Query 013274
Match_columns 446
No_of_seqs 185 out of 2329
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:11:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4283 Transcription-coupled 100.0 5E-52 1.1E-56 355.8 30.1 361 1-426 1-365 (397)
2 KOG0271 Notchless-like WD40 re 100.0 3.5E-48 7.6E-53 342.8 24.2 355 39-424 111-479 (480)
3 KOG0286 G-protein beta subunit 100.0 4E-43 8.6E-48 301.0 30.4 291 36-424 48-343 (343)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-44 5.2E-49 322.4 21.7 283 41-425 173-459 (459)
5 KOG0279 G protein beta subunit 100.0 1.4E-38 3.1E-43 271.5 30.2 294 36-426 8-313 (315)
6 KOG0318 WD40 repeat stress pro 100.0 8.6E-38 1.9E-42 287.3 33.4 369 35-429 182-563 (603)
7 KOG0265 U5 snRNP-specific prot 100.0 3.8E-37 8.2E-42 265.2 27.8 289 36-422 40-334 (338)
8 KOG0263 Transcription initiati 100.0 3.6E-37 7.9E-42 296.5 19.9 259 44-429 379-652 (707)
9 KOG0296 Angio-associated migra 100.0 1.2E-34 2.6E-39 255.9 29.5 336 37-426 58-398 (399)
10 KOG0271 Notchless-like WD40 re 100.0 1.4E-35 3E-40 263.0 22.5 286 98-431 110-444 (480)
11 KOG0272 U4/U6 small nuclear ri 100.0 7E-36 1.5E-40 268.1 20.5 255 101-438 173-430 (459)
12 KOG0315 G-protein beta subunit 100.0 5.7E-34 1.2E-38 239.5 28.0 284 56-438 10-300 (311)
13 KOG0315 G-protein beta subunit 100.0 4.3E-34 9.3E-39 240.3 22.6 234 117-435 11-255 (311)
14 KOG0285 Pleiotropic regulator 100.0 1E-33 2.2E-38 249.3 24.1 290 34-428 142-441 (460)
15 KOG0278 Serine/threonine kinas 100.0 1.6E-34 3.6E-39 242.9 17.5 285 37-426 8-297 (334)
16 KOG0282 mRNA splicing factor [ 100.0 3.8E-34 8.2E-39 261.2 19.9 291 38-424 209-503 (503)
17 KOG0291 WD40-repeat-containing 100.0 3.9E-32 8.4E-37 259.7 32.7 300 38-437 140-521 (893)
18 cd00200 WD40 WD40 domain, foun 100.0 2.1E-31 4.5E-36 246.3 35.4 283 39-424 5-289 (289)
19 KOG0279 G protein beta subunit 100.0 2.1E-32 4.6E-37 233.8 25.9 247 37-384 57-313 (315)
20 KOG0263 Transcription initiati 100.0 2.5E-33 5.3E-38 270.1 22.8 207 36-341 444-651 (707)
21 KOG0295 WD40 repeat-containing 100.0 8.2E-33 1.8E-37 244.2 23.9 297 39-424 104-404 (406)
22 KOG0319 WD40-repeat-containing 100.0 3.8E-33 8.3E-38 266.2 23.6 251 37-426 359-619 (775)
23 KOG0291 WD40-repeat-containing 100.0 1.7E-32 3.7E-37 262.1 26.7 264 39-429 346-615 (893)
24 KOG0266 WD40 repeat-containing 100.0 8.7E-32 1.9E-36 265.0 32.2 290 41-426 157-454 (456)
25 KOG0273 Beta-transducin family 100.0 6.3E-32 1.4E-36 245.8 27.9 302 41-431 176-487 (524)
26 KOG0284 Polyadenylation factor 100.0 5.4E-33 1.2E-37 248.6 18.3 280 44-426 97-380 (464)
27 KOG0645 WD40 repeat protein [G 100.0 5.8E-31 1.2E-35 224.1 29.2 288 38-426 9-311 (312)
28 KOG0281 Beta-TrCP (transducin 100.0 5.1E-33 1.1E-37 243.9 16.4 281 42-438 196-489 (499)
29 PLN00181 protein SPA1-RELATED; 100.0 1.8E-30 3.9E-35 273.9 39.0 296 40-425 480-792 (793)
30 KOG0643 Translation initiation 100.0 1.2E-31 2.7E-36 227.7 23.8 286 38-426 5-317 (327)
31 KOG0273 Beta-transducin family 100.0 6.7E-31 1.5E-35 239.1 30.1 277 43-425 235-522 (524)
32 KOG0293 WD40 repeat-containing 100.0 3.3E-32 7.2E-37 243.7 21.1 292 37-428 218-515 (519)
33 KOG0285 Pleiotropic regulator 100.0 2.1E-31 4.5E-36 234.7 22.3 244 99-428 147-391 (460)
34 KOG0306 WD40-repeat-containing 100.0 8.9E-31 1.9E-35 250.3 28.2 292 100-427 370-665 (888)
35 KOG0277 Peroxisomal targeting 100.0 1.2E-31 2.5E-36 226.3 19.2 246 43-425 60-308 (311)
36 KOG0640 mRNA cleavage stimulat 100.0 1.2E-31 2.6E-36 232.1 19.5 299 39-424 108-424 (430)
37 KOG0268 Sof1-like rRNA process 100.0 4.4E-32 9.5E-37 239.4 13.5 324 14-445 37-364 (433)
38 KOG0319 WD40-repeat-containing 100.0 3.9E-30 8.5E-35 245.7 26.8 306 36-429 140-580 (775)
39 KOG0316 Conserved WD40 repeat- 100.0 9.4E-30 2E-34 212.5 24.5 283 38-426 12-299 (307)
40 KOG0286 G-protein beta subunit 100.0 9.8E-29 2.1E-33 212.6 29.1 254 98-437 50-314 (343)
41 KOG0318 WD40 repeat stress pro 100.0 1.5E-28 3.2E-33 226.7 32.1 298 37-433 53-357 (603)
42 KOG0306 WD40-repeat-containing 100.0 1E-28 2.2E-33 236.3 30.7 359 44-426 66-580 (888)
43 KOG0276 Vesicle coat complex C 100.0 8E-30 1.7E-34 239.2 22.5 250 39-431 9-262 (794)
44 KOG0275 Conserved WD40 repeat- 100.0 2.5E-30 5.5E-35 225.2 16.7 297 38-425 208-508 (508)
45 KOG0266 WD40 repeat-containing 100.0 4.8E-29 1.1E-33 245.5 27.4 246 102-429 158-412 (456)
46 KOG0295 WD40 repeat-containing 100.0 2E-29 4.4E-34 222.7 20.9 248 99-427 104-365 (406)
47 KOG0281 Beta-TrCP (transducin 100.0 1.8E-30 3.8E-35 228.0 13.8 233 103-429 197-431 (499)
48 KOG0274 Cdc4 and related F-box 100.0 2.3E-28 4.9E-33 240.4 30.0 278 42-432 207-488 (537)
49 KOG0313 Microtubule binding pr 100.0 2.1E-28 4.6E-33 217.4 23.9 280 41-425 103-417 (423)
50 KOG0283 WD40 repeat-containing 100.0 2.8E-28 6.1E-33 237.2 25.8 270 40-429 264-579 (712)
51 PLN00181 protein SPA1-RELATED; 100.0 3.1E-27 6.6E-32 249.4 33.6 246 99-428 479-740 (793)
52 KOG0292 Vesicle coat complex C 100.0 1E-27 2.2E-32 233.0 26.3 315 42-431 8-326 (1202)
53 KOG0316 Conserved WD40 repeat- 100.0 8.6E-28 1.9E-32 200.8 21.7 241 100-427 14-258 (307)
54 KOG0264 Nucleosome remodeling 100.0 7.3E-28 1.6E-32 219.0 21.7 273 41-428 122-406 (422)
55 KOG0284 Polyadenylation factor 100.0 5.3E-29 1.2E-33 223.0 13.8 247 34-338 129-379 (464)
56 KOG1407 WD40 repeat protein [F 100.0 5E-26 1.1E-30 193.1 27.4 285 39-426 16-311 (313)
57 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-25 7E-30 193.4 32.1 292 38-430 9-307 (311)
58 KOG1446 Histone H3 (Lys4) meth 100.0 5.8E-26 1.3E-30 198.1 27.3 252 103-440 14-277 (311)
59 PTZ00421 coronin; Provisional 100.0 1.4E-25 3.1E-30 220.4 33.5 173 38-223 70-247 (493)
60 KOG0274 Cdc4 and related F-box 100.0 1.2E-26 2.7E-31 228.2 25.7 272 39-423 245-519 (537)
61 KOG0265 U5 snRNP-specific prot 100.0 1.9E-26 4.1E-31 199.3 22.5 243 99-427 43-297 (338)
62 KOG0645 WD40 repeat protein [G 100.0 7.8E-26 1.7E-30 192.9 25.6 209 97-424 8-223 (312)
63 PTZ00421 coronin; Provisional 100.0 1.2E-25 2.7E-30 220.8 30.6 261 42-429 19-293 (493)
64 KOG0276 Vesicle coat complex C 100.0 4.9E-26 1.1E-30 213.9 25.9 202 43-341 55-259 (794)
65 KOG0282 mRNA splicing factor [ 100.0 9.7E-28 2.1E-32 219.4 14.1 251 98-431 209-467 (503)
66 KOG0288 WD40 repeat protein Ti 100.0 3.9E-27 8.5E-32 211.4 17.5 286 38-424 170-459 (459)
67 KOG2096 WD40 repeat protein [G 100.0 8.1E-26 1.7E-30 196.8 25.1 305 38-428 81-405 (420)
68 KOG0300 WD40 repeat-containing 100.0 2E-26 4.3E-31 200.5 20.8 292 39-430 144-480 (481)
69 KOG0289 mRNA splicing factor [ 99.9 1.9E-25 4.1E-30 201.8 27.2 278 44-425 220-505 (506)
70 KOG0310 Conserved WD40 repeat- 99.9 1E-25 2.2E-30 206.6 25.3 282 38-423 22-306 (487)
71 KOG0313 Microtubule binding pr 99.9 1.7E-26 3.6E-31 205.4 19.4 212 39-337 189-416 (423)
72 cd00200 WD40 WD40 domain, foun 99.9 1E-24 2.3E-29 201.3 31.4 245 100-429 6-252 (289)
73 KOG0277 Peroxisomal targeting 99.9 4.1E-26 8.8E-31 192.9 19.7 245 47-428 12-267 (311)
74 KOG0292 Vesicle coat complex C 99.9 2.4E-25 5.1E-30 216.7 27.6 256 28-384 36-321 (1202)
75 KOG1408 WD40 repeat protein [F 99.9 5.2E-26 1.1E-30 216.5 22.3 312 41-426 367-713 (1080)
76 KOG1332 Vesicle coat complex C 99.9 2.7E-26 5.9E-31 192.9 18.0 259 37-427 5-287 (299)
77 KOG0299 U3 snoRNP-associated p 99.9 3E-25 6.5E-30 202.0 25.5 300 37-424 136-454 (479)
78 PTZ00420 coronin; Provisional 99.9 1.2E-24 2.7E-29 214.8 31.7 172 38-222 69-249 (568)
79 KOG0973 Histone transcription 99.9 2.5E-25 5.4E-30 222.0 25.4 301 41-429 11-358 (942)
80 KOG0310 Conserved WD40 repeat- 99.9 1.3E-25 2.7E-30 205.9 20.7 238 104-426 27-268 (487)
81 KOG0305 Anaphase promoting com 99.9 7.1E-25 1.5E-29 208.3 26.1 272 49-428 183-463 (484)
82 KOG0772 Uncharacterized conser 99.9 6.5E-25 1.4E-29 202.2 24.5 299 39-428 163-490 (641)
83 KOG1539 WD repeat protein [Gen 99.9 2.1E-24 4.6E-29 209.2 29.0 365 46-436 162-617 (910)
84 PTZ00420 coronin; Provisional 99.9 2.2E-24 4.7E-29 213.1 29.8 228 62-428 50-295 (568)
85 KOG0308 Conserved WD40 repeat- 99.9 1.2E-25 2.5E-30 212.4 18.5 252 41-428 19-287 (735)
86 KOG0301 Phospholipase A2-activ 99.9 2.2E-24 4.7E-29 205.3 24.2 281 34-426 5-288 (745)
87 KOG0641 WD40 repeat protein [G 99.9 2.4E-22 5.2E-27 167.3 31.5 306 41-426 30-349 (350)
88 KOG0275 Conserved WD40 repeat- 99.9 3.3E-25 7.1E-30 193.4 15.1 249 101-434 211-475 (508)
89 KOG0296 Angio-associated migra 99.9 1.5E-23 3.3E-28 185.9 24.9 257 98-436 59-366 (399)
90 KOG0278 Serine/threonine kinas 99.9 1.2E-24 2.7E-29 183.5 16.7 203 41-342 98-300 (334)
91 KOG0643 Translation initiation 99.9 4E-24 8.7E-29 182.1 19.6 254 39-339 48-317 (327)
92 KOG4328 WD40 protein [Function 99.9 1.8E-23 3.9E-28 190.3 23.5 304 38-426 181-495 (498)
93 KOG0288 WD40 repeat protein Ti 99.9 4E-24 8.6E-29 192.2 18.8 242 38-381 214-458 (459)
94 KOG0264 Nucleosome remodeling 99.9 4.7E-24 1E-28 194.3 17.4 228 38-339 172-404 (422)
95 KOG0294 WD40 repeat-containing 99.9 1.8E-22 3.9E-27 175.9 25.1 242 98-428 38-283 (362)
96 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.5E-21 3.2E-26 183.0 33.3 278 57-436 2-290 (300)
97 KOG0301 Phospholipase A2-activ 99.9 2.1E-23 4.5E-28 198.7 20.3 237 98-426 9-249 (745)
98 KOG0269 WD40 repeat-containing 99.9 3.1E-23 6.8E-28 199.7 20.5 287 44-423 40-337 (839)
99 KOG0647 mRNA export protein (c 99.9 9.4E-22 2E-26 170.5 26.9 286 36-417 20-315 (347)
100 KOG0308 Conserved WD40 repeat- 99.9 4.3E-23 9.3E-28 195.2 19.0 296 39-436 69-404 (735)
101 KOG0639 Transducin-like enhanc 99.9 4E-23 8.7E-28 189.8 17.9 281 41-425 417-703 (705)
102 KOG2445 Nuclear pore complex c 99.9 8.7E-22 1.9E-26 171.1 25.1 278 36-426 6-318 (361)
103 KOG0289 mRNA splicing factor [ 99.9 4.5E-22 9.7E-27 180.1 23.8 168 38-228 256-426 (506)
104 KOG0646 WD40 repeat protein [G 99.9 4.6E-22 1E-26 181.7 24.1 279 57-429 8-310 (476)
105 KOG0647 mRNA export protein (c 99.9 6.1E-22 1.3E-26 171.7 23.0 240 101-426 25-281 (347)
106 KOG0321 WD40 repeat-containing 99.9 4.6E-22 1E-26 187.9 24.0 311 47-438 53-403 (720)
107 KOG0293 WD40 repeat-containing 99.9 1.4E-22 3.1E-27 182.2 19.1 255 98-438 219-482 (519)
108 KOG2106 Uncharacterized conser 99.9 4.2E-21 9.1E-26 176.9 28.4 300 41-425 285-625 (626)
109 KOG1274 WD40 repeat protein [G 99.9 2E-21 4.3E-26 190.7 27.2 250 40-427 10-263 (933)
110 KOG1036 Mitotic spindle checkp 99.9 1.4E-21 3E-26 170.1 23.2 240 101-429 11-265 (323)
111 KOG0299 U3 snoRNP-associated p 99.9 9.1E-22 2E-26 179.5 23.1 247 40-376 199-446 (479)
112 KOG0305 Anaphase promoting com 99.9 3.1E-22 6.6E-27 190.4 20.0 243 40-341 214-463 (484)
113 KOG1063 RNA polymerase II elon 99.9 4E-21 8.7E-26 183.2 27.3 322 38-426 49-391 (764)
114 KOG0267 Microtubule severing p 99.9 9E-24 1.9E-28 201.9 8.1 224 56-428 4-228 (825)
115 KOG1063 RNA polymerase II elon 99.9 3.2E-21 7E-26 183.8 25.2 380 39-428 187-650 (764)
116 KOG0641 WD40 repeat protein [G 99.9 2.2E-20 4.9E-25 155.6 26.8 207 40-340 86-304 (350)
117 KOG0267 Microtubule severing p 99.9 1.9E-23 4.1E-28 199.7 9.7 203 39-340 24-227 (825)
118 KOG0294 WD40 repeat-containing 99.9 1.8E-21 3.9E-26 169.7 20.5 240 39-341 39-283 (362)
119 KOG1407 WD40 repeat protein [F 99.9 8.1E-21 1.8E-25 161.6 22.3 236 37-376 58-293 (313)
120 KOG0973 Histone transcription 99.9 3.3E-21 7.2E-26 192.8 23.0 245 104-431 14-317 (942)
121 KOG0270 WD40 repeat-containing 99.9 1.9E-21 4.2E-26 176.6 19.3 208 56-342 192-407 (463)
122 KOG2055 WD40 repeat protein [G 99.9 9.2E-21 2E-25 173.0 23.6 288 43-426 213-512 (514)
123 KOG0283 WD40 repeat-containing 99.9 2E-21 4.4E-26 189.7 19.4 162 39-223 365-534 (712)
124 KOG0640 mRNA cleavage stimulat 99.9 1E-21 2.2E-26 170.7 15.3 209 99-429 108-338 (430)
125 KOG0302 Ribosome Assembly prot 99.9 2.5E-21 5.3E-26 172.5 17.9 225 40-429 148-381 (440)
126 KOG0772 Uncharacterized conser 99.9 2.4E-21 5.1E-26 178.9 17.3 212 100-428 164-396 (641)
127 KOG1036 Mitotic spindle checkp 99.9 2.5E-19 5.5E-24 156.1 26.4 278 37-416 7-294 (323)
128 KOG4283 Transcription-coupled 99.9 2.2E-20 4.8E-25 161.4 19.3 230 101-439 41-289 (397)
129 KOG0270 WD40 repeat-containing 99.9 1.6E-20 3.5E-25 170.7 18.0 165 39-222 239-405 (463)
130 KOG2096 WD40 repeat protein [G 99.9 5.2E-20 1.1E-24 160.8 18.8 209 99-426 82-308 (420)
131 KOG2048 WD40 repeat protein [G 99.9 1.5E-18 3.3E-23 165.5 30.1 284 44-425 26-318 (691)
132 KOG0300 WD40 repeat-containing 99.9 1.1E-19 2.4E-24 158.6 20.2 263 98-445 143-453 (481)
133 KOG2106 Uncharacterized conser 99.8 3.6E-18 7.9E-23 157.7 30.2 319 41-428 152-479 (626)
134 KOG0302 Ribosome Assembly prot 99.8 2.9E-20 6.3E-25 165.7 15.5 166 39-221 207-378 (440)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 8.5E-18 1.9E-22 157.5 33.0 268 39-406 27-300 (300)
136 KOG4227 WD40 repeat protein [G 99.8 2.6E-19 5.6E-24 160.4 20.9 304 37-427 50-388 (609)
137 KOG0268 Sof1-like rRNA process 99.8 2.4E-20 5.1E-25 165.5 14.1 222 36-339 102-345 (433)
138 KOG0639 Transducin-like enhanc 99.8 4.1E-20 8.9E-25 170.2 15.9 241 100-428 416-665 (705)
139 KOG1007 WD repeat protein TSSC 99.8 3.8E-19 8.2E-24 153.5 20.3 291 36-429 56-364 (370)
140 KOG0269 WD40 repeat-containing 99.8 5.5E-20 1.2E-24 177.5 16.7 162 45-223 89-252 (839)
141 KOG1273 WD40 repeat protein [G 99.8 1.2E-18 2.7E-23 152.1 23.3 282 46-426 26-322 (405)
142 KOG1332 Vesicle coat complex C 99.8 2.4E-19 5.1E-24 151.3 17.6 169 38-221 51-241 (299)
143 KOG0322 G-protein beta subunit 99.8 1.9E-19 4.1E-24 153.5 16.8 249 38-425 9-322 (323)
144 KOG4378 Nuclear protein COP1 [ 99.8 3.4E-19 7.3E-24 164.0 18.6 190 57-343 92-284 (673)
145 KOG0646 WD40 repeat protein [G 99.8 2.8E-19 6E-24 163.7 17.5 193 25-230 103-316 (476)
146 KOG0650 WD40 repeat nucleolar 99.8 2.1E-18 4.6E-23 162.2 21.4 286 36-424 393-733 (733)
147 KOG1408 WD40 repeat protein [F 99.8 5.9E-18 1.3E-22 162.1 24.0 288 47-428 328-673 (1080)
148 KOG1445 Tumor-specific antigen 99.8 4.9E-18 1.1E-22 160.6 23.1 167 38-221 74-248 (1012)
149 KOG1034 Transcriptional repres 99.8 6E-18 1.3E-22 148.6 21.5 168 98-339 33-211 (385)
150 KOG1009 Chromatin assembly com 99.8 2.3E-17 4.9E-22 148.8 24.5 170 41-223 10-197 (434)
151 KOG1539 WD repeat protein [Gen 99.8 2.2E-16 4.9E-21 154.0 32.9 372 39-429 110-526 (910)
152 KOG0321 WD40 repeat-containing 99.8 1.7E-18 3.6E-23 164.1 17.7 295 40-427 97-446 (720)
153 KOG2048 WD40 repeat protein [G 99.8 4E-17 8.7E-22 155.9 25.9 247 104-430 26-279 (691)
154 KOG1188 WD40 repeat protein [G 99.8 8.2E-18 1.8E-22 148.5 18.4 277 57-425 41-345 (376)
155 KOG0307 Vesicle coat complex C 99.8 1.3E-18 2.9E-23 175.1 15.2 255 44-431 65-332 (1049)
156 KOG2919 Guanine nucleotide-bin 99.8 2.1E-16 4.5E-21 138.7 23.0 290 46-426 52-367 (406)
157 KOG0642 Cell-cycle nuclear pro 99.8 1.1E-17 2.3E-22 156.7 14.8 265 39-428 290-563 (577)
158 KOG1517 Guanine nucleotide bin 99.8 1E-16 2.2E-21 159.8 21.2 264 43-431 1109-1386(1387)
159 KOG0303 Actin-binding protein 99.8 1.5E-16 3.2E-21 143.0 20.2 171 38-222 76-250 (472)
160 KOG1334 WD40 repeat protein [G 99.7 3.1E-17 6.7E-22 151.1 14.5 305 39-426 138-466 (559)
161 COG2319 FOG: WD40 repeat [Gene 99.7 2.5E-14 5.4E-19 139.4 35.7 292 38-429 60-362 (466)
162 KOG0303 Actin-binding protein 99.7 1.8E-16 4E-21 142.5 18.2 205 100-387 78-297 (472)
163 PRK11028 6-phosphogluconolacto 99.7 1E-14 2.2E-19 138.9 31.5 280 58-426 4-304 (330)
164 KOG0290 Conserved WD40 repeat- 99.7 1.8E-16 3.8E-21 137.2 16.0 267 44-445 45-344 (364)
165 COG2319 FOG: WD40 repeat [Gene 99.7 4.8E-14 1E-18 137.4 35.0 287 38-427 150-443 (466)
166 KOG0307 Vesicle coat complex C 99.7 3.6E-17 7.7E-22 164.9 12.8 212 40-342 113-330 (1049)
167 KOG0649 WD40 repeat protein [G 99.7 1.9E-14 4.1E-19 121.8 26.5 172 46-233 13-198 (325)
168 KOG2445 Nuclear pore complex c 99.7 1.7E-15 3.7E-20 132.2 20.7 236 39-339 55-318 (361)
169 KOG2919 Guanine nucleotide-bin 99.7 4.3E-15 9.3E-20 130.5 22.0 244 108-427 54-328 (406)
170 KOG1240 Protein kinase contain 99.7 4.4E-15 9.5E-20 150.5 24.6 173 39-224 1044-1228(1431)
171 KOG1274 WD40 repeat protein [G 99.7 7.8E-15 1.7E-19 144.9 25.8 200 42-340 55-263 (933)
172 KOG4378 Nuclear protein COP1 [ 99.7 3.6E-15 7.7E-20 137.8 20.2 269 60-426 6-280 (673)
173 KOG1034 Transcriptional repres 99.7 2.6E-15 5.5E-20 132.2 18.0 257 42-383 88-382 (385)
174 KOG4328 WD40 protein [Function 99.7 1.5E-15 3.3E-20 139.0 17.2 207 101-426 184-399 (498)
175 KOG1538 Uncharacterized conser 99.7 4.4E-15 9.5E-20 141.7 20.6 287 45-438 14-305 (1081)
176 KOG0644 Uncharacterized conser 99.7 1E-16 2.3E-21 156.1 9.5 236 100-428 187-428 (1113)
177 KOG2110 Uncharacterized conser 99.7 2.4E-13 5.1E-18 121.8 28.2 244 44-434 6-256 (391)
178 KOG0650 WD40 repeat nucleolar 99.7 6.5E-15 1.4E-19 139.0 19.1 242 100-425 397-679 (733)
179 KOG1310 WD40 repeat protein [G 99.7 2.6E-15 5.7E-20 140.3 16.3 167 37-222 44-232 (758)
180 KOG0290 Conserved WD40 repeat- 99.6 1.8E-14 3.9E-19 125.0 18.4 212 41-340 94-319 (364)
181 KOG1963 WD40 repeat protein [G 99.6 2.3E-13 5E-18 134.3 27.7 297 41-427 203-539 (792)
182 KOG1587 Cytoplasmic dynein int 99.6 4.6E-14 1E-18 138.6 22.2 253 43-428 242-518 (555)
183 KOG1007 WD repeat protein TSSC 99.6 4.6E-14 1E-18 122.3 19.3 166 41-222 121-290 (370)
184 KOG2055 WD40 repeat protein [G 99.6 7.2E-14 1.6E-18 128.3 20.1 159 44-222 258-418 (514)
185 KOG0771 Prolactin regulatory e 99.6 1.7E-14 3.6E-19 131.3 15.7 198 47-340 148-355 (398)
186 KOG0642 Cell-cycle nuclear pro 99.6 1.2E-14 2.6E-19 136.5 14.3 211 39-341 340-563 (577)
187 KOG0644 Uncharacterized conser 99.6 9.3E-15 2E-19 142.8 12.4 285 40-438 187-486 (1113)
188 PRK01742 tolB translocation pr 99.6 2.8E-13 6E-18 133.3 22.2 235 65-407 183-426 (429)
189 KOG1273 WD40 repeat protein [G 99.6 2.6E-13 5.5E-18 119.1 19.1 197 148-426 26-226 (405)
190 KOG1310 WD40 repeat protein [G 99.6 4E-14 8.8E-19 132.5 14.5 125 97-223 44-180 (758)
191 KOG1188 WD40 repeat protein [G 99.6 6.7E-14 1.5E-18 124.0 13.3 151 161-428 41-198 (376)
192 KOG1517 Guanine nucleotide bin 99.5 1E-12 2.2E-17 131.8 22.7 258 44-431 1065-1338(1387)
193 KOG1445 Tumor-specific antigen 99.5 2.2E-13 4.9E-18 129.5 16.4 145 63-223 600-752 (1012)
194 KOG1240 Protein kinase contain 99.5 1.4E-12 3.1E-17 132.7 22.2 252 98-429 1043-1337(1431)
195 KOG0771 Prolactin regulatory e 99.5 9.5E-13 2.1E-17 120.0 15.4 199 109-427 150-355 (398)
196 PRK01742 tolB translocation pr 99.5 4.6E-12 1E-16 124.7 21.6 210 125-425 183-400 (429)
197 PRK11028 6-phosphogluconolacto 99.5 9.6E-11 2.1E-15 111.6 30.1 273 42-404 33-327 (330)
198 KOG1963 WD40 repeat protein [G 99.5 4.2E-11 9.1E-16 118.6 26.8 294 50-439 23-335 (792)
199 KOG1524 WD40 repeat-containing 99.5 3.8E-12 8.3E-17 119.1 17.9 270 41-423 12-283 (737)
200 KOG1538 Uncharacterized conser 99.5 1.1E-12 2.4E-17 125.6 14.3 170 26-221 34-211 (1081)
201 KOG1009 Chromatin assembly com 99.5 1.1E-12 2.3E-17 118.9 13.3 157 105-341 15-197 (434)
202 KOG2321 WD40 repeat protein [G 99.5 3.7E-11 8.1E-16 113.6 23.8 288 41-423 49-340 (703)
203 KOG1587 Cytoplasmic dynein int 99.4 2.6E-11 5.7E-16 119.4 23.2 247 126-438 222-484 (555)
204 KOG0974 WD-repeat protein WDR6 99.4 5.2E-12 1.1E-16 127.0 18.3 194 115-432 98-294 (967)
205 KOG0649 WD40 repeat protein [G 99.4 3.6E-11 7.8E-16 102.2 20.3 229 110-426 17-274 (325)
206 KOG1272 WD40-repeat-containing 99.4 1.3E-12 2.9E-17 120.2 12.0 285 47-439 133-424 (545)
207 KOG2110 Uncharacterized conser 99.4 1.7E-10 3.7E-15 103.7 21.9 196 45-341 48-250 (391)
208 KOG2394 WD40 protein DMR-N9 [G 99.4 2.4E-11 5.1E-16 114.0 17.0 147 102-342 218-365 (636)
209 KOG2111 Uncharacterized conser 99.4 7.4E-10 1.6E-14 97.9 24.6 179 126-428 75-258 (346)
210 PRK03629 tolB translocation pr 99.4 4.6E-10 9.9E-15 110.4 26.4 217 102-406 197-427 (429)
211 PRK03629 tolB translocation pr 99.4 1.2E-09 2.7E-14 107.3 28.6 218 126-431 179-411 (429)
212 KOG4227 WD40 repeat protein [G 99.3 1.5E-10 3.2E-15 104.7 19.0 255 99-432 52-329 (609)
213 KOG1524 WD40 repeat-containing 99.3 5.6E-11 1.2E-15 111.5 16.2 142 57-222 76-217 (737)
214 KOG3881 Uncharacterized conser 99.3 3.6E-10 7.8E-15 102.4 20.7 195 162-427 117-321 (412)
215 KOG3881 Uncharacterized conser 99.3 1.7E-10 3.8E-15 104.4 18.5 206 43-342 105-323 (412)
216 KOG0322 G-protein beta subunit 99.3 1E-11 2.2E-16 106.7 10.0 166 42-220 149-322 (323)
217 PRK05137 tolB translocation pr 99.3 1.8E-09 3.9E-14 106.7 27.5 232 126-445 182-431 (435)
218 KOG1523 Actin-related protein 99.3 8.4E-10 1.8E-14 97.6 21.9 222 43-342 10-239 (361)
219 KOG4497 Uncharacterized conser 99.3 7.5E-11 1.6E-15 104.4 15.0 304 112-430 16-395 (447)
220 KOG1409 Uncharacterized conser 99.3 2.3E-10 5E-15 102.0 17.6 306 39-427 20-395 (404)
221 PRK04922 tolB translocation pr 99.3 1.1E-09 2.3E-14 108.2 24.5 218 101-406 201-432 (433)
222 PRK04922 tolB translocation pr 99.3 1.4E-09 3E-14 107.4 25.3 232 126-445 184-431 (433)
223 PRK02889 tolB translocation pr 99.3 1E-09 2.2E-14 107.9 24.2 220 101-407 193-425 (427)
224 PF08662 eIF2A: Eukaryotic tra 99.3 1.7E-10 3.8E-15 100.2 16.5 75 311-432 102-185 (194)
225 KOG4547 WD40 repeat-containing 99.3 1E-09 2.3E-14 104.5 20.5 189 114-426 3-220 (541)
226 KOG2111 Uncharacterized conser 99.2 1.1E-08 2.3E-13 90.7 24.8 158 103-340 94-257 (346)
227 PF02239 Cytochrom_D1: Cytochr 99.2 6.5E-08 1.4E-12 92.6 32.0 291 47-429 40-350 (369)
228 KOG1523 Actin-related protein 99.2 5.7E-10 1.2E-14 98.6 15.9 221 104-428 11-238 (361)
229 KOG1334 WD40 repeat protein [G 99.2 1.6E-10 3.4E-15 107.4 12.6 260 99-433 138-431 (559)
230 PF02239 Cytochrom_D1: Cytochr 99.2 2.6E-08 5.7E-13 95.3 28.0 274 58-428 8-304 (369)
231 PRK05137 tolB translocation pr 99.2 1.4E-08 3.1E-13 100.3 26.8 118 101-222 199-323 (435)
232 KOG2394 WD40 protein DMR-N9 [G 99.2 1.9E-10 4E-15 108.1 12.0 175 160-427 185-363 (636)
233 PRK02889 tolB translocation pr 99.1 2.4E-08 5.2E-13 98.3 25.3 206 126-418 176-392 (427)
234 KOG1272 WD40-repeat-containing 99.1 1.1E-10 2.5E-15 107.7 6.7 185 114-426 139-323 (545)
235 PF08662 eIF2A: Eukaryotic tra 99.1 2.4E-08 5.1E-13 86.9 19.8 112 103-222 59-180 (194)
236 PF10282 Lactonase: Lactonase, 99.1 2.5E-06 5.4E-11 81.6 34.9 249 108-431 41-329 (345)
237 TIGR02658 TTQ_MADH_Hv methylam 99.1 9.1E-07 2E-11 83.1 30.1 268 126-429 27-333 (352)
238 TIGR02800 propeller_TolB tol-p 99.0 1.5E-07 3.2E-12 92.8 26.4 117 102-222 188-311 (417)
239 KOG4547 WD40 repeat-containing 99.0 3.8E-08 8.2E-13 94.1 20.5 163 53-227 2-178 (541)
240 KOG2139 WD40 repeat protein [G 99.0 4.3E-08 9.3E-13 88.3 19.2 247 105-438 100-400 (445)
241 TIGR02800 propeller_TolB tol-p 99.0 1.3E-07 2.9E-12 93.1 25.0 216 125-428 169-399 (417)
242 KOG4190 Uncharacterized conser 99.0 2.1E-09 4.6E-14 101.4 11.1 174 39-227 731-912 (1034)
243 PRK04792 tolB translocation pr 99.0 2.4E-07 5.3E-12 91.6 26.1 216 103-406 217-446 (448)
244 PLN02919 haloacid dehalogenase 99.0 8.3E-07 1.8E-11 96.0 31.7 255 109-429 573-891 (1057)
245 KOG1409 Uncharacterized conser 99.0 1.4E-08 3E-13 90.9 14.4 247 100-431 21-275 (404)
246 KOG2139 WD40 repeat protein [G 99.0 4.6E-08 9.9E-13 88.1 17.6 194 162-426 112-309 (445)
247 PF00400 WD40: WD domain, G-be 99.0 1E-09 2.2E-14 68.5 5.1 39 386-424 1-39 (39)
248 KOG0974 WD-repeat protein WDR6 99.0 3E-08 6.5E-13 100.4 18.0 189 55-340 98-289 (967)
249 KOG0280 Uncharacterized conser 99.0 2E-07 4.3E-12 81.9 20.5 234 115-430 83-337 (339)
250 PRK00178 tolB translocation pr 99.0 6.5E-07 1.4E-11 88.6 27.2 215 127-429 180-409 (430)
251 PF10282 Lactonase: Lactonase, 98.9 1.8E-05 3.9E-10 75.7 35.0 273 46-404 39-345 (345)
252 PRK04792 tolB translocation pr 98.9 1.4E-06 3E-11 86.3 27.4 215 127-429 199-428 (448)
253 PRK00178 tolB translocation pr 98.9 6E-07 1.3E-11 88.8 24.6 217 102-406 197-427 (430)
254 KOG0280 Uncharacterized conser 98.9 1.2E-08 2.5E-13 89.5 9.8 162 39-218 161-330 (339)
255 KOG1354 Serine/threonine prote 98.9 8.3E-08 1.8E-12 86.0 14.9 171 44-221 85-301 (433)
256 KOG0309 Conserved WD40 repeat- 98.8 5.4E-09 1.2E-13 101.9 6.8 160 45-222 69-233 (1081)
257 PRK01029 tolB translocation pr 98.8 4.1E-06 8.9E-11 82.3 24.9 119 313-435 284-412 (428)
258 KOG1354 Serine/threonine prote 98.8 8.3E-07 1.8E-11 79.7 17.8 249 106-426 27-359 (433)
259 KOG4497 Uncharacterized conser 98.7 2E-05 4.2E-10 70.7 24.9 340 44-422 49-428 (447)
260 PLN02919 haloacid dehalogenase 98.7 3.3E-05 7.1E-10 83.9 31.6 277 48-388 572-892 (1057)
261 KOG1064 RAVE (regulator of V-A 98.7 9.4E-08 2E-12 101.8 11.1 155 104-341 2209-2368(2439)
262 KOG3914 WD repeat protein WDR4 98.7 4.5E-07 9.8E-12 83.0 13.3 152 114-343 72-227 (390)
263 TIGR03300 assembly_YfgL outer 98.6 5.6E-05 1.2E-09 73.4 28.5 269 56-429 65-341 (377)
264 KOG2315 Predicted translation 98.6 8E-06 1.7E-10 78.0 21.1 115 308-431 269-395 (566)
265 PF00400 WD40: WD domain, G-be 98.6 1.2E-07 2.7E-12 58.9 5.9 38 181-219 2-39 (39)
266 KOG0882 Cyclophilin-related pe 98.6 2E-06 4.4E-11 79.9 15.8 270 42-392 8-313 (558)
267 KOG4532 WD40-like repeat conta 98.6 1.6E-05 3.4E-10 69.3 20.0 147 57-223 85-235 (344)
268 PRK01029 tolB translocation pr 98.6 4.4E-05 9.6E-10 75.1 26.1 218 106-408 187-426 (428)
269 TIGR03300 assembly_YfgL outer 98.6 7.6E-05 1.6E-09 72.5 27.3 257 56-423 105-376 (377)
270 KOG3914 WD repeat protein WDR4 98.6 1.3E-06 2.7E-11 80.2 12.8 107 119-230 125-232 (390)
271 COG2706 3-carboxymuconate cycl 98.5 0.00072 1.6E-08 61.8 30.6 275 65-431 15-328 (346)
272 KOG2321 WD40 repeat protein [G 98.5 2.3E-06 4.9E-11 81.8 13.7 169 42-222 174-344 (703)
273 KOG1064 RAVE (regulator of V-A 98.5 8.5E-07 1.8E-11 94.8 11.4 156 40-222 2205-2367(2439)
274 KOG4714 Nucleoporin [Nuclear s 98.5 9.6E-07 2.1E-11 76.4 9.0 209 46-340 39-255 (319)
275 KOG4190 Uncharacterized conser 98.4 6.1E-07 1.3E-11 85.2 7.7 174 183-429 728-909 (1034)
276 KOG2041 WD40 repeat protein [G 98.4 7.6E-05 1.6E-09 73.5 21.1 171 41-222 12-187 (1189)
277 KOG4532 WD40-like repeat conta 98.4 7E-05 1.5E-09 65.4 18.3 228 116-418 84-324 (344)
278 PF13360 PQQ_2: PQQ-like domai 98.3 0.00018 3.9E-09 64.8 21.8 220 124-429 1-233 (238)
279 KOG1832 HIV-1 Vpr-binding prot 98.3 6.8E-07 1.5E-11 89.4 5.6 155 39-224 1097-1258(1516)
280 PRK04043 tolB translocation pr 98.3 0.00037 8E-09 68.2 23.8 109 106-218 190-304 (419)
281 COG2706 3-carboxymuconate cycl 98.3 0.00084 1.8E-08 61.4 23.9 233 125-425 15-273 (346)
282 COG5354 Uncharacterized protei 98.3 0.00041 8.8E-09 66.0 22.5 324 42-431 31-400 (561)
283 KOG2695 WD40 repeat protein [G 98.3 4.4E-06 9.6E-11 75.2 8.6 100 120-225 228-333 (425)
284 COG5170 CDC55 Serine/threonine 98.2 3.2E-05 6.9E-10 68.9 13.5 172 43-223 26-254 (460)
285 KOG2315 Predicted translation 98.2 0.00074 1.6E-08 65.0 23.6 191 17-225 138-348 (566)
286 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.0043 9.3E-08 58.6 28.7 255 51-392 53-338 (352)
287 KOG2695 WD40 repeat protein [G 98.2 4.9E-06 1.1E-10 74.9 8.3 149 58-229 226-384 (425)
288 COG4946 Uncharacterized protei 98.2 0.0019 4.1E-08 61.1 24.0 123 101-228 357-484 (668)
289 COG5170 CDC55 Serine/threonine 98.1 2.1E-05 4.6E-10 69.9 10.5 121 306-428 169-311 (460)
290 PRK04043 tolB translocation pr 98.1 0.0028 6.1E-08 62.1 26.2 111 312-431 235-362 (419)
291 PF15492 Nbas_N: Neuroblastoma 98.1 0.003 6.5E-08 56.2 23.4 149 49-213 3-170 (282)
292 PF08450 SGL: SMP-30/Gluconola 98.1 0.0072 1.6E-07 54.8 31.3 218 109-412 5-241 (246)
293 PF13360 PQQ_2: PQQ-like domai 98.1 0.0062 1.4E-07 54.7 25.5 106 115-227 35-146 (238)
294 KOG0309 Conserved WD40 repeat- 98.1 2.4E-05 5.1E-10 77.2 9.7 115 106-223 27-147 (1081)
295 KOG0882 Cyclophilin-related pe 98.0 4.4E-05 9.5E-10 71.3 10.8 220 101-430 7-235 (558)
296 KOG4714 Nucleoporin [Nuclear s 98.0 2.1E-05 4.6E-10 68.3 7.8 76 44-135 180-255 (319)
297 PF15492 Nbas_N: Neuroblastoma 98.0 0.011 2.4E-07 52.7 24.3 33 395-427 228-260 (282)
298 smart00320 WD40 WD40 repeats. 97.9 2.9E-05 6.4E-10 46.9 5.4 38 387-424 3-40 (40)
299 KOG1912 WD40 repeat protein [G 97.9 0.0028 6.1E-08 63.5 21.0 90 39-145 51-154 (1062)
300 PRK11138 outer membrane biogen 97.9 0.03 6.5E-07 54.7 29.5 103 116-225 120-227 (394)
301 COG4946 Uncharacterized protei 97.9 0.027 5.9E-07 53.6 29.6 118 306-428 356-479 (668)
302 KOG1275 PAB-dependent poly(A) 97.9 0.00044 9.5E-09 70.2 15.0 102 115-223 146-256 (1118)
303 KOG1275 PAB-dependent poly(A) 97.8 0.00027 5.8E-09 71.7 12.7 151 45-221 179-342 (1118)
304 KOG2066 Vacuolar assembly/sort 97.7 0.00043 9.3E-09 69.4 11.9 155 43-231 39-197 (846)
305 PF04762 IKI3: IKI3 family; I 97.7 0.12 2.7E-06 55.7 33.1 110 107-224 213-336 (928)
306 KOG1008 Uncharacterized conser 97.6 1.5E-05 3.1E-10 77.6 0.9 172 35-222 94-276 (783)
307 COG5354 Uncharacterized protei 97.6 0.012 2.6E-07 56.4 19.1 109 104-220 33-159 (561)
308 KOG2314 Translation initiation 97.5 0.039 8.5E-07 53.6 21.6 132 46-203 213-359 (698)
309 KOG2114 Vacuolar assembly/sort 97.4 0.017 3.8E-07 58.8 19.1 115 309-427 125-244 (933)
310 PF08450 SGL: SMP-30/Gluconola 97.4 0.092 2E-06 47.5 29.1 148 48-222 4-165 (246)
311 KOG2314 Translation initiation 97.4 0.0025 5.5E-08 61.4 12.2 100 312-412 252-362 (698)
312 KOG1645 RING-finger-containing 97.4 0.023 5.1E-07 52.9 17.5 74 148-224 196-269 (463)
313 KOG3617 WD40 and TPR repeat-co 97.4 0.0062 1.3E-07 61.7 14.8 92 125-221 40-131 (1416)
314 KOG1832 HIV-1 Vpr-binding prot 97.3 0.00014 3.1E-09 73.3 3.3 186 149-427 1105-1292(1516)
315 smart00320 WD40 WD40 repeats. 97.3 0.00061 1.3E-08 40.7 5.1 38 181-219 3-40 (40)
316 KOG2066 Vacuolar assembly/sort 97.3 0.0086 1.9E-07 60.5 15.4 155 39-221 54-233 (846)
317 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.018 3.9E-07 44.1 13.6 102 106-216 2-109 (111)
318 PF07433 DUF1513: Protein of u 97.3 0.13 2.9E-06 47.2 21.1 138 48-203 9-175 (305)
319 PF11768 DUF3312: Protein of u 97.2 0.0014 3.1E-08 63.8 8.8 73 307-426 257-329 (545)
320 PRK02888 nitrous-oxide reducta 97.2 0.015 3.2E-07 58.4 16.0 54 169-223 295-353 (635)
321 KOG1912 WD40 repeat protein [G 97.2 0.029 6.3E-07 56.6 17.2 153 46-219 18-184 (1062)
322 PRK11138 outer membrane biogen 97.2 0.27 5.9E-06 48.0 24.5 110 116-229 69-186 (394)
323 KOG2041 WD40 repeat protein [G 97.2 0.0028 6.1E-08 62.9 9.8 64 159-223 25-103 (1189)
324 PF11768 DUF3312: Protein of u 97.1 0.0041 8.8E-08 60.8 10.1 77 140-222 254-330 (545)
325 PF08596 Lgl_C: Lethal giant l 96.9 0.43 9.3E-06 46.3 26.3 131 45-178 3-173 (395)
326 KOG2114 Vacuolar assembly/sort 96.9 0.19 4.2E-06 51.5 20.4 213 114-404 33-264 (933)
327 PF08553 VID27: VID27 cytoplas 96.9 0.11 2.3E-06 54.3 19.1 103 115-219 492-604 (794)
328 KOG4649 PQQ (pyrrolo-quinoline 96.8 0.31 6.7E-06 43.2 23.5 109 116-229 23-131 (354)
329 PF04762 IKI3: IKI3 family; I 96.7 1.2 2.5E-05 48.4 38.3 69 103-175 75-147 (928)
330 KOG2444 WD40 repeat protein [G 96.6 0.0058 1.2E-07 52.7 6.3 107 115-222 69-178 (238)
331 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.13 2.8E-06 39.6 12.9 105 46-174 2-110 (111)
332 cd00216 PQQ_DH Dehydrogenases 96.6 0.98 2.1E-05 45.5 29.3 71 117-188 111-193 (488)
333 PF04841 Vps16_N: Vps16, N-ter 96.4 0.48 1E-05 46.4 19.1 49 171-222 62-110 (410)
334 KOG2395 Protein involved in va 96.3 0.14 3E-06 49.8 14.3 109 110-220 339-458 (644)
335 KOG1645 RING-finger-containing 96.3 0.046 9.9E-07 51.1 10.3 81 99-181 189-269 (463)
336 PF06433 Me-amine-dh_H: Methyl 96.1 1.2 2.5E-05 41.7 21.8 239 124-430 65-324 (342)
337 KOG1920 IkappaB kinase complex 96.1 0.68 1.5E-05 49.6 19.0 110 312-427 198-323 (1265)
338 PF07433 DUF1513: Protein of u 96.1 1.1 2.5E-05 41.2 24.3 96 109-207 10-115 (305)
339 KOG1008 Uncharacterized conser 96.0 0.0019 4.2E-08 63.3 0.3 158 43-219 56-223 (783)
340 KOG3621 WD40 repeat-containing 96.0 0.028 6.1E-07 56.1 8.1 109 316-427 40-155 (726)
341 PF08553 VID27: VID27 cytoplas 95.8 0.18 4E-06 52.6 13.6 99 117-221 543-647 (794)
342 PF03178 CPSF_A: CPSF A subuni 95.8 1.8 3.8E-05 40.9 20.7 94 127-224 3-118 (321)
343 KOG3621 WD40 repeat-containing 95.7 0.053 1.1E-06 54.2 8.7 120 150-340 35-155 (726)
344 PF04053 Coatomer_WDAD: Coatom 95.6 0.61 1.3E-05 46.0 15.7 101 312-425 71-172 (443)
345 COG3386 Gluconolactonase [Carb 95.4 2.4 5.1E-05 39.7 22.7 104 312-416 165-275 (307)
346 PF04053 Coatomer_WDAD: Coatom 95.4 0.34 7.3E-06 47.8 13.1 140 45-221 34-173 (443)
347 PRK02888 nitrous-oxide reducta 95.4 1.2 2.5E-05 45.3 16.7 104 317-427 284-405 (635)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.2 4.1 9E-05 41.4 28.3 71 117-187 121-198 (527)
349 KOG4441 Proteins containing BT 94.9 5 0.00011 41.2 20.4 138 55-215 284-440 (571)
350 PF12894 Apc4_WD40: Anaphase-p 94.9 0.076 1.6E-06 34.0 4.7 32 397-428 12-43 (47)
351 COG3391 Uncharacterized conser 94.8 4.4 9.5E-05 39.4 25.2 222 109-408 79-310 (381)
352 KOG1920 IkappaB kinase complex 94.7 7.7 0.00017 42.1 26.3 69 44-132 69-137 (1265)
353 PHA02713 hypothetical protein; 94.7 1.3 2.9E-05 45.3 15.9 24 320-343 512-537 (557)
354 COG0823 TolB Periplasmic compo 94.6 1.7 3.7E-05 42.7 15.7 120 315-440 243-372 (425)
355 COG0823 TolB Periplasmic compo 94.4 3.5 7.5E-05 40.5 17.2 91 127-220 219-311 (425)
356 KOG4649 PQQ (pyrrolo-quinoline 94.3 3.6 7.9E-05 36.7 15.1 70 116-187 63-132 (354)
357 PF08596 Lgl_C: Lethal giant l 94.2 6 0.00013 38.5 22.8 40 185-226 81-120 (395)
358 KOG4640 Anaphase-promoting com 94.1 0.27 5.9E-06 48.8 8.7 77 147-228 22-99 (665)
359 KOG2079 Vacuolar assembly/sort 93.5 0.35 7.6E-06 51.1 8.6 69 162-231 101-170 (1206)
360 PF12894 Apc4_WD40: Anaphase-p 93.5 0.25 5.4E-06 31.6 4.9 30 310-339 12-41 (47)
361 KOG2395 Protein involved in va 93.3 0.36 7.9E-06 47.0 7.8 97 120-221 398-500 (644)
362 PF10313 DUF2415: Uncharacteri 93.2 0.31 6.7E-06 30.3 4.8 32 44-75 1-34 (43)
363 PF03178 CPSF_A: CPSF A subuni 93.0 7.3 0.00016 36.7 16.6 147 56-221 42-202 (321)
364 COG3386 Gluconolactonase [Carb 92.8 7.5 0.00016 36.4 15.7 70 357-426 112-193 (307)
365 COG3391 Uncharacterized conser 92.8 9.9 0.00022 36.9 26.1 189 161-429 87-286 (381)
366 PF10313 DUF2415: Uncharacteri 92.5 0.45 9.7E-06 29.6 4.8 31 310-340 1-34 (43)
367 KOG2444 WD40 repeat protein [G 92.4 0.36 7.9E-06 42.0 5.9 102 321-426 70-177 (238)
368 PF14583 Pectate_lyase22: Olig 92.3 11 0.00024 36.1 27.4 153 50-222 42-223 (386)
369 PF05096 Glu_cyclase_2: Glutam 92.0 9.2 0.0002 34.6 16.5 119 105-229 45-165 (264)
370 PHA02713 hypothetical protein; 91.9 2.2 4.7E-05 43.7 12.0 103 115-222 398-534 (557)
371 PHA03098 kelch-like protein; P 91.1 15 0.00032 37.5 17.2 66 115-182 342-418 (534)
372 KOG3617 WD40 and TPR repeat-co 90.8 0.55 1.2E-05 48.4 6.0 104 316-426 22-131 (1416)
373 KOG4640 Anaphase-promoting com 90.6 1.2 2.7E-05 44.3 8.2 90 105-199 22-114 (665)
374 PF14870 PSII_BNR: Photosynthe 90.4 9.7 0.00021 35.5 13.6 102 310-418 145-254 (302)
375 PF14727 PHTB1_N: PTHB1 N-term 89.9 20 0.00044 35.0 15.9 72 145-220 128-203 (418)
376 PF14583 Pectate_lyase22: Olig 89.9 9.8 0.00021 36.4 13.3 157 45-220 189-380 (386)
377 PF05694 SBP56: 56kDa selenium 89.6 5 0.00011 38.9 11.1 99 125-223 221-344 (461)
378 KOG2079 Vacuolar assembly/sort 89.5 1.7 3.7E-05 46.2 8.5 99 117-221 100-203 (1206)
379 PF06433 Me-amine-dh_H: Methyl 89.0 20 0.00044 33.7 18.2 162 55-230 146-329 (342)
380 PF08728 CRT10: CRT10; InterP 88.8 29 0.00063 36.3 16.6 105 115-220 113-245 (717)
381 PF07676 PD40: WD40-like Beta 88.8 2 4.3E-05 25.9 5.5 29 395-423 7-38 (39)
382 PF00930 DPPIV_N: Dipeptidyl p 87.4 1.9 4.1E-05 41.3 7.2 101 318-423 1-128 (353)
383 PF10647 Gmad1: Lipoprotein Lp 86.7 24 0.00052 32.0 19.0 117 312-429 68-200 (253)
384 PF00780 CNH: CNH domain; Int 86.3 26 0.00057 31.9 27.6 143 55-224 6-168 (275)
385 PF00930 DPPIV_N: Dipeptidyl p 86.0 33 0.00072 32.8 20.0 91 126-220 23-130 (353)
386 PF07676 PD40: WD40-like Beta 85.4 4.4 9.6E-05 24.3 5.7 31 188-218 6-38 (39)
387 PF06977 SdiA-regulated: SdiA- 85.1 29 0.00062 31.4 15.9 43 184-227 15-57 (248)
388 PF05694 SBP56: 56kDa selenium 85.0 3.9 8.4E-05 39.6 7.5 95 329-427 220-343 (461)
389 PF02897 Peptidase_S9_N: Proly 84.9 38 0.00082 33.2 15.1 115 45-180 125-262 (414)
390 PRK13616 lipoprotein LpqB; Pro 84.8 52 0.0011 34.0 18.3 72 357-429 449-530 (591)
391 PHA03098 kelch-like protein; P 84.8 18 0.0004 36.8 13.2 103 115-222 389-512 (534)
392 KOG1916 Nuclear protein, conta 84.6 0.52 1.1E-05 49.0 1.7 117 101-221 130-265 (1283)
393 TIGR02604 Piru_Ver_Nterm putat 84.5 17 0.00036 35.1 12.1 102 312-415 16-142 (367)
394 PF07569 Hira: TUP1-like enhan 84.5 4.5 9.7E-05 35.8 7.4 27 317-343 18-44 (219)
395 KOG4441 Proteins containing BT 84.1 19 0.00041 37.1 12.7 137 55-214 380-534 (571)
396 PHA02790 Kelch-like protein; P 83.4 33 0.00072 34.5 14.0 100 115-222 362-471 (480)
397 COG3823 Glutamine cyclotransfe 82.5 32 0.0007 29.9 14.2 21 394-414 226-247 (262)
398 COG3490 Uncharacterized protei 82.5 13 0.00028 33.9 9.3 98 316-416 120-245 (366)
399 PHA02790 Kelch-like protein; P 82.3 58 0.0013 32.7 18.1 66 115-182 318-388 (480)
400 KOG4499 Ca2+-binding protein R 80.9 20 0.00044 31.7 9.6 81 118-201 172-264 (310)
401 cd00216 PQQ_DH Dehydrogenases 79.4 74 0.0016 32.1 23.5 106 117-225 62-187 (488)
402 PF11715 Nup160: Nucleoporin N 79.2 8.1 0.00018 39.6 8.2 39 192-231 216-258 (547)
403 PF12234 Rav1p_C: RAVE protein 79.0 41 0.0009 34.8 12.7 101 116-220 41-155 (631)
404 PF10647 Gmad1: Lipoprotein Lp 78.1 53 0.0012 29.7 12.5 106 311-423 25-141 (253)
405 TIGR03074 PQQ_membr_DH membran 78.0 48 0.001 35.4 13.4 110 116-229 194-352 (764)
406 TIGR03606 non_repeat_PQQ dehyd 77.2 54 0.0012 32.5 12.7 105 311-417 31-166 (454)
407 PF02897 Peptidase_S9_N: Proly 75.3 85 0.0018 30.7 14.7 107 113-222 132-261 (414)
408 PF07995 GSDH: Glucose / Sorbo 75.1 38 0.00082 32.1 10.9 103 312-419 4-136 (331)
409 TIGR02276 beta_rpt_yvtn 40-res 74.8 10 0.00022 22.9 4.8 31 200-230 1-31 (42)
410 PF10168 Nup88: Nuclear pore c 74.5 69 0.0015 34.0 13.3 34 309-342 146-182 (717)
411 TIGR02276 beta_rpt_yvtn 40-res 74.2 16 0.00036 21.9 5.7 28 118-145 6-33 (42)
412 TIGR03075 PQQ_enz_alc_DH PQQ-d 74.1 19 0.00042 36.6 9.1 60 126-188 441-500 (527)
413 PF01436 NHL: NHL repeat; Int 73.3 10 0.00023 20.9 4.0 26 398-423 3-28 (28)
414 PF06977 SdiA-regulated: SdiA- 71.8 77 0.0017 28.6 23.5 117 100-221 18-147 (248)
415 COG5167 VID27 Protein involved 71.7 24 0.00052 34.9 8.4 59 161-221 574-632 (776)
416 PF14781 BBS2_N: Ciliary BBSom 71.5 51 0.0011 26.5 13.2 124 49-185 4-132 (136)
417 TIGR03074 PQQ_membr_DH membran 70.9 82 0.0018 33.7 13.0 71 116-187 260-353 (764)
418 PF11715 Nup160: Nucleoporin N 70.6 11 0.00023 38.7 6.5 30 115-144 229-258 (547)
419 PF15390 DUF4613: Domain of un 70.3 1.2E+02 0.0026 30.9 13.0 120 306-426 53-186 (671)
420 KOG2377 Uncharacterized conser 69.9 23 0.00051 34.5 7.8 31 309-339 66-96 (657)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 68.6 44 0.00095 32.7 9.7 83 104-187 308-407 (415)
422 PF00780 CNH: CNH domain; Int 66.9 1E+02 0.0022 28.0 24.6 62 115-181 6-67 (275)
423 PF10168 Nup88: Nuclear pore c 66.7 60 0.0013 34.4 10.9 91 44-136 85-181 (717)
424 PF07569 Hira: TUP1-like enhan 66.5 45 0.00099 29.4 8.7 26 115-140 21-46 (219)
425 PF12234 Rav1p_C: RAVE protein 65.0 1.1E+02 0.0023 31.9 11.9 51 374-425 49-103 (631)
426 PF12657 TFIIIC_delta: Transcr 64.6 55 0.0012 27.6 8.6 31 397-427 86-122 (173)
427 PF01011 PQQ: PQQ enzyme repea 64.4 18 0.0004 21.6 4.1 25 163-187 3-27 (38)
428 COG3204 Uncharacterized protei 63.2 1.2E+02 0.0025 28.1 10.5 117 99-220 81-209 (316)
429 smart00564 PQQ beta-propeller 63.0 17 0.00037 20.5 3.8 25 162-186 8-32 (33)
430 PF12768 Rax2: Cortical protei 61.4 1.4E+02 0.0029 27.6 14.5 92 67-177 17-122 (281)
431 PRK13684 Ycf48-like protein; P 60.6 1.3E+02 0.0028 28.6 11.2 107 310-421 173-283 (334)
432 KOG3630 Nuclear pore complex, 59.9 1.7E+02 0.0038 32.3 12.5 29 311-339 200-228 (1405)
433 KOG1900 Nuclear pore complex, 57.9 1.2E+02 0.0025 34.0 11.1 34 394-427 240-273 (1311)
434 PF01731 Arylesterase: Arylest 57.5 66 0.0014 23.6 6.7 30 192-221 55-84 (86)
435 PF08728 CRT10: CRT10; InterP 57.0 2.3E+02 0.0051 29.9 12.8 130 40-177 99-245 (717)
436 KOG4499 Ca2+-binding protein R 55.2 1.6E+02 0.0034 26.4 13.0 98 47-153 161-261 (310)
437 PF14655 RAB3GAP2_N: Rab3 GTPa 53.7 1.6E+02 0.0035 28.9 10.6 80 148-230 310-407 (415)
438 TIGR02604 Piru_Ver_Nterm putat 53.1 2.2E+02 0.0047 27.4 14.7 28 390-417 177-204 (367)
439 KOG2280 Vacuolar assembly/sort 52.9 2.3E+02 0.0049 29.9 11.6 49 170-221 64-112 (829)
440 PF14781 BBS2_N: Ciliary BBSom 50.4 1.3E+02 0.0029 24.2 12.8 102 118-222 12-126 (136)
441 KOG3616 Selective LIM binding 48.7 47 0.001 34.6 6.2 31 312-342 17-47 (1636)
442 COG5167 VID27 Protein involved 48.3 3E+02 0.0065 27.7 12.1 107 109-219 472-589 (776)
443 PF12768 Rax2: Cortical protei 48.1 2.3E+02 0.0049 26.2 11.9 36 41-77 34-75 (281)
444 PF04841 Vps16_N: Vps16, N-ter 47.9 2.8E+02 0.0061 27.2 28.0 31 309-339 216-246 (410)
445 KOG1916 Nuclear protein, conta 47.7 6.5 0.00014 41.4 0.2 22 404-425 243-264 (1283)
446 KOG3630 Nuclear pore complex, 46.9 77 0.0017 34.8 7.6 36 396-431 198-233 (1405)
447 KOG1900 Nuclear pore complex, 46.7 2.6E+02 0.0057 31.5 11.6 34 307-340 240-273 (1311)
448 COG3823 Glutamine cyclotransfe 45.8 1.8E+02 0.0039 25.5 8.3 102 115-222 55-159 (262)
449 KOG1897 Damage-specific DNA bi 43.2 4.9E+02 0.011 28.6 28.3 56 162-218 501-563 (1096)
450 PRK13616 lipoprotein LpqB; Pro 41.5 4.3E+02 0.0093 27.5 21.5 106 310-418 448-560 (591)
451 PF15390 DUF4613: Domain of un 41.1 4.2E+02 0.0091 27.3 12.1 113 105-220 58-185 (671)
452 PF03022 MRJP: Major royal jel 40.9 3E+02 0.0064 25.5 15.2 61 171-231 35-106 (287)
453 KOG3616 Selective LIM binding 40.4 61 0.0013 33.8 5.5 63 108-176 19-81 (1636)
454 KOG1897 Damage-specific DNA bi 40.2 5.4E+02 0.012 28.3 26.6 107 312-422 777-894 (1096)
455 PF01731 Arylesterase: Arylest 39.9 79 0.0017 23.2 4.8 30 397-426 54-84 (86)
456 PF10584 Proteasome_A_N: Prote 39.0 8.5 0.00018 20.3 -0.3 8 403-410 7-14 (23)
457 TIGR03548 mutarot_permut cycli 38.1 3.4E+02 0.0074 25.4 13.7 65 115-182 123-198 (323)
458 KOG4460 Nuclear pore complex, 37.9 2.1E+02 0.0045 28.8 8.5 91 43-139 103-203 (741)
459 KOG4659 Uncharacterized conser 37.1 6.5E+02 0.014 28.8 12.5 28 307-334 659-686 (1899)
460 COG4257 Vgb Streptogramin lyas 36.9 3.4E+02 0.0074 25.0 10.1 113 311-427 63-187 (353)
461 PF14779 BBS1: Ciliary BBSome 36.9 2.9E+02 0.0062 25.1 8.7 74 101-174 174-254 (257)
462 PF14761 HPS3_N: Hermansky-Pud 36.7 1.7E+02 0.0038 25.7 7.1 58 368-426 29-96 (215)
463 COG3204 Uncharacterized protei 36.6 3.5E+02 0.0077 25.1 10.1 32 396-427 180-211 (316)
464 PF13449 Phytase-like: Esteras 33.1 4.2E+02 0.0091 24.9 12.3 24 309-332 19-42 (326)
465 KOG2377 Uncharacterized conser 32.9 5E+02 0.011 25.8 10.1 118 102-225 65-189 (657)
466 COG1520 FOG: WD40-like repeat 31.7 4.7E+02 0.01 25.0 12.1 73 117-190 69-141 (370)
467 PF10214 Rrn6: RNA polymerase 31.5 5.4E+02 0.012 27.7 11.4 103 311-413 147-265 (765)
468 PF14269 Arylsulfotran_2: Aryl 30.9 4.3E+02 0.0094 24.6 9.4 61 160-220 155-219 (299)
469 TIGR02608 delta_60_rpt delta-6 30.8 1.6E+02 0.0034 19.5 4.6 19 398-416 2-20 (55)
470 PF05096 Glu_cyclase_2: Glutam 30.5 4.2E+02 0.0092 24.2 20.0 164 41-230 40-212 (264)
471 KOG4460 Nuclear pore complex, 30.5 4.4E+02 0.0096 26.7 9.4 83 102-185 102-205 (741)
472 TIGR03032 conserved hypothetic 30.2 4.7E+02 0.01 24.6 10.1 84 115-202 212-316 (335)
473 KOG1896 mRNA cleavage and poly 29.1 8.9E+02 0.019 27.4 13.9 112 101-219 1095-1211(1366)
474 PF13570 PQQ_3: PQQ-like domai 28.7 90 0.002 18.6 3.1 20 321-340 21-40 (40)
475 PF03088 Str_synth: Strictosid 28.3 2.5E+02 0.0054 20.8 8.0 55 325-384 31-85 (89)
476 PF14761 HPS3_N: Hermansky-Pud 26.1 2.2E+02 0.0047 25.1 5.9 41 167-209 35-77 (215)
477 PF12341 DUF3639: Protein of u 25.7 1.3E+02 0.0028 16.7 3.7 25 398-424 3-27 (27)
478 PF03022 MRJP: Major royal jel 24.2 5.7E+02 0.012 23.6 9.4 63 127-189 35-107 (287)
479 TIGR03606 non_repeat_PQQ dehyd 23.9 1.5E+02 0.0033 29.5 5.2 34 395-428 28-61 (454)
480 KOG0379 Kelch repeat-containin 20.9 7.6E+02 0.016 24.9 9.7 64 115-182 122-202 (482)
481 TIGR03032 conserved hypothetic 20.7 7.2E+02 0.016 23.5 10.1 84 320-410 212-318 (335)
No 1
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5e-52 Score=355.81 Aligned_cols=361 Identities=55% Similarity=0.957 Sum_probs=318.7
Q ss_pred CccccccccccccCCchhhhhhhh-cccceeccccceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCC
Q 013274 1 MWKEIGGREAGQIRPNSFANRVKS-HRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDY 79 (446)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~ 79 (446)
||+-..+||.| ++++.+++|.++ .++..|+++.-+.+..+|-|+||+|+..+.+|++++||+.||.|.|||+++...+
T Consensus 1 M~~fl~aRetG-~e~ns~~rR~~s~rRil~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~ 79 (397)
T KOG4283|consen 1 MWSFLKARETG-QESNSFARRFKSQRRILSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY 79 (397)
T ss_pred Cchhhhhhhhc-CCCchHHHHHHhhhhhheeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccch
Confidence 89999999999 999999999999 7899999988888999999999999999999999999999999999999999888
Q ss_pred CCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCC
Q 013274 80 EGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS 159 (446)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (446)
+..+.+.++.++ +..++..+|+.+|.++.|+|.|...|.|+|-|+++++||+++-+....|.+++.+|+-+++|....
T Consensus 80 e~s~li~k~~c~--v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~s 157 (397)
T KOG4283|consen 80 EASGLIAKHKCI--VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMS 157 (397)
T ss_pred hhccceeheeee--ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhc
Confidence 888888888776 567788999999999999999999999999999999999999999999999999999999999988
Q ss_pred ceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC-ceeEEeecccccccC
Q 013274 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGR 238 (446)
Q Consensus 160 ~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~-~~~~~~~~~~~~~~~ 238 (446)
+.++|+|..|-+|++.|+.+|.+..+|.||.+.|.+|.|+|..+|+|+||+.||.||+||+|.. +|++.++.++..
T Consensus 158 HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k--- 234 (397)
T KOG4283|consen 158 HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK--- 234 (397)
T ss_pred ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc---
Confidence 9999999999999999999999999999999999999999999999999999999999999987 888888765531
Q ss_pred CCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEc
Q 013274 239 RPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT 318 (446)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs 318 (446)
.+|.+ +...+|++.|..++|+
T Consensus 235 ~~p~~-----------------------------------------------------------~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 235 RPPIL-----------------------------------------------------------KTNTAHYGKVNGLAWT 255 (397)
T ss_pred cCccc-----------------------------------------------------------cccccccceeeeeeec
Confidence 11110 0125789999999999
Q ss_pred cCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec--CCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccc
Q 013274 319 EDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT--SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY 396 (446)
Q Consensus 319 ~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~ 396 (446)
.||.++++.+-|.++++|+..+|++++.++.....+. ...+....-..+..++++..+.+.++.+.++..++.+.+|-
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~ 335 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL 335 (397)
T ss_pred ccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeeccc
Confidence 9999999999999999999999988776554332221 11222332233455667777899999999999999999999
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 397 EYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 397 ~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
..|+|.+|-||-+.+.+|+.|+.|-.|.|.
T Consensus 336 k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 336 KRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ceeeEEeecCchhhhhccccCCcccccccc
Confidence 999999999999999999999999999984
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-48 Score=342.85 Aligned_cols=355 Identities=22% Similarity=0.362 Sum_probs=258.4
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+.||.+.|-|++|+| ++..|||||.|.++|+||+.+.+. ..+..||+.-|.|+.|+| |++.
T Consensus 111 ~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp-----------------~~t~KgH~~WVlcvawsP-Dgk~ 171 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETP-----------------LFTCKGHKNWVLCVAWSP-DGKK 171 (480)
T ss_pred cCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCc-----------------ceeecCCccEEEEEEECC-Ccch
Confidence 568999999999998 688999999999999999987542 123469999999999998 8999
Q ss_pred EEEEeCCCeEEEEECCCCeeeE-EEe-cCCceEEeeeccCC--CCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVM-NFK-MPGKVYRTAMSPLA--ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~-~~~-~~~~~~~~~~~~~~--~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~ 194 (446)
+|||+.||+|++||.++++++- .+. +...+..+++.|.. +...+||+++.||+|+|||+..+.++..+.||+.+|+
T Consensus 172 iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT 251 (480)
T KOG0271|consen 172 IASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT 251 (480)
T ss_pred hhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence 9999999999999999887653 333 33457888888764 3345899999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCC--Cccc--c-
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR--APQK--R- 269 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~- 269 (446)
||.|-.+ .+|+|||.|++||+|+...+.+++.+..+..-+.... ......+........... .... +
T Consensus 252 CvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la------lsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 252 CVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA------LSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred EEEEcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeee------ccchhhhhccccccccccCCChHHHHHH
Confidence 9999644 3689999999999999998888777755432211100 000000000000000000 0000 0
Q ss_pred -ccCCCc-eeecccceeecCCcccccc-CCCcc-cccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceee
Q 013274 270 -SANGNG-VRQSSVGRIPAKGSVRQRL-HPGML-SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 345 (446)
Q Consensus 270 -~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~ 345 (446)
....+. ...+..--+.........+ .+... .+..+..+|...|+.+.||||++|+||+|-|+.||+||..+|+.
T Consensus 324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-- 401 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF-- 401 (480)
T ss_pred HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch--
Confidence 000000 0000000000111111111 11111 12235679999999999999999999999999999999999864
Q ss_pred eeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274 346 VNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 424 (446)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~ 424 (446)
+..++.+....++++.+.|..++++++. .++++|++.+.++...|+||.+.|.++.|||||+++++|+.|..+|+|.
