAVL 81 (142)
T ss_dssp HHHHHHHH-CTTCEEEEE
T ss_pred HHHHHHHH-CCCCCEEEE
Confidence 66665432 346888776
No 139
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=31.13 E-value=1.2e+02 Score=26.39 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=48.5
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhcCCCCe-eEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc----
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPNV-SVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG---- 186 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~~gi~~-~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG---- 186 (446)
+.|+.||..+.-.. ...+-..+.|.+.|++. ++..+.+|+ .+|.=-.+-..++..++| .||++|
T Consensus 10 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPG-----afEiP~aa~~la~~~~yD---avIaLG~VIr 81 (158)
T 1di0_A 10 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPG-----AYEIPLHAKTLARTGRYA---AIVGAAFVID 81 (158)
T ss_dssp CEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESS-----GGGHHHHHHHHHHTSCCS---EEEEEEECCC
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCc-----HHHHHHHHHHHHhcCCCC---EEEEeecccc
Confidence 45788887664333 35666667787777532 345566675 333222222233445677 999998
Q ss_pred CccHHH------HHHHHHH-hhcCCCeEEEEc
Q 013271 187 GGVIGD------MCGYAAA-SYLRGVSFIQIP 211 (446)
Q Consensus 187 GGsv~D------~aK~iAa-~~~~g~p~i~IP 211 (446)
|++.-+ +++.+.- ....++|++.-=
T Consensus 82 G~T~Hfd~Va~~vs~Gl~~v~L~~~vPV~~GV 113 (158)
T 1di0_A 82 GGIYDHDFVATAVINGMMQVQLETEVPVLSVV 113 (158)
T ss_dssp CSSBCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 555332 2222221 234677776553
No 140
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=31.11 E-value=2.3e+02 Score=27.13 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=18.7
Q ss_pred ceEEEEcCccHHH-HHHHHHHhhcCCCeEEEEcCC
Q 013271 180 CTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 180 ~~IIAiGGGsv~D-~aK~iAa~~~~g~p~i~IPTT 213 (446)
.+|+++|||..+= +++++.. ....+++|.|...
T Consensus 202 ~vv~~vGtGGt~aGi~~~~k~-~~~~~~vigVe~~ 235 (342)
T 4d9b_A 202 SVVVASGSAGTHAGLAVGLEH-LMPDVELIGVTVS 235 (342)
T ss_dssp EEEEEESSSHHHHHHHHHHHH-HCTTSEEEEEESS
T ss_pred EEEEeCCCCHHHHHHHHHHHh-hCCCCeEEEEEec
Confidence 4788888876543 3333321 2345667766554
No 141
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=30.85 E-value=2.1e+02 Score=22.95 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=50.0
Q ss_pred CCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHH
Q 013271 115 GKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDM 193 (446)
Q Consensus 115 ~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~ 193 (446)
..|+++++..+..-. +.++++++.++.|++ ++..-.+.++. ++. ..++| ||=+|=-..--.
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~--v~i~a~~~~~~-------~~~-----~~~~D----vvLLgPQV~y~~ 67 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVR--VIANSGAYGAH-------YDI-----MGVYD----LIILAPQVRSYY 67 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCS--EEEEEEETTSC-------TTT-----GGGCS----EEEECGGGGGGH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCc--eEEEEcchHHH-------Hhh-----ccCCC----EEEEChHHHHHH
Confidence 457999998886554 889999999999954 44333332221 111 12467 555666665444
Q ss_pred HHHHHHhhcCCCeEEEEcCC
Q 013271 194 CGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 194 aK~iAa~~~~g~p~i~IPTT 213 (446)
.++-...-..++|+..||..
T Consensus 68 ~~ik~~~~~~~ipV~vI~~~ 87 (108)
T 3nbm_A 68 REMKVDAERLGIQIVATRGM 87 (108)
T ss_dssp HHHHHHHTTTTCEEEECCHH
T ss_pred HHHHHHhhhcCCcEEEeCHH
Confidence 44433333458999999865
No 142
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=30.76 E-value=1.9e+02 Score=25.37 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=52.7
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
|+.|=+|..-.+ +.+.|.+.|++.| ++|..+-....++..-.+...++.+.+.+..+|| .|+--|-|.=+-++
T Consensus 23 kIaIgsDhaG~~-lK~~i~~~L~~~G--~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~--GIliCGTGiG~sIa-- 95 (166)
T 3s5p_A 23 KVAFASDHGGRD-LRMFLQQRASAHG--YEVMDLGTESDASVDYPDFAKIGCEAVTSGRADC--CILVCGTGIGISIA-- 95 (166)
T ss_dssp EEEEEECGGGHH-HHHHHHHHHHHTT--CEEEEEEC--------CHHHHHHHHHHHTTSCSE--EEEEESSSHHHHHH--
T ss_pred EEEEEECchHHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcE--EEEEcCCcHHHHHH--
Confidence 688888876554 5788999999999 5664443222222111255667777777777886 66666777655544
Q ss_pred HHHhhcCCCeEEEEcCC
Q 013271 197 AAASYLRGVSFIQIPTT 213 (446)
Q Consensus 197 iAa~~~~g~p~i~IPTT 213 (446)
+--.+|+....+-.+
T Consensus 96 --ANKv~GIRAAlc~d~ 110 (166)
T 3s5p_A 96 --ANKMKGIRCALCSTE 110 (166)
T ss_dssp --HHTSTTCCEEECSSH
T ss_pred --hhcCCCeEEEEeCCH
Confidence 223467776655444
No 143
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=30.70 E-value=77 Score=33.99 Aligned_cols=84 Identities=13% Similarity=0.010 Sum_probs=52.1
Q ss_pred hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEE-eCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE
Q 013271 106 PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVI-LPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA 184 (446)
Q Consensus 106 ~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i-~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA 184 (446)
.++++.+ +.+++.+|+|........+.+.+.+++.|+ .+.... ++.+ ...+..+....+..+++.+++ +||-
T Consensus 113 ~~l~~~~-gw~~v~ii~d~~~g~~~~~~~~~~~~~~g~--~v~~~~~~~~~-~~~~~~d~~~~l~~i~~~~~~---vii~ 185 (823)
T 3kg2_A 113 LSLIEYY-QWDKFAYLYDSDRGLSTLQAVLDSAAEKKW--QVTAINVGNIN-NDKKDETYRSLFQDLELKKER---RVIL 185 (823)
T ss_dssp HHHHHHT-TCSEEEEEECGGGCTHHHHHHHHHHHHTTC--EEEEEECSSCC-SSSTTTTTTTHHHHTTTTTCC---EEEE
T ss_pred HHHHHHC-CCCEEEEEEeCChhHHHHHHHHHHhhccCC--ceEEEEeecCC-CCccchhHHHHHHHHHhcCCe---EEEE
Confidence 4566554 579999999765444478889999999985 443322 2222 111234455667777777877 8887
Q ss_pred EcCccHHHHHHHHH
Q 013271 185 LGGGVIGDMCGYAA 198 (446)
Q Consensus 185 iGGGsv~D~aK~iA 198 (446)
.|.+ -+...++.
T Consensus 186 ~~~~--~~~~~~~~ 197 (823)
T 3kg2_A 186 DCER--DKVNDIVD 197 (823)
T ss_dssp ECCH--HHHHHHHH
T ss_pred ECCH--HHHHHHHH
Confidence 7665 34444443
No 144
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=30.67 E-value=2e+02 Score=25.26 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=54.6
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
-|+.|-+|..-.+ +.+.|.+.|++.| ++|..+-....++..-.+...++.+.+.+..+|| .|+--|-|.=+-++
T Consensus 21 MkIaIgsDhaG~~-lK~~i~~~L~~~G--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~--GIliCGTGiG~sIa- 94 (169)
T 3ph3_A 21 MKIGIGSDHGGYN-LKREIADFLKKRG--YEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDR--GIVICGTGLGISIA- 94 (169)
T ss_dssp CEEEEEECGGGHH-HHHHHHHHHHHTT--CEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSE--EEEEESSSHHHHHH-
T ss_pred CEEEEEeCchHHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCE--EEEEcCCcHHHHHH-
Confidence 3678888876554 5788999999998 4554332222222222355667777777777776 67777777655444
Q ss_pred HHHHhhcCCCeEEEEcCC
Q 013271 196 YAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTT 213 (446)
+--.+|+....+-.+
T Consensus 95 ---ANKv~GIRAAlc~d~ 109 (169)
T 3ph3_A 95 ---ANKVPGIRAAVCTNS 109 (169)
T ss_dssp ---HTTSTTCCEEECSSH
T ss_pred ---hhcCCCeEEEEeCCH
Confidence 233467776665444
No 145
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=30.59 E-value=2.8e+02 Score=24.76 Aligned_cols=86 Identities=9% Similarity=0.073 Sum_probs=54.3
Q ss_pred CCEEEEEECC-----C---chhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc
Q 013271 115 GKKVLVVTNN-----T---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG 186 (446)
Q Consensus 115 ~k~vliVtd~-----~---v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG 186 (446)
.+++.++... . .+..+.+.+.+.+.+.| +.+ .++.. +.+.+...+.++.+...++| .||-++
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g--~~~--~~~~~---~~~~~~~~~~~~~~~~~~vd---giIi~~ 77 (292)
T 3k4h_A 8 TKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEG--YAL--YMSTG---ETEEEIFNGVVKMVQGRQIG---GIILLY 77 (292)
T ss_dssp CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTT--CEE--EECCC---CSHHHHHHHHHHHHHTTCCC---EEEESC
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcC--CEE--EEEeC---CCCHHHHHHHHHHHHcCCCC---EEEEeC
Confidence 4556666554 1 22236677788888888 443 33332 22445667788888888998 888877
Q ss_pred CccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 187 GGVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 187 GGsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
....-+..+.+ ...++|+|.+-..
T Consensus 78 ~~~~~~~~~~l---~~~~iPvV~~~~~ 101 (292)
T 3k4h_A 78 SRENDRIIQYL---HEQNFPFVLIGKP 101 (292)
T ss_dssp CBTTCHHHHHH---HHTTCCEEEESCC
T ss_pred CCCChHHHHHH---HHCCCCEEEECCC
Confidence 65443433332 3579999998665
No 146
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=30.54 E-value=1.6e+02 Score=22.16 Aligned_cols=78 Identities=23% Similarity=0.256 Sum_probs=44.9
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---Ec-CccHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LG-GGVIG 191 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iG-GGsv~ 191 (446)
.+++||.|... ..+.+.+.|.+.| +++ ..+. +. .++.+.+.+..+| +||- +. +....
T Consensus 6 ~~ilivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~~---~~a~~~~~~~~~d---lvi~d~~~~~~~~g~ 66 (127)
T 2gkg_A 6 KKILIVESDTA---LSATLRSALEGRG--FTV--DETT------DG---KGSVEQIRRDRPD---LVVLAVDLSAGQNGY 66 (127)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHHT--CEE--EEEC------CH---HHHHHHHHHHCCS---EEEEESBCGGGCBHH
T ss_pred CeEEEEeCCHH---HHHHHHHHHHhcC--ceE--EEec------CH---HHHHHHHHhcCCC---EEEEeCCCCCCCCHH
Confidence 47888766543 3455666666666 443 2332 22 3334444556676 5553 33 66777
Q ss_pred HHHHHHHHhh-cCCCeEEEEcCC
Q 013271 192 DMCGYAAASY-LRGVSFIQIPTT 213 (446)
Q Consensus 192 D~aK~iAa~~-~~g~p~i~IPTT 213 (446)
++++.+.... ...+|+|.+ ..
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~-~~ 88 (127)
T 2gkg_A 67 LICGKLKKDDDLKNVPIVII-GN 88 (127)
T ss_dssp HHHHHHHHSTTTTTSCEEEE-EC
T ss_pred HHHHHHhcCccccCCCEEEE-ec
Confidence 8888775432 357899888 44
No 147
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=30.53 E-value=90 Score=29.83 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=45.5
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEE
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVAL 185 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAi 185 (446)
.+++.. +.+|+.++++...+.. ..+.+++.+++.|.++ +....++.+.. +....+..+++.++| +|+.+
T Consensus 132 ~~~~~~-g~k~vaii~~~~~~g~~~~~~~~~~~~~~g~~v-v~~~~~~~~~~-----d~~~~l~~i~~~~pd---~v~~~ 201 (371)
T 4f06_A 132 KVAKQK-GATKVAIAVSDYGPGIDAETAFKKTFEAEGGKV-VEAVRMPLSTT-----DFGPIMQRIKNSGAD---MIFTF 201 (371)
T ss_dssp HHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEE-EEEEEECTTCC-----CCHHHHHHHHHHTCS---EEEEE
T ss_pred hhhhhc-CceEEEEEcCCcccchhHHHHHHHHHHhcCCce-EEEEecCcccc-----cHHHHHHHHHhcCCC---EEEEE
Confidence 344444 5789888887766655 7788889999988532 23344554433 244556677888998 77654
Q ss_pred c
Q 013271 186 G 186 (446)
Q Consensus 186 G 186 (446)
.
T Consensus 202 ~ 202 (371)
T 4f06_A 202 L 202 (371)
T ss_dssp C
T ss_pred e
Confidence 4
No 148
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=30.39 E-value=1.5e+02 Score=23.47 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=46.4
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
..+++||.|... ..+.+...|.+.| +...+..+. + ..++++.+.+..+| +||. +.++...
