BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013272
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XD6|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 60 CSLEVLLGDVKVWNSGHYSRFYVSEKCVLELTKDGDLRLKGPNDRVGWLSGTSRQ-GVER 118
C+L + + VW SG + + C+L++ +DG+L + R W S T+RQ G
Sbjct: 29 CNLVLYDNNRAVWASGTNGK---ASNCILKMQRDGNLVIY-SGSRAMWASNTNRQDGNYY 84
Query: 119 LQILRTGNLVLVDVVNRVKWQS 140
L + R N+V+ D N W S
Sbjct: 85 LILQRDRNVVIYDNSNNAIWAS 106
>pdb|3M7H|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7H|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7J|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
pdb|3M7J|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
Length = 276
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 81 YVSEKCVLELTKDGDLRLKGPNDRVGWLSGTSRQGVERLQILRTGNLVLVDVVNRVKWQS 140
Y + L DG+L GPN W +GT +G R GNLV+ N V W S
Sbjct: 161 YGAGASKLVFQGDGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHS 220
>pdb|1XD5|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|B Chain B, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|C Chain C, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|D Chain D, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 60 CSLEVLLGDVKVWNSGHYSRFYVSEKCVLELTKDGDLRLKGPNDRVGWLSGTSRQ-GVER 118
C+L + + VW SG + + CVL++ DG+L + R W S T+RQ G
Sbjct: 29 CNLVLYDNNRAVWASGTNGK---ASGCVLKMQNDGNLVIYS-GSRAIWASNTNRQNGNYY 84
Query: 119 LQILRTGNLVLVDVVNRVKWQS 140
L + R N+V+ D N W +
Sbjct: 85 LILQRDRNVVIYDNSNNAIWAT 106
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 11 IQKGYKLTLAVPAEYSLGFIGRAFLIETDQIAPNFRAAVSVEAVNGK 57
++KG K+ LAV +Y G +GR E + PN + +E V+ K
Sbjct: 205 MKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWK 251
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 11 IQKGYKLTLAVPAEYSLGFIGRAFLIETDQIAPNFRAAVSVEAVNGK 57
++KG K+ LAV +Y G +GR E + PN + +E V+ K
Sbjct: 189 MKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWK 235
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 60 CSLEVLLGDVKVW--NSGHYSRFYVSEKCVLELTKDGDLRLKGPNDRVGWLSGTSRQGVE 117
C+L + D +W N+G SR C L + DG+L + P+++ W S T Q
Sbjct: 29 CNLVLYDVDKPIWATNTGGLSR-----SCFLSMQTDGNLVVYNPSNKPIWASNTGGQNGN 83
Query: 118 RLQILRTGNLVLVDVVNR 135
+ IL+ V++ +R
Sbjct: 84 YVCILQKDRNVVIYGTDR 101
>pdb|2D04|B Chain B, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|D Chain D, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|F Chain F, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|H Chain H, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 114
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 98 LKGPNDRVGWLSGTSRQGVE-RLQILRTGNLVLVDVVNRVKWQS 140
+K N R W S T R+G RL +L GNLV+ D N W S
Sbjct: 32 VKYQNGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 75
>pdb|2DPF|A Chain A, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|B Chain B, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|C Chain C, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|D Chain D, Crystal Structure Of Curculin1 Homodimer
Length = 115
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 98 LKGPNDRVGWLSGTSRQGVE-RLQILRTGNLVLVDVVNRVKWQS 140
+K N R W S T R+G RL +L GNLV+ D N W S
Sbjct: 33 VKYQNGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 76
>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Monomannoside
pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Dimannoside
Length = 110
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 107 WLSGTSRQGVE-RLQILRTGNLVLVDVVNRVKWQS 140
W S T G RL + GNLV+ D NRV WQ+
Sbjct: 42 WASNTGGLGSGCRLTLHNNGNLVIYDQSNRVIWQT 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,663,769
Number of Sequences: 62578
Number of extensions: 521230
Number of successful extensions: 771
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 13
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)