T Consensus 402 --lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 402 --LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 2334445567788999999999888765 5799999999999999999999999999999999999999999999995
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4e-43 Score=300.98 Aligned_cols=291 Identities=19% Similarity=0.369 Sum_probs=234.9
Q ss_pred eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (446)
Q Consensus 36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~ 115 (446)
++++++|.+.|+++.|++ |.++|+|+|.||.+.|||.-+..+. ..+ .-...-|-.++++| .
T Consensus 48 rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~---------hai--------pl~s~WVMtCA~sP-S 108 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKV---------HAI--------PLPSSWVMTCAYSP-S 108 (343)
T ss_pred EEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccce---------eEE--------ecCceeEEEEEECC-C
Confidence 578999999999999986 7899999999999999998654321 000 11234566677776 7
Q ss_pred CcEEEEEeCCCeEEEEECCCC--e--eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274 116 TGLFVTGSYDHYVKVWDTNCT--R--VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~ 191 (446)
++.+|.||.|+..-||++.+. + ......+.++.-.++...+.. ...|+++|.|.++-+||++++.....|.||.+
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcc
Confidence 889999999999999999855 2 112222344433333333322 34688999999999999999999999999999
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA 271 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (446)
.|.+++++|...+.|+||+.|+..+|||+|.+.|.+.|
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF------------------------------------------ 225 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF------------------------------------------ 225 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEee------------------------------------------
Confidence 99999999944446899999999999999988776554
Q ss_pred CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274 272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 351 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~ 351 (446)
.+|.+.|++|.|.|+|.-++||+.|+++|+||++..++ +..|+..
T Consensus 226 ----------------------------------~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~ 270 (343)
T KOG0286|consen 226 ----------------------------------EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHD 270 (343)
T ss_pred ----------------------------------cccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccC
Confidence 36888899999999999999999999999999998754 3333321
Q ss_pred EeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274 352 RLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 424 (446)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~ 424 (446)
....+...++|+..+.+++.+.. ..+.+||.-+++....|.||.++|+|+..+|||..|+|||+|.++|||.
T Consensus 271 -~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 271 -SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 12234567899999999998754 5899999999999999999999999999999999999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-44 Score=322.45 Aligned_cols=283 Identities=22% Similarity=0.362 Sum_probs=242.3
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-CCcEE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTGLF 119 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-~~~~l 119 (446)
+-+++|..+.|+. ++..|||||-+|.++||+...... .+.+.||+..|.++.|+|. ++..+
T Consensus 173 gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~-----------------~~~l~gH~~~v~~~~fhP~~~~~~l 234 (459)
T KOG0272|consen 173 GDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNL-----------------LQTLRGHTSRVGAAVFHPVDSDLNL 234 (459)
T ss_pred cCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcce-----------------eEEEeccccceeeEEEccCCCccce
Confidence 5678999999985 688999999999999999865421 2345799999999999998 46799
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 120 VTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
|||+.||++++|++++..++..+..+ ..+..++|+| ++.+|+++|.|.+.++||++++..+...+||...|.+++|
T Consensus 235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP---sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf 311 (459)
T KOG0272|consen 235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP---SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAF 311 (459)
T ss_pred eeeccCCceeeeccCCCcchhhhhcchhhheeeeecC---CCceeeecccccchhhcccccchhhHhhcccccccceeEe
Confidence 99999999999999987777766532 3466777777 4568999999999999999999999899999999999999
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (446)
.|+|. +++||+.|..-||||+|++.|+-.+
T Consensus 312 ~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L------------------------------------------------- 341 (459)
T KOG0272|consen 312 QPDGS-LAATGGLDSLGRVWDLRTGRCIMFL------------------------------------------------- 341 (459)
T ss_pred cCCCc-eeeccCccchhheeecccCcEEEEe-------------------------------------------------
Confidence 99998 5799999999999999998875443
Q ss_pred cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274 279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 358 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~ 358 (446)
.+|..+|.+|+|+|+|..|||||.|+++||||++..+. +..+..+.+.+
T Consensus 342 ---------------------------~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~----ly~ipAH~nlV 390 (459)
T KOG0272|consen 342 ---------------------------AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE----LYTIPAHSNLV 390 (459)
T ss_pred ---------------------------cccccceeeEeECCCceEEeecCCCCcEEEeeeccccc----ceecccccchh
Confidence 36888899999999999999999999999999987653 23344455667
Q ss_pred eEEEEcC-CCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274 359 IQLATTQ-DPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 359 ~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
..+.+.| .+.+++.++ +..+++|.-.++.++++|.||++.|.+|.+|||+++++|+|.|+++|+|.+
T Consensus 391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred hheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 7888998 455565554 468999999999999999999999999999999999999999999999975
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-38 Score=271.48 Aligned_cols=294 Identities=21% Similarity=0.345 Sum_probs=231.8
Q ss_pred eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (446)
Q Consensus 36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~ 115 (446)
+..+++|++.|..++..+.+...|+++|.|.++.+|++......- + . ....+.||...|..+..++ +
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~--G-----~-----~~r~~~GHsH~v~dv~~s~-d 74 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY--G-----V-----PVRRLTGHSHFVSDVVLSS-D 74 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc--C-----c-----eeeeeeccceEecceEEcc-C
Confidence 445789999999999987667899999999999999997653210 0 0 1123468999999988886 8
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC-CCCCe
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG-HRDGI 193 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~-h~~~v 193 (446)
+++++|+|+|+++|+||+++++..+.|.. ...+.+++++++. ..+++|+.|.+|++||+..+-......+ |.+-|
T Consensus 75 g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn---~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN---RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV 151 (315)
T ss_pred CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCC---ceeecCCCcceeeeeeecccEEEEEecCCCcCcE
Confidence 99999999999999999999987777764 3447888888754 4799999999999999876644443333 37889
Q ss_pred EEEEEecCC-CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274 194 MTVEWSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272 (446)
Q Consensus 194 ~sv~~s~~~-~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (446)
.+|.|+|+. +-+++++|+|+++|+||+++.+..
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~---------------------------------------------- 185 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR---------------------------------------------- 185 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcchh----------------------------------------------
Confidence 999999984 346899999999999999864311
Q ss_pred CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 352 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~ 352 (446)
....+|.+.++.+.+||||..+++|+.||.+.+||+..++. +..++.
T Consensus 186 ------------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-lysl~a-- 232 (315)
T KOG0279|consen 186 ------------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-LYSLEA-- 232 (315)
T ss_pred ------------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-eEeccC--
Confidence 01357889999999999999999999999999999998875 222211
Q ss_pred eecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEec----cc-----ccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274 353 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR----GH-----YEYVNCCCFSSQDQELYTGGNDRQILVW 423 (446)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~----gH-----~~~v~~~~fSpd~~~lvtgs~D~~v~vW 423 (446)
......++|+|...-+..+....+++||+.++..+.+|. |- .-.-..++||+||+.|..|-.|+.|++|
T Consensus 233 --~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 233 --FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred --CCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 223445788888777777888899999999987765443 22 2234789999999999999999999999
Q ss_pred CCC
Q 013274 424 CPS 426 (446)
Q Consensus 424 ~~~ 426 (446)
.+.
T Consensus 311 qv~ 313 (315)
T KOG0279|consen 311 QVA 313 (315)
T ss_pred Eee
Confidence 764
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.6e-38 Score=287.34 Aligned_cols=369 Identities=18% Similarity=0.252 Sum_probs=254.8
Q ss_pred ceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274 35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (446)
Q Consensus 35 ~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~ 114 (446)
|+..+..|+..|+|++|+| ||.++||+|.||+|.+||.++++.. -.+ ....+|++.|.++.|+|
T Consensus 182 Fk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~v------------g~l--~~~~aHkGsIfalsWsP- 245 (603)
T KOG0318|consen 182 FKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKV------------GEL--EDSDAHKGSIFALSWSP- 245 (603)
T ss_pred eeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEE------------EEe--cCCCCccccEEEEEECC-
Confidence 3444567999999999997 5789999999999999999887642 111 11358999999999998
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~ 194 (446)
|+++|+|+|.|+++||||+.+.++++++.+...+....+.+..+ ...|++-+.+|.|-+++...+..++.+.||+..|+
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT 324 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT 324 (603)
T ss_pred CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence 89999999999999999999999999999887765555555555 34677888999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEe-ecccccccCCCccccccee-ec-----cccccCCCCCcCCCCcc
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL-DQSQSQLGRRPPLLKRKVS-IS-----KSLSAGQNSSVKPRAPQ 267 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~ 267 (446)
+++.+|++++ |.||+.||.|.-||+.++.+.+.. +.+..++.+.......... +. +.+.......... ...
T Consensus 325 aLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~-~~~ 402 (603)
T KOG0318|consen 325 ALTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKS-EVV 402 (603)
T ss_pred EEEEcCCCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccc-cee
Confidence 9999999986 689999999999999887765443 2222222111000000000 00 0000000000000 000
Q ss_pred ccccCCCceeeccccee--e-cCCccccccC-CCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce
Q 013274 268 KRSANGNGVRQSSVGRI--P-AKGSVRQRLH-PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 343 (446)
Q Consensus 268 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~ 343 (446)
+......+++..+.+.. . ....+. .+. ...... ..-.-...+++++|++.+++.|+.|+.|++|.+..+..
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~~iv-~l~~~~~~~~----~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l 477 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACISDIV-LLQDQTKVSS----IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL 477 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecCcEE-EEecCCccee----eccccccceEEEcCCCCEEEEecccceEEEEEecCCcc
Confidence 00111112222222100 0 000000 000 000000 01112367899999999999999999999999986432
Q ss_pred eeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecc-cccceEEEEEcCCCCEEEEeeCCCcEE
Q 013274 344 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQIL 421 (446)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~g-H~~~v~~~~fSpd~~~lvtgs~D~~v~ 421 (446)
.....+..+...+..++++||+.+++++.. ..+.+||+.+++.....-+ |+..|+||+||||+++|||||.|.+|.
T Consensus 478 --~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vi 555 (603)
T KOG0318|consen 478 --KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVI 555 (603)
T ss_pred --cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEE
Confidence 222222334566778999999999988754 5789999999987654444 999999999999999999999999999
Q ss_pred EeCCCCCC
Q 013274 422 VWCPSRHI 429 (446)
Q Consensus 422 vW~~~~~~ 429 (446)
||+++++.
T Consensus 556 iysv~kP~ 563 (603)
T KOG0318|consen 556 IYSVKKPA 563 (603)
T ss_pred EEEccChh
Confidence 99998764
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.8e-37 Score=265.24 Aligned_cols=289 Identities=21% Similarity=0.358 Sum_probs=230.5
Q ss_pred eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (446)
Q Consensus 36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~ 115 (446)
.+.+.+|.|.|+.+.|+| +|..|||||.|..|.+|++..... .. ....||+++|..+-+.+ |
T Consensus 40 ~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdce-----------N~-----~~lkgHsgAVM~l~~~~-d 101 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCE-----------NF-----WVLKGHSGAVMELHGMR-D 101 (338)
T ss_pred hhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEecccccc-----------ce-----eeeccccceeEeeeecc-C
Confidence 345679999999999998 789999999999999999754321 01 11249999999988876 8
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~ 194 (446)
+..++|+|.|++|+.||.++++.++++..... ++.+. |...+..++.+|+.|+++++||+++...++++. ..-+++
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT 178 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence 88999999999999999999999988875433 33333 555667899999999999999999988887775 346799
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN 274 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (446)
+|.|...+.. +++|+-|+.|++||+|.+.++..
T Consensus 179 Av~f~d~s~q-v~sggIdn~ikvWd~r~~d~~~~---------------------------------------------- 211 (338)
T KOG0265|consen 179 AVGFKDTSDQ-VISGGIDNDIKVWDLRKNDGLYT---------------------------------------------- 211 (338)
T ss_pred EEEecccccc-eeeccccCceeeeccccCcceEE----------------------------------------------
Confidence 9999988775 57999999999999997654332
Q ss_pred ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce--e-eeeeeEE
Q 013274 275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN--T-LVNFETV 351 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~--~-~~~~~~~ 351 (446)
..||..+|+.|..+|+|.++.|.+.|.++++||++--.+ . +..++..
T Consensus 212 ------------------------------lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~ 261 (338)
T KOG0265|consen 212 ------------------------------LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH 261 (338)
T ss_pred ------------------------------eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence 247888999999999999999999999999999875221 1 1112221
Q ss_pred EeecC-CCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEE
Q 013274 352 RLQTS-KPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV 422 (446)
Q Consensus 352 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~v 422 (446)
....+ .....+.+|+...+..+. +..+.+||......+..|+||.+.|++++|+|....|.+|+.|.+|.+
T Consensus 262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 11111 223456677777665554 457899999999999999999999999999999999999999999876
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.6e-37 Score=296.45 Aligned_cols=259 Identities=22% Similarity=0.419 Sum_probs=211.6
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcC--CCCCCccccc------------cceEEeccccccCccccEeEE
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATD--YEGGGHIAKH------------RSVFVVDKQHEHGHKYAISSA 109 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~--~~~~~~~~~~------------~~~~~~~~~~~~gh~~~V~~~ 109 (446)
..++|..|+ ++++.||.|-.|..|++|.+..... .+....+... ...-........||.++|..+
T Consensus 379 ~~v~ca~fS-ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 379 QGVTCAEFS-DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CcceeEeec-CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 468999998 4778999999999999999874210 0000000000 000001112356999999999
Q ss_pred EEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274 110 IWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG 188 (446)
Q Consensus 110 ~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~ 188 (446)
.|+| +..+|+|||.|+++|+|++.+..++..+.. ..++..+.|+|. +.++|+++.|.+.++|..+...+.+.+.|
T Consensus 458 sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~---GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR---GYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC---ceEEEecCCCceeeeeecccCCchhhhcc
Confidence 9998 778999999999999999999888877762 334667777765 56999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccc
Q 013274 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQK 268 (446)
Q Consensus 189 h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (446)
|-+.|.|+.|+|+..+ ++|||.|.++|+||..++.+++.|
T Consensus 534 hlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~VRiF--------------------------------------- 573 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVSTGNSVRIF--------------------------------------- 573 (707)
T ss_pred cccccceEEECCcccc-cccCCCCceEEEEEcCCCcEEEEe---------------------------------------
Confidence 9999999999999886 799999999999999988766554
Q ss_pred cccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeee
Q 013274 269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF 348 (446)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~ 348 (446)
.||.++|++|+|||+|+||+||+.|+.|++||+.+++
T Consensus 574 -------------------------------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~------ 610 (707)
T KOG0263|consen 574 -------------------------------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS------ 610 (707)
T ss_pred -------------------------------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc------
Confidence 4789999999999999999999999999999987653
Q ss_pred eEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 349 ETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
++.+|.+|++.|.++.||.||..||+||.|++|++||....
T Consensus 611 ---------------------------------------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 611 ---------------------------------------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ---------------------------------------chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 33567899999999999999999999999999999998755
Q ss_pred C
Q 013274 429 I 429 (446)
Q Consensus 429 ~ 429 (446)
.
T Consensus 652 ~ 652 (707)
T KOG0263|consen 652 I 652 (707)
T ss_pred c
Confidence 4
No 9
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=255.90 Aligned_cols=336 Identities=17% Similarity=0.216 Sum_probs=236.4
Q ss_pred eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
..+..|+++|++++.+| +.++++|||.|....||++.++... ....||+..|+++.|+. ++
T Consensus 58 ~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~Fsh-dg 118 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSFSH-DG 118 (399)
T ss_pred eehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEEcc-Cc
Confidence 34679999999999998 6789999999999999999877521 12369999999998876 89
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s 195 (446)
.+||||+.+|.|+||...++.....+.. -+.+..+.++| ...+|++|+.||++-+|.+.++...+.+.||+.++++
T Consensus 119 tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp---~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~ 195 (399)
T KOG0296|consen 119 TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP---RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTC 195 (399)
T ss_pred eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc---cccEEEeecCCCcEEEEECCCcceeeEecCCCCCccc
Confidence 9999999999999999999887766642 23355666666 4458999999999999999998889999999999999
Q ss_pred EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC-
Q 013274 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN- 274 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 274 (446)
-.|.|+|++ ++++..||+|++||+.++..+..+.... +...+.+.... ... ........+.
T Consensus 196 G~f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~~~~~~e---~~~~~~~~~~~----------~~~----~~~~g~~e~~~ 257 (399)
T KOG0296|consen 196 GEFIPDGKR-ILTGYDDGTIIVWNPKTGQPLHKITQAE---GLELPCISLNL----------AGS----TLTKGNSEGVA 257 (399)
T ss_pred ccccCCCce-EEEEecCceEEEEecCCCceeEEecccc---cCcCCcccccc----------ccc----eeEeccCCccE
Confidence 999999997 6899999999999999886654443211 11111000000 000 0000000000
Q ss_pred ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEc---cCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274 275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT---EDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 351 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs---~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~ 351 (446)
.+... ..+.+....++. .......+...+.+|.|. ..=.+.|.|+.||+|-|||+.+.+.+. .
T Consensus 258 ~~~~~------~sgKVv~~~n~~---~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~-----~ 323 (399)
T KOG0296|consen 258 CGVNN------GSGKVVNCNNGT---VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH-----I 323 (399)
T ss_pred EEEcc------ccceEEEecCCC---CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe-----e
Confidence 00000 011111111110 000112333344455444 444678999999999999998754221 1
Q ss_pred EeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 352 RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
-.+....+.+.+-++..++.......+++||..+|.++.++.||...|.+++++||.++++|+|.|++.+|+..+
T Consensus 324 c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 324 CEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 112345666777774444444445689999999999999999999999999999999999999999999999764
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-35 Score=263.04 Aligned_cols=286 Identities=26% Similarity=0.394 Sum_probs=213.6
Q ss_pred cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (446)
Q Consensus 98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd 176 (446)
...||..+|.|+.|+| ++.+|+|||-|.|+|+||+.+..+..+...+ ..+.+++++|+ ...||+|+.||+|++||
T Consensus 110 S~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD---gk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD---GKKIASGSKDGSIRLWD 185 (480)
T ss_pred ccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC---cchhhccccCCeEEEec
Confidence 3469999999999998 8999999999999999999999988766533 34778888875 45899999999999999
Q ss_pred CCCCce-eeeeeCCCCCeEEEEEecC-----CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274 177 IASGAI-SQTLSGHRDGIMTVEWSTS-----SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS 250 (446)
Q Consensus 177 ~~~~~~-~~~l~~h~~~v~sv~~s~~-----~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (446)
.++|.. ...|++|...|++++|.|- .+ .|+|+|.||+|+|||+..+.|+..+..+...+.. +.--
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTC--------vrwG 256 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTC--------VRWG 256 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEeccCccceEE--------EEEc
Confidence 999864 5789999999999998764 34 5899999999999999998888877655432210 0000
Q ss_pred cccccCCCCCcCCCCccccccCCCceeecccceeecCCcccccc-----CCCcccccccccccccCeEEEEEc-------
Q 013274 251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL-----HPGMLSSQDRATAHYGAVTGLKVT------- 318 (446)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~fs------- 318 (446)
+. + +.+.++.+..+ ..+.+. ..+.+|...|+.|+.+
T Consensus 257 -----G~-----------------g--------liySgS~DrtIkvw~a~dG~~~--r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 257 -----GE-----------------G--------LIYSGSQDRTIKVWRALDGKLC--RELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred -----CC-----------------c--------eEEecCCCceEEEEEccchhHH--Hhhcccchheeeeeccchhhhhc
Confidence 00 0 00000000000 000000 1234555566665554
Q ss_pred ----cCC-------------------------CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcE
Q 013274 319 ----EDG-------------------------MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAV 369 (446)
Q Consensus 319 ----~dg-------------------------~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (446)
|.| ..|+||+.|.++-+|+....+... ..+..++.....+.|+||+.+
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi---~rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI---TRMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch---hhhhchhhheeeEEECCCccE
Confidence 223 359999999999999976543221 122233445678999999999
Q ss_pred EEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCC
Q 013274 370 VFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 431 (446)
Q Consensus 370 ~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~ 431 (446)
+++++. ..|++|+..+|+.+.+|+||-+.|..++||.|.++|||||.|.+++||++.+.++-
T Consensus 382 IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 382 IASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred EEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec
Confidence 999865 58999999999999999999999999999999999999999999999999866543
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7e-36 Score=268.14 Aligned_cols=255 Identities=22% Similarity=0.334 Sum_probs=218.1
Q ss_pred CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC
Q 013274 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS 179 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~ 179 (446)
|-..+|..+.|+ .+++.|+|||++|.+++|+..+...+.++. +.+.+-.+.|+|.. +..-+|+++.||++++|++++
T Consensus 173 gd~rPis~~~fS-~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFS-RDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEee-cCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCC
Confidence 445567665555 489999999999999999999887776665 45567788898874 345689999999999999999
Q ss_pred CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS 259 (446)
Q Consensus 180 ~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (446)
..++..|.+|...|..|+|+|+|++ |+|+|.|.+-|+||++++..+-
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL-------------------------------- 297 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELL-------------------------------- 297 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhH--------------------------------
Confidence 9999999999999999999999995 7999999999999998753110
Q ss_pred CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274 260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 339 (446)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~ 339 (446)
...||...|.+++|.|||..++|||.|..-||||+.
T Consensus 298 --------------------------------------------~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR 333 (459)
T KOG0272|consen 298 --------------------------------------------LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR 333 (459)
T ss_pred --------------------------------------------hhcccccccceeEecCCCceeeccCccchhheeecc
Confidence 024788899999999999999999999999999999
Q ss_pred cCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcC-CCCEEEEeeCC
Q 013274 340 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGGND 417 (446)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp-d~~~lvtgs~D 417 (446)
++++.+. +..+......+.++|.+..++.++. +.+++||+...+.+.++++|.+-|+.|.|+| .|.+|+|||.|
T Consensus 334 tgr~im~----L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 334 TGRCIMF----LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred cCcEEEE----ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 9987543 2234556778999999999888755 6899999999999999999999999999999 68999999999
Q ss_pred CcEEEeCCCCCCCCCcCCCcc
Q 013274 418 RQILVWCPSRHISDGVDAGPM 438 (446)
Q Consensus 418 ~~v~vW~~~~~~~~~~~~~~~ 438 (446)
++++||...+--+.+.++|-+
T Consensus 410 ~t~kiWs~~~~~~~ksLaGHe 430 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPLKSLAGHE 430 (459)
T ss_pred cceeeecCCCcccchhhcCCc
Confidence 999999999888888888854
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.7e-34 Score=239.54 Aligned_cols=284 Identities=20% Similarity=0.263 Sum_probs=220.5
Q ss_pred CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC
Q 013274 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC 135 (446)
Q Consensus 56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 135 (446)
.-+|||+|-|.+||+|...+|.++.. .++ ..+.|..+...| +.+.||+|+.. .||+||+++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT--------------iqh---~dsqVNrLeiTp-dk~~LAaa~~q-hvRlyD~~S 70 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT--------------IQH---PDSQVNRLEITP-DKKDLAAAGNQ-HVRLYDLNS 70 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE--------------Eec---CccceeeEEEcC-CcchhhhccCC-eeEEEEccC
Confidence 46899999999999999988876421 111 124577777776 77788888875 699999987
Q ss_pred Ce--eeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCC
Q 013274 136 TR--VVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD 212 (446)
Q Consensus 136 ~~--~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D 212 (446)
+. ++.+|..+ ..+..+.|..+ +....+|+.||+++|||++...+.+.++ |..+|.+|...|+... |++|..+
T Consensus 71 ~np~Pv~t~e~h~kNVtaVgF~~d---grWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQte-Lis~dqs 145 (311)
T KOG0315|consen 71 NNPNPVATFEGHTKNVTAVGFQCD---GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTE-LISGDQS 145 (311)
T ss_pred CCCCceeEEeccCCceEEEEEeec---CeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcce-EEeecCC
Confidence 65 57777654 66888888875 4589999999999999999966655554 7799999999998764 7899999
Q ss_pred CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccc
Q 013274 213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 292 (446)
Q Consensus 213 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (446)
|.|++||++...|-..+.
T Consensus 146 g~irvWDl~~~~c~~~li-------------------------------------------------------------- 163 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELI-------------------------------------------------------------- 163 (311)
T ss_pred CcEEEEEccCCccccccC--------------------------------------------------------------
Confidence 999999998754421110
Q ss_pred ccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce--eeeeeeEEEeecCCCeEEEEcCCCcEE
Q 013274 293 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN--TLVNFETVRLQTSKPIQLATTQDPAVV 370 (446)
Q Consensus 293 ~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (446)
..-.-+|.++...|||++|+.+...|++.+|++-+... .+..+..+..+........++|+..++
T Consensus 164 -------------Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 164 -------------PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred -------------CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence 00013488999999999999999999999999987431 223333344455667778899999988
Q ss_pred EEeCC-CceEEEEeecC-ceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcCCCcc
Q 013274 371 FVPCM-TAVKAFDIWSG-KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPM 438 (446)
Q Consensus 371 ~~~~~-~~~~~~d~~~~-~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~~~~~ 438 (446)
+..+. ..+++|...+. ++-..+.||..++++++||.|+++|+|||.|+++|+|+++..+--+.-+|..
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 87654 58999999887 6667899999999999999999999999999999999998776444444443
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.3e-34 Score=240.27 Aligned_cols=234 Identities=21% Similarity=0.389 Sum_probs=189.1
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--eeeeeeCCCCCe
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHRDGI 193 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--~~~~l~~h~~~v 193 (446)
-+|+|+|+|.+||+|...+|.+.++++++ ++++++.++|+.. .||+++ .-.|++||+++++ ++.++.+|++.|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~---~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKK---DLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcc---hhhhcc-CCeeEEEEccCCCCCceeEEeccCCce
Confidence 48999999999999999999999999975 5689999988643 455554 4579999999875 688999999999
Q ss_pred EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG 273 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (446)
++|.|.-+++| ++|||+||++||||+|...|.+.
T Consensus 87 taVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~--------------------------------------------- 120 (311)
T KOG0315|consen 87 TAVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRN--------------------------------------------- 120 (311)
T ss_pred EEEEEeecCeE-EEecCCCceEEEEeccCcccchh---------------------------------------------
Confidence 99999999998 79999999999999997543222
Q ss_pred CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEe
Q 013274 274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL 353 (446)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~ 353 (446)
..|..+|++|..+|+...|++|..+|.|++||+.+......... .
T Consensus 121 --------------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP---e 165 (311)
T KOG0315|consen 121 --------------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP---E 165 (311)
T ss_pred --------------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC---C
Confidence 13457799999999999999999999999999987533221111 1
Q ss_pred ecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecC------ceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 354 QTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSG------KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~------~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
.......+...+|+.+++.+.. +.+.+|++... +++..|+.|++.++.+.||||+++|||||+|.+++||+.+
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 1123445777889888877654 68999998664 3456899999999999999999999999999999999998
Q ss_pred CC-CCCCcCC
Q 013274 427 RH-ISDGVDA 435 (446)
Q Consensus 427 ~~-~~~~~~~ 435 (446)
.- +++.++.
T Consensus 246 ~~~kle~~l~ 255 (311)
T KOG0315|consen 246 DFFKLELVLT 255 (311)
T ss_pred CceeeEEEee
Confidence 66 3443333
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=249.25 Aligned_cols=290 Identities=22% Similarity=0.365 Sum_probs=224.2
Q ss_pred cceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee
Q 013274 34 NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP 113 (446)
Q Consensus 34 ~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~ 113 (446)
....|+++|.|=|.|+++.| .+.+++|||.|++|+|||+.++... .+..||...|..+++++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lk-----------------ltltGhi~~vr~vavS~ 203 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLK-----------------LTLTGHIETVRGVAVSK 203 (460)
T ss_pred eehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEE-----------------Eeecchhheeeeeeecc
Confidence 34567899999999999997 5789999999999999999987531 23468999999998886
Q ss_pred cCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCC
Q 013274 114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG 192 (446)
Q Consensus 114 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~ 192 (446)
...++.+++.|+.|+.||++..+.++.+.. -..++++..+|. ..+|++|+.|..++|||+++...+..+.||..+
T Consensus 204 -rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT---ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~ 279 (460)
T KOG0285|consen 204 -RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT---LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP 279 (460)
T ss_pred -cCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccc---ceeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence 456999999999999999999998886642 234677777764 458999999999999999999999999999999
Q ss_pred eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272 (446)
Q Consensus 193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (446)
|.+|.+.|-+.. ++|||.|++|++||++.++....
T Consensus 280 V~~V~~~~~dpq-vit~S~D~tvrlWDl~agkt~~t-------------------------------------------- 314 (460)
T KOG0285|consen 280 VASVMCQPTDPQ-VITGSHDSTVRLWDLRAGKTMIT-------------------------------------------- 314 (460)
T ss_pred ceeEEeecCCCc-eEEecCCceEEEeeeccCceeEe--------------------------------------------
Confidence 999999987775 68999999999999987653211
Q ss_pred CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 352 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~ 352 (446)
...|.-.|++++.+|....++|++.|. |+-|++..+.- +.++ .
T Consensus 315 --------------------------------lt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f-~~nl---s 357 (460)
T KOG0285|consen 315 --------------------------------LTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF-LQNL---S 357 (460)
T ss_pred --------------------------------eecccceeeEEecCCchhhhhccCCcc-ceeccCCccch-hhcc---c
Confidence 124566799999999999999999885 99999987632 1111 1
Q ss_pred eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEe-----cc---cccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274 353 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF-----RG---HYEYVNCCCFSSQDQELYTGGNDRQILVW 423 (446)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l-----~g---H~~~v~~~~fSpd~~~lvtgs~D~~v~vW 423 (446)
.+......++.. +..++++++. ..+-.||-.+|-....+ +| -+..|++.+|-..+..|+||..|.+|++|
T Consensus 358 gh~~iintl~~n-sD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 358 GHNAIINTLSVN-SDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred cccceeeeeeec-cCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence 111122223333 3445555544 46778888776543322 12 24568999999999999999999999999
Q ss_pred CCCCC
Q 013274 424 CPSRH 428 (446)
Q Consensus 424 ~~~~~ 428 (446)
.-+.+
T Consensus 437 keDe~ 441 (460)
T KOG0285|consen 437 KEDEH 441 (460)
T ss_pred ecccc
Confidence 66544
No 15
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=242.85 Aligned_cols=285 Identities=22% Similarity=0.346 Sum_probs=228.3
Q ss_pred eEeCCCccceeEEEeecC--CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274 37 EIVSPHKGSINSLQVDLT--EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (446)
Q Consensus 37 ~~~~~H~~~v~~l~~s~~--~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~ 114 (446)
.+..+|+.+|-.|+|||- +|-+|+|++.|+.-.+-+.+++... .++.||+++|++.....
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi-----------------gtfeghkgavw~~~l~~- 69 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI-----------------GTFEGHKGAVWSATLNK- 69 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE-----------------EeeeccCcceeeeecCc-
Confidence 356799999999999853 5789999999999999988887652 24579999999876653
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCe
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGI 193 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v 193 (446)
+..+.||++.|.+.++||.-++..+..|.+...+..++|+.+ ...|++|+.+..++|||++.. .++..+.+|.+.|
T Consensus 70 na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~d---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 70 NATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQD---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEeccc---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 666789999999999999999999999988777777888764 457899999999999999877 4788999999999
Q ss_pred EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG 273 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (446)
..+-|....+. ++|++.|++||+||.|++..++++.
T Consensus 147 r~v~wc~eD~~-iLSSadd~tVRLWD~rTgt~v~sL~------------------------------------------- 182 (334)
T KOG0278|consen 147 RTVLWCHEDKC-ILSSADDKTVRLWDHRTGTEVQSLE------------------------------------------- 182 (334)
T ss_pred eeEEEeccCce-EEeeccCCceEEEEeccCcEEEEEe-------------------------------------------
Confidence 99999988775 6788999999999999987655442
Q ss_pred CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEe
Q 013274 274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL 353 (446)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~ 353 (446)
-..+|+++-+++||.+|. .+..+.|++||..+-.. +...+.
T Consensus 183 ----------------------------------~~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~----lKs~k~ 223 (334)
T KOG0278|consen 183 ----------------------------------FNSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGL----LKSYKM 223 (334)
T ss_pred ----------------------------------cCCCCcceeeccCCCEEE-EecCceeEEeccccccc----eeeccC
Confidence 123588899999998775 45677899999876321 111111
Q ss_pred ecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEe-cccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 354 QTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l-~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
+-....+.+.|+..+++.+.. ..+..+|..+++....+ .||-++|.||.|||||...++||.||+||||...
T Consensus 224 -P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 224 -PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred -ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 112234566777755544433 36788999999998886 9999999999999999999999999999999664
No 16
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.8e-34 Score=261.17 Aligned_cols=291 Identities=19% Similarity=0.291 Sum_probs=241.2
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
..++|+..|++++|.|..+.+|+|+|.|+.|+|||+..... . .++..||..+|.++.|+. ++.
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~-----~-----------lrtf~gH~k~Vrd~~~s~-~g~ 271 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR-----C-----------LRTFKGHRKPVRDASFNN-CGT 271 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc-----e-----------ehhhhcchhhhhhhhccc-cCC
Confidence 46799999999999886789999999999999999865211 0 135579999999999886 889
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~ 197 (446)
.|+|+|.|+.|++||+++|+++..+......+++.+.|+. +..+++|..|+.|+.||+++++.++.+..|-+.|..+.
T Consensus 272 ~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~ 349 (503)
T KOG0282|consen 272 SFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDIT 349 (503)
T ss_pred eeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeE
Confidence 9999999999999999999999999988888999999875 56899999999999999999999999999999999999
Q ss_pred EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277 (446)
Q Consensus 198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (446)
|-+++++ ++|++.|++++||+.+....++.+.
T Consensus 350 F~~~g~r-FissSDdks~riWe~~~~v~ik~i~----------------------------------------------- 381 (503)
T KOG0282|consen 350 FVDEGRR-FISSSDDKSVRIWENRIPVPIKNIA----------------------------------------------- 381 (503)
T ss_pred EccCCce-EeeeccCccEEEEEcCCCccchhhc-----------------------------------------------
Confidence 9999986 7899999999999987543211100
Q ss_pred ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce--eeeeeeEEEeec
Q 013274 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN--TLVNFETVRLQT 355 (446)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~--~~~~~~~~~~~~ 355 (446)
....|. ..+|..+|++++++.-+.|+.|.++.+...-. .-..|+. ....
T Consensus 382 --------------------------~~~~hs--mP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~va 432 (503)
T KOG0282|consen 382 --------------------------DPEMHT--MPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVA 432 (503)
T ss_pred --------------------------chhhcc--CcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eecc
Confidence 001232 56788899999999999999999998653210 0001221 1235
Q ss_pred CCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCC-CCEEEEeeCCCcEEEeC
Q 013274 356 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ-DQELYTGGNDRQILVWC 424 (446)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd-~~~lvtgs~D~~v~vW~ 424 (446)
+..+.+.|+||+.+++++.. +.+..||-.+-+++..+.+|.+.+..+.|+|. ...|||||.||.|++|+
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 67788999999999999855 67899999999999999999999999999997 46799999999999996
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-32 Score=259.72 Aligned_cols=300 Identities=22% Similarity=0.334 Sum_probs=225.7
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
...+|...|.+|.|+ +|.++|++||.|-+++||.++..+.. ....+.||+..|.++.| ..+..
T Consensus 140 ~~~g~fddi~si~Ws-~DSr~l~~gsrD~s~rl~~v~~~k~~---------------~~~~l~gHkd~VvacfF-~~~~~ 202 (893)
T KOG0291|consen 140 TYLGHFDDITSIDWS-DDSRLLVTGSRDLSARLFGVDGNKNL---------------FTYALNGHKDYVVACFF-GANSL 202 (893)
T ss_pred eecCCccceeEEEec-cCCceEEeccccceEEEEEecccccc---------------ceEeccCCCcceEEEEe-ccCcc
Confidence 456899999999998 57899999999999999998754321 01234699999977555 45778
Q ss_pred EEEEEeCCCeEEEEECCC-----------------------Cee---------eEEEecC---CceEEeeeccC------
Q 013274 118 LFVTGSYDHYVKVWDTNC-----------------------TRV---------VMNFKMP---GKVYRTAMSPL------ 156 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~-----------------------~~~---------~~~~~~~---~~~~~~~~~~~------ 156 (446)
.++|-+.||.+.+|.... ++. .+.+-+. .++.+.++++-
T Consensus 203 ~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvv 282 (893)
T KOG0291|consen 203 DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVV 282 (893)
T ss_pred eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEE
Confidence 899999999999997540 000 0000010 11111111110
Q ss_pred ---------------------------------CCCceEEEEeeC-CCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274 157 ---------------------------------AASHMLIAAGTE-DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (446)
Q Consensus 157 ---------------------------------~~~~~~lasgs~-d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~ 202 (446)
...+..||.|+. =|.+-||+..+..++....||...+.+++++|||
T Consensus 283 gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg 362 (893)
T KOG0291|consen 283 GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG 362 (893)
T ss_pred EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC
Confidence 011234566654 3688899998888888889999999999999999
Q ss_pred CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274 203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 282 (446)
Q Consensus 203 ~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (446)
+. +|||+.||.||+||.+.+-|+-++
T Consensus 363 q~-iaTG~eDgKVKvWn~~SgfC~vTF----------------------------------------------------- 388 (893)
T KOG0291|consen 363 QL-IATGAEDGKVKVWNTQSGFCFVTF----------------------------------------------------- 388 (893)
T ss_pred cE-EEeccCCCcEEEEeccCceEEEEe-----------------------------------------------------
Confidence 85 799999999999999887776544
Q ss_pred eeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC---e
Q 013274 283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP---I 359 (446)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~---~ 359 (446)
..|.+.|+++.|+..|+.|++.+-||+||.||+...++ |.+.. ...+ .
T Consensus 389 -----------------------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN----fRTft--~P~p~Qfs 439 (893)
T KOG0291|consen 389 -----------------------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN----FRTFT--SPEPIQFS 439 (893)
T ss_pred -----------------------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce----eeeec--CCCceeee
Confidence 24677899999999999999999999999999987654 33322 1222 3
Q ss_pred EEEEcCCCcEEEEeCCC--ceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC--CCCCcCC
Q 013274 360 QLATTQDPAVVFVPCMT--AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH--ISDGVDA 435 (446)
Q Consensus 360 ~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~--~~~~~~~ 435 (446)
.++..|.+.++..++.+ .+.+|++.+|+++-.|.||+++|.+++|+|++..|||+|+|.|||+|+.=.. ..+.+..
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i 519 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI 519 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee
Confidence 45666778888777664 7899999999999999999999999999999999999999999999987432 4444444
Q ss_pred Cc
Q 013274 436 GP 437 (446)
Q Consensus 436 ~~ 437 (446)
-.
T Consensus 520 ~s 521 (893)
T KOG0291|consen 520 RS 521 (893)
T ss_pred cc
Confidence 33
No 18
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.1e-31 Score=246.31 Aligned_cols=283 Identities=25% Similarity=0.468 Sum_probs=227.3
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+++|.+.|++++|+| ++++|++++.||.|++||+.+.... ....+|...+..+.+.+ +++.
T Consensus 5 ~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~-----------------~~~~~~~~~i~~~~~~~-~~~~ 65 (289)
T cd00200 5 LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELL-----------------RTLKGHTGPVRDVAASA-DGTY 65 (289)
T ss_pred hcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcE-----------------EEEecCCcceeEEEECC-CCCE
Confidence 568999999999997 5789999999999999998764311 11246777787888887 5679
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~ 197 (446)
+++++.|+.|++||+.+++.+..+... ..+..+.+.+. ..++++++.|+.|++||+++++....+..|...+.++.
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD---GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC---CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 999999999999999987666666533 35677777764 45777877899999999999988888999999999999
Q ss_pred EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277 (446)
Q Consensus 198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (446)
|+|++. ++++++.|+.|++||+++++....+
T Consensus 143 ~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~------------------------------------------------ 173 (289)
T cd00200 143 FSPDGT-FVASSSQDGTIKLWDLRTGKCVATL------------------------------------------------ 173 (289)
T ss_pred EcCcCC-EEEEEcCCCcEEEEEccccccceeE------------------------------------------------
Confidence 999866 4677777999999998754322111
Q ss_pred ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC
Q 013274 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 357 (446)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~ 357 (446)
..|.+.+.++.|+|++..+++++.|+.|++||+.+++... ........
T Consensus 174 ----------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~----~~~~~~~~ 221 (289)
T cd00200 174 ----------------------------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG----TLRGHENG 221 (289)
T ss_pred ----------------------------ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec----chhhcCCc
Confidence 1345578999999999999999999999999998754311 11112334
Q ss_pred CeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274 358 PIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 424 (446)
Q Consensus 358 ~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~ 424 (446)
...+.+.+++.+++++. ...+++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++|+
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 55677888877777776 67899999999999999999999999999999999999999999999996
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-32 Score=233.78 Aligned_cols=247 Identities=20% Similarity=0.344 Sum_probs=193.9
Q ss_pred eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
+.++||+..|+.+..++ ++++.+|+|.|+++++||+.+++.. +.+.||...|.++++++ |.
T Consensus 57 r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t-----------------~~f~GH~~dVlsva~s~-dn 117 (315)
T KOG0279|consen 57 RRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGEST-----------------RRFVGHTKDVLSVAFST-DN 117 (315)
T ss_pred eeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEE-----------------EEEEecCCceEEEEecC-CC
Confidence 34789999999999986 7899999999999999999876431 23459999999999987 77
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEec---CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v 193 (446)
.+++|||.|++|++|++.... ..+... .+.+.++.|+|.. +..+|++++.|+.|++||+++-+....+.||++.+
T Consensus 118 ~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~-~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 118 RQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNE-SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV 195 (315)
T ss_pred ceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCC-CCcEEEEccCCceEEEEccCCcchhhccccccccE
Confidence 799999999999999987543 333332 3457888888864 35689999999999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG 273 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (446)
+.+++||||.. .++|+.||.+.+||++.+++++.+
T Consensus 196 ~t~~vSpDGsl-casGgkdg~~~LwdL~~~k~lysl-------------------------------------------- 230 (315)
T KOG0279|consen 196 NTVTVSPDGSL-CASGGKDGEAMLWDLNEGKNLYSL-------------------------------------------- 230 (315)
T ss_pred EEEEECCCCCE-EecCCCCceEEEEEccCCceeEec--------------------------------------------
Confidence 99999999984 689999999999999987765443
Q ss_pred CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE--
Q 013274 274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV-- 351 (446)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~-- 351 (446)
+|...|.+++|+|+.-.|+.+. +..|+|||++++.... .+...
T Consensus 231 ---------------------------------~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~-~l~~d~~ 275 (315)
T KOG0279|consen 231 ---------------------------------EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVE-ELKLDGI 275 (315)
T ss_pred ---------------------------------cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhh-hcccccc
Confidence 3456799999999887776554 5569999999865311 11100
Q ss_pred --EeecCCC--eEEEEcCCCcEEEEeC-CCceEEEEee
Q 013274 352 --RLQTSKP--IQLATTQDPAVVFVPC-MTAVKAFDIW 384 (446)
Q Consensus 352 --~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~d~~ 384 (446)
......+ ..++.++++..+|.+- .+.+++|.+.
T Consensus 276 g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 276 GPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 0111122 3467888999998874 4678888774
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-33 Score=270.10 Aligned_cols=207 Identities=26% Similarity=0.500 Sum_probs=178.2
Q ss_pred eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (446)
Q Consensus 36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~ 115 (446)
.+.+.||+|+|+.++|+| +.++|+|+|+|++||+|.+.+.... +. ..||..+|+.+.|.| .
T Consensus 444 ~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~-------------V~----y~GH~~PVwdV~F~P-~ 504 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCL-------------VI----YKGHLAPVWDVQFAP-R 504 (707)
T ss_pred eEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeE-------------EE----ecCCCcceeeEEecC-C
Confidence 445789999999999997 6789999999999999999876431 11 149999999999886 7
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~ 194 (446)
|-+|||||.|++.++|..+..++++.+.. -+.+.++.|+| +..++|+||.|.+|++||+.+|..++.|.||.++|.
T Consensus 505 GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP---Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 505 GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP---NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVT 581 (707)
T ss_pred ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC---cccccccCCCCceEEEEEcCCCcEEEEecCCCCceE
Confidence 88999999999999999998888876653 23466677776 567999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN 274 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (446)
+++|||+|++ |+||+.||.|++||+.++..+.
T Consensus 582 al~~Sp~Gr~-LaSg~ed~~I~iWDl~~~~~v~----------------------------------------------- 613 (707)
T KOG0263|consen 582 ALAFSPCGRY-LASGDEDGLIKIWDLANGSLVK----------------------------------------------- 613 (707)
T ss_pred EEEEcCCCce-EeecccCCcEEEEEcCCCcchh-----------------------------------------------
Confidence 9999999986 7999999999999998653211
Q ss_pred ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274 275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 341 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~ 341 (446)
...+|.+.|.+|.||.||..||+||.|.+|++||+...
T Consensus 614 -----------------------------~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 614 -----------------------------QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred -----------------------------hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 13478888999999999999999999999999998764
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.2e-33 Score=244.16 Aligned_cols=297 Identities=18% Similarity=0.284 Sum_probs=227.5
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+.+|-.+|+.+-|.| ...++++++.|++|++||..+++.. ....||..+|..+.+.. .|++
T Consensus 104 l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e-----------------~~LrGHt~sv~di~~~a-~Gk~ 164 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELE-----------------RSLRGHTDSVFDISFDA-SGKY 164 (406)
T ss_pred hhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhh-----------------hhhhccccceeEEEEec-CccE
Confidence 346889999999987 4568999999999999999887641 23469999999988876 6899
Q ss_pred EEEEeCCCeEEEEECCCC-eeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274 119 FVTGSYDHYVKVWDTNCT-RVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv 196 (446)
++|+|.|-.+++||..+. ++++.... ...+.++.+-|.+ .++++++.|.+|++|++.++-++.++.+|..-|..+
T Consensus 165 l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g---d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v 241 (406)
T KOG0295|consen 165 LATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG---DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMV 241 (406)
T ss_pred EEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC---CeeeecccccceeEEecccceeEEeccCchHhEEEE
Confidence 999999999999998762 33333322 2235566677654 589999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV 276 (446)
Q Consensus 197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (446)
+.+.|+. +++|++.|.++++|-+.+..|...+......+. + +
T Consensus 242 ~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE--------c-----------------------------i 283 (406)
T KOG0295|consen 242 RVNQDGT-IIASCSNDQTLRVWVVATKQCKAELREHEHPVE--------C-----------------------------I 283 (406)
T ss_pred EecCCee-EEEecCCCceEEEEEeccchhhhhhhccccceE--------E-----------------------------E
Confidence 9998886 789999999999998877655433322111110 0 0
Q ss_pred eecccceeecCCccccccCCCcccccccccccccCeEEEEEc-cCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274 277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-EDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 355 (446)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~ 355 (446)
++.+...+ ..|+.-.-+ ..|.++.+++.|++||+||+.++...+ ++..+.
T Consensus 284 ~wap~~~~-------------------------~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~----tL~ghd 334 (406)
T KOG0295|consen 284 AWAPESSY-------------------------PSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF----TLVGHD 334 (406)
T ss_pred EecccccC-------------------------cchhhccCCCCCccEEEeecccceEEEEeccCCeEEE----EEeccc
Confidence 00000000 000000000 135799999999999999999986533 333344
Q ss_pred CCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274 356 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 424 (446)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~ 424 (446)
+..-.++++|.+.++++.++ .++++||+.++++++++..|+.-|+++.|..+--+++|||-|++++||.
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 55667899999999998766 5899999999999999999999999999999999999999999999995
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-33 Score=266.21 Aligned_cols=251 Identities=25% Similarity=0.448 Sum_probs=207.3
Q ss_pred eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
.++.||+..|.+|.... .|.+|+|||.|.+|++|.++++.... -+ -....||...|.+++.+-...
T Consensus 359 ~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~--------~~-----~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKS--------LC-----VAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred EEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchh--------hh-----hhhhcccccccceeeecccCc
Confidence 37889999999999543 46899999999999999885543210 01 112358999999998866566
Q ss_pred cEEEEEeCCCeEEEEECCCCeee---EEE-------ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVV---MNF-------KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL 186 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l 186 (446)
..|+|+|.|+++++|++...+.. ..+ .+...+++++++| +..++|+||.|.+.+||+++......+|
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~---ndkLiAT~SqDktaKiW~le~~~l~~vL 501 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP---NDKLIATGSQDKTAKIWDLEQLRLLGVL 501 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC---CCceEEecccccceeeecccCceEEEEe
Confidence 79999999999999998652111 111 1234577888877 5579999999999999999988999999
Q ss_pred eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274 187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP 266 (446)
Q Consensus 187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (446)
.||.-.|++|.|+|.++ +++|+|.|++||||.+.+..|+++|
T Consensus 502 sGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~fSClkT~------------------------------------- 543 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTFSCLKTF------------------------------------- 543 (775)
T ss_pred eCCccceEEEEeccccc-eeEeccCCceEEEEEeccceeeeee-------------------------------------
Confidence 99999999999999987 5899999999999999988887665
Q ss_pred cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeee
Q 013274 267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV 346 (446)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~ 346 (446)
.||...|..+.|-.+|+.|+|+++||-+|+|+++++.
T Consensus 544 ---------------------------------------eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e---- 580 (775)
T KOG0319|consen 544 ---------------------------------------EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE---- 580 (775)
T ss_pred ---------------------------------------cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh----
Confidence 3678889999999999999999999999999988653
Q ss_pred eeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 347 NFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
+..+|.+|++.|+.++-+|+..+++||+.|+.|.+|.-.
T Consensus 581 -----------------------------------------C~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 581 -----------------------------------------CEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred -----------------------------------------hhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 235667899999999999999999999999999999543
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=262.10 Aligned_cols=264 Identities=20% Similarity=0.358 Sum_probs=205.3
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
..+|...+++++++| ||++||||++||+|+|||...+.++ .++..|+.+|+.+.|.. .+..
T Consensus 346 QQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~-----------------vTFteHts~Vt~v~f~~-~g~~ 406 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCF-----------------VTFTEHTSGVTAVQFTA-RGNV 406 (893)
T ss_pred ccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEE-----------------EEeccCCCceEEEEEEe-cCCE
Confidence 458999999999997 6899999999999999999876542 23468999999988876 7889
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC-cEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-QVRLCDIASGAISQTLSGHRDGIMTVE 197 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~-~v~vwd~~~~~~~~~l~~h~~~v~sv~ 197 (446)
++|+|.||+||.||+.....-++|+.+.++...+++.+ +++.++.+|+.|. .|++|++++|+++..|.||.++|.+++
T Consensus 407 llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD-~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD-PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS 485 (893)
T ss_pred EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc-CCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE
Confidence 99999999999999999999999998887654444433 3456777777664 799999999999999999999999999
Q ss_pred EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277 (446)
Q Consensus 198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (446)
|+|.+. .|+|+|+|.+||+||+-.... +
T Consensus 486 f~~~~~-~LaS~SWDkTVRiW~if~s~~--------~------------------------------------------- 513 (893)
T KOG0291|consen 486 FSPDGS-LLASGSWDKTVRIWDIFSSSG--------T------------------------------------------- 513 (893)
T ss_pred EccccC-eEEeccccceEEEEEeeccCc--------e-------------------------------------------
Confidence 999998 589999999999999742100 0
Q ss_pred ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC
Q 013274 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 357 (446)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~ 357 (446)
.....+...+..++|+|||+.|++++.||.|.+||+..+.+. ..++...
T Consensus 514 -------------------------vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~-~~Idgrk----- 562 (893)
T KOG0291|consen 514 -------------------------VETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV-GSIDGRK----- 562 (893)
T ss_pred -------------------------eeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee-ccccchh-----
Confidence 001123445899999999999999999999999999865321 1111100
Q ss_pred CeEEEEcCCCcEEEEeCCCceEEEEeecCc-----eEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 358 PIQLATTQDPAVVFVPCMTAVKAFDIWSGK-----TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
|+..++ ....-....+..+.+++|+||..+++|+..+.|+++++....
T Consensus 563 ------------------------D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 563 ------------------------DLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred ------------------------hccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 000000 001112334678999999999999999999999999987553
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.7e-32 Score=264.96 Aligned_cols=290 Identities=24% Similarity=0.424 Sum_probs=229.1
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~ 120 (446)
.|..+|.++.|++ +|++|++++.|+.|++|+..+... ...+...+|...|.++.|+| ++.+++
T Consensus 157 ~~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~---------------~~~~~l~~h~~~v~~~~fs~-d~~~l~ 219 (456)
T KOG0266|consen 157 HECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKS---------------NLLRELSGHTRGVSDVAFSP-DGSYLL 219 (456)
T ss_pred cccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccc---------------hhhccccccccceeeeEECC-CCcEEE
Confidence 3478999999997 678899999999999999854431 00122358999999999998 788999
Q ss_pred EEeCCCeEEEEEC-CCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 121 TGSYDHYVKVWDT-NCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 121 s~s~D~~i~iWd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
+++.|++|+|||+ ..+..++.+. +...+++++|.+.+ .++++|+.|++|++||++++++...+.+|.+.|++++|
T Consensus 220 s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g---~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 220 SGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG---NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred EecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC---CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 9999999999999 4457777775 45567888888864 58999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCc--eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV 276 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (446)
++++.. |++++.|+.|++||+.++. |...+..
T Consensus 297 ~~d~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~--------------------------------------------- 330 (456)
T KOG0266|consen 297 SPDGNL-LVSASYDGTIRVWDLETGSKLCLKLLSG--------------------------------------------- 330 (456)
T ss_pred CCCCCE-EEEcCCCccEEEEECCCCceeeeecccC---------------------------------------------
Confidence 999985 7889999999999998765 2111100
Q ss_pred eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274 277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 356 (446)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~ 356 (446)
..... +++.+.|+|+|.||++++.|+++++||+..++.... +.......-
T Consensus 331 ----------------------------~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~-~~~~~~~~~ 380 (456)
T KOG0266|consen 331 ----------------------------AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT-YTGHSNLVR 380 (456)
T ss_pred ----------------------------CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee-ecccCCcce
Confidence 00112 589999999999999999999999999998754221 111100000
Q ss_pred CCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEeccc-ccceEEEEEcCCCCEEEEee--CCCcEEEeCCC
Q 013274 357 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH-YEYVNCCCFSSQDQELYTGG--NDRQILVWCPS 426 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH-~~~v~~~~fSpd~~~lvtgs--~D~~v~vW~~~ 426 (446)
........+.+..++++.. ..+.+|++.++..+..+.+| ...+..++++|...++++++ .|+.+++|..+
T Consensus 381 ~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 381 CIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 1112233556677777654 58999999999999999999 99999999999999999988 79999999764
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.3e-32 Score=245.78 Aligned_cols=302 Identities=19% Similarity=0.297 Sum_probs=223.5
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~ 120 (446)
+|...|.+.+|+|....++++|+.|.+.++|++......-......+|. +... .....-...|+++.|+. +|..||
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~-~~~~--~~s~~~nkdVT~L~Wn~-~G~~La 251 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHC-IREG--GKSVPSNKDVTSLDWNN-DGTLLA 251 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhh-hhhh--cccCCccCCcceEEecC-CCCeEE
Confidence 4999999999998766689999999999999986411100000001111 0000 00012235799999986 799999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEec
Q 013274 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST 200 (446)
Q Consensus 121 s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~ 200 (446)
+|+.||.+|+|+.........-.+.+++.++.+... +.+|++++.|+++.+||..++..-+.+.-|..+-..|.|-.
T Consensus 252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~---G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~ 328 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKK---GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS 328 (524)
T ss_pred EeecCcEEEEEecCchhhhhhhccCCceEEEEEcCC---CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec
Confidence 999999999999875443333345678888888764 45899999999999999999998888888988878888876
Q ss_pred CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274 201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 280 (446)
Q Consensus 201 ~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (446)
+.+ |++++.|+.|+++.+......
T Consensus 329 ~~~--F~ts~td~~i~V~kv~~~~P~------------------------------------------------------ 352 (524)
T KOG0273|consen 329 NDE--FATSSTDGCIHVCKVGEDRPV------------------------------------------------------ 352 (524)
T ss_pred Cce--EeecCCCceEEEEEecCCCcc------------------------------------------------------
Confidence 543 799999999999976432110
Q ss_pred cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeE
Q 013274 281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ 360 (446)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~ 360 (446)
....+|.++|.+|.|.|.|.+|+|+|.|+++|||........ ..+..+....+.
T Consensus 353 ----------------------~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~----~~l~~Hskei~t 406 (524)
T KOG0273|consen 353 ----------------------KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV----HDLQAHSKEIYT 406 (524)
T ss_pred ----------------------eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch----hhhhhhccceee
Confidence 123579999999999999999999999999999997654321 111111111222
Q ss_pred EEEcC---------CCcEEEE-eCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274 361 LATTQ---------DPAVVFV-PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 430 (446)
Q Consensus 361 ~~~~~---------~~~~~~~-~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~ 430 (446)
+..+| ...++++ +..+.+++||+..+.++++|..|..+|.+|+|||||++|+||+.|+.|.+|+....++
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 22222 2233444 4557899999999999999999999999999999999999999999999999887754
Q ss_pred C
Q 013274 431 D 431 (446)
Q Consensus 431 ~ 431 (446)
=
T Consensus 487 ~ 487 (524)
T KOG0273|consen 487 V 487 (524)
T ss_pred e
Confidence 3
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.4e-33 Score=248.55 Aligned_cols=280 Identities=18% Similarity=0.310 Sum_probs=216.8
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s 123 (446)
-+|+.|+|.| +|+.|++|+..|...|||...- ..+.-.+.|...|.++.|++ ++.+++||+
T Consensus 97 c~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~f-----------------nFEtilQaHDs~Vr~m~ws~-~g~wmiSgD 157 (464)
T KOG0284|consen 97 CPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSF-----------------NFETILQAHDSPVRTMKWSH-NGTWMISGD 157 (464)
T ss_pred cceeeEEEcC-CCceeEeecccccEEEecCcee-----------------eHHHHhhhhcccceeEEEcc-CCCEEEEcC
Confidence 4799999986 7899999999999999997421 01112368999999999987 889999999
Q ss_pred CCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274 124 YDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (446)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~ 202 (446)
.||.|++|+.+-..+.....+. ..+..++|+|. ...|+++|.|+.|+|||....+.-..|.||.-.|.++.|.|..
T Consensus 158 ~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpn---DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 158 KGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPN---DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK 234 (464)
T ss_pred CCceEEecccchhhhHHhhHhhhhhhheeccCCC---CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc
Confidence 9999999998643332222222 45778888873 3478999999999999999988888899999999999999987
Q ss_pred CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274 203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 282 (446)
Q Consensus 203 ~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (446)
. +++|||.|+.|++||.|++.|+.++
T Consensus 235 g-LiasgskDnlVKlWDprSg~cl~tl----------------------------------------------------- 260 (464)
T KOG0284|consen 235 G-LIASGSKDNLVKLWDPRSGSCLATL----------------------------------------------------- 260 (464)
T ss_pred c-eeEEccCCceeEeecCCCcchhhhh-----------------------------------------------------
Confidence 6 5799999999999999998764322
Q ss_pred eeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEE
Q 013274 283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA 362 (446)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (446)
.+|...|.++.|++++.+|+|+|.|..++++|+++-+..+ ..+.+......+.
T Consensus 261 -----------------------h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~----~~r~Hkkdv~~~~ 313 (464)
T KOG0284|consen 261 -----------------------HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF----TYRGHKKDVTSLT 313 (464)
T ss_pred -----------------------hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH----Hhhcchhhheeec
Confidence 3577789999999999999999999999999998543211 1111122233344
Q ss_pred EcCC-CcEEEEeCC-CceEEEEeecCceEE-EecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 363 TTQD-PAVVFVPCM-TAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 363 ~~~~-~~~~~~~~~-~~~~~~d~~~~~~~~-~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
..|- ..++.+++. ..+..|.+...+.+. .-.+|.+.|++++|+|-|..|+|||.|+++|.|.=.
T Consensus 314 WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 314 WHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 4443 334444443 577888876444433 446899999999999999999999999999999554
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.8e-31 Score=224.10 Aligned_cols=288 Identities=18% Similarity=0.279 Sum_probs=210.9
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
.+.+|++.|+.++|+|--|..|+|+|.|++||+|++..+.... ..- ....+|+..|.+++|+| .++
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~---------ck~----vld~~hkrsVRsvAwsp-~g~ 74 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWT---------CKT----VLDDGHKRSVRSVAWSP-HGR 74 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEE---------EEE----eccccchheeeeeeecC-CCc
Confidence 4679999999999997437799999999999999987432111 111 11258999999999998 688
Q ss_pred EEEEEeCCCeEEEEECCCCee--eEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC---ceeeeeeCCCC
Q 013274 118 LFVTGSYDHYVKVWDTNCTRV--VMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG---AISQTLSGHRD 191 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~---~~~~~l~~h~~ 191 (446)
+||+||.|.++-||.-..+.. +.++.. ...+-++++++. +.+||+++.|.+|-||.+..+ .++..|.+|..
T Consensus 75 ~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s---G~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS---GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC---CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 999999999999998765543 333332 233677888774 569999999999999999754 46778999999
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA 271 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (446)
.|..|.|+|... +|+|+|-|++||+|+-.....
T Consensus 152 DVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~ddd---------------------------------------------- 184 (312)
T KOG0645|consen 152 DVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDD---------------------------------------------- 184 (312)
T ss_pred cccEEEEcCCcc-eeEEeccCCeEEEEeecCCCC----------------------------------------------
Confidence 999999999765 689999999999997431110
Q ss_pred CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274 272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 351 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~ 351 (446)
+...+.+.+|.+.|.+++|++.|..|++++.|++++||-..+.-..
T Consensus 185 ---------------------------W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~------- 230 (312)
T KOG0645|consen 185 ---------------------------WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG------- 230 (312)
T ss_pred ---------------------------eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch-------
Confidence 0000113467778999999999999999999999999975432110
Q ss_pred EeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeecCc------e-EEEecccccceEEEEEcCC-CCEEEEeeCCCcEEE
Q 013274 352 RLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGK------T-CLTFRGHYEYVNCCCFSSQ-DQELYTGGNDRQILV 422 (446)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~------~-~~~l~gH~~~v~~~~fSpd-~~~lvtgs~D~~v~v 422 (446)
.+....+.++.. ++ .++++ +...++++...+.. + ...-..|...|++++|.|. ..+|+|||.||.|++
T Consensus 231 -~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 231 -MHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred -hcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 001112223333 33 34444 44677888765431 1 1233579999999999995 788999999999999
Q ss_pred eCCC
Q 013274 423 WCPS 426 (446)
Q Consensus 423 W~~~ 426 (446)
|.+.
T Consensus 308 W~l~ 311 (312)
T KOG0645|consen 308 WELE 311 (312)
T ss_pred EEec
Confidence 9764
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.1e-33 Score=243.92 Aligned_cols=281 Identities=22% Similarity=0.361 Sum_probs=208.5
Q ss_pred CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (446)
Q Consensus 42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s 121 (446)
...+|+|++++ |+ .++||..|.+|+|||.++..+. ..+.||++.|.|+.+ +...++|
T Consensus 196 ~skgVYClQYD--D~-kiVSGlrDnTikiWD~n~~~c~-----------------~~L~GHtGSVLCLqy---d~rviis 252 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DE-KIVSGLRDNTIKIWDKNSLECL-----------------KILTGHTGSVLCLQY---DERVIVS 252 (499)
T ss_pred cCCceEEEEec--ch-hhhcccccCceEEeccccHHHH-----------------HhhhcCCCcEEeeec---cceEEEe
Confidence 45789999994 44 5999999999999998765431 234699999998776 5669999
Q ss_pred EeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---eeeeeeCCCCCeEEEE
Q 013274 122 GSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHRDGIMTVE 197 (446)
Q Consensus 122 ~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~---~~~~l~~h~~~v~sv~ 197 (446)
||.|.+|++||+++++++.++-++ ..+..+.|+ ..+++++|.|.++.+||+.... +.+.+.||.+.|..|.
T Consensus 253 GSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVd 327 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 327 (499)
T ss_pred cCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeec
Confidence 999999999999999998766432 234444443 2478899999999999998774 3467889999999999
Q ss_pred EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277 (446)
Q Consensus 198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (446)
|+ .++ ++|+|.|.+|++|++.+..+++++.
T Consensus 328 fd--~ky-IVsASgDRTikvW~~st~efvRtl~----------------------------------------------- 357 (499)
T KOG0281|consen 328 FD--DKY-IVSASGDRTIKVWSTSTCEFVRTLN----------------------------------------------- 357 (499)
T ss_pred cc--cce-EEEecCCceEEEEeccceeeehhhh-----------------------------------------------
Confidence 96 355 7999999999999999887765542
Q ss_pred ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC
Q 013274 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 357 (446)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~ 357 (446)
+|...|.|+-+ .|++++|||.|.+||+||++.|....+ ++ .+..-
T Consensus 358 -----------------------------gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv-Le---GHEeL 402 (499)
T KOG0281|consen 358 -----------------------------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV-LE---GHEEL 402 (499)
T ss_pred -----------------------------cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH-Hh---chHHh
Confidence 44444665554 478999999999999999998864321 11 11111
Q ss_pred CeEEEEcCCCcEEEEeCCCceEEEEeecCc---------eEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 358 PIQLATTQDPAVVFVPCMTAVKAFDIWSGK---------TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
.-.+.| .+..++..+-++.+++||+.++. ++.++.-|++.|..+.| |...+++++.|.+|.||+-...
T Consensus 403 vRciRF-d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 403 VRCIRF-DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred hhheee-cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 111222 23334444456789999987653 24577889999999999 7889999999999999988665
Q ss_pred CCCCcCCCcc
Q 013274 429 ISDGVDAGPM 438 (446)
Q Consensus 429 ~~~~~~~~~~ 438 (446)
....-..++-
T Consensus 480 ~~~~~~~~r~ 489 (499)
T KOG0281|consen 480 PPSAAEETRS 489 (499)
T ss_pred CccccccCCC
Confidence 5554444443
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-30 Score=273.91 Aligned_cols=296 Identities=16% Similarity=0.277 Sum_probs=219.1
Q ss_pred CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
..|.+.|.+++|++ ++++||||+.|++|+|||++...... . ..+.++... .+...|.++.|.+.++.+|
T Consensus 480 ~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~---~-~~~~~~~~~------~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 480 LNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDG---R-DIHYPVVEL------ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred cCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccc---c-ccccceEEe------cccCceeeEEeccCCCCEE
Confidence 35999999999997 67899999999999999976421100 0 001111111 2345688889988778899
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 120 VTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
++++.|++|++||+.+++.+..+. +.+.+.++++++. +..+|++|+.|+.|++||++++..+..+..| ..|.++.|
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~--~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~ 625 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA--DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQF 625 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC--CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEE
Confidence 999999999999999988877765 4456888888863 2358999999999999999999888888755 67999999
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (446)
+++....|++|+.||.|++||+++....
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~---------------------------------------------------- 653 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLP---------------------------------------------------- 653 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCcc----------------------------------------------------
Confidence 6543346899999999999998753200
Q ss_pred cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCcee--eeeeeEEEeecC
Q 013274 279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT--LVNFETVRLQTS 356 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~--~~~~~~~~~~~~ 356 (446)
.....+|...|.++.|. ++.+|+|++.|++|++||+..+... ...+..+..+..
T Consensus 654 -----------------------~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 654 -----------------------LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN 709 (793)
T ss_pred -----------------------ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence 00113577889999997 7889999999999999999753210 001112222233
Q ss_pred CCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEE-------------EecccccceEEEEEcCCCCEEEEeeCCCcEEE
Q 013274 357 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCL-------------TFRGHYEYVNCCCFSSQDQELYTGGNDRQILV 422 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~-------------~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~v 422 (446)
....+.+++++.++++++. ..+.+|+........ .+..|...|.+++|+|++..|++|+.||+|+|
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i 789 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI 789 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence 4456778888888877754 688999975443221 12346678999999999999999999999999
Q ss_pred eCC
Q 013274 423 WCP 425 (446)
Q Consensus 423 W~~ 425 (446)
|++
T Consensus 790 ~~~ 792 (793)
T PLN00181 790 LEM 792 (793)
T ss_pred Eec
Confidence 975
No 30
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-31 Score=227.68 Aligned_cols=286 Identities=21% Similarity=0.278 Sum_probs=219.1
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
.++||..+++.|.++ .+|++|.|++.|.++.||-.-+++.. .+..||+++|+|+...- +.+
T Consensus 5 ~l~GHERplTqiKyN-~eGDLlFscaKD~~~~vw~s~nGerl-----------------Gty~GHtGavW~~Did~-~s~ 65 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYN-REGDLLFSCAKDSTPTVWYSLNGERL-----------------GTYDGHTGAVWCCDIDW-DSK 65 (327)
T ss_pred ccccCccccceEEec-CCCcEEEEecCCCCceEEEecCCcee-----------------eeecCCCceEEEEEecC-Ccc
Confidence 367999999999998 47899999999999999975444321 23469999999988765 678
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee-----CCCcEEEEeCC-------CCceeee
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT-----EDVQVRLCDIA-------SGAISQT 185 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs-----~d~~v~vwd~~-------~~~~~~~ 185 (446)
.++|||.|.++++||+++|+++.++..+..+..+.|++.+ .+++... ..+.|.++|++ ...+...
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~g---n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGG---NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCC---cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 9999999999999999999999999988888888888753 3444433 34579999997 3456778
Q ss_pred eeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCC
Q 013274 186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRA 265 (446)
Q Consensus 186 l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (446)
+..+...++.+-|.|-++. |++|..||.|.+||++++..+--
T Consensus 143 I~t~~skit~a~Wg~l~~~-ii~Ghe~G~is~~da~~g~~~v~------------------------------------- 184 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGET-IIAGHEDGSISIYDARTGKELVD------------------------------------- 184 (327)
T ss_pred ecCCccceeeeeecccCCE-EEEecCCCcEEEEEcccCceeee-------------------------------------
Confidence 8888899999999999985 78999999999999998642100
Q ss_pred ccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceee
Q 013274 266 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 345 (446)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~ 345 (446)
....|...|+.|.|++|..+++|++.|.+.++||+.+-.. +
T Consensus 185 --------------------------------------s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v-~ 225 (327)
T KOG0643|consen 185 --------------------------------------SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV-L 225 (327)
T ss_pred --------------------------------------chhhhccccccccccCCcceEEecccCccceeeeccceee-E
Confidence 0124666799999999999999999999999999987432 1
Q ss_pred eeeeEEEeecCCCeEEEEcCCCcEEEEeCCCc---------------eEEEEeecCceEEEecccccceEEEEEcCCCCE
Q 013274 346 VNFETVRLQTSKPIQLATTQDPAVVFVPCMTA---------------VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE 410 (446)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~ 410 (446)
..+.+ ..+...++.+|-...+.++++.. .+.+++--.+....+.||-++|++|+|+|||+.
T Consensus 226 Kty~t----e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks 301 (327)
T KOG0643|consen 226 KTYTT----ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS 301 (327)
T ss_pred EEeee----cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence 11211 12334466677655555544321 112222223345677899999999999999999
Q ss_pred EEEeeCCCcEEEeCCC
Q 013274 411 LYTGGNDRQILVWCPS 426 (446)
Q Consensus 411 lvtgs~D~~v~vW~~~ 426 (446)
.+||++||.|||..-+
T Consensus 302 YsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 302 YSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccCCCCceEEEEEec
Confidence 9999999999997443
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.7e-31 Score=239.11 Aligned_cols=277 Identities=19% Similarity=0.347 Sum_probs=228.4
Q ss_pred ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (446)
Q Consensus 43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~ 122 (446)
+..|++|+|+ .+|.+||+|+.||.+++||...... .++.-|+++|.++.|.- .+.+++++
T Consensus 235 nkdVT~L~Wn-~~G~~LatG~~~G~~riw~~~G~l~------------------~tl~~HkgPI~slKWnk-~G~yilS~ 294 (524)
T KOG0273|consen 235 NKDVTSLDWN-NDGTLLATGSEDGEARIWNKDGNLI------------------STLGQHKGPIFSLKWNK-KGTYILSG 294 (524)
T ss_pred cCCcceEEec-CCCCeEEEeecCcEEEEEecCchhh------------------hhhhccCCceEEEEEcC-CCCEEEec
Confidence 3679999998 5789999999999999999753211 23357999999999986 78899999
Q ss_pred eCCCeEEEEECCCCeeeEEEecCCce-EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecC
Q 013274 123 SYDHYVKVWDTNCTRVVMNFKMPGKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS 201 (446)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~ 201 (446)
+-|+++.+||..++++...+.+.... ..+.+.. ..-|++++.|+.|+|+-+....++.++.||.++|.++.|+|.