T Consensus 5 ~~~ILivdd~~~---~~~~l~~~L~~~~--~~~~v~~~~------~---~~~a~~~l~~~~~d---lii~D~~l~~~~g~ 67 (144)
T 3kht_A 5 SKRVLVVEDNPD---DIALIRRVLDRKD--IHCQLEFVD------N---GAKALYQVQQAKYD---LIILDIGLPIANGF 67 (144)
T ss_dssp CEEEEEECCCHH---HHHHHHHHHHHTT--CCEEEEEES------S---HHHHHHHHTTCCCS---EEEECTTCGGGCHH
T ss_pred CCEEEEEeCCHH---HHHHHHHHHHhcC--CCeeEEEEC------C---HHHHHHHhhcCCCC---EEEEeCCCCCCCHH
Confidence 356777766543 3556666777777 332223332 2 34445555666676 6664 4567777
Q ss_pred HHHHHHHHh-hcCCCeEEEEc
Q 013271 192 DMCGYAAAS-YLRGVSFIQIP 211 (446)
Q Consensus 192 D~aK~iAa~-~~~g~p~i~IP 211 (446)
++.+.+-.. ....+|+|.+-
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 68 EVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp HHHHHHHSSSTTTTCCEEEEE
T ss_pred HHHHHHHhcccccCCCEEEEe
Confidence 888776431 23567887774
No 149
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=30.39 E-value=3e+02 Score=25.01 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccH--HHHHHHHHHhhcCC
Q 013271 127 APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI--GDMCGYAAASYLRG 204 (446)
Q Consensus 127 ~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv--~D~aK~iAa~~~~g 204 (446)
+..+.+.+.+.+++.| +.+.+ +.. +.+.+.-.+.++.+...++| .||-.+.... -+..+. ....+
T Consensus 17 ~~~~~~gi~~~a~~~g--~~~~~--~~~---~~~~~~~~~~i~~l~~~~vd---giIi~~~~~~~~~~~~~~---~~~~~ 83 (313)
T 3m9w_A 17 WQKDRDIFVKKAESLG--AKVFV--QSA---NGNEETQMSQIENMINRGVD---VLVIIPYNGQVLSNVVKE---AKQEG 83 (313)
T ss_dssp THHHHHHHHHHHHHTS--CEEEE--EEC---TTCHHHHHHHHHHHHHTTCS---EEEEECSSTTSCHHHHHH---HHTTT
T ss_pred HHHHHHHHHHHHHHcC--CEEEE--ECC---CCCHHHHHHHHHHHHHcCCC---EEEEeCCChhhhHHHHHH---HHHCC
Confidence 4446788888899998 44432 222 22445566777888888998 8887775432 233332 34579
Q ss_pred CeEEEEcCCc
Q 013271 205 VSFIQIPTTV 214 (446)
Q Consensus 205 ~p~i~IPTTl 214 (446)
+|+|.+-+..
T Consensus 84 iPvV~~~~~~ 93 (313)
T 3m9w_A 84 IKVLAYDRMI 93 (313)
T ss_dssp CEEEEESSCC
T ss_pred CeEEEECCcC
Confidence 9999997663
No 150
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=29.83 E-value=1.4e+02 Score=28.10 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHH-HHHHHHHhhcCCCeEEEEcCCcC
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTTVM 215 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D-~aK~iAa~~~~g~p~i~IPTTl~ 215 (446)
.+...+.+.+..-. .=++..+|++|+||+.- ++++++...+.++.+..|||+..
T Consensus 24 ~~e~K~~iA~~A~~-~V~dg~vIgLGsGST~~~~i~~L~~~~~~gl~ItvVttS~~ 78 (255)
T 3hhe_A 24 VQQLKKMAALKALE-FVEDDMRLGIGSGSTVNEFIPLLGERVANGLRVTCVATSQY 78 (255)
T ss_dssp HHHHHHHHHHHHHT-TCCTTEEEEECCSHHHHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred HHHHHHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHHhhccCCcEEEEcCCHH
Confidence 34444444433332 33456899999998765 66777654445678999999853
No 151
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=29.76 E-value=1.6e+02 Score=24.81 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=48.2
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
..+++||-|... ..+.+...|.+.| +.| ..+. + ..++++.+.+..+| +||- ++|+.-+
T Consensus 7 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~al~~~~~~~~d---lvl~D~~lp~~~g~ 67 (184)
T 3rqi_A 7 DKNFLVIDDNEV---FAGTLARGLERRG--YAV--RQAH------N---KDEALKLAGAEKFE---FITVXLHLGNDSGL 67 (184)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHTT--CEE--EEEC------S---HHHHHHHHTTSCCS---EEEECSEETTEESH
T ss_pred CCeEEEEcCCHH---HHHHHHHHHHHCC--CEE--EEeC------C---HHHHHHHHhhCCCC---EEEEeccCCCccHH
Confidence 457888877643 3455666677777 443 3333 2 23445555666777 7764 6788889
Q ss_pred HHHHHHHHhhcCCCeEEEE
Q 013271 192 DMCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~I 210 (446)
++++.+-.. ...+|+|.+
T Consensus 68 ~~~~~l~~~-~~~~~ii~l 85 (184)
T 3rqi_A 68 SLIAPLCDL-QPDARILVL 85 (184)
T ss_dssp HHHHHHHHH-CTTCEEEEE
T ss_pred HHHHHHHhc-CCCCCEEEE
Confidence 999887543 356888777
No 152
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=29.72 E-value=2.7e+02 Score=23.89 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=51.9
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
|+.|-+|..-.+ +.+.|.+.|++.| ++|..+-....++..-.+...++.+.+.+..+|| .|+--|-|.=+-++
T Consensus 3 kIaigsDhaG~~-lK~~i~~~L~~~G--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~--GIliCGTGiG~sia-- 75 (149)
T 2vvr_A 3 KIAFGCDHVGFI-LKHEIVAHLVERG--VEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG--GILICGTGVGISIA-- 75 (149)
T ss_dssp EEEEEECTTGGG-GHHHHHHHHHHTT--CEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSE--EEEEESSSHHHHHH--
T ss_pred EEEEEeCchhHH-HHHHHHHHHHHCC--CEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCce--EEEEeCCcHHHHHH--
Confidence 567778876544 4777999999999 4554331112222222355666666777666775 66666666555444
Q ss_pred HHHhhcCCCeEEEEcCC
Q 013271 197 AAASYLRGVSFIQIPTT 213 (446)
Q Consensus 197 iAa~~~~g~p~i~IPTT 213 (446)
+--.+|+....+-.+
T Consensus 76 --ANKv~GIRAal~~d~ 90 (149)
T 2vvr_A 76 --ANKFAGIRAVVCSEP 90 (149)
T ss_dssp --HHTSTTCCEEECSSH
T ss_pred --HhcCCCeEEEEeCCH
Confidence 233467776655444
No 153
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=29.63 E-value=2.7e+02 Score=24.53 Aligned_cols=85 Identities=9% Similarity=0.001 Sum_probs=51.7
Q ss_pred CEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCcc-HH
Q 013271 116 KKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV-IG 191 (446)
Q Consensus 116 k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGs-v~ 191 (446)
+++-++..... +..+.+.+.+.+++.| +.+. ++.. +.+.+.-.+.++.+...++| .||-.+... .-
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~--~~~~---~~~~~~~~~~~~~l~~~~vd---giIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARG--YQLL--IASS---DDQPDSERQLQQLFRARRCD---ALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTT--CEEE--EEEC---TTCHHHHHHHHHHHHHTTCS---EEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCC--CEEE--EEeC---CCCHHHHHHHHHHHHHcCCC---EEEEecCccccH
Confidence 34555544322 2336777888888888 4443 2322 22456667777888888998 888777652 22
Q ss_pred HHHHHHHHhhcCCCeEEEEcCC
Q 013271 192 DMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+..+. ....++|+|.+-..
T Consensus 73 ~~~~~---~~~~~iPvV~~~~~ 91 (272)
T 3o74_A 73 DSYRE---LQDKGLPVIAIDRR 91 (272)
T ss_dssp CHHHH---HHHTTCCEEEESSC
T ss_pred HHHHH---HHHcCCCEEEEccC
Confidence 23322 23479999998665
No 154
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=29.58 E-value=3.3e+02 Score=24.92 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=48.6
Q ss_pred CCCEEEEEECCCchhH-HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 114 QGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
+.+|+.+|++...+.. ..+.+++.+++.|+.+. ....++.+.. ++ ...++.+++.++| +|+..+.+ .+
T Consensus 137 g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~-~~~~~~~~~~--d~---~~~~~~l~~~~~d---~i~~~~~~--~~ 205 (346)
T 1usg_A 137 KPQRIAIIHDKQQYGEGLARSVQDGLKAANANVV-FFDGITAGEK--DF---SALIARLKKENID---FVYYGGYY--PE 205 (346)
T ss_dssp CCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEE-EEEECCTTCC--CC---HHHHHHHHHTTCC---EEEEESCH--HH
T ss_pred CCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEE-EEeccCCCCc--CH---HHHHHHHHhcCCC---EEEEcCcc--hH
Confidence 4689999988654433 56777888888885331 1223443322 22 2345555666777 88887632 34
Q ss_pred HHHHHHHhhcCC--CeEEE
Q 013271 193 MCGYAAASYLRG--VSFIQ 209 (446)
Q Consensus 193 ~aK~iAa~~~~g--~p~i~ 209 (446)
+.+++.+....| +|++.
T Consensus 206 a~~~~~~~~~~g~~~~~~~ 224 (346)
T 1usg_A 206 MGQMLRQARSVGLKTQFMG 224 (346)
T ss_dssp HHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHcCCCCeEEe
Confidence 455554443333 45443
No 155
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=29.41 E-value=2.3e+02 Score=24.36 Aligned_cols=88 Identities=17% Similarity=0.145 Sum_probs=52.7
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGY 196 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~ 196 (446)
|+.|=+|..-.+ +.+.|.+.|++.| ++|..+-....++..=.+...++.+.+.+..+|| .|+--|-|.=+-++
T Consensus 2 kI~igsDhaG~~-lK~~i~~~L~~~G--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~--GIliCGTGiG~sia-- 74 (149)
T 3he8_A 2 KIGIGSDHGGYN-LKREIADFLKKRG--YEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDR--GIVICGTGLGISIA-- 74 (149)
T ss_dssp EEEEEECGGGHH-HHHHHHHHHHHTT--CEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSE--EEEEESSSHHHHHH--
T ss_pred EEEEEECchhHH-HHHHHHHHHHHCC--CEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCE--EEEEcCCcHHHHHH--
Confidence 456667765444 5788999999998 4553322222222222355667777777777776 66666777655544
Q ss_pred HHHhhcCCCeEEEEcCC
Q 013271 197 AAASYLRGVSFIQIPTT 213 (446)
Q Consensus 197 iAa~~~~g~p~i~IPTT 213 (446)
+--.+|+....+-.+
T Consensus 75 --ANKv~GIRAAl~~d~ 89 (149)
T 3he8_A 75 --ANKVPGIRAAVCTNS 89 (149)
T ss_dssp --HHTSTTCCEEECSSH
T ss_pred --hhcCCCeEEEEeCCH
Confidence 233467776665444
No 156
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=29.30 E-value=1.7e+02 Score=25.19 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=49.1
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhcCCCCe-eEEEEEeCCCCCCCcHHHHHHHHHHH-HHcCCCCcceEEEEc---
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPNV-SVENVILPDGENYKNMDTLMKVFDKA-IESRLDRRCTFVALG--- 186 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~~gi~~-~v~~~i~~~ge~~~t~~~v~~~~~~~-~~~~~dr~~~IIAiG--- 186 (446)
+.|+.||..+.-.. ...+-..+.|.+.|+.. ++..+.+|+. +|.=- +++++ +..++| .||++|
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa-----fEiP~-aa~~la~~~~yD---avIalG~VI 82 (154)
T 1hqk_A 12 GLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGS-----WEIPV-AAGELARKEDID---AVIAIGVLI 82 (154)
T ss_dssp TCCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSG-----GGHHH-HHHHHHTCTTCC---EEEEEEEEE
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH-----HHHHH-HHHHHHhcCCCC---EEEEeeeee
Confidence 45677777664333 35666777888888531 3455666753 33222 22333 344567 999998
Q ss_pred -CccHHH------HHHHHH-HhhcCCCeEEEEc
Q 013271 187 -GGVIGD------MCGYAA-ASYLRGVSFIQIP 211 (446)
Q Consensus 187 -GGsv~D------~aK~iA-a~~~~g~p~i~IP 211 (446)
|++.-+ +++.+. .....++|++.-=
T Consensus 83 rG~T~Hfd~Va~~vs~gl~~v~l~~~vPV~~GV 115 (154)
T 1hqk_A 83 RGATPHFDYIASEVSKGLANLSLELRKPITFGV 115 (154)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred cCCchHHHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 666443 222221 1234678877653
No 157
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=29.29 E-value=2.1e+02 Score=24.81 Aligned_cols=70 Identities=26% Similarity=0.251 Sum_probs=41.4
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhcCC-CC-eeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc---
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTRGN-PN-VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG--- 186 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~~g-i~-~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG--- 186 (446)
+-|+.||..+.-.. ...+...+.|.+.| +. -++..+.+|+.- |.=-.+-..++..++| .||++|
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGaf-----EiP~aa~~la~~~~yD---avIaLG~VI 83 (156)
T 3nq4_A 12 DARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAY-----ELPLATEALAKSGKYD---AVVALGTVI 83 (156)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTT-----THHHHHHHHHHHCSCS---EEEEEEEEE
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHH-----HHHHHHHHHHhcCCCC---EEEEeeeee
Confidence 45788887765333 35666777888888 51 134556667532 2222222223455677 999999
Q ss_pred -CccHHH
Q 013271 187 -GGVIGD 192 (446)
Q Consensus 187 -GGsv~D 192 (446)
|++.-+
T Consensus 84 rG~T~Hf 90 (156)
T 3nq4_A 84 RGGTAHF 90 (156)
T ss_dssp CCSSTHH
T ss_pred cCCchHH
Confidence 676544
No 158
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=28.52 E-value=1.2e+02 Score=24.43 Aligned_cols=47 Identities=9% Similarity=-0.053 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 165 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 165 ~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+++.+.+.+.++| .++||++....-..-+.+..+...++++..+|.-
T Consensus 55 ~~l~~~~~~~~id--~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~ 101 (141)
T 3nkl_A 55 KYLERLIKKHCIS--TVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNL 101 (141)
T ss_dssp GGHHHHHHHHTCC--EEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCH
T ss_pred HHHHHHHHHCCCC--EEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCH
Confidence 3444555667776 4889998776544445444455689999999976
No 159
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=28.31 E-value=1.8e+02 Score=22.57 Aligned_cols=78 Identities=15% Similarity=0.059 Sum_probs=44.1
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcC-CCCcceEEE---EcCccH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESR-LDRRCTFVA---LGGGVI 190 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~-~dr~~~IIA---iGGGsv 190 (446)
..+++||.|... ..+.+.+.|.+.| +++. .+. +.+ ++.+.+.+.. +| +||- +.++.-
T Consensus 7 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~~~---~a~~~~~~~~~~d---lvi~D~~l~~~~g 67 (136)
T 3hdv_A 7 RPLVLVVDDNAV---NREALILYLKSRG--IDAV--GAD------GAE---EARLYLHYQKRIG---LMITDLRMQPESG 67 (136)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHTT--CCEE--EES------SHH---HHHHHHHHCTTEE---EEEECSCCSSSCH
T ss_pred CCeEEEECCCHH---HHHHHHHHHHHcC--ceEE--EeC------CHH---HHHHHHHhCCCCc---EEEEeccCCCCCH
Confidence 457777766543 3455666677777 4442 222 222 3333444444 55 5553 467788
Q ss_pred HHHHHHHHHhhcCCCeEEEEc
Q 013271 191 GDMCGYAAASYLRGVSFIQIP 211 (446)
Q Consensus 191 ~D~aK~iAa~~~~g~p~i~IP 211 (446)
.++++.+-......+|+|.+-
T Consensus 68 ~~~~~~l~~~~~~~~~ii~~s 88 (136)
T 3hdv_A 68 LDLIRTIRASERAALSIIVVS 88 (136)
T ss_dssp HHHHHHHHTSTTTTCEEEEEE
T ss_pred HHHHHHHHhcCCCCCCEEEEe
Confidence 888887743223567777763
No 160
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=28.02 E-value=2.2e+02 Score=22.32 Aligned_cols=77 Identities=10% Similarity=0.142 Sum_probs=46.7
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
..+++||-|... ..+.+...|.+.| +.+ ..+. + ..++++.+.+..+| +||- +.|..-.