T Consensus 295 ~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~----~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t 370 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS----NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT 370 (524)
T ss_pred cCCccEEEEeccCceEEEeeeeccCCccceEEec----CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC
Confidence 99999999999999988888765433 3344433 345899999999999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 281 (446)
Q Consensus 202 ~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (446)
+. +|+|+|.|++++||.+....++..+
T Consensus 371 g~-LLaS~SdD~TlkiWs~~~~~~~~~l---------------------------------------------------- 397 (524)
T KOG0273|consen 371 GS-LLASCSDDGTLKIWSMGQSNSVHDL---------------------------------------------------- 397 (524)
T ss_pred Cc-eEEEecCCCeeEeeecCCCcchhhh----------------------------------------------------
Confidence 87 6899999999999997655433222
Q ss_pred ceeecCCccccccCCCcccccccccccccCeEEEEEccCC---------CEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274 282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG---------MYLLSAGSDSRIRLWDVESGRNTLVNFETVR 352 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg---------~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~ 352 (446)
.+|...|..+.|+|+| ..|++++.|++|++||+..+.+.. .+.
T Consensus 398 ------------------------~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~----~f~ 449 (524)
T KOG0273|consen 398 ------------------------QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH----TLM 449 (524)
T ss_pred ------------------------hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE----eec
Confidence 3455556666666654 579999999999999999886533 344
Q ss_pred eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274 353 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
.+..+++.++++|++.+++++.. ..+.+|+..++++++.+.+-.+ |..|+|+.+|.+|..+-.|+.++|-++
T Consensus 450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~-Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG-IFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe-EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 45778899999999999999865 5789999999999999987654 999999999999999999999998765
No 32
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-32 Score=243.74 Aligned_cols=292 Identities=20% Similarity=0.339 Sum_probs=220.8
Q ss_pred eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
.++..|+..|+=++||+ +|++|||||.|.+..+|++-....++ -..+..||..+|..+.|+| |.
T Consensus 218 qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~k--------------l~~tlvgh~~~V~yi~wSP-Dd 281 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFK--------------LKKTLVGHSQPVSYIMWSP-DD 281 (519)
T ss_pred hhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCccee--------------eeeeeecccCceEEEEECC-CC
Confidence 35678999999999985 79999999999999999975433211 1235579999999999998 66
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEecC--CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC-CCe
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DGI 193 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~-~~v 193 (446)
.+|++|+-|..+++||+.++.....++.. ..+.+.++.|++ ..+++|+.|+.+..||++... ....++-. ..|
T Consensus 282 ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg---~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v 357 (519)
T KOG0293|consen 282 RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG---FRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKV 357 (519)
T ss_pred CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC---ceeEecCCCCcEEEecCCcch-hhccccccccee
Confidence 79999999999999999999988877654 335566777754 469999999999999997543 33333332 458
Q ss_pred EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG 273 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (446)
..++..+||+++ ++...|..|++++..+..+...
T Consensus 358 ~dlait~Dgk~v-l~v~~d~~i~l~~~e~~~dr~l--------------------------------------------- 391 (519)
T KOG0293|consen 358 HDLAITYDGKYV-LLVTVDKKIRLYNREARVDRGL--------------------------------------------- 391 (519)
T ss_pred EEEEEcCCCcEE-EEEecccceeeechhhhhhhcc---------------------------------------------
Confidence 999999999985 5666899999998654221100
Q ss_pred CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEe
Q 013274 274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL 353 (446)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~ 353 (446)
..-..+|++...|.||+++++.=.+..+++||++..+. ...+...+
T Consensus 392 --------------------------------ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l-v~kY~Ghk- 437 (519)
T KOG0293|consen 392 --------------------------------ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL-VRKYFGHK- 437 (519)
T ss_pred --------------------------------ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH-HHHhhccc-
Confidence 01134699999999999999999999999999985321 11111111
Q ss_pred ecCCCeEEEEcC-CCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCC-CEEEEeeCCCcEEEeCCCCC
Q 013274 354 QTSKPIQLATTQ-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 354 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~-~~lvtgs~D~~v~vW~~~~~ 428 (446)
+....+..+|.- +...+++++. +.+.+|+..+++++.+|.||...|+||+|+|.. .++||+|.||+||||.+...
T Consensus 438 q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 438 QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 111233334432 3356666654 579999999999999999999999999999964 77999999999999988643
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-31 Score=234.72 Aligned_cols=244 Identities=23% Similarity=0.402 Sum_probs=206.1
Q ss_pred ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (446)
Q Consensus 99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~ 177 (446)
..||.+-|.|+.+-|. ++.|+|||.|++|+|||++++++..+++ +-..+..++++.. +.++.+++.|+.|+-||+
T Consensus 147 i~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r---HpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR---HPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc---CceEEEecCCCeeEEEec
Confidence 3699999999999884 6799999999999999999999887766 3344566677764 568999999999999999
Q ss_pred CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ 257 (446)
Q Consensus 178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (446)
+.++.++.+.||-..|.+++..|.-. +|+||+.|.++|+||+|+.-.+.
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~------------------------------ 271 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVH------------------------------ 271 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEE------------------------------
Confidence 99999999999999999999999876 58999999999999999742111
Q ss_pred CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274 258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 337 (446)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd 337 (446)
...||..+|..|.+.|-...++|||.|++|++||
T Consensus 272 ----------------------------------------------~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 272 ----------------------------------------------VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred ----------------------------------------------EecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 1257999999999999888899999999999999
Q ss_pred cCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC
Q 013274 338 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 417 (446)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D 417 (446)
+..++.... +..+......++..|....+++++.+.++.|++-.|..+..+.+|+..|++++...|+ ++++|++.
T Consensus 306 l~agkt~~t----lt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dn 380 (460)
T KOG0285|consen 306 LRAGKTMIT----LTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDN 380 (460)
T ss_pred eccCceeEe----eecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCc
Confidence 998874322 2222234455677788788888888999999999999999999999999999998886 78899999
Q ss_pred CcEEEeCCCCC
Q 013274 418 RQILVWCPSRH 428 (446)
Q Consensus 418 ~~v~vW~~~~~ 428 (446)
|.+..|+...+
T Consensus 381 g~~~fwdwksg 391 (460)
T KOG0285|consen 381 GSIMFWDWKSG 391 (460)
T ss_pred eEEEEEecCcC
Confidence 99999999754
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.9e-31 Score=250.31 Aligned_cols=292 Identities=18% Similarity=0.298 Sum_probs=215.4
Q ss_pred cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC
Q 013274 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS 179 (446)
Q Consensus 100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~ 179 (446)
.||...|.++.++. +...++||+. +++++|+..+.++++++++. -+.+..|.| +..+++.|...|.+.+||+.+
T Consensus 370 ~GHR~dVRsl~vS~-d~~~~~Sga~-~SikiWn~~t~kciRTi~~~-y~l~~~Fvp---gd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSS-DSILLASGAG-ESIKIWNRDTLKCIRTITCG-YILASKFVP---GDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred ccchhheeEEEeec-CceeeeecCC-CcEEEEEccCcceeEEeccc-cEEEEEecC---CCceEEEeccCCceEEEEeeh
Confidence 58999999998876 5656676654 68999999999999999865 444555555 456899999999999999999
Q ss_pred CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS 259 (446)
Q Consensus 180 ~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (446)
...+.+++.|.+.+++++.+|+++. ++|||.|.+|++||..-- .. ..|..... .
T Consensus 444 ~~l~Eti~AHdgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~------~~---~~gt~~k~----------------l 497 (888)
T KOG0306|consen 444 ASLVETIRAHDGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLV------VS---VPGTQKKV----------------L 497 (888)
T ss_pred hhhhhhhhccccceeeeeecCCCCc-eEEecCCcEEEEEeEEEE------ec---cCccccee----------------e
Confidence 9999999999999999999999997 689999999999997421 00 00000000 0
Q ss_pred CcCCCCccccccCCCceeecccceeecCCccccccCCC---cccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274 260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG---MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 336 (446)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW 336 (446)
............+..++..+|.+++.+.+..+..+... .+...-.+-||.-||.||..|||++.++|||.|++|++|
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 00000111111223345666666666555444333211 111122356999999999999999999999999999999
Q ss_pred ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEee
Q 013274 337 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG 415 (446)
Q Consensus 337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs 415 (446)
-+.-|.+..- +..+....+.+.|-|.....|.++- ..++.||-.+.+...+|.||...|+|++.+|+|++++|+|
T Consensus 578 GLdFGDCHKS----~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 578 GLDFGDCHKS----FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred ccccchhhhh----hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 8877665321 1123345677888886666555544 4789999999999999999999999999999999999999
Q ss_pred CCCcEEEeCCCC
Q 013274 416 NDRQILVWCPSR 427 (446)
Q Consensus 416 ~D~~v~vW~~~~ 427 (446)
.|.+||+|.-..
T Consensus 654 hD~sIRlwE~td 665 (888)
T KOG0306|consen 654 HDKSIRLWERTD 665 (888)
T ss_pred CCceeEeeeccC
Confidence 999999997653
No 35
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-31 Score=226.32 Aligned_cols=246 Identities=27% Similarity=0.440 Sum_probs=202.6
Q ss_pred ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (446)
Q Consensus 43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~ 122 (446)
+..++.++|++..++.+++++.||+++|||+..... ++ +..+.|+.+|.++.+.+.++..++++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-----------Pi-----~~~kEH~~EV~Svdwn~~~r~~~lts 123 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-----------PI-----HKFKEHKREVYSVDWNTVRRRIFLTS 123 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-----------ch-----hHHHhhhhheEEeccccccceeEEee
Confidence 478999999998889999999999999999653321 11 22357999999999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecC
Q 013274 123 SYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS 201 (446)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~ 201 (446)
|+|++||+|+...+.-++++.. ...++...++|..+ .+++++|.|+.+++||++.......++.|..++.+..|+.-
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~--nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky 201 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP--NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY 201 (311)
T ss_pred ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC--CeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccccc
Confidence 9999999999998888888764 34588899999765 58999999999999999876555669999999999999999
Q ss_pred CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 281 (446)
Q Consensus 202 ~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (446)
+.++++||+.|+.||.||+|+.+.
T Consensus 202 ~~~vl~Tg~vd~~vr~wDir~~r~-------------------------------------------------------- 225 (311)
T KOG0277|consen 202 NHNVLATGGVDNLVRGWDIRNLRT-------------------------------------------------------- 225 (311)
T ss_pred CCcEEEecCCCceEEEEehhhccc--------------------------------------------------------
Confidence 899999999999999999986320
Q ss_pred ceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeE
Q 013274 282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ 360 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~ 360 (446)
+...+.+|.-+|+.|+|||.. ..|+|++-|-++||||...+...
T Consensus 226 -------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~---------------- 270 (311)
T KOG0277|consen 226 -------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA---------------- 270 (311)
T ss_pred -------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh----------------
Confidence 000124788889999999975 57899999999999998754210
Q ss_pred EEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcC-CCCEEEEeeCCCcEEEeCC
Q 013274 361 LATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp-d~~~lvtgs~D~~v~vW~~ 425 (446)
+.+..-|+.-|-.+.||+ +..++|+++.|..+.||+|
T Consensus 271 ----------------------------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 271 ----------------------------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ----------------------------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 112234777788888886 5789999999999999997
No 36
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=232.09 Aligned_cols=299 Identities=23% Similarity=0.389 Sum_probs=225.9
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCc------CCCCCCccccccceEEeccccccCccccEeEEEEe
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT------DYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWY 112 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~ 112 (446)
++.|++++.+.+|++ ||.+++|||.|-+|+|.|++..- ....+. .....++ ..++..|..+|+++.|+
T Consensus 108 lt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~-~qa~hPv----IRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGD-TQARHPV----IRTLYDHVDEVNDLDFH 181 (430)
T ss_pred EeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCC-cccCCce----EeehhhccCcccceeec
Confidence 578999999999996 78999999999999999987321 111100 0111122 23567899999999999
Q ss_pred ecCCcEEEEEeCCCeEEEEECCCCeeeE---EEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee---
Q 013274 113 PVDTGLFVTGSYDHYVKVWDTNCTRVVM---NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--- 186 (446)
Q Consensus 113 ~~~~~~l~s~s~D~~i~iWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l--- 186 (446)
| ...+|+||+.|++|+++|.......+ .++-...+.+++|+|. +.+|+.|.....+++||+++-.+...-
T Consensus 182 P-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs---GefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 182 P-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS---GEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred c-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC---CceEEEecCCCceeEEeccceeEeeecCcc
Confidence 8 56799999999999999987554332 2333456778888874 468899999999999999987654332
Q ss_pred eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274 187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP 266 (446)
Q Consensus 187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (446)
.+|.+.|++|.+++.++ +.+|+|.||.|+|||--.+.|++.|.
T Consensus 258 ~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~------------------------------------ 300 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIG------------------------------------ 300 (430)
T ss_pred cccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHH------------------------------------
Confidence 46999999999999987 56899999999999977666654431
Q ss_pred cccccCCCceeecccceeecCCccccccCCCccccccccccccc-CeEEEEEccCCCEEEEeecCCcEEEEecCcCceee
Q 013274 267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG-AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 345 (446)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~ 345 (446)
.+|.+ .|.+..|..+|+|++|.|.|..+++|.+.+++...
T Consensus 301 ---------------------------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 301 ---------------------------------------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred ---------------------------------------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 23433 58899999999999999999999999999987532
Q ss_pred eeeeEE--EeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeecCceEEEe-cccccceEEEEEcCCCCEEEEeeCCCcE
Q 013274 346 VNFETV--RLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQI 420 (446)
Q Consensus 346 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l-~gH~~~v~~~~fSpd~~~lvtgs~D~~v 420 (446)
.+..- ...+....++.|.....++..+. ...+-.||..+...+..+ .||++.+.++.-||.+..+.|||.|..+
T Consensus 342 -~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 342 -EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred -EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence 22111 01112233455666666666653 357788998887665544 6999999999999999999999999999
Q ss_pred EEeC
Q 013274 421 LVWC 424 (446)
Q Consensus 421 ~vW~ 424 (446)
|.|-
T Consensus 421 RFWy 424 (430)
T KOG0640|consen 421 RFWY 424 (430)
T ss_pred eeee
Confidence 9994
No 37
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=4.4e-32 Score=239.41 Aligned_cols=324 Identities=16% Similarity=0.221 Sum_probs=233.8
Q ss_pred CCchhhhhhhhcccceeccccceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEE
Q 013274 14 RPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFV 93 (446)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~ 93 (446)
|+.+|..++...+|+.+..+.|-.-+.+|...|++|+-+|..-..++|||.||.|+|||+....+.
T Consensus 37 ~~rEy~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-------------- 102 (433)
T KOG0268|consen 37 RAREYTRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-------------- 102 (433)
T ss_pred hHHHHHHHhhhHHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--------------
Confidence 566777777777887776655555568999999999998754467999999999999999765431
Q ss_pred eccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274 94 VDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (446)
Q Consensus 94 ~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~ 173 (446)
..+..|.+-|..+.+.. ..++|+|+|++|+.|.++. .++.++-+.+.+..+.... ....+|+++. .|.
T Consensus 103 ---~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~---~~~~FaTcGe--~i~ 170 (433)
T KOG0268|consen 103 ---RTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHR---KNSVFATCGE--QID 170 (433)
T ss_pred ---heeecccCceeeEEecc---cceEEecCCcceeeeeccC-Ccceeeecccccccccccc---ccccccccCc--eee
Confidence 23468888898887743 5789999999999999875 3566665544443333322 2235777754 699
Q ss_pred EEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274 174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL 253 (446)
Q Consensus 174 vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (446)
|||.+-..++..+.--.+.|.++.|+|-...+|++|+.|+.|.|||+|++..++..-..-
T Consensus 171 IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m-------------------- 230 (433)
T KOG0268|consen 171 IWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM-------------------- 230 (433)
T ss_pred ecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec--------------------
Confidence 999998888999988889999999999988899999999999999999876544321000
Q ss_pred ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCc----ccccccccccccCeEEEEEccCCCEEEEeec
Q 013274 254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM----LSSQDRATAHYGAVTGLKVTEDGMYLLSAGS 329 (446)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~ 329 (446)
..+.+++.|.+.....+..+..+.... -.+.....+|.++|..|+|||-|+-++|||-
T Consensus 231 ------------------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 231 ------------------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred ------------------cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence 001112222111111111111111110 0111234678899999999999999999999
Q ss_pred CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCC
Q 013274 330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ 409 (446)
Q Consensus 330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~ 409 (446)
|.+||||.+..++..-+ +.+. --..|.||.||.|.+
T Consensus 293 DksIRIf~~~~~~SRdi-Yhtk-------------------------------------------RMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 293 DKSIRIFPVNHGHSRDI-YHTK-------------------------------------------RMQHVFCVKYSMDSK 328 (433)
T ss_pred cceEEEeecCCCcchhh-hhHh-------------------------------------------hhheeeEEEEecccc
Confidence 99999998876542110 1000 013589999999999
Q ss_pred EEEEeeCCCcEEEeCCCCCCCCCcCCCccCccCCCC
Q 013274 410 ELYTGGNDRQILVWCPSRHISDGVDAGPMQDQDNWS 445 (446)
Q Consensus 410 ~lvtgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~ 445 (446)
+++|||.|+.||+|....+...|++.-+++...+|+
T Consensus 329 yi~SGSdd~nvRlWka~Aseklgv~t~rEk~~~~Y~ 364 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKASEKLGVITPREKNKLEYN 364 (433)
T ss_pred EEEecCCCcceeeeecchhhhcCCCChhHHHHHHHH
Confidence 999999999999999999999999999999988885
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.9e-30 Score=245.73 Aligned_cols=306 Identities=20% Similarity=0.279 Sum_probs=227.8
Q ss_pred eeEeCCCccceeEEEeecCCC-CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274 36 KEIVSPHKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (446)
Q Consensus 36 ~~~~~~H~~~v~~l~~s~~~~-~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~ 114 (446)
.-.++||-|.|.++.|.|.-. ..|++|+.|++|++||+++... .+ .....|...|+++.+.+
T Consensus 140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-----------cl-----~~~~~H~S~vtsL~~~~- 202 (775)
T KOG0319|consen 140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-----------CL-----HTMILHKSAVTSLAFSE- 202 (775)
T ss_pred EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-----------HH-----HHHHhhhhheeeeeecc-
Confidence 334789999999999987533 3689999999999999986432 00 12247999999999987
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeeeEEEec----------------------------------------------C---
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM----------------------------------------------P--- 145 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~----------------------------------------------~--- 145 (446)
|+..++++|.|+.+.+||+.+.+..+..+. +
T Consensus 203 d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~ 282 (775)
T KOG0319|consen 203 DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE 282 (775)
T ss_pred CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch
Confidence 688999999999999999743221111100 0
Q ss_pred -----------------------------------------CceEEeeecc-----------------------------
Q 013274 146 -----------------------------------------GKVYRTAMSP----------------------------- 155 (446)
Q Consensus 146 -----------------------------------------~~~~~~~~~~----------------------------- 155 (446)
+.+..+.+-.
T Consensus 283 e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~ 362 (775)
T KOG0319|consen 283 EIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIP 362 (775)
T ss_pred hhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEe
Confidence 0000000000
Q ss_pred ---------C-CCCceEEEEeeCCCcEEEEeCCCC----ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274 156 ---------L-AASHMLIAAGTEDVQVRLCDIASG----AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 156 ---------~-~~~~~~lasgs~d~~v~vwd~~~~----~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~ 221 (446)
+ ..++.+|++|+.|.++++|-++.+ .++....+|.+.|.+|+++..+..+|+|+|.|++|++|+++
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence 0 011247899999999999988544 34567789999999999988887889999999999999987
Q ss_pred CCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccc
Q 013274 222 RAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSS 301 (446)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (446)
..+.-.. + ..+..
T Consensus 443 ~s~~~~~-----------~--------------------------------------------------------~~~~~ 455 (775)
T KOG0319|consen 443 KSKETAF-----------P--------------------------------------------------------IVLTC 455 (775)
T ss_pred Ccccccc-----------c--------------------------------------------------------ceehh
Confidence 5211000 0 00000
Q ss_pred cccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEE
Q 013274 302 QDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKA 380 (446)
Q Consensus 302 ~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 380 (446)
.....+|.-.|++|+++|+.++++|||.|++.+||+++..+ + ...+..+.-..-.+.|++....++.+++ .++++
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~--l--~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI 531 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR--L--LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI 531 (775)
T ss_pred hHHHHhhcccccceEecCCCceEEecccccceeeecccCce--E--EEEeeCCccceEEEEeccccceeEeccCCceEEE
Confidence 01124788889999999999999999999999999998432 1 2334444556677889888878777655 58999
Q ss_pred EEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 381 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 381 ~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
|.+.++.++++|.||+..|.-+.|-.+++.|+||++||.||||+..+..
T Consensus 532 W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 532 WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 9999999999999999999999999999999999999999999987553
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.4e-30 Score=212.54 Aligned_cols=283 Identities=22% Similarity=0.325 Sum_probs=221.2
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
++..|+++|++++|+- +|+|.+|+++|++|++||...+..+ ++..||..+|..+.... |+.
T Consensus 12 ~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~li-----------------ktYsghG~EVlD~~~s~-Dns 72 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALI-----------------KTYSGHGHEVLDAALSS-DNS 72 (307)
T ss_pred eecccccceEEEEEcc-CCCEEEEcCCCceEEeeccccccee-----------------eeecCCCceeeeccccc-ccc
Confidence 4678999999999985 7899999999999999998766532 23357888898887765 677
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC--ceeeeeeCCCCCeE
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG--AISQTLSGHRDGIM 194 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~--~~~~~l~~h~~~v~ 194 (446)
.|++|+.|+.+.+||+++|++++.+.. .+.++.+.|.. ...++++|+-|.++++||.++. ++++.|..-.+.|.
T Consensus 73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe---esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~ 149 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE---ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS 149 (307)
T ss_pred ccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC---cceEEEeccccceeEEEEcccCCCCccchhhhhcCcee
Confidence 999999999999999999999998874 45677777765 3458999999999999999875 67889988899999
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN 274 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (446)
+|..... .+++||.||++|.||+|.+....-
T Consensus 150 Si~v~~h---eIvaGS~DGtvRtydiR~G~l~sD---------------------------------------------- 180 (307)
T KOG0316|consen 150 SIDVAEH---EIVAGSVDGTVRTYDIRKGTLSSD---------------------------------------------- 180 (307)
T ss_pred EEEeccc---EEEeeccCCcEEEEEeecceeehh----------------------------------------------
Confidence 9998642 478999999999999997632100
Q ss_pred ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274 275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 354 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~ 354 (446)
..+ .||+++.|++||+.++.++.|++||+-|-++++- +..+... .+
T Consensus 181 ------------------------------y~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl-L~sYkGh-kn 226 (307)
T KOG0316|consen 181 ------------------------------YFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL-LKSYKGH-KN 226 (307)
T ss_pred ------------------------------hcC--CcceeEEecCCCCEEEEeeccceeeecccchhHH-HHHhccc-cc
Confidence 012 3699999999999999999999999999888752 2222211 11
Q ss_pred cCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccc-eEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 355 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY-VNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~-v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
++.....++......+++++. +.+.+||+.+...+..++.|... |.+++++|--..|.++. ++.+..|.-+
T Consensus 227 ~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 227 MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQE 299 (307)
T ss_pred ceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceeeh
Confidence 223334455555666666654 57899999999999999999988 89999999877777664 4455666443
No 40
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=9.8e-29 Score=212.62 Aligned_cols=254 Identities=24% Similarity=0.362 Sum_probs=210.9
Q ss_pred cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (446)
Q Consensus 98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd 176 (446)
.+.||.+.|.++-|.+ |.++++|+|.||.+.|||.-+...+..++++. .+...+++|. ...+|+|+.|+...||+
T Consensus 50 ~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS---g~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS---GNFVACGGLDNKCSIYP 125 (343)
T ss_pred EecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC---CCeEEecCcCceeEEEe
Confidence 4569999999999987 88999999999999999998877777777764 4677788874 46899999999999999
Q ss_pred CCCC------ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274 177 IASG------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS 250 (446)
Q Consensus 177 ~~~~------~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (446)
+.+. ...+.+.+|.+.+.+..|.++++ |+|+|.|.+..+||+.+++.+..
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~---------------------- 181 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQV---------------------- 181 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEE----------------------
Confidence 9855 34567999999999999998764 57999999999999988754322
Q ss_pred cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeec
Q 013274 251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGS 329 (446)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~ 329 (446)
+.+|.+.|.+|+++| +++.++||+-
T Consensus 182 ------------------------------------------------------f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 182 ------------------------------------------------------FHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ------------------------------------------------------ecCCcccEEEEecCCCCCCeEEeccc
Confidence 247999999999999 9999999999
Q ss_pred CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEeccc--ccceEEEEEcC
Q 013274 330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGH--YEYVNCCCFSS 406 (446)
Q Consensus 330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH--~~~v~~~~fSp 406 (446)
|+..++||++.+...+ .| .-+.+-...+.|.|++.-++.++.+ .++++|+.....+..|... ...|++|+||-
T Consensus 208 D~~aklWD~R~~~c~q-tF---~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQ-TF---EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred ccceeeeeccCcceeE-ee---cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 9999999999875432 22 2234456678999999988887764 7899999988888877733 45789999999
Q ss_pred CCCEEEEeeCCCcEEEeCCCCCCCCCcCCCc
Q 013274 407 QDQELYTGGNDRQILVWCPSRHISDGVDAGP 437 (446)
Q Consensus 407 d~~~lvtgs~D~~v~vW~~~~~~~~~~~~~~ 437 (446)
.|++|..|..|.++.|||.=.+..-+++.|-
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH 314 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGH 314 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeecc
Confidence 9999999999999999998776666666654
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.5e-28 Score=226.67 Aligned_cols=298 Identities=19% Similarity=0.306 Sum_probs=225.2
Q ss_pred eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
.+.+.|...++-.+|+|. |-|++||..-|+|||||....+ ++. +.++..-.+.|..+.|.+ ++
T Consensus 53 ~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~------hiL---------Knef~v~aG~I~Di~Wd~-ds 115 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKE------HIL---------KNEFQVLAGPIKDISWDF-DS 115 (603)
T ss_pred eeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcc------eee---------eeeeeecccccccceeCC-CC
Confidence 356789999999999986 7799999999999999975432 111 122234456788888987 67
Q ss_pred cEEEEEeC--C--CeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274 117 GLFVTGSY--D--HYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (446)
Q Consensus 117 ~~l~s~s~--D--~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~ 191 (446)
++++..++ + +.+.+||. +.-+-.+. +...++++.+.|.- ..++++|+.|+.|-+|.--.-+...++..|..
T Consensus 116 ~RI~avGEGrerfg~~F~~DS--G~SvGei~GhSr~ins~~~KpsR--PfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk 191 (603)
T KOG0318|consen 116 KRIAAVGEGRERFGHVFLWDS--GNSVGEITGHSRRINSVDFKPSR--PFRIATGSDDNTVAFFEGPPFKFKSSFREHSK 191 (603)
T ss_pred cEEEEEecCccceeEEEEecC--CCccceeeccceeEeeeeccCCC--ceEEEeccCCCeEEEeeCCCeeeeeccccccc
Confidence 77766554 3 45677764 33333333 22345666676643 46899999999999998766677778889999
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA 271 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (446)
-|.+|.|+||++. |+|++.||+|.+||=.++..+..++.
T Consensus 192 FV~~VRysPDG~~-Fat~gsDgki~iyDGktge~vg~l~~---------------------------------------- 230 (603)
T KOG0318|consen 192 FVNCVRYSPDGSR-FATAGSDGKIYIYDGKTGEKVGELED---------------------------------------- 230 (603)
T ss_pred ceeeEEECCCCCe-EEEecCCccEEEEcCCCccEEEEecC----------------------------------------
Confidence 9999999999985 79999999999999777654333210
Q ss_pred CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274 272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 351 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~ 351 (446)
..+|.|.|.+|+|+||++.++|.|.|.++||||+.+.+... +.
T Consensus 231 ---------------------------------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~----t~ 273 (603)
T KOG0318|consen 231 ---------------------------------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS----TW 273 (603)
T ss_pred ---------------------------------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE----Ee
Confidence 13789999999999999999999999999999999874321 11
Q ss_pred EeecC-CCeEE-EEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 352 RLQTS-KPIQL-ATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 352 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
.+... ..+++ +.-....++.+...+.+..++..+.+...++.||...|++++.+||+++|+|||.||.|.-|+...+.
T Consensus 274 ~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 274 PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred ecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence 11111 11222 23335566666677788999998999999999999999999999999999999999999999999888
Q ss_pred CCCc
Q 013274 430 SDGV 433 (446)
Q Consensus 430 ~~~~ 433 (446)
.+++
T Consensus 354 ~~~~ 357 (603)
T KOG0318|consen 354 SDRL 357 (603)
T ss_pred cccc
Confidence 8754
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1e-28 Score=236.29 Aligned_cols=359 Identities=18% Similarity=0.306 Sum_probs=228.3
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s 123 (446)
..|+|++-++ +..+||.|..||.|+||++..... .-++.||+.+|+.+.+.. .|.+|+|||
T Consensus 66 ~evt~l~~~~-d~l~lAVGYaDGsVqif~~~s~~~-----------------~~tfngHK~AVt~l~fd~-~G~rlaSGs 126 (888)
T KOG0306|consen 66 AEVTCLRSSD-DILLLAVGYADGSVQIFSLESEEI-----------------LITFNGHKAAVTTLKFDK-IGTRLASGS 126 (888)
T ss_pred ceEEEeeccC-CcceEEEEecCceEEeeccCCCce-----------------eeeecccccceEEEEEcc-cCceEeecC
Confidence 5889998874 677899999999999999875421 113469999999887764 789999999
Q ss_pred CCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274 124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE 203 (446)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~ 203 (446)
.|+.|.+||+-.......+. |+-..+.-..+..+..++++.+.|+.|++||+++..+..+.-.|.+.++++++.+ +
T Consensus 127 kDt~IIvwDlV~E~Gl~rL~--GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~ 202 (888)
T KOG0306|consen 127 KDTDIIVWDLVGEEGLFRLR--GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--K 202 (888)
T ss_pred CCccEEEEEeccceeeEEee--cchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--c
Confidence 99999999997666555444 4322222112223456888999999999999999999999999999999999986 3
Q ss_pred eEEEEeeCCCcEEEEEccC----------Cce--------------eEEeeccccc----ccCC----------------
Q 013274 204 WILVTGGCDGAIRFWDIRR----------AGC--------------FRVLDQSQSQ----LGRR---------------- 239 (446)
Q Consensus 204 ~~l~S~s~Dg~I~iWd~~~----------~~~--------------~~~~~~~~~~----~~~~---------------- 239 (446)
.+++++.|+.+++|++.. ..+ +......... .|..
T Consensus 203 -~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k 281 (888)
T KOG0306|consen 203 -LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAK 281 (888)
T ss_pred -eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHH
Confidence 578999999999999811 100 0000000000 0000
Q ss_pred ------------Cc--ccccceeec-------------------cccccCCCC-----------------CcCCCC-cc-
Q 013274 240 ------------PP--LLKRKVSIS-------------------KSLSAGQNS-----------------SVKPRA-PQ- 267 (446)
Q Consensus 240 ------------~~--~~~~~~~~~-------------------~~~~~~~~~-----------------~~~~~~-~~- 267 (446)
.. .....+..+ ......... ...... +.
T Consensus 282 ~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~ 361 (888)
T KOG0306|consen 282 ILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEA 361 (888)
T ss_pred HHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccc
Confidence 00 000000000 000000000 000000 00
Q ss_pred ---------ccccCCCceeecccceeecCC---cccc--------------------ccCCCc----------------c
Q 013274 268 ---------KRSANGNGVRQSSVGRIPAKG---SVRQ--------------------RLHPGM----------------L 299 (446)
Q Consensus 268 ---------~~~~~~~~~~~~~~~~~~~~~---~~~~--------------------~~~~~~----------------~ 299 (446)
....+...+..+....+.+++ ++.. ..-++. +
T Consensus 362 ~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 362 DRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred cccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 000001111111111111111 0000 000000 0
Q ss_pred cc---cccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce------eeeee-eEEEee-cCCCeEEEEcCCCc
Q 013274 300 SS---QDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN------TLVNF-ETVRLQ-TSKPIQLATTQDPA 368 (446)
Q Consensus 300 ~~---~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~------~~~~~-~~~~~~-~~~~~~~~~~~~~~ 368 (446)
.. .....+|.+.|..++.+||++.++|||.|.+|++||+.--.. ....+ ....+. ......+.++||+.
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 00 012358999999999999999999999999999999763211 00000 011111 23455688999999
Q ss_pred EEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 369 VVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 369 ~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
+++++.. .+++++.+.+-+..-+|.||.-+|.||.+|||+++++|||.|.+|+||-++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 9998865 589999999999999999999999999999999999999999999999876
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8e-30 Score=239.25 Aligned_cols=250 Identities=20% Similarity=0.356 Sum_probs=205.5
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+..|+..|.++.|.|. ...++++=-.|.|.|||-++.... +.+ +--.-+|.++.|.+ .-+.
T Consensus 9 ~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmV---------ksf--------eV~~~PvRa~kfia-RknW 69 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMV---------KSF--------EVSEVPVRAAKFIA-RKNW 69 (794)
T ss_pred hhccCCceeeeecCCC-CceEEEeeecCeeEEEecccceee---------eee--------eecccchhhheeee-ccce
Confidence 4568999999999986 567888888999999998765421 111 11223466666765 4569
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeEEE
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTV 196 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~sv 196 (446)
+++||+|..|||++.++++.+..|.. +.-+.+++.+|.. .+++++|.|-.|++||-+.+ .+.+++.||...|++|
T Consensus 70 iv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~---P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL---PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EEEecCCceEEEEecccceeeEEeeccccceeeeeecCCC---CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999999999988874 4557788888854 48999999999999999887 6789999999999999
Q ss_pred EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV 276 (446)
Q Consensus 197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (446)
+|.|.+...|+|+|-|++|++|.+.+..+..
T Consensus 147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf------------------------------------------------- 177 (794)
T KOG0276|consen 147 AFNPKDPNTFASASLDRTVKVWSLGSPHPNF------------------------------------------------- 177 (794)
T ss_pred EecCCCccceeeeeccccEEEEEcCCCCCce-------------------------------------------------
Confidence 9999988889999999999999986432211
Q ss_pred eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC--CEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274 277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 354 (446)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg--~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~ 354 (446)
.+.+|..-|+|++|-+.| .||+||+.|.+||+||..+..
T Consensus 178 ---------------------------Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~------------ 218 (794)
T KOG0276|consen 178 ---------------------------TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS------------ 218 (794)
T ss_pred ---------------------------eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH------------
Confidence 234788889999998755 699999999999999987542
Q ss_pred cCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCC
Q 013274 355 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 431 (446)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~ 431 (446)
++.+|.||+..|+.+.|+|.=..++|||+||+||||+..+.+++
T Consensus 219 ---------------------------------CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 219 ---------------------------------CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred ---------------------------------HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence 34678899999999999999999999999999999998877654
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.5e-30 Score=225.16 Aligned_cols=297 Identities=15% Similarity=0.246 Sum_probs=229.9
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
+.-+....+-|..||| |+.||+|||.||-|.+||..++...+. ...-....+.-|..+|.|+.|+. |..
T Consensus 208 IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKD---------LkYQAqd~fMMmd~aVlci~FSR-DsE 276 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKD---------LKYQAQDNFMMMDDAVLCISFSR-DSE 276 (508)
T ss_pred eecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhh---------hhhhhhcceeecccceEEEeecc-cHH
Confidence 4446677789999997 689999999999999999877653210 00001123345778899988876 788
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEe--cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s 195 (446)
.+|||+.||.|++|.+.+|++++.|. +...+.++.|+.+ +..+++++.|..+++.-+++|++++.++||...|+.
T Consensus 277 MlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD---~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 277 MLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD---NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC---cchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999999999999999999886 4455777777764 447889999999999999999999999999999999
Q ss_pred EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG 275 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (446)
+.|.++|.+ ++|+|.||+|++|+.++..|+..++...
T Consensus 354 a~ft~dG~~-iisaSsDgtvkvW~~KtteC~~Tfk~~~------------------------------------------ 390 (508)
T KOG0275|consen 354 ATFTDDGHH-IISASSDGTVKVWHGKTTECLSTFKPLG------------------------------------------ 390 (508)
T ss_pred eEEcCCCCe-EEEecCCccEEEecCcchhhhhhccCCC------------------------------------------
Confidence 999999987 5899999999999999988876653211
Q ss_pred eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274 276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 354 (446)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~ 354 (446)
..-+|+.+..-|.+ ..++.+...++|.+-++... ....+......
T Consensus 391 --------------------------------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ--vVrsfsSGkRE 436 (508)
T KOG0275|consen 391 --------------------------------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ--VVRSFSSGKRE 436 (508)
T ss_pred --------------------------------CcccceeEEEcCCCCceEEEEcCCCeEEEEeccce--EEeeeccCCcc
Confidence 12235555555543 35666777778888877642 11122222222
Q ss_pred cCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274 355 TSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
.+.-+..+.+|.+..++..+.+ ....|.+-+|++-+++..|+..|-.++-+|-.+.|+|-|+||.+++|.|
T Consensus 437 gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 437 GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence 2333567788888888876654 5588999999999999999999999999999999999999999999975
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.8e-29 Score=245.52 Aligned_cols=246 Identities=26% Similarity=0.491 Sum_probs=201.7
Q ss_pred ccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe--eeEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC-
Q 013274 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR--VVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI- 177 (446)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~- 177 (446)
|...|.++.+++ ++..+++++.|+.+++|++.... .++.+ .+...+..++|+++. .++++++.|.+|++||+
T Consensus 158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~---~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG---SYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC---cEEEEecCCceEEEeecc
Confidence 478898988887 78899999999999999996666 44443 233346778888754 48999999999999999
Q ss_pred CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ 257 (446)
Q Consensus 178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (446)
..+...+++++|...|.+++|+|.++ +++||+.|++|||||++++++.+.+
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l---------------------------- 284 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKL---------------------------- 284 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEee----------------------------
Confidence 55588999999999999999999995 6899999999999999987665433
Q ss_pred CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274 258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 337 (446)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd 337 (446)
.+|.+.|++++|+++|.+|++++.|++|++||
T Consensus 285 ------------------------------------------------~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 285 ------------------------------------------------KGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred ------------------------------------------------eccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 46888899999999999999999999999999
Q ss_pred cCcCcee-eeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEecccccc---eEEEEEcCCCCEEE
Q 013274 338 VESGRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEY---VNCCCFSSQDQELY 412 (446)
Q Consensus 338 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH~~~---v~~~~fSpd~~~lv 412 (446)
+.++... ...+....... ....+.+++++..++++..+ .+++||+..++...++.+|... +.+..+++++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 317 LETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred CCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence 9997632 11111111111 34678899999999998876 8999999999999999999884 45666788999999
Q ss_pred EeeCCCcEEEeCCCCCC
Q 013274 413 TGGNDRQILVWCPSRHI 429 (446)
Q Consensus 413 tgs~D~~v~vW~~~~~~ 429 (446)
+|+.|+.|.+|++....
T Consensus 396 sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 396 SGSEDGSVYVWDSSSGG 412 (456)
T ss_pred EEeCCceEEEEeCCccc
Confidence 99999999999998543
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=222.74 Aligned_cols=248 Identities=21% Similarity=0.383 Sum_probs=196.2
Q ss_pred ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (446)
Q Consensus 99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~ 177 (446)
..||...|+.+.++| +.-+++++++|.+|++||..+++++..+. +...+..+++... +.++++++.|-.+++||.
T Consensus 104 l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~---Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS---GKYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC---ccEEEecCCccchhheeH
Confidence 358999999999987 66789999999999999999999876554 2333666666653 468999999999999999
Q ss_pred CC-CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274 178 AS-GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG 256 (446)
Q Consensus 178 ~~-~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (446)
++ ..+++.+.+|...|.+|.|-|.+.+ ++|++.|.+|+.|++.++-|++.+
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv~t~--------------------------- 231 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCVKTF--------------------------- 231 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCe-eeecccccceeEEecccceeEEec---------------------------
Confidence 87 4678899999999999999999976 689999999999999988766544
Q ss_pred CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274 257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 336 (446)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW 336 (446)
.+|...|..+..+.||..++|++.|.+|++|
T Consensus 232 -------------------------------------------------~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 232 -------------------------------------------------PGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred -------------------------------------------------cCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 3566679999999999999999999999999
Q ss_pred ecCcCceeee------eeeEEEeecC---CCeEEEEc-C-CCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEE
Q 013274 337 DVESGRNTLV------NFETVRLQTS---KPIQLATT-Q-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCF 404 (446)
Q Consensus 337 d~~~~~~~~~------~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~f 404 (446)
-+.++..... ..+....... +.+.-+.. . .+.++.++.. ..+++||+.++.++.+|.||.++|..++|
T Consensus 263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF 342 (406)
T ss_pred EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEE
Confidence 9988732211 1111111110 11111111 1 1234555544 47899999999999999999999999999
Q ss_pred cCCCCEEEEeeCCCcEEEeCCCC
Q 013274 405 SSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 405 Spd~~~lvtgs~D~~v~vW~~~~ 427 (446)
+|-|++|+||.+|++++||++..
T Consensus 343 ~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 343 SPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred cCCCeEEEEEecCCcEEEEEecc
Confidence 99999999999999999999874
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.8e-30 Score=228.02 Aligned_cols=233 Identities=23% Similarity=0.395 Sum_probs=182.6
Q ss_pred cccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc
Q 013274 103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA 181 (446)
Q Consensus 103 ~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~ 181 (446)
..+|+|+.. |.+.++||..|.+|+|||.++..+++.+. ++|.+.++.+. ..++++||+|.+|++||+++++
T Consensus 197 skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd-----~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD-----ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEe---cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc-----ceEEEecCCCceEEEEeccCCc
Confidence 356777655 45689999999999999999887776554 45666655553 3589999999999999999999
Q ss_pred eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCc
Q 013274 182 ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSV 261 (446)
Q Consensus 182 ~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (446)
++.++-+|...|..+.|+.+ +++|+|.|.+|++||+......
T Consensus 269 ~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~i----------------------------------- 310 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDI----------------------------------- 310 (499)
T ss_pred hhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHH-----------------------------------
Confidence 99999999999999999742 5899999999999998642100
Q ss_pred CCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274 262 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 341 (446)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~ 341 (446)
+..-.+.||-.+|+.+.|+. +|++|+|.|++||+|++.++
T Consensus 311 --------------------------------------t~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 311 --------------------------------------TLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred --------------------------------------HHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce
Confidence 00001357888999999974 59999999999999999886
Q ss_pred ceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcE
Q 013274 342 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI 420 (446)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v 420 (446)
... ..+..+ ..-.+++-..+.++++++. .++++||+..|.+++.|.||+.-|.|+.| |.+.+|||..||+|
T Consensus 351 efv----Rtl~gH--kRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGki 422 (499)
T KOG0281|consen 351 EFV----RTLNGH--KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKI 422 (499)
T ss_pred eee----hhhhcc--cccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceE
Confidence 431 111111 1122344445666666644 68999999999999999999999999999 78999999999999
Q ss_pred EEeCCCCCC
Q 013274 421 LVWCPSRHI 429 (446)
Q Consensus 421 ~vW~~~~~~ 429 (446)
|||++...+
T Consensus 423 kvWdl~aal 431 (499)
T KOG0281|consen 423 KVWDLQAAL 431 (499)
T ss_pred EEEeccccc
Confidence 999987554
No 48
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.3e-28 Score=240.38 Aligned_cols=278 Identities=23% Similarity=0.393 Sum_probs=218.1
Q ss_pred CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (446)
Q Consensus 42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s 121 (446)
|...+.+++|. +.++++++.|++|++||..++... ...+.||.+.|+++.+.. .+..+++
T Consensus 207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i----------------~~~l~GH~g~V~~l~~~~-~~~~lvs 266 (537)
T KOG0274|consen 207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLI----------------LTRLVGHFGGVWGLAFPS-GGDKLVS 266 (537)
T ss_pred Ccchhhhheee---cCeEEecCCCceeEEeecccceEE----------------EeeccCCCCCceeEEEec-CCCEEEE
Confidence 55778899996 357999999999999998765421 122569999999988765 5789999
Q ss_pred EeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEec
Q 013274 122 GSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST 200 (446)
Q Consensus 122 ~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~ 200 (446)
||.|.++++||..++++...+.. .+.+.++...+ .++++|+.|.+|++|+++++.++..+.+|.++|.+|...
T Consensus 267 gS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~-----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 267 GSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP-----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred EecCCcEEeEecCCCcEEEEecCCCceEEEEEccC-----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 99999999999999999988873 33344444433 467889999999999999999999999999999999987
Q ss_pred CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274 201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 280 (446)
Q Consensus 201 ~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (446)
+. ++++|+.|++|++||+++++|++.+
T Consensus 341 -~~-~lvsgs~d~~v~VW~~~~~~cl~sl--------------------------------------------------- 367 (537)
T KOG0274|consen 341 -EP-LLVSGSYDGTVKVWDPRTGKCLKSL--------------------------------------------------- 367 (537)
T ss_pred -CC-EEEEEecCceEEEEEhhhceeeeee---------------------------------------------------
Confidence 33 5899999999999999987765543
Q ss_pred cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC-ceeeeeeeEEEeecCCCe
Q 013274 281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG-RNTLVNFETVRLQTSKPI 359 (446)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~-~~~~~~~~~~~~~~~~~~ 359 (446)
.+|.++|.++.+.+. .++++|+.|++|++||+.+. +... .+..+.+...
T Consensus 368 -------------------------~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~----tl~~h~~~v~ 417 (537)
T KOG0274|consen 368 -------------------------SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH----TLQGHTSLVS 417 (537)
T ss_pred -------------------------cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh----hhcCCccccc
Confidence 468899999988766 89999999999999999987 4321 1111111111
Q ss_pred EEEEcCCCcEEEEe-CCCceEEEEeecCceEEEecc-cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCC
Q 013274 360 QLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG 432 (446)
Q Consensus 360 ~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~g-H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~ 432 (446)
. .......+.+. ++..+++||..+++.++++.+ |...|+.+++. ...+++++.|+++++|+++.+..-+
T Consensus 418 ~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 418 S--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred c--cccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence 1 11223444444 446799999999999999999 78999999887 5678899999999999998765443
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.1e-28 Score=217.44 Aligned_cols=280 Identities=21% Similarity=0.361 Sum_probs=210.0
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC--cE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT--GL 118 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~--~~ 118 (446)
-|..=|.+++.. +++|+||+-||++++||.+.... ....||.+.|.++++...+. ..
T Consensus 103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk~~------------------~~~~Ght~~ik~v~~v~~n~~~~~ 161 (423)
T KOG0313|consen 103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGKSI------------------KTIVGHTGPIKSVAWVIKNSSSCL 161 (423)
T ss_pred cchhhhhhhccc---CceEEEeecCCeeEEEecCCceE------------------EEEecCCcceeeeEEEecCCccce
Confidence 377778888775 47899999999999999763211 12358999999888865443 47
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEE-----ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC---------------
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNF-----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA--------------- 178 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~--------------- 178 (446)
|+|+|.|.++++|-.+.+...... .+...+.++...+ ++..+++||.|.++++|+.+
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~---sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS---SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC---CCCeEEeecccceeeecccCCCccccccccchhhh
Confidence 999999999999988766432211 2233456666554 45689999999999999932
Q ss_pred ----------CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccccee
Q 013274 179 ----------SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVS 248 (446)
Q Consensus 179 ----------~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (446)
++.++..+.||.++|.+|.|++.. .+.|+|+|.+|+.||+.++++...+.
T Consensus 239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~~~~~~------------------ 298 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGLKSTLT------------------ 298 (423)
T ss_pred hhhhhhhcccccCceEEecccccceeeEEEcCCC--ceEeecccceEEEEEeecccceeeee------------------
Confidence 112455789999999999999843 57899999999999998876432210
Q ss_pred eccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee
Q 013274 249 ISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG 328 (446)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs 328 (446)
-.-++++++.+|..++|++|+
T Consensus 299 -----------------------------------------------------------~~ksl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 299 -----------------------------------------------------------TNKSLNCISYSPLSKLLASGS 319 (423)
T ss_pred -----------------------------------------------------------cCcceeEeecccccceeeecC
Confidence 012478899999999999999
Q ss_pred cCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEE-e-CCCceEEEEeecCc-eEEEecccccceEEEEEc
Q 013274 329 SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFV-P-CMTAVKAFDIWSGK-TCLTFRGHYEYVNCCCFS 405 (446)
Q Consensus 329 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~d~~~~~-~~~~l~gH~~~v~~~~fS 405 (446)
.|..||+||.+++.-.++.. .+..+.+-...+..+|.....++ + .++.+++||+.+.+ .+..+.+|.+.|.++.|+
T Consensus 320 sdr~irl~DPR~~~gs~v~~-s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQ-SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred CCCceeecCCCCCCCceeEE-eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence 99999999999875444322 22222333445566666555444 3 45789999998776 899999999999999996
Q ss_pred CCCCEEEEeeCCCcEEEeCC
Q 013274 406 SQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 406 pd~~~lvtgs~D~~v~vW~~ 425 (446)
++..++|||.|++|+|+.-
T Consensus 399 -~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 399 -EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred -CCceEEeccCcceEEEecc
Confidence 6779999999999999854
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-28 Score=237.21 Aligned_cols=270 Identities=22% Similarity=0.340 Sum_probs=194.2
Q ss_pred CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcC------C--------------C-----------------CC
Q 013274 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATD------Y--------------E-----------------GG 82 (446)
Q Consensus 40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~------~--------------~-----------------~~ 82 (446)
.+|.|+|++|.||+ +|+||||||.|+.|+||.+..... . + ..
T Consensus 264 ~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred cccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 38999999999996 799999999999999998755100 0 0 00
Q ss_pred Ccccc---ccceEEecc---ccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccC
Q 013274 83 GHIAK---HRSVFVVDK---QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL 156 (446)
Q Consensus 83 ~~~~~---~~~~~~~~~---~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 156 (446)
...+. ...+..+.. ..+.||.+.|..+.|+ ..++|+|+|.|+|||+|++...+++..|.++.-+.+++|.|.
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV 420 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence 00000 000111111 2346999999999997 467999999999999999999999999999999999999996
Q ss_pred CCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccc
Q 013274 157 AASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL 236 (446)
Q Consensus 157 ~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~ 236 (446)
+ ..+|++||.|+.|+||++...+.+.-.. -.+-|++|+|.|+|++ .+.|+-+|.+++|+++..+..........
T Consensus 421 D--DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~~-- 494 (712)
T KOG0283|consen 421 D--DRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRLH-- 494 (712)
T ss_pred C--CCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEeec--
Confidence 4 4689999999999999998776554322 2378999999999997 57899999999999886543322210000
Q ss_pred cCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEE
Q 013274 237 GRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK 316 (446)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 316 (446)
. .+...|. .|+++-
T Consensus 495 -----------------------------------------------------------~------~Kk~~~~-rITG~Q 508 (712)
T KOG0283|consen 495 -----------------------------------------------------------N------KKKKQGK-RITGLQ 508 (712)
T ss_pred -----------------------------------------------------------c------CccccCc-eeeeeE
Confidence 0 0011233 699999
Q ss_pred EccCCC-EEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEeccc
Q 013274 317 VTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGH 395 (446)
Q Consensus 317 fs~dg~-~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH 395 (446)
|.|... .|+..++|.+|||+|....... ..|.|+
T Consensus 509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~lv---------------------------------------------~KfKG~ 543 (712)
T KOG0283|consen 509 FFPGDPDEVLVTSNDSRIRIYDGRDKDLV---------------------------------------------HKFKGF 543 (712)
T ss_pred ecCCCCCeEEEecCCCceEEEeccchhhh---------------------------------------------hhhccc
Confidence 987543 4666789999999998543210 111111
Q ss_pred c--cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 396 Y--EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 396 ~--~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
. ..=....|++||++||++|+|..|-||+.+.+.
T Consensus 544 ~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 544 RNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 0 112356799999999999999999999875443
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.1e-27 Score=249.41 Aligned_cols=246 Identities=15% Similarity=0.280 Sum_probs=187.4
Q ss_pred ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC----e----eeEEEecCCceEEeeeccCCCCceEEEEeeCCC
Q 013274 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT----R----VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV 170 (446)
Q Consensus 99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~ 170 (446)
..+|...|+++.|++ ++++|||||.|++|+|||+... . +...+.....+..+++.+.. ..+|++++.|+
T Consensus 479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYI--KSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCC--CCEEEEEeCCC
Confidence 356899999999887 7889999999999999997532 1 12223333455666766542 35799999999
Q ss_pred cEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274 171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS 250 (446)
Q Consensus 171 ~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (446)
.|++||+.++..+..+.+|.+.|++++|+|.+..+|+||+.|++|++||++++.++..+.
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-------------------- 615 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-------------------- 615 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--------------------
Confidence 999999999999999999999999999997443468999999999999998754432221
Q ss_pred cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEc-cCCCEEEEeec
Q 013274 251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-EDGMYLLSAGS 329 (446)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~sgs~ 329 (446)
+...|.++.|+ ++|.+|++|+.
T Consensus 616 ---------------------------------------------------------~~~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 616 ---------------------------------------------------------TKANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred ---------------------------------------------------------cCCCeEEEEEeCCCCCEEEEEeC
Confidence 11347888885 57999999999
Q ss_pred CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeec------CceEEEecccccceEEE
Q 013274 330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWS------GKTCLTFRGHYEYVNCC 402 (446)
Q Consensus 330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~------~~~~~~l~gH~~~v~~~ 402 (446)
|++|++||+.+.+.... ....+......+.+. ++..++++ .+..+++||+.. .+.+.++.+|...++++
T Consensus 639 dg~I~iwD~~~~~~~~~---~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLC---TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred CCeEEEEECCCCCccce---EecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 99999999987542111 111222334455565 44455444 556899999864 35678999999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 403 CFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 403 ~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
+|+|++++|++|+.|++|+||+...+
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999999999999999987543
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-27 Score=232.97 Aligned_cols=315 Identities=17% Similarity=0.283 Sum_probs=235.7
Q ss_pred CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (446)
Q Consensus 42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s 121 (446)
-+..|..|+|.|. -..++++=..|.|++||-.-++.. ..+.+|.++|..+.|+| ...+|+|
T Consensus 8 kSsRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli-----------------~rFdeHdGpVRgv~FH~-~qplFVS 68 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLI-----------------DRFDEHDGPVRGVDFHP-TQPLFVS 68 (1202)
T ss_pred ccccccceecCCC-CCEEEEeecCceeeeehhhhhhHH-----------------hhhhccCCccceeeecC-CCCeEEe
Confidence 3567889999986 458889999999999998765532 23468999999999998 6789999
Q ss_pred EeCCCeEEEEECCCCeeeEEEecCCc---eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 122 GSYDHYVKVWDTNCTRVVMNFKMPGK---VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 122 ~s~D~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
||+|-+|++|+.++.+++.++. |+ +..+.|++ .-..|+|+|.|-+|+||+..+++++..+.||+..|+|..|
T Consensus 69 GGDDykIkVWnYk~rrclftL~--GHlDYVRt~~FHh---eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqF 143 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTRRCLFTLL--GHLDYVRTVFFHH---EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQF 143 (1202)
T ss_pred cCCccEEEEEecccceehhhhc--cccceeEEeeccC---CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeecc
Confidence 9999999999999988876554 44 44455554 4458999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (446)
.|... +++|+|-|.+||+||+..... .+...+.... ..+..+ .++
T Consensus 144 hptED-lIVSaSLDQTVRVWDisGLRk------k~~~pg~~e~--------------------~~~~~~---~~~----- 188 (1202)
T KOG0292|consen 144 HPTED-LIVSASLDQTVRVWDISGLRK------KNKAPGSLED--------------------QMRGQQ---GNS----- 188 (1202)
T ss_pred CCccc-eEEEecccceEEEEeecchhc------cCCCCCCchh--------------------hhhccc---cch-----
Confidence 99766 579999999999999864210 0000000000 000000 000
Q ss_pred cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274 279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 358 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~ 358 (446)
. .-+..+. .-...+.||..-|+-++|+|.-..++||+.|+.||+|.+...+. =...+...+.+..
T Consensus 189 ----d--Lfg~~Da-------VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa--WEvDtcrgH~nnV 253 (1202)
T KOG0292|consen 189 ----D--LFGQTDA-------VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTCRGHYNNV 253 (1202)
T ss_pred ----h--hcCCcCe-------eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc--eeehhhhcccCCc
Confidence 0 0000000 00112468999999999999999999999999999998875432 1233444456677
Q ss_pred eEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCC
Q 013274 359 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 431 (446)
Q Consensus 359 ~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~ 431 (446)
..+.|.|....+.+.+. ..+++||+.+++.+.+|+...++.++++-+|..++++ ++.|+-+.|+.+++.++.
T Consensus 254 ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VFkleRErpa 326 (1202)
T KOG0292|consen 254 SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVFKLERERPA 326 (1202)
T ss_pred ceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee-eecCCceEEEEEcccCce
Confidence 77888888788777655 5899999999999999999999999999999998876 557888899988765544
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.6e-28 Score=200.82 Aligned_cols=241 Identities=19% Similarity=0.414 Sum_probs=191.6
Q ss_pred cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (446)
Q Consensus 100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~ 178 (446)
..|+++|.++.+.- +|++.+||+.|++||+|+...+.+++++..+|+ +..++.+. +...+++++.|..|.+||++
T Consensus 14 ~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~---Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS---DNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred cccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc---cccccccCCCCceEEEEEcc
Confidence 57889998877764 899999999999999999999999999987665 44444444 34578999999999999999
Q ss_pred CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274 179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN 258 (446)
Q Consensus 179 ~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (446)
+|+..+.+.+|.+.|.+|.|+.+.. +++|||.|.+||+||-|.... + |+
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~----e----------Pi---------------- 138 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSF----E----------PI---------------- 138 (307)
T ss_pred cCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCC----C----------cc----------------
Confidence 9999999999999999999997765 789999999999999875321 0 00
Q ss_pred CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274 259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 338 (446)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~ 338 (446)
+.+......|.++..+ +..+++||.||++|.||+
T Consensus 139 --------------------------------------------Qildea~D~V~Si~v~--~heIvaGS~DGtvRtydi 172 (307)
T KOG0316|consen 139 --------------------------------------------QILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDI 172 (307)
T ss_pred --------------------------------------------chhhhhcCceeEEEec--ccEEEeeccCCcEEEEEe
Confidence 0000112336666665 578999999999999999
Q ss_pred CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccce--EEEEEcCCCCEEEEee
Q 013274 339 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV--NCCCFSSQDQELYTGG 415 (446)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v--~~~~fSpd~~~lvtgs 415 (446)
+.++.. ..+ -..+...+.+++++...+.++. +.+++.|-.+|+++..+.||.+.= .+++|+.....+++||
T Consensus 173 R~G~l~-sDy-----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgS 246 (307)
T KOG0316|consen 173 RKGTLS-SDY-----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS 246 (307)
T ss_pred ecceee-hhh-----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEecc
Confidence 987521 100 0224557889999988766655 688999999999999999998643 5778888889999999
Q ss_pred CCCcEEEeCCCC
Q 013274 416 NDRQILVWCPSR 427 (446)
Q Consensus 416 ~D~~v~vW~~~~ 427 (446)
+||.|.+|++..
T Consensus 247 EDG~Vy~wdLvd 258 (307)
T KOG0316|consen 247 EDGKVYFWDLVD 258 (307)
T ss_pred CCceEEEEEecc
Confidence 999999999853
No 54
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=7.3e-28 Score=218.96 Aligned_cols=273 Identities=21% Similarity=0.353 Sum_probs=203.5
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~ 120 (446)
.|.|.|+.+++-|.+...++|++..+.|.|||..+....... ....++-+ .+.||+.+=+++.|++.....|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~--~~~~~Pdl-----~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA--SGECRPDL-----RLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc--cccCCCce-----EEEeecccccccccccccceeEe
Confidence 699999999998988889999999999999998654322110 00111111 22478877777899888888999
Q ss_pred EEeCCCeEEEEECCCCee-------eEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC--CCceeeeeeCCC
Q 013274 121 TGSYDHYVKVWDTNCTRV-------VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA--SGAISQTLSGHR 190 (446)
Q Consensus 121 s~s~D~~i~iWd~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~--~~~~~~~l~~h~ 190 (446)
+++.|++|++||+..... ...+. +...+..+++++... .+|++.+.|+.+.|||++ +.++.....+|.
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~--~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~ 272 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE--DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS 272 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccch--hhheeecCCCeEEEEEcCCCCCCCcccccccC
Confidence 999999999999875332 11222 334577888888643 589999999999999999 556677888999
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS 270 (446)
Q Consensus 191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (446)
++|.|++|+|.+.++|||||.|++|++||+|+...
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--------------------------------------------- 307 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--------------------------------------------- 307 (422)
T ss_pred CceeEEEeCCCCCceEEeccCCCcEEEeechhccc---------------------------------------------
Confidence 99999999999999999999999999999996321
Q ss_pred cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeee
Q 013274 271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFE 349 (446)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~ 349 (446)
..-...+|...|.+|-|||.. ..|+|++.|+++.+||+..-..... .+
T Consensus 308 ------------------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~-~e 356 (422)
T KOG0264|consen 308 ------------------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS-PE 356 (422)
T ss_pred ------------------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-hh
Confidence 000134788999999999975 6789999999999999975211000 00
Q ss_pred EEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCE-EEEeeCCCcEEEeCCCCC
Q 013274 350 TVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~-lvtgs~D~~v~vW~~~~~ 428 (446)
. ....+ +.++| .=.||+..|+++.|.|+..+ ++|.+.|+.+.||.+...
T Consensus 357 d---a~dgp--------pEllF-------------------~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 357 D---AEDGP--------PELLF-------------------IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred h---hccCC--------cceeE-------------------EecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 0 00011 12222 23589999999999999877 669999999999998744
No 55
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=5.3e-29 Score=223.04 Aligned_cols=247 Identities=23% Similarity=0.383 Sum_probs=178.9
Q ss_pred cceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccC-ccccEeEEEEe
Q 013274 34 NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG-HKYAISSAIWY 112 (446)
Q Consensus 34 ~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~~~~~ 112 (446)
+++.++..|...|.+|.|++ ++.+++||+.||.|++|+.+-.-. +..++ |+.+|++++|+
T Consensus 129 nFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnnV------------------k~~~ahh~eaIRdlafS 189 (464)
T KOG0284|consen 129 NFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNNV------------------KIIQAHHAEAIRDLAFS 189 (464)
T ss_pred eHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhhh------------------HHhhHhhhhhhheeccC
Confidence 34556778999999999985 689999999999999998753211 01134 44889999999
Q ss_pred ecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274 113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (446)
Q Consensus 113 ~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~ 191 (446)
| +...|+|||+|++|+|||....+..+.+..++. +.++.++|. .-+||+|+.|..|++||.+++.++.++.+|..
T Consensus 190 p-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~---kgLiasgskDnlVKlWDprSg~cl~tlh~HKn 265 (464)
T KOG0284|consen 190 P-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT---KGLIASGSKDNLVKLWDPRSGSCLATLHGHKN 265 (464)
T ss_pred C-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc---cceeEEccCCceeEeecCCCcchhhhhhhccc
Confidence 8 455899999999999999987777666554332 567777774 45899999999999999999999999999999
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCC--CcccccceeeccccccCCCCCcCCCCcccc
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR--PPLLKRKVSISKSLSAGQNSSVKPRAPQKR 269 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (446)
.|+++.|+|+++| |+|+|.|..++++|+|+-+.++.+..+...+-.. .|+... .+
T Consensus 266 tVl~~~f~~n~N~-Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~------lf---------------- 322 (464)
T KOG0284|consen 266 TVLAVKFNPNGNW-LLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES------LF---------------- 322 (464)
T ss_pred eEEEEEEcCCCCe-eEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc------ce----------------
Confidence 9999999999976 7899999999999999766665554433221110 000000 00
Q ss_pred ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274 270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 338 (446)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~ 338 (446)
..+ ...+++................+|.+.|.+|+++|-|..|+||+.|.++|+|.-
T Consensus 323 -tsg-----------g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 323 -TSG-----------GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred -eec-----------cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 000 000111110000000001123589999999999999999999999999999953
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5e-26 Score=193.08 Aligned_cols=285 Identities=17% Similarity=0.292 Sum_probs=214.9
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
..+|.+.|.+|+|+. +|..|++||.|+++++|+++..... ......||.+.|-.++|.|...++
T Consensus 16 ~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~---------------~~~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFR---------------KELVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhh---------------hhhcccCCCcchhhheeCCCCCcc
Confidence 357899999999985 6889999999999999999865321 122346899999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
|++++.|++|++||+..+++.......+.-..+.++|.+ .+++.+..|..|...|.++.+.....+ ....+.-+.|
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g---~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w 155 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDG---EYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISW 155 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCC---CEEEEecCcccEEEEEecccceeehhc-ccceeeeeee
Confidence 999999999999999999998888777666677888754 588999999999999998876654433 4456777888
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (446)
+.++..+++ ...-|+|.|-.....+.
T Consensus 156 ~~~nd~Ffl-t~GlG~v~ILsypsLkp----------------------------------------------------- 181 (313)
T KOG1407|consen 156 NNSNDLFFL-TNGLGCVEILSYPSLKP----------------------------------------------------- 181 (313)
T ss_pred cCCCCEEEE-ecCCceEEEEecccccc-----------------------------------------------------
Confidence 866665444 44457777765432111
Q ss_pred cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274 279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 358 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~ 358 (446)
.+...+|...-.|+.|+|+|+|+|+|+.|..+-+||+..--+. .... ....+
T Consensus 182 -----------------------v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~----R~is-Rldwp 233 (313)
T KOG1407|consen 182 -----------------------VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE----RCIS-RLDWP 233 (313)
T ss_pred -----------------------ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh----eeec-cccCc
Confidence 1123578877889999999999999999999999999753221 1111 12233
Q ss_pred e-EEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC---------CcEEEeCCC
Q 013274 359 I-QLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND---------RQILVWCPS 426 (446)
Q Consensus 359 ~-~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D---------~~v~vW~~~ 426 (446)
+ .+.|+.++.++++++.+ .+-+-++.+|..+..++ |+++.+.|+|+|...+||-+..| ++||++-.+
T Consensus 234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 3 46788999999887654 34445557788777776 78899999999999999965554 567777544
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.3e-25 Score=193.44 Aligned_cols=292 Identities=18% Similarity=0.274 Sum_probs=220.3
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
++..-.+.|++|.|+. +|.+|++++.|.+++|||..++.... ...-++.+|..+.|-..+.
T Consensus 9 ~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~-----------------ti~skkyG~~~~~Fth~~~- 69 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVK-----------------TINSKKYGVDLACFTHHSN- 69 (311)
T ss_pred ccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceee-----------------EeecccccccEEEEecCCc-
Confidence 3445568899999985 68899999999999999998765321 1124556666666654344
Q ss_pred EEEEEe--CCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274 118 LFVTGS--YDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (446)
Q Consensus 118 ~l~s~s--~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~ 194 (446)
.++-++ .|.+||+-++.+.+.++.|..+ ..+.++..+|.. ..+++++.|.+|++||++..++...+.-..- .
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~---d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--p 144 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD---DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--P 144 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC---CeEEecccCCeEEeeEecCCCCceEEecCCC--c
Confidence 344344 4999999999999999988744 347788888754 5799999999999999998888777654333 4
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCc--eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (446)
.++|+|.|- ++|.+...+.|+|||+|.-. .+..+.
T Consensus 145 i~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~------------------------------------------ 181 (311)
T KOG1446|consen 145 IAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFS------------------------------------------ 181 (311)
T ss_pred ceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEc------------------------------------------
Confidence 567999885 67888777799999998531 111110
Q ss_pred CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 352 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~ 352 (446)
+ ..+-....+.|.|||||++|+-+...+.+++.|.-+|.. ...+....
T Consensus 182 ---------------------i----------~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~-~~tfs~~~ 229 (311)
T KOG1446|consen 182 ---------------------I----------TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV-KSTFSGYP 229 (311)
T ss_pred ---------------------c----------CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE-eeeEeecc
Confidence 0 001123478899999999999999999999999998863 22333333
Q ss_pred eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecc-cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274 353 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 430 (446)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~g-H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~ 430 (446)
.....+..+.++||+..++++.. +.+.+|++.++..+..+++ |.+++.|+.|+|--.++||++ ..+-+|-|+.+++
T Consensus 230 ~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 230 NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDEDAL 307 (311)
T ss_pred CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecccccc
Confidence 33334567889999999998876 6899999999999999999 899999999999998998874 5699999986654
No 58
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.8e-26 Score=198.10 Aligned_cols=252 Identities=19% Similarity=0.296 Sum_probs=193.5
Q ss_pred cccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEee--CCCcEEEEeCCC
Q 013274 103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGT--EDVQVRLCDIAS 179 (446)
Q Consensus 103 ~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs--~d~~v~vwd~~~ 179 (446)
...|.++.+++ +|..+++++.|.++++||..+++.++++..... +..+.|.... . .+..++ .|.+|+.-++.+
T Consensus 14 ~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~--~-~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 14 NGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS--N-TVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC--c-eEEEccCCCCCceEEEEeec
Confidence 34577877776 899999999999999999999999888765422 2334444322 2 333334 488999999999
Q ss_pred CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS 259 (446)
Q Consensus 180 ~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (446)
+++++.+.||.+.|.++..+|-+. .++|+|.|++||+||+|..+|...+..
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~---------------------------- 140 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL---------------------------- 140 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec----------------------------
Confidence 999999999999999999999886 588999999999999997666443310
Q ss_pred CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274 260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 339 (446)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~ 339 (446)
..-...+|+|.|-++|++...+.|++||++
T Consensus 141 --------------------------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 141 --------------------------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred --------------------------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEec
Confidence 012335799999999999888899999998
Q ss_pred cC-ceeeeeeeEEEee---cCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccce---EEEEEcCCCCEE
Q 013274 340 SG-RNTLVNFETVRLQ---TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV---NCCCFSSQDQEL 411 (446)
Q Consensus 340 ~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v---~~~~fSpd~~~l 411 (446)
+- +-. +...... ......+.+++++..+++... +.+.+.|..+|..+.++.+|.+.- ....|+||++++
T Consensus 171 s~dkgP---F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 171 SFDKGP---FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred ccCCCC---ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence 73 222 2222222 234567889999988777654 578999999999999999987654 688999999999
Q ss_pred EEeeCCCcEEEeCCCCCCCCCcCCCc-cCc
Q 013274 412 YTGGNDRQILVWCPSRHISDGVDAGP-MQD 440 (446)
Q Consensus 412 vtgs~D~~v~vW~~~~~~~~~~~~~~-~~~ 440 (446)
.+|+.|++|.+|+++++..-....|+ +..
T Consensus 248 l~gs~dg~i~vw~~~tg~~v~~~~~~~~~~ 277 (311)
T KOG1446|consen 248 LSGSDDGTIHVWNLETGKKVAVLRGPNGGP 277 (311)
T ss_pred EEecCCCcEEEEEcCCCcEeeEecCCCCCC
Confidence 99999999999999877644455553 443
No 59
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.4e-25 Score=220.36 Aligned_cols=173 Identities=17% Similarity=0.333 Sum_probs=137.0
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
++.+|++.|++++|+|.++++|+|||.|++|++||+.++..... ...++ ....+|...|.++.|+|....
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~-----~~~~l-----~~L~gH~~~V~~l~f~P~~~~ 139 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-----ISDPI-----VHLQGHTKKVGIVSFHPSAMN 139 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-----cCcce-----EEecCCCCcEEEEEeCcCCCC
Confidence 46789999999999985678999999999999999975421100 00111 123589999999999986667
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe-EE
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-MT 195 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v-~s 195 (446)
+|+||+.|++|+|||+.+++.+..+. +...+.++++++. ..+|++++.|+.|++||+++++.+..+.+|.+.+ ..
T Consensus 140 iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd---G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 140 VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD---GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR 216 (493)
T ss_pred EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC---CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence 99999999999999999988877765 4456888888874 4589999999999999999999999999998754 46
Q ss_pred EEEecCCCeEEEEe---eCCCcEEEEEccCC
Q 013274 196 VEWSTSSEWILVTG---GCDGAIRFWDIRRA 223 (446)
Q Consensus 196 v~~s~~~~~~l~S~---s~Dg~I~iWd~~~~ 223 (446)
+.|.+++..++.+| +.|++|++||+++.
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 77888877544333 35899999999853
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=228.16 Aligned_cols=272 Identities=24% Similarity=0.362 Sum_probs=200.0
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+.+|++.|++++|.. ++.+|+|||.|.++++||+.++.+. ..+.||...|.++... ...
T Consensus 245 l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~-----------------~~l~gh~stv~~~~~~---~~~ 303 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECT-----------------HSLQGHTSSVRCLTID---PFL 303 (537)
T ss_pred ccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEE-----------------EEecCCCceEEEEEcc---Cce
Confidence 568999999999964 6789999999999999999888752 1235899999887654 457
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~ 197 (446)
+++||.|.+|++|++.++.++..+. +.+.++++.+. ..++++|+.|+.|++||+.++++++.+.||...|.++.
T Consensus 304 ~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 304 LVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLI 378 (537)
T ss_pred EeeccCCceEEEEeccCcceEEEeccccccEEEEEec-----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEE
Confidence 8899999999999999999998888 77778877766 35899999999999999999999999999999999998
Q ss_pred EecCCCeEEEEeeCCCcEEEEEccCC-ceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274 198 WSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV 276 (446)
Q Consensus 198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (446)
+.+. + .+++|+.|++|++||+++. +|...+
T Consensus 379 ~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl----------------------------------------------- 409 (537)
T KOG0274|consen 379 VDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTL----------------------------------------------- 409 (537)
T ss_pred ecCc-c-eEEeeeeccceEeecCCchhhhhhhh-----------------------------------------------
Confidence 8654 3 4789999999999999876 443222
Q ss_pred eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274 277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 356 (446)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~ 356 (446)
.+|.+-+..+ ...+++|++++.|++|++||..++...... +.. +..
T Consensus 410 -----------------------------~~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~-~~~--~~~ 455 (537)
T KOG0274|consen 410 -----------------------------QGHTSLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTL-EGR--HVG 455 (537)
T ss_pred -----------------------------cCCccccccc--ccccceeEeccccccEEEeecccCceeeee-ccC--Ccc
Confidence 2344444333 345789999999999999999987643221 110 112
Q ss_pred CCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccc-cceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274 357 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVW 423 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~-~~v~~~~fSpd~~~lvtgs~D~~v~vW 423 (446)
....++.. +..++.......+++||+.+++..+.+-.+. .....+++. ....++........|
T Consensus 456 ~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 519 (537)
T KOG0274|consen 456 GVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPS---SPSFSTANVEAVQSW 519 (537)
T ss_pred cEEEeecC-cceEEEEecCCeeEEEecccCchhhhhhhcccccccccccC---CCccccccccccccc
Confidence 22222222 3444555556789999999999887774444 333444332 223344444444444
No 61
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=1.9e-26 Score=199.31 Aligned_cols=243 Identities=20% Similarity=0.354 Sum_probs=192.6
Q ss_pred ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEE
Q 013274 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175 (446)
Q Consensus 99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vw 175 (446)
..||+++|+.+.|.| ++..|||||.|..|.+|++.. .+..... +.+.+..+.+..+ ...+++++.|..|+.|
T Consensus 43 l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d---~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRD---GSHILSCGTDKTVRGW 117 (338)
T ss_pred cCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccC---CCEEEEecCCceEEEE
Confidence 369999999999998 899999999999999999742 2222222 3445666666654 4578999999999999
Q ss_pred eCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA 255 (446)
Q Consensus 176 d~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (446)
|+++|+.++.+++|..-|.++.-+.-+..++.|++.|+++|+||+|+..+.+.++
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~------------------------- 172 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE------------------------- 172 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------------------------
Confidence 9999999999999999999998666666678899999999999999765433221
Q ss_pred CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEE
Q 013274 256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 335 (446)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~l 335 (446)
..-.++++.|...+..+++|+-|+.|++
T Consensus 173 ----------------------------------------------------~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 173 ----------------------------------------------------NKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred ----------------------------------------------------cceeEEEEEecccccceeeccccCceee
Confidence 0123789999999999999999999999
Q ss_pred EecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeec----CceEEEecccc----cceEEEEEcC
Q 013274 336 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWS----GKTCLTFRGHY----EYVNCCCFSS 406 (446)
Q Consensus 336 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~----~~~~~~l~gH~----~~v~~~~fSp 406 (446)
||+...... ..+.-+......+..++++..+.+. ....+++||+.. ..++..+.||. .....++|||
T Consensus 201 Wd~r~~d~~----~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 201 WDLRKNDGL----YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred eccccCcce----EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 999765432 2333445566778888888887775 446899999854 24577888874 4567899999
Q ss_pred CCCEEEEeeCCCcEEEeCCCC
Q 013274 407 QDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 407 d~~~lvtgs~D~~v~vW~~~~ 427 (446)
+++.+..||.|+.+.+|+...
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred CCCccccccccceEEEeeccc
Confidence 999999999999999998864
No 62
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.8e-26 Score=192.91 Aligned_cols=209 Identities=23% Similarity=0.361 Sum_probs=162.4
Q ss_pred ccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee---eEEEe--cCCceEEeeeccCCCCceEEEEeeCCCc
Q 013274 97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV---VMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQ 171 (446)
Q Consensus 97 ~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~lasgs~d~~ 171 (446)
+...||++.+..++++|..|..|||||.|+.||+|++..+.- ...+. +...+.+++++|.+ .+||+||.|.+
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g---~~La~aSFD~t 84 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG---RYLASASFDAT 84 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC---cEEEEeeccce
Confidence 345699999999999996577999999999999999985322 21111 33457888998864 49999999999
Q ss_pred EEEEeCCCC--ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceee
Q 013274 172 VRLCDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSI 249 (446)
Q Consensus 172 v~vwd~~~~--~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (446)
+-||.-..+ +++..|+||..+|.+|+|+++|.+ |||++.|+.|-||-+.....+..+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~deddEfec~-------------------- 143 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDEDDEFECI-------------------- 143 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCCCcEEEE--------------------
Confidence 999987665 578899999999999999999985 899999999999987643322111
Q ss_pred ccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec
Q 013274 250 SKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS 329 (446)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~ 329 (446)
..+..|...|..+.|+|...+|+|+|.
T Consensus 144 -----------------------------------------------------aVL~~HtqDVK~V~WHPt~dlL~S~SY 170 (312)
T KOG0645|consen 144 -----------------------------------------------------AVLQEHTQDVKHVIWHPTEDLLFSCSY 170 (312)
T ss_pred -----------------------------------------------------eeeccccccccEEEEcCCcceeEEecc
Confidence 012467777999999999999999999
Q ss_pred CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCC
Q 013274 330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ 409 (446)
Q Consensus 330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~ 409 (446)
|.+||+|.-.-+. +..+..+|.+|++.|++++|.|.|.
T Consensus 171 DnTIk~~~~~~dd------------------------------------------dW~c~~tl~g~~~TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 171 DNTIKVYRDEDDD------------------------------------------DWECVQTLDGHENTVWSLAFDNIGS 208 (312)
T ss_pred CCeEEEEeecCCC------------------------------------------CeeEEEEecCccceEEEEEecCCCc
Confidence 9999999744210 1234456677777778888887777
Q ss_pred EEEEeeCCCcEEEeC
Q 013274 410 ELYTGGNDRQILVWC 424 (446)
Q Consensus 410 ~lvtgs~D~~v~vW~ 424 (446)
.|++|+.|++|+||.
T Consensus 209 rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 209 RLVSCSDDGTVSIWR 223 (312)
T ss_pred eEEEecCCcceEeee
Confidence 778888888888886
No 63
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.2e-25 Score=220.76 Aligned_cols=261 Identities=18% Similarity=0.211 Sum_probs=181.9
Q ss_pred CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (446)
Q Consensus 42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s 121 (446)
|-..|+...+++ ++..+++++.+..+..|+...+..........+... ......||.+.|.++.|+|.++.+|+|
T Consensus 19 ~~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~----~~~~l~GH~~~V~~v~fsP~d~~~LaS 93 (493)
T PTZ00421 19 HFLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLAS----NPPILLGQEGPIIDVAFNPFDPQKLFT 93 (493)
T ss_pred ceeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCC----CCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence 445566555654 445678999999999998654321100000000000 001235899999999999877889999
Q ss_pred EeCCCeEEEEECCCCe-------eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274 122 GSYDHYVKVWDTNCTR-------VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (446)
Q Consensus 122 ~s~D~~i~iWd~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v 193 (446)
||.|++|++||+.++. ++..+. +...+..+.|+|.. ..+|++|+.|+.|++||++++.....+.+|.+.|
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V 171 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence 9999999999997642 233333 34457788888753 2489999999999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG 273 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (446)
.+++|+|++. +|++++.|++|++||++++..+..+
T Consensus 172 ~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl-------------------------------------------- 206 (493)
T PTZ00421 172 TSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSV-------------------------------------------- 206 (493)
T ss_pred EEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEE--------------------------------------------
Confidence 9999999987 4799999999999999976543322
Q ss_pred CceeecccceeecCCccccccCCCcccccccccccccC-eEEEEEccCCCEEEEee----cCCcEEEEecCcCceeeeee
Q 013274 274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSAG----SDSRIRLWDVESGRNTLVNF 348 (446)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~fs~dg~~l~sgs----~D~~i~lWd~~~~~~~~~~~ 348 (446)
.+|.+. +..+.|.+++..+++++ .|++|++||+.+......
T Consensus 207 --------------------------------~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~-- 252 (493)
T PTZ00421 207 --------------------------------EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS-- 252 (493)
T ss_pred --------------------------------ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee--
Confidence 123222 34566888877777654 479999999875421110
Q ss_pred eEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEee-CCCcEEEeCCCC
Q 013274 349 ETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVWCPSR 427 (446)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs-~D~~v~vW~~~~ 427 (446)
... ..+...+....|+||+++|++|+ .|++|++|++..
T Consensus 253 -~~~----------------------------------------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 253 -TVD----------------------------------------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred -Eec----------------------------------------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 000 01223355667889999988877 499999998876
Q ss_pred CC
Q 013274 428 HI 429 (446)
Q Consensus 428 ~~ 429 (446)
..
T Consensus 292 ~~ 293 (493)
T PTZ00421 292 ER 293 (493)
T ss_pred Cc
Confidence 54
No 64
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.9e-26 Score=213.94 Aligned_cols=202 Identities=21% Similarity=0.361 Sum_probs=167.5
Q ss_pred ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (446)
Q Consensus 43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~ 122 (446)
.-+|.+..|-. .-+.+++||.|..|+|||.++.++. ..++.|..-|.+++.+|. ..+++|+
T Consensus 55 ~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV-----------------~~FeAH~DyIR~iavHPt-~P~vLts 115 (794)
T KOG0276|consen 55 EVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKV-----------------KTFEAHSDYIRSIAVHPT-LPYVLTS 115 (794)
T ss_pred ccchhhheeee-ccceEEEecCCceEEEEecccceee-----------------EEeeccccceeeeeecCC-CCeEEec
Confidence 35677777765 4578999999999999999887542 234689999999999984 5599999
Q ss_pred eCCCeEEEEECCCC-eeeEEEecCCc-eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEec
Q 013274 123 SYDHYVKVWDTNCT-RVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST 200 (446)
Q Consensus 123 s~D~~i~iWd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~ 200 (446)
|+|-+|++||-+.. .+..+|..+.+ +.++++.|-++ ..+|++|.|++|+||.+....+..+|.||...|.+|.|-+
T Consensus 116 SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~--ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~ 193 (794)
T KOG0276|consen 116 SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP--NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYT 193 (794)
T ss_pred CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEecc
Confidence 99999999998653 45556654433 67888888654 5799999999999999999999999999999999999977
Q ss_pred CC-CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeec
Q 013274 201 SS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS 279 (446)
Q Consensus 201 ~~-~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (446)
.+ +-+|+||+.|.+|++||.++..|++++
T Consensus 194 ~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-------------------------------------------------- 223 (794)
T KOG0276|consen 194 GGDKPYLISGADDLTIKVWDYQTKSCVQTL-------------------------------------------------- 223 (794)
T ss_pred CCCcceEEecCCCceEEEeecchHHHHHHh--------------------------------------------------
Confidence 54 224799999999999999887765443
Q ss_pred ccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274 280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 341 (446)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~ 341 (446)
.||...|+++.|+|.=..++|||.||++|||.-.+-
T Consensus 224 --------------------------eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 224 --------------------------EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred --------------------------hcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 467888999999999999999999999999987763
No 65
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=9.7e-28 Score=219.42 Aligned_cols=251 Identities=20% Similarity=0.323 Sum_probs=188.8
Q ss_pred cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC-CeeeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEE
Q 013274 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-TRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLC 175 (446)
Q Consensus 98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vw 175 (446)
...||...|+++.|+|..+.+|+|+|.|+.|+||++-. +.++++|..+. .+..+.++.. ...+++++.|+.+++|
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~---g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC---GTSFLSASFDRFLKLW 285 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc---CCeeeeeecceeeeee
Confidence 34799999999999998999999999999999999865 78888887433 3455555553 4578999999999999
Q ss_pred eCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA 255 (446)
Q Consensus 176 d~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (446)
|+++|.++..+.. ...+.+|.|.|+++++|++|+.|+.|+.||+|+++.++.+
T Consensus 286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-------------------------- 338 (503)
T KOG0282|consen 286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-------------------------- 338 (503)
T ss_pred ccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH--------------------------
Confidence 9999999888853 3567899999999888999999999999999987532211
Q ss_pred CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEE
Q 013274 256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 335 (446)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~l 335 (446)
-.|-+.|..+.|-++|++++|.+.|++++|
T Consensus 339 --------------------------------------------------d~hLg~i~~i~F~~~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 339 --------------------------------------------------DRHLGAILDITFVDEGRRFISSSDDKSVRI 368 (503)
T ss_pred --------------------------------------------------HhhhhheeeeEEccCCceEeeeccCccEEE
Confidence 235677999999999999999999999999
Q ss_pred EecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeecC---ceEEEecccc--cceEEEEEcCCCC
Q 013274 336 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSG---KTCLTFRGHY--EYVNCCCFSSQDQ 409 (446)
Q Consensus 336 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~---~~~~~l~gH~--~~v~~~~fSpd~~ 409 (446)
|+...+-....... ..+-....+...|.+..++.- .++.+.++.+... ...+.|.||. +.-..|.|||||+
T Consensus 369 We~~~~v~ik~i~~---~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 369 WENRIPVPIKNIAD---PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred EEcCCCccchhhcc---hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence 99886532110000 001111224444554444332 3345666654322 2345788995 5567899999999
Q ss_pred EEEEeeCCCcEEEeCCCCCCCC
Q 013274 410 ELYTGGNDRQILVWCPSRHISD 431 (446)
Q Consensus 410 ~lvtgs~D~~v~vW~~~~~~~~ 431 (446)
+|+||+.||.+.+|+..+.++-
T Consensus 446 ~l~SGdsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 446 TLCSGDSDGKVNFWDWKTTKLV 467 (503)
T ss_pred eEEeecCCccEEEeechhhhhh
Confidence 9999999999999999877543
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.9e-27 Score=211.45 Aligned_cols=286 Identities=19% Similarity=0.319 Sum_probs=215.8
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
++..|.+.|+.+.|-+ +...|++|+.|..|++||+.... .+. ..++.|-.+.|+++.+-+ ++.
T Consensus 170 ~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k-~~~--------------~~tLaGs~g~it~~d~d~-~~~ 232 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEK-SEL--------------ISTLAGSLGNITSIDFDS-DNK 232 (459)
T ss_pred hhhccccccceeEEcc-Ccchhhhcchhhhhhhhhcccch-hhh--------------hhhhhccCCCcceeeecC-CCc
Confidence 4557999999999964 55679999999999999986433 110 123345667788877765 678
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~ 197 (446)
.+++++.|+.+++|++...+...++.. |...+....+..++..+++|+.|.+|++||+..+.+.+++- ....+..|.
T Consensus 233 ~~iAas~d~~~r~Wnvd~~r~~~TLsG--HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~ 309 (459)
T KOG0288|consen 233 HVIAASNDKNLRLWNVDSLRLRHTLSG--HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIV 309 (459)
T ss_pred eEEeecCCCceeeeeccchhhhhhhcc--cccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceE
Confidence 999999999999999998887766653 33333333333344558999999999999999987776543 224455566
Q ss_pred EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277 (446)
Q Consensus 198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (446)
.++ ..++||..|++||+||+|...+.+...
T Consensus 310 ~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~----------------------------------------------- 339 (459)
T KOG0288|consen 310 CSI---SDVISGHFDKKVRFWDIRSADKTRSVP----------------------------------------------- 339 (459)
T ss_pred ecc---eeeeecccccceEEEeccCCceeeEee-----------------------------------------------
Confidence 542 257899999999999999765543321
Q ss_pred ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee-cC
Q 013274 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ-TS 356 (446)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~-~~ 356 (446)
. .+.|++|..+++|..|.+.+.|.++++.|+.+.. ..+.+....+. ..
T Consensus 340 -----------------------------~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e-I~~~~sA~g~k~as 388 (459)
T KOG0288|consen 340 -----------------------------L-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE-IRQTFSAEGFKCAS 388 (459)
T ss_pred -----------------------------c-CcceeeEeeccCCeEEeeecCCCceeeeeccccc-EEEEeecccccccc
Confidence 1 2469999999999999999999999999998753 22223222111 22
Q ss_pred CCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccc--eEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274 357 KPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEY--VNCCCFSSQDQELYTGGNDRQILVWC 424 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~--v~~~~fSpd~~~lvtgs~D~~v~vW~ 424 (446)
-...+.|+|++.+++.++ .+.+.+|++.++++...+...... |++++|+|-|..|++++.++.+.+|.
T Consensus 389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 356789999999988864 578999999999998888766655 99999999999999999999999994
No 67
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.1e-26 Score=196.81 Aligned_cols=305 Identities=17% Similarity=0.265 Sum_probs=211.7
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
++++|.+.|++|+|+. +|++|+|++.|++|+||++.+=+. . -|+.+. .....+|. +.+.|.|.-..
T Consensus 81 ~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~---~----eHr~~R---~nve~dhp---T~V~FapDc~s 146 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFEN---K----EHRCIR---QNVEYDHP---TRVVFAPDCKS 146 (420)
T ss_pred hhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhh---h----hhhHhh---ccccCCCc---eEEEECCCcce
Confidence 4689999999999985 799999999999999999875221 1 122211 11123454 34567775556
Q ss_pred EEEEEeCCCeEEEEECCC---CeeeEEEe------cC--CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee
Q 013274 118 LFVTGSYDHYVKVWDTNC---TRVVMNFK------MP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL 186 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~---~~~~~~~~------~~--~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l 186 (446)
.++++-.-.++++|-+.. |..-..+. .+ ..+.-+. .....+..+|++++.|..|.+|+++ |..+..+
T Consensus 147 ~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~-iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i 224 (420)
T KOG2096|consen 147 VVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIIN-IGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI 224 (420)
T ss_pred EEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEE-EeecCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence 677777778899997642 21111111 00 0111111 1122356789999999999999999 7777777
Q ss_pred eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274 187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP 266 (446)
Q Consensus 187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (446)
...+..-...+.||+|+. +++++.--.|++|.+--++ +
T Consensus 225 dtnq~~n~~aavSP~GRF-ia~~gFTpDVkVwE~~f~k-----d------------------------------------ 262 (420)
T KOG2096|consen 225 DTNQSSNYDAAVSPDGRF-IAVSGFTPDVKVWEPIFTK-----D------------------------------------ 262 (420)
T ss_pred ccccccccceeeCCCCcE-EEEecCCCCceEEEEEecc-----C------------------------------------
Confidence 666666667788999985 6888888899999752110 0
Q ss_pred cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC----c
Q 013274 267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG----R 342 (446)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~----~ 342 (446)
|..+ .......+.||...|..++|+++...++|.|.||++|+||+.-. +
T Consensus 263 ---------------------G~fq------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 263 ---------------------GTFQ------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred ---------------------cchh------hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 0000 00111235799999999999999999999999999999997631 1
Q ss_pred e--eeeee-eEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEe-cccccceEEEEEcCCCCEEEEeeCCC
Q 013274 343 N--TLVNF-ETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDR 418 (446)
Q Consensus 343 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l-~gH~~~v~~~~fSpd~~~lvtgs~D~ 418 (446)
. .+... ..+....+.+.++..+|++..++++..+.++++...+++...++ ..|...|.|++|+|||++++||+ |+
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 0 00000 11111234678899999999999999999999999998877766 46999999999999999999998 68
Q ss_pred cEEEeC-CCCC
Q 013274 419 QILVWC-PSRH 428 (446)
Q Consensus 419 ~v~vW~-~~~~ 428 (446)
-++|.. .++.
T Consensus 395 ~vrv~~ntpg~ 405 (420)
T KOG2096|consen 395 YVRVIRNTPGW 405 (420)
T ss_pred eeeeecCCCch
Confidence 888884 4433
No 68
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=200.47 Aligned_cols=292 Identities=20% Similarity=0.371 Sum_probs=219.7
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+.||...|+.++... .-..+.|+|.|.+.+||-++++.+.. ...||.+.|.++.|++ .+.+
T Consensus 144 ~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~-----------------~Y~GH~GSVNsikfh~-s~~L 204 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLA-----------------TYTGHTGSVNSIKFHN-SGLL 204 (481)
T ss_pred hcccccceeeehhhc-CCcceeecccccceeEEeecccccee-----------------eecccccceeeEEecc-ccce
Confidence 458999999999864 34589999999999999999887531 1259999999999997 6889
Q ss_pred EEEEeCCCeEEEEECC----CCe-----------e---------------------eE--EEecCCceEEeeeccCCCCc
Q 013274 119 FVTGSYDHYVKVWDTN----CTR-----------V---------------------VM--NFKMPGKVYRTAMSPLAASH 160 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~----~~~-----------~---------------------~~--~~~~~~~~~~~~~~~~~~~~ 160 (446)
++|+|.|++..||... ..+ . ++ ...+.++..-+..+..-.+.
T Consensus 205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg 284 (481)
T KOG0300|consen 205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG 284 (481)
T ss_pred EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc
Confidence 9999999999999621 000 0 00 00011111111112222344
Q ss_pred eEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCC
Q 013274 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240 (446)
Q Consensus 161 ~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 240 (446)
..+++++.|.+..+||++++.++..|.||..+.+.++-.|..+ +++++|.|.+.|+||+|.. +..
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFRea--I~s------------ 349 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREA--IQS------------ 349 (481)
T ss_pred ceeeeeeccccceeeeeccCceeccccCcchhccccccCCcce-EEEEeccCceeEeccchhh--cce------------
Confidence 5688999999999999999999999999999999999998865 5789999999999998731 000
Q ss_pred cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274 241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED 320 (446)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d 320 (446)
...+.||...|+++.|..|
T Consensus 350 -------------------------------------------------------------V~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 350 -------------------------------------------------------------VAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred -------------------------------------------------------------eeeecccccceeEEEEecC
Confidence 0013589999999999876
Q ss_pred CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCce----EEEeccc
Q 013274 321 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKT----CLTFRGH 395 (446)
Q Consensus 321 g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~----~~~l~gH 395 (446)
- .+++|+.|.+||+||+.+-+..+..+.. .+....++.+....+++.+.++ .+++||+.-..+ ....+||
T Consensus 369 d-~vVSgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH 443 (481)
T KOG0300|consen 369 D-RVVSGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH 443 (481)
T ss_pred C-ceeecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc
Confidence 5 5789999999999999987655443322 2345567777777788888775 789999954332 2356799
Q ss_pred ccceEEEEEcCCCC--EEEEeeCCCcEEEeCCCCCCC
Q 013274 396 YEYVNCCCFSSQDQ--ELYTGGNDRQILVWCPSRHIS 430 (446)
Q Consensus 396 ~~~v~~~~fSpd~~--~lvtgs~D~~v~vW~~~~~~~ 430 (446)
..-|.|++|+.+.- -|.||+-|+.+.-|.+..+.+
T Consensus 444 rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~~ 480 (481)
T KOG0300|consen 444 RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPTS 480 (481)
T ss_pred ceeeeeeeccccCcccccccccccceeeeeEecccCC
Confidence 99999999997643 478999999999999987764
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=201.80 Aligned_cols=278 Identities=19% Similarity=0.317 Sum_probs=217.1
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s 123 (446)
..+.++...+. ...++||+.|.++.++|...+... ..+.||...|+++.+++ +...++++|
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l-----------------~~~~Gh~kki~~v~~~~-~~~~v~~aS 280 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQIL-----------------ATLKGHTKKITSVKFHK-DLDTVITAS 280 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchhhhh-----------------hhccCcceEEEEEEecc-chhheeecC
Confidence 56777877764 578999999999999998655421 23469999999999887 778999999
Q ss_pred CCCeEEEEECCCCeeeE-EEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC--CCCCeEEEEEec
Q 013274 124 YDHYVKVWDTNCTRVVM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG--HRDGIMTVEWST 200 (446)
Q Consensus 124 ~D~~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~--h~~~v~sv~~s~ 200 (446)
.|..|+||......... ...+.+++..+..++ ++.+|++++.|+.+-+.|++++..+..... ..-.+++.+|+|
T Consensus 281 ad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~---tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 281 ADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP---TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred CcceEEeeccccccCccccccccccceeeeecc---CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence 99999999986544322 233456676666666 456999999999999999999987655443 334589999999
Q ss_pred CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274 201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 280 (446)
Q Consensus 201 ~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (446)
||- +|.+|..||.++|||+..+...
T Consensus 358 DgL-ifgtgt~d~~vkiwdlks~~~~------------------------------------------------------ 382 (506)
T KOG0289|consen 358 DGL-IFGTGTPDGVVKIWDLKSQTNV------------------------------------------------------ 382 (506)
T ss_pred Cce-EEeccCCCceEEEEEcCCcccc------------------------------------------------------
Confidence 985 7899999999999999754211
Q ss_pred cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC-CCe
Q 013274 281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS-KPI 359 (446)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~-~~~ 359 (446)
.++.+|.++|.+++|+.+|-||+++..|+.|++||++..+ .+.+...... ...
T Consensus 383 ----------------------a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~----n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 383 ----------------------AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK----NFKTIQLDEKKEVN 436 (506)
T ss_pred ----------------------ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc----ccceeeccccccce
Confidence 0234799999999999999999999999999999998754 2333333322 355
Q ss_pred EEEEcCCCcEEEEeCCCceEEEEee----cCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274 360 QLATTQDPAVVFVPCMTAVKAFDIW----SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
.+.+...+.++..+ +..++++-.. ++..+.++..|.+..+++.|..+.++|++||+|..+++..+
T Consensus 437 s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEcCCCCeEEee-cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 67777777777666 5566666554 56778899999999999999999999999999999998754
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-25 Score=206.60 Aligned_cols=282 Identities=22% Similarity=0.338 Sum_probs=213.5
Q ss_pred EeCCCccceeEEEeecCCC-CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 38 IVSPHKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~-~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
+.+.| .+|.+|+|+|... ++.+|+|. .+.||+..+.... ..+..-+..|+++.|-. ||
T Consensus 22 ~~ke~-~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~-----------------k~~srFk~~v~s~~fR~-DG 80 (487)
T KOG0310|consen 22 VHKEH-NSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVR-----------------KTFSRFKDVVYSVDFRS-DG 80 (487)
T ss_pred ccccc-CcceeEecCCCCCCceEEeccc--EEEEEecchhhhh-----------------hhHHhhccceeEEEeec-CC
Confidence 34445 5799999998554 34555443 6889987643211 11123455677776654 89
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s 195 (446)
.+||.|+..|.|+|+|..+...++.+. +..+++.+.|++. +..++++|+.|..+++||+.++..+..+.+|++.|.+
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~--d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ--DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEeccc--CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999999999999977654555443 3456777788875 4578999999999999999999877789999999999
Q ss_pred EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG 275 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (446)
.+|+|....+++|||-||+||+||+|.... ..
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v----------------------------------------------- 190 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTS-RV----------------------------------------------- 190 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCc-ee-----------------------------------------------
Confidence 999999888899999999999999986310 00
Q ss_pred eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274 276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 355 (446)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~ 355 (446)
....|..+|-.|.|-|.|..++|+|.. .||+||+.+|...+.... .+.
T Consensus 191 ----------------------------~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~---~H~ 238 (487)
T KOG0310|consen 191 ----------------------------VELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMF---NHN 238 (487)
T ss_pred ----------------------------EEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhh---ccc
Confidence 012466789999999999999998755 699999998765433211 123
Q ss_pred CCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274 356 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423 (446)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW 423 (446)
....++.+..++..+++++. ..+++||+.+.+.+..+. -.++|.+++.|||++.+|-|-.||.+.+-
T Consensus 239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence 34556777777788887765 589999988888777654 45789999999999999999999999887
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.7e-26 Score=205.40 Aligned_cols=212 Identities=27% Similarity=0.529 Sum_probs=168.8
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcC--CCCCCc----------cccccceEEeccccccCccccE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATD--YEGGGH----------IAKHRSVFVVDKQHEHGHKYAI 106 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~gh~~~V 106 (446)
..||.++|-+++..+ ++..++|||-|.+++||+.++... ++.... ..+.+. ......||...|
T Consensus 189 ~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~----P~vtl~GHt~~V 263 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT----PLVTLEGHTEPV 263 (423)
T ss_pred hcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC----ceEEecccccce
Confidence 349999999999986 577899999999999999432211 111000 000000 011346999999
Q ss_pred eEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---ee
Q 013274 107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---IS 183 (446)
Q Consensus 107 ~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~---~~ 183 (446)
.++.|.+ ...++|+|+|++|+.||++++..+.++..+...+++...+. ..+|++|+.|..+++||.+++. ..
T Consensus 264 s~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~---~~Ll~~gssdr~irl~DPR~~~gs~v~ 338 (423)
T KOG0313|consen 264 SSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPL---SKLLASGSSDRHIRLWDPRTGDGSVVS 338 (423)
T ss_pred eeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccc---cceeeecCCCCceeecCCCCCCCceeE
Confidence 9999976 56899999999999999999999988888777888888774 4589999999999999998773 56
Q ss_pred eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccccCCCCCcC
Q 013274 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVK 262 (446)
Q Consensus 184 ~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (446)
++|.||++-|.++.|+|.+.+.|+|++.|+++++||+|..+ .+.
T Consensus 339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply----------------------------------- 383 (423)
T KOG0313|consen 339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY----------------------------------- 383 (423)
T ss_pred EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcce-----------------------------------
Confidence 78999999999999999999999999999999999998642 110
Q ss_pred CCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274 263 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 337 (446)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd 337 (446)
...+|...|.++.|. ++.+++|||.|.+|+++.
T Consensus 384 -----------------------------------------dI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 384 -----------------------------------------DIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred -----------------------------------------eeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 124678889999997 477999999999999984
No 72
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1e-24 Score=201.34 Aligned_cols=245 Identities=29% Similarity=0.489 Sum_probs=196.6
Q ss_pred cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (446)
Q Consensus 100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~ 178 (446)
.+|+..|.++.++| +++++++++.|+.|++|++.+++....+... ..+..+.+.+.. ..+++++.|+.|++||++
T Consensus 6 ~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 6 KGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG---TYLASGSSDKTIRLWDLE 81 (289)
T ss_pred cccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC---CEEEEEcCCCeEEEEEcC
Confidence 58999999999987 6789999999999999999887766555433 334466676643 578889999999999999
Q ss_pred CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274 179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN 258 (446)
Q Consensus 179 ~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (446)
+++....+..|...+.++.|+|+++ ++++++.|+.|++||+++.+....+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~----------------------------- 131 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTL----------------------------- 131 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEe-----------------------------
Confidence 9888888999999999999999865 5677778999999998754322211
Q ss_pred CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274 259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 338 (446)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~ 338 (446)
..|...|.++.|+|++.++++++.|+.|++||+
T Consensus 132 -----------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 132 -----------------------------------------------RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred -----------------------------------------------ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 135567999999999999998888999999999
Q ss_pred CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC
Q 013274 339 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 417 (446)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D 417 (446)
.+++... ...........+.+.+++..+++++ ...+++||+.+++....+..|...+.+++|+|++.++++++.|
T Consensus 165 ~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 165 RTGKCVA----TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred cccccce----eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 8654321 1122233456678888886666554 5789999999999999998999999999999999999999999
Q ss_pred CcEEEeCCCCCC
Q 013274 418 RQILVWCPSRHI 429 (446)
Q Consensus 418 ~~v~vW~~~~~~ 429 (446)
+.|++|+.....
T Consensus 241 ~~i~i~~~~~~~ 252 (289)
T cd00200 241 GTIRVWDLRTGE 252 (289)
T ss_pred CcEEEEEcCCce
Confidence 999999998544
No 73
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.1e-26 Score=192.89 Aligned_cols=245 Identities=21% Similarity=0.349 Sum_probs=184.8
Q ss_pred eEEEeecCCCCEEEEe-e------CCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 47 NSLQVDLTEERYLLSG-A------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 47 ~~l~~s~~~~~~l~s~-s------~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
++++|||-..+.|+.+ + ..|++.|-++....- + ..+ ++ ..-...+..++|++....++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g------i---~e~-----~s-~d~~D~LfdV~Wse~~e~~~ 76 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG------I---QEC-----QS-YDTEDGLFDVAWSENHENQV 76 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCC------e---EEE-----Ee-eecccceeEeeecCCCcceE
Confidence 7899998755555444 2 236677777652211 0 000 00 12345677889998888899
Q ss_pred EEEeCCCeEEEEECCCC-eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274 120 VTGSYDHYVKVWDTNCT-RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~ 197 (446)
++++-||++++||+.-. .++..++ +...++++.+.... ...++++|-|++||+||..-++.++++.||...|..+.
T Consensus 77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~--r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVR--RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA 154 (311)
T ss_pred EEEecCceEEEeccCCCCcchhHHHhhhhheEEecccccc--ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence 99999999999996432 3455444 33457777776643 35677779999999999999999999999999999999
Q ss_pred EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277 (446)
Q Consensus 198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (446)
|+|....+++++|.|++.++||+|..+....
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~------------------------------------------------- 185 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMS------------------------------------------------- 185 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecCCCceeE-------------------------------------------------
Confidence 9999989999999999999999985421111
Q ss_pred ecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 356 (446)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~ 356 (446)
..+|...|.++.|+. +...|+||+.|+.||+||+++-+.
T Consensus 186 ---------------------------i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~------------- 225 (311)
T KOG0277|consen 186 ---------------------------IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT------------- 225 (311)
T ss_pred ---------------------------EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-------------
Confidence 235677799999986 456899999999999999986432
Q ss_pred CCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCC-CEEEEeeCCCcEEEeCCCCC
Q 013274 357 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~-~~lvtgs~D~~v~vW~~~~~ 428 (446)
++..|.||.-.|..+.|||-. ..|+|||.|-++|||+++..
T Consensus 226 -------------------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 226 -------------------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred -------------------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 123457899999999999975 56889999999999999844
No 74
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.4e-25 Score=216.67 Aligned_cols=256 Identities=18% Similarity=0.359 Sum_probs=195.6
Q ss_pred ceeccccceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEe
Q 013274 28 STLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAIS 107 (446)
Q Consensus 28 ~~~~~~~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 107 (446)
..+.|...-.-+-.|.|+|..+.|.| ...++|||+.|-+|+|||.++..+. .++.||-.-|.
T Consensus 36 WDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrcl-----------------ftL~GHlDYVR 97 (1202)
T KOG0292|consen 36 WDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCL-----------------FTLLGHLDYVR 97 (1202)
T ss_pred ehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceeh-----------------hhhccccceeE
Confidence 34444443333568999999999997 4679999999999999998765532 23468999999
Q ss_pred EEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-------
Q 013274 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS------- 179 (446)
Q Consensus 108 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~------- 179 (446)
.+.|++ .-..++|+|+|.|||||+-.+++++..++.+.+ +.+..|+| ...+++|+|.|-+|+|||+..
T Consensus 98 t~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp---tEDlIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 98 TVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP---TEDLIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred EeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC---ccceEEEecccceEEEEeecchhccCCC
Confidence 888876 456999999999999999999999988775444 55666666 456899999999999999841
Q ss_pred -C---------------------ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccccccc
Q 013274 180 -G---------------------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG 237 (446)
Q Consensus 180 -~---------------------~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 237 (446)
+ .....+.||.-.|..++|.|.-+ +++||+.|..|++|.+...+..
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaW----------- 241 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAW----------- 241 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccce-----------
Confidence 1 01235789999999999999877 5899999999999987532100
Q ss_pred CCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEE
Q 013274 238 RRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV 317 (446)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~f 317 (446)
. .+...+|.+.|+++.|
T Consensus 242 ---------------------------------------------------E------------vDtcrgH~nnVssvlf 258 (1202)
T KOG0292|consen 242 ---------------------------------------------------E------------VDTCRGHYNNVSSVLF 258 (1202)
T ss_pred ---------------------------------------------------e------------ehhhhcccCCcceEEe
Confidence 0 0123589999999999
Q ss_pred ccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEee
Q 013274 318 TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW 384 (446)
Q Consensus 318 s~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 384 (446)
+|....++|.|.|++||+||+...+.. ...+.....=-.++..|...+++.+.++.+.+|.+.
T Consensus 259 hp~q~lIlSnsEDksirVwDm~kRt~v----~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 259 HPHQDLILSNSEDKSIRVWDMTKRTSV----QTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred cCccceeEecCCCccEEEEecccccce----eeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 999999999999999999999876432 222222233345677778888887878888888775
No 75
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=5.2e-26 Score=216.52 Aligned_cols=312 Identities=19% Similarity=0.295 Sum_probs=225.6
Q ss_pred CCccceeEEEeec-----------CCCCEEEEeeCCCcEEEEEcccCcC---CCCC---------------Cccccccce
Q 013274 41 PHKGSINSLQVDL-----------TEERYLLSGASDSSVAVYDVQRATD---YEGG---------------GHIAKHRSV 91 (446)
Q Consensus 41 ~H~~~v~~l~~s~-----------~~~~~l~s~s~Dg~i~lWd~~~~~~---~~~~---------------~~~~~~~~~ 91 (446)
-|+..|+.+..-| +.+. ++|+|+|++||+||++.... +... ..++.....
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence 4778888775322 2233 78999999999999875321 1000 000000000
Q ss_pred EEecc--ccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeC
Q 013274 92 FVVDK--QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTE 168 (446)
Q Consensus 92 ~~~~~--~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~ 168 (446)
-.+++ ....+.+.+|.+++.+| ++++||+|..-|+++|+++..-.....+. +...+.++.++.-.....+||+++.
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence 00000 01235667899999987 89999999999999999997655544443 3455777777765556679999999
Q ss_pred CCcEEEEeCCCC-ceeeeeeCCCCCeEEEEEecCC-CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccc
Q 013274 169 DVQVRLCDIASG-AISQTLSGHRDGIMTVEWSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK 246 (446)
Q Consensus 169 d~~v~vwd~~~~-~~~~~l~~h~~~v~sv~~s~~~-~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (446)
|..|+|+|+... .+++++.+|...|++|.|.-++ +.-|+|++.|..|.+--.++...-+.+...
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~-------------- 590 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH-------------- 590 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc--------------
Confidence 999999999765 5778999999999999998766 345889999998765432221100000000
Q ss_pred eeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEE
Q 013274 247 VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS 326 (446)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s 326 (446)
..... ...+..|+..|..+++++
T Consensus 591 --------------------------------------------------------t~t~~-ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 591 --------------------------------------------------------TQTLS-KTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred --------------------------------------------------------ccccc-cceEEEeeeCCCcceEEE
Confidence 00011 234788999999999999
Q ss_pred eecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEecccccceEEEEEc
Q 013274 327 AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFS 405 (446)
Q Consensus 327 gs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH~~~v~~~~fS 405 (446)
+..|+.|||||++++++.. .|..-..+.+..+.+...|.+.+++..|.+ .+-++|..+++++.+..||...|+.|.|+
T Consensus 614 ~cQDrnirif~i~sgKq~k-~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVK-SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred EecccceEEEeccccceee-eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 9999999999999987532 233323334567788899999998888765 78899999999999999999999999999
Q ss_pred CCCCEEEEeeCCCcEEEeCCC
Q 013274 406 SQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 406 pd~~~lvtgs~D~~v~vW~~~ 426 (446)
+|.+.|++.+.|++|.||.++
T Consensus 693 nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ccchhheeecCCceEEEEECc
Confidence 999999999999999999886
No 76
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.7e-26 Score=192.89 Aligned_cols=259 Identities=20% Similarity=0.354 Sum_probs=196.7
Q ss_pred eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEE-eecC
Q 013274 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW-YPVD 115 (446)
Q Consensus 37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~-~~~~ 115 (446)
++.+.|...|..+.++. .|+.|||+|+|++|||+.+...... .+ ..++.||.++|+.+.| +|.-
T Consensus 5 ~idt~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s-----------~l---l~~L~Gh~GPVwqv~wahPk~ 69 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQS-----------KL---LAELTGHSGPVWKVAWAHPKF 69 (299)
T ss_pred ehhhhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCc-----------ee---eeEecCCCCCeeEEeeccccc
Confidence 45678999999998875 5789999999999999998654310 01 1245799999999999 5677
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC---ceeeeeeCC
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG---AISQTLSGH 189 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~---~~~~~l~~h 189 (446)
|.+|||+|+|+.|.||.-..++-.+.+. +.+.++++++.|... ..+||+++.||.|.|.+.++. .-.+....|
T Consensus 70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey-gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY-GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeeccccccc-ceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 8999999999999999988875443333 345688899988765 467899999999999998765 123455679
Q ss_pred CCCeEEEEEecC---C----------CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274 190 RDGIMTVEWSTS---S----------EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG 256 (446)
Q Consensus 190 ~~~v~sv~~s~~---~----------~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (446)
.-.|++|+|.|. + -.-|+||+.|+.|+||+...+.
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------------------------------- 196 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------------------------------- 196 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--------------------------------
Confidence 999999999987 3 0237999999999999875421
Q ss_pred CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC----CEEEEeecCCc
Q 013274 257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG----MYLLSAGSDSR 332 (446)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg----~~l~sgs~D~~ 332 (446)
+.....+.+|.+.|+.+++.|.- .+|+|+|.||+
T Consensus 197 ------------------------------------------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 197 ------------------------------------------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred ------------------------------------------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 00011246899999999999964 48999999999
Q ss_pred EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEE
Q 013274 333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY 412 (446)
Q Consensus 333 i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv 412 (446)
+-||...... + -|+.++++. -...++.+.||+-|..|+
T Consensus 235 viIwt~~~e~------e---------------------------------~wk~tll~~---f~~~~w~vSWS~sGn~La 272 (299)
T KOG1332|consen 235 VIIWTKDEEY------E---------------------------------PWKKTLLEE---FPDVVWRVSWSLSGNILA 272 (299)
T ss_pred EEEEEecCcc------C---------------------------------ccccccccc---CCcceEEEEEeccccEEE
Confidence 9999654210 0 012222233 236789999999999999
Q ss_pred EeeCCCcEEEeCCCC
Q 013274 413 TGGNDRQILVWCPSR 427 (446)
Q Consensus 413 tgs~D~~v~vW~~~~ 427 (446)
.++.|+.|.+|..+.
T Consensus 273 Vs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 273 VSGGDNKVTLWKENV 287 (299)
T ss_pred EecCCcEEEEEEeCC
Confidence 999999999996653
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3e-25 Score=202.04 Aligned_cols=300 Identities=19% Similarity=0.336 Sum_probs=216.4
Q ss_pred eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCC---CCCcccc-ccceEEeccccccCccccEeEEEEe
Q 013274 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE---GGGHIAK-HRSVFVVDKQHEHGHKYAISSAIWY 112 (446)
Q Consensus 37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~gh~~~V~~~~~~ 112 (446)
.+...|.-+|.+|.+++ ++.+..++|.|++|.-|++.++.... ....+.+ +..- . +.+..+|...+.+++.+
T Consensus 136 ~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~--~-k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNP--L-KESRKGHVKEILTLAVS 211 (479)
T ss_pred eeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCC--C-CcccccccceeEEEEEc
Confidence 34578999999999986 57889999999999999998775321 0000000 1100 0 11114899999999998
Q ss_pred ecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274 113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (446)
Q Consensus 113 ~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~ 191 (446)
+ |+++||||+.|..|.||+..+.+.+..+.. .+.+.+++|-. +...+.+++.|.+|++|+++...++.++.||++
T Consensus 212 ~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~---gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 212 S-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK---GTSELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred C-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec---CccceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 7 899999999999999999999998887653 34455555543 234578889999999999999999999999999
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA 271 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (446)
.|.+|....-.+ ++..|+.|+++++|++.... +.
T Consensus 288 ~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ees--ql------------------------------------------- 321 (479)
T KOG0299|consen 288 GVLGIDALSRER-CVTVGGRDRTVRLWKIPEES--QL------------------------------------------- 321 (479)
T ss_pred ceeeechhcccc-eEEeccccceeEEEeccccc--ee-------------------------------------------
Confidence 999998765443 55556699999999984211 00
Q ss_pred CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274 272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 351 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~ 351 (446)
...+|.+.+-|++|-.+. .++|||.||.|.+|++.+.++.+..-...
T Consensus 322 --------------------------------ifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 322 --------------------------------IFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred --------------------------------eeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeEeeccc
Confidence 123556778899987554 57799999999999999877544321111
Q ss_pred EeecC--------CCeEEEEcCCCcEEEEeCC-CceEEEEeecC----ceEEEecccccceEEEEEcCCCCEEE-EeeCC
Q 013274 352 RLQTS--------KPIQLATTQDPAVVFVPCM-TAVKAFDIWSG----KTCLTFRGHYEYVNCCCFSSQDQELY-TGGND 417 (446)
Q Consensus 352 ~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~----~~~~~l~gH~~~v~~~~fSpd~~~lv-tgs~D 417 (446)
..... -...++..+...++++++. +.+++|.+.++ .++..++ -.+.|+.++|+++|++|+ ..+-.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccc
Confidence 11111 2345777788888888754 68999999887 3445555 678999999999999655 44555
Q ss_pred CcEEEeC
Q 013274 418 RQILVWC 424 (446)
Q Consensus 418 ~~v~vW~ 424 (446)
.-+=-|-
T Consensus 448 hRlGRW~ 454 (479)
T KOG0299|consen 448 HRLGRWW 454 (479)
T ss_pred cccceee
Confidence 5555553
No 78
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.2e-24 Score=214.81 Aligned_cols=172 Identities=20% Similarity=0.373 Sum_probs=134.7
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
.+.+|.+.|.+++|+|.++.+|+|||.|++|+|||+.++..... .+ ..++ ....+|...|.++.|+|....
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--~i--~~p~-----~~L~gH~~~V~sVaf~P~g~~ 139 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--EI--KDPQ-----CILKGHKKKISIIDWNPMNYY 139 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--cc--ccce-----EEeecCCCcEEEEEECCCCCe
Confidence 46799999999999986678999999999999999975421000 00 0011 123589999999999985555
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE-
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV- 196 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv- 196 (446)
+|+|+|.|++|+|||+.+++.+..+.+...+.+++|++. +.+|++++.|+.|+|||++++..+..+.+|.+.+.+.
T Consensus 140 iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswspd---G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~ 216 (568)
T PTZ00420 140 IMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK---GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKN 216 (568)
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCC---CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEE
Confidence 678999999999999999887777776677888888875 4588999999999999999999999999998875433
Q ss_pred ----EEecCCCeEEEEeeCCC----cEEEEEccC
Q 013274 197 ----EWSTSSEWILVTGGCDG----AIRFWDIRR 222 (446)
Q Consensus 197 ----~~s~~~~~~l~S~s~Dg----~I~iWd~~~ 222 (446)
.|++++++ ++|++.|+ +|+|||+++
T Consensus 217 v~~~~fs~d~~~-IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 217 IWIDGLGGDDNY-ILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEeeeEcCCCCE-EEEEEcCCCCccEEEEEECCC
Confidence 34577775 56777664 799999985
No 79
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.5e-25 Score=222.03 Aligned_cols=301 Identities=16% Similarity=0.253 Sum_probs=209.6
Q ss_pred CCccceeEEEeecCCCCEEEEee--CCCcEEEEEcccCcC-CC-CCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 41 PHKGSINSLQVDLTEERYLLSGA--SDSSVAVYDVQRATD-YE-GGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s--~Dg~i~lWd~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
.+...|+++..+| ++..++||+ .|+.++||+.+..-. .+ ....+.++ + ..-..|.+.|.|+.|++ ||
T Consensus 11 H~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~--l-----~~m~~h~~sv~CVR~S~-dG 81 (942)
T KOG0973|consen 11 HNEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKH--L-----CTMDDHDGSVNCVRFSP-DG 81 (942)
T ss_pred cCCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchh--h-----eeeccccCceeEEEECC-CC
Confidence 3457899999997 678899999 999999999653211 00 00001111 1 11246999999998987 89
Q ss_pred cEEEEEeCCCeEEEEECCC-------C-----------eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274 117 GLFVTGSYDHYVKVWDTNC-------T-----------RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~-------~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~ 177 (446)
++||+||+|+.|.||.-+. + ++...+. +.+.+..++++| +..++++++.|++|.+||.
T Consensus 82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp---~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP---DDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC---CccEEEEecccceEEEEcc
Confidence 9999999999999999762 0 1122222 344566777777 4469999999999999999
Q ss_pred CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ 257 (446)
Q Consensus 178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (446)
.+.+.++.+.+|.+.|..|.|.|-|++ |+|-+.|++|++|++.+-++.+++.............
T Consensus 159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky-~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f--------------- 222 (942)
T KOG0973|consen 159 KTFELLKVLRGHQSLVKGVSWDPIGKY-FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF--------------- 222 (942)
T ss_pred ccceeeeeeecccccccceEECCccCe-eeeecCCceEEEEEcccceeeEeeccchhhCCCccee---------------
Confidence 999999999999999999999999996 7999999999999987766666664433221111000
Q ss_pred CCCcCCCCccccccCCCceeecccceeecC-------CccccccCCCcccccccccccccCeEEEEEccC--------C-
Q 013274 258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAK-------GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED--------G- 321 (446)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d--------g- 321 (446)
.-..++|.|.+.+. .....-+..+.+.....+.||.+++.++.|+|. |
T Consensus 223 ----------------~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 223 ----------------LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred ----------------eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence 00112222222111 111222333445555567899999999999971 1
Q ss_pred ----C----EEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEec
Q 013274 322 ----M----YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR 393 (446)
Q Consensus 322 ----~----~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~ 393 (446)
. .+|+||.|++|-||.....++.++..+ +
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~------------------------------------------l- 323 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN------------------------------------------L- 323 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh------------------------------------------h-
Confidence 1 578999999999998765543221100 0
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 394 GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 394 gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
-...|.+++|||||..|..||.||+|.+...+...
T Consensus 324 -f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 324 -FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred -hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 12469999999999999999999999999887543
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=205.94 Aligned_cols=238 Identities=23% Similarity=0.365 Sum_probs=190.6
Q ss_pred ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce
Q 013274 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (446)
Q Consensus 104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~ 182 (446)
..|.++.|+|....-+|+++. -.+.|++..+....+++. ....++++.|-.+ +.++|+|...|.|+|||.++...
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D---G~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD---GRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred CcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecC---CeEEEccCCcCcEEEeccccHHH
Confidence 468888998866655665553 479999988777666443 3455777777654 56999999999999999877778
Q ss_pred eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcC
Q 013274 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVK 262 (446)
Q Consensus 183 ~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (446)
++.+.+|+.+|..+.|+|.+..+|++|+.|+.+++||+.+... .+
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~--------------------------------- 147 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QA--------------------------------- 147 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EE---------------------------------
Confidence 8999999999999999999998999999999999999876421 00
Q ss_pred CCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcC
Q 013274 263 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESG 341 (446)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~ 341 (446)
...+|.+.|+|.+|+|.. ..++|||-||+||+||+.+.
T Consensus 148 -----------------------------------------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 148 -----------------------------------------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred -----------------------------------------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 124789999999999964 58999999999999999875
Q ss_pred ceeeeeeeEEEeecCCC-eEEEEcCCCcEEEEeCCCceEEEEeecCceEEE-ecccccceEEEEEcCCCCEEEEeeCCCc
Q 013274 342 RNTLVNFETVRLQTSKP-IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLT-FRGHYEYVNCCCFSSQDQELYTGGNDRQ 419 (446)
Q Consensus 342 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-l~gH~~~v~~~~fSpd~~~lvtgs~D~~ 419 (446)
...... +..+.+ -.+.+-|.+.+++++++..+++||+.+|..+.. +..|.+.|+|+++..|++.|+|||-|+.
T Consensus 187 ~~~v~e-----lnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 187 TSRVVE-----LNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred CceeEE-----ecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 432222 233333 346677888999999999999999997765544 4449999999999999999999999999
Q ss_pred EEEeCCC
Q 013274 420 ILVWCPS 426 (446)
Q Consensus 420 v~vW~~~ 426 (446)
|+|++..
T Consensus 262 VKVfd~t 268 (487)
T KOG0310|consen 262 VKVFDTT 268 (487)
T ss_pred eEEEEcc
Confidence 9999955
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.1e-25 Score=208.31 Aligned_cols=272 Identities=19% Similarity=0.262 Sum_probs=208.5
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeE
Q 013274 49 LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYV 128 (446)
Q Consensus 49 l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i 128 (446)
|.|+. .+.|+.| ....|.+|+..++... .+ ..-+...|+++.+.+ +|++|+.|-.+|+|
T Consensus 183 ldWss--~n~laVa-lg~~vylW~~~s~~v~-------------~l----~~~~~~~vtSv~ws~-~G~~LavG~~~g~v 241 (484)
T KOG0305|consen 183 LDWSS--ANVLAVA-LGQSVYLWSASSGSVT-------------EL----CSFGEELVTSVKWSP-DGSHLAVGTSDGTV 241 (484)
T ss_pred hhccc--CCeEEEE-ecceEEEEecCCCceE-------------Ee----EecCCCceEEEEECC-CCCEEEEeecCCeE
Confidence 45652 3345444 6678999998765421 01 012267899999987 88999999999999
Q ss_pred EEEECCCCeeeEEEec--CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee-eeCCCCCeEEEEEecCCCeE
Q 013274 129 KVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTSSEWI 205 (446)
Q Consensus 129 ~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~-l~~h~~~v~sv~~s~~~~~~ 205 (446)
.|||..+.+.++.+.. .+.+-++++. ...+.+|+.|+.|..+|++....... +.+|...|..+.|++++..
T Consensus 242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~-----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~- 315 (484)
T KOG0305|consen 242 QIWDVKEQKKTRTLRGSHASRVGSLAWN-----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ- 315 (484)
T ss_pred EEEehhhccccccccCCcCceeEEEecc-----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe-
Confidence 9999988887776654 3445555554 35789999999999999998865544 8899999999999999875
Q ss_pred EEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceee
Q 013274 206 LVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 285 (446)
Q Consensus 206 l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (446)
+|||+.|+.+.|||.......
T Consensus 316 lASGgnDN~~~Iwd~~~~~p~----------------------------------------------------------- 336 (484)
T KOG0305|consen 316 LASGGNDNVVFIWDGLSPEPK----------------------------------------------------------- 336 (484)
T ss_pred eccCCCccceEeccCCCcccc-----------------------------------------------------------
Confidence 899999999999997432110
Q ss_pred cCCccccccCCCcccccccccccccCeEEEEEccC-CCEEEEe--ecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEE
Q 013274 286 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSA--GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA 362 (446)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~sg--s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (446)
.....|.++|.+++|+|- ...||+| +.|+.|++||..++.... . ....+.+..+.
T Consensus 337 -----------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~----~-vdtgsQVcsL~ 394 (484)
T KOG0305|consen 337 -----------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID----S-VDTGSQVCSLI 394 (484)
T ss_pred -----------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec----c-cccCCceeeEE
Confidence 012468889999999995 4578876 579999999999875321 1 11134555677
Q ss_pred EcCCCcEEEEeCC---CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 363 TTQDPAVVFVPCM---TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 363 ~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
.++...-+++..+ +.+.+|+.-+-+.+..+.||+.+|..+++||||..++||+.|.++++|+.-..
T Consensus 395 Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 395 WSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 7777655554432 47899999999999999999999999999999999999999999999987543
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=6.5e-25 Score=202.23 Aligned_cols=299 Identities=20% Similarity=0.281 Sum_probs=209.9
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+++|+..|.+|++.|+ |..++|||-|-+|++||++.-.. .....+. .+....|. |.++.+++ .+++
T Consensus 163 l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMda-----s~~~fr~-----l~P~E~h~--i~sl~ys~-Tg~~ 228 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDA-----SMRSFRQ-----LQPCETHQ--INSLQYSV-TGDQ 228 (641)
T ss_pred ccCCceEEEEeeecCC-CceeeeccccceEEEEecccccc-----cchhhhc-----cCcccccc--cceeeecC-CCCe
Confidence 6789999999999975 66799999999999999874321 1111111 12334554 66777776 6667
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEe----------cCCce---EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce-ee
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFK----------MPGKV---YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQ 184 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~-~~ 184 (446)
|+..+..-.++|+|-+..+...... ..||+ .+.+|+|+. ...+++++.|+++++||++..+. ..
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~--k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN--KEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc--ccceEEecCCCcEEEEecCCchhhee
Confidence 7666667789999976544433322 13444 445566653 35788999999999999987643 22
Q ss_pred eee-----CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274 185 TLS-----GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS 259 (446)
Q Consensus 185 ~l~-----~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (446)
.++ +-.-++++.+|+|++++ +|+|+.||.|.+||.++...-..+
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~------------------------------ 355 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVM------------------------------ 355 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccce------------------------------
Confidence 222 33446899999999997 799999999999997542110000
Q ss_pred CcCCCCccccccCCCceeecccceeecCCccccccCCCccccccccccccc--CeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274 260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG--AVTGLKVTEDGMYLLSAGSDSRIRLWD 337 (446)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~fs~dg~~l~sgs~D~~i~lWd 337 (446)
....+|.. .|++|+||+||++|+|-|.|+++|+||
T Consensus 356 -------------------------------------------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 356 -------------------------------------------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred -------------------------------------------EeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 00124555 799999999999999999999999999
Q ss_pred cCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-------CceEEEEeecCceEEEecccccceEEEEEcCCCCE
Q 013274 338 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE 410 (446)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~ 410 (446)
+..-+..+.....+ .........+|+|+..+++.+.. ..+.++|-.+.+.+..+.--+..|..+.|+|-=+.
T Consensus 393 Lrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQ 471 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQ 471 (641)
T ss_pred ccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhh
Confidence 98754332211111 11223446789999888887643 13667777777888777777889999999999777
Q ss_pred EEEeeCCCcEEEe-CCCCC
Q 013274 411 LYTGGNDRQILVW-CPSRH 428 (446)
Q Consensus 411 lvtgs~D~~v~vW-~~~~~ 428 (446)
|..|+.||+++|+ +++.+
T Consensus 472 i~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 472 IFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred eeeecCCCceEEEECcccc
Confidence 7788889999988 77643
No 83
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=209.22 Aligned_cols=365 Identities=20% Similarity=0.286 Sum_probs=237.5
Q ss_pred eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD 125 (446)
Q Consensus 46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D 125 (446)
|++|.=-++.=+-++-|+++|.++|||++++.. + .++.++...|+++..+| --+.+|.|-.+
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~------------v-----~~f~~~~s~IT~ieqsP-aLDVVaiG~~~ 223 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV------------V-----YTFQEFFSRITAIEQSP-ALDVVAIGLEN 223 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEeccCcE------------E-----EEecccccceeEeccCC-cceEEEEeccC
Confidence 777754222334588999999999999987652 1 22356778899887777 45789999999
Q ss_pred CeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee-CCCCCeEEEEEecCCC
Q 013274 126 HYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSE 203 (446)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~-~h~~~v~sv~~s~~~~ 203 (446)
|+|.++++..++.+..|+.. |.+..++|..++ ..++|+|+..|.+.+||++..+++..+. .|.+.|....|.|..+
T Consensus 224 G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG--~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep 301 (910)
T KOG1539|consen 224 GTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG--NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP 301 (910)
T ss_pred ceEEEEEcccCcEEEEEEccccceeEEEeccCC--CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence 99999999999999999986 889888887654 4689999999999999999998887776 7999999999998766
Q ss_pred eEEEEeeCCCcEEEEEccCCc----eeEEeecccccc----------------cCCCcccccce---eecccccc-----
Q 013274 204 WILVTGGCDGAIRFWDIRRAG----CFRVLDQSQSQL----------------GRRPPLLKRKV---SISKSLSA----- 255 (446)
Q Consensus 204 ~~l~S~s~Dg~I~iWd~~~~~----~~~~~~~~~~~~----------------~~~~~~~~~~~---~~~~~~~~----- 255 (446)
+++|++.|+.+++|=..++. .+++-..+..+. +.......... .....+..
T Consensus 302 -Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~ 380 (910)
T KOG1539|consen 302 -VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK 380 (910)
T ss_pred -eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc
Confidence 78999999999999544221 111111110000 00000000000 00000000
Q ss_pred -------C------CCCCc------------------C------------CC------Cccc----cccCCCceeecccc
Q 013274 256 -------G------QNSSV------------------K------------PR------APQK----RSANGNGVRQSSVG 282 (446)
Q Consensus 256 -------~------~~~~~------------------~------------~~------~~~~----~~~~~~~~~~~~~~ 282 (446)
. ..... + .+ ...+ ...+...+..+..|
T Consensus 381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG 460 (910)
T KOG1539|consen 381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG 460 (910)
T ss_pred ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC
Confidence 0 00000 0 00 0000 00001112223332
Q ss_pred eeec----CCcccccc-CCCc-ccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274 283 RIPA----KGSVRQRL-HPGM-LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 356 (446)
Q Consensus 283 ~~~~----~~~~~~~~-~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~ 356 (446)
+... .|.+.... ..+. ........+|.++|++|+...-++.++|++.+|-+++||+.+.. ....++.. .
T Consensus 461 NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~----l~~~l~l~-~ 535 (910)
T KOG1539|consen 461 NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV----LKKSLRLG-S 535 (910)
T ss_pred ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc----eeeeeccC-C
Confidence 2211 11111100 0000 01111235899999999999999999999999999999998753 11222221 2
Q ss_pred CCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC-CCCCcC
Q 013274 357 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH-ISDGVD 434 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~-~~~~~~ 434 (446)
....+.......+++.+++ ..++++|+-+.+..+.|.||.+.|++++|||||+||++++.|++||+||+.++ ..|++.
T Consensus 536 ~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 536 SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence 2333444455555556555 57899999999999999999999999999999999999999999999999865 466655
Q ss_pred CC
Q 013274 435 AG 436 (446)
Q Consensus 435 ~~ 436 (446)
..
T Consensus 616 vd 617 (910)
T KOG1539|consen 616 VD 617 (910)
T ss_pred cC
Confidence 44
No 84
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.2e-24 Score=213.08 Aligned_cols=228 Identities=17% Similarity=0.241 Sum_probs=165.6
Q ss_pred eeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe----
Q 013274 62 GASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR---- 137 (446)
Q Consensus 62 ~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~---- 137 (446)
|+.++.|++|+..+.. .+ ....+|...|.++.|+|.++.+|+|||.|++|+|||+.++.
T Consensus 50 GG~~gvI~L~~~~r~~------------~v-----~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~ 112 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP------------PV-----IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK 112 (568)
T ss_pred CCceeEEEeeecCCCc------------eE-----EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc
Confidence 5678888888864321 11 12358999999999998668899999999999999997542
Q ss_pred ----eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCC
Q 013274 138 ----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD 212 (446)
Q Consensus 138 ----~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D 212 (446)
++..+. +.+.+..++|+|.. ..++++++.|+.|++||++++.....+. |...|.+++|+|++.. |++++.|
T Consensus 113 ~i~~p~~~L~gH~~~V~sVaf~P~g--~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~l-Lat~s~D 188 (568)
T PTZ00420 113 EIKDPQCILKGHKKKISIIDWNPMN--YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNL-LSGTCVG 188 (568)
T ss_pred ccccceEEeecCCCcEEEEEECCCC--CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCE-EEEEecC
Confidence 112222 34567888888853 3467899999999999999998777775 6688999999999984 7888999
Q ss_pred CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccc
Q 013274 213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 292 (446)
Q Consensus 213 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (446)
++|+|||++++..+..+.
T Consensus 189 ~~IrIwD~Rsg~~i~tl~-------------------------------------------------------------- 206 (568)
T PTZ00420 189 KHMHIIDPRKQEIASSFH-------------------------------------------------------------- 206 (568)
T ss_pred CEEEEEECCCCcEEEEEe--------------------------------------------------------------
Confidence 999999999876543332
Q ss_pred ccCCCcccccccccccccC-----eEEEEEccCCCEEEEeecCC----cEEEEecCcCceeeeeeeEEEeecCCCeEEEE
Q 013274 293 RLHPGMLSSQDRATAHYGA-----VTGLKVTEDGMYLLSAGSDS----RIRLWDVESGRNTLVNFETVRLQTSKPIQLAT 363 (446)
Q Consensus 293 ~~~~~~~~~~~~~~~h~~~-----v~~l~fs~dg~~l~sgs~D~----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (446)
+|.+. +....|++++.+|+|+|.|+ +|+|||+.+....+..
T Consensus 207 --------------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~---------------- 256 (568)
T PTZ00420 207 --------------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT---------------- 256 (568)
T ss_pred --------------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE----------------
Confidence 22222 33345778999999988774 7999998853211110
Q ss_pred cCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 364 TQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
..+..+.+.+.....++++.++++|+.|++|++|++...
T Consensus 257 --------------------------~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 257 --------------------------MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred --------------------------EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 011223444455555677999999999999999988644
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=212.42 Aligned_cols=252 Identities=27% Similarity=0.414 Sum_probs=193.3
Q ss_pred CCcccee---EEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 41 PHKGSIN---SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 41 ~H~~~v~---~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
.|-..|+ +++.+.+++++|.|||.||.|++|+.......... +. ....+.|..-|..++... +++
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~------~~-----~asme~HsDWVNDiiL~~-~~~ 86 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST------PY-----IASMEHHSDWVNDIILCG-NGK 86 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCccc------ch-----hhhhhhhHhHHhhHHhhc-CCC
Confidence 4556677 78888888999999999999999998654321100 00 112246888888776654 677
Q ss_pred EEEEEeCCCeEEEEECCCCe--eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--ee--------e
Q 013274 118 LFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--IS--------Q 184 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--~~--------~ 184 (446)
.|+|+|.|.+|++|+...+. +..++. +..-+.+++.. ..+..++|+|+.|+.|++||++++. .+ .
T Consensus 87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~--ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI--AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeec--ccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 99999999999999987652 333332 23335555542 3456799999999999999999872 22 2
Q ss_pred eee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCC
Q 013274 185 TLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKP 263 (446)
Q Consensus 185 ~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (446)
.+. ||...|.+++.++.+. ++++|+..+.+++||.|+.+.+
T Consensus 165 sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~ki------------------------------------- 206 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCKKI------------------------------------- 206 (735)
T ss_pred cCCCCCccceeeeecCCcce-EEEecCcccceEEeccccccce-------------------------------------
Confidence 334 8899999999998874 7899999999999998864311
Q ss_pred CCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce
Q 013274 264 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 343 (446)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~ 343 (446)
.++.||...|+.|..++||+.++|+|+||+||+||+...++
T Consensus 207 ---------------------------------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC 247 (735)
T KOG0308|consen 207 ---------------------------------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC 247 (735)
T ss_pred ---------------------------------------eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce
Confidence 12358999999999999999999999999999999875332
Q ss_pred eeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274 344 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423 (446)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW 423 (446)
+.++..|+..|+.+..+|+-+.+++|+.|+.|..=
T Consensus 248 ---------------------------------------------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 248 ---------------------------------------------LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred ---------------------------------------------eeeEEeccCceEEEeeCCCcceEEecCCCCcEEec
Confidence 24567799999999999999999999999999888
Q ss_pred CCCCC
Q 013274 424 CPSRH 428 (446)
Q Consensus 424 ~~~~~ 428 (446)
++..+
T Consensus 283 dl~n~ 287 (735)
T KOG0308|consen 283 DLRNP 287 (735)
T ss_pred ccCCc
Confidence 77654
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.2e-24 Score=205.34 Aligned_cols=281 Identities=19% Similarity=0.299 Sum_probs=201.0
Q ss_pred cceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeE-EEEe
Q 013274 34 NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISS-AIWY 112 (446)
Q Consensus 34 ~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~-~~~~ 112 (446)
.....+.+|+.-|..+++.+ +..++++|.||++++|+-...... +....++|++-|.. +++.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l---------------~~~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYL---------------ETHAFEGPKGFIANSICYA 67 (745)
T ss_pred eeEEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccc---------------cceecccCcceeeccceec
Confidence 34566889999999999863 457999999999999985433221 11234577777666 5555
Q ss_pred ecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274 113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (446)
Q Consensus 113 ~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~ 191 (446)
+.+..++++|+.|++|.+|.+.+..++..+.. .+.+.+++.-. +. .+++||.|.++++|-. +++...+.+|+.
T Consensus 68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~---~~-~~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 68 ESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE---DG-TLISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred cccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC---cC-ceEecccccceEEecc--hhhhcccCCcch
Confidence 55666899999999999999998888776652 33344443322 22 3899999999999975 455667999999
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA 271 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (446)
.|++|.+-|.+ .++|||.|.+||+|.- +.+++
T Consensus 142 sVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~-------------------------------------------- 173 (745)
T KOG0301|consen 142 SVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLK-------------------------------------------- 173 (745)
T ss_pred heeeeeecCCC--cEEeccCcceeeeccC--Cchhh--------------------------------------------
Confidence 99999999887 4689999999999963 22111
Q ss_pred CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274 272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 351 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~ 351 (446)
...+|.+.|+.|++-+++. ++|++.||.|++|++... ... ..