T Consensus 4 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~al~~~~~~~~d---lvl~D~~lp~~~g~ 64 (136)
T 3t6k_A 4 PHTLLIVDDDDT---VAEMLELVLRGAG--YEV--RRAA------S---GEEALQQIYKNLPD---ALICDVLLPGIDGY 64 (136)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHTT--CEE--EEES------S---HHHHHHHHHHSCCS---EEEEESCCSSSCHH
T ss_pred CCEEEEEeCCHH---HHHHHHHHHHHCC--CEE--EEeC------C---HHHHHHHHHhCCCC---EEEEeCCCCCCCHH
Confidence 356777766543 3455666677777 444 2332 2 23445555667777 6653 4677788
Q ss_pred HHHHHHHHh-hcCCCeEEEE
Q 013271 192 DMCGYAAAS-YLRGVSFIQI 210 (446)
Q Consensus 192 D~aK~iAa~-~~~g~p~i~I 210 (446)
++++.+-.. ....+|+|.+
T Consensus 65 ~~~~~lr~~~~~~~~pii~~ 84 (136)
T 3t6k_A 65 TLCKRVRQHPLTKTLPILML 84 (136)
T ss_dssp HHHHHHHHSGGGTTCCEEEE
T ss_pred HHHHHHHcCCCcCCccEEEE
Confidence 888877543 2356888776
No 161
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=27.98 E-value=3.3e+02 Score=24.34 Aligned_cols=88 Identities=7% Similarity=-0.017 Sum_probs=52.4
Q ss_pred CCEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 115 GKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
.+++-++..... +..+.+.+.+.+.+.| +.+. ++.. +.+.+...+.++.+.+.++| .||-.+.....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g--~~~~--~~~~---~~~~~~~~~~~~~l~~~~vd---giI~~~~~~~~ 77 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQRLINAFKAEAKANK--YEAL--VATS---QNSRISEREQILEFVHLKVD---AIFITTLDDVY 77 (293)
T ss_dssp -CEEEEEESCSCSHHHHHHHHHHHHHHHHTT--CEEE--EEEC---SSCHHHHHHHHHHHHHTTCS---EEEEECSCTTT
T ss_pred CcEEEEEEecCCcHHHHHHHHHHHHHHHHcC--CEEE--EECC---CCCHHHHHHHHHHHHHcCCC---EEEEecCChHH
Confidence 455666654322 2235677888888888 4443 3322 22456666777778888998 88877654332
Q ss_pred HHHHHHHHhhcCCCeEEEEcCC
Q 013271 192 DMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~IPTT 213 (446)
....+......++|+|.+-..
T Consensus 78 -~~~~~~~~~~~~iPvV~~~~~ 98 (293)
T 3l6u_A 78 -IGSAIEEAKKAGIPVFAIDRM 98 (293)
T ss_dssp -THHHHHHHHHTTCCEEEESSC
T ss_pred -HHHHHHHHHHcCCCEEEecCC
Confidence 112222233469999999765
No 162
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=27.84 E-value=3e+02 Score=23.80 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=54.5
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 194 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~a 194 (446)
.-++.|=+|..-.+ +.+.|.+.|++.| ++|..+-....++..-.+...++.+.+.+..+|| .|+--|-|.=+-++
T Consensus 12 ~~~i~igsDhaG~~-lK~~i~~~L~~~G--~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~--GIliCGTGiG~sia 86 (155)
T 1o1x_A 12 HVKIAIASDHAAFE-LKEKVKNYLLGKG--IEVEDHGTYSEESVDYPDYAKKVVQSILSNEADF--GILLCGTGLGMSIA 86 (155)
T ss_dssp CCEEEEEECSTTHH-HHHHHHHHHHHTT--CEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSE--EEEEESSSHHHHHH
T ss_pred ceeEEEeeCchHHH-HHHHHHHHHHHCC--CEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCce--EEEEcCCcHHHHHH
Confidence 45678888876554 5788999999999 4554332122222222355667777777777776 66666776655444
Q ss_pred HHHHHhhcCCCeEEEEcCC
Q 013271 195 GYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 195 K~iAa~~~~g~p~i~IPTT 213 (446)
+--.+|+....+-.+
T Consensus 87 ----ANKv~GIRAAl~~d~ 101 (155)
T 1o1x_A 87 ----ANRYRGIRAALCLFP 101 (155)
T ss_dssp ----HTTSTTCCEEECSSH
T ss_pred ----hhcCCCeEEEEeCCH
Confidence 233467766555444
No 163
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=27.48 E-value=3e+02 Score=24.93 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeE
Q 013271 128 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSF 207 (446)
Q Consensus 128 ~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~ 207 (446)
..+.+.+.+.+.+.| +.+ .++.. +.+.+.-.+.++.+...++| .||-++....-+..+. ....++|+
T Consensus 28 ~~~~~gi~~~a~~~g--~~~--~~~~~---~~~~~~~~~~~~~l~~~~vd---GiI~~~~~~~~~~~~~---l~~~~iPv 94 (295)
T 3hcw_A 28 INVLLGISETCNQHG--YGT--QTTVS---NNMNDLMDEVYKMIKQRMVD---AFILLYSKENDPIKQM---LIDESMPF 94 (295)
T ss_dssp HHHHHHHHHHHHTTT--CEE--EECCC---CSHHHHHHHHHHHHHTTCCS---EEEESCCCTTCHHHHH---HHHTTCCE
T ss_pred HHHHHHHHHHHHHCC--CEE--EEEcC---CCChHHHHHHHHHHHhCCcC---EEEEcCcccChHHHHH---HHhCCCCE
Confidence 336777888888988 443 33332 22445566778888888998 8888765533233332 23469999
Q ss_pred EEEcCC
Q 013271 208 IQIPTT 213 (446)
Q Consensus 208 i~IPTT 213 (446)
|.+-..
T Consensus 95 V~i~~~ 100 (295)
T 3hcw_A 95 IVIGKP 100 (295)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999765
No 164
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=27.34 E-value=1.7e+02 Score=27.81 Aligned_cols=96 Identities=7% Similarity=0.107 Sum_probs=52.9
Q ss_pred hHhhhcCCCCEEEEEECCCchhH-HHHHHHHHHhcCCCCee--------------------EEEEEeCCCCCCCcHHHHH
Q 013271 107 DLLQKHVQGKKVLVVTNNTVAPL-YLDKVTDALTRGNPNVS--------------------VENVILPDGENYKNMDTLM 165 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v~~~-~~~~v~~~L~~~gi~~~--------------------v~~~i~~~ge~~~t~~~v~ 165 (446)
++++.+ +.+++.+|++..-+.. ..+.+++.+++.|+++. .....++. +...+.
T Consensus 132 ~~~~~~-gw~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~-----~~~d~~ 205 (384)
T 3qek_A 132 EMMRLF-NWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEP-----GTKNLT 205 (384)
T ss_dssp HHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECT-----TCSCCH
T ss_pred HHHHHc-CCeEEEEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCC-----chhhHH
Confidence 455444 5689988877665544 67888888888774210 00111121 223455
Q ss_pred HHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCe---EEEEcCC
Q 013271 166 KVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS---FIQIPTT 213 (446)
Q Consensus 166 ~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p---~i~IPTT 213 (446)
..+..+++.+++ +||..|.+ -|+..++......|+. ++-|-|.
T Consensus 206 ~~l~~i~~~~~~---vii~~~~~--~~~~~~~~~a~~~g~~~~~~~~i~~~ 251 (384)
T 3qek_A 206 ALLLEAKELEAR---VIILSASE--DDATAVYKSAAMLDMTGAGYVWLVGE 251 (384)
T ss_dssp HHHHHHHTSSCC---EEEEECCH--HHHHHHHHHHHHTTCSSTTCEEECCS
T ss_pred HHHHHHHhcCCc---EEEEECCH--HHHHHHHHHHHHcCCccCCeEEEEec
Confidence 666777888888 88877654 4566555444444433 5666555
No 165
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=27.17 E-value=1.8e+02 Score=25.61 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=49.9
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHH----HHHHHHHHHHcCCCCcceEEEEcCc-c
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDT----LMKVFDKAIESRLDRRCTFVALGGG-V 189 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~----v~~~~~~~~~~~~dr~~~IIAiGGG-s 189 (446)
.+|+.|+.-+++...=.-...+.|...| +++.++-..+..+-.+... .+..++.+....+| .||-.||- .
T Consensus 9 ~~~v~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D---~livpGG~~~ 83 (208)
T 3ot1_A 9 SKRILVPVAHGSEEMETVIIVDTLVRAG--FQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFD---ALALPGGVGG 83 (208)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTT--CEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCS---EEEECCCHHH
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHHCC--CEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCC---EEEECCCchH
Confidence 4677777666666653444556777787 5665444321111111000 00001111112345 88877873 3
Q ss_pred HHH------HHHHHHHhhcCCCeEEEEcCC
Q 013271 190 IGD------MCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 190 v~D------~aK~iAa~~~~g~p~i~IPTT 213 (446)
.-+ +.+++...+.++.++.+|+|.
T Consensus 84 ~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G 113 (208)
T 3ot1_A 84 AQAFADSTALLALIDAFSQQGKLVAAICAT 113 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTCEEEEETTH
T ss_pred HHHHhhCHHHHHHHHHHHHcCCEEEEEChh
Confidence 332 345565667899999999987
No 166
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=27.00 E-value=2.2e+02 Score=26.31 Aligned_cols=72 Identities=8% Similarity=0.140 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEE
Q 013271 129 LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFI 208 (446)
Q Consensus 129 ~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i 208 (446)
.+.+-+.+.+++.| +++ .++.. ..+.+..++.++.+.+.++| .||.+|.+. .|....++ .-..++|++
T Consensus 24 ~~~~gi~~~~~~~g--~~~--~~~~~---~~~~~~~~~~l~~l~~~~vd---gIi~~~~~~-~~~~~~~~-~~~p~~p~v 91 (296)
T 2hqb_A 24 KAYEGLLNIHSNLD--VDV--VLEEG---VNSEQKAHRRIKELVDGGVN---LIFGHGHAF-AEYFSTIH-NQYPDVHFV 91 (296)
T ss_dssp HHHHHHHHHHHHSC--CEE--EEECC---CCSHHHHHHHHHHHHHTTCC---EEEECSTHH-HHHHHTTT-TSCTTSEEE
T ss_pred HHHHHHHHHHHHhC--CeE--EEEeC---CCCHHHHHHHHHHHHHCCCC---EEEEcCHhH-HHHHHHHH-HHCCCCEEE
Confidence 35667777888888 443 33332 12334555678888888999 999887553 33322221 112478999
Q ss_pred EEcC
Q 013271 209 QIPT 212 (446)
Q Consensus 209 ~IPT 212 (446)
.|-.
T Consensus 92 ~id~ 95 (296)
T 2hqb_A 92 SFNG 95 (296)
T ss_dssp EESC
T ss_pred EEec
Confidence 8843
No 167
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=26.69 E-value=1.5e+02 Score=25.77 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=36.6
Q ss_pred HHHHHHHHHh---cCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHc-CCCCcceEEEEcCccHH--HHHHH
Q 013271 130 YLDKVTDALT---RGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIG--DMCGY 196 (446)
Q Consensus 130 ~~~~v~~~L~---~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~-~~dr~~~IIAiGGGsv~--D~aK~ 196 (446)
-...+.+.|+ +.|. ++...++++ +.+.+.+.++.+.+. ++| +||--||=++. |+.+-
T Consensus 26 n~~~l~~~l~~l~~~G~--~v~~~iv~D-----d~~~I~~~l~~~~~~~~~D---lVittGG~g~g~~D~t~e 88 (178)
T 2pbq_A 26 SGKAIIDYLKDVIITPF--EVEYRVIPD-----ERDLIEKTLIELADEKGCS---LILTTGGTGPAPRDVTPE 88 (178)
T ss_dssp HHHHHHHHHHHHBCSCC--EEEEEEECS-----CHHHHHHHHHHHHHTSCCS---EEEEESCCSSSTTCCHHH
T ss_pred hHHHHHHHHHHHHhCCC--EEEEEEcCC-----CHHHHHHHHHHHHhcCCCC---EEEECCCCCCCCCCchHH
Confidence 3455666565 8884 554445553 456777777766653 677 99999997776 55543
No 168
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=26.17 E-value=99 Score=27.45 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 128 PLYLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 128 ~~~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
+.-...+.+.|++.| +++.. .++++ +.+.+.+.++.+.+.++| +||--||=++.+
T Consensus 48 Dsn~~~L~~~L~~~G--~~v~~~~iv~D-----d~~~I~~al~~a~~~~~D---lVIttGGts~g~ 103 (185)
T 3rfq_A 48 DHSGPLVTELLTEAG--FVVDGVVAVEA-----DEVDIRNALNTAVIGGVD---LVVSVGGTGVTP 103 (185)
T ss_dssp CSHHHHHHHHHHHTT--EEEEEEEEECS-----CHHHHHHHHHHHHHTTCS---EEEEESCCSSST
T ss_pred CcHHHHHHHHHHHCC--CEEEEEEEeCC-----CHHHHHHHHHHHHhCCCC---EEEECCCCCCCC
Confidence 345667778888888 44433 34443 457777777666555677 999999988764
No 169
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=25.85 E-value=2.5e+02 Score=25.71 Aligned_cols=35 Identities=11% Similarity=-0.002 Sum_probs=25.6
Q ss_pred ceEEEEcCccH------------------HHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 180 CTFVALGGGVI------------------GDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 180 ~~IIAiGGGsv------------------~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
|.||--||-.. -++..++...+..+.|+.+|++..
T Consensus 109 D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~ 161 (242)
T 3l3b_A 109 DMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISP 161 (242)
T ss_dssp SEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHH
T ss_pred CEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 48887777543 245666666678999999999874
No 170
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=25.77 E-value=2.9e+02 Score=24.50 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=53.5
Q ss_pred EEEEEECCCchhHHHHHHHHHHhc--CCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTR--GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMC 194 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~--~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~a 194 (446)
|+.|-+|..-.+ +.+.|.++|++ .| ++|..+-....++..-.+...++.+.+.+..+|| .|+--|-|.=+-++
T Consensus 24 kIaIgsDhaG~~-lK~~i~~~L~~~~~G--~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g~~d~--GIliCGTGiG~sIa 98 (179)
T 3k7p_A 24 RVAIGTDHPAFA-IHENLILYVKEAGDE--FVPVYCGPKTAESVDYPDFASRVAEMVARKEVEF--GVLAAGSGIGMSIA 98 (179)
T ss_dssp EEEEEECTGGGG-GHHHHHHHHHHTCTT--EEEEECSCSSSSCCCHHHHHHHHHHHHHTTSSSE--EEEEESSSHHHHHH
T ss_pred EEEEEECchHHH-HHHHHHHHHHhcCCC--CeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCE--EEEEccCcHHHhhH
Confidence 688888886554 57888899988 87 5543321122222222355667777777777886 66666766655444
Q ss_pred HHHHHhhcCCCeEEEEcCC
Q 013271 195 GYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 195 K~iAa~~~~g~p~i~IPTT 213 (446)
+--.+|+....+-.+
T Consensus 99 ----ANKv~GIRAAlc~d~ 113 (179)
T 3k7p_A 99 ----ANKVPGVRAALCHDH 113 (179)
T ss_dssp ----HHTSTTCCEEECCSH
T ss_pred ----hhcCCCeEEEEeCCH
Confidence 223467776665444
No 171
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=25.58 E-value=1.9e+02 Score=26.04 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=25.9
Q ss_pred ceEEEEcCccH-----------------HHHHHHHHHhhcCCCeEEEEcCCc
Q 013271 180 CTFVALGGGVI-----------------GDMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 180 ~~IIAiGGGsv-----------------~D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
|+||--||-.. -++.+++...+.++.++.+|+|..
T Consensus 92 D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~ 143 (232)
T 1vhq_A 92 DALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAP 143 (232)
T ss_dssp SEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGG
T ss_pred CEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 48888887543 235666766778999999999974
No 172
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=25.49 E-value=2.4e+02 Score=24.51 Aligned_cols=89 Identities=10% Similarity=0.136 Sum_probs=48.6
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhc-CCCC-eeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEc---
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTR-GNPN-VSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALG--- 186 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~-~gi~-~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiG--- 186 (446)
+-|+.||..+.-.. ...+-..+.|.+ .|++ -+++.+.+|+ .+|.=-.+-..++..++| .||++|
T Consensus 17 ~~riaIV~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPG-----afEiP~aa~~la~~~~yD---avIaLG~VI 88 (159)
T 1kz1_A 17 ELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPG-----SWELPQGIRASIARNTYD---AVIGIGVLI 88 (159)
T ss_dssp TCCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSS-----GGGHHHHHHHHHHHSCCS---EEEEEEEEE
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCc-----HHHHHHHHHHHHhcCCCC---EEEEecccc
Confidence 45788887764333 356666677888 7752 1345566665 333222222233445677 999998
Q ss_pred -CccHHH------HHHHHH-HhhcCCCeEEEEc
Q 013271 187 -GGVIGD------MCGYAA-ASYLRGVSFIQIP 211 (446)
Q Consensus 187 -GGsv~D------~aK~iA-a~~~~g~p~i~IP 211 (446)
|++.-+ +++.+. .....++|++.-=
T Consensus 89 rG~T~Hfd~Va~~v~~Gl~~v~L~~~vPV~~GV 121 (159)
T 1kz1_A 89 KGSTMHFEYISEAVVHGLMRVGLDSGVPVILGL 121 (159)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCCchHHHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 665333 222222 1234678776543
No 173
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=25.44 E-value=3.7e+02 Score=24.11 Aligned_cols=74 Identities=9% Similarity=0.089 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEE
Q 013271 130 YLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQ 209 (446)
Q Consensus 130 ~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~ 209 (446)
+.+-+.+.+++.| +++ .++.... .+.+...+.++.+...++| .||-.+... -+....+......++|+|.
T Consensus 22 ~~~g~~~~~~~~g--~~~--~~~~~~~--~~~~~~~~~~~~l~~~~vd---giii~~~~~-~~~~~~~~~~~~~~ipvV~ 91 (303)
T 3d02_A 22 MGEGVVQAGKEFN--LNA--SQVGPSS--TDAPQQVKIIEDLIARKVD---AITIVPNDA-NVLEPVFKKARDAGIVVLT 91 (303)
T ss_dssp HHHHHHHHHHHTT--EEE--EEECCSS--SCHHHHHHHHHHHHHTTCS---EEEECCSCH-HHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcC--CEE--EEECCCC--CCHHHHHHHHHHHHHcCCC---EEEEecCCh-HHHHHHHHHHHHCCCeEEE
Confidence 5667777888888 443 2222222 2445556667777778888 887766532 2222222223347899999
Q ss_pred EcCC
Q 013271 210 IPTT 213 (446)
Q Consensus 210 IPTT 213 (446)
+-+.
T Consensus 92 ~~~~ 95 (303)
T 3d02_A 92 NESP 95 (303)
T ss_dssp ESCT
T ss_pred EecC
Confidence 8654
No 174
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=25.29 E-value=3.3e+02 Score=23.45 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=50.8
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCC-----------CCCcHHHHHHHHHHHHHcCCCCcceEE
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGE-----------NYKNMDTLMKVFDKAIESRLDRRCTFV 183 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge-----------~~~t~~~v~~~~~~~~~~~~dr~~~II 183 (446)
.+|+.|+.-+++...=.-...+.|...| +++.++-..+++ +..+++.+. ....+| .||
T Consensus 3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~------~~~~~D---~li 71 (197)
T 2rk3_A 3 SKRALVILAKGAEEMETVIPVDVMRRAG--IKVTVAGLAGKDPVQCSRDVVICPDASLEDAK------KEGPYD---VVV 71 (197)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTT--CEEEEEETTCSSCEECTTSCEECCSEEHHHHH------TTCCCS---EEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHHCC--CEEEEEEcCCCCccccCCCCEEeCCcCHHHcC------CccCCC---EEE
Confidence 3577777666666553344556677777 566544433332 122222220 123455 888
Q ss_pred EEcCc-cHHH------HHHHHHHhhcCCCeEEEEcCCc
Q 013271 184 ALGGG-VIGD------MCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 184 AiGGG-sv~D------~aK~iAa~~~~g~p~i~IPTTl 214 (446)
-.||. ..-+ +.+++...+.++.++.+|.|..
T Consensus 72 vpGG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~ 109 (197)
T 2rk3_A 72 LPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGP 109 (197)
T ss_dssp ECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH
T ss_pred ECCCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 88874 3433 3345555577899999999884
No 175
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Probab=25.24 E-value=2.9e+02 Score=27.22 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=55.4
Q ss_pred CceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCc-HH-----HH
Q 013271 92 RSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN-MD-----TL 164 (446)
Q Consensus 92 ~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t-~~-----~v 164 (446)
-+..|+.+.+.-.+ ...++. .+.++.+.++....+...+...+..++.+. ++ .....|+. .. ..
T Consensus 169 l~~~ivmp~~~~~~k~~~~~~--~GAeVv~~v~~~~~~da~~~a~~~~~~~g~-----~~--~~p~~N~~~~~~~~~t~g 239 (389)
T 1wkv_A 169 YRARVYLPGAAEEFGKLLPRL--LGAQVIVDPEAPSTVHLLPRVMKDSKNEGF-----VH--VNQFYNDANFEAHMRGTA 239 (389)
T ss_dssp CEEEEEEETTSCHHHHHHHHH--TTCEEEEETTCSSSGGGHHHHHHHHHHHCC-----EE--CCTTTCHHHHHHHHHTHH
T ss_pred CeEEEEECCCCCHHHHHHHHH--cCCEEEEEcCCCCHHHHHHHHHHHHHccCc-----Ee--cCcCCChHHHHHHHHHHH
Confidence 44667777774222 334444 467777455522233333444444444441 11 21111222 11 22
Q ss_pred HHHHHHHHHcCCCCcceEEEEcCccHHH-HHHHHHHhhcCCCeEEEEcCC
Q 013271 165 MKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 165 ~~~~~~~~~~~~dr~~~IIAiGGGsv~D-~aK~iAa~~~~g~p~i~IPTT 213 (446)
.++++++.+.+..-+.+|+++|||+.+= ++++.. .....+++|.|...
T Consensus 240 ~Ei~~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k-~~~p~vrvigVe~~ 288 (389)
T 1wkv_A 240 REIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQ-SVDPSIRAVLVQPA 288 (389)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHH-HHCTTCEEEEEEEC
T ss_pred HHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHH-HhCCCCeEEEEecC
Confidence 4666666543322245888999887743 333322 12356788888654
No 176
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=25.22 E-value=1.5e+02 Score=26.84 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=39.5
Q ss_pred EEEEEEC---CCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHH
Q 013271 117 KVLVVTN---NTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE 173 (446)
Q Consensus 117 ~vliVtd---~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~ 173 (446)
.++++.+ +.+--...++..+.|++.| +.+++..+++..+.=+.+.++.+.+++++
T Consensus 185 Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g--~~v~~~~y~g~gH~i~~~~l~~~~~fL~k 242 (246)
T 4f21_A 185 PILVCHGTDDQVLPEVLGHDLSDKLKVSG--FANEYKHYVGMQHSVCMEEIKDISNFIAK 242 (246)
T ss_dssp CEEEEEETTCSSSCHHHHHHHHHHHHTTT--CCEEEEEESSCCSSCCHHHHHHHHHHHHH
T ss_pred chhhcccCCCCccCHHHHHHHHHHHHHCC--CCeEEEEECCCCCccCHHHHHHHHHHHHH
Confidence 4777654 3333337888999999999 46777788875565677888888888765
No 177
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=24.96 E-value=4e+02 Score=24.30 Aligned_cols=88 Identities=6% Similarity=0.009 Sum_probs=52.3
Q ss_pred CEEEEEECCC---chhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 116 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 116 k~vliVtd~~---v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
+++-++.... .+..+.+-+.+.+++.| +.+.+ +.. +.+.+.-.+.++.+...++| .||-.+.... .
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~--~~~---~~~~~~~~~~i~~~~~~~vd---giIi~~~~~~-~ 72 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAG--YKTDL--QYA---DDDIPNQLSQIENMVTKGVK---VLVIASIDGT-T 72 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTT--CEEEE--EEC---TTCHHHHHHHHHHHHHHTCS---EEEECCSSGG-G
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcC--CEEEE--eeC---CCCHHHHHHHHHHHHHcCCC---EEEEEcCCch-h
Confidence 4555554432 23336777888888988 44432 221 23456666677777788898 8887765421 1
Q ss_pred HHHHHHHhhcCCCeEEEEcCCc
Q 013271 193 MCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 193 ~aK~iAa~~~~g~p~i~IPTTl 214 (446)
....+......++|+|.+-+..
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~~ 94 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRLI 94 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSCC
T ss_pred HHHHHHHHHHCCCCEEEECCCC
Confidence 1122222335799999997763
No 178
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=24.65 E-value=2.6e+02 Score=22.14 Aligned_cols=78 Identities=10% Similarity=0.042 Sum_probs=46.2
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 192 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~D 192 (446)
-+++||.|... ..+.+...|.+.+- ...+..+. +..++++.+.+..+| +||- +.+....+
T Consensus 21 ~~iLivdd~~~---~~~~l~~~L~~~~~--~~~v~~~~---------~~~~al~~l~~~~~d---lii~D~~l~~~~g~~ 83 (150)
T 4e7p_A 21 MKVLVAEDQSM---LRDAMCQLLTLQPD--VESVLQAK---------NGQEAIQLLEKESVD---IAILDVEMPVKTGLE 83 (150)
T ss_dssp EEEEEECSCHH---HHHHHHHHHHTSTT--EEEEEEES---------SHHHHHHHHTTSCCS---EEEECSSCSSSCHHH
T ss_pred cEEEEEcCCHH---HHHHHHHHHHhCCC--cEEEEEEC---------CHHHHHHHhhccCCC---EEEEeCCCCCCcHHH
Confidence 46777766543 45666667776641 11222222 234455555667777 6653 46788889
Q ss_pred HHHHHHHhhcCCCeEEEEc
Q 013271 193 MCGYAAASYLRGVSFIQIP 211 (446)
Q Consensus 193 ~aK~iAa~~~~g~p~i~IP 211 (446)
+++.+... ...+|+|.+-
T Consensus 84 ~~~~l~~~-~~~~~ii~ls 101 (150)
T 4e7p_A 84 VLEWIRSE-KLETKVVVVT 101 (150)
T ss_dssp HHHHHHHT-TCSCEEEEEE
T ss_pred HHHHHHHh-CCCCeEEEEe
Confidence 88887543 3567777763
No 179
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=24.49 E-value=85 Score=25.29 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=25.6
Q ss_pred CCEEEEEECCCchhH--HHHHHHHHHhcCCCCe
Q 013271 115 GKKVLVVTNNTVAPL--YLDKVTDALTRGNPNV 145 (446)
Q Consensus 115 ~k~vliVtd~~v~~~--~~~~v~~~L~~~gi~~ 145 (446)
.+|+++|++.++.-. ...++++.+++.|+.+
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~ 53 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSHNIPV 53 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCE
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 468999999998765 5799999999998643
No 180
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=24.36 E-value=4.2e+02 Score=24.75 Aligned_cols=38 Identities=11% Similarity=-0.022 Sum_probs=27.2
Q ss_pred CCcceEEEEcCccHH-------HHHHHHHHhhcCCCeEEEEcCCc
Q 013271 177 DRRCTFVALGGGVIG-------DMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 177 dr~~~IIAiGGGsv~-------D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
+.-|+||-.||--.+ ++.+++...+.++.++.+|++..
T Consensus 144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp 188 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGP 188 (291)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGG
T ss_pred ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccH
Confidence 344688888883333 35566666678999999999975
No 181
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=24.02 E-value=3.6e+02 Score=24.12 Aligned_cols=87 Identities=7% Similarity=-0.042 Sum_probs=51.2
Q ss_pred CCEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccH-
Q 013271 115 GKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI- 190 (446)
Q Consensus 115 ~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv- 190 (446)
.+++-++..... +..+.+-+.+.+++.| +++.+ +... ...+.+.-.+.++.+...++| .||-.+....