T Consensus 174 --------------------------------tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge-~l~----~~ 215 (745)
T KOG0301|consen 174 --------------------------------TFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGE-VLL----EM 215 (745)
T ss_pred --------------------------------hhccchhheeeeEEecCCC-eEeecCCceEEEEeccCc-eee----ee
Confidence 1357999999999998765 569999999999999543 211 11
Q ss_pred EeecCCCeEEEEcCCCcEEEE-eCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 352 RLQTSKPIQLATTQDPAVVFV-PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
..+.+....+....+...+++ +-+.++++|+.. ++...+.--+-.||++.+-++|. +|+|++||-||||..+
T Consensus 216 ~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 216 HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 122333444553344444444 445689999876 55555554455799999988874 6678899999999766
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-22 Score=167.34 Aligned_cols=306 Identities=21% Similarity=0.332 Sum_probs=216.1
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~ 120 (446)
.-+..|.+++|.| .|.+-+.||..++.+|--.....+.....+.....++... ....-|++.|+|.+|+| .+++++
T Consensus 30 ~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~--kr~khhkgsiyc~~ws~-~gelia 105 (350)
T KOG0641|consen 30 EDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLC--KRNKHHKGSIYCTAWSP-CGELIA 105 (350)
T ss_pred cchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEe--eeccccCccEEEEEecC-ccCeEE
Confidence 3457899999997 5678899999999998743322222111222222222221 22346899999999998 899999
Q ss_pred EEeCCCeEEEEECCCCee-----eEEEe-cCCceEEeeeccCCC-CceEEEEee-CCCcEEEEeCCCCceeeeeeCCCCC
Q 013274 121 TGSYDHYVKVWDTNCTRV-----VMNFK-MPGKVYRTAMSPLAA-SHMLIAAGT-EDVQVRLCDIASGAISQTLSGHRDG 192 (446)
Q Consensus 121 s~s~D~~i~iWd~~~~~~-----~~~~~-~~~~~~~~~~~~~~~-~~~~lasgs-~d~~v~vwd~~~~~~~~~l~~h~~~ 192 (446)
|||.|++|++--.+...+ ...+. +.|.+..++|..... +..+|++++ .|..|++-|...|...+.+.||.+-
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 999999999986653322 12233 345677777765432 344566654 5778888899999999999999999
Q ss_pred eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272 (446)
Q Consensus 193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (446)
|.++- +-+ .++++||+.|.+||+||+|-..|++.++.....-|
T Consensus 186 ilaly-swn-~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g----------------------------------- 228 (350)
T KOG0641|consen 186 ILALY-SWN-GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG----------------------------------- 228 (350)
T ss_pred EEEEE-Eec-CcEEEccCCCceEEEEeeeccceeeeccCcccCCC-----------------------------------
Confidence 99874 223 36899999999999999998877766542211000
Q ss_pred CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 352 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~ 352 (446)
-..+.|.+++..|.|++|++|-.|....+||+..++..+ .|.
T Consensus 229 ----------------------------------lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq-~f~--- 270 (350)
T KOG0641|consen 229 ----------------------------------LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ-RFH--- 270 (350)
T ss_pred ----------------------------------cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee-eeC---
Confidence 013468999999999999999999999999999887432 111
Q ss_pred eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCce-----EEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 353 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKT-----CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~-----~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
.+....-.+.|+|...+++..+- ..+++-|+. |.+ ......|++.+-.+.|+|..=-+++.|.|.++.+|.++
T Consensus 271 phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 12223445778887776665543 467777762 222 33456799999999999999889999999999999765
No 88
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=3.3e-25 Score=193.39 Aligned_cols=249 Identities=18% Similarity=0.356 Sum_probs=186.4
Q ss_pred CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec---------CCceEEeeeccCCCCceEEEEeeCCCc
Q 013274 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM---------PGKVYRTAMSPLAASHMLIAAGTEDVQ 171 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~lasgs~d~~ 171 (446)
|.+.-+-|..|+| |+++|+|||-||-|.+||..+|+..+.++. ...+.++.|+. +...+|+|+.||.
T Consensus 211 g~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR---DsEMlAsGsqDGk 286 (508)
T KOG0275|consen 211 GQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR---DSEMLASGSQDGK 286 (508)
T ss_pred ccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc---cHHHhhccCcCCc
Confidence 5566676777776 999999999999999999998876654432 34466667665 4468999999999
Q ss_pred EEEEeCCCCceeeeee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274 172 VRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS 250 (446)
Q Consensus 172 v~vwd~~~~~~~~~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (446)
|++|.+++|.+++.|. .|...|+++.|+.++.. +.|++.|.++|+--++.++|++.
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKE---------------------- 343 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKE---------------------- 343 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcch-hhcccccceEEEeccccchhHHH----------------------
Confidence 9999999999999987 89999999999999886 57999999999999988766432
Q ss_pred cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC
Q 013274 251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD 330 (446)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D 330 (446)
..+|.+.|+...|.+||.+++|++.|
T Consensus 344 ------------------------------------------------------frGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 344 ------------------------------------------------------FRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred ------------------------------------------------------hcCccccccceEEcCCCCeEEEecCC
Confidence 24788889999999999999999999
Q ss_pred CcEEEEecCcCceeeeeeeEEEeecCC-CeEEE-EcCCCc-EEEEeCCCceEEEEeecCceEEEeccc---ccceEEEEE
Q 013274 331 SRIRLWDVESGRNTLVNFETVRLQTSK-PIQLA-TTQDPA-VVFVPCMTAVKAFDIWSGKTCLTFRGH---YEYVNCCCF 404 (446)
Q Consensus 331 ~~i~lWd~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~l~gH---~~~v~~~~f 404 (446)
|+|++|+.++..+.. .|.... ... ...+. +..++. +++..-.+.+.+-++ .|+.+++|..- .+..-+++.
T Consensus 370 gtvkvW~~KtteC~~-Tfk~~~--~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLS-TFKPLG--TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ccEEEecCcchhhhh-hccCCC--CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEe
Confidence 999999998865421 121111 111 11122 222222 222223344444444 56777777532 355677889
Q ss_pred cCCCCEEEEeeCCCcEEEeCCCCCCCCCcC
Q 013274 405 SSQDQELYTGGNDRQILVWCPSRHISDGVD 434 (446)
Q Consensus 405 Spd~~~lvtgs~D~~v~vW~~~~~~~~~~~ 434 (446)
||-|.|++..++|+.+--+..-.+.+++++
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence 999999999999999999988777776654
No 89
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=1.5e-23 Score=185.85 Aligned_cols=257 Identities=16% Similarity=0.257 Sum_probs=187.1
Q ss_pred cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (446)
Q Consensus 98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~ 177 (446)
++..|+..|.++..+| +..+++|||.|....+|++.++..+..+ +++-.++....+..+..+||+|..+|.|+||+.
T Consensus 59 tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~el--tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGEL--TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEe--cCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 4568999999999998 7889999999999999999999865444 444334443344446679999999999999999
Q ss_pred CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ 257 (446)
Q Consensus 178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (446)
.++.....+..--+.+.-+.|+|-+. +|+.|+.||.+-+|.+.++...+.+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~---------------------------- 186 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVM---------------------------- 186 (399)
T ss_pred ccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEe----------------------------
Confidence 99998888876777889999999776 6889999999999998764333222
Q ss_pred CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274 258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 337 (446)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd 337 (446)
.+|..++++=.|.|||+.+++|..||+|++||
T Consensus 187 ------------------------------------------------~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 187 ------------------------------------------------SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred ------------------------------------------------cCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence 35777788888999999999999999999999
Q ss_pred cCcCceeeeee-------eEEEee----------cCCCeE----------EEEc--------------------CCC---
Q 013274 338 VESGRNTLVNF-------ETVRLQ----------TSKPIQ----------LATT--------------------QDP--- 367 (446)
Q Consensus 338 ~~~~~~~~~~~-------~~~~~~----------~~~~~~----------~~~~--------------------~~~--- 367 (446)
++++++....- ....+. ...+.. .+.. +..
T Consensus 219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 219 PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL 298 (399)
T ss_pred cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc
Confidence 99886532211 000000 000000 0000 000
Q ss_pred cEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcCCC
Q 013274 368 AVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAG 436 (446)
Q Consensus 368 ~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~~~ 436 (446)
.+.+.+. .+.+.+||+.+.++.+.+ -|...|..+.|-+ ..+|+|++.||+|+.||..++.+....-|
T Consensus 299 pL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 299 PLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred chhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 0011111 236788988776654444 4888899999998 78999999999999999998766554444
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.2e-24 Score=183.49 Aligned_cols=203 Identities=20% Similarity=0.366 Sum_probs=167.1
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~ 120 (446)
.|+--|.+++|+. |.++|+||+.++-+||+|++..... ..+..||.+.|..+.|... .+.++
T Consensus 98 ~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~Ap----------------p~E~~ghtg~Ir~v~wc~e-D~~iL 159 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAP----------------PKEISGHTGGIRTVLWCHE-DKCIL 159 (334)
T ss_pred hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCC----------------chhhcCCCCcceeEEEecc-CceEE
Confidence 6888899999985 6788999999999999999865432 1234689999999999864 45778
Q ss_pred EEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEec
Q 013274 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST 200 (446)
Q Consensus 121 s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~ 200 (446)
|+++|++||+||..+++.+..+..+.++.++.+++++. + ++-...+.|+.||.++-.+++.++ -...|.+.+++|
T Consensus 160 SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~---i-lTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P 234 (334)
T KOG0278|consen 160 SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR---I-LTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP 234 (334)
T ss_pred eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC---E-EEEecCceeEEeccccccceeecc-CccccccccccC
Confidence 88999999999999999999999999999988887543 3 344456789999999988887765 346789999999
Q ss_pred CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274 201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 280 (446)
Q Consensus 201 ~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (446)
+.. ++++|++|..++.||..++..+..+
T Consensus 235 ~k~-~fVaGged~~~~kfDy~TgeEi~~~--------------------------------------------------- 262 (334)
T KOG0278|consen 235 KKE-FFVAGGEDFKVYKFDYNTGEEIGSY--------------------------------------------------- 262 (334)
T ss_pred CCc-eEEecCcceEEEEEeccCCceeeec---------------------------------------------------
Confidence 875 6899999999999998876432110
Q ss_pred cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCc
Q 013274 281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 342 (446)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~ 342 (446)
..+|.++|.||.|+|||...++||.||+||||....++
T Consensus 263 ------------------------nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 263 ------------------------NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ------------------------ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 25799999999999999999999999999999876543
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=4e-24 Score=182.10 Aligned_cols=254 Identities=20% Similarity=0.349 Sum_probs=168.2
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
..||+|.|+|+..+ .+.+.|+|||.|.+++|||+++++..- .. .-...|..+.|+. ++.+
T Consensus 48 y~GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~tGk~la------------~~------k~~~~Vk~~~F~~-~gn~ 107 (327)
T KOG0643|consen 48 YDGHTGAVWCCDID-WDSKHLITGSADQTAKLWDVETGKQLA------------TW------KTNSPVKRVDFSF-GGNL 107 (327)
T ss_pred ecCCCceEEEEEec-CCcceeeeccccceeEEEEcCCCcEEE------------Ee------ecCCeeEEEeecc-CCcE
Confidence 56999999999997 467899999999999999999886421 10 1223566667765 5555
Q ss_pred EEEEeC-----CCeEEEEECC-------CCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceee
Q 013274 119 FVTGSY-----DHYVKVWDTN-------CTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQ 184 (446)
Q Consensus 119 l~s~s~-----D~~i~iWd~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~ 184 (446)
++.+.+ -+.|.++|+. ...+...++.+ ..+..+.+.+. ...|++|..||.|.+||+++| ..+.
T Consensus 108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l---~~~ii~Ghe~G~is~~da~~g~~~v~ 184 (327)
T KOG0643|consen 108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL---GETIIAGHEDGSISIYDARTGKELVD 184 (327)
T ss_pred EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc---CCEEEEecCCCcEEEEEcccCceeee
Confidence 554433 4789999987 34455555544 34555666664 357899999999999999998 4566
Q ss_pred eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccC-CCcccccceeeccccccCCCCCcCC
Q 013274 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR-RPPLLKRKVSISKSLSAGQNSSVKP 263 (446)
Q Consensus 185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (446)
...-|...|+.+.|+|+..+ ++|+|.|.+-++||.++..+++.+....+.... ..|... .+.+.....+..
T Consensus 185 s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d-~VilgGGqeA~d------ 256 (327)
T KOG0643|consen 185 SDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD-HVILGGGQEAMD------ 256 (327)
T ss_pred chhhhccccccccccCCcce-EEecccCccceeeeccceeeEEEeeecccccceecccccc-eEEecCCceeee------
Confidence 77889999999999999875 799999999999999998888877544332111 001100 000000000000
Q ss_pred CCccccccCCCceeecccceeecCCccccccCCCc-ccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274 264 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM-LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 339 (446)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~ 339 (446)
+.... ...+....+..... -....+.++|+|+|++|+|+|+|+..+||+.||.||+.-+.
T Consensus 257 ------------VTTT~----~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 257 ------------VTTTS----TRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ------------eeeec----ccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 00000 00000000000000 01123568999999999999999999999999999998554
No 92
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=190.31 Aligned_cols=304 Identities=17% Similarity=0.251 Sum_probs=208.6
Q ss_pred EeCCCccceeEEEeecCCC-CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 38 IVSPHKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~-~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
+.+.|.+.|++++|.|... +++|+|..-|+|-+||+.+... + ...+++ +.+|...|.++.|+|.+.
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-d-------~d~v~~-----f~~hs~~Vs~l~F~P~n~ 247 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-D-------KDGVYL-----FTPHSGPVSGLKFSPANT 247 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-c-------cCceEE-----eccCCccccceEecCCCh
Confidence 4567899999999999887 7888999999999999953221 1 111222 358999999999999999
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce-eeeeeCCCCCeEE
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGIMT 195 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~-~~~l~~h~~~v~s 195 (446)
.++++.|+||+||+=|++.......+........++...+......++.+..=|...+||++++.- ...+.-|...|.+
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITS 327 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccce
Confidence 999999999999999998765332222211111111111111222344444445899999998753 5666778889999
Q ss_pred EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG 275 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (446)
|+++|-..++|+|+|.|++.+|||+|+-.. +..|.
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~------------K~sp~--------------------------------- 362 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRG------------KASPF--------------------------------- 362 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcC------------CCCcc---------------------------------
Confidence 999999999999999999999999985310 00000
Q ss_pred eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecC---cCceeeeeee--E
Q 013274 276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE---SGRNTLVNFE--T 350 (446)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~---~~~~~~~~~~--~ 350 (446)
-....|.-+|.+..|||.|-.|+|.+.|.+|||||.. ........+. .
T Consensus 363 ---------------------------lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 363 ---------------------------LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred ---------------------------eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 0123577789999999998889999999999999984 1111111111 0
Q ss_pred EEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEeccccc-ce-EEEEEcCCCC-EEEEeeCCCcEEEeCCC
Q 013274 351 VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYE-YV-NCCCFSSQDQ-ELYTGGNDRQILVWCPS 426 (446)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~-~v-~~~~fSpd~~-~lvtgs~D~~v~vW~~~ 426 (446)
...+.-.+..+++.|+..+++++.. ..+-++|-..++++..|.+-.. .| .-..|+|-+. +++-++.-|.|.||.-.
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 1111223455778888888877644 5777888777777777665544 34 3457899877 55556667889888654
No 93
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=4e-24 Score=192.22 Aligned_cols=242 Identities=19% Similarity=0.278 Sum_probs=181.2
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
++.|-.|.|+++.|.+ +++++++++.|+.+++||+..... ..++.||+..|+++.++- ...
T Consensus 214 tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~-----------------~~TLsGHtdkVt~ak~~~-~~~ 274 (459)
T KOG0288|consen 214 TLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRL-----------------RHTLSGHTDKVTAAKFKL-SHS 274 (459)
T ss_pred hhhccCCCcceeeecC-CCceEEeecCCCceeeeeccchhh-----------------hhhhcccccceeeehhhc-ccc
Confidence 4556678899999986 578899999999999999976542 234579999999998875 333
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~ 197 (446)
.+++|+.|.+|++||+....+.+++-....++.+.+.. ..+++|..|++|++||++++.+....+.+. .|+++.
T Consensus 275 ~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ 348 (459)
T KOG0288|consen 275 RVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLD 348 (459)
T ss_pred ceeeccccchhhhhhhhhhheeccccccccccceEecc-----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEe
Confidence 59999999999999999888777665555555555542 358899999999999999999998888775 899999
Q ss_pred EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277 (446)
Q Consensus 198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (446)
.++++.. +.+++.|.++.+.|+|+......+.+....
T Consensus 349 ls~~g~~-lLsssRDdtl~viDlRt~eI~~~~sA~g~k------------------------------------------ 385 (459)
T KOG0288|consen 349 LSMDGLE-LLSSSRDDTLKVIDLRTKEIRQTFSAEGFK------------------------------------------ 385 (459)
T ss_pred eccCCeE-EeeecCCCceeeeecccccEEEEeeccccc------------------------------------------
Confidence 9999876 567799999999999986544443221110
Q ss_pred ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC
Q 013274 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 357 (446)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~ 357 (446)
.+|. .+.+.|||++.|+++||.||.|+||++.+++...+ +......
T Consensus 386 ----------------------------~asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~----l~~s~s~ 431 (459)
T KOG0288|consen 386 ----------------------------CASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV----LSLSTSN 431 (459)
T ss_pred ----------------------------cccc--cceeEECCCCceeeeccCCCcEEEEEccCceEEEE----eccCCCC
Confidence 1222 67789999999999999999999999999864321 1222222
Q ss_pred --CeEEEEcCCCcEEEEeCC-CceEEE
Q 013274 358 --PIQLATTQDPAVVFVPCM-TAVKAF 381 (446)
Q Consensus 358 --~~~~~~~~~~~~~~~~~~-~~~~~~ 381 (446)
...+++.+.+..++++.. ..+.+|
T Consensus 432 ~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 432 AAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cceEEEEEcCCCchhhcccCCcceEec
Confidence 345566666665555433 344544
No 94
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=4.7e-24 Score=194.27 Aligned_cols=228 Identities=23% Similarity=0.399 Sum_probs=175.6
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
.+.+|++.-++|+|++...-.|+||+.|++|.+||++...... ..+.......+|...|..+.|++.+.+
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~----------~~~~p~~~~~~h~~~VeDV~~h~~h~~ 241 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED----------KVVDPKTIFSGHEDVVEDVAWHPLHED 241 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC----------ccccceEEeecCCcceehhhccccchh
Confidence 4678999889999998777789999999999999997543210 001112334699999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCC--eeeEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCe
Q 013274 118 LFVTGSYDHYVKVWDTNCT--RVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGI 193 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v 193 (446)
+|+++++|+.+.|||+.+. ++.... .+.+.+++++|.|.. ..+||+|+.|++|.+||+++- .++.++.+|.+.|
T Consensus 242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~--~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev 319 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN--EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV 319 (422)
T ss_pred hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC--CceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence 9999999999999999853 222222 246678999999875 579999999999999999875 5788999999999
Q ss_pred EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG 273 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (446)
..|.|+|+...+|+|++.|+.+.+||+..-+.-++. .- +
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~-----ed------------------a------------------ 358 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP-----ED------------------A------------------ 358 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccCh-----hh------------------h------------------
Confidence 999999999999999999999999998643210000 00 0
Q ss_pred CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEeecCCcEEEEecC
Q 013274 274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVE 339 (446)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs~D~~i~lWd~~ 339 (446)
..+.......-.||.+.|..+.|+|+.. .|+|.+.|+.+.||.+.
T Consensus 359 ---------------------~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 359 ---------------------EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ---------------------ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0000000112358999999999999876 57888999999999876
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.8e-22 Score=175.89 Aligned_cols=242 Identities=18% Similarity=0.247 Sum_probs=182.9
Q ss_pred cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEE-EecCCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (446)
Q Consensus 98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd 176 (446)
.+..|.++++++++ ++.++||||.|-+|+|||+.....+.. +.+.+.+..+.|.+... ...|++|+.||.|.+|+
T Consensus 38 ~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S-~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 38 AFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS-KSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-hhheeeecCCCcEEEEE
Confidence 45689999999988 467999999999999999987655433 33567788777776432 23688999999999999
Q ss_pred CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG 256 (446)
Q Consensus 177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (446)
...-.++..+++|.+.|+.++.+|.++ +.+|.+.|+.+|+||+-.++.-....
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~-------------------------- 166 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLN-------------------------- 166 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeec--------------------------
Confidence 999999999999999999999999998 46799999999999997654211100
Q ss_pred CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274 257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 336 (446)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW 336 (446)
..|. -+.|.|+|.|.+++.++.++ |-+|
T Consensus 167 -------------------------------------------------L~~~--at~v~w~~~Gd~F~v~~~~~-i~i~ 194 (362)
T KOG0294|consen 167 -------------------------------------------------LKNK--ATLVSWSPQGDHFVVSGRNK-IDIY 194 (362)
T ss_pred -------------------------------------------------cCCc--ceeeEEcCCCCEEEEEeccE-EEEE
Confidence 0111 23388999999888777775 9999
Q ss_pred ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEE--cCCCCEEEE
Q 013274 337 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCF--SSQDQELYT 413 (446)
Q Consensus 337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~f--Spd~~~lvt 413 (446)
.+.+.+. +.... ....+..+..-++..++++.. ..+.+||-.+..+...|.+|+++|-++.+ .|++.+|+|
T Consensus 195 q~d~A~v----~~~i~--~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT 268 (362)
T KOG0294|consen 195 QLDNASV----FREIE--NPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT 268 (362)
T ss_pred ecccHhH----hhhhh--ccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence 8876431 11110 111122333345566666655 46899999988999999999999999984 367899999
Q ss_pred eeCCCcEEEeCCCCC
Q 013274 414 GGNDRQILVWCPSRH 428 (446)
Q Consensus 414 gs~D~~v~vW~~~~~ 428 (446)
+|+||.|+||+.+..
T Consensus 269 aSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 269 ASSDGFIKVWDIDME 283 (362)
T ss_pred eccCceEEEEEcccc
Confidence 999999999998754
No 96
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.5e-21 Score=183.04 Aligned_cols=278 Identities=16% Similarity=0.111 Sum_probs=188.0
Q ss_pred CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE-EEEeCCCeEEEEECCC
Q 013274 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTNC 135 (446)
Q Consensus 57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l-~s~s~D~~i~iWd~~~ 135 (446)
++++|++.|++|++||+.++... ... .+|. .+.++.++| +++.+ ++++.|+.|++||+.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~------------~~~-----~~~~-~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVT------------RTF-----PVGQ-RPRGITLSK-DGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceE------------EEE-----ECCC-CCCceEECC-CCCEEEEEECCCCeEEEEECCC
Confidence 57899999999999998765321 011 1222 245667776 56554 6778899999999998
Q ss_pred CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCC-c
Q 013274 136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG-A 214 (446)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg-~ 214 (446)
++.+..+........+.+++.. ..+++++..++.|++||++++..+..+..+ ..+.++.|+|+++. +++++.++ .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~g--~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~-l~~~~~~~~~ 138 (300)
T TIGR03866 63 GEVIGTLPSGPDPELFALHPNG--KILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKI-VVNTSETTNM 138 (300)
T ss_pred CcEEEeccCCCCccEEEECCCC--CEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCE-EEEEecCCCe
Confidence 8877666544444556666543 345566667899999999998877776532 34688999999986 55666554 5
Q ss_pred EEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccccc
Q 013274 215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 294 (446)
Q Consensus 215 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (446)
+.+||.+++.....+.
T Consensus 139 ~~~~d~~~~~~~~~~~---------------------------------------------------------------- 154 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVL---------------------------------------------------------------- 154 (300)
T ss_pred EEEEeCCCCeEEEEEE----------------------------------------------------------------
Confidence 6778876543221110
Q ss_pred CCCcccccccccccccCeEEEEEccCCCEEE-EeecCCcEEEEecCcCceeeeeeeEE--Ee--ecCCCeEEEEcCCCcE
Q 013274 295 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFETV--RL--QTSKPIQLATTQDPAV 369 (446)
Q Consensus 295 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~-sgs~D~~i~lWd~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~ 369 (446)
.......++|+|+|++|+ ++..|+.|++||+.+++.. ..+... .. ....+..+++++++..
T Consensus 155 -------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 220 (300)
T TIGR03866 155 -------------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI-KKITFEIPGVHPEAVQPVGIKLTKDGKT 220 (300)
T ss_pred -------------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee-eeeeecccccccccCCccceEECCCCCE
Confidence 001245688999999875 5556999999999986431 111110 00 0112345778888887
Q ss_pred EEEeC--CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEe-eCCCcEEEeCCCCCC-CCCcCCC
Q 013274 370 VFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG-GNDRQILVWCPSRHI-SDGVDAG 436 (446)
Q Consensus 370 ~~~~~--~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtg-s~D~~v~vW~~~~~~-~~~~~~~ 436 (446)
+++.. .+.+.+||+.+++....+. +...+.+++|+|++++|+++ +.++.|+||++.+.. ..++-.|
T Consensus 221 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 221 AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 66643 3579999998888766553 44578999999999999876 569999999998765 3444444
No 97
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=2.1e-23 Score=198.68 Aligned_cols=237 Identities=19% Similarity=0.334 Sum_probs=180.5
Q ss_pred cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc---eEE-eeeccCCCCceEEEEeeCCCcEE
Q 013274 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK---VYR-TAMSPLAASHMLIAAGTEDVQVR 173 (446)
Q Consensus 98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~lasgs~d~~v~ 173 (446)
...||+..|..+++. ++..++++|+|+++++|+-...+.+......++ +.. +++.+ .+.-++++|+.|..|.
T Consensus 9 ~l~gH~~DVr~v~~~--~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVT--DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVGGMDTTII 84 (745)
T ss_pred EeccCccchheeEec--CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEeecccceEE
Confidence 346999999887765 456899999999999999765555443222222 222 33333 2334688999999999
Q ss_pred EEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274 174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL 253 (446)
Q Consensus 174 vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (446)
+|.+.+..+..+|.||+..|.+++...++ .++|||+|.++++|.+....
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~----------------------------- 133 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV----------------------------- 133 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcC--ceEecccccceEEecchhhh-----------------------------
Confidence 99999999999999999999999976554 37899999999999753210
Q ss_pred ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcE
Q 013274 254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI 333 (446)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i 333 (446)
....+|..+|.++++-|++ .++|||.|++|
T Consensus 134 -------------------------------------------------~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI 163 (745)
T KOG0301|consen 134 -------------------------------------------------YSLQGHTASVWAVASLPEN-TYVTGSADKTI 163 (745)
T ss_pred -------------------------------------------------cccCCcchheeeeeecCCC-cEEeccCccee
Confidence 0135899999999999988 67799999999
Q ss_pred EEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEE
Q 013274 334 RLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT 413 (446)
Q Consensus 334 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvt 413 (446)
|+|.-.+.- .++.-+....-.++.-++...+-++.+..++.|++ +++.+..+.||++.|.+++..++++.++|
T Consensus 164 klWk~~~~l------~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 164 KLWKGGTLL------KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred eeccCCchh------hhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence 999764321 11111222222344555556665556678999999 89999999999999999998899999999
Q ss_pred eeCCCcEEEeCCC
Q 013274 414 GGNDRQILVWCPS 426 (446)
Q Consensus 414 gs~D~~v~vW~~~ 426 (446)
|++|+++|||+.+
T Consensus 237 ~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD 249 (745)
T ss_pred ecCCceEEEeecC
Confidence 9999999999876
No 98
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.1e-23 Score=199.71 Aligned_cols=287 Identities=18% Similarity=0.304 Sum_probs=202.9
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s 123 (446)
+..++|..+++ -..|+.++. ...+||.++.....+ +..+-. ...+.--.....+.|...+.+++||++
T Consensus 40 ~~~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~--------~~~~~~--k~kqn~~~S~~DVkW~~~~~NlIAT~s 107 (839)
T KOG0269|consen 40 AKANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSE--------KCNHRF--KTKQNKFYSAADVKWGQLYSNLIATCS 107 (839)
T ss_pred cccceEeecCC-cceeEEecc-cceeeEeeCcccCCc--------ceeeec--ccccceeeehhhcccccchhhhheeec
Confidence 55678888764 344555533 357777765432111 000000 000111123334567666778999999
Q ss_pred CCCeEEEEECCC---CeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEe
Q 013274 124 YDHYVKVWDTNC---TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199 (446)
Q Consensus 124 ~D~~i~iWd~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s 199 (446)
..|.|.+||+.. .+.+..|. +...++.+.|++..+ .+|++|++|+.|++||++..+-..++.+....|..|.|+
T Consensus 108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence 999999999976 33333332 334477888887655 589999999999999999998888888899999999999
Q ss_pred cCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeec
Q 013274 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS 279 (446)
Q Consensus 200 ~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (446)
|...+.|+++...|.+++||+|.....
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r~----------------------------------------------------- 212 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDRC----------------------------------------------------- 212 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchhH-----------------------------------------------------
Confidence 988888999999999999999863210
Q ss_pred ccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec-CCC
Q 013274 280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SKP 358 (446)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~ 358 (446)
.....+|.|+|.++.|+|++.+|||||.|++|+|||+.+.+.... ...+. .+.
T Consensus 213 ----------------------~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~----~tInTiapv 266 (839)
T KOG0269|consen 213 ----------------------EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK----HTINTIAPV 266 (839)
T ss_pred ----------------------HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce----eEEeeccee
Confidence 012358999999999999999999999999999999987543211 11111 233
Q ss_pred eEEEEcCCCcEEEEe----CCCceEEEEeecCc-eEEEecccccceEEEEEcC-CCCEEEEeeCCCcEEEe
Q 013274 359 IQLATTQDPAVVFVP----CMTAVKAFDIWSGK-TCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILVW 423 (446)
Q Consensus 359 ~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~-~~~~l~gH~~~v~~~~fSp-d~~~lvtgs~D~~v~vW 423 (446)
..+.+.|.....+.. ....|++||+...- +..+|..|+..++.++|-. |-..|-|||-|++|..-
T Consensus 267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred eeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 456666665443322 23589999997654 5689999999999999965 45668899999988654
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=9.4e-22 Score=170.49 Aligned_cols=286 Identities=16% Similarity=0.215 Sum_probs=204.0
Q ss_pred eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (446)
Q Consensus 36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~ 115 (446)
.++..+...+|.+|+|||....+++.||-|++||+|+++..-.+.. .....|.+.|.+++|+. +
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~---------------ka~~~~~~PvL~v~Wsd-d 83 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP---------------KAQQSHDGPVLDVCWSD-D 83 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc---------------hhhhccCCCeEEEEEcc-C
Confidence 3556788899999999996667788999999999999976321111 11246889999999987 7
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s 195 (446)
+..+++|+-|+.+++||+.+++....-.+.+.+..+.+.+-- ....|++||.|.+|+.||.+...++.++. -.+.|.+
T Consensus 84 gskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~-~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa 161 (347)
T KOG0647|consen 84 GSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGM-NYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA 161 (347)
T ss_pred CceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCC-CcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence 889999999999999999999876655566777666665432 24579999999999999999888777664 3355666
Q ss_pred EEEecCCCeEEEEeeCCCcEEEEEccCCce-eEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN 274 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (446)
+..-. . +++.+..+..|.+|+|+++.. ++.++
T Consensus 162 ~Dv~~--p-m~vVata~r~i~vynL~n~~te~k~~~-------------------------------------------- 194 (347)
T KOG0647|consen 162 ADVLY--P-MAVVATAERHIAVYNLENPPTEFKRIE-------------------------------------------- 194 (347)
T ss_pred hhccC--c-eeEEEecCCcEEEEEcCCCcchhhhhc--------------------------------------------
Confidence 55432 2 567788889999999976421 00000
Q ss_pred ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCcee-eeeeeEEEe
Q 013274 275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT-LVNFETVRL 353 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~-~~~~~~~~~ 353 (446)
+ .-.-.++||+...|....+-|+-.|++-+..+..+.+. ...|...+.
T Consensus 195 ----S---------------------------pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 195 ----S---------------------------PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS 243 (347)
T ss_pred ----C---------------------------cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence 0 00112788998888877788999999999988875321 111222221
Q ss_pred ec-C-----CCeEEEEcCCCcEEEE-eCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEE-eeCC
Q 013274 354 QT-S-----KPIQLATTQDPAVVFV-PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT-GGND 417 (446)
Q Consensus 354 ~~-~-----~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvt-gs~D 417 (446)
.. . .+..++|.|--..++. ++++....||-..+..+++...|..+|+|++|+.+|.++|- .|.|
T Consensus 244 ~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 244 TNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 11 0 1224667775444444 45567889998888888999999999999999999999884 3444
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.3e-23 Score=195.22 Aligned_cols=296 Identities=19% Similarity=0.332 Sum_probs=204.3
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+..|+.=|+.+... .+++.|+|+|.|-+|++||...+-.. -......|+.-|.|++....+..+
T Consensus 69 me~HsDWVNDiiL~-~~~~tlIS~SsDtTVK~W~~~~~~~~---------------c~stir~H~DYVkcla~~ak~~~l 132 (735)
T KOG0308|consen 69 MEHHSDWVNDIILC-GNGKTLISASSDTTVKVWNAHKDNTF---------------CMSTIRTHKDYVKCLAYIAKNNEL 132 (735)
T ss_pred hhhhHhHHhhHHhh-cCCCceEEecCCceEEEeecccCcch---------------hHhhhhcccchheeeeecccCcee
Confidence 45688889998886 46778999999999999998654210 012234699999999885567889
Q ss_pred EEEEeCCCeEEEEECCCCe--eeEEEe------cC-C---ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee
Q 013274 119 FVTGSYDHYVKVWDTNCTR--VVMNFK------MP-G---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL 186 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~--~~~~~~------~~-~---~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l 186 (446)
+||||.|+.|++||++++. .+..+. .. | .+|+++..+ ...+|++|+..+.+++||.++++.+..|
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~---t~t~ivsGgtek~lr~wDprt~~kimkL 209 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ---TGTIIVSGGTEKDLRLWDPRTCKKIMKL 209 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC---cceEEEecCcccceEEeccccccceeee
Confidence 9999999999999999773 333222 11 2 366666655 3468999999999999999999999999
Q ss_pred eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274 187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP 266 (446)
Q Consensus 187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (446)
+||++.|..+..+++|.. ++|+|.||+||+||+..+.|+.++
T Consensus 210 rGHTdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLgqQrCl~T~------------------------------------- 251 (735)
T KOG0308|consen 210 RGHTDNVRVLLVNDDGTR-LLSASSDGTIRLWDLGQQRCLATY------------------------------------- 251 (735)
T ss_pred eccccceEEEEEcCCCCe-EeecCCCceEEeeeccccceeeeE-------------------------------------
Confidence 999999999999999986 689999999999999988876554
Q ss_pred cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeee
Q 013274 267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV 346 (446)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~ 346 (446)
..|...|.++..+|+=+++.+|+.|+.|..=|+.+.+....
T Consensus 252 ---------------------------------------~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tl 292 (735)
T KOG0308|consen 252 ---------------------------------------IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTL 292 (735)
T ss_pred ---------------------------------------EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheE
Confidence 24555588999999889999999999999888887321111
Q ss_pred eeeEEEeecCCC-eEEEEcCCC-cEEEEeCCCceEEEEeec-------Cc------------------eEEEecccccce
Q 013274 347 NFETVRLQTSKP-IQLATTQDP-AVVFVPCMTAVKAFDIWS-------GK------------------TCLTFRGHYEYV 399 (446)
Q Consensus 347 ~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~~-------~~------------------~~~~l~gH~~~v 399 (446)
.++ ...+ ..+...... .+.+......++-|.+.- ++ ......|-. .|
T Consensus 293 ick-----~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~-ai 366 (735)
T KOG0308|consen 293 ICK-----EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGA-AI 366 (735)
T ss_pred eec-----CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCch-hh
Confidence 111 1111 111111111 111112223344443210 00 001112211 23
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeCCCCC-CCCCcCCC
Q 013274 400 NCCCFSSQDQELYTGGNDRQILVWCPSRH-ISDGVDAG 436 (446)
Q Consensus 400 ~~~~fSpd~~~lvtgs~D~~v~vW~~~~~-~~~~~~~~ 436 (446)
.-.++-.|-|.++|-..+|++.+||+=.- +++.++.+
T Consensus 367 ~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~gk~ 404 (735)
T KOG0308|consen 367 KKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFGKV 404 (735)
T ss_pred hhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcccc
Confidence 44556678899999999999999998644 35555543
No 101
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=4e-23 Score=189.85 Aligned_cols=281 Identities=22% Similarity=0.345 Sum_probs=189.9
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~ 120 (446)
.|-.-|-++..|. ..+++-||+. |.|+|||+....... ++..+.. .....-+.++..+| |+..|+
T Consensus 417 ~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~---------PvsqLdc---l~rdnyiRSckL~p-dgrtLi 481 (705)
T KOG0639|consen 417 AHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKS---------PVSQLDC---LNRDNYIRSCKLLP-DGRTLI 481 (705)
T ss_pred ccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCC---------ccccccc---cCcccceeeeEecC-CCceEE
Confidence 5777777788874 4677877754 779999986432111 1111111 11223466777776 899999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEecCC---ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274 121 TGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (446)
Q Consensus 121 s~s~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~ 197 (446)
+|++-.++-|||+....+..+.+++. ..+.++++++ ..+..+++.||.|.|||+.+...++.|+||++.+.||.
T Consensus 482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spD---akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 558 (705)
T ss_pred eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc---cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence 99999999999998876654444433 2455666664 46888889999999999999999999999999999999
Q ss_pred EecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccccc---ccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ---LGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN 274 (446)
Q Consensus 198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (446)
++++|.. |.||+-|+++|-||+|.+..+...+- .++ +|.++.- .... ....+
T Consensus 559 is~dGtk-lWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~-------------------dWla--vGMen-- 613 (705)
T KOG0639|consen 559 ISKDGTK-LWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTG-------------------DWLA--VGMEN-- 613 (705)
T ss_pred ecCCCce-eecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCc-------------------ccee--eeccc--
Confidence 9999875 79999999999999998653321110 001 1111100 0000 00000
Q ss_pred ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274 275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 354 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~ 354 (446)
+....+...+... ..+..|.+-|.+|.|.+.|++++|.|.|..+..|...-+...+.
T Consensus 614 ----s~vevlh~skp~k-----------yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq-------- 670 (705)
T KOG0639|consen 614 ----SNVEVLHTSKPEK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-------- 670 (705)
T ss_pred ----CcEEEEecCCccc-----------eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceee--------
Confidence 0000111111110 11346788899999999999999999999999997655432111
Q ss_pred cCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274 355 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
....+.|+||.+|.|++++||||.|...-|+.+
T Consensus 671 --------------------------------------skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 671 --------------------------------------SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred --------------------------------------ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 013467999999999999999999998888753
No 102
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.7e-22 Score=171.12 Aligned_cols=278 Identities=19% Similarity=0.310 Sum_probs=186.4
Q ss_pred eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEe-ec
Q 013274 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWY-PV 114 (446)
Q Consensus 36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~-~~ 114 (446)
+.+..+|..-|+++.|++ .|+.+||+|.|++|+|||.+.... ... . ..+...|.+.|..+.|. |.
T Consensus 6 ~pi~s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~--------~W~--~---Ts~Wrah~~Si~rV~WAhPE 71 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSG--------TWS--C---TSSWRAHDGSIWRVVWAHPE 71 (361)
T ss_pred cccccCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCC--------ceE--E---eeeEEecCCcEEEEEecCcc
Confidence 345678999999999997 588999999999999999754321 000 0 01224799999999995 55
Q ss_pred CCcEEEEEeCCCeEEEEECC-----C--CeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---
Q 013274 115 DTGLFVTGSYDHYVKVWDTN-----C--TRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--- 181 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~-----~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--- 181 (446)
-|+.+|++|+|+++.||.-. . .+-++.-. -.+.+..+.|.|...+ -.+|+++.||.+|||+.-...
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG-LklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG-LKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc-eEEEEeccCcEEEEEecCCccccc
Confidence 69999999999999999752 1 11122212 2345788899887543 467899999999999875432
Q ss_pred ---eeeeee-------CCCCCeEEEEEecCC--CeEEEEeeCC-----CcEEEEEccCCceeEEeecccccccCCCcccc
Q 013274 182 ---ISQTLS-------GHRDGIMTVEWSTSS--EWILVTGGCD-----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK 244 (446)
Q Consensus 182 ---~~~~l~-------~h~~~v~sv~~s~~~--~~~l~S~s~D-----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (446)
+...++ .+..+..||.|+|.. +-.|+.|+.+ +.++||-...+..
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r------------------- 211 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR------------------- 211 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-------------------
Confidence 222222 466677899998753 1245666544 3677775332110
Q ss_pred cceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC-C--
Q 013274 245 RKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-G-- 321 (446)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g-- 321 (446)
.+.....+.+|..+|+.|+|.|+ |
T Consensus 212 -----------------------------------------------------Kw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 212 -----------------------------------------------------KWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred -----------------------------------------------------eeeeehhcCCCCCcceeeeeccccCCc
Confidence 00000113478899999999997 3
Q ss_pred -CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceE
Q 013274 322 -MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVN 400 (446)
Q Consensus 322 -~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~ 400 (446)
..||+++.|| |+||.++..+..+. +... ..++.. .. + .=+.+..|.+|.+.|+
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~--~ee~----------~~~~~~-------~~---l---~v~~vs~~~~H~~~VW 292 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIE--EEEV----------LAPDLM-------TD---L---PVEKVSELDDHNGEVW 292 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhh--hhcc----------cCCCCc-------cc---c---ceEEeeeccCCCCceE
Confidence 3689999999 99999886432211 0000 000000 00 0 1123457889999999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 401 CCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 401 ~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
.|.|.--|..|+|.|.||+||+|...
T Consensus 293 rv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 293 RVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999999999999999999999654
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=4.5e-22 Score=180.12 Aligned_cols=168 Identities=18% Similarity=0.332 Sum_probs=140.9
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
+++||+..|+++.|++ +...++++|.|..|+||....... ......|...|+.+..+| .++
T Consensus 256 ~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~-----------------~~~~~~h~~~V~~ls~h~-tge 316 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSE-----------------PTSSRPHEEPVTGLSLHP-TGE 316 (506)
T ss_pred hccCcceEEEEEEecc-chhheeecCCcceEEeeccccccC-----------------ccccccccccceeeeecc-CCc
Confidence 4689999999999997 567899999999999998754321 112246888999888887 789
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEecCCc---eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGK---VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~ 194 (446)
+|+++|.|++.-+.|+.++..+........ +.+.+|+|+ +.+|++|..|+.|++||+..+.....|.+|.++|.
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD---gLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk 393 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD---GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK 393 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC---ceEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence 999999999999999999998877665322 566777774 56999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEE
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~ 228 (446)
+|+|+.+| |.|++++.|+.|++||+|+.+.++.
T Consensus 394 ~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 394 AISFSENG-YWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred EEEeccCc-eEEEEEecCCeEEEEEehhhcccce
Confidence 99999876 5689999999999999998665443
No 104
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.6e-22 Score=181.70 Aligned_cols=279 Identities=20% Similarity=0.336 Sum_probs=193.2
Q ss_pred CEEEEeeCCCc-EEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC-CCeEEEEECC
Q 013274 57 RYLLSGASDSS-VAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY-DHYVKVWDTN 134 (446)
Q Consensus 57 ~~l~s~s~Dg~-i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~-D~~i~iWd~~ 134 (446)
.++.++|.|.. +.+||+.++... ...+.- ....+|.-. + .++.+++++.. --.+.+|.+.
T Consensus 8 ~~~sssS~d~~~~~~~dl~TGt~~------~~ykg~-----~~a~~~sl~----~---l~~~yllsaq~~rp~l~vw~i~ 69 (476)
T KOG0646|consen 8 TVCSSSSFDPINCIVWDLRTGTSL------LQYKGS-----YLAQAASLT----A---LNNEYLLSAQLKRPLLHVWEIL 69 (476)
T ss_pred EEEeccCCCCcceeEEecCCCcee------EEecCc-----ccccchhhh----h---hchhheeeecccCccccccccC
Confidence 34555566654 999999988631 011100 011122210 1 12345655543 3579999986
Q ss_pred CCeeeE-EEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCC
Q 013274 135 CTRVVM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG 213 (446)
Q Consensus 135 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg 213 (446)
...... .+-++|.+.+++..+. +.+++.|...+.+++|.+.+|.++..+.+|=..|+++.|+.|+.. |+|||.||
T Consensus 70 k~~~~~q~~v~Pg~v~al~s~n~---G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~-iiTgskDg 145 (476)
T KOG0646|consen 70 KKDQVVQYIVLPGPVHALASSNL---GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH-IITGSKDG 145 (476)
T ss_pred chhhhhhhcccccceeeeecCCC---ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE-EEecCCCc
Confidence 544333 4557888888887764 457777778999999999999999999999999999999999985 78999999
Q ss_pred cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccc
Q 013274 214 AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQR 293 (446)
Q Consensus 214 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (446)
.|.+|++..- ..+.+.
T Consensus 146 ~V~vW~l~~l-----v~a~~~----------------------------------------------------------- 161 (476)
T KOG0646|consen 146 AVLVWLLTDL-----VSADND----------------------------------------------------------- 161 (476)
T ss_pred cEEEEEEEee-----cccccC-----------------------------------------------------------
Confidence 9999997531 110000
Q ss_pred cCCCcccccccccccccCeEEEEEccCC--CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEE
Q 013274 294 LHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVF 371 (446)
Q Consensus 294 ~~~~~~~~~~~~~~h~~~v~~l~fs~dg--~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (446)
....+...+..|.-+|+.+...+.| .+|+|.|.|.++|+||+..+.-. . ...+ ......++..|-...++
T Consensus 162 ---~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL-l---ti~f-p~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 162 ---HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL-L---TITF-PSSIKAVALDPAERVVY 233 (476)
T ss_pred ---CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee-E---EEec-CCcceeEEEcccccEEE
Confidence 0001112345788899998887654 58999999999999999987421 1 1111 23455677778788888
Q ss_pred EeCCC-ceEEEEeec----------------CceEEEeccccc--ceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 372 VPCMT-AVKAFDIWS----------------GKTCLTFRGHYE--YVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 372 ~~~~~-~~~~~d~~~----------------~~~~~~l~gH~~--~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
+++.. .+-+.++.. +.....+.||.+ .|+|+++|.||.+|++|+.||+|+||++....
T Consensus 234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 87653 344444322 234568899999 99999999999999999999999999997543
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=6.1e-22 Score=171.66 Aligned_cols=240 Identities=24% Similarity=0.333 Sum_probs=170.6
Q ss_pred CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC-Ceee--EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-TRVV--MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~ 177 (446)
.....|.++.|+|....+++.+|+|++||+|++.. +..+ ....+.+++.+++++.++ ..+++|+.|+.+++|||
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg---skVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG---SKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC---ceEEeeccCCceEEEEc
Confidence 34567888999986666888999999999999976 3332 223467889999998754 47889999999999999
Q ss_pred CCCceeeeeeCCCCCeEEEEEecCCC-eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274 178 ASGAISQTLSGHRDGIMTVEWSTSSE-WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG 256 (446)
Q Consensus 178 ~~~~~~~~l~~h~~~v~sv~~s~~~~-~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (446)
.++. ...+..|.++|.++.|.+... .+|+|||+|++||+||+|....+..++-
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L------------------------- 155 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL------------------------- 155 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-------------------------
Confidence 9994 556778999999999987654 2689999999999999997544332210
Q ss_pred CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274 257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 336 (446)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW 336 (446)
...+.+++. -...++.+..++.|.+|
T Consensus 156 ----------------------------------------------------PeRvYa~Dv--~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 156 ----------------------------------------------------PERVYAADV--LYPMAVVATAERHIAVY 181 (347)
T ss_pred ----------------------------------------------------cceeeehhc--cCceeEEEecCCcEEEE
Confidence 012333322 23467778889999999
Q ss_pred ecCcCceeeeeeeE-EEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecC--ceEEEeccccc---------ceEEEE
Q 013274 337 DVESGRNTLVNFET-VRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSG--KTCLTFRGHYE---------YVNCCC 403 (446)
Q Consensus 337 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~--~~~~~l~gH~~---------~v~~~~ 403 (446)
+++++...+...+. ++.+ .-.++...+....+++. .+.+.+..+..+ +.--+|+.|.. .|++++
T Consensus 182 nL~n~~te~k~~~SpLk~Q---~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQ---TRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EcCCCcchhhhhcCcccce---eeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 99875432211110 1110 11234444444444443 357778888776 44457777762 589999
Q ss_pred EcCCCCEEEEeeCCCcEEEeCCC
Q 013274 404 FSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 404 fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
|+|....|||++.||+...||.+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred eecccceEEEecCCceEEEecch
Confidence 99999999999999999999987
No 106
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=4.6e-22 Score=187.89 Aligned_cols=311 Identities=18% Similarity=0.272 Sum_probs=208.2
Q ss_pred eEEEeecC--CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274 47 NSLQVDLT--EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (446)
Q Consensus 47 ~~l~~s~~--~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~ 124 (446)
++..|++. ....|+-+.+||.|.++|.+..... ..+..+ .....|..+|..+.|.| ...+|++++-
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-------~ee~~l----k~~~aH~nAifDl~wap-ge~~lVsasG 120 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-------LEERQL----KKPLAHKNAIFDLKWAP-GESLLVSASG 120 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc-------hhhhhh----cccccccceeEeeccCC-CceeEEEccC
Confidence 34666533 3568999999999999998643211 000000 12257999999999998 6679999999
Q ss_pred CCeEEEEECCCCeeeEE---EecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--------------------
Q 013274 125 DHYVKVWDTNCTRVVMN---FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-------------------- 181 (446)
Q Consensus 125 D~~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-------------------- 181 (446)
|.++++||+++..+... +.+.+.+-+++|.++.+ .+|++|+.|+.|.|||++...
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~--~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNP--AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCC--cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 99999999998877654 34555677778887654 589999999999999986322
Q ss_pred e-------eeeeeCCCCCeEE---EEEecCCCeEEEEeeC-CCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274 182 I-------SQTLSGHRDGIMT---VEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS 250 (446)
Q Consensus 182 ~-------~~~l~~h~~~v~s---v~~s~~~~~~l~S~s~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (446)
. +..-..|...+.+ +.+..|.. .|||++. |+.|++||+|+..+....+ ..+.
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~e----p~~~------------ 261 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQE----PRGS------------ 261 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccC----CCcc------------
Confidence 0 0111234555555 55556655 4788777 9999999999764321110 0000
Q ss_pred cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC
Q 013274 251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD 330 (446)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D 330 (446)
. .+. ... ...-.+.++....-|.||.+...|
T Consensus 262 ----------------------------------------~-~~~----t~s----krs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 262 ----------------------------------------D-KYP----THS----KRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ----------------------------------------c-Ccc----Ccc----cceeeeEEEEecCCCCeEEEEecC
Confidence 0 000 000 001126777777888888777779
Q ss_pred CcEEEEecCcCceeee-eeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCc-eEEEecccccceEEEEEcCC
Q 013274 331 SRIRLWDVESGRNTLV-NFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK-TCLTFRGHYEYVNCCCFSSQ 407 (446)
Q Consensus 331 ~~i~lWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~-~~~~l~gH~~~v~~~~fSpd 407 (446)
++|.+||+.+.....+ .+.. .+....-+.-..++++..++++.. ....+|.+.+.+ ....|.||+-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg-~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSG-KLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCcCchhhccC-cccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 9999999987433221 1111 111111233456788888888765 478999997765 45788999999999999986
Q ss_pred C-CEEEEeeCCCcEEEeCCCCCCCCCcCCCcc
Q 013274 408 D-QELYTGGNDRQILVWCPSRHISDGVDAGPM 438 (446)
Q Consensus 408 ~-~~lvtgs~D~~v~vW~~~~~~~~~~~~~~~ 438 (446)
. .-++|||+|..++||++..+.-+...+.+.
T Consensus 372 ~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~ 403 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWRLSNGLEEIYAADKD 403 (720)
T ss_pred cCCCceeeccCcceEEEeccCchhhccccccc
Confidence 4 558899999999999998776665555543
No 107
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.4e-22 Score=182.21 Aligned_cols=255 Identities=20% Similarity=0.272 Sum_probs=190.1
Q ss_pred cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee-eEEEecCCc---eEEeeeccCCCCceEEEEeeCCCcEE
Q 013274 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFKMPGK---VYRTAMSPLAASHMLIAAGTEDVQVR 173 (446)
Q Consensus 98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~lasgs~d~~v~ 173 (446)
..+.|+.+|+-+.|++ +|++|||+|.|.+..+|.+..... ....++.++ +..+.++|+ ..++++++.|..+.
T Consensus 219 il~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD---dryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD---DRYLLACGFDEVLS 294 (519)
T ss_pred hHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC---CCeEEecCchHhee
Confidence 4568999999888876 899999999999999999754322 222333344 455566664 45777778888899
Q ss_pred EEeCCCCceeeeee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274 174 LCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS 252 (446)
Q Consensus 174 vwd~~~~~~~~~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (446)
+||+.+|.....++ +|...+.+.+|.||+.. |++|+.|++|..||+.... +.
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~----~~---------------------- 347 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNI----LG---------------------- 347 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcch----hh----------------------
Confidence 99999998876664 56788999999999987 7999999999999986421 00
Q ss_pred cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCc
Q 013274 253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR 332 (446)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~ 332 (446)
.+.+ .....|.+|+.++||+++++-..|..
T Consensus 348 -----------------------------------------~W~g---------vr~~~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 348 -----------------------------------------NWEG---------VRDPKVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred -----------------------------------------cccc---------cccceeEEEEEcCCCcEEEEEecccc
Confidence 0000 01134889999999999999999999
Q ss_pred EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceE--EEEEc-CCC
Q 013274 333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVN--CCCFS-SQD 408 (446)
Q Consensus 333 i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~--~~~fS-pd~ 408 (446)
|++++.++....- +.....+...+..+.++.++.+.. ...+++||+...+++..+.||+..-. .=+|- -|.
T Consensus 378 i~l~~~e~~~dr~-----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 378 IRLYNREARVDRG-----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred eeeechhhhhhhc-----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence 9999988643210 011122445677788888777664 46899999999999999999975422 22233 356
Q ss_pred CEEEEeeCCCcEEEeCCCCCCCCCcCCCcc
Q 013274 409 QELYTGGNDRQILVWCPSRHISDGVDAGPM 438 (446)
Q Consensus 409 ~~lvtgs~D~~v~vW~~~~~~~~~~~~~~~ 438 (446)
.+++|||+|+.|.||+-.++++..+++|--
T Consensus 453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs 482 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGKLLAVLSGHS 482 (519)
T ss_pred ceEEecCCCceEEEEEccCCceeEeecCCc
Confidence 899999999999999999998888888853
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=4.2e-21 Score=176.86 Aligned_cols=300 Identities=18% Similarity=0.276 Sum_probs=206.1
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcc--cCcCCCCCCcc-------ccccceEEecc--------------c
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQ--RATDYEGGGHI-------AKHRSVFVVDK--------------Q 97 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~--~~~~~~~~~~~-------~~~~~~~~~~~--------------~ 97 (446)
.|.+.|++|+.- .+|. |+||+.|..|..||-+ +....+..... .....+++... .
T Consensus 285 aH~ggv~~L~~l-r~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 285 AHDGGVFSLCML-RDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred ecCCceEEEEEe-cCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 899999999995 4564 7789999999999832 11111111111 11111111111 1
Q ss_pred cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (446)
Q Consensus 98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~ 177 (446)
...||..+.+.++.+| +..+++|++.|+.+++|+ ..+++.+.....+..++.|+|.. .+|.|+..|...+.|.
T Consensus 363 ~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg----~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG----VVAVGTATGRWFVLDT 435 (626)
T ss_pred EEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc----eEEEeeccceEEEEec
Confidence 2258988999998888 566999999999999999 55666666666677788888753 6899999999999999
Q ss_pred CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ 257 (446)
Q Consensus 178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (446)
++...+..-.. +.++++|+|+|+|.. ||.|+.|+.|.||.+...+.....
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ysp~G~~-lAvgs~d~~iyiy~Vs~~g~~y~r---------------------------- 485 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYSPDGAF-LAVGSHDNHIYIYRVSANGRKYSR---------------------------- 485 (626)
T ss_pred ccceeEEEEec-CCceEEEEEcCCCCE-EEEecCCCeEEEEEECCCCcEEEE----------------------------
Confidence 99665544444 889999999999985 799999999999987654321110
Q ss_pred CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274 258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 337 (446)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd 337 (446)
. .+-|..+|+.|+||+|++||.+.+.|..|-+|.
T Consensus 486 -----------------------~-----------------------~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 486 -----------------------V-----------------------GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred -----------------------e-----------------------eeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 0 011236799999999999999999999999995
Q ss_pred cCcCcee--eeeeeE------EEee-----cCCCe-EEEEcCCCcEEEEeCC-CceEEEEee---cCceEEEecccccce
Q 013274 338 VESGRNT--LVNFET------VRLQ-----TSKPI-QLATTQDPAVVFVPCM-TAVKAFDIW---SGKTCLTFRGHYEYV 399 (446)
Q Consensus 338 ~~~~~~~--~~~~~~------~~~~-----~~~~~-~~~~~~~~~~~~~~~~-~~~~~~d~~---~~~~~~~l~gH~~~v 399 (446)
...-+.. +..++. +.+. .+..+ .++-+.+..+++++.. ..++++..- -....+.+.+|.+.|
T Consensus 520 ~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~v 599 (626)
T KOG2106|consen 520 PSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHV 599 (626)
T ss_pred cccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeecccccee
Confidence 4332110 000000 0111 01111 1222233444444433 467887652 234567999999999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274 400 NCCCFSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 400 ~~~~fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
++++|+.+.+.|.|.+.|..|..|++
T Consensus 600 t~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 600 TNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEEEEeeCCceEEecCCCceEEEEEe
Confidence 99999999999998889999999975
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2e-21 Score=190.75 Aligned_cols=250 Identities=19% Similarity=0.304 Sum_probs=178.2
Q ss_pred CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccC-cCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRA-TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
..|++.-+.|+|.+ +|.+|.+++.||.|++|+.... +.++. | .-|...|.++.. ++.+
T Consensus 10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~t---i--------------~~~g~~v~~ia~---~s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPET---I--------------DISGELVSSIAC---YSNH 68 (933)
T ss_pred hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCch---h--------------hccCceeEEEee---cccc
Confidence 37999999999997 5679999999999999987655 22210 0 114444555554 4459
Q ss_pred EEEEeCCCeEEEEECCCCe---eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274 119 FVTGSYDHYVKVWDTNCTR---VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s 195 (446)
|++|+.|++|.++....++ .+..|.++ +..+++.. ++..+|.|+.|-.|++-++.+....+.+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~iL~Rftlp--~r~~~v~g---~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTILARFTLP--IRDLAVSG---SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccceeeeeecc--ceEEEEec---CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999987664 45555544 44455554 4568999999999999999999999999999999999
Q ss_pred EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG 275 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (446)
|.|+|.++ +||+.+.||.+++||+.++.+..++.......
T Consensus 144 l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n--------------------------------------- 183 (933)
T KOG1274|consen 144 LSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN--------------------------------------- 183 (933)
T ss_pred eeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccc---------------------------------------
Confidence 99999987 58999999999999998765543332110000
Q ss_pred eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274 276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 355 (446)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~ 355 (446)
. . .....++.++|+|+|..++.-..|+.|++|+..+...... +.
T Consensus 184 -------------~-------~---------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~-Lr------ 227 (933)
T KOG1274|consen 184 -------------E-------F---------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK-LR------ 227 (933)
T ss_pred -------------c-------c---------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee-ec------
Confidence 0 0 0012367789999987787888999999998765321110 00
Q ss_pred CCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 356 SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
+ .-|...+.++.|||+|++||+++.|+.|.||+.++
T Consensus 228 ---------~---------------------------~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 228 ---------D---------------------------KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ---------c---------------------------cccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 0 01222366777777777777777777777777764
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.4e-21 Score=170.10 Aligned_cols=240 Identities=22% Similarity=0.299 Sum_probs=171.5
Q ss_pred CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC
Q 013274 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~ 180 (446)
..+..|.++.|.| .++.|+.+++||++++||+........+.+.+++...+|.+. ..+++|+.||.|+++|++++
T Consensus 11 pP~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~----~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 11 PPEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE----STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred CChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC----ceEEEeccCceEEEEEecCC
Confidence 4566788999985 566777788999999999998877778888888888888763 35889999999999999998
Q ss_pred ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS 260 (446)
Q Consensus 181 ~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (446)
... .+-.|.++|.+|.+++... .++|||||++|++||.|...+...++
T Consensus 86 ~~~-~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d------------------------------ 133 (323)
T KOG1036|consen 86 NED-QIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFD------------------------------ 133 (323)
T ss_pred cce-eeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccc------------------------------
Confidence 653 4567999999999997655 57999999999999998522111100
Q ss_pred cCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274 261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~ 340 (446)
....|.++..+ |..|+.|..|..+.+||+.+
T Consensus 134 -----------------------------------------------~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 134 -----------------------------------------------QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred -----------------------------------------------cCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 01247766554 67888899999999999987
Q ss_pred CceeeeeeeEEEeecCCC-eEEEEcCCCcEEEEe-CCCceEEEEeecC----ceEEEecccc---------cceEEEEEc
Q 013274 341 GRNTLVNFETVRLQTSKP-IQLATTQDPAVVFVP-CMTAVKAFDIWSG----KTCLTFRGHY---------EYVNCCCFS 405 (446)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~d~~~~----~~~~~l~gH~---------~~v~~~~fS 405 (446)
....++..+ ...... -.+++.|...-.+++ -.+.+.+=+..+. +....|..|. -+|++++|+
T Consensus 165 ~~~~~q~re---S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 165 LDEPFQRRE---SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred ccchhhhcc---ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 543221000 000111 124555554444433 3344444333333 3445677774 379999999
Q ss_pred CCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 406 SQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 406 pd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
|=.+.||||+.||.|.+|++..-+
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred cccceEEecCCCceEEEccCcchh
Confidence 999999999999999999997443
No 111
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=9.1e-22 Score=179.49 Aligned_cols=247 Identities=21% Similarity=0.278 Sum_probs=178.1
Q ss_pred CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
+.|...|.+++.++ |++|||||+.|..|.||+.++.... +.+.+|.+.|.+++|.- ....+
T Consensus 199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv-----------------~~~~ghr~~V~~L~fr~-gt~~l 259 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHV-----------------KVFKGHRGAVSSLAFRK-GTSEL 259 (479)
T ss_pred ccccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchh-----------------hcccccccceeeeeeec-Cccce
Confidence 37999999999985 7999999999999999999876532 22468999999998875 66789
Q ss_pred EEEeCCCeEEEEECCCCeeeE-EEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 120 VTGSYDHYVKVWDTNCTRVVM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
+++|.|++|++|+++....+. .|.+++.+..+..... ...+.+|..|.++++|++. ......+.+|.+.+.|++|
T Consensus 260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r---eR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~ 335 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR---ERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAF 335 (479)
T ss_pred eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc---cceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEE
Confidence 999999999999998665443 3344555555444332 2345566699999999993 3344567889999999999
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (446)
-.+.. |+|||.||.|.+|++-+.+.+.+....+...
T Consensus 336 In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~------------------------------------------ 371 (479)
T KOG0299|consen 336 INDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGVI------------------------------------------ 371 (479)
T ss_pred ecccc--eeeccCCceEEEeeecccCceeEeecccccc------------------------------------------
Confidence 86653 6899999999999987765443321111000
Q ss_pred cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274 279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 358 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~ 358 (446)
+. -....+..+|++|+..|...+++||+.+|.||+|-++.+-..+..+..+.+ .+-.
T Consensus 372 -----------------~~-----~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~-~GfV 428 (479)
T KOG0299|consen 372 -----------------PE-----LDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL-VGFV 428 (479)
T ss_pred -----------------CC-----ccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc-ccEE
Confidence 00 001123357999999999999999999999999999886433333333332 2334
Q ss_pred eEEEEcCCCcEEEEeCCC
Q 013274 359 IQLATTQDPAVVFVPCMT 376 (446)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~ 376 (446)
..+++++++..++++.+.
T Consensus 429 Nsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 429 NSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred EEEEEccCCCEEEEeccc
Confidence 567788888877777654
No 112
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.1e-22 Score=190.43 Aligned_cols=243 Identities=21% Similarity=0.327 Sum_probs=175.3
Q ss_pred CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccC-ccccEeEEEEeecCCcE
Q 013274 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG-HKYAISSAIWYPVDTGL 118 (446)
Q Consensus 40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~~~~~~~~~~~ 118 (446)
.-+...|+++.|++ +|.+|+.|-.+|.|.|||+++..... ...+ |...|-++.|. ...
T Consensus 214 ~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~-----------------~~~~~h~~rvg~laW~---~~~ 272 (484)
T KOG0305|consen 214 SFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTR-----------------TLRGSHASRVGSLAWN---SSV 272 (484)
T ss_pred ecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccc-----------------cccCCcCceeEEEecc---Cce
Confidence 33478999999986 68899999999999999987643211 1124 88899999995 568
Q ss_pred EEEEeCCCeEEEEECCCCeeeEE-Ee-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMN-FK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv 196 (446)
+.+|+.|+.|..+|+...+.... +. +...+..+.+++ +..++|+|+.|+.+.|||.....+...+..|.+.|.++
T Consensus 273 lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~---d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~ 349 (484)
T KOG0305|consen 273 LSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP---DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL 349 (484)
T ss_pred EEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC---CCCeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence 99999999999999987665444 22 223355666666 45689999999999999998888899999999999999
Q ss_pred EEecCCCeEEEEee--CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274 197 EWSTSSEWILVTGG--CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN 274 (446)
Q Consensus 197 ~~s~~~~~~l~S~s--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (446)
+|+|..+.+||+|+ .|++|++||..++.++..++...+...- . .....++.....
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL---------~--------------Wsk~~kEi~sth 406 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSL---------I--------------WSKKYKELLSTH 406 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeE---------E--------------EcCCCCEEEEec
Confidence 99999888899865 6999999999988876665432221100 0 000000000000
Q ss_pred cee--ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274 275 GVR--QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 341 (446)
Q Consensus 275 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~ 341 (446)
+.. ...+.+++. ........+|...|..++++|||.++++|+.|.+++||++...
T Consensus 407 G~s~n~i~lw~~ps------------~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 407 GYSENQITLWKYPS------------MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCcEEEEeccc------------cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 000 001111111 1122245799999999999999999999999999999998763
No 113
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=4e-21 Score=183.16 Aligned_cols=322 Identities=18% Similarity=0.205 Sum_probs=204.7
Q ss_pred EeCCCccceeEEEeecCCCC---EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274 38 IVSPHKGSINSLQVDLTEER---YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~---~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~ 114 (446)
.+.+|++.|+|+++-|+ .. +++||+.|+.|++|.++..- +....+.++|...+.|+.-.+
T Consensus 49 ~l~GH~a~VnC~~~l~~-s~~~a~~vsG~sD~~v~lW~l~~~~---------------~~~i~~~~g~~~~~~cv~a~~- 111 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPT-SEIVAEMVSGDSDGRVILWKLRDEY---------------LIKIYTIQGHCKECVCVVARS- 111 (764)
T ss_pred eccCCccceEEEEEccc-ccccceEEEccCCCcEEEEEEeehh---------------eEEEEeecCcceeEEEEEeee-
Confidence 46799999999999754 34 89999999999999987211 111234457887777664432
Q ss_pred CCcEEEEEeCCCeEEEEECCCCee--eEEEec-CCceE--EeeeccCCCCceEEEEeeCCCcEEEEeCCCC--ceeeeee
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRV--VMNFKM-PGKVY--RTAMSPLAASHMLIAAGTEDVQVRLCDIASG--AISQTLS 187 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~~-~~~~~--~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~--~~~~~l~ 187 (446)
......+.|+++.+||....+. ...+.. .+... +++..+ .++..++|.|+.+..|.++.-.+. .....+.
T Consensus 112 --~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~ 188 (764)
T KOG1063|consen 112 --SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NNKTFLLACGGSKFVVDLYSSSADSFARVAELE 188 (764)
T ss_pred --eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cCCcEEEEecCcceEEEEeccCCcceeEEEEee
Confidence 2223337899999999954441 111111 11222 223333 345678889999999999876644 4567889
Q ss_pred CCCCCeEEEEEecCC--CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCC
Q 013274 188 GHRDGIMTVEWSTSS--EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRA 265 (446)
Q Consensus 188 ~h~~~v~sv~~s~~~--~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (446)
||.+-|.+++|...+ ..+|+|+|.|..||||.+.-........... ..+.
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~------------------~~t~---------- 240 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED------------------SLTT---------- 240 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc------------------cccc----------
Confidence 999999999997654 3678999999999999986432111000000 0000
Q ss_pred ccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceee
Q 013274 266 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 345 (446)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~ 345 (446)
. .+...+... ..+. ...+......||...|.++.|+|.+..|+|+|.|.++-+|...+..-.-
T Consensus 241 ~----~~~~~f~~l--------~~i~-----~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiW 303 (764)
T KOG1063|consen 241 L----SNLPVFMIL--------EEIQ-----YRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIW 303 (764)
T ss_pred c----cCCceeeee--------eeEE-----EEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceE
Confidence 0 000000000 0000 0011112345999999999999999999999999999999776532111
Q ss_pred eeeeEEEee-----cCCCeEEEEcCCCcEEEE-eCCCceEEEEeec---CceEEEecccccceEEEEEcCCCCEEEEeeC
Q 013274 346 VNFETVRLQ-----TSKPIQLATTQDPAVVFV-PCMTAVKAFDIWS---GKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 416 (446)
Q Consensus 346 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~---~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~ 416 (446)
+ ...++. ...=....+++++..+.. +-.++.+.|.-.+ ........||.+.|.+++|.|.|.+|.|.|.
T Consensus 304 v--~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~ 381 (764)
T KOG1063|consen 304 V--DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL 381 (764)
T ss_pred E--EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc
Confidence 1 111111 111123445666654444 3446778887222 1345678999999999999999999999999
Q ss_pred CCcEEEeCCC
Q 013274 417 DRQILVWCPS 426 (446)
Q Consensus 417 D~~v~vW~~~ 426 (446)
|+|-||+.+-
T Consensus 382 DQTTRlFa~w 391 (764)
T KOG1063|consen 382 DQTTRLFARW 391 (764)
T ss_pred ccceeeeccc
Confidence 9999999776
No 114
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=9e-24 Score=201.94 Aligned_cols=224 Identities=24% Similarity=0.469 Sum_probs=182.7
Q ss_pred CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC
Q 013274 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC 135 (446)
Q Consensus 56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 135 (446)
..++++...+-..++||.+. ...|...|.++.. -..+..+++|++|..+-+|.+..
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~-----------------------~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~k 59 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE-----------------------FVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGK 59 (825)
T ss_pred ccccceeeeeeccccccchh-----------------------hhhhhhhhceeee-eccceeeccCCCceeeccccccC
Confidence 34555666666677887642 2356666766665 23567899999999999999876
Q ss_pred CeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCc
Q 013274 136 TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA 214 (446)
Q Consensus 136 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~ 214 (446)
...+..+. +.+.+.++.+.+. ..+|++|+.+|+|++||++.++.+++|.+|...+.+|.|+|-+.+ +++|+.|+.
T Consensus 60 p~~i~S~~~hespIeSl~f~~~---E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd 135 (825)
T KOG0267|consen 60 PNAITSLTGHESPIESLTFDTS---ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTD 135 (825)
T ss_pred CchhheeeccCCcceeeecCcc---hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEE-ecccccccc
Confidence 66666644 3456777777764 458999999999999999999999999999999999999999875 699999999
Q ss_pred EEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccccc
Q 013274 215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 294 (446)
Q Consensus 215 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (446)
+++||+|..+|...+
T Consensus 136 ~~iwD~Rk~Gc~~~~----------------------------------------------------------------- 150 (825)
T KOG0267|consen 136 LKIWDIRKKGCSHTY----------------------------------------------------------------- 150 (825)
T ss_pred ceehhhhccCceeee-----------------------------------------------------------------
Confidence 999999977664433
Q ss_pred CCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC
Q 013274 295 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC 374 (446)
Q Consensus 295 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (446)
.+|...|..+.|+|+|+++++|+.|.++++||+..+
T Consensus 151 -----------~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag--------------------------------- 186 (825)
T KOG0267|consen 151 -----------KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG--------------------------------- 186 (825)
T ss_pred -----------cCCcceeEEEeecCCCceeeccCCcceeeeeccccc---------------------------------
Confidence 246667899999999999999999999999997643
Q ss_pred CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 375 MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 375 ~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
+...+|.+|++.+..+.|+|..-+|++||.|++|++|++++.