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g--~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~vd---giii~~~~~~~ 76 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEKQG--VNLRV--LEAG-GYPNKSRQEQQLALCTQWGAN---AIILGTVDPHA 76 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHHT--CEEEE--EECS-STTCHHHHHHHHHHHHHHTCS---EEEECCSSTTS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHHcC--CeEEE--EcCC-CCCCHHHHHHHHHHHHHcCCC---EEEEeCCChhH
Confidence 345656554322 2235677777888888 44432 3221 112556666777878888998 8887765433
Q ss_pred -HHHHHHHHHhhcCCCeEEEEcCC
Q 013271 191 -GDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 191 -~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
.+..+. .. .++|+|.+-..
T Consensus 77 ~~~~~~~---~~-~~iPvV~~~~~ 96 (304)
T 3o1i_D 77 YEHNLKS---WV-GNTPVFATVNQ 96 (304)
T ss_dssp STTTHHH---HT-TTSCEEECSSC
T ss_pred HHHHHHH---Hc-CCCCEEEecCC
Confidence 233332 33 79999998444
No 182
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=23.77 E-value=1.2e+02 Score=25.53 Aligned_cols=19 Identities=16% Similarity=0.072 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCCCeeEEE
Q 013271 129 LYLDKVTDALTRGNPNVSVEN 149 (446)
Q Consensus 129 ~~~~~v~~~L~~~gi~~~v~~ 149 (446)
-|.+.|.+.|.+.|+ .++.
T Consensus 22 ~YA~~V~~~L~~~Gi--Rvev 40 (130)
T 1v95_A 22 DYAESVGRKVRDLGM--VVDL 40 (130)
T ss_dssp HHHHHHHHHHHTTTC--CEEE
T ss_pred HHHHHHHHHHHHCCC--EEEE
Confidence 489999999999995 5543
No 183
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=23.74 E-value=2.7e+02 Score=25.06 Aligned_cols=86 Identities=10% Similarity=0.085 Sum_probs=49.5
Q ss_pred CCEEEEEECC-----CchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCcc
Q 013271 115 GKKVLVVTNN-----TVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGV 189 (446)
Q Consensus 115 ~k~vliVtd~-----~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGs 189 (446)
.+.+-+|... ..+..+.+.+.+.+.+.| +.+ .++.... +.+...++.+.+...++| .||-++...
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g--~~~--~~~~~~~---~~~~~~~~~~~l~~~~vd---giIi~~~~~ 77 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLSTTQ--YHL--VVTPHIH---AKDSMVPIRYILETGSAD---GVIISKIEP 77 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSS--CEE--EECCBSS---GGGTTHHHHHHHHHTCCS---EEEEESCCT
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHHHcC--CEE--EEecCCc---chhHHHHHHHHHHcCCcc---EEEEecCCC
Confidence 4455555542 233446778888888888 443 3332211 112234455556778888 888776543
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 190 IGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
.-+..+. ....++|+|.+-..
T Consensus 78 ~~~~~~~---l~~~~iPvV~i~~~ 98 (288)
T 3gv0_A 78 NDPRVRF---MTERNMPFVTHGRS 98 (288)
T ss_dssp TCHHHHH---HHHTTCCEEEESCC
T ss_pred CcHHHHH---HhhCCCCEEEECCc
Confidence 3333332 23479999998765
No 184
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=23.72 E-value=3.2e+02 Score=23.88 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=40.1
Q ss_pred CCEEEEEECCCchh---HHHHHHHHHHhcCCCC-eeEEEEEeCCCCCCCcHHHHHHHHHHHH--HcCCCCcceEEEEc--
Q 013271 115 GKKVLVVTNNTVAP---LYLDKVTDALTRGNPN-VSVENVILPDGENYKNMDTLMKVFDKAI--ESRLDRRCTFVALG-- 186 (446)
Q Consensus 115 ~k~vliVtd~~v~~---~~~~~v~~~L~~~gi~-~~v~~~i~~~ge~~~t~~~v~~~~~~~~--~~~~dr~~~IIAiG-- 186 (446)
+-|+.||..+.-.. ...+-..+.|.+.|+. -++..+.+|+.-+-| -.+.++.+.-. ..++| .||++|
T Consensus 16 ~~ri~IV~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP--~aak~la~~~~~~~~~yD---avIaLG~V 90 (168)
T 1ejb_A 16 KIRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELP--WGTKRFVDRQAKLGKPLD---VVIPIGVL 90 (168)
T ss_dssp TCCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHH--HHHHHHHHHHHHTTCCCS---EEEEEEEE
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHH--HHHHHHHhhccccCCCcC---EEEEeccc
Confidence 35788887765333 3566677788888853 234555666532211 12222222110 34567 999998
Q ss_pred --CccHHH
Q 013271 187 --GGVIGD 192 (446)
Q Consensus 187 --GGsv~D 192 (446)
|++.-+
T Consensus 91 IrG~T~Hf 98 (168)
T 1ejb_A 91 IKGSTMHF 98 (168)
T ss_dssp ECCSSSHH
T ss_pred ccCCchHH
Confidence 565443
No 185
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=23.66 E-value=2.3e+02 Score=21.88 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=43.2
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE-E--c-----C
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA-L--G-----G 187 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA-i--G-----G 187 (446)
.+++||.|... ..+.+...|.+.| +.+. .+. + ..++.+.+.+..+| +||- + . +
T Consensus 4 ~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~l~~~~~d---lvi~d~~~~~~~~~~ 64 (140)
T 2qr3_A 4 GTIIIVDDNKG---VLTAVQLLLKNHF--SKVI--TLS------S---PVSLSTVLREENPE---VVLLDMNFTSGINNG 64 (140)
T ss_dssp CEEEEECSCHH---HHHHHHHHHTTTS--SEEE--EEC------C---HHHHHHHHHHSCEE---EEEEETTTTC-----
T ss_pred ceEEEEeCCHH---HHHHHHHHHHhCC--cEEE--EeC------C---HHHHHHHHHcCCCC---EEEEeCCcCCCCCCC
Confidence 57788766543 4566777787777 4432 322 2 23444455556665 5543 2 2 5
Q ss_pred ccHHHHHHHHHHhhcCCCeEEEE
Q 013271 188 GVIGDMCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 188 Gsv~D~aK~iAa~~~~g~p~i~I 210 (446)
....++.+.+... ...+|+|.+
T Consensus 65 ~~g~~~~~~l~~~-~~~~~ii~l 86 (140)
T 2qr3_A 65 NEGLFWLHEIKRQ-YRDLPVVLF 86 (140)
T ss_dssp CCHHHHHHHHHHH-CTTCCEEEE
T ss_pred ccHHHHHHHHHhh-CcCCCEEEE
Confidence 5677888776543 356788776
No 186
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=23.53 E-value=1.2e+02 Score=27.27 Aligned_cols=82 Identities=11% Similarity=0.102 Sum_probs=45.9
Q ss_pred CCEEEEEECCC---chhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 115 GKKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~---v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
.+++-++.... .+..+.+.+.+.+.+.| +.+. ++..... +.-.+.++.+.+.++| .|| ++....-
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~--~~~~~~~----~~~~~~~~~l~~~~vd---giI-~~~~~~~ 72 (280)
T 3gyb_A 5 TQLIAVLIDDYSNPWFIDLIQSLSDVLTPKG--YRLS--VIDSLTS----QAGTDPITSALSMRPD---GII-IAQDIPD 72 (280)
T ss_dssp CCEEEEEESCTTSGGGHHHHHHHHHHHGGGT--CEEE--EECSSSS----CSSSCHHHHHHTTCCS---EEE-EESCC--
T ss_pred cCEEEEEeCCCCChHHHHHHHHHHHHHHHCC--CEEE--EEeCCCc----hHHHHHHHHHHhCCCC---EEE-ecCCCCh
Confidence 45566665432 23336777888888988 4443 3332222 2223445556778888 999 8876553
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCc
Q 013271 192 DMCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~IPTTl 214 (446)
+..+. .++|+|.+-...
T Consensus 73 ~~~~~------~~iPvV~~~~~~ 89 (280)
T 3gyb_A 73 FTVPD------SLPPFVIAGTRI 89 (280)
T ss_dssp ------------CCCEEEESCCC
T ss_pred hhHhh------cCCCEEEECCCC
Confidence 32221 799999987663
No 187
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=23.48 E-value=3.8e+02 Score=23.53 Aligned_cols=75 Identities=5% Similarity=0.081 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcC-CCCcceEEEEcCc--cHHHHHHHHHHhhcCC
Q 013271 128 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESR-LDRRCTFVALGGG--VIGDMCGYAAASYLRG 204 (446)
Q Consensus 128 ~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~-~dr~~~IIAiGGG--sv~D~aK~iAa~~~~g 204 (446)
..+.+.+.+.+++.| +.+ .++. ...+.+.+.-.+.++.+.+.+ +| .||-.+.. ..-+..+. ....+
T Consensus 16 ~~~~~gi~~~~~~~g--~~~--~~~~-~~~~~~~~~~~~~i~~l~~~~~vd---gii~~~~~~~~~~~~~~~---~~~~~ 84 (276)
T 3ksm_A 16 RQVYLGAQKAADEAG--VTL--LHRS-TKDDGDIAGQIQILSYHLSQAPPD---ALILAPNSAEDLTPSVAQ---YRARN 84 (276)
T ss_dssp HHHHHHHHHHHHHHT--CEE--EECC-CSSTTCHHHHHHHHHHHHHHSCCS---EEEECCSSTTTTHHHHHH---HHHTT
T ss_pred HHHHHHHHHHHHHcC--CEE--EEEC-CCCCCCHHHHHHHHHHHHHhCCCC---EEEEeCCCHHHHHHHHHH---HHHCC
Confidence 336777888888888 443 2332 112235566667778888888 99 88888743 22333333 23569
Q ss_pred CeEEEEcCC
Q 013271 205 VSFIQIPTT 213 (446)
Q Consensus 205 ~p~i~IPTT 213 (446)
+|+|.+-+.
T Consensus 85 ipvV~~~~~ 93 (276)
T 3ksm_A 85 IPVLVVDSD 93 (276)
T ss_dssp CCEEEESSC
T ss_pred CcEEEEecC
Confidence 999999765
No 188
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=23.43 E-value=4e+02 Score=23.87 Aligned_cols=86 Identities=13% Similarity=0.177 Sum_probs=51.3
Q ss_pred CCEEEEEECCC---chhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 115 GKKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~---v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
.+++-++.... .+..+.+.+.+.+++.| +.+. ++.. +.+.+.-.+.++.+...++| .||-.+....-
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~--~~~~---~~~~~~~~~~~~~l~~~~vd---giIi~~~~~~~ 85 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYK--YNII--LSNS---DQNMEKELHLLNTMLGKQVD---GIVFMGGNITD 85 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTT--CEEE--EEEC---TTCHHHHHHHHHHHHHTTCS---EEEECCSCCCH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcC--CEEE--EEeC---CCCHHHHHHHHHHHHhCCCC---EEEEecCCCCH
Confidence 34555555432 12235677778888888 4443 2322 22445556677778888898 88887753322
Q ss_pred HHHHHHHHhhcCCCeEEEEcCC
Q 013271 192 DMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+..+.+ ...++|+|.+-..
T Consensus 86 ~~~~~l---~~~~iPvV~~~~~ 104 (289)
T 2fep_A 86 EHVAEF---KRSPVPIVLAASV 104 (289)
T ss_dssp HHHHHH---HHSSSCEEEESCC
T ss_pred HHHHHH---HhcCCCEEEEccc
Confidence 222222 2478999999765
No 189
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=23.41 E-value=87 Score=28.91 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=25.8
Q ss_pred CCcceEEEEcCccHHHHH-HHHHHhh-cCCCeEEEEcCCc
Q 013271 177 DRRCTFVALGGGVIGDMC-GYAAASY-LRGVSFIQIPTTV 214 (446)
Q Consensus 177 dr~~~IIAiGGGsv~D~a-K~iAa~~-~~g~p~i~IPTTl 214 (446)
-++..+|++|.||+.... +.++... ..++.+..+||+.
T Consensus 18 V~~gmvvGlGTGSTv~~~I~~L~~~~~~~~l~i~~v~tS~ 57 (226)
T 3ixq_A 18 VKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSF 57 (226)
T ss_dssp CCTTCEEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESSH
T ss_pred CCCCCEEEeCcHHHHHHHHHHHHHhhhhcCCeeEeecccH
Confidence 356699999999987743 3333222 2367789999984
No 190
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=23.15 E-value=1.7e+02 Score=23.46 Aligned_cols=76 Identities=8% Similarity=0.053 Sum_probs=44.3
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
..+++||.|... ..+.+...|...| +.+ ..+. + ..++.+.+.+..+| +||- +++....