T Consensus 187 ------------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 187 ------------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred ------------ccccccccccccccccccCchhhhhccCCCCceeeeecccee
Confidence 334677889999999999999999999999999999999944
No 115
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=3.2e-21 Score=183.80 Aligned_cols=380 Identities=18% Similarity=0.290 Sum_probs=219.2
Q ss_pred eCCCccceeEEEeecCCC--CEEEEeeCCCcEEEEEcccCcCCC-----CCCccccccceEEec---------cccccCc
Q 013274 39 VSPHKGSINSLQVDLTEE--RYLLSGASDSSVAVYDVQRATDYE-----GGGHIAKHRSVFVVD---------KQHEHGH 102 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~--~~l~s~s~Dg~i~lWd~~~~~~~~-----~~~~~~~~~~~~~~~---------~~~~~gh 102 (446)
+.||..-|.+|+|....+ -+|+|+|+|..||||++.-+...+ ..-.+....+++... .....||
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 579999999999975543 589999999999999975333111 000011112222111 1234599
Q ss_pred cccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe--eeEEEe---cCC---ceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274 103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR--VVMNFK---MPG---KVYRTAMSPLAASHMLIAAGTEDVQVRL 174 (446)
Q Consensus 103 ~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~---~~~---~~~~~~~~~~~~~~~~lasgs~d~~v~v 174 (446)
..-|.++-|+| .+-.|+|+|.|+++.+|...+.. -+.... +.| ..+...+.+. ...+++.+..|..++
T Consensus 267 eDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n---~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 267 EDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN---SNVIIAHGRTGGFHL 342 (764)
T ss_pred ccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC---CCEEEEecccCcEEE
Confidence 99999999998 56688999999999999865442 222222 121 2344445553 345677778899999
Q ss_pred EeCCCCc---eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC-----------------ceeEEeecc-c
Q 013274 175 CDIASGA---ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-----------------GCFRVLDQS-Q 233 (446)
Q Consensus 175 wd~~~~~---~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~-----------------~~~~~~~~~-~ 233 (446)
|-.+... ....+.||.+.|+.|+|.|.|++ |+|.|.|.+-|++---.. .|+..+... +
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9843332 23356899999999999999996 679999999999853210 011111100 0
Q ss_pred ccccCCCcccccceeecc----c---ccc---C--CCCCcCCCCccc----------cccCCCc-e--eecccceeec--
Q 013274 234 SQLGRRPPLLKRKVSISK----S---LSA---G--QNSSVKPRAPQK----------RSANGNG-V--RQSSVGRIPA-- 286 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~----~---~~~---~--~~~~~~~~~~~~----------~~~~~~~-~--~~~~~~~~~~-- 286 (446)
..-|....+. +.+...+ . +.. . ........-+.. ....+.. . ...+....+.
T Consensus 422 FVSgAdEKVl-RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 422 FVSGADEKVL-RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeecccceee-eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 0001000000 0000000 0 000 0 000000000000 0000000 0 0000000000
Q ss_pred -CCccccccC-CCcccccccccccccCeEEEEEccCCCEEEEeecCC-----cEEEEecCcCceeeeeeeEEEeecCCCe
Q 013274 287 -KGSVRQRLH-PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-----RIRLWDVESGRNTLVNFETVRLQTSKPI 359 (446)
Q Consensus 287 -~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~-----~i~lWd~~~~~~~~~~~~~~~~~~~~~~ 359 (446)
..+....+. ...+....++-||...|.+++.+|+|+++||+.... .|++|+..+=... ..+..+.-...
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~----~~L~~HsLTVT 576 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV----QELEGHSLTVT 576 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh----heecccceEEE
Confidence 000000000 001111224568999999999999999999986543 4799987763211 11222333566
Q ss_pred EEEEcCCCcEEEEeCCC-ceEEEEeecCce----EEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 360 QLATTQDPAVVFVPCMT-AVKAFDIWSGKT----CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 360 ~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~----~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
+++|+||+.++++.+.+ .+.+|....... ......|+..|+++.|+||+.+++|+|.|++|+||..+..
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 89999999998887653 566666533221 2347789999999999999999999999999999976544
No 116
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.2e-20 Score=155.64 Aligned_cols=207 Identities=19% Similarity=0.299 Sum_probs=156.5
Q ss_pred CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee---cCC
Q 013274 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP---VDT 116 (446)
Q Consensus 40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~---~~~ 116 (446)
+.|.|+|+|.+|+| +|.+|+|||.|++|++--.+..+.-.. ++ .-++.-|.+.|..++|.. ..+
T Consensus 86 khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~-----g~-------dle~nmhdgtirdl~fld~~~s~~ 152 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNAT-----GH-------DLEFNMHDGTIRDLAFLDDPESGG 152 (350)
T ss_pred cccCccEEEEEecC-ccCeEEecCCCceEEEEeccccccccc-----Cc-------ceeeeecCCceeeeEEecCCCcCc
Confidence 46899999999997 688999999999999987665443111 11 112346888999998853 234
Q ss_pred cEEEEEeC-CCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC--C---
Q 013274 117 GLFVTGSY-DHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG--H--- 189 (446)
Q Consensus 117 ~~l~s~s~-D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~--h--- 189 (446)
.+|++++. |..|.+=|-.+++....+. +.|++..+- . -++..+++|++|.+|++||++-+.++.++.. |
T Consensus 153 ~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly--s--wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 153 AILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY--S--WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG 228 (350)
T ss_pred eEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE--E--ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC
Confidence 56777654 6777776776777766554 455654332 1 1345799999999999999998887776642 2
Q ss_pred --CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274 190 --RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ 267 (446)
Q Consensus 190 --~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (446)
...|.+|+..|.++ +|+||..|....+||+|.+..++.+
T Consensus 229 lessavaav~vdpsgr-ll~sg~~dssc~lydirg~r~iq~f-------------------------------------- 269 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRMIQRF-------------------------------------- 269 (350)
T ss_pred cccceeEEEEECCCcc-eeeeccCCCceEEEEeeCCceeeee--------------------------------------
Confidence 35689999999997 5899999999999999976543322
Q ss_pred ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274 268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~ 340 (446)
..|...|+++.|||...||+|++.|..||+=|+..
T Consensus 270 --------------------------------------~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 270 --------------------------------------HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred --------------------------------------CCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 35677899999999999999999999999999875
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.9e-23 Score=199.75 Aligned_cols=203 Identities=23% Similarity=0.461 Sum_probs=168.9
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+..|+..|.++..- ..++.+++|+.|..+-||.+...-.. ..+.+|...|-++.+.+ ...+
T Consensus 24 ~~~hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i-----------------~S~~~hespIeSl~f~~-~E~L 84 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAI-----------------TSLTGHESPIESLTFDT-SERL 84 (825)
T ss_pred hhhhhhhhceeeee-ccceeeccCCCceeeccccccCCchh-----------------heeeccCCcceeeecCc-chhh
Confidence 45799999999874 35789999999999999987543210 12469999999998876 5679
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~ 197 (446)
|+.|+.||+|++||++.++.++++.+ ...+.++.|+|+. .++|+|+.|..+++||++...+..++.+|...|..+.
T Consensus 85 laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~---~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG---EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce---EEeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999999888776653 2345677788764 4779999999999999998889999999999999999
Q ss_pred EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277 (446)
Q Consensus 198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (446)
|+|+|+| ++++++|.+++|||++.++...
T Consensus 162 lsP~Gr~-v~~g~ed~tvki~d~~agk~~~-------------------------------------------------- 190 (825)
T KOG0267|consen 162 LSPDGRW-VASGGEDNTVKIWDLTAGKLSK-------------------------------------------------- 190 (825)
T ss_pred ecCCCce-eeccCCcceeeeeccccccccc--------------------------------------------------
Confidence 9999997 6899999999999997654211
Q ss_pred ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~ 340 (446)
.+..|.+.+.++.|+|..-++++||.|++++|||+++
T Consensus 191 --------------------------ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 191 --------------------------EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred --------------------------ccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence 1246788899999999999999999999999999985
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.8e-21 Score=169.67 Aligned_cols=240 Identities=23% Similarity=0.392 Sum_probs=163.3
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC-Cc
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-TG 117 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~-~~ 117 (446)
+..|.++|++|+++ +.++||||.|.+|+|||..+.... .....|.+.|+++.|+++- ..
T Consensus 39 ~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~ql-----------------g~ll~HagsitaL~F~~~~S~s 98 (362)
T KOG0294|consen 39 FSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQL-----------------GILLSHAGSITALKFYPPLSKS 98 (362)
T ss_pred ccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhh-----------------cceeccccceEEEEecCCcchh
Confidence 45899999999995 589999999999999999765321 1224689999999998643 23
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee-CCCCCeEE
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMT 195 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~-~h~~~v~s 195 (446)
.|++|++||.|.+|+...-.++..+. +.+.+..++++|. ..+.++-+.|+.+++||+-.|+....+. .|.. ..
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS---~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a--t~ 173 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS---GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA--TL 173 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC---CceEEEEcCCceeeeehhhcCccceeeccCCcc--ee
Confidence 89999999999999998877777665 4566888888874 4577777889999999999987654443 2333 34
Q ss_pred EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG 275 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (446)
|.|+|.|.++ +-++. ..|-+|-+.+.+.++.+......... +....... +..
T Consensus 174 v~w~~~Gd~F-~v~~~-~~i~i~q~d~A~v~~~i~~~~r~l~~--~~l~~~~L----~vG-------------------- 225 (362)
T KOG0294|consen 174 VSWSPQGDHF-VVSGR-NKIDIYQLDNASVFREIENPKRILCA--TFLDGSEL----LVG-------------------- 225 (362)
T ss_pred eEEcCCCCEE-EEEec-cEEEEEecccHhHhhhhhccccceee--eecCCceE----EEe--------------------
Confidence 9999999874 44443 56999999887766655322111000 00000000 000
Q ss_pred eeecccceeecCCccccccCCCcccccccccccccCeEEEEE--ccCCCEEEEeecCCcEEEEecCcC
Q 013274 276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV--TEDGMYLLSAGSDSRIRLWDVESG 341 (446)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~f--s~dg~~l~sgs~D~~i~lWd~~~~ 341 (446)
.....+. ..............+|...|-.+.+ .|++.||+|+|.||.|++||+...
T Consensus 226 ---~d~~~i~-------~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 226 ---GDNEWIS-------LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ---cCCceEE-------EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 0000000 0000001122345789999999884 477899999999999999999864
No 119
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=8.1e-21 Score=161.56 Aligned_cols=236 Identities=18% Similarity=0.283 Sum_probs=180.1
Q ss_pred eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
....+|.++|-.++|+|.....++++|.|++|++||...+++. ..++. ....+ -+.|+| ++
T Consensus 58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~------------~~i~~-----~~eni-~i~wsp-~g 118 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT------------ARIET-----KGENI-NITWSP-DG 118 (313)
T ss_pred hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE------------EEeec-----cCcce-EEEEcC-CC
Confidence 3467999999999999988899999999999999998765431 11110 11122 346776 78
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv 196 (446)
.+++.++.|..|.+.|..+.+....++..-.++-+++.. .++ ++..-...|.|.|...-.-++++.+..|+....||
T Consensus 119 ~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~--~nd-~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI 195 (313)
T KOG1407|consen 119 EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNN--SND-LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICI 195 (313)
T ss_pred CEEEEecCcccEEEEEecccceeehhcccceeeeeeecC--CCC-EEEEecCCceEEEEeccccccccccccCCcceEEE
Confidence 899999999999999999888877776655555666652 223 44444456899999888888999999999999999
Q ss_pred EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV 276 (446)
Q Consensus 197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (446)
.|+|+|++ ||+|+.|-.+-+||+...-|.+.|.
T Consensus 196 ~f~p~Gry-fA~GsADAlvSLWD~~ELiC~R~is---------------------------------------------- 228 (313)
T KOG1407|consen 196 EFDPDGRY-FATGSADALVSLWDVDELICERCIS---------------------------------------------- 228 (313)
T ss_pred EECCCCce-EeeccccceeeccChhHhhhheeec----------------------------------------------
Confidence 99999997 7999999999999998766655441
Q ss_pred eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274 277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 356 (446)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~ 356 (446)
-+.=+|+.|.||.||++||+||.|..|-|=++++|... -.+ ...+
T Consensus 229 ------------------------------RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~-~eI----~~~~ 273 (313)
T KOG1407|consen 229 ------------------------------RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV-WEI----PCEG 273 (313)
T ss_pred ------------------------------cccCceEEEEeccCcceeeccCccceEEeEecccCCeE-EEe----eccC
Confidence 12346999999999999999999999999998888642 111 1234
Q ss_pred CCeEEEEcCCCcEEEEeCCC
Q 013274 357 KPIQLATTQDPAVVFVPCMT 376 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ 376 (446)
+...++..|...+++-++.+
T Consensus 274 ~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 274 PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred CceeEEecCCCceeeEEecC
Confidence 55567788887777777654
No 120
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=3.3e-21 Score=192.76 Aligned_cols=245 Identities=21% Similarity=0.334 Sum_probs=184.4
Q ss_pred ccEeEEEEeecCCcEEEEEe--CCCeEEEEECCCC------------eeeEE-EecCCceEEeeeccCCCCceEEEEeeC
Q 013274 104 YAISSAIWYPVDTGLFVTGS--YDHYVKVWDTNCT------------RVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTE 168 (446)
Q Consensus 104 ~~V~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~------------~~~~~-~~~~~~~~~~~~~~~~~~~~~lasgs~ 168 (446)
..|.++..+| ++..+|||| .|+.++||+.+.- ..+.+ ..+.+.+.++-|++ ++.+||+|+.
T Consensus 14 ~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~---dG~~lAsGSD 89 (942)
T KOG0973|consen 14 KSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP---DGSYLASGSD 89 (942)
T ss_pred eeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC---CCCeEeeccC
Confidence 3467777776 899999999 9999999986421 11111 12445677777776 4569999999
Q ss_pred CCcEEEEeCCC----------C--------ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEee
Q 013274 169 DVQVRLCDIAS----------G--------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (446)
Q Consensus 169 d~~v~vwd~~~----------~--------~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~ 230 (446)
|..|.||.... | +....+.+|.+.|..|.|+|++.+ |+|+|-|++|.|||.++.++++.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~-lvS~s~DnsViiwn~~tF~~~~v-- 166 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL-LVSVSLDNSVIIWNAKTFELLKV-- 166 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE-EEEecccceEEEEccccceeeee--
Confidence 99999999872 1 145678999999999999999885 89999999999999876433322
Q ss_pred cccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCccccccccccccc
Q 013274 231 QSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG 310 (446)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 310 (446)
..+|.+
T Consensus 167 --------------------------------------------------------------------------l~~H~s 172 (942)
T KOG0973|consen 167 --------------------------------------------------------------------------LRGHQS 172 (942)
T ss_pred --------------------------------------------------------------------------eecccc
Confidence 247888
Q ss_pred CeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec----CCCeEEEEcCCCcEEEEeCC-----CceEEE
Q 013274 311 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT----SKPIQLATTQDPAVVFVPCM-----TAVKAF 381 (446)
Q Consensus 311 ~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 381 (446)
.|..+.|.|-|+||+|-+.|++|+||++..= .+.......+.. ..-.++..+||+..++++.. ..+.++
T Consensus 173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw--~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDW--GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccceEECCccCeeeeecCCceEEEEEcccc--eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 8999999999999999999999999985541 111001111111 11235678899999988643 357788
Q ss_pred EeecCceEEEecccccceEEEEEcCC-----CC------------EEEEeeCCCcEEEeCCCCCCCC
Q 013274 382 DIWSGKTCLTFRGHYEYVNCCCFSSQ-----DQ------------ELYTGGNDRQILVWCPSRHISD 431 (446)
Q Consensus 382 d~~~~~~~~~l~gH~~~v~~~~fSpd-----~~------------~lvtgs~D~~v~vW~~~~~~~~ 431 (446)
+-.+.+.-..|-||.+++.|++|+|- .+ .+|+||.|++|-||.-...++.
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 87778888999999999999999991 22 5779999999999988766554
No 121
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=176.62 Aligned_cols=208 Identities=21% Similarity=0.336 Sum_probs=155.4
Q ss_pred CCEEEEeeCCCcEEEEEcccCcCCCCCCccc---cccceEEe-ccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEE
Q 013274 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIA---KHRSVFVV-DKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVW 131 (446)
Q Consensus 56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iW 131 (446)
|+|+|-|..|..|.|||+.-.....+.-.+. +....... ......+|+.+|.++.+.-.....|||||.|+||++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 6799999999999999985322111110111 00000000 0112358999999988876667899999999999999
Q ss_pred ECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee-eeeeCCCCCeEEEEEecCCCeEEEEe
Q 013274 132 DTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTG 209 (446)
Q Consensus 132 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~-~~l~~h~~~v~sv~~s~~~~~~l~S~ 209 (446)
|++++++...+. +.+.+.++.|.+..+ ..|++|+.|++|.+.|++..... ... .-.+.|-.|+|.|.....++++
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEe
Confidence 999999999888 456789999998765 58999999999999999853221 111 1346789999999988888899
Q ss_pred eCCCcEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCC
Q 013274 210 GCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG 288 (446)
Q Consensus 210 s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (446)
..||+++-+|+|+.+ ++.
T Consensus 349 tddG~v~~~D~R~~~~~vw------------------------------------------------------------- 367 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVW------------------------------------------------------------- 367 (463)
T ss_pred cCCceEEeeecCCCCCcee-------------------------------------------------------------
Confidence 999999999999642 110
Q ss_pred ccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCc
Q 013274 289 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGR 342 (446)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~ 342 (446)
...+|.++|.+|++++.- .+|+|+|.|+.+++|++....
T Consensus 368 ---------------t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 368 ---------------TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred ---------------EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 135799999999998764 578999999999999987543
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9.2e-21 Score=172.97 Aligned_cols=288 Identities=19% Similarity=0.299 Sum_probs=207.8
Q ss_pred ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (446)
Q Consensus 43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~ 122 (446)
.+.|++|+|.| .-.+|++|+.|++++||-+...... ...++ .=-+.+|.++.|+|...+.++++
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~-------~lqS~--------~l~~fPi~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNP-------KLQSI--------HLEKFPIQKAEFAPNGHSVIFTS 276 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccCh-------hheee--------eeccCccceeeecCCCceEEEec
Confidence 47899999997 4679999999999999987532211 11111 12345677888888433499999
Q ss_pred eCCCeEEEEECCCCeeeEEEecCC----ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 123 SYDHYVKVWDTNCTRVVMNFKMPG----KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
|.-.-...||+.+.+....-+..+ ....+.+++++ .+|+..+..|.|.+.-..++..+.+++ -.+.|..+.|
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~---~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~f 352 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS---NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTF 352 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcccchhheeEecCCC---CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEE
Confidence 999999999998877654333222 23455666654 478888899999999999999988876 5678999999
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (446)
+-+++. |+.++.+|.|.+||+++..|++.+.....
T Consensus 353 sSdsk~-l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-------------------------------------------- 387 (514)
T KOG2055|consen 353 SSDSKE-LLASGGTGEVYVWNLRQNSCLHRFVDDGS-------------------------------------------- 387 (514)
T ss_pred ecCCcE-EEEEcCCceEEEEecCCcceEEEEeecCc--------------------------------------------
Confidence 988876 56677789999999999887766521100
Q ss_pred cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceee--eeeeEEEeecC
Q 013274 279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL--VNFETVRLQTS 356 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~--~~~~~~~~~~~ 356 (446)
.| -+.++.|++|.|||+||..|.|.|||..+..... ..+..+..-..
T Consensus 388 ----------------------------v~---gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt 436 (514)
T KOG2055|consen 388 ----------------------------VH---GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT 436 (514)
T ss_pred ----------------------------cc---eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence 01 2567788999999999999999999966532100 00111111122
Q ss_pred CCeEEEEcCCCcEEEEeCC---CceEEEEeecCceEEEeccc---ccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 357 KPIQLATTQDPAVVFVPCM---TAVKAFDIWSGKTCLTFRGH---YEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~l~gH---~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
....+.|.++..+++.++. +++++..+-+......|+.- -+.|+||+|||.+.+||-|-.++.|.+|.++
T Consensus 437 ~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 437 AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 3456788888887766543 57888887766665555533 4678999999999999999999999999875
No 123
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2e-21 Score=189.66 Aligned_cols=162 Identities=22% Similarity=0.293 Sum_probs=132.8
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+.||++.|..|.||. ..+|+|+|.|+|||||++....+.. + -.|..-|+|++|+|.|..+
T Consensus 365 f~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~------------~------F~HndfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 365 FKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLK------------V------FSHNDFVTCVAFNPVDDRY 424 (712)
T ss_pred hhccchhheeccccc--CCeeEeccccccEEeecCCCcceee------------E------EecCCeeEEEEecccCCCc
Confidence 579999999999984 5799999999999999987655421 1 2688999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee--eCC------C
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--SGH------R 190 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l--~~h------~ 190 (446)
|+|||.|++||||++...+++.-..+..-+..+++.|++ ...+.|+.+|.+++|+....++.... .-| .
T Consensus 425 FiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdG---k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDG---KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred EeecccccceEEeecCcCeeEeehhhhhhheeEEeccCC---ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 999999999999999988887766677778888898864 57889999999999999887765432 111 2
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (446)
Q Consensus 191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~ 223 (446)
..|+.+.|.|.....++..+.|..|||+|++..
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence 279999999876643456688999999999754
No 124
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1e-21 Score=170.74 Aligned_cols=209 Identities=23% Similarity=0.421 Sum_probs=159.8
Q ss_pred ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC------------------eeeEEE-ecCCceEEeeeccCCCC
Q 013274 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT------------------RVVMNF-KMPGKVYRTAMSPLAAS 159 (446)
Q Consensus 99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~------------------~~~~~~-~~~~~~~~~~~~~~~~~ 159 (446)
...|+..+.+..|++ ||.++||||.|.+|+|.|++.. -+++++ .+...+..+.|+|.
T Consensus 108 lt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr--- 183 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR--- 183 (430)
T ss_pred EeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch---
Confidence 357999998888876 8999999999999999998621 012222 23345666777764
Q ss_pred ceEEEEeeCCCcEEEEeCCCCceeeeee--CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccccccc
Q 013274 160 HMLIAAGTEDVQVRLCDIASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG 237 (446)
Q Consensus 160 ~~~lasgs~d~~v~vwd~~~~~~~~~l~--~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 237 (446)
..+|++|+.|+.|++||.......+.++ ....+|.+++|.|.|.+ ++.|..-.++|+||+.+..|+-.-.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~Qcfvsan------- 255 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSAN------- 255 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecC-------
Confidence 4589999999999999997654333222 34568999999999986 5678888999999999877653211
Q ss_pred CCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEE
Q 013274 238 RRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV 317 (446)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~f 317 (446)
+..+|.+.|++|.+
T Consensus 256 ------------------------------------------------------------------Pd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 256 ------------------------------------------------------------------PDDQHTGAITQVRY 269 (430)
T ss_pred ------------------------------------------------------------------cccccccceeEEEe
Confidence 11368889999999
Q ss_pred ccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEeccc-c
Q 013274 318 TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGH-Y 396 (446)
Q Consensus 318 s~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH-~ 396 (446)
++.|+..+|||.||-||+||--++++.. +.. ..| .
T Consensus 270 s~t~~lYvTaSkDG~IklwDGVS~rCv~----t~~----------------------------------------~AH~g 305 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWDGVSNRCVR----TIG----------------------------------------NAHGG 305 (430)
T ss_pred cCCccEEEEeccCCcEEeeccccHHHHH----HHH----------------------------------------hhcCC
Confidence 9999999999999999999976654311 000 123 2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 397 EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 397 ~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
..|.+..|+.|++++.|.+.|.+|++|.+.+++
T Consensus 306 sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 306 SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 467889999999999999999999999998775
No 125
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=172.52 Aligned_cols=225 Identities=25% Similarity=0.473 Sum_probs=156.5
Q ss_pred CCCccceeEEEeecC-CCCEEEEeeCCCcEEEEEcccCcCCCCCCcc----ccccceEEeccccccCccccEeEEEEeec
Q 013274 40 SPHKGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHI----AKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (446)
Q Consensus 40 ~~H~~~v~~l~~s~~-~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~gh~~~V~~~~~~~~ 114 (446)
.+|.+.||.++.++- +..++++=|..|.|+|||+...........+ ...++++ ++.+|+..=+++.|+|.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~-----t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLF-----TFNGHKGEGYGLDWSPI 222 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceE-----EecccCccceeeecccc
Confidence 479999999988754 3567777799999999998643211100000 1112222 22456665566666664
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce---eeeeeCCCC
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---SQTLSGHRD 191 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~---~~~l~~h~~ 191 (446)
....|+||.--+.|++|. ..+|.. ..-+.+|+.
T Consensus 223 ~~g~LlsGDc~~~I~lw~--------------------------------------------~~~g~W~vd~~Pf~gH~~ 258 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWE--------------------------------------------PSTGSWKVDQRPFTGHTK 258 (440)
T ss_pred cccccccCccccceEeee--------------------------------------------eccCceeecCcccccccc
Confidence 444555555445555553 333321 124567999
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA 271 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (446)
.|-.+.|||....+|+|||.||+|+|||+|.+..-..
T Consensus 259 SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~------------------------------------------- 295 (440)
T KOG0302|consen 259 SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA------------------------------------------- 295 (440)
T ss_pred chhhhccCCccCceEEeeecCceEEEEEecCCCccce-------------------------------------------
Confidence 9999999999888999999999999999996520000
Q ss_pred CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274 272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 351 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~ 351 (446)
...++|.+.|+-|.|+.+-.+|++|+.||+++|||++.-+
T Consensus 296 -------------------------------~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~--------- 335 (440)
T KOG0302|consen 296 -------------------------------VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK--------- 335 (440)
T ss_pred -------------------------------eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc---------
Confidence 0014678889999999988899999999999999997521
Q ss_pred EeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCC-CCEEEEeeCCCcEEEeCCCCCC
Q 013274 352 RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ-DQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd-~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
.++.+.+|.-|+.+|+|+.|+|. ...|+.+|.|.+|.|||+...+
T Consensus 336 ---------------------------------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 336 ---------------------------------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred ---------------------------------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 12234566779999999999986 5678889999999999987443
No 126
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=2.4e-21 Score=178.90 Aligned_cols=212 Identities=22% Similarity=0.332 Sum_probs=150.7
Q ss_pred cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee----eEEEe-cC-CceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV----VMNFK-MP-GKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (446)
Q Consensus 100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~----~~~~~-~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~ 173 (446)
.+|+..|.++.+-| .|-+|+|||.|-+|++||+..... .+.+. +. ..+.++.+++.+ +..++++| ...++
T Consensus 164 ~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg-~~iLvvsg--~aqak 239 (641)
T KOG0772|consen 164 KHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG-DQILVVSG--SAQAK 239 (641)
T ss_pred cCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC-CeEEEEec--Cccee
Confidence 57888898888776 788999999999999999865322 11111 22 236677777743 23333444 56899
Q ss_pred EEeCCCCceee------------eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCce-eEEeecccccccCCC
Q 013274 174 LCDIASGAISQ------------TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRP 240 (446)
Q Consensus 174 vwd~~~~~~~~------------~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~-~~~~~~~~~~~~~~~ 240 (446)
|+|-+...... .-+||...+++..|+|..+..|+|++.||++||||+.+.+. ++.|....
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~------- 312 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP------- 312 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc-------
Confidence 99975443221 23789999999999999988899999999999999875321 11111000
Q ss_pred cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274 241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED 320 (446)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d 320 (446)
..+..-+++.++|++|
T Consensus 313 ----------------------------------------------------------------~~g~Rv~~tsC~~nrd 328 (641)
T KOG0772|consen 313 ----------------------------------------------------------------AGGKRVPVTSCAWNRD 328 (641)
T ss_pred ----------------------------------------------------------------CCCcccCceeeecCCC
Confidence 0011234788999999
Q ss_pred CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEeccccc--c
Q 013274 321 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE--Y 398 (446)
Q Consensus 321 g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~--~ 398 (446)
|+.+|+|-.||.|.+|+..+.... . .+..-.+|.. .
T Consensus 329 g~~iAagc~DGSIQ~W~~~~~~v~-p-----------------------------------------~~~vk~AH~~g~~ 366 (641)
T KOG0772|consen 329 GKLIAAGCLDGSIQIWDKGSRTVR-P-----------------------------------------VMKVKDAHLPGQD 366 (641)
T ss_pred cchhhhcccCCceeeeecCCcccc-c-----------------------------------------ceEeeeccCCCCc
Confidence 999999999999999997542110 0 0111235766 8
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 399 VNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 399 v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
|+|++||+||++|+|=|.|.++|||++...
T Consensus 367 Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 367 ITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred eeEEEeccccchhhhccCCCceeeeecccc
Confidence 999999999999999999999999999743
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.5e-19 Score=156.08 Aligned_cols=278 Identities=16% Similarity=0.155 Sum_probs=199.4
Q ss_pred eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
++..+....|.+|.|+|. ...|+.+|-||++++||+..... .....|..++.+++|.+ .
T Consensus 7 ~l~npP~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l------------------~~~~~~~~plL~c~F~d--~ 65 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSL------------------KLKFKHGAPLLDCAFAD--E 65 (323)
T ss_pred ccCCCChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhh------------------hhheecCCceeeeeccC--C
Confidence 344577889999999965 45666777999999999875421 11135778899988875 5
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv 196 (446)
..+++|+.||.|+.+|++++.....-.+.+.+.++..... ...+++|+.|+.|++||.+.......+. ..+.|.++
T Consensus 66 ~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~---~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~ 141 (323)
T KOG1036|consen 66 STIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYE---VGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCM 141 (323)
T ss_pred ceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeecc---CCeEEEcccCccEEEEeccccccccccc-cCceEEEE
Confidence 6899999999999999999887666666667777776643 3468999999999999998755444444 34578888
Q ss_pred EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV 276 (446)
Q Consensus 197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (446)
..+. . .|+.|+.|..|.+||+|+.......
T Consensus 142 ~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~q~----------------------------------------------- 171 (323)
T KOG1036|consen 142 DVSG--N-RLVVGTSDRKVLIYDLRNLDEPFQR----------------------------------------------- 171 (323)
T ss_pred eccC--C-EEEEeecCceEEEEEcccccchhhh-----------------------------------------------
Confidence 8753 3 4678888999999999974311000
Q ss_pred eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCc---eeeeeeeEEEe
Q 013274 277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR---NTLVNFETVRL 353 (446)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~---~~~~~~~~~~~ 353 (446)
+...-.-.+++|++.|++.=.+.+|-||+|.+=.+.... .....|.....
T Consensus 172 ---------------------------reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~ 224 (323)
T KOG1036|consen 172 ---------------------------RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL 224 (323)
T ss_pred ---------------------------ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeec
Confidence 000112248999999988777889999998765544321 01112222222
Q ss_pred ec------CCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeC
Q 013274 354 QT------SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 416 (446)
Q Consensus 354 ~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~ 416 (446)
.. -+...++|.|-..+++.++. +-|.+||+.+++.+..|..-...|..++|+.||..||.++.
T Consensus 225 ~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 225 SEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 11 12335778887666776654 57899999999999999999889999999999999998875
No 128
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=2.2e-20 Score=161.44 Aligned_cols=230 Identities=18% Similarity=0.285 Sum_probs=165.9
Q ss_pred CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe------eeEEE------ec-CCc---eEEeeeccCCCCceEEE
Q 013274 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR------VVMNF------KM-PGK---VYRTAMSPLAASHMLIA 164 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~------~~~~~------~~-~~~---~~~~~~~~~~~~~~~la 164 (446)
.|.+.|.++..-+..+++++||+.|+.|.+||++... .+.+- ++ .++ +..+.+.|.+. -.+.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt--GmFt 118 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT--GMFT 118 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC--ceee
Confidence 5888999999888889999999999999999986432 11111 11 223 33445556543 3788
Q ss_pred EeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC--CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcc
Q 013274 165 AGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS--EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPL 242 (446)
Q Consensus 165 sgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~--~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~ 242 (446)
+++-|+.++|||.++-.....|. -++.|.+-+++|-. ..++++|..|-.|++=|+..+.+-.+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~-------------- 183 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT-------------- 183 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--------------
Confidence 99999999999999876655543 34566666666632 34567788888999999987654221
Q ss_pred cccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC
Q 013274 243 LKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM 322 (446)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~ 322 (446)
+.+|.+.|.+|.|+|...
T Consensus 184 --------------------------------------------------------------LsGHr~~vlaV~Wsp~~e 201 (397)
T KOG4283|consen 184 --------------------------------------------------------------LSGHRDGVLAVEWSPSSE 201 (397)
T ss_pred --------------------------------------------------------------eccccCceEEEEeccCce
Confidence 347888999999999887
Q ss_pred E-EEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEE
Q 013274 323 Y-LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNC 401 (446)
Q Consensus 323 ~-l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~ 401 (446)
+ |+|||.||.||+||+....- .|..++.+... ....+++-..|.+.|+.
T Consensus 202 ~vLatgsaDg~irlWDiRrasg---cf~~lD~hn~k---------------------------~~p~~~~n~ah~gkvng 251 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASG---CFRVLDQHNTK---------------------------RPPILKTNTAHYGKVNG 251 (397)
T ss_pred eEEEecCCCceEEEEEeecccc---eeEEeecccCc---------------------------cCccccccccccceeee
Confidence 5 78999999999999975311 12222222110 00112345689999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcCCCccC
Q 013274 402 CCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQ 439 (446)
Q Consensus 402 ~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~~~~~~ 439 (446)
++|+.|+++|++++.|..+++|+.+.+...-...|+.-
T Consensus 252 la~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~ 289 (397)
T KOG4283|consen 252 LAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPII 289 (397)
T ss_pred eeecccchhhhhccCccceEEeecccCccccccccccc
Confidence 99999999999999999999999988876656666543
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.6e-20 Score=170.69 Aligned_cols=165 Identities=23% Similarity=0.335 Sum_probs=140.5
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
..+|+..|-+|.|+..-.+.|||||.|.||++||+.++... ....-|.+.|.++.|+|.....
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~-----------------~s~~~~~k~Vq~l~wh~~~p~~ 301 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK-----------------SSITHHGKKVQTLEWHPYEPSV 301 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc-----------------eehhhcCCceeEEEecCCCceE
Confidence 34799999999998666679999999999999999987642 1123578899999999999999
Q ss_pred EEEEeCCCeEEEEECCCCe-eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeEEE
Q 013274 119 FVTGSYDHYVKVWDTNCTR-VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTV 196 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~sv 196 (446)
|++||+|++|++.|..... .-..++..+.+..+++.+... ..+.+++.||.|+-+|++.. +++++++.|.++|.++
T Consensus 302 LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se--~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl 379 (463)
T KOG0270|consen 302 LLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE--NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGL 379 (463)
T ss_pred EEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc--eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceE
Confidence 9999999999999987432 234456678889999988754 46788899999999999876 8999999999999999
Q ss_pred EEecCCCeEEEEeeCCCcEEEEEccC
Q 013274 197 EWSTSSEWILVTGGCDGAIRFWDIRR 222 (446)
Q Consensus 197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~ 222 (446)
.+++..+.+++|++.|+.|++|++..
T Consensus 380 ~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 380 SVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EecCCCCcceeeccccceEEEEeecC
Confidence 99999888999999999999999753
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.2e-20 Score=160.76 Aligned_cols=209 Identities=18% Similarity=0.352 Sum_probs=149.3
Q ss_pred ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee-----eE-EEecCCceEEeeeccCCCCceEEEEeeCCCcE
Q 013274 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-----VM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQV 172 (446)
Q Consensus 99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v 172 (446)
+.||+++|++++|++ ||+.|||++.|++|++|++.+-.. ++ +.+ -++...+.|+|+.. .++++.-...++
T Consensus 82 LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~--s~vv~~~~g~~l 157 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCK--SVVVSVKRGNKL 157 (420)
T ss_pred hhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcc--eEEEEEccCCEE
Confidence 469999999999887 899999999999999999875321 11 122 24667888888653 244444456689
Q ss_pred EEEeCCC---Cceee--------ee-eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCC
Q 013274 173 RLCDIAS---GAISQ--------TL-SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240 (446)
Q Consensus 173 ~vwd~~~---~~~~~--------~l-~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 240 (446)
++|-+.. |.... .+ +-|+-.+..+.....+++ ++|++.|.+|.||+++ +..+..++..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~-imsas~dt~i~lw~lk-Gq~L~~idtnq~------ 229 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKY-IMSASLDTKICLWDLK-GQLLQSIDTNQS------ 229 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceE-EEEecCCCcEEEEecC-Cceeeeeccccc------
Confidence 9997743 22211 11 346777888887767664 7899999999999998 555544432211
Q ss_pred cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274 241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED 320 (446)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d 320 (446)
.-...+.||+
T Consensus 230 ----------------------------------------------------------------------~n~~aavSP~ 239 (420)
T KOG2096|consen 230 ----------------------------------------------------------------------SNYDAAVSPD 239 (420)
T ss_pred ----------------------------------------------------------------------cccceeeCCC
Confidence 1233468999
Q ss_pred CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceE
Q 013274 321 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVN 400 (446)
Q Consensus 321 g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~ 400 (446)
|++|++++----|++|.+--++ ++..- .-+....|.||...|+
T Consensus 240 GRFia~~gFTpDVkVwE~~f~k-----------------------dG~fq--------------ev~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTK-----------------------DGTFQ--------------EVKRVFSLKGHQSAVL 282 (420)
T ss_pred CcEEEEecCCCCceEEEEEecc-----------------------Ccchh--------------hhhhhheeccchhhee
Confidence 9999999988889999753211 11000 0011246789999999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 401 CCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 401 ~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
.++|||+.+..+|.|.||+.||||.+
T Consensus 283 ~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeeeCCCcceeEEEecCCcEEEeecc
Confidence 99999999999999999999999886
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-18 Score=165.50 Aligned_cols=284 Identities=18% Similarity=0.336 Sum_probs=203.5
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCc-cccEeEEEEeecCCcEEEEE
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH-KYAISSAIWYPVDTGLFVTG 122 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~~~~~~~~~~~l~s~ 122 (446)
..|.+|+|+. ..+.||.+=.||.|.|||+...=.. . ...+|| ...|-+++|. ++.+|.|.
T Consensus 26 s~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~---------~-------~vi~g~~drsIE~L~W~--e~~RLFS~ 86 (691)
T KOG2048|consen 26 SEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFL---------E-------PVIHGPEDRSIESLAWA--EGGRLFSS 86 (691)
T ss_pred cceEEEEEec-cCCceeeeccCCcEEEEccCCCcee---------e-------EEEecCCCCceeeEEEc--cCCeEEee
Confidence 5799999985 4567999999999999998753110 0 111233 3567788887 46799999
Q ss_pred eCCCeEEEEECCCCeeeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee--eeeeCCCCCeEEEEEe
Q 013274 123 SYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS--QTLSGHRDGIMTVEWS 199 (446)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~--~~l~~h~~~v~sv~~s 199 (446)
+.+|+|.-||+.+.+++..+...+ .+.+++..+. ...++.||.||.++.++...++.. ..|..+.+.|.+++|+
T Consensus 87 g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~---~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 87 GLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE---NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred cCCceEEEEecccCceeEEecCCCcceeEEEeCCc---cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence 999999999999999988887654 4677777764 357899999998888888888653 4566678999999999
Q ss_pred cCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeec
Q 013274 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS 279 (446)
Q Consensus 200 ~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (446)
|++.. +++|+.||.|++||..++..+..+.......+
T Consensus 164 ~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~------------------------------------------ 200 (691)
T KOG2048|consen 164 PTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLS------------------------------------------ 200 (691)
T ss_pred CCccE-EEecccCceEEEEEcCCCceEEEeeecccccc------------------------------------------
Confidence 99875 68999999999999987765442211000000
Q ss_pred ccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCe
Q 013274 280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 359 (446)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~ 359 (446)
....--|.+|.|-.|+ .|++|..-|+|++||...+.. .+..........
T Consensus 201 --------------------------k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTL----iqS~~~h~adVl 249 (691)
T KOG2048|consen 201 --------------------------KREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTL----IQSHSCHDADVL 249 (691)
T ss_pred --------------------------cCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcch----hhhhhhhhccee
Confidence 0001227888888777 578999999999999887642 112222233455
Q ss_pred EEEEcCCCcEEEEeCCC-ceEEEEeecCc----eEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274 360 QLATTQDPAVVFVPCMT-AVKAFDIWSGK----TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 360 ~~~~~~~~~~~~~~~~~-~~~~~d~~~~~----~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
.++..++..++++++.+ .+-.+...+.+ .......|...|.+++..++ .|++|+.|.++-+=..
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 67777777888877654 55555554432 23455678888999999877 8999999988776543
No 132
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.1e-19 Score=158.59 Aligned_cols=263 Identities=18% Similarity=0.275 Sum_probs=197.5
Q ss_pred cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (446)
Q Consensus 98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd 176 (446)
.+.||+.+|+.+..-. ....+.|+|.|.+.+||.++++.++.+|. +.|.++++.|++ ...++++++.|++.+||.
T Consensus 143 e~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~---s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN---SGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEecc---ccceEEEccCCcchHHHH
Confidence 3469999999887754 34489999999999999999999998887 457788888887 456899999999999995
Q ss_pred C------C------------------------------CC----ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEE
Q 013274 177 I------A------------------------------SG----AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIR 216 (446)
Q Consensus 177 ~------~------------------------------~~----~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~ 216 (446)
. - .+ .++..|.+|.+.|.+..|-..++. ++++|+|.+..
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRTAn 297 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRTAN 297 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeeccccce
Confidence 1 0 00 134578899999999999888875 79999999999
Q ss_pred EEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCC
Q 013274 217 FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP 296 (446)
Q Consensus 217 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (446)
+||..++..+..
T Consensus 298 lwDVEtge~v~~-------------------------------------------------------------------- 309 (481)
T KOG0300|consen 298 LWDVETGEVVNI-------------------------------------------------------------------- 309 (481)
T ss_pred eeeeccCceecc--------------------------------------------------------------------
Confidence 999987654322
Q ss_pred CcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC
Q 013274 297 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT 376 (446)
Q Consensus 297 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (446)
+.||....+-++-+|..++++|.+.|-+.|+||+...-+. +..+..+......+.|..+..++....+.
T Consensus 310 --------LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s---V~VFQGHtdtVTS~vF~~dd~vVSgSDDr 378 (481)
T KOG0300|consen 310 --------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS---VAVFQGHTDTVTSVVFNTDDRVVSGSDDR 378 (481)
T ss_pred --------ccCcchhccccccCCcceEEEEeccCceeEeccchhhcce---eeeecccccceeEEEEecCCceeecCCCc
Confidence 2467777888888899999999999999999999853222 22222234455566677666665555556
Q ss_pred ceEEEEeec-CceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcC------CCccCccCCCC
Q 013274 377 AVKAFDIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD------AGPMQDQDNWS 445 (446)
Q Consensus 377 ~~~~~d~~~-~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~------~~~~~~~~~~~ 445 (446)
.+++||+.+ ...+.+++.. .+++.++.+..+..++--=.++.||++|+++-++-++. --+|+.--.|.
T Consensus 379 TvKvWdLrNMRsplATIRtd-S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIRTD-SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred eEEEeeeccccCcceeeecC-CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecc
Confidence 899999976 3456666643 56899999988888888888899999999976654443 33455544443
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=3.6e-18 Score=157.65 Aligned_cols=319 Identities=17% Similarity=0.240 Sum_probs=206.6
Q ss_pred CCccceeEEEeecCCCCEEEEe---eCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 41 PHKGSINSLQVDLTEERYLLSG---ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~---s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
.-...|.+++|++.++..+..+ |.+..+.+||-+.+.... . + ..-...|..+.|+|.+..
T Consensus 152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~---~------v--------k~sne~v~~a~FHPtd~n 214 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG---P------V--------KTSNEVVFLATFHPTDPN 214 (626)
T ss_pred cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccC---c------c--------eeccceEEEEEeccCCCc
Confidence 3446799999987654333333 556678999987654321 0 0 112235667889999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEec-----CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCC
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-----PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG 192 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~ 192 (446)
++++++. +.+.+|+.+.+...++... ...+.+++|.+.+. +++|.++|.|.||+..+....++...|.+.
T Consensus 215 liit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----viTgDS~G~i~Iw~~~~~~~~k~~~aH~gg 289 (626)
T KOG2106|consen 215 LIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----VITGDSGGNILIWSKGTNRISKQVHAHDGG 289 (626)
T ss_pred EEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC----EEeecCCceEEEEeCCCceEEeEeeecCCc
Confidence 9999997 5799999988766544322 13467777776543 789999999999999888777777799999
Q ss_pred eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272 (446)
Q Consensus 193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (446)
|.++..-.+|. |+||+.|..|..|| ...+.++.++-.. +.|. .....+.
T Consensus 290 v~~L~~lr~Gt--llSGgKDRki~~Wd-~~y~k~r~~elPe-~~G~---------------------------iRtv~e~ 338 (626)
T KOG2106|consen 290 VFSLCMLRDGT--LLSGGKDRKIILWD-DNYRKLRETELPE-QFGP---------------------------IRTVAEG 338 (626)
T ss_pred eEEEEEecCcc--EeecCccceEEecc-ccccccccccCch-hcCC---------------------------eeEEecC
Confidence 99999988875 57899999999999 3222222111000 0000 0000000
Q ss_pred CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 352 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~ 352 (446)
...+.....-+....|.+. .+ ......+|......++.+|+...++|++.|+.+++|+ . .+. +.-+
T Consensus 339 ~~di~vGTtrN~iL~Gt~~----~~---f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~-----~wt~ 404 (626)
T KOG2106|consen 339 KGDILVGTTRNFILQGTLE----NG---FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKL-----EWTK 404 (626)
T ss_pred CCcEEEeeccceEEEeeec----CC---ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C-Cce-----eEEE
Confidence 0000000000000001100 00 0112357888899999999999999999999999999 2 221 1222
Q ss_pred eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 353 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
....+...+.+.|.+ .++++.. +..-+.|.++.. +.++.....++++|+|||||.+||-||.|+.|-|+.++..
T Consensus 405 ~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~-lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 405 IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD-LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred EecCceeEeeccCcc-eEEEeeccceEEEEecccce-eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 223345567788888 5555543 455677777744 4445555889999999999999999999999999987644
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=2.9e-20 Score=165.75 Aligned_cols=166 Identities=23% Similarity=0.425 Sum_probs=138.2
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+.+|.+.-+.|+|||.....|+||.--+.|++|...++.. .+....+.+|+..|-.+.|+|.....
T Consensus 207 ~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W--------------~vd~~Pf~gH~~SVEDLqWSptE~~v 272 (440)
T KOG0302|consen 207 FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW--------------KVDQRPFTGHTKSVEDLQWSPTEDGV 272 (440)
T ss_pred ecccCccceeeecccccccccccCccccceEeeeeccCce--------------eecCccccccccchhhhccCCccCce
Confidence 4589999999999985444588888888999998877653 33445667899999999999988899
Q ss_pred EEEEeCCCeEEEEECCCC---eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC---CceeeeeeCCCCC
Q 013274 119 FVTGSYDHYVKVWDTNCT---RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS---GAISQTLSGHRDG 192 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~---~~~~~~l~~h~~~ 192 (446)
|+|||-|++|+|||+..+ .++.+-.+.+.++-+++.... .+||+|+.||.++|||++. +.++..++-|..+
T Consensus 273 faScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~---~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE---PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred EEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc---ceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 999999999999999887 344444455667777776543 3899999999999999975 4577889999999
Q ss_pred eEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~ 221 (446)
|++|.|+|....+|++++.|.+|.|||+.
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEee
Confidence 99999999887788999999999999985
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=8.5e-18 Score=157.51 Aligned_cols=268 Identities=14% Similarity=0.155 Sum_probs=177.9
Q ss_pred eCCCccceeEEEeecCCCCEE-EEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 39 VSPHKGSINSLQVDLTEERYL-LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l-~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
+..|. .+.+++|+|+ ++.+ ++++.|+.|++||+.+++... . ...+. .+..+.++| +++
T Consensus 27 ~~~~~-~~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~------------~-----~~~~~-~~~~~~~~~-~g~ 85 (300)
T TIGR03866 27 FPVGQ-RPRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIG------------T-----LPSGP-DPELFALHP-NGK 85 (300)
T ss_pred EECCC-CCCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEE------------e-----ccCCC-CccEEEECC-CCC
Confidence 34443 4678999974 5544 778889999999987653210 0 01111 133456666 555
Q ss_pred EE-EEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC-cEEEEeCCCCceeeeeeCCCCCeEE
Q 013274 118 LF-VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-QVRLCDIASGAISQTLSGHRDGIMT 195 (446)
Q Consensus 118 ~l-~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~-~v~vwd~~~~~~~~~l~~h~~~v~s 195 (446)
.+ ++++.|+.|++||+.+.+.+..+........+++++. ..++++++.++ .+.+||.++++....+.. .....+
T Consensus 86 ~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~d---g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~ 161 (300)
T TIGR03866 86 ILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPD---GKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRF 161 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCC---CCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccE
Confidence 55 5667789999999998887776664444566777764 34666666554 577889988876655432 234578
Q ss_pred EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG 275 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (446)
+.|+|+++++++++..++.|++||++++++.+.+......
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~---------------------------------------- 201 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG---------------------------------------- 201 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc----------------------------------------
Confidence 9999999876667777999999999877654433210000
Q ss_pred eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274 276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLVNFETVRLQ 354 (446)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~ 354 (446)
.. .. ......++|+|+|+++ ++.+.++++.+||+.+++... .+ ..
T Consensus 202 ------------------~~----------~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~-~~----~~ 247 (300)
T TIGR03866 202 ------------------VH----------PE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD-YL----LV 247 (300)
T ss_pred ------------------cc----------cc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE-EE----Ee
Confidence 00 00 0113457899999975 444567789999998764321 11 11
Q ss_pred cCCCeEEEEcCCCcEEEEeC--CCceEEEEeecCceEEEecccccceEEEEEcC
Q 013274 355 TSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 406 (446)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp 406 (446)
...+..++++|++..++++. .+.+.+||+.+++.+..+... ...+.++|+|
T Consensus 248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 23456788999999888753 468999999999999888866 5559999986
No 136
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.6e-19 Score=160.36 Aligned_cols=304 Identities=19% Similarity=0.218 Sum_probs=208.3
Q ss_pred eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
+-+.+|+|.|++|.|+- ++++||||+.|..++||+++..-... .-+++-+. .+.|...|.|+.|.. ..
T Consensus 50 KD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k------~~KPI~~~----~~~H~SNIF~L~F~~-~N 117 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRK------TPKPIGVM----EHPHRSNIFSLEFDL-EN 117 (609)
T ss_pred hhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhc------CCCCceec----cCccccceEEEEEcc-CC
Confidence 33568999999999984 68999999999999999986321110 01222222 246778999998865 56
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---eeeeeeCCC
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHR 190 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~---~~~~l~~h~ 190 (446)
..+++|+.+++|.+-|+++.+.+..+... |.+|.+..+|. ...|++.+.++.|.+||.+... .+..+....
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~---DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT---DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC---CceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 68999999999999999998887766654 36787887775 3478888999999999997653 233344556
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS 270 (446)
Q Consensus 191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (446)
....++.|.|-.+.+|++.+.-+-+-+||+|.... .+ ... ..
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~--~~-------------~~~------~~----------------- 236 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR--PV-------------YQR------SM----------------- 236 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccc--hH-------------Hhh------hc-----------------
Confidence 67789999999888889999999999999986420 00 000 00
Q ss_pred cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274 271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET 350 (446)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~ 350 (446)
..+ +......--++.|+|.|+.+++--...-=.+||+.+.+..+..+..
T Consensus 237 ------------------------~~~-------L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 237 ------------------------FKG-------LPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred ------------------------ccc-------CcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 000 0000011234579999998887766666678888875532211110
Q ss_pred EEeecC-----CCeEEEEcCCCcEEEEeCC-CceEEEEeec-----------------------CceEEEecccccceEE
Q 013274 351 VRLQTS-----KPIQLATTQDPAVVFVPCM-TAVKAFDIWS-----------------------GKTCLTFRGHYEYVNC 401 (446)
Q Consensus 351 ~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~-----------------------~~~~~~l~gH~~~v~~ 401 (446)
.+.+ ....++|..+.. +++++. -.+.+|.+-. .+.+..|+||...++.
T Consensus 286 --N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 286 --NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred --CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 0001 112234444443 444433 4788887631 1234689999999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 402 CCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 402 ~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
|.|+|-..+|++.+-.+.+|||.+.+
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred eeecCCcceEeccchhhheecccccc
Confidence 99999999999999999999998863
No 137
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=2.4e-20 Score=165.50 Aligned_cols=222 Identities=19% Similarity=0.323 Sum_probs=162.8
Q ss_pred eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCc--CCCCCCcc---ccc--c--------ceEEeccccc-
Q 013274 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--DYEGGGHI---AKH--R--------SVFVVDKQHE- 99 (446)
Q Consensus 36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~--~~~~~~~~---~~~--~--------~~~~~~~~~~- 99 (446)
...+.+|.|.|+.|+++- ..++|+|+|++|+.|..+-.. .+.....+ ..+ . .+.+...+..
T Consensus 102 ~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~ 178 (433)
T KOG0268|consen 102 IRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDN 178 (433)
T ss_pred hheeecccCceeeEEecc---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCC
Confidence 345789999999999963 458899999999999843211 00000000 000 0 0111111000
Q ss_pred -----cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274 100 -----HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL 174 (446)
Q Consensus 100 -----~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v 174 (446)
.=-...|.++.+.|....+|++|+.|++|.++|+.+.++++...+....+.++|.| ....+.+|+.|..++.
T Consensus 179 Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP---eafnF~~a~ED~nlY~ 255 (433)
T KOG0268|consen 179 PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP---EAFNFVAANEDHNLYT 255 (433)
T ss_pred ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc---cccceeecccccccee
Confidence 01124567888888888899999999999999999999998888877788889988 3456899999999999
Q ss_pred EeCCCC-ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274 175 CDIASG-AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL 253 (446)
Q Consensus 175 wd~~~~-~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (446)
+|++.- .++....+|...|++|.|||-|+. |+|||-|.+||||..+.+...-.+
T Consensus 256 ~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SRdiY------------------------ 310 (433)
T KOG0268|consen 256 YDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSRDIY------------------------ 310 (433)
T ss_pred hhhhhhcccchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcchhhh------------------------
Confidence 999865 467788999999999999999986 799999999999987653210000
Q ss_pred ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcE
Q 013274 254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI 333 (446)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i 333 (446)
+ ...-..|.||.||.|.+|++|||.|+.|
T Consensus 311 -----------------------------------------h----------tkRMq~V~~Vk~S~Dskyi~SGSdd~nv 339 (433)
T KOG0268|consen 311 -----------------------------------------H----------TKRMQHVFCVKYSMDSKYIISGSDDGNV 339 (433)
T ss_pred -----------------------------------------h----------HhhhheeeEEEEeccccEEEecCCCcce
Confidence 0 0001238999999999999999999999
Q ss_pred EEEecC
Q 013274 334 RLWDVE 339 (446)
Q Consensus 334 ~lWd~~ 339 (446)
|+|-..
T Consensus 340 RlWka~ 345 (433)
T KOG0268|consen 340 RLWKAK 345 (433)
T ss_pred eeeecc
Confidence 999654
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=4.1e-20 Score=170.21 Aligned_cols=241 Identities=19% Similarity=0.259 Sum_probs=174.9
Q ss_pred cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC---eeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT---RVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (446)
Q Consensus 100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~ 173 (446)
..|..-|+++.++. ..+.++||+. +.|+|||+... .++..+.+- ..+.++.+.++ ...|++|+.-.++.
T Consensus 416 L~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd---grtLivGGeastls 490 (705)
T KOG0639|consen 416 LAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD---GRTLIVGGEASTLS 490 (705)
T ss_pred hccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC---CceEEeccccceee
Confidence 35766676666665 5679999986 67999999643 222222221 22344445554 34577888888999
Q ss_pred EEeCCCCce--eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274 174 LCDIASGAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK 251 (446)
Q Consensus 174 vwd~~~~~~--~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (446)
|||+....+ ...+....-...+++.+||.+. ..++..||.|+|||+++...++.
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakv-cFsccsdGnI~vwDLhnq~~Vrq----------------------- 546 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKV-CFSCCSDGNIAVWDLHNQTLVRQ----------------------- 546 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccce-eeeeccCCcEEEEEcccceeeec-----------------------
Confidence 999987653 2344433445678899999885 45788899999999987543332
Q ss_pred ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274 252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS 331 (446)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~ 331 (446)
+.+|..-+.||++++||..|-|||-|.
T Consensus 547 -----------------------------------------------------fqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 547 -----------------------------------------------------FQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred -----------------------------------------------------ccCCCCCceeEEecCCCceeecCCCcc
Confidence 247888899999999999999999999
Q ss_pred cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEecccccceEEEEEcCCCCE
Q 013274 332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE 410 (446)
Q Consensus 332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~ 410 (446)
+||.||++++++.+. . .+ .+....+..+|.+.-++++..+ .+.+... ++.....+.-|.+.|.++.|++-|+|
T Consensus 574 tvRcWDlregrqlqq-h---dF-~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkw 647 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQ-H---DF-SSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKW 647 (705)
T ss_pred ceeehhhhhhhhhhh-h---hh-hhhheecccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCce
Confidence 999999998764321 1 11 1234455667788888877653 4444443 45667788899999999999999999
Q ss_pred EEEeeCCCcEEEeCCCCC
Q 013274 411 LYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 411 lvtgs~D~~v~vW~~~~~ 428 (446)
+||.+.|+.+..|...-+
T Consensus 648 fvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eeecCchhhhhhccCccc
Confidence 999999999999977644
No 139
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=3.8e-19 Score=153.50 Aligned_cols=291 Identities=18% Similarity=0.265 Sum_probs=192.7
Q ss_pred eeEeCCCccceeEEEeecCCCCEEEEeeCC-------CcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeE
Q 013274 36 KEIVSPHKGSINSLQVDLTEERYLLSGASD-------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISS 108 (446)
Q Consensus 36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~D-------g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 108 (446)
.+++..|.|.|+.|+-+|.+.++|+|.-.| -.+.||.+....... .......+..+ ...|-+.|.|
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S---~~~tlE~v~~L----dteavg~i~c 128 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS---NSSTLECVASL----DTEAVGKINC 128 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc---ccchhhHhhcC----CHHHhCceee
Confidence 345667889999999999888999988664 247899875432110 00001111111 1234457889
Q ss_pred EEEeecCCcEEEEEeCCCeEEEEECCCCee-eEEEec------CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc
Q 013274 109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFKM------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA 181 (446)
Q Consensus 109 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~ 181 (446)
+.|.| +++.+++-. |..|.+|+++.... ...... ..+..+-.++|.... ..+++. .|+++..||+++.+
T Consensus 129 vew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg-nqv~tt-~d~tl~~~D~RT~~ 204 (370)
T KOG1007|consen 129 VEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG-NQVATT-SDSTLQFWDLRTMK 204 (370)
T ss_pred EEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc-ceEEEe-CCCcEEEEEccchh
Confidence 99998 788887665 88999999986544 222221 112344456665443 344543 48899999999987
Q ss_pred eeeeee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274 182 ISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS 260 (446)
Q Consensus 182 ~~~~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (446)
....+. .|...|..+.|+|+.+++|+||+.||.|||||+|+.+.
T Consensus 205 ~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~----------------------------------- 249 (370)
T KOG1007|consen 205 KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF----------------------------------- 249 (370)
T ss_pred hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-----------------------------------
Confidence 776665 68899999999999999999999999999999986320
Q ss_pred cCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecC
Q 013274 261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVE 339 (446)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~ 339 (446)
+.+...+|.-.|.+|.|+|.. ++|+|||.|..|.+|...
T Consensus 250 ----------------------------------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 250 ----------------------------------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred ----------------------------------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 001235788899999999965 678999999999999876
Q ss_pred cCcee-eeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCE-EEEeeCC
Q 013274 340 SGRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTGGND 417 (446)
Q Consensus 340 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~-lvtgs~D 417 (446)
+-... ...+... . ..... ....-+. ..-....+.+|.-|++.|.+++||.-..| +||-|.|
T Consensus 290 svSSE~qi~~~~d-e-se~e~--------------~dseer~-kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD 352 (370)
T KOG1007|consen 290 SVSSEQQIEFEDD-E-SESED--------------EDSEERV-KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD 352 (370)
T ss_pred ccccccccccccc-c-ccCcc--------------hhhHHhc-ccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence 53211 1111110 0 00000 0000000 00112235688899999999999987776 6799999
Q ss_pred CcEEEeCCCCCC
Q 013274 418 RQILVWCPSRHI 429 (446)
Q Consensus 418 ~~v~vW~~~~~~ 429 (446)
|-+.|=.+++..
T Consensus 353 GRviIs~V~r~~ 364 (370)
T KOG1007|consen 353 GRVIISSVPRFL 364 (370)
T ss_pred ceEEeecCChhh
Confidence 999887766543
No 140
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.5e-20 Score=177.52 Aligned_cols=162 Identities=18% Similarity=0.383 Sum_probs=130.1
Q ss_pred ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (446)
Q Consensus 45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~ 124 (446)
++..+.|..-+.++|||++..|.|.+||+..... .+. .+.+..|+-.|.++.|++....+|+|||.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r---------nk~-----l~~f~EH~Rs~~~ldfh~tep~iliSGSQ 154 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR---------NKL-----LTVFNEHERSANKLDFHSTEPNILISGSQ 154 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcccc---------chh-----hhHhhhhccceeeeeeccCCccEEEecCC
Confidence 4556777644678999999999999999975210 000 11335788999999999988999999999
Q ss_pred CCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc-eeeeeeCCCCCeEEEEEecCC
Q 013274 125 DHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTVEWSTSS 202 (446)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-~~~~l~~h~~~v~sv~~s~~~ 202 (446)
||+|++||+...+-..++.. ...+..+.|+|.. ...|+++...|.+.+||++... +...+..|.++|.++.|+|+.
T Consensus 155 Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~--~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 155 DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY--GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR 232 (839)
T ss_pred CceEEEEeeecccccccccccchhhhceeeccCC--CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC
Confidence 99999999987665544443 3457788898865 4589999999999999998764 567888999999999999987
Q ss_pred CeEEEEeeCCCcEEEEEccCC
Q 013274 203 EWILVTGGCDGAIRFWDIRRA 223 (446)
Q Consensus 203 ~~~l~S~s~Dg~I~iWd~~~~ 223 (446)
.| ||||+.|+.|+|||+.+.
T Consensus 233 ~~-lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 233 EW-LATGGRDKMVKIWDMTDS 252 (839)
T ss_pred ce-eeecCCCccEEEEeccCC
Confidence 76 799999999999998753
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.2e-18 Score=152.06 Aligned_cols=282 Identities=17% Similarity=0.246 Sum_probs=204.8
Q ss_pred eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD 125 (446)
Q Consensus 46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D 125 (446)
-+|++|++ .|.+||.|-.||.|.|||..+-.. ...+.+|.-+|++++|++ +|..|+|+|.|
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~i-----------------ar~lsaH~~pi~sl~WS~-dgr~LltsS~D 86 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRI-----------------ARMLSAHVRPITSLCWSR-DGRKLLTSSRD 86 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccch-----------------hhhhhccccceeEEEecC-CCCEeeeecCC
Confidence 68999996 688999999999999999876431 123468999999999998 89999999999
Q ss_pred CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee----CCCC-CeEEEEEec
Q 013274 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS----GHRD-GIMTVEWST 200 (446)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~----~h~~-~v~sv~~s~ 200 (446)
..|++||+..|.++..+.++.++....++|...+ .+++.-.+..-.+-++..++. ..|+ +... .-.+..|.+
T Consensus 87 ~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred ceeEEEeccCCCceeEEEccCccceeeeccccCC--eEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccC
Confidence 9999999999999999999999998899886543 333333344455555554321 1111 1111 112346888
Q ss_pred CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274 201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 280 (446)
Q Consensus 201 ~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (446)
.+++ +++|..-|.+.++|..+.+|+..+...
T Consensus 164 ~g~y-IitGtsKGkllv~~a~t~e~vas~rit------------------------------------------------ 194 (405)
T KOG1273|consen 164 RGKY-IITGTSKGKLLVYDAETLECVASFRIT------------------------------------------------ 194 (405)
T ss_pred CCCE-EEEecCcceEEEEecchheeeeeeeec------------------------------------------------
Confidence 8886 589999999999999887765544200
Q ss_pred cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc----CceeeeeeeEE--Ee-
Q 013274 281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES----GRNTLVNFETV--RL- 353 (446)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~----~~~~~~~~~~~--~~- 353 (446)
-...|..+-|+..|.+|+..+.|+.||.|+++. ++...+..+.. +.
T Consensus 195 ---------------------------s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV 247 (405)
T KOG1273|consen 195 ---------------------------SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV 247 (405)
T ss_pred ---------------------------hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH
Confidence 012377888999999999999999999999873 11111110000 00
Q ss_pred ecCCCeEEEEcCCCcEEEEeCC--CceEEEEeecCceEEEecccc-cceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 354 QTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~l~gH~-~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
+.-.....+|+.++.+++.++. -++.+|.-..|.+++.|.|-+ ....++.|.|-...+++- +.|+|.||...
T Consensus 248 Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 248 NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 0012234678888888877654 367888888899999999998 556899999999999988 67899999654
No 142
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.4e-19 Score=151.31 Aligned_cols=169 Identities=20% Similarity=0.285 Sum_probs=128.9
Q ss_pred EeCCCccceeEEEee-cCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC-
Q 013274 38 IVSPHKGSINSLQVD-LTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD- 115 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s-~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~- 115 (446)
.+.||+|+|+.+.|. |.-|.+|||+|-||.|.||+-+.+...+ ......|+..|+++.+.|.+
T Consensus 51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k---------------~~e~~~h~~SVNsV~waphey 115 (299)
T KOG1332|consen 51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK---------------AYEHAAHSASVNSVAWAPHEY 115 (299)
T ss_pred EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh---------------hhhhhhhcccceeeccccccc
Confidence 368999999999985 5568999999999999999977664311 12335799999999998865
Q ss_pred CcEEEEEeCCCeEEEEECCCC-ee-eEE--EecCCceEEeeeccCCCC-----------ceEEEEeeCCCcEEEEeCCCC
Q 013274 116 TGLFVTGSYDHYVKVWDTNCT-RV-VMN--FKMPGKVYRTAMSPLAAS-----------HMLIAAGTEDVQVRLCDIASG 180 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~-----------~~~lasgs~d~~v~vwd~~~~ 180 (446)
+-.|+.++.||+|.|.+.+.. .- ... .-+.-.++++++.|.... -..|++|+.|..|+||+.+.+
T Consensus 116 gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 116 GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 446789999999999987653 11 111 112223567777765322 145999999999999999887
Q ss_pred ce--eeeeeCCCCCeEEEEEecCC---CeEEEEeeCCCcEEEEEcc
Q 013274 181 AI--SQTLSGHRDGIMTVEWSTSS---EWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 181 ~~--~~~l~~h~~~v~sv~~s~~~---~~~l~S~s~Dg~I~iWd~~ 221 (446)
.. -.+|.+|.+-|+.|+|.|.- +..|+|+|.||++.||..+
T Consensus 196 ~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 196 SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 43 34689999999999999975 3468999999999999754
No 143
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=1.9e-19 Score=153.51 Aligned_cols=249 Identities=21% Similarity=0.360 Sum_probs=170.0
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEecccccc-CccccEeEEEEeecCC
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH-GHKYAISSAIWYPVDT 116 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~~~~~~~~~ 116 (446)
++.||.++|+++.|.. . .+|.+|..-|.|++|++++..... +.. -|...|+.+...| +
T Consensus 9 vLRp~~~~v~s~~fqa-~-~rL~sg~~~G~V~~w~lqt~r~~~-----------------~~r~~g~~~it~lq~~p--~ 67 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQA-N-ERLMSGLSVGIVKMWVLQTERDLP-----------------LIRLFGRLFITNLQSIP--N 67 (323)
T ss_pred Eeccccchheehhhcc-c-hhhhcccccceEEEEEeecCccch-----------------hhhhhccceeeceeecC--C
Confidence 4569999999999975 3 459999999999999998764321 111 2444566555554 3
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeE--EEe-----------------------cC--------------------------
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVM--NFK-----------------------MP-------------------------- 145 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~--~~~-----------------------~~-------------------------- 145 (446)
+.+.|-+.|.++.+|++.....+. .+. .+
T Consensus 68 d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~ 147 (323)
T KOG0322|consen 68 DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSER 147 (323)
T ss_pred cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhc
Confidence 688999999999999986522110 000 00
Q ss_pred ---CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce----------eeeeeCCCCCeEEEEEecCCCeEEEEeeCC
Q 013274 146 ---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI----------SQTLSGHRDGIMTVEWSTSSEWILVTGGCD 212 (446)
Q Consensus 146 ---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~----------~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D 212 (446)
|.+.+...........++++|..+|.|.+||+.++.. ......|..+|+++.|.+.... =++|+.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCCcc
Confidence 0111111111112235788999999999999999732 2344679999999999865443 3688888
Q ss_pred CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccc
Q 013274 213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 292 (446)
Q Consensus 213 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (446)
..+..|.+....- .+ +++. .
T Consensus 227 dkl~~~Sl~~s~g--sl-----q~~~--------------------------------------------------e--- 246 (323)
T KOG0322|consen 227 DKLVMYSLNHSTG--SL-----QIRK--------------------------------------------------E--- 246 (323)
T ss_pred ccceeeeeccccC--cc-----cccc--------------------------------------------------e---
Confidence 8899998753200 00 0000 0
Q ss_pred ccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEE
Q 013274 293 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFV 372 (446)
Q Consensus 293 ~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (446)
....|. -|..+.+-||++.+||+|.|++||+|..++.++
T Consensus 247 -----------~~lknp-Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p----------------------------- 285 (323)
T KOG0322|consen 247 -----------ITLKNP-GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP----------------------------- 285 (323)
T ss_pred -----------EEecCC-CccceEEccCCcEEeecccCCcEEEEEeccCCc-----------------------------
Confidence 001111 266778899999999999999999998876532
Q ss_pred eCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274 373 PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 373 ~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
+..|.-|++.|++++||||...+|.+|.|+.|-+|++
T Consensus 286 ----------------LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 ----------------LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ----------------hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 1234458999999999999999999999999999975
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=3.4e-19 Score=164.04 Aligned_cols=190 Identities=19% Similarity=0.268 Sum_probs=151.9
Q ss_pred CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC
Q 013274 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT 136 (446)
Q Consensus 57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~ 136 (446)
.++++|+..++|+|||++.... .....+|+..|+++.+... ..++|+++.-|.|.|..+.++
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~-----------------hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~ 153 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLI-----------------HRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTK 153 (673)
T ss_pred eeeeccCcCceeeehhhHHHHH-----------------hhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccC
Confidence 7999999999999999973221 1223589999999988764 459999999999999999998
Q ss_pred eeeEEEecC-Cce-EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee-eeCCCCCeEEEEEecCCCeEEEEeeCCC
Q 013274 137 RVVMNFKMP-GKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTSSEWILVTGGCDG 213 (446)
Q Consensus 137 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~-l~~h~~~v~sv~~s~~~~~~l~S~s~Dg 213 (446)
+....|.++ +.. .-+.+++.. ..+|.+++.+|.|.+||+....++.. .+.|..+...|+|+|.++.+|+|.+.|.
T Consensus 154 ~~tt~f~~~sgqsvRll~ys~sk--r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk 231 (673)
T KOG4378|consen 154 QKTTTFTIDSGQSVRLLRYSPSK--RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDK 231 (673)
T ss_pred ccccceecCCCCeEEEeeccccc--ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccc
Confidence 888878765 433 344566643 46888999999999999988776654 4679999999999999998999999999
Q ss_pred cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccc
Q 013274 214 AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQR 293 (446)
Q Consensus 214 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (446)
.|.+||++.......+
T Consensus 232 ki~~yD~~s~~s~~~l---------------------------------------------------------------- 247 (673)
T KOG4378|consen 232 KINIYDIRSQASTDRL---------------------------------------------------------------- 247 (673)
T ss_pred eEEEeeccccccccee----------------------------------------------------------------
Confidence 9999998753211110
Q ss_pred cCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce
Q 013274 294 LHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 343 (446)
Q Consensus 294 ~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~ 343 (446)
.-..+.+.|+|+++|.+|+.|...|.|..||++..+.
T Consensus 248 -------------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 248 -------------TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred -------------eecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 1123578899999999999999999999999987543
No 145
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.8e-19 Score=163.70 Aligned_cols=193 Identities=22% Similarity=0.347 Sum_probs=151.3
Q ss_pred cccceeccccceeE--eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCc
Q 013274 25 HRLSTLQLSNYKEI--VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH 102 (446)
Q Consensus 25 ~~l~~~~~~~~~~~--~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 102 (446)
.+|..+.++++..+ +.+|-.+|+||.|+ +|+.+|+|||.||.|.+|.+.+-....... ..++. ..+.+|
T Consensus 103 g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~~---~~~p~-----~~f~~H 173 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADNDH---SVKPL-----HIFSDH 173 (476)
T ss_pred CcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccCC---Cccce-----eeeccC
Confidence 35555666555443 56899999999998 578999999999999999975433221110 11222 344689
Q ss_pred cccEeEEEEeec-CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-
Q 013274 103 KYAISSAIWYPV-DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG- 180 (446)
Q Consensus 103 ~~~V~~~~~~~~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~- 180 (446)
+-+|+.+...+. ...+++|+|.|.++|+||+..+.++.++..+..+.++++.|.. ..+..|+.+|.|.+.++.+-
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae---~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAE---RVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccc---cEEEecCCcceEEeeehhcCC
Confidence 999999877542 3458999999999999999999999999988888888888753 47889999999999887432
Q ss_pred ---------------ceeeeeeCCCC--CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEee
Q 013274 181 ---------------AISQTLSGHRD--GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (446)
Q Consensus 181 ---------------~~~~~l~~h~~--~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~ 230 (446)
..+..+.||.+ +|+|++++-|+. +|+||+.||.+++||+.+..|++++.
T Consensus 251 ~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 251 GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred cccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHh
Confidence 23456789988 999999999987 68999999999999999888877664
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.1e-18 Score=162.21 Aligned_cols=286 Identities=16% Similarity=0.264 Sum_probs=182.4
Q ss_pred eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (446)
Q Consensus 36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~ 115 (446)
..++.+|++.|.+|+..| .|.+|+|||.||+|+||.+.++.+... + .-.+.|.|++|.|..
T Consensus 393 ~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~------------~------~~d~~I~~vaw~P~~ 453 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRT------------V------QFDSEIRSVAWNPLS 453 (733)
T ss_pred eeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEE------------E------eecceeEEEEecCCC
Confidence 456789999999999997 678999999999999999998875321 1 011256677776633
Q ss_pred CcEEEEEeCCCeEEEEECCCCe--------------------------------------eeEEEecCCceEEeeeccCC
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTR--------------------------------------VVMNFKMPGKVYRTAMSPLA 157 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~ 157 (446)
..-++.++....+.|-+..-|. +...+.+...+..+.++..
T Consensus 454 ~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk- 532 (733)
T KOG0650|consen 454 DLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK- 532 (733)
T ss_pred CceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-
Confidence 2222222222234444432110 1112233344555555543
Q ss_pred CCceEEEEeeC---CCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccc
Q 013274 158 ASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234 (446)
Q Consensus 158 ~~~~~lasgs~---d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~ 234 (446)
+.+|++.+. ...|.|.++.......-|+-..+.|.++.|.|...++|++.. ..|||||+..+..++.+
T Consensus 533 --GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvKkL----- 603 (733)
T KOG0650|consen 533 --GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVKKL----- 603 (733)
T ss_pred --CceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--cceEEEehhHHHHHHHH-----
Confidence 457777654 357889999877655556556788999999999887665443 57999998653221100
Q ss_pred cccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEE
Q 013274 235 QLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTG 314 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 314 (446)
. ...-.|..
T Consensus 604 ------------------------------------------------------------~-----------tg~kwiS~ 612 (733)
T KOG0650|consen 604 ------------------------------------------------------------L-----------TGSKWISS 612 (733)
T ss_pred ------------------------------------------------------------h-----------cCCeeeee
Confidence 0 01124888
Q ss_pred EEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEE------eecCc
Q 013274 315 LKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFD------IWSGK 387 (446)
Q Consensus 315 l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d------~~~~~ 387 (446)
|+.+|.|.-|+.|+.|+++..+|+.-... .+..+..+....-.+++.+...++++++. +.+.++. +....
T Consensus 613 msihp~GDnli~gs~d~k~~WfDldlssk---Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp 689 (733)
T KOG0650|consen 613 MSIHPNGDNLILGSYDKKMCWFDLDLSSK---PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP 689 (733)
T ss_pred eeecCCCCeEEEecCCCeeEEEEcccCcc---hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC
Confidence 99999999999999999999999875421 12222222222223334433334444433 3344432 22222
Q ss_pred ---eEEEecccccc----eEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274 388 ---TCLTFRGHYEY----VNCCCFSSQDQELYTGGNDRQILVWC 424 (446)
Q Consensus 388 ---~~~~l~gH~~~----v~~~~fSpd~~~lvtgs~D~~v~vW~ 424 (446)
.++.|+||... |.++.|+|..-||.|++.|++||+|.
T Consensus 690 liVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 690 LIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 35789999877 99999999999999999999999995
No 147
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=5.9e-18 Score=162.11 Aligned_cols=288 Identities=22% Similarity=0.271 Sum_probs=201.8
Q ss_pred eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec----------CC
Q 013274 47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV----------DT 116 (446)
Q Consensus 47 ~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~----------~~ 116 (446)
-++.|++. ...|..-..|.++.|||+.+..... +.. ...-|...|+.+...|- -.
T Consensus 328 IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvg------k~~--------s~lyHS~ciW~Ve~~p~nv~~~~~aclp~ 392 (1080)
T KOG1408|consen 328 IACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVG------KCS--------SMLYHSACIWDVENLPCNVHSPTAACLPR 392 (1080)
T ss_pred eEEEecCC-CceEEEEEcCceEEEEecccccccc------cee--------eeeeccceeeeeccccccccCcccccCCc
Confidence 35678865 4568888999999999998654321 110 11235555555544431 12
Q ss_pred cEEEEEeCCCeEEEEECCCCe---eeE-EE--------ec------------------------C--CceEEeeeccCCC
Q 013274 117 GLFVTGSYDHYVKVWDTNCTR---VVM-NF--------KM------------------------P--GKVYRTAMSPLAA 158 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~---~~~-~~--------~~------------------------~--~~~~~~~~~~~~~ 158 (446)
.-|+|||.|++||+||++.+. ..+ ++ .. . -.+.+++++|
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp--- 469 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP--- 469 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC---
Confidence 358999999999999997532 110 00 00 0 0144556665
Q ss_pred CceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC--CeEEEEeeCCCcEEEEEccCCceeEEeecccccc
Q 013274 159 SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS--EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL 236 (446)
Q Consensus 159 ~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~--~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~ 236 (446)
+..+||+|..-|+++|+|+..-.+...+..|..+|.++.|+... ..+|+|++.|..|.+||.... +.
T Consensus 470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-----y~------ 538 (1080)
T KOG1408|consen 470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-----YD------ 538 (1080)
T ss_pred CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-----cc------
Confidence 44589999999999999999988888999999999999998642 236899999999999997531 00
Q ss_pred cCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEE
Q 013274 237 GRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK 316 (446)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 316 (446)
..+.+-+|...|++|.
T Consensus 539 ----------------------------------------------------------------l~qtld~HSssITsvK 554 (1080)
T KOG1408|consen 539 ----------------------------------------------------------------LVQTLDGHSSSITSVK 554 (1080)
T ss_pred ----------------------------------------------------------------hhhhhcccccceeEEE
Confidence 0011237889999999
Q ss_pred EccCC--CEEEEeecCCcEEEEecCcCceeeeeee--EEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEE
Q 013274 317 VTEDG--MYLLSAGSDSRIRLWDVESGRNTLVNFE--TVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLT 391 (446)
Q Consensus 317 fs~dg--~~l~sgs~D~~i~lWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~ 391 (446)
|...| ..++|+|.|+.|.+--....... ..+. +........+.+...|....++.+|.+ .+++|++.+++..++
T Consensus 555 Fa~~gln~~MiscGADksimFr~~qk~~~g-~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~ 633 (1080)
T KOG1408|consen 555 FACNGLNRKMISCGADKSIMFRVNQKASSG-RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS 633 (1080)
T ss_pred EeecCCceEEEeccCchhhheehhccccCc-eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence 99887 67999999998876533321100 0111 111112234567778887788888775 799999999999998
Q ss_pred ec---ccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 392 FR---GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 392 l~---gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
|. +|.+..--+..-|.|-+|||...|.++.++|--.+
T Consensus 634 FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 634 FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 85 57788888999999999999999999999987543
No 148
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=4.9e-18 Score=160.64 Aligned_cols=167 Identities=20% Similarity=0.325 Sum_probs=112.2
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc-ccEeEEEEeecCC
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDT 116 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~~~~~~~~~ 116 (446)
++.+|..-|..+.|+|-.+.+|+|||.|..|+||.+..+-.. .+ +...+. .||. -.|-++.|+|...
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q----~L-Sape~~-------~g~~~~~vE~l~fHpTaD 141 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQ----KL-SAPEID-------VGGGNVIVECLRFHPTAD 141 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccc----cc-CCccee-------ecCCceEEEEeecccCcC
Confidence 466899999999999888889999999999999998743210 00 111111 2333 3466777888666
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeE
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIM 194 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~ 194 (446)
.++++++ -+++.|||+.+++.+.... +...+.+..++. ++.++++++.|..|+|||-+.. ..++..++|.+.-.
T Consensus 142 gil~s~a-~g~v~i~D~stqk~~~el~~h~d~vQSa~Wse---DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rd 217 (1012)
T KOG1445|consen 142 GILASGA-HGSVYITDISTQKTAVELSGHTDKVQSADWSE---DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRD 217 (1012)
T ss_pred ceEEecc-CceEEEEEcccCceeecccCCchhhhcccccc---CCceEeeecCCcceEEeCCccCCCccccccccccchh
Confidence 6777665 5899999999998876554 233455666665 4569999999999999999765 56777778866421
Q ss_pred -EEEEecCCCeEEEEeeCC----CcEEEEEcc
Q 013274 195 -TVEWSTSSEWILVTGGCD----GAIRFWDIR 221 (446)
Q Consensus 195 -sv~~s~~~~~~l~S~s~D----g~I~iWd~~ 221 (446)
-|.|-.+-.. |+|.+.+ ..|++||.+
T Consensus 218 sRv~w~Gn~~r-lisTGF~~~R~reV~~~Dtr 248 (1012)
T KOG1445|consen 218 SRVLWAGNWER-LISTGFTTKRIREVRAYDTR 248 (1012)
T ss_pred heeeeccchhh-hhhcccchhhheeeeeeecc
Confidence 2444333223 3444433 456666654
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=6e-18 Score=148.59 Aligned_cols=168 Identities=20% Similarity=0.361 Sum_probs=133.0
Q ss_pred cccCccccEeEEEEeec----CCcEEEEEeCCCeEEEEECCCCeeeEEEe------cCCceEEeeeccCCC-CceEEEEe
Q 013274 98 HEHGHKYAISSAIWYPV----DTGLFVTGSYDHYVKVWDTNCTRVVMNFK------MPGKVYRTAMSPLAA-SHMLIAAG 166 (446)
Q Consensus 98 ~~~gh~~~V~~~~~~~~----~~~~l~s~s~D~~i~iWd~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~lasg 166 (446)
..++|+..+..+.|.+. ..+.+||+|.+ .+.++.......++.++ .+...+.++++-+.. ++.++|.|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 34578778888877532 24567777765 68888765433222222 123356666665544 46788888
Q ss_pred eCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccc
Q 013274 167 TEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK 246 (446)
Q Consensus 167 s~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (446)
+.-|.|+|.|+.++++...+.+|...|..+.|.|....+++|+|.|.+||+|++++..|+..+-.
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--------------- 176 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--------------- 176 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc---------------
Confidence 89999999999999999999999999999999999888899999999999999999888765521
Q ss_pred eeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEE
Q 013274 247 VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS 326 (446)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s 326 (446)
..+|.+.|.+++|+++|.+++|
T Consensus 177 ----------------------------------------------------------~egHrdeVLSvD~~~~gd~i~S 198 (385)
T KOG1034|consen 177 ----------------------------------------------------------VEGHRDEVLSVDFSLDGDRIAS 198 (385)
T ss_pred ----------------------------------------------------------cccccCcEEEEEEcCCCCeeec
Confidence 2478889999999999999999
Q ss_pred eecCCcEEEEecC
Q 013274 327 AGSDSRIRLWDVE 339 (446)
Q Consensus 327 gs~D~~i~lWd~~ 339 (446)
+|.|.+|++|++.
T Consensus 199 cGmDhslk~W~l~ 211 (385)
T KOG1034|consen 199 CGMDHSLKLWRLN 211 (385)
T ss_pred cCCcceEEEEecC
Confidence 9999999999998
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=2.3e-17 Score=148.81 Aligned_cols=170 Identities=19% Similarity=0.323 Sum_probs=128.6
Q ss_pred CCc-cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 41 PHK-GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 41 ~H~-~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
-|. .+|+++.|.......|+||+.|..|+||-++++...... + .+. ....+.+|..+|+++.|+| ++.+|
T Consensus 10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---~---~V~--y~s~Ls~H~~aVN~vRf~p-~gelL 80 (434)
T KOG1009|consen 10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---M---KVE--YLSSLSRHTRAVNVVRFSP-DGELL 80 (434)
T ss_pred ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---e---eEE--EeecccCCcceeEEEEEcC-CcCee
Confidence 344 689999998765558999999999999998876532211 1 111 1123468999999988887 89999
Q ss_pred EEEeCCCeEEEEECC--------C------CeeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce
Q 013274 120 VTGSYDHYVKVWDTN--------C------TRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~--------~------~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~ 182 (446)
|||++++.|.+|-.. + ...+....+. ..++.+++++ ++..+++|+-|..+++||+..|..
T Consensus 81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~---d~~~l~s~s~dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP---DSNFLVSGSVDNSVRLWDVHAGQL 157 (434)
T ss_pred eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC---CCceeeeeeccceEEEEEecccee
Confidence 999999999999765 1 0111111222 3356666666 456899999999999999999999
Q ss_pred eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (446)
Q Consensus 183 ~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~ 223 (446)
...+.+|...|..++|.|-+++ +++=+.|...+..++...
T Consensus 158 ~~~~~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 158 LAILDDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLK 197 (434)
T ss_pred Eeeccccccccceeecchhhhh-hhhhccCcccceeeeeee
Confidence 9999999999999999999987 578888887777776543
No 151
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.80 E-value=2.2e-16 Score=154.00 Aligned_cols=372 Identities=15% Similarity=0.223 Sum_probs=207.6
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-CCc
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTG 117 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-~~~ 117 (446)
..+|.+.|.-+..- |.+|+++-.++.+.||+........ +..+-+.. ..++. |+++ ++|. --.
T Consensus 110 ~~~~~a~v~~l~~f---Ge~lia~d~~~~l~vw~~s~~~~e~-------~l~~~~~~----~~~~~-Ital-~HP~TYLN 173 (910)
T KOG1539|consen 110 TLLHGAKVHLLLPF---GEHLIAVDISNILFVWKTSSIQEEL-------YLQSTFLK----VEGDF-ITAL-LHPSTYLN 173 (910)
T ss_pred eccccceEEEEeee---cceEEEEEccCcEEEEEeccccccc-------cccceeee----ccCCc-eeeE-ecchhhee
Confidence 34676667666541 4578889999999999987641110 00000110 12232 5553 4442 224
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv 196 (446)
.++.|+.+|.+++|++.+++.+.+++... .+.++.-+| --..+|.|..+|.|.++|++.++.+.+++...+.|+++
T Consensus 174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsP---aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vtsl 250 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSP---ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSL 250 (910)
T ss_pred eEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCC---cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEE
Confidence 57889999999999999999999887533 344433333 34589999999999999999999999998667999999
Q ss_pred EEecCCCeEEEEeeCCCcEEEEEccCCceeEEee-ccccccc------CCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD-QSQSQLG------RRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR 269 (446)
Q Consensus 197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (446)
+|..||+.+|++|+..|.+-+||+...+....+. .+...+. .+|-......+.+-...........++...-+
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R 330 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR 330 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence 9999999999999999999999998765544332 1211111 01101100000000000000000000000000
Q ss_pred ---ccCCCceeec-ccceeecCCccccccC------------CCcccccc---cc------cccccCeEEEEEccC----
Q 013274 270 ---SANGNGVRQS-SVGRIPAKGSVRQRLH------------PGMLSSQD---RA------TAHYGAVTGLKVTED---- 320 (446)
Q Consensus 270 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~---~~------~~h~~~v~~l~fs~d---- 320 (446)
.+-..++++. ..+........+..+. .+...... +. .-...+|..++|...
T Consensus 331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~ 410 (910)
T KOG1539|consen 331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE 410 (910)
T ss_pred cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence 0000000000 0000000000000000 00000000 00 000123444444321
Q ss_pred -CCEEEEeecCCcEEEEecCcCceeeeeeeEEEee--cCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEe---c
Q 013274 321 -GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ--TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF---R 393 (446)
Q Consensus 321 -g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l---~ 393 (446)
.+.++.--.+..++.|++.+.+.-...+....+. ......++.++++...+.+.. +.+.++++.+|-....| +
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 1233333445556666655432211111111111 112344666777777777644 57899999999988888 6
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 394 GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 394 gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
.|.++|+.++.-.-++.++|++.||.++.|+..+..
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 999999999997778899999999999999998665
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=1.7e-18 Score=164.08 Aligned_cols=295 Identities=18% Similarity=0.271 Sum_probs=180.1
Q ss_pred CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
..|...|..+.|.| +...||+++.|.+|++||++..... + .....||.+.|.+++|.+.+...|
T Consensus 97 ~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~-------G--------~~~~~GH~~SvkS~cf~~~n~~vF 160 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLV-------G--------GRLNLGHTGSVKSECFMPTNPAVF 160 (720)
T ss_pred ccccceeEeeccCC-CceeEEEccCCceeeeeeeccceee-------c--------ceeecccccccchhhhccCCCcce
Confidence 36999999999987 6778999999999999999876431 1 112359999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCee--------------------e-------EEEecC-CceEE-eeeccCCCCceEEEEeeC-C
Q 013274 120 VTGSYDHYVKVWDTNCTRV--------------------V-------MNFKMP-GKVYR-TAMSPLAASHMLIAAGTE-D 169 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~~~--------------------~-------~~~~~~-~~~~~-~~~~~~~~~~~~lasgs~-d 169 (446)
++|+.|+.|.|||+..... . ...... +.+.+ +.... ..+...||+++. |
T Consensus 161 ~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~-fkDe~tlaSaga~D 239 (720)
T KOG0321|consen 161 CTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL-FKDESTLASAGAAD 239 (720)
T ss_pred eeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE-EeccceeeeccCCC
Confidence 9999999999999742110 0 000000 11111 11111 123346777766 9
Q ss_pred CcEEEEeCCCCceee--------eeeCC---CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccC
Q 013274 170 VQVRLCDIASGAISQ--------TLSGH---RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR 238 (446)
Q Consensus 170 ~~v~vwd~~~~~~~~--------~l~~h---~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 238 (446)
+.|+|||++...... .+..| .-.+.++...-.|.+++|+|. |+.|.+||++....- ..+
T Consensus 240 ~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~s--------P~~- 309 (720)
T KOG0321|consen 240 STIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSIS--------PVA- 309 (720)
T ss_pred cceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcC--------chh-
Confidence 999999998764322 22233 224566666666788777777 999999999753210 000
Q ss_pred CCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEc
Q 013274 239 RPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT 318 (446)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs 318 (446)
.+ .+ ... ..-...-..+
T Consensus 310 -------------~~---------------------------------sg----~~~-------------~sf~vks~lS 326 (720)
T KOG0321|consen 310 -------------EF---------------------------------SG----KLN-------------SSFYVKSELS 326 (720)
T ss_pred -------------hc---------------------------------cC----ccc-------------ceeeeeeecC
Confidence 00 00 000 0001112368
Q ss_pred cCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCc-----------
Q 013274 319 EDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK----------- 387 (446)
Q Consensus 319 ~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------- 387 (446)
||+.+|+||+.|....+|.+.+.......+..... ....++.+-++...++....+..+++|++..+-
T Consensus 327 pd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~-eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~ 405 (720)
T KOG0321|consen 327 PDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTR-EVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSI 405 (720)
T ss_pred CCCceEeccCCCcceeeeeecCccCChhhhhCcce-EEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchh
Confidence 99999999999999999999875432221111111 111122333333444444445689999986531
Q ss_pred ---eEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 388 ---TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 388 ---~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
-...|.+|.-.+..+.++.-+.+.... -+..++|.-..
T Consensus 406 v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP~ 446 (720)
T KOG0321|consen 406 VYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSPV 446 (720)
T ss_pred hhhhhhhhhccccccccccccccccccchh--hhccccccCcc
Confidence 123456777777777666544333332 56678885543
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4e-17 Score=155.88 Aligned_cols=247 Identities=15% Similarity=0.197 Sum_probs=183.6
Q ss_pred ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeee-EEEe--cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC
Q 013274 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV-MNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180 (446)
Q Consensus 104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~ 180 (446)
.+|.+++++. ....||.+=.|+.|.+|++...=.. ..+. ..+.+..++|++ ...|.+.+.+|.|.-||+.++
T Consensus 26 s~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e----~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 26 SEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE----GGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred cceEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc----CCeEEeecCCceEEEEecccC
Confidence 5688888876 5567999999999999999764322 2222 345577888873 235778888999999999999
Q ss_pred ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS 260 (446)
Q Consensus 181 ~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (446)
+....+..-.+.|++++.+|.+. .++-|+.||.+.+.+...++.....
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r------------------------------- 148 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKR------------------------------- 148 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEe-------------------------------
Confidence 99999988899999999999886 5677889996666655432210000
Q ss_pred cCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274 261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~ 340 (446)
.+.-..+.|.+|+|+|++..|++|+.||.|++||+.+
T Consensus 149 -------------------------------------------~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 149 -------------------------------------------SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred -------------------------------------------ecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 0001136699999999999999999999999999998
Q ss_pred Cceee-eeeeEEEeecCCC---eEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeC
Q 013274 341 GRNTL-VNFETVRLQTSKP---IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 416 (446)
Q Consensus 341 ~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~ 416 (446)
+.... ......+.....+ -.+.+-.++.++...+.+.|..||-..+.+...+..|.+.|.|++-++++.+|++++.
T Consensus 186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred CceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccC
Confidence 76422 1111112222111 1234445555555556689999999999999999999999999999999999999999
Q ss_pred CCcEEEeCCCCCCC
Q 013274 417 DRQILVWCPSRHIS 430 (446)
Q Consensus 417 D~~v~vW~~~~~~~ 430 (446)
|+.|.-+...+...
T Consensus 266 d~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 266 DPKIIQYSLTTNKS 279 (691)
T ss_pred CCceEEEEecCCcc
Confidence 99999987766544
No 154
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.2e-18 Score=148.54 Aligned_cols=277 Identities=19% Similarity=0.275 Sum_probs=179.8
Q ss_pred CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-CCcEEEEEeCCCeEEEEECCC
Q 013274 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTGLFVTGSYDHYVKVWDTNC 135 (446)
Q Consensus 57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-~~~~l~s~s~D~~i~iWd~~~ 135 (446)
..+|++-+.|+|++||..++..++ .+.+|+..+..+.|.+. ....+.||+.||+||+||+..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~-----------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs 103 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE-----------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRS 103 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh-----------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeec
Confidence 468888899999999988765332 23466666666777653 456789999999999999987
Q ss_pred CeeeEEEecCCceEEeeeccCCC--CceEEEEee----CCCcEEEEeCCCCce-eee-eeCCCCCeEEEEEecCCCeEEE
Q 013274 136 TRVVMNFKMPGKVYRTAMSPLAA--SHMLIAAGT----EDVQVRLCDIASGAI-SQT-LSGHRDGIMTVEWSTSSEWILV 207 (446)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~lasgs----~d~~v~vwd~~~~~~-~~~-l~~h~~~v~sv~~s~~~~~~l~ 207 (446)
......+...... ...+.+++. ...++++|+ .+-.|.+||++.... +.. ...|.+.|++|.|.|.++.+|+
T Consensus 104 ~~e~a~~~~~~~~-~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 104 QAESARISWTQQS-GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred chhhhheeccCCC-CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE
Confidence 6544333322211 112222222 345777775 367899999987654 444 4689999999999999999999
Q ss_pred EeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecC
Q 013274 208 TGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 287 (446)
Q Consensus 208 S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (446)
|||.||-|.++|+..... ..
T Consensus 183 SGSvDGLvnlfD~~~d~E-------eD----------------------------------------------------- 202 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKDNE-------ED----------------------------------------------------- 202 (376)
T ss_pred eecccceEEeeecCCCcc-------hh-----------------------------------------------------
Confidence 999999999999864210 00
Q ss_pred CccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeeeEEEee-------c--CC
Q 013274 288 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ-------T--SK 357 (446)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~-------~--~~ 357 (446)
.+. ...-|...|.++.|..++ +.|..-+-.++..+|+++.+....- ++..... . ..
T Consensus 203 -aL~------------~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~-~~~~~~~~~d~r~~~~~dY 268 (376)
T KOG1188|consen 203 -ALL------------HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW-LENPDVSADDLRKEDNCDY 268 (376)
T ss_pred -hHH------------HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc-ccCccchhhhHHhhhhhhh
Confidence 000 011244568899999888 4466778899999999987653211 1100000 0 00
Q ss_pred CeEEEEcCCCcEEEEeC--CCceEEEEee---cC---ceEEEecc-cccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274 358 PIQLATTQDPAVVFVPC--MTAVKAFDIW---SG---KTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 358 ~~~~~~~~~~~~~~~~~--~~~~~~~d~~---~~---~~~~~l~g-H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
.+.....-+..+.+.+. .+...++-+. ++ +....|.| |..-|.++.|-..+.+|.||++||.+.+|..
T Consensus 269 ~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 269 VINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 11111112233333332 2444444332 22 34456776 7778899999888999999999999999984
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.3e-18 Score=175.10 Aligned_cols=255 Identities=16% Similarity=0.250 Sum_probs=185.1
Q ss_pred cceeEEEeecCCCC---EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274 44 GSINSLQVDLTEER---YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (446)
Q Consensus 44 ~~v~~l~~s~~~~~---~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~ 120 (446)
..-+.|+|.+.+.. +||.|..||.|.+||...-..-....+ ..+...|++.|..+.|.+..+.+||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~-----------la~~~~h~G~V~gLDfN~~q~nlLA 133 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV-----------LATKSKHTGPVLGLDFNPFQGNLLA 133 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH-----------HhhhcccCCceeeeeccccCCceee
Confidence 34578888764433 599999999999999764211000001 1233579999999999998888999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC--CeEE
Q 013274 121 TGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD--GIMT 195 (446)
Q Consensus 121 s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~--~v~s 195 (446)
||+.||.|.|||++..+.-.++. ..+.+.++++..- ...+||+++.++.+-|||++..+.+-.+..|.. .+..
T Consensus 134 SGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk--vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 134 SGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK--VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred ccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh--hhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence 99999999999998644332221 2344555555432 235799999999999999999987777766555 4678
Q ss_pred EEEecCCCeEEEEeeCC---CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274 196 VEWSTSSEWILVTGGCD---GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (446)
++|+|++...+++++.| -.|.+||+|....
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~ass----------------------------------------------- 244 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASS----------------------------------------------- 244 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCC-----------------------------------------------
Confidence 99999987666777765 3699999985310
Q ss_pred CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETV 351 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~ 351 (446)
+.....+|...|.+|.|++.. .+|+|++.|++|.+|+.+++..
T Consensus 245 ----------------------------P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv-------- 288 (1049)
T KOG0307|consen 245 ----------------------------PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV-------- 288 (1049)
T ss_pred ----------------------------chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE--------
Confidence 011234788889999999865 8999999999999999887531
Q ss_pred EeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCC-EEEEeeCCCcEEEeCCCCCCC
Q 013274 352 RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSRHIS 430 (446)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~-~lvtgs~D~~v~vW~~~~~~~ 430 (446)
+..+..-.+++.++.|.|-.- .++..|-||.|-|+.+.+.-.
T Consensus 289 -------------------------------------l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 289 -------------------------------------LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred -------------------------------------eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 223344557889999999876 677788899999998875544
Q ss_pred C
Q 013274 431 D 431 (446)
Q Consensus 431 ~ 431 (446)
+
T Consensus 332 ~ 332 (1049)
T KOG0307|consen 332 D 332 (1049)
T ss_pred c
Confidence 3
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=2.1e-16 Score=138.71 Aligned_cols=290 Identities=19% Similarity=0.229 Sum_probs=200.2
Q ss_pred eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCC-CC-ccc-cccceEEeccccccCccccEeEEEEee------cCC
Q 013274 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEG-GG-HIA-KHRSVFVVDKQHEHGHKYAISSAIWYP------VDT 116 (446)
Q Consensus 46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~gh~~~V~~~~~~~------~~~ 116 (446)
...+.|+| ||.-|++-+.|..+.+|++....-.+. .+ ... .+..+. ......|...+|++ ++.
T Consensus 52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r-------~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR-------YQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEE-------eccCCEEEEEEeeeccccCCCcc
Confidence 45678997 577788999999999999853221111 11 111 111111 12234577777774 467
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEecCC------ceEEeeeccCCCCceEEEEeeCCCcEEEEeC-CCCce--eeee-
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPG------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-ASGAI--SQTL- 186 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~-~~~~~--~~~l- 186 (446)
.++|+.+.|.-|++||.-+|+....+..-. ..++++|++++ ..|.+| ....|++||+ +.|.. ....
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG---eqlfaG-ykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG---EQLFAG-YKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC---CeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence 799999999999999999988776665322 24677888754 456665 4678999999 55532 1111
Q ss_pred ----eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcC
Q 013274 187 ----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVK 262 (446)
Q Consensus 187 ----~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (446)
.+..+-+.+++|+|....+++.|+--..+-||.-.....+.
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~----------------------------------- 244 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ----------------------------------- 244 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee-----------------------------------
Confidence 24577889999999887677888776666666533221111
Q ss_pred CCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCcEEEEecCcC
Q 013274 263 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVESG 341 (446)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~i~lWd~~~~ 341 (446)
..-+|.+-|+.|.|.+||..|.+|+. |-.|-.||++..
T Consensus 245 -----------------------------------------llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 245 -----------------------------------------LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred -----------------------------------------eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 12368888999999999999999865 678999999976
Q ss_pred ceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeec-CceEEEecccccceEEEEEcCCCCEEEEeeCCCc
Q 013274 342 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ 419 (446)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~-~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~ 419 (446)
+..+..++......+..+.+-..|++..++++ ..+.|++||+.+ +.....+..|...++.++++|--.+++|+|..
T Consensus 284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq-- 361 (406)
T KOG2919|consen 284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ-- 361 (406)
T ss_pred cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc--
Confidence 55443332222223344555566778888887 557899999988 77788899999999999999999999999876
Q ss_pred EEEeCCC
Q 013274 420 ILVWCPS 426 (446)
Q Consensus 420 v~vW~~~ 426 (446)
|++.-+
T Consensus 362 -r~f~~~ 367 (406)
T KOG2919|consen 362 -RIFKYP 367 (406)
T ss_pred -eeecCC
Confidence 666433
No 157
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.1e-17 Score=156.75 Aligned_cols=265 Identities=17% Similarity=0.295 Sum_probs=163.7
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+..|...|..+.|.+. ...|++++.||++++|++++.... .-....+++ ++.+|.++|.|++..+ +++.
T Consensus 290 l~s~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s----~~~~~epi~-----tfraH~gPVl~v~v~~-n~~~ 358 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKS----AEKDVEPIL-----TFRAHEGPVLCVVVPS-NGEH 358 (577)
T ss_pred eecchhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCc----cccceeeeE-----EEecccCceEEEEecC-CceE
Confidence 4578999999999765 457999999999999999542110 011222332 4569999999987765 8999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
++|||.||+|+.|++.. ...+++..... .....+.||.+.|+.+++
T Consensus 359 ~ysgg~Dg~I~~w~~p~----------------n~dp~ds~dp~------------------vl~~~l~Ghtdavw~l~~ 404 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPP----------------NQDPDDSYDPS------------------VLSGTLLGHTDAVWLLAL 404 (577)
T ss_pred EEeeccCceeeeeccCC----------------CCCcccccCcc------------------hhccceeccccceeeeee
Confidence 99999999999998741 01111100001 223467899999999999
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (446)
+..... |++++.||++|+|+...... ..+...+
T Consensus 405 s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~--------------------------------------------- 437 (577)
T KOG0642|consen 405 SSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPK--------------------------------------------- 437 (577)
T ss_pred cccccc-eeeecCCceEEeeccCCcCc-cccCCcc---------------------------------------------
Confidence 987665 78999999999998754321 0000000
Q ss_pred cccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEE---ecCcCceeeeeeeEE---
Q 013274 279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLW---DVESGRNTLVNFETV--- 351 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lW---d~~~~~~~~~~~~~~--- 351 (446)
-.+.-.+|+|-... ...+ .+.+.+++ +++.... +..+...
T Consensus 438 -----------------------------e~g~Plsvd~~ss~~a~~~---~s~~~~~~~~~~~ev~s~-~~~~~s~~~~ 484 (577)
T KOG0642|consen 438 -----------------------------EHGYPLSVDRTSSRPAHSL---ASFRFGYTSIDDMEVVSD-LLIFESSASP 484 (577)
T ss_pred -----------------------------ccCCcceEeeccchhHhhh---hhcccccccchhhhhhhh-eeeccccCCC
Confidence 00001111111100 0000 11111111 1111110 0000000
Q ss_pred -EeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 352 -RLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 352 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
.........+...|...+.+.+.. ..++++|..++++++....|...++++++-|+|-+|.+++.|+.|++|..+..
T Consensus 485 ~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 485 GPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 000001122333444455555543 57899999999999999999999999999999999999999999999988643
No 158
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1e-16 Score=159.83 Aligned_cols=264 Identities=20% Similarity=0.303 Sum_probs=178.3
Q ss_pred ccceeEEEe-ecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccE----eEEEEeecCCc
Q 013274 43 KGSINSLQV-DLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAI----SSAIWYPVDTG 117 (446)
Q Consensus 43 ~~~v~~l~~-s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V----~~~~~~~~~~~ 117 (446)
...|+.|.+ +..+..++++||.||.||||+-.-... .++-++.......++...- .-+.|... .+
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~---------~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~-~G 1178 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW---------KKPELVTAWSSLSDQLPGARGTGLVVDWQQQ-SG 1178 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEeccccccc---------CCceeEEeeccccccCccCCCCCeeeehhhh-CC
Confidence 357888886 344557899999999999997432110 1122233333222221100 11234433 34
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---eeeeeeCCCCC--
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHRDG-- 192 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~---~~~~l~~h~~~-- 192 (446)
.|+++|+-..|||||++..+++..++......-.+++++...+.++++|..||.|++||.+... .+...+.|++.
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 6666666889999999988888777665444444566655556799999999999999998763 46677889887
Q ss_pred eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272 (446)
Q Consensus 193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (446)
|..+.+.+.|-.-|+|||.||.|++||+|.......+.
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~------------------------------------------ 1296 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT------------------------------------------ 1296 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCcccccce------------------------------------------
Confidence 99999988665457999999999999998631000000
Q ss_pred CCceeecccceeecCCccccccCCCccccccccccc--cc-CeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeee
Q 013274 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH--YG-AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE 349 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~-~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~ 349 (446)
...| +| .+++|..+++...+|+|+. +.|+||++...... .+.
T Consensus 1297 --------------------------------iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~--~~k 1341 (1387)
T KOG1517|consen 1297 --------------------------------IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLN--IIK 1341 (1387)
T ss_pred --------------------------------eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhc--ccc
Confidence 0001 23 4899999999999999998 99999998753210 010
Q ss_pred EEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecc-cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 350 TVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~g-H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
. . ..|.+ -.+.+.|++|+|-.-+||.|+.|.+|.|+..+.+
T Consensus 1342 ~---------------n-----------------------~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1342 Y---------------N-----------------------PGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred c---------------C-----------------------cccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 0 0 00111 2345699999999999999999999999988876
Q ss_pred CCC
Q 013274 429 ISD 431 (446)
Q Consensus 429 ~~~ 431 (446)
...
T Consensus 1384 ~~~ 1386 (1387)
T KOG1517|consen 1384 RLT 1386 (1387)
T ss_pred CCC
Confidence 543
No 159
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=1.5e-16 Score=143.02 Aligned_cols=171 Identities=19% Similarity=0.348 Sum_probs=137.3
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~ 117 (446)
.+.||++.|..+.|+|-++..|||||.|.+|.||.+-.+-... ....++.. +.||...|--+.|+|.-..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-----~ltepvv~-----L~gH~rrVg~V~wHPtA~N 145 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-----DLTEPVVE-----LYGHQRRVGLVQWHPTAPN 145 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-----CcccceEE-----EeecceeEEEEeecccchh
Confidence 4679999999999999999999999999999999985432211 01122322 3589999999999998889
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe-EEE
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-MTV 196 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v-~sv 196 (446)
.|+|+|.|.+|.+||+.++..+.++.++..+++++|..+ +.++++.+.|..|+|||.++++.+..-.+|.+.- .-+
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~d---Gs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRD---GSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred hHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccC---CceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 999999999999999999998888888888999998864 4589999999999999999999988878887642 345
Q ss_pred EEecCCCeEEEEe---eCCCcEEEEEccC
Q 013274 197 EWSTSSEWILVTG---GCDGAIRFWDIRR 222 (446)
Q Consensus 197 ~~s~~~~~~l~S~---s~Dg~I~iWd~~~ 222 (446)
.|-.++. ++.|| ..+..+-|||..+
T Consensus 223 ifl~~g~-i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 223 IFLASGK-IFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred EEeccCc-eeeeccccccccceeccCccc
Confidence 5666776 44333 2467899998754
No 160
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.1e-17 Score=151.09 Aligned_cols=305 Identities=21% Similarity=0.252 Sum_probs=211.8
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC-c
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT-G 117 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~-~ 117 (446)
+.+|.|.|+.|.|+. .|..|+|||.|..|.+||...+... + .-..||...|....|.|..+ .
T Consensus 138 L~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~------------l----~f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPK------------L----SFESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred ccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcc------------c----ccccccccchhhhhccCCCCCc
Confidence 579999999999984 6889999999999999998654321 0 11248888888888877544 4
Q ss_pred EEEEEeCCCeEEEEECC-CCeee---EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee---eeeCCC
Q 013274 118 LFVTGSYDHYVKVWDTN-CTRVV---MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ---TLSGHR 190 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~---~l~~h~ 190 (446)
.+++++.||.+++=.+. ++.+. +..++.++++.++.-|+.+ .-|.+++.|+.++-+|++++.... .-+.+.
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~ 278 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE 278 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeeccCC
Confidence 68999999999998864 33332 2334678888899888765 467888999999999998875432 223344
Q ss_pred C---CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274 191 D---GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ 267 (446)
Q Consensus 191 ~---~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (446)
. ...+++..|.+.+.+++++.|--+|+||.|....- ...
T Consensus 279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e-------~~n------------------------------- 320 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE-------ENN------------------------------- 320 (559)
T ss_pred ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc-------ccc-------------------------------
Confidence 4 56789999988888999999999999998753100 000
Q ss_pred ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce-ee-
Q 013274 268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN-TL- 345 (446)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~-~~- 345 (446)
+.+......... ....-.|++++|+.++.-|++.-.|..|.++.-.-+.- ..
T Consensus 321 --------------------~~~~~f~p~hl~------~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 321 --------------------GVLDKFCPHHLV------EDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred --------------------chhhhcCCcccc------ccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 000000000000 01122489999999988888888999999994332210 00
Q ss_pred --e---eeeE--EEeecC-C-CeEE-EEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEe
Q 013274 346 --V---NFET--VRLQTS-K-PIQL-ATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG 414 (446)
Q Consensus 346 --~---~~~~--~~~~~~-~-~~~~-~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtg 414 (446)
. .+.. .+.+.+ . +.-+ .+.|...+++++++ +.+=+|+-.+++++.-+.|...-|+||-=+|--..|||.
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 0 0000 011111 1 1112 23455667777654 688899999999988888887789999999999999999
Q ss_pred eCCCcEEEeCCC
Q 013274 415 GNDRQILVWCPS 426 (446)
Q Consensus 415 s~D~~v~vW~~~ 426 (446)
+-|..||||.|-
T Consensus 455 Gid~DVKIWTP~ 466 (559)
T KOG1334|consen 455 GIDHDVKIWTPL 466 (559)
T ss_pred CCccceeeecCC
Confidence 999999999993
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=2.5e-14 Score=139.42 Aligned_cols=292 Identities=27% Similarity=0.471 Sum_probs=200.8
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccC-ccccEeEEEE-eecC
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG-HKYAISSAIW-YPVD 115 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~~~~-~~~~ 115 (446)
....|...|.++.|.+ .+..++.++.|+.+.+|+...... .+... .+ +...+..... .+ +
T Consensus 60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~-----------~~~~~-----~~~~~~~~~~~~~~~~-~ 121 (466)
T COG2319 60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEK-----------LIKSL-----EGLHDSSVSKLALSSP-D 121 (466)
T ss_pred eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCce-----------eEEEE-----eccCCCceeeEEEECC-C
Confidence 3568999999999986 577898999999999999875530 00001 11 1123333333 33 4
Q ss_pred Cc-EEEEEeC-CCeEEEEECCC-CeeeEEEe-cCCceEEeeeccCCCCceEEEEeeC-CCcEEEEeCCCCceeeeeeCCC
Q 013274 116 TG-LFVTGSY-DHYVKVWDTNC-TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASGAISQTLSGHR 190 (446)
Q Consensus 116 ~~-~l~s~s~-D~~i~iWd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~-d~~v~vwd~~~~~~~~~l~~h~ 190 (446)
+. .++..+. |+.+++||... ......+. +...+..+.+++... .+++++. |+.+++|++..+..+..+.+|.
T Consensus 122 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (466)
T COG2319 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTLAGHT 198 (466)
T ss_pred cceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEeeccCC
Confidence 44 5555455 99999999987 44444443 345566778887543 5666665 9999999999988899999999
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS 270 (446)
Q Consensus 191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (446)
..|.++.|+|++..++++++.|+.|++||.+.+.+...
T Consensus 199 ~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~------------------------------------------ 236 (466)
T COG2319 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS------------------------------------------ 236 (466)
T ss_pred CceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee------------------------------------------
Confidence 99999999988874556669999999998764332210
Q ss_pred cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274 271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET 350 (446)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~ 350 (446)
...+|.... ...|+|++.++++++.|+.+++|++.........+
T Consensus 237 ---------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-- 280 (466)
T COG2319 237 ---------------------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-- 280 (466)
T ss_pred ---------------------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--
Confidence 011233333 22799999999999999999999998754311111
Q ss_pred EEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEec--ccccceEEEEEcCCCCEEEEe-eCCCcEEEeCCC
Q 013274 351 VRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFR--GHYEYVNCCCFSSQDQELYTG-GNDRQILVWCPS 426 (446)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~--gH~~~v~~~~fSpd~~~lvtg-s~D~~v~vW~~~ 426 (446)
..+......+.+.|++..++++. ...+++|+..+........ .|...+..+.|++++..++.+ ..|+.+++|+..
T Consensus 281 -~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 281 -SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred -ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence 11223344556777666666533 2457999888777666665 899999999994342455555 788999999887
Q ss_pred CCC
Q 013274 427 RHI 429 (446)
Q Consensus 427 ~~~ 429 (446)
...
T Consensus 360 ~~~ 362 (466)
T COG2319 360 TGK 362 (466)
T ss_pred CCc
Confidence 654
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=1.8e-16 Score=142.47 Aligned_cols=205 Identities=21% Similarity=0.325 Sum_probs=147.1
Q ss_pred cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe--------cCCceEEeeeccCCCCceEEEEeeCCCc
Q 013274 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK--------MPGKVYRTAMSPLAASHMLIAAGTEDVQ 171 (446)
Q Consensus 100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~lasgs~d~~ 171 (446)
-||++.|..+.|.|.+...+||||+|.+|.||.+..+...+.+. +...+.-++++|... +.|++++.|..
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--NVLlsag~Dn~ 155 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--NVLLSAGSDNT 155 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--hhHhhccCCce
Confidence 59999999999999999999999999999999986554332221 233456677888765 47888889999
Q ss_pred EEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK 251 (446)
Q Consensus 172 v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (446)
|.+||+.+|+..-++. |.+.|.++.|+-+|.. |+|++.|..|||||.|+++.+..-
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~-l~TtckDKkvRv~dpr~~~~v~e~---------------------- 211 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL-LCTTCKDKKVRVIDPRRGTVVSEG---------------------- 211 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCce-eeeecccceeEEEcCCCCcEeeec----------------------
Confidence 9999999998877777 9999999999999985 799999999999999987543211
Q ss_pred ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccC-eEEEEEccCCCEEEEe---
Q 013274 252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSA--- 327 (446)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~fs~dg~~l~sg--- 327 (446)
.+|.|. -.-+.|-.+|..+-||
T Consensus 212 ------------------------------------------------------~~heG~k~~Raifl~~g~i~tTGfsr 237 (472)
T KOG0303|consen 212 ------------------------------------------------------VAHEGAKPARAIFLASGKIFTTGFSR 237 (472)
T ss_pred ------------------------------------------------------ccccCCCcceeEEeccCceeeecccc
Confidence 122221 1223466777755554
Q ss_pred ecCCcEEEEecCcCceeeeeeeEEEeecCCCeE-EEEcCCCcEEEEe--CCCceEEEEeecCc
Q 013274 328 GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ-LATTQDPAVVFVP--CMTAVKAFDIWSGK 387 (446)
Q Consensus 328 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~d~~~~~ 387 (446)
-+++.+-+||...-.... .+..+ ..+..+. ..+.+|..++++. ++..+|.+.+.+..
T Consensus 238 ~seRq~aLwdp~nl~eP~-~~~el--DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 238 MSERQIALWDPNNLEEPI-ALQEL--DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccceeccCcccccCcc-eeEEe--ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 357889999987643322 22222 2333333 4455666677665 34678888887655
No 163
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=1e-14 Score=138.94 Aligned_cols=280 Identities=13% Similarity=0.206 Sum_probs=169.3
Q ss_pred EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE-eCCCeEEEEECC-C
Q 013274 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-SYDHYVKVWDTN-C 135 (446)
Q Consensus 58 ~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~-s~D~~i~iWd~~-~ 135 (446)
+.++.+.|++|.+||+.+..... . +..+ .+.+....+.++| ++++|+.+ ..++.|.+|++. +
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~---~------~~~~------~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~ 67 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALT---L------LQVV------DVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADD 67 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCcee---e------eeEE------ecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCC
Confidence 34556789999999996321100 0 0000 1112233456665 77777655 458999999986 3
Q ss_pred Cee--eEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-Cc---eeeeeeCCCCCeEEEEEecCCCeEEEEe
Q 013274 136 TRV--VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GA---ISQTLSGHRDGIMTVEWSTSSEWILVTG 209 (446)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-~~---~~~~l~~h~~~v~sv~~s~~~~~~l~S~ 209 (446)
+.. +......+....+++.+.. ..++++...++.|.+||+++ +. .+..+.+ .....+++|+|++++++++.
T Consensus 68 g~l~~~~~~~~~~~p~~i~~~~~g--~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 68 GALTFAAESPLPGSPTHISTDHQG--RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred CceEEeeeecCCCCceEEEECCCC--CEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEee
Confidence 332 2333344455566777643 23444555688999999974 32 2233333 23456788999999877888
Q ss_pred eCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCc
Q 013274 210 GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGS 289 (446)
Q Consensus 210 s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (446)
..++.|.+||+.+.+.+.... ..
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~---~~------------------------------------------------------ 167 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQE---PA------------------------------------------------------ 167 (330)
T ss_pred CCCCEEEEEEECCCCcccccC---CC------------------------------------------------------
Confidence 888999999987532110000 00
Q ss_pred cccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCcEEEEecCcCceeeeeeeEEEee------cCCCeEEE
Q 013274 290 VRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVESGRNTLVNFETVRLQ------TSKPIQLA 362 (446)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~i~lWd~~~~~~~~~~~~~~~~~------~~~~~~~~ 362 (446)
..... . ......++|+|||++|.+... +++|.+|++......+.....+... ...+..+.
T Consensus 168 -~~~~~----------~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 168 -EVTTV----------E--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred -ceecC----------C--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 00000 0 012456899999999876655 9999999997421111111111110 11223477
Q ss_pred EcCCCcEEEEeCC--CceEEEEeecCceEEEeccccc---ceEEEEEcCCCCEEEEeeC-CCcEEEeCCC
Q 013274 363 TTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYE---YVNCCCFSSQDQELYTGGN-DRQILVWCPS 426 (446)
Q Consensus 363 ~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~l~gH~~---~v~~~~fSpd~~~lvtgs~-D~~v~vW~~~ 426 (446)
++|++..++++.. +.+.+|++.+.....++.+|.. ....++|+|||++|+++.. +++|.||..+
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 8899998888743 5789999966543334444432 4568999999999997665 8999999764
No 164
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=1.8e-16 Score=137.25 Aligned_cols=267 Identities=19% Similarity=0.352 Sum_probs=171.4
Q ss_pred cceeEEEee--cCCCCEEEEeeCC----CcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC--
Q 013274 44 GSINSLQVD--LTEERYLLSGASD----SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-- 115 (446)
Q Consensus 44 ~~v~~l~~s--~~~~~~l~s~s~D----g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~-- 115 (446)
-.++++.|+ ++....|+-||.- ..|.|--+..... ++ ++ .....|.++++.+.|.|..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-----e~--------~~-~a~fd~~YP~tK~~wiPd~~g 110 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-----EL--------VE-DANFDHPYPVTKLMWIPDSKG 110 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-----ce--------ec-cCCCCCCCCccceEecCCccc
Confidence 357788886 2234467777642 3455554432110 00 00 1114788999999998743
Q ss_pred --CcEEEEEeCCCeEEEEECCC--CeeeEEEe--------cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--
Q 013274 116 --TGLFVTGSYDHYVKVWDTNC--TRVVMNFK--------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-- 181 (446)
Q Consensus 116 --~~~l~s~s~D~~i~iWd~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-- 181 (446)
.++|||+|+ .+|+|.+.. .+...... ......++.+... +..++.++|-|.+..|||++++.
T Consensus 111 ~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~--dp~~igtSSiDTTCTiWdie~~~~~ 186 (364)
T KOG0290|consen 111 VYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV--DPNLIGTSSIDTTCTIWDIETGVSG 186 (364)
T ss_pred cCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccC--CcceeEeecccCeEEEEEEeecccc
Confidence 257887774 799999863 22211111 1122233333322 34589999999999999999873
Q ss_pred -eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274 182 -ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS 260 (446)
Q Consensus 182 -~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (446)
...+|-.|.++|..|+|..++..+|+|.+.||.+|++|+|....-.++....
T Consensus 187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p--------------------------- 239 (364)
T KOG0290|consen 187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP--------------------------- 239 (364)
T ss_pred ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC---------------------------
Confidence 4677889999999999999888899999999999999998643221111000
Q ss_pred cCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCC-cEEEEec
Q 013274 261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDS-RIRLWDV 338 (446)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~-~i~lWd~ 338 (446)
.-..+..-|++++ |-+|+||-..|. .|.+-|+
T Consensus 240 ----------------------------------------------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 240 ----------------------------------------------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred ----------------------------------------------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 0011233445554 345666554443 2444444
Q ss_pred CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCC-CCEEEEeeCC
Q 013274 339 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ-DQELYTGGND 417 (446)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd-~~~lvtgs~D 417 (446)
+. ....+..|++|.+.|+.++|.|. ...|+||+.|
T Consensus 274 R~--------------------------------------------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 274 RV--------------------------------------------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred cC--------------------------------------------CCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence 32 12335678999999999999997 4679999999
Q ss_pred CcEEEeCCCCCCC-------CCcCCCccCccCCCC
Q 013274 418 RQILVWCPSRHIS-------DGVDAGPMQDQDNWS 445 (446)
Q Consensus 418 ~~v~vW~~~~~~~-------~~~~~~~~~~~~~~~ 445 (446)
+++.+||++.... ..+-+|-++.|..|+
T Consensus 310 ~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws 344 (364)
T KOG0290|consen 310 CQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWS 344 (364)
T ss_pred ceEEEEecccccccCCCCchhhhhccceeeeeeec
Confidence 9999999975433 235578888888886
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=4.8e-14 Score=137.41 Aligned_cols=287 Identities=28% Similarity=0.510 Sum_probs=201.0
Q ss_pred EeCCCccceeEEEeecCCCCEEEEeeC-CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 38 IVSPHKGSINSLQVDLTEERYLLSGAS-DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~-Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
.+..|...|+.++|+| ++.++++++. |+.+++|++..... + ....+|...|.++.+.| ++
T Consensus 150 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~v~~~~~~~-~~ 210 (466)
T COG2319 150 TLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKP------------L-----STLAGHTDPVSSLAFSP-DG 210 (466)
T ss_pred EEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCce------------E-----EeeccCCCceEEEEEcC-Cc
Confidence 4568999999999997 5668888886 99999999875321 1 11235888999999985 66
Q ss_pred c-EEEEEeCCCeEEEEECCCCeeeE-EEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce-eeeeeCCCCCe
Q 013274 117 G-LFVTGSYDHYVKVWDTNCTRVVM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGI 193 (446)
Q Consensus 117 ~-~l~s~s~D~~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~-~~~l~~h~~~v 193 (446)
. .+++++.|++|++||...+..+. .+..........+++.. .++++++.|+.+++||+..... ...+.+|...+
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v 287 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG---SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCC---CEEEEecCCCcEEEeeecCCCcEEEEEecCCccE
Confidence 5 66666999999999988666665 33322221111455543 5677899999999999987664 44447889999
Q ss_pred EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG 273 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (446)
.++.|.|++.. +++++.|+.+++||++.........
T Consensus 288 ~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~------------------------------------------- 323 (466)
T COG2319 288 LSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLT------------------------------------------- 323 (466)
T ss_pred EEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEee-------------------------------------------
Confidence 99999997765 5668888999999887643221110
Q ss_pred CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe-ecCCcEEEEecCcCceeeeeeeEEE
Q 013274 274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA-GSDSRIRLWDVESGRNTLVNFETVR 352 (446)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg-s~D~~i~lWd~~~~~~~~~~~~~~~ 352 (446)
...|...+..+.|.+++..++.+ ..|+.+++|++.... ... ...
T Consensus 324 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~---~~~ 368 (466)
T COG2319 324 -------------------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLK---TLE 368 (466)
T ss_pred -------------------------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeE---Eec
Confidence 01344457888884343555555 688999999988764 111 111
Q ss_pred eecCCCeEEEEcCCCcEEEE--eCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 353 LQTSKPIQLATTQDPAVVFV--PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
. ......+.+.+ ....+. .....+.+|+.........+..+...+..+.+++++..+++++.+.++++|+...
T Consensus 369 ~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 369 G-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred C-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 0 11123444545 322332 3446789999988877776666657899999999999999999999999999877
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3.6e-17 Score=164.94 Aligned_cols=212 Identities=19% Similarity=0.351 Sum_probs=163.9
Q ss_pred CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
.-|+|.|..|.|++..+++||||+.||.|.|||+++.+..-..+ ...-...|.++.|......+|
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---------------~~~~~~eI~~lsWNrkvqhIL 177 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---------------SQAPPSEIKCLSWNRKVSHIL 177 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---------------CCCCcccceEeccchhhhHHh
Confidence 46999999999998878899999999999999998744321100 112456788999987777899
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEecCCc---eEEeeeccCCCCceEEEEeeC-CCcEEEEeCCCC-ceeeeeeCCCCCeE
Q 013274 120 VTGSYDHYVKVWDTNCTRVVMNFKMPGK---VYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASG-AISQTLSGHRDGIM 194 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lasgs~-d~~v~vwd~~~~-~~~~~l~~h~~~v~ 194 (446)
+|++.++.+-|||++..+.+..+...+. +..+.|+|......++|+... .-.|.+||++.. ..++++.+|+..|.
T Consensus 178 AS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gil 257 (1049)
T KOG0307|consen 178 ASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGIL 257 (1049)
T ss_pred hccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccccee
Confidence 9999999999999998877776665443 567888887655444444332 237899999865 46788899999999
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN 274 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (446)
++.|++.+..+|+|++.|+.|..|+..+++.+..+-
T Consensus 258 slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-------------------------------------------- 293 (1049)
T KOG0307|consen 258 SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP-------------------------------------------- 293 (1049)
T ss_pred eeccCCCCchhhhcccCCCCeeEecCCCceEeeecC--------------------------------------------
Confidence 999999987788999999999999998875443220
Q ss_pred ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEeecCCcEEEEecCcCc
Q 013274 275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGR 342 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs~D~~i~lWd~~~~~ 342 (446)
....++..+.|.|..- .++..+-||.|-|+.+.+..
T Consensus 294 --------------------------------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 --------------------------------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred --------------------------------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 0123577788988654 77888999999999988754
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.9e-14 Score=121.83 Aligned_cols=172 Identities=19% Similarity=0.338 Sum_probs=117.5
Q ss_pred eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD 125 (446)
Q Consensus 46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D 125 (446)
|++-+++|+ +++|+.|+.+|+|.+..++.-..... .-.+...+ + .+.+|.++|+.++++. ..|++|++
T Consensus 13 vf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa--~~~gk~~i-v----~eqahdgpiy~~~f~d---~~Lls~gd- 80 (325)
T KOG0649|consen 13 VFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSA--EPPGKLKI-V----PEQAHDGPIYYLAFHD---DFLLSGGD- 80 (325)
T ss_pred HHHHhhCCc-ceEEEEecCCCeEEEEEehhhhcccc--CCCCCcce-e----eccccCCCeeeeeeeh---hheeeccC-
Confidence 555567764 78999999999999998864321110 00111111 1 2368999999999973 47888875
Q ss_pred CeEEEEECCCCe------eeEEEecCC--------ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274 126 HYVKVWDTNCTR------VVMNFKMPG--------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (446)
Q Consensus 126 ~~i~iWd~~~~~------~~~~~~~~~--------~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~ 191 (446)
|.|+=|.-+... .+.....+- .++.+.+.|.. +.++.+| .|+.++-||+++|+..+.++||++
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAG-GDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEec-CCeEEEEEEecCCEEEEEEcCCcc
Confidence 999998643211 111111111 23444444432 2344444 699999999999999999999999
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccc
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ 233 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~ 233 (446)
.|-+|.--..... +.||++||++|+||++++++++.++.+.
T Consensus 158 YvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 158 YVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred eeeeeeecccCcc-eeecCCCccEEEEeccccceeEEecccc
Confidence 9999987333333 5799999999999999999998886544
No 168
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.7e-15 Score=132.24 Aligned_cols=236 Identities=18% Similarity=0.315 Sum_probs=152.7
Q ss_pred eCCCccceeEEEeecC-CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC-C
Q 013274 39 VSPHKGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-T 116 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~-~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~-~ 116 (446)
-+.|.++|..+.|.++ -|+.+|++|.|+++.||.-.... .+.. +.+-+. ......-+..|+.+.|.|.. |
T Consensus 55 Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~-~~~~----~~~Wv~---~ttl~DsrssV~DV~FaP~hlG 126 (361)
T KOG2445|consen 55 WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS-EEAH----GRRWVR---RTTLVDSRSSVTDVKFAPKHLG 126 (361)
T ss_pred EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc-cccc----cceeEE---EEEeecCCcceeEEEecchhcc
Confidence 3579999999999654 48999999999999999743111 1100 011111 11223456789999998743 4
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEec--------------CCceEEeeeccCCCCceEEEEeeCC-----CcEEEEeC
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM--------------PGKVYRTAMSPLAASHMLIAAGTED-----VQVRLCDI 177 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~lasgs~d-----~~v~vwd~ 177 (446)
-.+|+++.||++|||+....--+...++ .....++.+.+.-....+||.|+.+ +.++||..
T Consensus 127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 5689999999999998754432322221 1224566666543334578888765 37888876
Q ss_pred CCC--c--eeeeeeCCCCCeEEEEEecCCC---eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274 178 ASG--A--ISQTLSGHRDGIMTVEWSTSSE---WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS 250 (446)
Q Consensus 178 ~~~--~--~~~~l~~h~~~v~sv~~s~~~~---~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (446)
..+ + .+..|.+|.++|..++|.|+-. .+|++++.|| |+||.++.... .+. ....
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s--~i~-------------~ee~--- 267 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS--AIE-------------EEEV--- 267 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccc--hhh-------------hhcc---
Confidence 544 2 3457889999999999999743 3788999999 99999863210 000 0000
Q ss_pred cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC
Q 013274 251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD 330 (446)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D 330 (446)
.+ +... .. + .+......-.|.+.|..+.|+--|..|+|.|.|
T Consensus 268 --~~------------------~~~~-----~~----------l---~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 268 --LA------------------PDLM-----TD----------L---PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred --cC------------------CCCc-----cc----------c---ceEEeeeccCCCCceEEEEEeeeeeEEeecCCC
Confidence 00 0000 00 0 000011234799999999999999999999999
Q ss_pred CcEEEEecC
Q 013274 331 SRIRLWDVE 339 (446)
Q Consensus 331 ~~i~lWd~~ 339 (446)
|.||+|-..
T Consensus 310 G~VRLWkan 318 (361)
T KOG2445|consen 310 GCVRLWKAN 318 (361)
T ss_pred ceeeehhhh
Confidence 999999543
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.70 E-value=4.3e-15 Score=130.55 Aligned_cols=244 Identities=17% Similarity=0.267 Sum_probs=171.7
Q ss_pred EEEEeecCCcEEEEEeCCCeEEEEECCCC--------------eeeEEEecCCceEEeeec----cCCCCceEEEEeeCC
Q 013274 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCT--------------RVVMNFKMPGKVYRTAMS----PLAASHMLIAAGTED 169 (446)
Q Consensus 108 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~lasgs~d 169 (446)
.+.|+| ||.-|++-+.|..+++|++... .....++..+.++.-++. .+.++..++|+.+.+
T Consensus 54 gckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 54 GCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred cceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 356887 8999999999999999997421 112223333445544443 334566789999999
Q ss_pred CcEEEEeCCCCceeeeee--CCCCCe---EEEEEecCCCeEEEEeeCCCcEEEEEc-cCCceeEEeecccccccCCCccc
Q 013274 170 VQVRLCDIASGAISQTLS--GHRDGI---MTVEWSTSSEWILVTGGCDGAIRFWDI-RRAGCFRVLDQSQSQLGRRPPLL 243 (446)
Q Consensus 170 ~~v~vwd~~~~~~~~~l~--~h~~~v---~sv~~s~~~~~~l~S~s~Dg~I~iWd~-~~~~~~~~~~~~~~~~~~~~~~~ 243 (446)
.-|++||.-+|+....+. .|.+.+ .++.|+|+|..+ . ++....||++|+ |.+..+..+..
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeql-f-aGykrcirvFdt~RpGr~c~vy~t------------ 198 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQL-F-AGYKRCIRVFDTSRPGRDCPVYTT------------ 198 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeE-e-ecccceEEEeeccCCCCCCcchhh------------
Confidence 999999999998766554 466655 578999999974 3 456789999998 43321110000
Q ss_pred ccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC-CC
Q 013274 244 KRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GM 322 (446)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~ 322 (446)
... ...+..+-|.+++|+|- .+
T Consensus 199 --------------------------------------------------~~~-------~k~gq~giisc~a~sP~~~~ 221 (406)
T KOG2919|consen 199 --------------------------------------------------VTK-------GKFGQKGIISCFAFSPMDSK 221 (406)
T ss_pred --------------------------------------------------hhc-------ccccccceeeeeeccCCCCc
Confidence 000 00122455889999995 56
Q ss_pred EEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeec-CceEEEecccccce
Q 013274 323 YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWS-GKTCLTFRGHYEYV 399 (446)
Q Consensus 323 ~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~-~~~~~~l~gH~~~v 399 (446)
.++.|+-..++-|++-...++. ..+..+.+.+..+.+.+++..+++++ ...+..||+.. +.++..|.+|.+.-
T Consensus 222 ~~a~gsY~q~~giy~~~~~~pl----~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T 297 (406)
T KOG2919|consen 222 TLAVGSYGQRVGIYNDDGRRPL----QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT 297 (406)
T ss_pred ceeeecccceeeeEecCCCCce----eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCc
Confidence 8999999999999976655432 22334567788899999999999975 46889999954 56778888887622
Q ss_pred E-E--EEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 400 N-C--CCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 400 ~-~--~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
+ . +..-|++++|++|+.||.|++|+...
T Consensus 298 NQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 298 NQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred cceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 1 2 33458999999999999999999875
No 170
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=4.4e-15 Score=150.53 Aligned_cols=173 Identities=17% Similarity=0.237 Sum_probs=117.1
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+..|+..|+.++.+++.+.+++|||.||+||+||+..-.. +....++.+.- ..-...+.++...+ ++++
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~-----~~~s~rS~lty-----s~~~sr~~~vt~~~-~~~~ 1112 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG-----EGGSARSELTY-----SPEGSRVEKVTMCG-NGDQ 1112 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhc-----CcceeeeeEEE-----eccCCceEEEEecc-CCCe
Confidence 4578999999999876669999999999999999864321 11112222111 11122344444443 6789
Q ss_pred EEEEeCCCeEEEEECCCCe-------eeEEEe--cCCceE-EeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee-
Q 013274 119 FVTGSYDHYVKVWDTNCTR-------VVMNFK--MPGKVY-RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS- 187 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~-------~~~~~~--~~~~~~-~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~- 187 (446)
+|.++.||.|++.+++... +.+... ..|.+- .-++.....+ ..++.+...+.|..||+++....++++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc-eeEEEEEeccceEEecchhhhhHHhhhc
Confidence 9999999999999987521 111111 123322 2223322233 477888889999999998876665554
Q ss_pred -CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc
Q 013274 188 -GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224 (446)
Q Consensus 188 -~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~ 224 (446)
-..+.|++++.+|.+.| ++.|...|.+.+||+|-+.
T Consensus 1192 ~~~hG~vTSi~idp~~~W-lviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNW-LVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred CccccceeEEEecCCceE-EEEecCCceEEEEEeecCc
Confidence 34678999999999987 6899999999999998543
No 171
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7.8e-15 Score=144.91 Aligned_cols=200 Identities=17% Similarity=0.266 Sum_probs=148.8
Q ss_pred CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (446)
Q Consensus 42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s 121 (446)
|...|.+++.. +.+|++|+.+++|.+|....++.- +.+ ..-+-.+..+++.. +|..+|.
T Consensus 55 ~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~---~iL--------------~Rftlp~r~~~v~g-~g~~iaa 113 (933)
T KOG1274|consen 55 SGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEED---TIL--------------ARFTLPIRDLAVSG-SGKMIAA 113 (933)
T ss_pred cCceeEEEeec---ccceEEeeccceEEEeeCCCCCcc---cee--------------eeeeccceEEEEec-CCcEEEe
Confidence 67788888774 347999999999999998655421 111 12233455666654 7889999
Q ss_pred EeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC--------CCC
Q 013274 122 GSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH--------RDG 192 (446)
Q Consensus 122 ~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h--------~~~ 192 (446)
||+|..|++-++.+....+.+. +.+++..+.+.| ...+||+.+-||+|++||+.++.+..++.+- ...
T Consensus 114 gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p---~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i 190 (933)
T KOG1274|consen 114 GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP---KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI 190 (933)
T ss_pred ecCceeEEEEeccccchheeecccCCceeeeeEcC---CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccce
Confidence 9999999999998776655443 567788888877 4568999999999999999999877665431 334
Q ss_pred eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272 (446)
Q Consensus 193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (446)
+..++|+|++.. |+..+.|+.|++|+..+......+.
T Consensus 191 ~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~f~Lr------------------------------------------ 227 (933)
T KOG1274|consen 191 CTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQFKLR------------------------------------------ 227 (933)
T ss_pred eeeeeecCCCCe-EEeeccCCeEEEEccCCceeheeec------------------------------------------
Confidence 577899999765 5677889999999976543221110
Q ss_pred CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~ 340 (446)
..-|...++.+.|+|+|+|||+++.||.|-|||+++
T Consensus 228 --------------------------------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 228 --------------------------------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred --------------------------------ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 011223388999999999999999999999999986
No 172
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.69 E-value=3.6e-15 Score=137.80 Aligned_cols=269 Identities=13% Similarity=0.176 Sum_probs=176.8
Q ss_pred EEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC--e
Q 013274 60 LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--R 137 (446)
Q Consensus 60 ~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--~ 137 (446)
-.+|...+++|||....+.... ++.. ...| .+.++.|...+.-.+++.+.|+.+++|.=... +
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~-----------~~~~--t~~p--g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~ 70 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSE-----------YVHQ--TAEP--GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE 70 (673)
T ss_pred eeeccCCceEEeecccccCccc-----------cccC--CCCC--cceeeeccccceEEEeecCCceeEEEecccCCCCc
Confidence 3444555799999865432110 0000 0112 26777887644334567788999999964432 2
Q ss_pred eeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEE
Q 013274 138 VVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIR 216 (446)
Q Consensus 138 ~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~ 216 (446)
+-..-...+ ...++++... ..++++|+..+.|+|||++...+.+.+++|+..|++|.++-.+.+ |++++..|.|.
T Consensus 71 Vp~~~k~~gd~~~Cv~~~s~---S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdii 146 (673)
T KOG4378|consen 71 VPRVRKLTGDNAFCVACASQ---SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDII 146 (673)
T ss_pred cceeeccccchHHHHhhhhc---ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce-eEEeccCCcEE
Confidence 211111222 2233333322 257899999999999999987788899999999999999988776 79999999999
Q ss_pred EEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCC
Q 013274 217 FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP 296 (446)
Q Consensus 217 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (446)
|-.+.++.....|.
T Consensus 147 ih~~~t~~~tt~f~------------------------------------------------------------------ 160 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFT------------------------------------------------------------------ 160 (673)
T ss_pred EEecccCcccccee------------------------------------------------------------------
Confidence 99876542110000
Q ss_pred CcccccccccccccCeEEEEEccCCCE-EEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEE--e
Q 013274 297 GMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFV--P 373 (446)
Q Consensus 297 ~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 373 (446)
.+....|+-|.|+|..++ |.+++.+|.|.+||+....+.+. ....+..+..-++++|.-..+++ +
T Consensus 161 ---------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~---~~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 161 ---------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH---ASEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred ---------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc---hhhhccCCcCcceecCCccceEEEec
Confidence 001123677899998764 67789999999999987543321 11222223334677775444333 3
Q ss_pred CCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 374 CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 374 ~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
.+..+.++|+.+.+....|. -.-+.+.|+|+++|.+|+.|...|.|..+|+.