T Consensus 3 ~~~ILivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~a~~~l~~~~~d---liild~~l~~~~g~ 63 (155)
T 1qkk_A 3 APSVFLIDDDRD---LRKAMQQTLELAG--FTV--SSFA------S---ATEALAGLSADFAG---IVISDIRMPGMDGL 63 (155)
T ss_dssp -CEEEEECSCHH---HHHHHHHHHHHTT--CEE--EEES------C---HHHHHHTCCTTCCS---EEEEESCCSSSCHH
T ss_pred CCEEEEEeCCHH---HHHHHHHHHHHcC--cEE--EEEC------C---HHHHHHHHHhCCCC---EEEEeCCCCCCCHH
Confidence 356788766643 4556666777777 443 2332 2 23344444455565 5553 4566778
Q ss_pred HHHHHHHHhhcCCCeEEEE
Q 013271 192 DMCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~I 210 (446)
++++.+... ...+|+|.+
T Consensus 64 ~~~~~l~~~-~~~~pii~l 81 (155)
T 1qkk_A 64 ALFRKILAL-DPDLPMILV 81 (155)
T ss_dssp HHHHHHHHH-CTTSCEEEE
T ss_pred HHHHHHHhh-CCCCCEEEE
Confidence 888877543 356888877
No 191
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.09 E-value=2.6e+02 Score=21.43 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=45.4
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHH-------cCCCCcceEEE---
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE-------SRLDRRCTFVA--- 184 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~-------~~~dr~~~IIA--- 184 (446)
..+++||.|... ..+.+...|...|..+.+ ..+. + ..++.+.+.+ ..+| +||-
T Consensus 2 ~~~ilivdd~~~---~~~~l~~~L~~~~~~~~v--~~~~------~---~~~a~~~l~~~~~~~~~~~~d---lvi~d~~ 64 (140)
T 1k68_A 2 HKKIFLVEDNKA---DIRLIQEALANSTVPHEV--VTVR------D---GMEAMAYLRQEGEYANASRPD---LILLXLN 64 (140)
T ss_dssp CCEEEEECCCHH---HHHHHHHHHHTCSSCCEE--EEEC------S---HHHHHHHHTTCGGGGSCCCCS---EEEECSS
T ss_pred CCeEEEEeCCHH---HHHHHHHHHHhcCCCceE--EEEC------C---HHHHHHHHHcccccccCCCCc---EEEEecC
Confidence 357888876543 456667778777731122 3332 2 3344444444 4455 6653
Q ss_pred EcCccHHHHHHHHHHhh-cCCCeEEEEc
Q 013271 185 LGGGVIGDMCGYAAASY-LRGVSFIQIP 211 (446)
Q Consensus 185 iGGGsv~D~aK~iAa~~-~~g~p~i~IP 211 (446)
+.+..-.++++.+.... ...+|+|.+-
T Consensus 65 ~~~~~g~~~~~~l~~~~~~~~~pii~ls 92 (140)
T 1k68_A 65 LPKKDGREVLAEIKSDPTLKRIPVVVLS 92 (140)
T ss_dssp CSSSCHHHHHHHHHHSTTGGGSCEEEEE
T ss_pred CCcccHHHHHHHHHcCcccccccEEEEe
Confidence 45667788888775432 1567887773
No 192
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=23.04 E-value=2.5e+02 Score=21.26 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=44.6
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 192 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~D 192 (446)
.+++||.|... ..+.+...|...| +.+ .... +. .++++.+.+..+| +||- +.|..-.+
T Consensus 4 ~~ilivdd~~~---~~~~l~~~l~~~~--~~v--~~~~------~~---~~a~~~~~~~~~d---lvl~D~~l~~~~g~~ 64 (124)
T 1srr_A 4 EKILIVDDQSG---IRILLNEVFNKEG--YQT--FQAA------NG---LQALDIVTKERPD---LVLLDMKIPGMDGIE 64 (124)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHTTT--CEE--EEES------SH---HHHHHHHHHHCCS---EEEEESCCTTCCHHH
T ss_pred ceEEEEeCCHH---HHHHHHHHHHHCC--cEE--EEeC------CH---HHHHHHHhccCCC---EEEEecCCCCCCHHH
Confidence 46777766533 4566666777777 443 2322 22 3344444556677 6653 46677788
Q ss_pred HHHHHHHhhcCCCeEEEE
Q 013271 193 MCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 193 ~aK~iAa~~~~g~p~i~I 210 (446)
+++.+... ...+|+|.+
T Consensus 65 ~~~~l~~~-~~~~~ii~~ 81 (124)
T 1srr_A 65 ILKRMKVI-DENIRVIIM 81 (124)
T ss_dssp HHHHHHHH-CTTCEEEEE
T ss_pred HHHHHHHh-CCCCCEEEE
Confidence 88877533 456888776
No 193
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=22.75 E-value=4.7e+02 Score=24.41 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCcceE-EEEcCccHHHHHHHHHHhhc-----CCCeEEEEcCC
Q 013271 157 NYKNMDTLMKVFDKAIESRLDRRCTF-VALGGGVIGDMCGYAAASYL-----RGVSFIQIPTT 213 (446)
Q Consensus 157 ~~~t~~~v~~~~~~~~~~~~dr~~~I-IAiGGGsv~D~aK~iAa~~~-----~g~p~i~IPTT 213 (446)
..|+.+.+.+.++.+.+.|+| ++ ||+=--+.-|......++.. ...|+|++...
T Consensus 171 ~tP~~~el~~~~~~~~~~GaD---IvKia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG 230 (276)
T 3o1n_A 171 KTPAAEEIVQRLRKMQELGAD---IPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMS 230 (276)
T ss_dssp CCCCHHHHHHHHHHHHHTTCS---EEEEEECCSSHHHHHHHHHHHHHHHHHTCCSCCEEEECS
T ss_pred CCcCHHHHHHHHHHHHHcCCC---EEEEEecCCChHHHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 356788999999999999998 43 78888888898887765422 57899999766
No 194
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=22.74 E-value=5.3e+02 Score=24.99 Aligned_cols=48 Identities=6% Similarity=0.069 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
...+.++.+.+++.++| +|+.+|+-... ++...+ +...++|++.+-..
T Consensus 100 ~~~~~~l~~~l~~~kPD---~Vi~~gd~~~~-l~~~la-A~~~~IPv~h~~ag 147 (403)
T 3ot5_A 100 SRVMNGINEVIAAENPD---IVLVHGDTTTS-FAAGLA-TFYQQKMLGHVEAG 147 (403)
T ss_dssp HHHHHHHHHHHHHHCCS---EEEEETTCHHH-HHHHHH-HHHTTCEEEEESCC
T ss_pred HHHHHHHHHHHHHcCCC---EEEEECCchhH-HHHHHH-HHHhCCCEEEEECC
Confidence 45677778888889888 99999873332 332233 34678999887643
No 195
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=22.45 E-value=3.9e+02 Score=23.38 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
++++.-+..+.+ +.++| +||+=|| .|.++- -..++|+|.||.|
T Consensus 37 ~l~~~v~~a~~~-~~~~d---VIISRGg-----ta~~lr--~~~~iPVV~I~~s 79 (196)
T 2q5c_A 37 SLTRASKIAFGL-QDEVD---AIISRGA-----TSDYIK--KSVSIPSISIKVT 79 (196)
T ss_dssp CHHHHHHHHHHH-TTTCS---EEEEEHH-----HHHHHH--TTCSSCEEEECCC
T ss_pred CHHHHHHHHHHh-cCCCe---EEEECCh-----HHHHHH--HhCCCCEEEEcCC
Confidence 667666666666 77888 9998665 234442 2357999999998
No 196
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.40 E-value=2.8e+02 Score=21.65 Aligned_cols=75 Identities=12% Similarity=0.014 Sum_probs=44.4
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 192 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~D 192 (446)
.+++||.|.... .+.+...|...| +.+ ..+. + ..++++.+.+..+| +||- +.|..-.+
T Consensus 5 ~~ILivdd~~~~---~~~l~~~L~~~g--~~v--~~~~------~---~~~a~~~l~~~~~d---lvllD~~l~~~~g~~ 65 (137)
T 3cfy_A 5 PRVLLVEDSTSL---AILYKQYVKDEP--YDI--FHVE------T---GRDAIQFIERSKPQ---LIILDLKLPDMSGED 65 (137)
T ss_dssp CEEEEECSCTTH---HHHHHHHTTTSS--SEE--EEES------S---HHHHHHHHHHHCCS---EEEECSBCSSSBHHH
T ss_pred ceEEEEeCCHHH---HHHHHHHHHhcC--ceE--EEeC------C---HHHHHHHHHhcCCC---EEEEecCCCCCCHHH
Confidence 378888776543 455666677666 443 2332 2 23344455566677 6653 46777788
Q ss_pred HHHHHHHhhcCCCeEEEE
Q 013271 193 MCGYAAASYLRGVSFIQI 210 (446)
Q Consensus 193 ~aK~iAa~~~~g~p~i~I 210 (446)
+++.+... ...+|+|.+
T Consensus 66 l~~~l~~~-~~~~~ii~l 82 (137)
T 3cfy_A 66 VLDWINQN-DIPTSVIIA 82 (137)
T ss_dssp HHHHHHHT-TCCCEEEEE
T ss_pred HHHHHHhc-CCCCCEEEE
Confidence 88877532 345777766
No 197
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=22.20 E-value=3.1e+02 Score=24.89 Aligned_cols=85 Identities=15% Similarity=0.051 Sum_probs=51.4
Q ss_pred CEEEEEECCC---chhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 116 KKVLVVTNNT---VAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 116 k~vliVtd~~---v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
+.+-+|.... .+..+.+.+.+.+.+.| +.+.. +... .+.+.-.+.++.+...++| .||-.+....-+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~~--~~~~---~~~~~~~~~~~~l~~~~vd---giI~~~~~~~~~ 85 (303)
T 3kke_A 16 GTIGLIVPDVNNAVFADMFSGVQMAASGHS--TDVLL--GQID---APPRGTQQLSRLVSEGRVD---GVLLQRREDFDD 85 (303)
T ss_dssp -CEEEEESCTTSTTHHHHHHHHHHHHHHTT--CCEEE--EECC---STTHHHHHHHHHHHSCSSS---EEEECCCTTCCH
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCC--CEEEE--EeCC---CChHHHHHHHHHHHhCCCc---EEEEecCCCCcH
Confidence 4455554432 23346777888888998 44432 2221 1334556777888888998 888887654433
Q ss_pred -HHHHHHHhhcCCCeEEEEcCCc
Q 013271 193 -MCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 193 -~aK~iAa~~~~g~p~i~IPTTl 214 (446)
..+. ... ++|+|.+-...
T Consensus 86 ~~~~~---l~~-~iPvV~i~~~~ 104 (303)
T 3kke_A 86 DMLAA---VLE-GVPAVTINSRV 104 (303)
T ss_dssp HHHHH---HHT-TSCEEEESCCC
T ss_pred HHHHH---HhC-CCCEEEECCcC
Confidence 2222 234 99999997663
No 198
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=22.08 E-value=2.8e+02 Score=21.44 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=44.1
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhc-CCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTR-GNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVI 190 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~-~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv 190 (446)
..+++||.|... ..+.+...|.+ .| +.+ +..+. + ..++.+.+.+..+| +||- +.+...
T Consensus 8 ~~~iLivdd~~~---~~~~l~~~L~~~~~--~~~-v~~~~------~---~~~a~~~l~~~~~d---lii~d~~l~~~~g 69 (143)
T 3cnb_A 8 DFSILIIEDDKE---FADMLTQFLENLFP--YAK-IKIAY------N---PFDAGDLLHTVKPD---VVMLDLMMVGMDG 69 (143)
T ss_dssp -CEEEEECSCHH---HHHHHHHHHHHHCT--TCE-EEEEC------S---HHHHHHHHHHTCCS---EEEEETTCTTSCH
T ss_pred CceEEEEECCHH---HHHHHHHHHHhccC--ccE-EEEEC------C---HHHHHHHHHhcCCC---EEEEecccCCCcH
Confidence 457888766543 34556666766 66 341 12222 2 23444555666676 5553 356677
Q ss_pred HHHHHHHHHh-hcCCCeEEEE
Q 013271 191 GDMCGYAAAS-YLRGVSFIQI 210 (446)
Q Consensus 191 ~D~aK~iAa~-~~~g~p~i~I 210 (446)
.++++.+... ....+|+|.+
T Consensus 70 ~~~~~~l~~~~~~~~~~ii~~ 90 (143)
T 3cnb_A 70 FSICHRIKSTPATANIIVIAM 90 (143)
T ss_dssp HHHHHHHHTSTTTTTSEEEEE
T ss_pred HHHHHHHHhCccccCCcEEEE
Confidence 8888877432 2356788877
No 199
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=22.08 E-value=2.8e+02 Score=21.60 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=45.4
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHH-cCCCCcceEEE-E---cCcc
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVA-L---GGGV 189 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~-~~~dr~~~IIA-i---GGGs 189 (446)
..+++||.|... ..+.+...|.+.| +.+. .+. + ..++++.+.+ ..+| +||. + +|..
T Consensus 5 ~~~ilivdd~~~---~~~~l~~~L~~~g--~~v~--~~~------~---~~~a~~~l~~~~~~d---lvi~D~~l~~~~~ 65 (140)
T 3h5i_A 5 DKKILIVEDSKF---QAKTIANILNKYG--YTVE--IAL------T---GEAAVEKVSGGWYPD---LILMDIELGEGMD 65 (140)
T ss_dssp -CEEEEECSCHH---HHHHHHHHHHHTT--CEEE--EES------S---HHHHHHHHHTTCCCS---EEEEESSCSSSCC
T ss_pred CcEEEEEeCCHH---HHHHHHHHHHHcC--CEEE--Eec------C---hHHHHHHHhcCCCCC---EEEEeccCCCCCC
Confidence 467888877543 3556666777777 4432 332 2 2334444454 4566 5553 2 3578
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcC
Q 013271 190 IGDMCGYAAASYLRGVSFIQIPT 212 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p~i~IPT 212 (446)
-.++++.+.. ...+|+|.+-.
T Consensus 66 g~~~~~~l~~--~~~~~ii~ls~ 86 (140)
T 3h5i_A 66 GVQTALAIQQ--ISELPVVFLTA 86 (140)
T ss_dssp HHHHHHHHHH--HCCCCEEEEES
T ss_pred HHHHHHHHHh--CCCCCEEEEEC
Confidence 8899988753 26788877743
No 200
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=21.98 E-value=70 Score=27.81 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=50.5
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHH----HHHHHHHHHHcCCCCcceEEEEcC-cc
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDT----LMKVFDKAIESRLDRRCTFVALGG-GV 189 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~----v~~~~~~~~~~~~dr~~~IIAiGG-Gs 189 (446)
.+|++|+.-+++...=.-...+.|...| +++..+-..++.+-.+... .+..++.+....+| .||-.|| +.
T Consensus 5 ~kkv~ill~~g~~~~e~~~~~~~l~~ag--~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D---~livpGG~~~ 79 (190)
T 4e08_A 5 SKSALVILAPGAEEMEFIIAADVLRRAG--IKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFD---VVVLPGGLGG 79 (190)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTT--CEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCS---EEEECCCHHH
T ss_pred CcEEEEEECCCchHHHHHHHHHHHHHCC--CEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCC---EEEECCCChH
Confidence 4677777666666653344556777888 5665444332122111000 00001111112345 8887787 33
Q ss_pred HHH------HHHHHHHhhcCCCeEEEEcCCc
Q 013271 190 IGD------MCGYAAASYLRGVSFIQIPTTV 214 (446)
Q Consensus 190 v~D------~aK~iAa~~~~g~p~i~IPTTl 214 (446)
.-+ +.+++...+.++.++.+|.|..
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~ 110 (190)
T 4e08_A 80 SNAMGESSLVGDLLRSQESGGGLIAAICAAP 110 (190)
T ss_dssp HHHHHHCHHHHHHHHHHHHTTCEEEEETTTH
T ss_pred HHHhhhCHHHHHHHHHHHHCCCEEEEECHHH
Confidence 333 3455555678999999999874
No 201
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=21.96 E-value=1.4e+02 Score=25.64 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCCeeEEE-EEeCCCCCCCcHHHHHHHHHHHHHc-CCCCcceEEEEcCccHH--HHHHHH
Q 013271 130 YLDKVTDALTRGNPNVSVEN-VILPDGENYKNMDTLMKVFDKAIES-RLDRRCTFVALGGGVIG--DMCGYA 197 (446)
Q Consensus 130 ~~~~v~~~L~~~gi~~~v~~-~i~~~ge~~~t~~~v~~~~~~~~~~-~~dr~~~IIAiGGGsv~--D~aK~i 197 (446)
-...+.+.|.+.| +++.. .++++ +.+.+.+.++.+.+. ++| +||--||=++. |+.+-+
T Consensus 22 n~~~l~~~l~~~G--~~v~~~~iv~D-----d~~~i~~~l~~~~~~~~~D---lVittGG~g~g~~D~t~ea 83 (164)
T 2is8_A 22 THLAIREVLAGGP--FEVAAYELVPD-----EPPMIKKVLRLWADREGLD---LILTNGGTGLAPRDRTPEA 83 (164)
T ss_dssp HHHHHHHHHTTSS--EEEEEEEEECS-----CHHHHHHHHHHHHHTSCCS---EEEEESCCSSSTTCCHHHH
T ss_pred hHHHHHHHHHHCC--CeEeEEEEcCC-----CHHHHHHHHHHHHhcCCCC---EEEEcCCCCCCCCCChHHH
Confidence 4566778888888 44433 34443 456777777766653 577 99999998776 666544
No 202
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=21.88 E-value=2.6e+02 Score=25.09 Aligned_cols=82 Identities=4% Similarity=0.114 Sum_probs=50.5
Q ss_pred CCEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 115 GKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
.+++-++..... +..+.+.+.+.+.+.| +.+ ..++.. +.+.+.-.+.++.+...++| .||-.+
T Consensus 10 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~-~~~~~~---~~~~~~~~~~~~~l~~~~vd---giIi~~----- 75 (277)
T 3hs3_A 10 SKMIGIIIPDLNNRFYAQIIDGIQEVIQKEG--YTA-LISFST---NSDVKKYQNAIINFENNNVD---GIITSA----- 75 (277)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTT--CEE-EEEECS---SCCHHHHHHHHHHHHHTTCS---EEEEEC-----
T ss_pred CCEEEEEeCCCCChhHHHHHHHHHHHHHHCC--CCE-EEEEeC---CCChHHHHHHHHHHHhCCCC---EEEEcc-----
Confidence 455666655422 2236677888888888 441 233332 22456666777888888999 888887
Q ss_pred HHHHHHHHhhcCCCeEEEEcCC
Q 013271 192 DMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~IPTT 213 (446)
+. +......++|+|.+-+.
T Consensus 76 ~~---~~~~~~~~iPvV~~~~~ 94 (277)
T 3hs3_A 76 FT---IPPNFHLNTPLVMYDSA 94 (277)
T ss_dssp CC---CCTTCCCSSCEEEESCC
T ss_pred hH---HHHHHhCCCCEEEEccc
Confidence 11 11123468999998665
No 203
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=21.77 E-value=2.5e+02 Score=22.63 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=48.3
Q ss_pred EEEEEE--CCCchhHH--HHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHHH
Q 013271 117 KVLVVT--NNTVAPLY--LDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGD 192 (446)
Q Consensus 117 ~vliVt--d~~v~~~~--~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D 192 (446)
+++.|| ..++.-.| .+.+.+.-++.|+++.|+..--.+.+..-|.+.+. .+| +||-.+...+-|
T Consensus 4 kivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~---------~AD---~VIia~d~~v~~ 71 (106)
T 2m1z_A 4 KIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVN---------IGE---VVIFAVDTKVRN 71 (106)
T ss_dssp EEEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHH---------HCS---EEEEEESSCCST
T ss_pred cEEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHh---------hCC---EEEEeccccccc
Confidence 566664 45555543 68888888899965555544322222222334433 235 566555555557
Q ss_pred HHHHHHHhhcCCCeEEEEcCC
Q 013271 193 MCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 193 ~aK~iAa~~~~g~p~i~IPTT 213 (446)
...|. |.|++.+|+.
T Consensus 72 ~~RF~------gk~v~~~~v~ 86 (106)
T 2m1z_A 72 KERFD------GKVVLEVPVS 86 (106)
T ss_dssp HHHHT------TSEEEEECTT
T ss_pred hhccC------CCcEEEEcHH
Confidence 88775 8999999987
No 204
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=21.44 E-value=2.6e+02 Score=21.69 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=44.8
Q ss_pred CCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHH-cCCCCcceEEE---EcCcc
Q 013271 114 QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVA---LGGGV 189 (446)
Q Consensus 114 ~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~-~~~dr~~~IIA---iGGGs 189 (446)
...+++||-|... ..+.+...|...| +.+ ..+. + ..++++.+.+ ..+| +||. +.+..
T Consensus 14 ~~~~ilivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~al~~l~~~~~~d---lvilD~~l~~~~ 74 (138)
T 2b4a_A 14 QPFRVTLVEDEPS---HATLIQYHLNQLG--AEV--TVHP------S---GSAFFQHRSQLSTCD---LLIVSDQLVDLS 74 (138)
T ss_dssp CCCEEEEECSCHH---HHHHHHHHHHHTT--CEE--EEES------S---HHHHHHTGGGGGSCS---EEEEETTCTTSC
T ss_pred CCCeEEEECCCHH---HHHHHHHHHHHcC--CEE--EEeC------C---HHHHHHHHHhCCCCC---EEEEeCCCCCCC
Confidence 3567777766543 3455666677777 443 2222 2 2344455555 5666 6653 45666
Q ss_pred HHHHHHHHHHhhcCCCeEEEEc
Q 013271 190 IGDMCGYAAASYLRGVSFIQIP 211 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p~i~IP 211 (446)
-.++++.+.. ....+|+|.+-
T Consensus 75 g~~~~~~l~~-~~~~~~ii~ls 95 (138)
T 2b4a_A 75 IFSLLDIVKE-QTKQPSVLILT 95 (138)
T ss_dssp HHHHHHHHTT-SSSCCEEEEEE
T ss_pred HHHHHHHHHh-hCCCCCEEEEE
Confidence 6777776643 23468888774
No 205
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=21.42 E-value=5.1e+02 Score=24.29 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=22.1
Q ss_pred cceEEEEcCccHHH-HHHHHHHhhcCCCeEEEEcCC
Q 013271 179 RCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 179 ~~~IIAiGGGsv~D-~aK~iAa~~~~g~p~i~IPTT 213 (446)
+.+|+++|||..+= +++++.. ....+++|.|...
T Consensus 183 d~vv~~vGtGGt~~Gi~~~lk~-~~~~~~vigVe~~ 217 (325)
T 1j0a_A 183 DSIVVAAGSGGTLAGLSLGLSI-LNEDIRPVGIAVG 217 (325)
T ss_dssp SEEEEEESSSHHHHHHHHHHHH-TTCCCEEEEEECS
T ss_pred CEEEEeCCchHhHHHHHHHHHh-cCCCceEEEEEec
Confidence 46899999877654 4554432 2356788888765
No 206
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=21.16 E-value=5e+02 Score=24.13 Aligned_cols=84 Identities=11% Similarity=0.055 Sum_probs=51.2
Q ss_pred CCEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 115 GKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
.+.+.++..... +..+.+.+.+.+.+.| +.+. ++.. +.+.+.-.+.++.+...++| .||-++....-
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~~~--~~~~---~~~~~~~~~~~~~l~~~~vd---GiI~~~~~~~~ 139 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQGG--LQLL--LGYT---AYSPEREEQLVETMLRRRPE---AMVLSYDGHTE 139 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHHTT--CEEE--EEEC---TTCHHHHHHHHHHHHHTCCS---EEEEECSCCCH
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHHCC--CEEE--EEeC---CCChHHHHHHHHHHHhCCCC---EEEEeCCCCCH
Confidence 345666654432 2235677888888888 4443 2222 12445566777888888998 88888765433
Q ss_pred HHHHHHHHhhcCCCeEEEEc
Q 013271 192 DMCGYAAASYLRGVSFIQIP 211 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~IP 211 (446)
+..+. ....++|+|.|-
T Consensus 140 ~~~~~---l~~~~iPvV~i~ 156 (355)
T 3e3m_A 140 QTIRL---LQRASIPIVEIW 156 (355)
T ss_dssp HHHHH---HHHCCSCEEEES
T ss_pred HHHHH---HHhCCCCEEEEC
Confidence 33322 235799999983
No 207
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=21.08 E-value=3.2e+02 Score=25.13 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHc------CCCCcceEEEEcC-ccHHHH
Q 013271 132 DKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES------RLDRRCTFVALGG-GVIGDM 193 (446)
Q Consensus 132 ~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~------~~dr~~~IIAiGG-Gsv~D~ 193 (446)
+.+.+.+++.++ + .+..+ .|+..+.+.+++.+.+. +++ -|+.+|+ |.-+|=
T Consensus 81 ~~~~~~~~~~~~--~--i~~~p----eKD~TD~ekAl~~~~~~~~~~~~~~~---~I~ilGa~GGR~DH 138 (247)
T 3s4y_A 81 PEVREYYATKGC--E--LISTP----DQDHTDFTKCLKMLQKKIEEKDLKVD---VIVTLGGLAGRFDQ 138 (247)
T ss_dssp HHHHHHHHHTTC--E--EEECC----CTTSCHHHHHHHHHHHHHHHTTCCCS---EEEEECCSSSSHHH
T ss_pred HHHHHHHHhcCC--E--EEECC----CCCcCHHHHHHHHHHHhhhhccCCCC---EEEEEecCCCchhH
Confidence 456666777663 2 23333 34556666777766553 565 6766665 335663
No 208
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=21.01 E-value=2.2e+02 Score=27.91 Aligned_cols=51 Identities=22% Similarity=0.220 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHHHHcCCCCcceEEEEcCc-cHHHHHHHHHHhhcCCCeEEEEcCCcCc
Q 013271 158 YKNMDTLMKVFDKAIESRLDRRCTFVALGGG-VIGDMCGYAAASYLRGVSFIQIPTTVMA 216 (446)
Q Consensus 158 ~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGG-sv~D~aK~iAa~~~~g~p~i~IPTTl~A 216 (446)
.|+++.+.++.+...+.++. |||-||= +.-|++|++++ |...+.+-|.+..
T Consensus 190 ~p~~~~i~~v~~~~~~~~iP----VIA~GGI~~~~di~kala~----GAd~V~vGs~~~~ 241 (361)
T 3khj_A 190 VPQITAIEKCSSVASKFGIP----IIADGGIRYSGDIGKALAV----GASSVMIGSILAG 241 (361)
T ss_dssp CCHHHHHHHHHHHHHHHTCC----EEEESCCCSHHHHHHHHHH----TCSEEEESTTTTT
T ss_pred CCcHHHHHHHHHHHhhcCCe----EEEECCCCCHHHHHHHHHc----CCCEEEEChhhhc
Confidence 36777777777766666775 8999984 79999998864 7889999988754
No 209
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=21.00 E-value=2.9e+02 Score=23.61 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=42.6
Q ss_pred EEEEECCCc---hhHHHHHHHHHHhcCCCCeeEE-EEEeCCCCCCCcHHHHHHHHHHHHH-cCCCCcceEEEEcCccHH-
Q 013271 118 VLVVTNNTV---APLYLDKVTDALTRGNPNVSVE-NVILPDGENYKNMDTLMKVFDKAIE-SRLDRRCTFVALGGGVIG- 191 (446)
Q Consensus 118 vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~-~~i~~~ge~~~t~~~v~~~~~~~~~-~~~dr~~~IIAiGGGsv~- 191 (446)
.+|.|+..+ .+.-...+.+.|.+.|. ++. ..++++ +.+.+.+.++.+.+ .++| +||--||=++.
T Consensus 17 ~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~--~v~~~~iv~D-----d~~~i~~~l~~~~~~~~~D---lVittGG~g~g~ 86 (169)
T 1y5e_A 17 KIVTISDTRTEETDKSGQLLHELLKEAGH--KVTSYEIVKD-----DKESIQQAVLAGYHKEDVD---VVLTNGGTGITK 86 (169)
T ss_dssp EEEEECSSCCTTTCHHHHHHHHHHHHHTC--EEEEEEEECS-----SHHHHHHHHHHHHTCTTCS---EEEEECCCSSST
T ss_pred EEEEEcCccCeeccChHHHHHHHHHHCCC--eEeEEEEeCC-----CHHHHHHHHHHHHhcCCCC---EEEEcCCCCCCC
Confidence 344444433 33356667778888884 443 334443 45667777666554 3566 99999998776
Q ss_pred -HHHHHH
Q 013271 192 -DMCGYA 197 (446)
Q Consensus 192 -D~aK~i 197 (446)
|+.+-+
T Consensus 87 ~D~t~ea 93 (169)
T 1y5e_A 87 RDVTIEA 93 (169)
T ss_dssp TCCHHHH
T ss_pred CCCcHHH
Confidence 666544
No 210
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=20.84 E-value=2.7e+02 Score=20.89 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=43.6
Q ss_pred CEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHHH
Q 013271 116 KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIGD 192 (446)
Q Consensus 116 k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~D 192 (446)
++++||.|... ..+.+...|...| +.+ .... +. .++.+.+.+..+| +||- +.+..-.+
T Consensus 2 ~~ilivdd~~~---~~~~l~~~L~~~~--~~v--~~~~------~~---~~a~~~~~~~~~d---lvi~D~~l~~~~g~~ 62 (124)
T 1mb3_A 2 KKVLIVEDNEL---NMKLFHDLLEAQG--YET--LQTR------EG---LSALSIARENKPD---LILMDIQLPEISGLE 62 (124)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT--CEE--EEES------CH---HHHHHHHHHHCCS---EEEEESBCSSSBHHH
T ss_pred cEEEEEcCCHH---HHHHHHHHHHHcC--cEE--EEeC------CH---HHHHHHHhcCCCC---EEEEeCCCCCCCHHH
Confidence 46777766543 3455666677777 443 2222 22 2344445556676 5552 45667788
Q ss_pred HHHHHHHhh-cCCCeEEEE
Q 013271 193 MCGYAAASY-LRGVSFIQI 210 (446)
Q Consensus 193 ~aK~iAa~~-~~g~p~i~I 210 (446)
+++.+.... ...+|+|.+
T Consensus 63 ~~~~l~~~~~~~~~~ii~~ 81 (124)
T 1mb3_A 63 VTKWLKEDDDLAHIPVVAV 81 (124)
T ss_dssp HHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHcCccccCCcEEEE
Confidence 888774321 246788777
No 211
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=20.80 E-value=4.4e+02 Score=23.34 Aligned_cols=87 Identities=7% Similarity=0.109 Sum_probs=51.0
Q ss_pred CCEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEEEcCccHH
Q 013271 115 GKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~ 191 (446)
.+++-++....- +..+.+.+.+.+++.| +.+. ++.. ..+.+...+.++.+...++| .||-.+....-
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g--~~~~--~~~~---~~~~~~~~~~~~~l~~~~vd---gii~~~~~~~~ 76 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKG--YTLI--LGNA---WNNLEKQRAYLSMMAQKRVD---GLLVMCSEYPE 76 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHT--CEEE--EEEC---TTCHHHHHHHHHHHHHTTCS---EEEEECSCCCH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcC--CeEE--EEcC---CCChHHHHHHHHHHHhCCCC---EEEEEeccCCH
Confidence 345666654322 2225666777788888 4443 2322 22446666677777888898 88887755322
Q ss_pred HHHHHHHHhhcCCCeEEEEcCC
Q 013271 192 DMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 192 D~aK~iAa~~~~g~p~i~IPTT 213 (446)
...+.+. -..++|+|.+-..
T Consensus 77 ~~~~~l~--~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 77 PLLAMLE--EYRHIPMVVMDWG 96 (289)
T ss_dssp HHHHHHH--HTTTSCEEEEECS
T ss_pred HHHHHHH--hccCCCEEEEccC
Confidence 2333332 1268999998765
No 212
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=20.78 E-value=5.4e+02 Score=24.32 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEEcCccHHH-HHHHHHHhhcCCCeEEEEcCC
Q 013271 162 DTLMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 162 ~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D-~aK~iAa~~~~g~p~i~IPTT 213 (446)
....++++++.+.+.+-+.+|+++|+|..+= +++++. .....+++|.|...
T Consensus 177 t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k-~~~~~~~vigVe~~ 228 (341)
T 1f2d_A 177 GFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMA-QYGRQDDVIAIDAS 228 (341)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHG-GGTCGGGEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHH-hcCCCceEEEEEec
Confidence 4456777776543323345889999887643 444332 12245667777654
No 213
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=20.69 E-value=3.4e+02 Score=22.31 Aligned_cols=59 Identities=7% Similarity=0.039 Sum_probs=34.4
Q ss_pred CCEEEEEECCCch-------hHHHHHHHHHHhcCCCCeeEEEEEeCCCCCC-CcHHHHHHHHHHHHHcCCC
Q 013271 115 GKKVLVVTNNTVA-------PLYLDKVTDALTRGNPNVSVENVILPDGENY-KNMDTLMKVFDKAIESRLD 177 (446)
Q Consensus 115 ~k~vliVtd~~v~-------~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~-~t~~~v~~~~~~~~~~~~d 177 (446)
+++++++-|+.+. ..|...+.+.|...+. .+.++ ..|... .+.+.+.++-+.+...++|
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~--~~~v~--n~g~~G~~~~~~~~~~~~~~~~~~pd 68 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQS--DIVLI--NASISGETSGGALRRLDALLEQYEPT 68 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTC--CEEEE--ECCCTTCCHHHHHHHHHHHHHHHCCS
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCC--cEEEE--ECCcCCccHHHHHHHHHHHHhhcCCC
Confidence 4678888887665 2378888888887764 33322 223332 3444455555555555666
No 214
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=20.63 E-value=2.7e+02 Score=24.17 Aligned_cols=88 Identities=8% Similarity=0.019 Sum_probs=52.0
Q ss_pred EEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcH-HHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHH
Q 013271 117 KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNM-DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCG 195 (446)
Q Consensus 117 ~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~-~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK 195 (446)
|+.|-+|..-.+ +.+.|.+.|++.| ++|..+-....++.-++ +...++.+.+.+..+|| .|+--|-|.=+-++
T Consensus 5 kIaigsDhaG~~-lK~~i~~~L~~~G--~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~d~--GIliCGTGiG~sia- 78 (162)
T 2vvp_A 5 RVYLGADHAGYE-LKQRIIEHLKQTG--HEPIDCGALRYDADDDYPAFCIAAATRTVADPGSL--GIVLGGSGNGEQIA- 78 (162)
T ss_dssp EEEEEECHHHHH-HHHHHHHHHHHTT--CEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCE--EEEEESSSHHHHHH-
T ss_pred EEEEEeCchhHH-HHHHHHHHHHHCC--CEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCCce--EEEEeCCcHHHHHH-
Confidence 567777765333 5788999999999 45533321222212233 55667777777777776 66666666555444
Q ss_pred HHHHhhcCCCeEEEEcCC
Q 013271 196 YAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 196 ~iAa~~~~g~p~i~IPTT 213 (446)
+--.+|+....+-.+
T Consensus 79 ---ANKv~GIRAAl~~d~ 93 (162)
T 2vvp_A 79 ---ANKVPGARCALAWSV 93 (162)
T ss_dssp ---HHTSTTCCEEECCSH
T ss_pred ---HhcCCCeEEEEeCCH
Confidence 233467776655444
No 215
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=20.41 E-value=5e+02 Score=23.79 Aligned_cols=88 Identities=6% Similarity=-0.103 Sum_probs=49.7
Q ss_pred CCEEEEEECCCc---hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcC--CCCcceEEEEcCcc
Q 013271 115 GKKVLVVTNNTV---APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESR--LDRRCTFVALGGGV 189 (446)
Q Consensus 115 ~k~vliVtd~~v---~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~--~dr~~~IIAiGGGs 189 (446)
.+++-++..... +..+.+-+.+.+++.| +++. ++.. +.+.+.-.+.++.+.+.+ +| .||..+...
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g--~~l~--~~~~---~~~~~~~~~~i~~l~~~~~~vd---giIi~~~~~ 74 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKSVG--LPYV--PLTT---EGSSEKGIADIRALLQKTGGNL---VLNVDPNDS 74 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHHT--CCEE--EEEC---TTCHHHHHHHHHHHHHHTTTCE---EEEECCSSH
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHHHcC--CEEE--EecC---CCCHHHHHHHHHHHHHCCCCCC---EEEEeCCCH
Confidence 345666654322 2225667777888888 4443 2222 123455556667777778 88 888776543
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCC
Q 013271 190 IGDMCGYAAASYLRGVSFIQIPTT 213 (446)
Q Consensus 190 v~D~aK~iAa~~~~g~p~i~IPTT 213 (446)
. +....+......++|+|.+-+.
T Consensus 75 ~-~~~~~~~~~~~~~iPvV~~~~~ 97 (332)
T 2rjo_A 75 A-DARVIVEACSKAGAYVTTIWNK 97 (332)
T ss_dssp H-HHHHHHHHHHHHTCEEEEESCC
T ss_pred H-HHHHHHHHHHHCCCeEEEECCC
Confidence 2 1112222222468999999765
No 216
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=20.30 E-value=4.6e+02 Score=23.33 Aligned_cols=83 Identities=10% Similarity=0.088 Sum_probs=44.2
Q ss_pred hHhhhcCCC--CEEEEEE----CCC-c--hhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHc-CC
Q 013271 107 DLLQKHVQG--KKVLVVT----NNT-V--APLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIES-RL 176 (446)
Q Consensus 107 ~~l~~~~~~--k~vliVt----d~~-v--~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~-~~ 176 (446)
+.+.+. +. +++.+++ +.. . ...-.+-+.+.+++.|+.+++..+...+.......+.+.+++ .+. .+
T Consensus 126 ~~l~~~-g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~ 201 (304)
T 3gbv_A 126 RMLMLL-AVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFF---REHPDV 201 (304)
T ss_dssp HHHHHH-STTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHH---HHCTTC
T ss_pred HHHHHH-hCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHH---HhCCCe
Confidence 445444 34 8898887 321 1 112345566778887765554433333222223334444433 333 35
Q ss_pred CCcceEEEEcCccHHHHHHHH
Q 013271 177 DRRCTFVALGGGVIGDMCGYA 197 (446)
Q Consensus 177 dr~~~IIAiGGGsv~D~aK~i 197 (446)
+ +|++.... .+-+.+++
T Consensus 202 ~---ai~~~~d~-a~g~~~al 218 (304)
T 3gbv_A 202 K---HGITFNSK-VYIIGEYL 218 (304)
T ss_dssp C---EEEESSSC-THHHHHHH
T ss_pred E---EEEEcCcc-hHHHHHHH
Confidence 5 99999887 66555544
No 217
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=20.17 E-value=3.2e+02 Score=21.51 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=44.7
Q ss_pred CCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceEEE---EcCccHH
Q 013271 115 GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVA---LGGGVIG 191 (446)
Q Consensus 115 ~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~IIA---iGGGsv~ 191 (446)
.-+++||-|... ..+.+...|++.| +.+ ..+. + .+++++.+.+..+| +||- +.|+.-.
T Consensus 14 ~~~iLivdd~~~---~~~~l~~~L~~~g--~~v--~~~~------~---~~~al~~~~~~~~d---lvl~D~~mp~~~g~ 74 (143)
T 3m6m_D 14 SMRMLVADDHEA---NRMVLQRLLEKAG--HKV--LCVN------G---AEQVLDAMAEEDYD---AVIVDLHMPGMNGL 74 (143)
T ss_dssp -CEEEEECSSHH---HHHHHHHHHHC----CEE--EEES------S---HHHHHHHHHHSCCS---EEEEESCCSSSCHH
T ss_pred cceEEEEeCCHH---HHHHHHHHHHHcC--CeE--EEeC------C---HHHHHHHHhcCCCC---EEEEeCCCCCCCHH
Confidence 346888866543 3455666777777 343 2332 2 23445555667777 6654 4677888
Q ss_pred HHHHHHHHhh---cCCCeEEEEc
Q 013271 192 DMCGYAAASY---LRGVSFIQIP 211 (446)
Q Consensus 192 D~aK~iAa~~---~~g~p~i~IP 211 (446)
++++.+-... .+.+|+|.+.
T Consensus 75 ~~~~~lr~~~~~~~~~~pii~~s 97 (143)
T 3m6m_D 75 DMLKQLRVMQASGMRYTPVVVLS 97 (143)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEE
T ss_pred HHHHHHHhchhccCCCCeEEEEe
Confidence 8888774322 2457777764
No 218
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=20.16 E-value=1.1e+02 Score=26.86 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=37.3
Q ss_pred CEEEEEE---CCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHH
Q 013271 116 KKVLVVT---NNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKA 171 (446)
Q Consensus 116 k~vliVt---d~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~ 171 (446)
..++++. |+.+-....++..+.|++.| ..+++.++++..+.=+.+.++.+.+++
T Consensus 152 ~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g--~~v~~~~ypg~gH~i~~~el~~i~~wL 208 (210)
T 4h0c_A 152 TPVFISTGNPDPHVPVSRVQESVTILEDMN--AAVSQVVYPGRPHTISGDEIQLVNNTI 208 (210)
T ss_dssp CEEEEEEEESCTTSCHHHHHHHHHHHHHTT--CEEEEEEEETCCSSCCHHHHHHHHHTT
T ss_pred CceEEEecCCCCccCHHHHHHHHHHHHHCC--CCeEEEEECCCCCCcCHHHHHHHHHHH
Confidence 3567764 34444447888889999999 467888888756655677777776554
No 219
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=20.12 E-value=4.6e+02 Score=23.64 Aligned_cols=80 Identities=10% Similarity=0.111 Sum_probs=46.1
Q ss_pred hhHhhhc-CCCCEEEEEECCCchh--HHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCCcceE
Q 013271 106 PDLLQKH-VQGKKVLVVTNNTVAP--LYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTF 182 (446)
Q Consensus 106 ~~~l~~~-~~~k~vliVtd~~v~~--~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~~~v~~~~~~~~~~~~dr~~~I 182 (446)
-+++.+. .+.+|+.+++++.... .-.+.+++.+++.|+ ++...... +.+...+.++.+. .++| +|
T Consensus 123 ~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi--~~~~~~~~------~~~~~~~~~~~l~-~~~d---ai 190 (295)
T 3lft_A 123 VELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGL--TVETFAVP------STNEIASTVTVMT-SKVD---AI 190 (295)
T ss_dssp HHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTC--EEEEEEES------SGGGHHHHHHHHT-TTCS---EE
T ss_pred HHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCC--EEEEEecC------CHHHHHHHHHHHH-hcCC---EE
Confidence 3455443 2468999999875432 235667788888885 33322222 1234445555544 2455 99
Q ss_pred EEEcCccHHHHHHHH
Q 013271 183 VALGGGVIGDMCGYA 197 (446)
Q Consensus 183 IAiGGGsv~D~aK~i 197 (446)
++......+...+.+
T Consensus 191 ~~~~D~~a~g~~~~l 205 (295)
T 3lft_A 191 WVPIDNTIASGFPTV 205 (295)
T ss_dssp EECSCHHHHHTHHHH
T ss_pred EECCchhHHHHHHHH
Confidence 998776665544433
No 220
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=20.07 E-value=2.5e+02 Score=27.17 Aligned_cols=80 Identities=8% Similarity=0.099 Sum_probs=46.6
Q ss_pred hHhhhcCCCCEEEEEECCCc-hhH---HHHHHHHHHhcCCCCeeEEEEEe-CCCCCCCcHHHHHHHHHHHHHcCCCCcce
Q 013271 107 DLLQKHVQGKKVLVVTNNTV-APL---YLDKVTDALTRGNPNVSVENVIL-PDGENYKNMDTLMKVFDKAIESRLDRRCT 181 (446)
Q Consensus 107 ~~l~~~~~~k~vliVtd~~v-~~~---~~~~v~~~L~~~gi~~~v~~~i~-~~ge~~~t~~~v~~~~~~~~~~~~dr~~~ 181 (446)
++++.+ +.+++.+|++... ... ..+.+.+.+++.|+ .+....+ +.+. .+ ....+..++ .+++ +
T Consensus 147 ~~~~~~-~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~--~v~~~~~~~~~~--~d---~~~~l~~i~-~~~~---v 214 (441)
T 1jdp_A 147 ALFRHH-HWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGL--HTSIYSFDETKD--LD---LEDIVRNIQ-ASER---V 214 (441)
T ss_dssp HHHHHH-TCCEEEEEEECCSSSCHHHHHHHHHHHHHHHHTC--EEEEEEECTTSC--CC---HHHHHHHHH-HHCS---E
T ss_pred HHHHhc-CCcEEEEEEEcCCcccchHHHHHHHHHHHHhcCc--EEEEEEecCCcc--cC---HHHHHHHhh-cCCc---E
Confidence 345544 4688877765443 333 66888888988885 3333333 2222 23 455666666 6777 8
Q ss_pred EEEEcCccHHHHHHHHHHh
Q 013271 182 FVALGGGVIGDMCGYAAAS 200 (446)
Q Consensus 182 IIAiGGGsv~D~aK~iAa~ 200 (446)
||..|.+ -|+..++...
T Consensus 215 ii~~~~~--~~~~~~~~~~ 231 (441)
T 1jdp_A 215 VIMCASS--DTIRSIMLVA 231 (441)
T ss_dssp EEEESCH--HHHHHHHHHH
T ss_pred EEEecCH--HHHHHHHHHH
Confidence 8887765 3555554333
Done!