T Consensus 229 ~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 229 YDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred ccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 45678999998766554443 23468999999999999999999999999986
No 173
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.68 E-value=2.6e-15 Score=132.24 Aligned_cols=257 Identities=18% Similarity=0.261 Sum_probs=171.6
Q ss_pred CccceeEEEeecC---CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 42 HKGSINSLQVDLT---EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 42 H~~~v~~l~~s~~---~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
|..+-+.++|+-+ ++.+||.|+.-|-|+|.|+..+... ....||..+|..+.++|.+.++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-----------------~~~~ghG~sINeik~~p~~~ql 150 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-----------------KNYRGHGGSINEIKFHPDRPQL 150 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc-----------------cceeccCccchhhhcCCCCCcE
Confidence 6777788887533 2458999999999999999766532 1234899999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEe----cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce------e-----
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFK----MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI------S----- 183 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~------~----- 183 (446)
+++||.|.+||+|++.+..++.-|. +.+.+.++.++.++ ..|++++.|.++++|++..... .
T Consensus 151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g---d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~ 227 (385)
T KOG1034|consen 151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG---DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP 227 (385)
T ss_pred EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC---CeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence 9999999999999999999988775 23457788887654 4899999999999999973210 0
Q ss_pred -----------e------eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccc
Q 013274 184 -----------Q------TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK 246 (446)
Q Consensus 184 -----------~------~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (446)
. +-.-|...|.||.|-. . +++|=|.++.|..|..-+.+ ..++.....
T Consensus 228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d-~ilSkscenaI~~w~pgkl~--e~~~~vkp~----------- 291 (385)
T KOG1034|consen 228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D-FILSKSCENAIVCWKPGKLE--ESIHNVKPP----------- 291 (385)
T ss_pred CCccCcCCccccccccccccccccchHHHHHHHh--h-heeecccCceEEEEecchhh--hhhhccCCC-----------
Confidence 0 1123788888888864 3 46798999999999752111 000000000
Q ss_pred eeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEE--EccCCCEE
Q 013274 247 VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK--VTEDGMYL 324 (446)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--fs~dg~~l 324 (446)
..... -.+.+ .--...|.-|. |.|-++.|
T Consensus 292 ------------------------es~~T----i~~~~---------------------~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 292 ------------------------ESATT----ILGEF---------------------DYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred ------------------------cccee----eeeEe---------------------ccCccceEEEEEeecHHHHHH
Confidence 00000 00000 00012355554 45668899
Q ss_pred EEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEe
Q 013274 325 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDI 383 (446)
Q Consensus 325 ~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 383 (446)
|.|.+.|.|.+||++...+...............-+.+++.|+.+++..+.+ .|--||.
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9999999999999998654211111111222344568899999888777663 5666664
No 174
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.68 E-value=1.5e-15 Score=139.00 Aligned_cols=207 Identities=24% Similarity=0.317 Sum_probs=150.7
Q ss_pred CccccEeEEEEeecCC-cEEEEEeCCCeEEEEECCCCee----eEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274 101 GHKYAISSAIWYPVDT-GLFVTGSYDHYVKVWDTNCTRV----VMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL 174 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v 174 (446)
-|...|+++.|+|... +++|+|+.-|.|=+||+.+.+. +..+ .+.+++.++.|.|... ..+.+.|.||+|++
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~--s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT--SQIYSSSYDGTIRL 261 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh--hheeeeccCceeee
Confidence 5778899999999777 7899999999999999953221 2222 3455688888888654 35778899999999
Q ss_pred EeCCCCce--eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274 175 CDIASGAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS 252 (446)
Q Consensus 175 wd~~~~~~--~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (446)
-|++++.. +..+..-.....+..|+-+...++ .+..=|...+||+|+++--
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~-------------------------- 314 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSE-------------------------- 314 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCcc--------------------------
Confidence 99998743 333433445566777877776554 5554468999999875310
Q ss_pred cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCC
Q 013274 253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDS 331 (446)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~ 331 (446)
...+.-|...|+.|+++|.. .+|+|+|.|+
T Consensus 315 -------------------------------------------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 315 -------------------------------------------------YENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred -------------------------------------------------chhhhhhhcccceeecCCCCchheeecccCc
Confidence 00123455679999999976 5789999999
Q ss_pred cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEE
Q 013274 332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL 411 (446)
Q Consensus 332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~l 411 (446)
+++|||++.-... .+ + ......|...|+++.|||++..|
T Consensus 346 T~kIWD~R~l~~K----------~s-p------------------------------~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 346 TAKIWDLRQLRGK----------AS-P------------------------------FLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred ceeeeehhhhcCC----------CC-c------------------------------ceecccccceeeeeEEcCCCCce
Confidence 9999999752210 00 0 01123499999999999999889
Q ss_pred EEeeCCCcEEEeCCC
Q 013274 412 YTGGNDRQILVWCPS 426 (446)
Q Consensus 412 vtgs~D~~v~vW~~~ 426 (446)
+|.+.|+.||||+..
T Consensus 385 ~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSS 399 (498)
T ss_pred EeeccCCceEEeecc
Confidence 999999999999983
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=4.4e-15 Score=141.68 Aligned_cols=287 Identities=15% Similarity=0.191 Sum_probs=196.7
Q ss_pred ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (446)
Q Consensus 45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~ 124 (446)
+|+.++|-|+ |..|+-+. +..+.+||.++|.. .++..||+..|++++++. ||++||||+.
T Consensus 14 ci~d~afkPD-GsqL~lAA-g~rlliyD~ndG~l-----------------lqtLKgHKDtVycVAys~-dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPD-GTQLILAA-GSRLLVYDTSDGTL-----------------LQPLKGHKDTVYCVAYAK-DGKRFASGSA 73 (1081)
T ss_pred chheeEECCC-CceEEEec-CCEEEEEeCCCccc-----------------ccccccccceEEEEEEcc-CCceeccCCC
Confidence 8999999875 44454443 44699999988753 245679999999999886 8999999999
Q ss_pred CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCe
Q 013274 125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW 204 (446)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~ 204 (446)
|+.|.+|+..- +.+.++.+...+.++.|.|.. .++++++. ...-+|..+....++.- ....+.+.+|..||++
T Consensus 74 DK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP~~---h~LasCsL-sdFglWS~~qK~V~K~k--ss~R~~~CsWtnDGqy 146 (1081)
T KOG1538|consen 74 DKSVIIWTSKL-EGILKYSHNDAIQCMSFNPIT---HQLASCSL-SDFGLWSPEQKSVSKHK--SSSRIICCSWTNDGQY 146 (1081)
T ss_pred ceeEEEecccc-cceeeeccCCeeeEeecCchH---HHhhhcch-hhccccChhhhhHHhhh--hheeEEEeeecCCCcE
Confidence 99999998642 334557777778888887754 35666654 34678887665433221 2356788899999986
Q ss_pred EEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccccee
Q 013274 205 ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI 284 (446)
Q Consensus 205 ~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (446)
|+-|-.||+|.|-+-. ++.-..+
T Consensus 147 -lalG~~nGTIsiRNk~-gEek~~I------------------------------------------------------- 169 (1081)
T KOG1538|consen 147 -LALGMFNGTISIRNKN-GEEKVKI------------------------------------------------------- 169 (1081)
T ss_pred -EEEeccCceEEeecCC-CCcceEE-------------------------------------------------------
Confidence 7889999999877522 1100000
Q ss_pred ecCCccccccCCCcccccccccccccCeEEEEEccCCC-----EEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCe
Q 013274 285 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-----YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 359 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-----~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~ 359 (446)
++.-+...+|.+++|+|... .++......++-++.+... +. ...+.-.-.+.
T Consensus 170 ------------------~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---~I--gk~r~L~FdP~ 226 (1081)
T KOG1538|consen 170 ------------------ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---QI--GKDRALNFDPC 226 (1081)
T ss_pred ------------------eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---ee--cccccCCCCch
Confidence 01113346799999998643 5666777777777776531 11 10000012355
Q ss_pred EEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcCCCcc
Q 013274 360 QLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPM 438 (446)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~~~~~ 438 (446)
.+.+.+++.++.+++.+..--+.-.+|-.+.++.....+|+.++..|+++.++-|.-||+|.-+++--+.+-++.-.+|
T Consensus 227 CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RY 305 (1081)
T KOG1538|consen 227 CISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRY 305 (1081)
T ss_pred hheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhh
Confidence 6778888888888765543333334555667777778899999999999999999999999999886555544444433
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=1e-16 Score=156.11 Aligned_cols=236 Identities=22% Similarity=0.369 Sum_probs=168.7
Q ss_pred cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (446)
Q Consensus 100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~ 178 (446)
.||..+|+|+++-. .+.++++|++|..++||..+++.++..... .+.+...+.. .+..++|++|.|..|++|-+.
T Consensus 187 lgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs---~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS---SNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred Hhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccc---hhhhhhhhcccCceEEEEecC
Confidence 49999999987754 688999999999999999998887765442 2333333332 345679999999999999999
Q ss_pred CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274 179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN 258 (446)
Q Consensus 179 ~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (446)
++.++..|.||++.|++++|+|- .+.+.||++++||.|-. .+.....
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~----~~~y~pr------------------------ 309 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLE----PRIYVPR------------------------ 309 (1113)
T ss_pred CCchHHHHhccccceeeeccCcc-----ccCCCCCceEecccccc----ccccCCC------------------------
Confidence 99999999999999999999983 48889999999998711 1100000
Q ss_pred CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274 259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 338 (446)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~ 338 (446)
+... .....+..+.|-..+..++||+.|+..+.|.+
T Consensus 310 -------------------------------------p~~~-------~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 310 -------------------------------------PLKF-------TEKDLVDSILFENNGDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred -------------------------------------CCCc-------ccccceeeeeccccccccccccCCcccccchh
Confidence 0000 00123556677788888999999999999976
Q ss_pred CcCce--eeeeeeEEEeecCCCeEEEEcCC-CcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEE-E
Q 013274 339 ESGRN--TLVNFETVRLQTSKPIQLATTQD-PAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY-T 413 (446)
Q Consensus 339 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv-t 413 (446)
.-... ....|.. ...+ ..++..+- .-...+|++.+|.+.+.+.+|...+..+.|+|=+..++ +
T Consensus 346 ~~l~~~~~~lif~t------------~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 346 EQLAWRSNLLIFVT------------RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred hHhhhhccceEEEe------------ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 53211 1111111 0001 11111111 12456899999999999999999999999999776665 8
Q ss_pred eeCCCcEEEeCCCCC
Q 013274 414 GGNDRQILVWCPSRH 428 (446)
Q Consensus 414 gs~D~~v~vW~~~~~ 428 (446)
++.||...||+.-.+
T Consensus 414 ag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEG 428 (1113)
T ss_pred ccCCCceEeeecccC
Confidence 999999999987544
No 177
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=2.4e-13 Score=121.84 Aligned_cols=244 Identities=16% Similarity=0.251 Sum_probs=166.7
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s 123 (446)
..++.+.|+. +...|..|+.|| -++++.+.-.+... ...-...|..+.|+ ..++|-.+
T Consensus 6 ~ti~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k~~~-----------------~~~~~~~IvEmLFS---SSLvaiV~ 63 (391)
T KOG2110|consen 6 PTINFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEKCFS-----------------KDTEGVSIVEMLFS---SSLVAIVS 63 (391)
T ss_pred cceeeeeecc-ceeEEEccCCCc-eeEEecCchHHhhc-----------------ccCCCeEEEEeecc---cceeEEEe
Confidence 4567777874 566788888888 57887754322100 00011123333443 34666655
Q ss_pred CC--CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee---CCCCCeEEEEE
Q 013274 124 YD--HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS---GHRDGIMTVEW 198 (446)
Q Consensus 124 ~D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~---~h~~~v~sv~~ 198 (446)
.+ +.+++.++.....+..+..+..+.++.+.. .++++.- .+.|+|+|+++-+++.++. .+...+.++++
T Consensus 64 ~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr-----~RLvV~L-ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 64 IKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR-----KRLVVCL-EESIYIYDIKDMKLLHTIETTPPNPKGLCALSP 137 (391)
T ss_pred cCCCceEEEEEcccCceEEEEecCCceEEEEEcc-----ceEEEEE-cccEEEEecccceeehhhhccCCCccceEeecc
Confidence 55 459999999888888888888887777653 3444443 4459999999998887764 45666778777
Q ss_pred ecCCCeEEEEeeC-CCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274 199 STSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277 (446)
Q Consensus 199 s~~~~~~l~S~s~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (446)
++.+.++..=++. -|.|.+||+.+.....
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~-------------------------------------------------- 167 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTINLQPVN-------------------------------------------------- 167 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEcccceeee--------------------------------------------------
Confidence 7766664333443 4889999976532111
Q ss_pred ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCc-EEEEecCcCceeeeeeeEEEeecC
Q 013274 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR-IRLWDVESGRNTLVNFETVRLQTS 356 (446)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~-i~lWd~~~~~~~~~~~~~~~~~~~ 356 (446)
...+|.+++.+|+|+++|++|||+|..|+ ||++.+.+++. +.+|. .+
T Consensus 168 --------------------------~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-l~eFR-----RG 215 (391)
T KOG2110|consen 168 --------------------------TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-LYEFR-----RG 215 (391)
T ss_pred --------------------------EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE-eeeee-----CC
Confidence 12479999999999999999999999999 48998887642 21111 10
Q ss_pred CCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcC
Q 013274 357 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD 434 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~ 434 (446)
. . --.|.+++||||+++|+..|.-++|.|+.++....++..
T Consensus 216 ~-----------~--------------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~ 256 (391)
T KOG2110|consen 216 T-----------Y--------------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPE 256 (391)
T ss_pred c-----------e--------------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCC
Confidence 0 0 124789999999999999999999999999866655544
No 178
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6.5e-15 Score=139.00 Aligned_cols=242 Identities=19% Similarity=0.252 Sum_probs=165.5
Q ss_pred cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC---------
Q 013274 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--------- 170 (446)
Q Consensus 100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--------- 170 (446)
.||++.|.++...| .|..|++||+||+||||.+.++.+++++++.+.+.+++|.|.... .+||++-.+.
T Consensus 397 rGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~-~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 397 RGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL-CVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred eccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCc-eeEEEEecCceEEeCcccc
Confidence 59999999998887 788999999999999999999999999999999999999997643 3444433222
Q ss_pred -----------------------cEEEEeCCCCc----eeeeeeCCCCCeEEEEEecCCCeEEEEeeCC---CcEEEEEc
Q 013274 171 -----------------------QVRLCDIASGA----ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD---GAIRFWDI 220 (446)
Q Consensus 171 -----------------------~v~vwd~~~~~----~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D---g~I~iWd~ 220 (446)
.+..|.-.... -+...-.|...|..|.|+..|.| |++...| ..|.|.++
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY-latV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY-LATVMPDSGNKSVLIHQL 553 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce-EEEeccCCCcceEEEEec
Confidence 23344322110 11223347778888888888876 4555443 34666665
Q ss_pred cCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCccc
Q 013274 221 RRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLS 300 (446)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (446)
......
T Consensus 554 SK~~sQ-------------------------------------------------------------------------- 559 (733)
T KOG0650|consen 554 SKRKSQ-------------------------------------------------------------------------- 559 (733)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 432100
Q ss_pred ccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceE
Q 013274 301 SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVK 379 (446)
Q Consensus 301 ~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 379 (446)
..+..-.|.|-++.|+|...+|+.++.. .|++||+...... ..+.+ .......++..+.+.-+++++. ..+.
T Consensus 560 --~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelv-KkL~t---g~kwiS~msihp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 560 --SPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELV-KKLLT---GSKWISSMSIHPNGDNLILGSYDKKMC 632 (733)
T ss_pred --CchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHH-HHHhc---CCeeeeeeeecCCCCeEEEecCCCeeE
Confidence 0001113458889999999888877754 6999999863210 00000 0011234566676666666554 4555
Q ss_pred EEEee-cCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274 380 AFDIW-SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 380 ~~d~~-~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
-+|+. +.+..++++-|...|..|+|++--.+++|||.|+++.|+.-
T Consensus 633 WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred EEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 56764 44678899999999999999999999999999999999943
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.6e-15 Score=140.30 Aligned_cols=167 Identities=23% Similarity=0.361 Sum_probs=123.2
Q ss_pred eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC-
Q 013274 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD- 115 (446)
Q Consensus 37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~- 115 (446)
..+.||+|.||||.|+. +|.+|+|||.|-.+.|||.-..+ .++.+ ..||...|.++.|.|..
T Consensus 44 ~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~K------------llhsI----~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYK------------LLHSI----STGHTANIFSVKFVPYTN 106 (758)
T ss_pred hhhccccceecceeecC-CCCEEeecCCcceEEeecchhcc------------eeeee----ecccccceeEEeeeccCC
Confidence 45789999999999985 68999999999999999975322 12222 25999999999998854
Q ss_pred CcEEEEEeCCCeEEEEECCCCe----------eeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTR----------VVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--- 181 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--- 181 (446)
..+++||+.|..|+++|+...+ ....+.+ ...+..++..+..+ ..+-+++.||.|+-+|++...
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--htfwsasEDGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--HTFWSASEDGTIRQYDIREPHVCN 184 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--ceEEEecCCcceeeecccCCccCC
Confidence 4578899999999999997421 1122221 22344556666544 478899999999999997532
Q ss_pred ----ee---eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274 182 ----IS---QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (446)
Q Consensus 182 ----~~---~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~ 222 (446)
+. ..+...--...++.++|...++|+.|+.|--.++||.|.
T Consensus 185 p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 185 PDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred ccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 11 112222335688999999999999999999999999763
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=1.8e-14 Score=124.96 Aligned_cols=212 Identities=19% Similarity=0.255 Sum_probs=155.0
Q ss_pred CCccceeEEEeecCC----CCEEEEeeCCCcEEEEEcccCc-CCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274 41 PHKGSINSLQVDLTE----ERYLLSGASDSSVAVYDVQRAT-DYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~----~~~l~s~s~Dg~i~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~ 115 (446)
.|--+++.+.|.|+. .++|||.|. .+|||.+...+ .......+ .......+..++++-.|...+
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L---------~~~kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVL---------NNNKNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhh---------ccCcccccCCcccccccccCC
Confidence 588899999998753 246766543 79999986432 11111111 111123456678888888888
Q ss_pred CcEEEEEeCCCeEEEEECCCCee---e-EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee---C
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRV---V-MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS---G 188 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~---~ 188 (446)
..++.++|-|.|..|||++++.. . ..+.+...++.++|... +..+||+.+.||+||+||++.-+....+. .
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~--s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG--SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC--ccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 89999999999999999998732 2 22345667999999873 34689999999999999999876544432 2
Q ss_pred CCCCeEEEEEecCCCeEEEEeeCC-CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274 189 HRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ 267 (446)
Q Consensus 189 h~~~v~sv~~s~~~~~~l~S~s~D-g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (446)
...+..-++|++.+.++|||-..| ..|.|-|+|....
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t------------------------------------------ 278 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT------------------------------------------ 278 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc------------------------------------------
Confidence 356788899999888888887766 4699999884310
Q ss_pred ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCc
Q 013274 268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~ 340 (446)
+..++.+|.+.|++++|.|.. ..|+|+|.|..+-+||+..
T Consensus 279 ---------------------------------pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 279 ---------------------------------PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ---------------------------------ceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 011245799999999999975 6899999999999999975
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.3e-13 Score=134.32 Aligned_cols=297 Identities=18% Similarity=0.264 Sum_probs=191.8
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEEEccc--CcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQR--ATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
.|+-.+++.+++| .++++|+|-.||.|.+|.--. +..+ ..+.++=|..+|.++.|++ +|.+
T Consensus 203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~---------------t~t~lHWH~~~V~~L~fS~-~G~~ 265 (792)
T KOG1963|consen 203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSE---------------TCTLLHWHHDEVNSLSFSS-DGAY 265 (792)
T ss_pred hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccc---------------cceEEEecccccceeEEec-CCce
Confidence 5777789999997 589999999999999996322 1111 0112244778999999887 8999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC----------
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG---------- 188 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~---------- 188 (446)
|+|||..+-+-+|.++++....--.+.+.+..+.+++++ .+.+....|++|.+....+-+...++.|
T Consensus 266 LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds---~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~ 342 (792)
T KOG1963|consen 266 LLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDS---DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKT 342 (792)
T ss_pred EeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCC---CeEEEEecCceEEEEeccchhhhhhccCccCCCccccc
Confidence 999999999999999998855544567788888888754 4677777899999887754433333222
Q ss_pred -CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274 189 -HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ 267 (446)
Q Consensus 189 -h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (446)
.++-.+.++++|.-+ .++-.+.-|.|.+||+.+...++-++......
T Consensus 343 ~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~------------------------------- 390 (792)
T KOG1963|consen 343 RPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY------------------------------- 390 (792)
T ss_pred cccccceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecc-------------------------------
Confidence 345567788888443 46678888999999998765443332110000
Q ss_pred ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec--------C--CcEEEEe
Q 013274 268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS--------D--SRIRLWD 337 (446)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~--------D--~~i~lWd 337 (446)
..+. .-+.-.+++++++..|.+++|+-. | -.+|+|-
T Consensus 391 ------------------~~~~----------------~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 391 ------------------SDGD----------------VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred ------------------cCCc----------------ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 0000 012234677777777888877632 2 2468886
Q ss_pred cCcCceeeeeeeEEEeec--CCCeEEEEcC-CCc-EEEEe-CCCceEEEEeec------------CceEEEecccccceE
Q 013274 338 VESGRNTLVNFETVRLQT--SKPIQLATTQ-DPA-VVFVP-CMTAVKAFDIWS------------GKTCLTFRGHYEYVN 400 (446)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~-~~~~~-~~~~~~~~d~~~------------~~~~~~l~gH~~~v~ 400 (446)
......... +.+....+ ...+..++.+ ... +.+.+ .+..+++|...+ .+....| |..+++
T Consensus 437 ~n~~~kt~~-L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy--~k~~i~ 513 (792)
T KOG1963|consen 437 YNPNSKTFI-LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY--HKTPIT 513 (792)
T ss_pred EcCCcceeE-EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc--ccCccc
Confidence 544322211 22211111 1112222222 222 33343 456789997732 2223333 899999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 401 CCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 401 ~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
.++||.||. |+++|.|++|.+|++.+
T Consensus 514 a~~fs~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 514 ALCFSQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred chhhcCCCc-EEEEecCCEEEEecCCC
Confidence 999999995 55789999999999987
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=4.6e-14 Score=138.62 Aligned_cols=253 Identities=16% Similarity=0.194 Sum_probs=171.2
Q ss_pred ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-CCcEEEE
Q 013274 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTGLFVT 121 (446)
Q Consensus 43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-~~~~l~s 121 (446)
...|.++.|+|.+..+||.|.-+|.|.+||+..+..... .........|...|+.+.|... .+.-|+|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-----------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-----------SGLSALEVSHSEPVTAVVWLQNEHNTEFFS 310 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-----------cccccccccCCcCeEEEEEeccCCCCceEE
Confidence 367999999998889999999999999999976543110 0011223578999999988541 1245899
Q ss_pred EeCCCeEEEEECCCCee------eEEEe-------cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC---c----
Q 013274 122 GSYDHYVKVWDTNCTRV------VMNFK-------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG---A---- 181 (446)
Q Consensus 122 ~s~D~~i~iWd~~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~---~---- 181 (446)
+|.||.|..|+++--.. ..... ....+..+.|.+..+ ..++.|+.+|.|..-+-... .
T Consensus 311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p--~~FiVGTe~G~v~~~~r~g~~~~~~~~~ 388 (555)
T KOG1587|consen 311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP--NHFIVGTEEGKVYKGCRKGYTPAPEVSY 388 (555)
T ss_pred EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC--ceEEEEcCCcEEEEEeccCCcccccccc
Confidence 99999999998753211 00000 112245566666544 46889999999987443322 1
Q ss_pred -eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc-CCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274 182 -ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR-RAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS 259 (446)
Q Consensus 182 -~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (446)
....+..|.++|.+|.++|-...+|.|++ |-+++||... ....+.
T Consensus 389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~-------------------------------- 435 (555)
T KOG1587|consen 389 KGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLL-------------------------------- 435 (555)
T ss_pred cccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcch--------------------------------
Confidence 12345668999999999998876666666 9999999754 110000
Q ss_pred CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEec
Q 013274 260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDV 338 (446)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~ 338 (446)
....+...|++++|||-. ..++++..||.|.+||+
T Consensus 436 --------------------------------------------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 436 --------------------------------------------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred --------------------------------------------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 011223458999999976 46788899999999998
Q ss_pred CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCC
Q 013274 339 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 418 (446)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~ 418 (446)
...... ++ .+..-+....+++.|+++|+.|+.|...|
T Consensus 472 l~~~~~-------------Pv------------------------------~s~~~~~~~l~~~~~s~~g~~lavGd~~G 508 (555)
T KOG1587|consen 472 LQDDEE-------------PV------------------------------LSQKVCSPALTRVRWSPNGKLLAVGDANG 508 (555)
T ss_pred hccccC-------------Cc------------------------------ccccccccccceeecCCCCcEEEEecCCC
Confidence 753211 00 00011234567888999999999999999
Q ss_pred cEEEeCCCCC
Q 013274 419 QILVWCPSRH 428 (446)
Q Consensus 419 ~v~vW~~~~~ 428 (446)
++.+|+++..
T Consensus 509 ~~~~~~l~~~ 518 (555)
T KOG1587|consen 509 TTHILKLSES 518 (555)
T ss_pred cEEEEEcCch
Confidence 9999998643
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=4.6e-14 Score=122.33 Aligned_cols=166 Identities=20% Similarity=0.327 Sum_probs=124.0
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee-cCCcEE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-VDTGLF 119 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~-~~~~~l 119 (446)
.|-|.|+||-|-| ++..|++-. |..|.+|+++..... +..+......+|....++..|+| .++.++
T Consensus 121 eavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~-----------vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 121 EAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKI-----------VAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred HHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcch-----------heeecccccccccceecccccCCCCccceE
Confidence 4557899999987 566677664 899999999865432 11111111234666778889988 678888
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEec-CC-ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeEEE
Q 013274 120 VTGSYDHYVKVWDTNCTRVVMNFKM-PG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTV 196 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~sv 196 (446)
++.+ |++++.||+.+......+.- ++ .+..+.|.|. ...+|++++.|+.|++||.+.- .+++.+.+|..-|++|
T Consensus 188 ~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn--kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 188 ATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPN--KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred EEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCC--ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 8776 68999999998776554432 11 2445555553 3568999999999999999865 5789999999999999
Q ss_pred EEecCCCeEEEEeeCCCcEEEEEccC
Q 013274 197 EWSTSSEWILVTGGCDGAIRFWDIRR 222 (446)
Q Consensus 197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~ 222 (446)
.|+|....++.||+.|..|.+|....
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccc
Confidence 99998777788999999999997653
No 184
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=7.2e-14 Score=128.29 Aligned_cols=159 Identities=13% Similarity=0.159 Sum_probs=119.3
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc-ccEeEEEEeecCCcEEEEE
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGLFVTG 122 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~~~~~~~~~~~l~s~ 122 (446)
-+|.+.+|.|.+...++++|.-.-...||+.+.... +..+. .|+. ..+..-.++ +++++++..
T Consensus 258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-------k~~~~--------~g~e~~~~e~FeVS-hd~~fia~~ 321 (514)
T KOG2055|consen 258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-------KLKPP--------YGVEEKSMERFEVS-HDSNFIAIA 321 (514)
T ss_pred CccceeeecCCCceEEEecccceEEEEeeccccccc-------cccCC--------CCcccchhheeEec-CCCCeEEEc
Confidence 578889998754448999999999999999875432 11111 1222 112222233 478899999
Q ss_pred eCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC-CeEEEEEecC
Q 013274 123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD-GIMTVEWSTS 201 (446)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~-~v~sv~~s~~ 201 (446)
|..|.|.+-...+++.+..+.+.|.+..+.|+.++ ..|.+.+.+|.|.+||++...+++++....+ .-++++.+++
T Consensus 322 G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds---k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~n 398 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS---KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLN 398 (514)
T ss_pred ccCceEEeehhhhhhhhheeeeccEEeeEEEecCC---cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCC
Confidence 99999999999999999999999999888888643 3455556688999999999988888764322 1256777788
Q ss_pred CCeEEEEeeCCCcEEEEEccC
Q 013274 202 SEWILVTGGCDGAIRFWDIRR 222 (446)
Q Consensus 202 ~~~~l~S~s~Dg~I~iWd~~~ 222 (446)
+.| ||+||..|.|.|||..+
T Consensus 399 g~y-lA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 399 GSY-LATGSDSGIVNIYDGNS 418 (514)
T ss_pred Cce-EEeccCcceEEEeccch
Confidence 886 79999999999999654
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.7e-14 Score=131.30 Aligned_cols=198 Identities=22% Similarity=0.277 Sum_probs=137.2
Q ss_pred eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCC
Q 013274 47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDH 126 (446)
Q Consensus 47 ~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~ 126 (446)
.+++|+. +|..|++|+.||++|||+....... -.+..|.++|.++.|+| |++.|++-+.|
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~-----------------l~e~~~~~eV~DL~FS~-dgk~lasig~d- 207 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTI-----------------LEEIAHHAEVKDLDFSP-DGKFLASIGAD- 207 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhh-----------------hhhHhhcCccccceeCC-CCcEEEEecCC-
Confidence 6788986 5789999999999999995433211 12346888999999987 89999999999
Q ss_pred eEEEEECCCCeeeEEEecCCceEEe---eeccCCCCce--EEEEeeCCCcEEEEeCCCCce-----eeeeeCCCCCeEEE
Q 013274 127 YVKVWDTNCTRVVMNFKMPGKVYRT---AMSPLAASHM--LIAAGTEDVQVRLCDIASGAI-----SQTLSGHRDGIMTV 196 (446)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~lasgs~d~~v~vwd~~~~~~-----~~~l~~h~~~v~sv 196 (446)
..+||+++++..+......+.-+.. .|..+..... +++.-..-+.|..||+..... ......-...|+++
T Consensus 208 ~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl 287 (398)
T KOG0771|consen 208 SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSL 287 (398)
T ss_pred ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeE
Confidence 9999999998655444322222222 2222221112 233333455677776643211 11111223568999
Q ss_pred EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV 276 (446)
Q Consensus 197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (446)
+.+++|+. ++-|+.||.|-|++..+.++++..
T Consensus 288 ~VS~dGkf-~AlGT~dGsVai~~~~~lq~~~~v----------------------------------------------- 319 (398)
T KOG0771|consen 288 AVSDDGKF-LALGTMDGSVAIYDAKSLQRLQYV----------------------------------------------- 319 (398)
T ss_pred EEcCCCcE-EEEeccCCcEEEEEeceeeeeEee-----------------------------------------------
Confidence 99999985 788999999999998654332211
Q ss_pred eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274 277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~ 340 (446)
..+|.+.|+.|.|+||.+++++-+.|.++++.-+.-
T Consensus 320 ----------------------------k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 320 ----------------------------KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ----------------------------hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 146888999999999999999999999999987653
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.2e-14 Score=136.55 Aligned_cols=211 Identities=20% Similarity=0.286 Sum_probs=137.3
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+.+|.|+|-|+++.+ ++..+.||+-||+|+.|++....+... +..+. +-..+..||...|+.+++++ ..++
T Consensus 340 fraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~d-----s~dp~--vl~~~l~Ghtdavw~l~~s~-~~~~ 410 (577)
T KOG0642|consen 340 FRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDD-----SYDPS--VLSGTLLGHTDAVWLLALSS-TKDR 410 (577)
T ss_pred EecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCccc-----ccCcc--hhccceeccccceeeeeecc-cccc
Confidence 569999999999964 788999999999999998753222110 11111 11234579999999988887 5678
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEEEEeC---CCCceeeeeeC----
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI---ASGAISQTLSG---- 188 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~---~~~~~~~~l~~---- 188 (446)
|++||.|||++.|+.....+ .+|... +...++.+....+. ..++ +.....+++ +.......+..
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a-~~~~----s~~~~~~~~~~~ev~s~~~~~~s~~~~ 484 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPA-HSLA----SFRFGYTSIDDMEVVSDLLIFESSASP 484 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhH-hhhh----hcccccccchhhhhhhheeeccccCCC
Confidence 99999999999999865554 233221 11222333221111 1111 223333333 33322222221
Q ss_pred ---CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCC
Q 013274 189 ---HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRA 265 (446)
Q Consensus 189 ---h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (446)
-...+.-|...|... +.+++..|+.|+++|..+++.+.
T Consensus 485 ~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~-------------------------------------- 525 (577)
T KOG0642|consen 485 GPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILH-------------------------------------- 525 (577)
T ss_pred cccccCccceEEecCCCC-eeEecccCCceecccccccccch--------------------------------------
Confidence 113456677777776 56799999999999977643210
Q ss_pred ccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274 266 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 341 (446)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~ 341 (446)
...+|...++++++.|+|-+|++|+.|+++++|.+...
T Consensus 526 --------------------------------------s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 526 --------------------------------------SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred --------------------------------------heeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 01356777999999999999999999999999988654
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=9.3e-15 Score=142.76 Aligned_cols=285 Identities=18% Similarity=0.283 Sum_probs=187.4
Q ss_pred CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
.+|-..|+|+.|+- .|.++++||.|..|+||..++..+. ....||.+.++.++.+. +.-.+
T Consensus 187 lgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~l-----------------As~rGhs~ditdlavs~-~n~~i 247 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCL-----------------ASCRGHSGDITDLAVSS-NNTMI 247 (1113)
T ss_pred Hhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhh-----------------ccCCCCccccchhccch-hhhhh
Confidence 47999999999984 5899999999999999997665432 12358999999988876 56688
Q ss_pred EEEeCCCeEEEEECCCCeeeEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee---ee-CCCCCeE
Q 013274 120 VTGSYDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT---LS-GHRDGIM 194 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~---l~-~h~~~v~ 194 (446)
|++|.|+-|++|.+.++.++..+ .++|.+..++|+|.. +.+.||++++||.+-...+.. +. .-.+-+.
T Consensus 248 aaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 248 AAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred hhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCccccccee
Confidence 99999999999999988876433 467888999999853 668899999999872111111 11 1123455
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN 274 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (446)
++-|...+.. +.|++.|+.-+.|.+....+
T Consensus 321 s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l~~------------------------------------------------- 350 (1113)
T KOG0644|consen 321 SILFENNGDR-FLTGSRDGEARNHEFEQLAW------------------------------------------------- 350 (1113)
T ss_pred eeeccccccc-cccccCCcccccchhhHhhh-------------------------------------------------
Confidence 6666555543 67899988888886532110
Q ss_pred ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC-CCEEEEeecCCcEEEEecCcCceeeeeeeEEEe
Q 013274 275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL 353 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~ 353 (446)
|...+.-+.++.| ..+.+++-.+-.+.+|++.++... .. +..
T Consensus 351 ---------------------------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~-H~---l~g 393 (1113)
T KOG0644|consen 351 ---------------------------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL-HN---LMG 393 (1113)
T ss_pred ---------------------------------hccceEEEeccccccccceeeeeeeEeeeeecccchhh-hh---hcc
Confidence 0001111112222 256777888889999999876321 00 011
Q ss_pred ecCCCeEEEEcCC-CcEEEEeC-CCceEEEEeecCceEEEe-cccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC--
Q 013274 354 QTSKPIQLATTQD-PAVVFVPC-MTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH-- 428 (446)
Q Consensus 354 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~d~~~~~~~~~l-~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~-- 428 (446)
+......+-+.|- +.+.++++ .+..-+||+|.|...+.+ .+| +.+.+.+||+||+.++-...-|.+.|..-..+
T Consensus 394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 1122233334443 33333433 357889999999876544 454 56788899999999886666678888755422
Q ss_pred ----CCCCcCCCcc
Q 013274 429 ----ISDGVDAGPM 438 (446)
Q Consensus 429 ----~~~~~~~~~~ 438 (446)
+.++|-.|+|
T Consensus 473 ~k~ak~dqffl~dy 486 (1113)
T KOG0644|consen 473 QKKAKYDQFFLGDY 486 (1113)
T ss_pred ccccccceEeecCc
Confidence 3445555544
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2.8e-13 Score=133.33 Aligned_cols=235 Identities=17% Similarity=0.193 Sum_probs=154.2
Q ss_pred CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC---CeEEEEECCCCeeeEE
Q 013274 65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMN 141 (446)
Q Consensus 65 Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D---~~i~iWd~~~~~~~~~ 141 (446)
+..|.+||...... +....|...+.+..|+| ++++|+.++.+ ..|.+||+.+++....
T Consensus 183 ~~~i~i~d~dg~~~------------------~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l 243 (429)
T PRK01742 183 PYEVRVADYDGFNQ------------------FIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVV 243 (429)
T ss_pred eEEEEEECCCCCCc------------------eEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEE
Confidence 57899999753211 11134566677888887 78888887754 3699999988764332
Q ss_pred EecCCceEEeeeccCCCCceEEEE-eeCCCcEEE--EeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEE
Q 013274 142 FKMPGKVYRTAMSPLAASHMLIAA-GTEDVQVRL--CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218 (446)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~las-gs~d~~v~v--wd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iW 218 (446)
....+......++|++ ..|+. .+.++.+.| ||++++. ...+..+...+.+..|+|+++++++++..+|..+||
T Consensus 244 ~~~~g~~~~~~wSPDG---~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 244 ASFRGHNGAPAFSPDG---SRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred ecCCCccCceeECCCC---CEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEE
Confidence 2334444556777753 34444 456776554 5666665 455667777888999999999766666678899999
Q ss_pred EccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCc
Q 013274 219 DIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM 298 (446)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (446)
++........
T Consensus 320 ~~~~~~~~~~---------------------------------------------------------------------- 329 (429)
T PRK01742 320 RMSASGGGAS---------------------------------------------------------------------- 329 (429)
T ss_pred EEECCCCCeE----------------------------------------------------------------------
Confidence 8753210000
Q ss_pred ccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCc
Q 013274 299 LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTA 377 (446)
Q Consensus 299 ~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 377 (446)
...+.+ ....|+|||++|+..+.++ +.+||+.+++..... .. .....+.++|++..++... ...
T Consensus 330 ------~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~~-----~~~~~~~~sPdG~~i~~~s~~g~ 394 (429)
T PRK01742 330 ------LVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-ST-----FLDESPSISPNGIMIIYSSTQGL 394 (429)
T ss_pred ------EecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-CC-----CCCCCceECCCCCEEEEEEcCCC
Confidence 000111 2356899999998887765 566999887532211 11 1112356899988777654 456
Q ss_pred eEEEEee--cCceEEEecccccceEEEEEcCC
Q 013274 378 VKAFDIW--SGKTCLTFRGHYEYVNCCCFSSQ 407 (446)
Q Consensus 378 ~~~~d~~--~~~~~~~l~gH~~~v~~~~fSpd 407 (446)
..+|++. +++....+.+|.+.+...+|||-
T Consensus 395 ~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 395 GKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 7788875 57888899999999999999984
No 189
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.6e-13 Score=119.13 Aligned_cols=197 Identities=16% Similarity=0.154 Sum_probs=129.7
Q ss_pred eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeE
Q 013274 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR 227 (446)
Q Consensus 148 ~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~ 227 (446)
..++.|++. +.+||+|+.||.|.|||+.|....+.+.+|.-+|++++||++|+. |+|+|.|..|++||+..+.+++
T Consensus 26 a~~~~Fs~~---G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~-LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRW---GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRK-LLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEeccC---cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCE-eeeecCCceeEEEeccCCCcee
Confidence 345556554 458999999999999999999999999999999999999999985 7899999999999999887765
Q ss_pred EeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccc
Q 013274 228 VLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATA 307 (446)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (446)
.+.-
T Consensus 102 rirf---------------------------------------------------------------------------- 105 (405)
T KOG1273|consen 102 RIRF---------------------------------------------------------------------------- 105 (405)
T ss_pred EEEc----------------------------------------------------------------------------
Confidence 5421
Q ss_pred cccCeEEEEEccCC--CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEee
Q 013274 308 HYGAVTGLKVTEDG--MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIW 384 (446)
Q Consensus 308 h~~~v~~l~fs~dg--~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~ 384 (446)
.++|....|+|-. +.+++ =.+..-.+-++..++...............+....+.+.+.+++++.. +.+.+++..
T Consensus 106 -~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 106 -DSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -cCccceeeeccccCCeEEEE-EecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 1122222333211 11111 112222222222111110000000000001111235566777777655 567788888
Q ss_pred cCceEEEecccc-cceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 385 SGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 385 ~~~~~~~l~gH~-~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
+-+++..++--+ ..|-.+.|+..|+.|+.-+.|+.||+++..
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 888877776555 778899999999999999999999999876
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=4e-14 Score=132.46 Aligned_cols=125 Identities=22% Similarity=0.416 Sum_probs=104.6
Q ss_pred ccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe--cCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274 97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRL 174 (446)
Q Consensus 97 ~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v 174 (446)
+++.||++.|.++.|.. +|.+|+|||+|-.+.|||.-..+++..+. +...++++.|.|... ..++++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn-nriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN-NRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC-CeEEEeccCcceEEE
Confidence 45679999999999987 89999999999999999988777766554 345688999998764 468899999999999
Q ss_pred EeCCCC----------ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274 175 CDIASG----------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (446)
Q Consensus 175 wd~~~~----------~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~ 223 (446)
+|+... .....+.-|...|.-++..|+++.++.++++||+||-+|+|..
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 999742 2233455688999999999999888999999999999999853
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=6.7e-14 Score=124.04 Aligned_cols=151 Identities=21% Similarity=0.304 Sum_probs=110.8
Q ss_pred eEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecC-CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCC
Q 013274 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS-SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR 239 (446)
Q Consensus 161 ~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~-~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 239 (446)
..+|++.+++.|++||..++..+..+++|.+.+..+.|... +...+.||+.||+||+||+|.......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~--------- 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS--------- 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee---------
Confidence 46889999999999999999999999999999999999764 45567899999999999999643211111
Q ss_pred CcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccc-cCeEEEEEc
Q 013274 240 PPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY-GAVTGLKVT 318 (446)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~fs 318 (446)
..+|. .+.++++..
T Consensus 112 -----------------------------------------------------------------~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 112 -----------------------------------------------------------------WTQQSGTPFICLDLN 126 (376)
T ss_pred -----------------------------------------------------------------ccCCCCCcceEeecc
Confidence 01111 234556666
Q ss_pred cCCCEEEEee----cCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecc
Q 013274 319 EDGMYLLSAG----SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG 394 (446)
Q Consensus 319 ~dg~~l~sgs----~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~g 394 (446)
..+..++.|. .|-.|.+||++..++.+. .-...
T Consensus 127 ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~-------------------------------------------~~~eS 163 (376)
T KOG1188|consen 127 CKKNIIACGTELTRSDASVVLWDVRSEQQLLR-------------------------------------------QLNES 163 (376)
T ss_pred CcCCeEEeccccccCceEEEEEEeccccchhh-------------------------------------------hhhhh
Confidence 5666666653 355677777765432110 12246
Q ss_pred cccceEEEEEcCC-CCEEEEeeCCCcEEEeCCCCC
Q 013274 395 HYEYVNCCCFSSQ-DQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 395 H~~~v~~~~fSpd-~~~lvtgs~D~~v~vW~~~~~ 428 (446)
|.+.|+++.|+|. ..+|+|||.||.|.|+|...+
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 9999999999996 578999999999999988744
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1e-12 Score=131.85 Aligned_cols=258 Identities=17% Similarity=0.229 Sum_probs=160.0
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee-cCCcEEEEE
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-VDTGLFVTG 122 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~-~~~~~l~s~ 122 (446)
+.-..+.|+|- ...++++..-..|+|||-+.++.+.. . .........|+.+.+.. .|..++++|
T Consensus 1065 ~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~~------F--------~n~~~~~t~Vs~l~liNe~D~aLlLta 1129 (1387)
T KOG1517|consen 1065 QPPKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLNG------F--------DNGAFPDTRVSDLELINEQDDALLLTA 1129 (1387)
T ss_pred CCCceeeecCC-CceeEEcCCcceEEEEecccCceecc------c--------cCCCCCCCccceeeeecccchhheeee
Confidence 34456778764 56788887778899999987764321 0 00011234566666643 345689999
Q ss_pred eCCCeEEEEECC-----CCeeeEEEe-cCCc----eE-EeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee-CCC
Q 013274 123 SYDHYVKVWDTN-----CTRVVMNFK-MPGK----VY-RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHR 190 (446)
Q Consensus 123 s~D~~i~iWd~~-----~~~~~~~~~-~~~~----~~-~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~-~h~ 190 (446)
+.||.||||+-- ..+.+..+. +.+. .. .+.+.-.-..+.++++| .-..|+|||+........+. +-.
T Consensus 1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCC
Confidence 999999999732 223333322 1111 00 01111111223445554 46789999999887776664 455
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS 270 (446)
Q Consensus 191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (446)
..|++++-+.....+++.|-.||.||+||.|....-
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-------------------------------------------- 1244 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-------------------------------------------- 1244 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCcc--------------------------------------------
Confidence 667777655444457899999999999998753100
Q ss_pred cCCCceeecccceeecCCccccccCCCcccccccccccccC--eEEEEEccCCC-EEEEeecCCcEEEEecCcCceeeee
Q 013274 271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA--VTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVN 347 (446)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~fs~dg~-~l~sgs~D~~i~lWd~~~~~~~~~~ 347 (446)
+.......|... |..+.+-+.|- .|+||+.||.|++||++.... ..
T Consensus 1245 -----------------------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~--e~ 1293 (1387)
T KOG1517|consen 1245 -----------------------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK--ET 1293 (1387)
T ss_pred -----------------------------ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc--cc
Confidence 000011234444 88888888775 499999999999999986310 00
Q ss_pred eeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 348 FETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
+... +.-|+. .+.++++..+++...+||||. +.|+||+..+
T Consensus 1294 ~~~i--------------------------v~~~~y------------Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1294 FLTI--------------------------VAHWEY------------GSALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred ccee--------------------------eecccc------------CccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence 1000 001111 014789999999999999999 9999999987
Q ss_pred CCCC
Q 013274 428 HISD 431 (446)
Q Consensus 428 ~~~~ 431 (446)
..+.
T Consensus 1335 ~~l~ 1338 (1387)
T KOG1517|consen 1335 EQLN 1338 (1387)
T ss_pred hhhc
Confidence 6554
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.54 E-value=2.2e-13 Score=129.49 Aligned_cols=145 Identities=21% Similarity=0.385 Sum_probs=114.1
Q ss_pred eCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe-----
Q 013274 63 ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR----- 137 (446)
Q Consensus 63 s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~----- 137 (446)
|.-|.|-||+++..-... .+.+.+. -....|+.+.|.|.|..+||.+++|+.|++|.+..+.
T Consensus 600 g~gG~iai~el~~PGrLP-Dgv~p~l------------~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLP-DGVMPGL------------FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred CCCceEEEEEcCCCCCCC-ccccccc------------ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 567899999997542211 1222111 1234588889999999999999999999999986432
Q ss_pred --eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCc
Q 013274 138 --VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA 214 (446)
Q Consensus 138 --~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~ 214 (446)
+...+. +..+++++.|+|+.. .+|++++.|-+|++||+.+++....|.||++.|..++|||+|+. ++|.+.||+
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAa--dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~-~AtVcKDg~ 743 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAA--DVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRR-IATVCKDGT 743 (1012)
T ss_pred CCcceeeecccceEEEEEecchhh--hHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcc-eeeeecCce
Confidence 222222 235688999999865 47899999999999999999999999999999999999999985 799999999
Q ss_pred EEEEEccCC
Q 013274 215 IRFWDIRRA 223 (446)
Q Consensus 215 I~iWd~~~~ 223 (446)
|++|..++.
T Consensus 744 ~rVy~Prs~ 752 (1012)
T KOG1445|consen 744 LRVYEPRSR 752 (1012)
T ss_pred EEEeCCCCC
Confidence 999998764
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.53 E-value=1.4e-12 Score=132.71 Aligned_cols=252 Identities=21% Similarity=0.213 Sum_probs=156.4
Q ss_pred cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC-------CeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCC
Q 013274 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-------TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTED 169 (446)
Q Consensus 98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d 169 (446)
+.+.|+..|...+.++..+.+|+|||.||+||+|++.. .+...++. ..+.+..+.+.+. ...+|.|+.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~---~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN---GDQFAVSTKD 1119 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC---CCeEEEEcCC
Confidence 45678889999899888889999999999999999752 12233444 3445666666653 3578999999
Q ss_pred CcEEEEeCCCC--c-----eeeeeeCC-CCC-eEEEEEecCCCe-EEEEeeCCCcEEEEEccCCceeEEeecccccccCC
Q 013274 170 VQVRLCDIASG--A-----ISQTLSGH-RDG-IMTVEWSTSSEW-ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR 239 (446)
Q Consensus 170 ~~v~vwd~~~~--~-----~~~~l~~h-~~~-v~sv~~s~~~~~-~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 239 (446)
|.|++.+++-. . ..+....+ .+. |..-+|....+. .++.+..-+.|..||+|.....-.++
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk--------- 1190 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK--------- 1190 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh---------
Confidence 99999998752 1 11111112 222 333334333332 56677777889999988632110000
Q ss_pred CcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc
Q 013274 240 PPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE 319 (446)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~ 319 (446)
.....|.|++++.+|
T Consensus 1191 -----------------------------------------------------------------~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1191 -----------------------------------------------------------------NQLRHGLVTSIVIDP 1205 (1431)
T ss_pred -----------------------------------------------------------------cCccccceeEEEecC
Confidence 011246799999999
Q ss_pred CCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCC---cEEEEeC---CCceEEEEeecCceEEEec
Q 013274 320 DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP---AVVFVPC---MTAVKAFDIWSGKTCLTFR 393 (446)
Q Consensus 320 dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~d~~~~~~~~~l~ 393 (446)
.+.+++.|+..|.+-+||++-+.... ............+...+-. ...++++ .+.+..|++.+|....+|.
T Consensus 1206 ~~~WlviGts~G~l~lWDLRF~~~i~---sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPIL---SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred CceEEEEecCCceEEEEEeecCceee---cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEE
Confidence 99999999999999999997542110 0000001122223333221 2333332 3578899998886555443
Q ss_pred cc-------------------ccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 394 GH-------------------YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 394 gH-------------------~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
.- .-...-+++-.-+..+.||+.|..||.||+..+.
T Consensus 1283 ~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1283 ASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 22 1112233343446788899999999999998775
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=9.5e-13 Score=120.00 Aligned_cols=199 Identities=18% Similarity=0.275 Sum_probs=136.0
Q ss_pred EEEeecCCcEEEEEeCCCeEEEEECCCCeeeEE-EecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee
Q 013274 109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (446)
Q Consensus 109 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~ 187 (446)
+++. .++..+++++.||++|+|+..+...+.. ..+.+.+..+.|+++ ...|++-+.| ..+||+++++..+....
T Consensus 150 vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d---gk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 150 VAFN-GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD---GKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred EEEc-CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC---CcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 3444 4788999999999999999665554433 345667888888875 4578888888 99999999997665554
Q ss_pred C--CCCCeEEEEEecCC---Ce-EEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCc
Q 013274 188 G--HRDGIMTVEWSTSS---EW-ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSV 261 (446)
Q Consensus 188 ~--h~~~v~sv~~s~~~---~~-~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (446)
. -......+.|+.++ .. +++.-..-+.|+.||+...+--..+
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l-------------------------------- 272 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL-------------------------------- 272 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc--------------------------------
Confidence 2 23344566777665 22 2223333456777765421100000
Q ss_pred CCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274 262 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 341 (446)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~ 341 (446)
... + .......|++|+.|+||++++-|+.||.|-+++..+-
T Consensus 273 ---------------------------~~~-----------~-~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l 313 (398)
T KOG0771|consen 273 ---------------------------RLR-----------K-KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL 313 (398)
T ss_pred ---------------------------chh-----------h-hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee
Confidence 000 0 0011234999999999999999999999999987753
Q ss_pred ceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEE
Q 013274 342 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL 421 (446)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~ 421 (446)
+. +. ..-+.|..-|+.+.|+||.+++++.|.|..+.
T Consensus 314 q~----~~----------------------------------------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 314 QR----LQ----------------------------------------YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred ee----eE----------------------------------------eehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence 21 00 11246889999999999999999999999999
Q ss_pred EeCCCC
Q 013274 422 VWCPSR 427 (446)
Q Consensus 422 vW~~~~ 427 (446)
|-.+..
T Consensus 350 v~~l~v 355 (398)
T KOG0771|consen 350 VTKLAV 355 (398)
T ss_pred EEEEee
Confidence 987764
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=4.6e-12 Score=124.66 Aligned_cols=210 Identities=15% Similarity=0.080 Sum_probs=134.1
Q ss_pred CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC---CcEEEEeCCCCce--eeeeeCCCCCeEEEEEe
Q 013274 125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---VQVRLCDIASGAI--SQTLSGHRDGIMTVEWS 199 (446)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d---~~v~vwd~~~~~~--~~~l~~h~~~v~sv~~s 199 (446)
+.+|.+||.+.............+....++|++ ..|+..+.+ ..|++||++++.. +..+.+| ..+++|+
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG---~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDG---SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCC---CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeEC
Confidence 579999998765432222233446677788754 355555432 4799999998753 3334444 3468999
Q ss_pred cCCCeEEEEeeCCCcEEEEEcc--CCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274 200 TSSEWILVTGGCDGAIRFWDIR--RAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277 (446)
Q Consensus 200 ~~~~~~l~S~s~Dg~I~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (446)
|+++.++++.+.+|.+.||.+. ++.. ..
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~------------------------------------------------- 286 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTP-SQ------------------------------------------------- 286 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCe-Ee-------------------------------------------------
Confidence 9999765555678887777542 2210 00
Q ss_pred ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee-cCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETVRLQTS 356 (446)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs-~D~~i~lWd~~~~~~~~~~~~~~~~~~~ 356 (446)
...+...+....|+|||+.|+..+ .++..+||++.........+ ...
T Consensus 287 ---------------------------lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-----~~~ 334 (429)
T PRK01742 287 ---------------------------LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-----GGR 334 (429)
T ss_pred ---------------------------eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-----cCC
Confidence 011223456788999999776554 57888999875421111111 111
Q ss_pred CCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274 357 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
. ....++|++..++..+...+..||+.+++.......+ ....++|||||++|+.++.++.+.+|.+
T Consensus 335 ~-~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 335 G-YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred C-CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 1 2356788988887766677777999888754332332 2357889999999999999998888754
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.48 E-value=9.6e-11 Score=111.57 Aligned_cols=273 Identities=12% Similarity=0.162 Sum_probs=156.3
Q ss_pred CccceeEEEeecCCCCEEEEe-eCCCcEEEEEccc-CcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 42 HKGSINSLQVDLTEERYLLSG-ASDSSVAVYDVQR-ATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 42 H~~~v~~l~~s~~~~~~l~s~-s~Dg~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
+.+....|.++| ++++|..+ ..++.|.+|+++. +.. . ........+ ....+.+.| +++++
T Consensus 33 ~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l-------~------~~~~~~~~~---~p~~i~~~~-~g~~l 94 (330)
T PRK11028 33 VPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGAL-------T------FAAESPLPG---SPTHISTDH-QGRFL 94 (330)
T ss_pred cCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCce-------E------EeeeecCCC---CceEEEECC-CCCEE
Confidence 345677899997 56766544 5688999999862 211 0 000000111 233455665 77777
Q ss_pred EEEeC-CCeEEEEECCC-Ce---eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee-------eee
Q 013274 120 VTGSY-DHYVKVWDTNC-TR---VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-------TLS 187 (446)
Q Consensus 120 ~s~s~-D~~i~iWd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~-------~l~ 187 (446)
+++++ ++.|.+|+++. +. .+..+......+.+.+++.. ..++++...++.|.+||+++...+. .+.
T Consensus 95 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g--~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~ 172 (330)
T PRK11028 95 FSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN--RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV 172 (330)
T ss_pred EEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCC--CEEEEeeCCCCEEEEEEECCCCcccccCCCceecC
Confidence 77664 89999999963 32 22222222234556666642 3455666778999999998632221 111
Q ss_pred CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC-ceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274 188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP 266 (446)
Q Consensus 188 ~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (446)
. ......++|+|++++++++...+++|.+||+... +.+..+.. +..
T Consensus 173 ~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~----~~~---------------------------- 219 (330)
T PRK11028 173 E-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT----LDM---------------------------- 219 (330)
T ss_pred C-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE----Eec----------------------------
Confidence 1 2345789999999976555555899999998632 11111100 000
Q ss_pred cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee-cCCcEEEEecCcCceee
Q 013274 267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTL 345 (446)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs-~D~~i~lWd~~~~~~~~ 345 (446)
. +. ...+......+.|+|+|++|.++. .+++|.+|++.......
T Consensus 220 -----------------~-----------p~-------~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~ 264 (330)
T PRK11028 220 -----------------M-----------PA-------DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL 264 (330)
T ss_pred -----------------C-----------CC-------cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence 0 00 000111234688999999888774 47899999996532211
Q ss_pred eeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEee--cCce--EEEecccccceEEEEE
Q 013274 346 VNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIW--SGKT--CLTFRGHYEYVNCCCF 404 (446)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~--~~~~--~~~l~gH~~~v~~~~f 404 (446)
....... ....+..+.+++++..++++. .+.+.+|++. ++.+ ...+.. .....|++|
T Consensus 265 ~~~~~~~-~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~~~~ 327 (330)
T PRK11028 265 SFEGHQP-TETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV-GQGPMWVSV 327 (330)
T ss_pred EEeEEEe-ccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-CCCceEEEE
Confidence 1111111 112455688999999888764 3578999874 3333 223332 334566665
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=4.2e-11 Score=118.59 Aligned_cols=294 Identities=17% Similarity=0.141 Sum_probs=192.2
Q ss_pred EeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC--cEEEEEeCCCe
Q 013274 50 QVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT--GLFVTGSYDHY 127 (446)
Q Consensus 50 ~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~--~~l~s~s~D~~ 127 (446)
.|++ |+++++-. .+..|+||-..++.+.. .+.+|...+.++.+.+... .++.+++.||+
T Consensus 23 vfSn-D~k~l~~~-~~~~V~VyS~~Tg~~i~-----------------~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~ 83 (792)
T KOG1963|consen 23 VFSN-DAKFLFLC-TGNFVKVYSTATGECIT-----------------SLEDHTAPLTSVIVLPSSENANYLIVCSLDGT 83 (792)
T ss_pred cccc-CCcEEEEe-eCCEEEEEecchHhhhh-----------------hcccccCccceeeecCCCccceEEEEEecCcc
Confidence 4664 67766555 55679999998876521 2357888888888876555 57789999999
Q ss_pred EEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee-CC------------CcEEEEeCCCC--ceeeeeeCCCCC
Q 013274 128 VKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT-ED------------VQVRLCDIASG--AISQTLSGHRDG 192 (446)
Q Consensus 128 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs-~d------------~~v~vwd~~~~--~~~~~l~~h~~~ 192 (446)
|++||-..+.+++++....+++...+.+.......++..+ .| ++++-+.+.+- .....+..|..
T Consensus 84 I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~- 162 (792)
T KOG1963|consen 84 IRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE- 162 (792)
T ss_pred EEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-
Confidence 9999999999999998877776665543221111222111 11 11111121111 11112233333
Q ss_pred eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272 (446)
Q Consensus 193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (446)
-.+|.+++.+.. .....+..+.+|+..+.. +..
T Consensus 163 ~~~I~~~~~ge~--~~i~~~~~~~~~~v~~~~--~~~------------------------------------------- 195 (792)
T KOG1963|consen 163 PKSIVDNNSGEF--KGIVHMCKIHIYFVPKHT--KHT------------------------------------------- 195 (792)
T ss_pred CccEEEcCCceE--EEEEEeeeEEEEEecccc--eee-------------------------------------------
Confidence 356666766653 334445567777754321 000
Q ss_pred CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc-CceeeeeeeEE
Q 013274 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES-GRNTLVNFETV 351 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~-~~~~~~~~~~~ 351 (446)
........|.-.+++.++||++.++++|..||+|.+|.-.. .... .....+
T Consensus 196 ---------------------------~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~-~t~t~l 247 (792)
T KOG1963|consen 196 ---------------------------SSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS-ETCTLL 247 (792)
T ss_pred ---------------------------ccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc-ccceEE
Confidence 00011234666689999999999999999999999995332 1111 112334
Q ss_pred EeecCCCeEEEEcCCCcEEEEeCCCc-eEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274 352 RLQTSKPIQLATTQDPAVVFVPCMTA-VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 430 (446)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~ 430 (446)
..+......+++++++..+++++... ...|.+.+++ ..-|+.-.++|..+.+|||+...+..-.|+.|.+-....=..
T Consensus 248 HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 248 HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred EecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 55566778899999999999987754 5789999988 566777889999999999999999999999999987754444
Q ss_pred CCcCCCccC
Q 013274 431 DGVDAGPMQ 439 (446)
Q Consensus 431 ~~~~~~~~~ 439 (446)
....+|...
T Consensus 327 k~tIsgi~~ 335 (792)
T KOG1963|consen 327 KSTISGIKP 335 (792)
T ss_pred hhhccCccC
Confidence 445555443
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.46 E-value=3.8e-12 Score=119.13 Aligned_cols=270 Identities=18% Similarity=0.207 Sum_probs=158.2
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEE-EcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVY-DVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lW-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
.|+..|-++.|+.. .. +...++|..+.+| |+.+.... +....+-++ ...-|.++-..- -....+.|
T Consensus 12 r~~e~vc~v~w~~~-ee-i~~~~dDh~~~~~~~~~~~s~~-----~~~~p~df~----pt~~h~~~rs~~--~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSN-EE-IYFVSDDHQIFKWSDVSRDSVE-----VAKLPDDFV----PTDMHLGGRSSG--GGKGSDTL 78 (737)
T ss_pred ccceeEEeeccccc-ce-EEEeccCceEEEeecccchhhh-----hhhCCcccC----CccccccccccC--CCCCcceE
Confidence 67777878888753 34 5556666666666 44433210 000000000 000111100000 00124578
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 120 VTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
+.++.||.+.+-+-. +++.+... +.+.+.+-.+.+ ++.-|++++.||.|++|. ++|.+..++.....+|.|++|
T Consensus 79 ~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 79 LICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred EEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCC---CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 889999999887632 33333322 222233333444 444688889999999998 567666667677889999999
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (446)
.|+.+.++.+.+. .+.|=-+..+
T Consensus 154 ~p~S~~vl~c~g~--h~~IKpL~~n------------------------------------------------------- 176 (737)
T KOG1524|consen 154 APNSNSIVFCQGG--HISIKPLAAN------------------------------------------------------- 176 (737)
T ss_pred CCCCCceEEecCC--eEEEeecccc-------------------------------------------------------
Confidence 9998876655442 2222111100
Q ss_pred cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274 279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 358 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~ 358 (446)
...-++.+|.|-|.+++|++....++|||.|-+.++||... +..+ .. ..+.-..
T Consensus 177 ---------------------~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf---~S-~~~ey~I 230 (737)
T KOG1524|consen 177 ---------------------SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLF---TS-AAEEYAI 230 (737)
T ss_pred ---------------------cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccc---cC-Chhccce
Confidence 00113568999999999999999999999999999999653 2211 10 0111233
Q ss_pred eEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274 359 IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423 (446)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW 423 (446)
..+++.|+ ...++.+-...+ -=.-..+.|..++|||||..++.|...|.+.+=
T Consensus 231 TSva~npd-~~~~v~S~nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYNTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeccc-cceeeeeeeeee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 45677777 332222222222 112245789999999999999988887776653
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.46 E-value=1.1e-12 Score=125.56 Aligned_cols=170 Identities=17% Similarity=0.255 Sum_probs=118.2
Q ss_pred ccceeccccce--eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc
Q 013274 26 RLSTLQLSNYK--EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK 103 (446)
Q Consensus 26 ~l~~~~~~~~~--~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 103 (446)
++..++.+.+. ..+++|+..|++++++- +|+.++||+.|+.|.+|+.+-. ......|.
T Consensus 34 rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klE-------------------G~LkYSH~ 93 (1081)
T KOG1538|consen 34 RLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLE-------------------GILKYSHN 93 (1081)
T ss_pred EEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEeccccc-------------------ceeeeccC
Confidence 45445554433 34689999999999984 7889999999999999985421 11124789
Q ss_pred ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--
Q 013274 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-- 181 (446)
Q Consensus 104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-- 181 (446)
..|.|+.|.| -+.+|+||+.. ..-+|+.+...+. +......+.+.++.. ++.+++.|-.||+|.+-+-....
T Consensus 94 D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V~-K~kss~R~~~CsWtn---DGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 94 DAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSVS-KHKSSSRIICCSWTN---DGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred CeeeEeecCc-hHHHhhhcchh-hccccChhhhhHH-hhhhheeEEEeeecC---CCcEEEEeccCceEEeecCCCCcce
Confidence 9999999887 56789999875 5778987653332 233333455555554 56799999999999998653322
Q ss_pred eeeeeeCCCCCeEEEEEecCCC----eEEEEeeCCCcEEEEEcc
Q 013274 182 ISQTLSGHRDGIMTVEWSTSSE----WILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 182 ~~~~l~~h~~~v~sv~~s~~~~----~~l~S~s~Dg~I~iWd~~ 221 (446)
.+.+--|.+.+|++|+|+|... .+++...+..++-++.+.
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 2233346888999999999752 245666666666666654
No 201
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.46 E-value=1.1e-12 Score=118.95 Aligned_cols=157 Identities=24% Similarity=0.404 Sum_probs=118.1
Q ss_pred cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe-------eeEEEecCC---ceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-------VVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRL 174 (446)
Q Consensus 105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~~~lasgs~d~~v~v 174 (446)
+|.++.+.......+|||+.|..|++|-++... +...-.+.. .++.+-|.+ +..++|+|+.++.|.+
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p---~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP---DGELLASGGDGGEVFL 91 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC---CcCeeeecCCCceEEE
Confidence 566777776555599999999999999876432 222222233 345555554 5679999999999999
Q ss_pred EeCC--------C-----C---ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccC
Q 013274 175 CDIA--------S-----G---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR 238 (446)
Q Consensus 175 wd~~--------~-----~---~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 238 (446)
|-.. + . ...+.+.+|.+.+..++|+|++.. +++++.|+++++||+..+.....+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~~--------- 161 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF-LVSGSVDNSVRLWDVHAGQLLAIL--------- 161 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce-eeeeeccceEEEEEeccceeEeec---------
Confidence 9765 3 1 124567899999999999999875 799999999999999876533221
Q ss_pred CCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEc
Q 013274 239 RPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT 318 (446)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs 318 (446)
-+|...+..++|.
T Consensus 162 -------------------------------------------------------------------~dh~~yvqgvawD 174 (434)
T KOG1009|consen 162 -------------------------------------------------------------------DDHEHYVQGVAWD 174 (434)
T ss_pred -------------------------------------------------------------------cccccccceeecc
Confidence 2466678889999
Q ss_pred cCCCEEEEeecCCcEEEEecCcC
Q 013274 319 EDGMYLLSAGSDSRIRLWDVESG 341 (446)
Q Consensus 319 ~dg~~l~sgs~D~~i~lWd~~~~ 341 (446)
|-++|+++-+.|...+.+.+...
T Consensus 175 pl~qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 175 PLNQYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred hhhhhhhhhccCcccceeeeeee
Confidence 99999999999998888876653
No 202
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=3.7e-11 Score=113.55 Aligned_cols=288 Identities=18% Similarity=0.240 Sum_probs=179.0
Q ss_pred CCccceeEEEeecCCCCEEEEeeC-CCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc-ccEeEEEEeecCCcE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGAS-DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGL 118 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~-Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~~~~~~~~~~~ 118 (446)
.|...-+.|.++| ||+||++.|. --.|++||+..-.. .++ .|. ..|......+.|-.-
T Consensus 49 e~p~ast~ik~s~-DGqY~lAtG~YKP~ikvydlanLSL--------------KFE-----RhlDae~V~feiLsDD~SK 108 (703)
T KOG2321|consen 49 EMPTASTRIKVSP-DGQYLLATGTYKPQIKVYDLANLSL--------------KFE-----RHLDAEVVDFEILSDDYSK 108 (703)
T ss_pred CCccccceeEecC-CCcEEEEecccCCceEEEEccccee--------------eee-----ecccccceeEEEeccchhh
Confidence 5778889999997 6777665555 56899999875431 111 121 122222222222223
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
++---.|.+|.+-.-- |. -....++.....+.++-. +..+++.|+ ...|+-++++.|..+..+....+++++|..
T Consensus 109 ~v~L~~DR~IefHak~-G~-hy~~RIP~~GRDm~y~~~--scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 109 SVFLQNDRTIEFHAKY-GR-HYRTRIPKFGRDMKYHKP--SCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSI 183 (703)
T ss_pred heEeecCceeeehhhc-Ce-eeeeecCcCCccccccCC--CccEEEeec-CcceEEEEccccccccccccccccceeeee
Confidence 3333445555554211 11 111122222223333322 233444443 457999999999999989888899999999
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (446)
++-.. +|++|+.||.|-.||.|+...+..++......
T Consensus 184 n~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~------------------------------------------ 220 (703)
T KOG2321|consen 184 NEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVN------------------------------------------ 220 (703)
T ss_pred cCccc-eEEecccCceEEEecchhhhhheeeecccccC------------------------------------------
Confidence 98876 57889999999999999865554443211100
Q ss_pred cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274 279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 358 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~ 358 (446)
.+++ ......|+++.|+.+|-.++.|+.+|.+.|||+.+.++.++. ......+.
T Consensus 221 ---------------s~pg--------~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k---dh~~e~pi 274 (703)
T KOG2321|consen 221 ---------------SHPG--------GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK---DHGYELPI 274 (703)
T ss_pred ---------------CCcc--------ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec---ccCCccce
Confidence 0000 011235999999999999999999999999999987654321 00011122
Q ss_pred eEEEEcC--CCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274 359 IQLATTQ--DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423 (446)
Q Consensus 359 ~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW 423 (446)
..+.+-+ +...+++.....+++||-.+|+....+.--. .++++++=|++.++.++-.+..+..+
T Consensus 275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred eeecccccCCCceEEecchHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeE
Confidence 2233322 2334444444578999999999887766433 49999999999999999888777666
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.44 E-value=2.6e-11 Score=119.37 Aligned_cols=247 Identities=16% Similarity=0.175 Sum_probs=162.5
Q ss_pred CeEEEEECCCC-eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce--ee----eeeCCCCCeEEEEE
Q 013274 126 HYVKVWDTNCT-RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI--SQ----TLSGHRDGIMTVEW 198 (446)
Q Consensus 126 ~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~--~~----~l~~h~~~v~sv~~ 198 (446)
+.+.+|++... .+...+.....+.++.++++.+ .+++.|+.+|+|.+||++.+.. .. ....|..+++++.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47999999876 5666777778899999999865 5899999999999999987754 22 23469999999999
Q ss_pred ecCCCe-EEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274 199 STSSEW-ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277 (446)
Q Consensus 199 s~~~~~-~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (446)
..+... -|+|+|.||.|..|+++.-..-. ..... ..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~-----e~~~~------------------------~~-------------- 336 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPV-----EGLLL------------------------ES-------------- 336 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccch-----hhccc------------------------cc--------------
Confidence 765432 25799999999999887432100 00000 00
Q ss_pred ecccceeecCCccccccCCCcccccccccccccCeEEEEEccC-CCEEEEeecCCcEEEEecCcCceee-eeee---EEE
Q 013274 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTL-VNFE---TVR 352 (446)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~sgs~D~~i~lWd~~~~~~~~-~~~~---~~~ 352 (446)
..+. .. .. .-...+++++|.+. -..++.|+.+|.|.-=+-...+... ..++ ...
T Consensus 337 ---------------~~~~----~~-~~-~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~ 395 (555)
T KOG1587|consen 337 ---------------KKHK----GQ-QS-SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI 395 (555)
T ss_pred ---------------cccc----cc-cc-ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc
Confidence 0000 00 00 00123788899874 3567789999988652222211111 1111 111
Q ss_pred eecCCCeEEEEcCCCcEEEE-eCCCceEEEEee-cCceEEEecccccceEEEEEcCCC-CEEEEeeCCCcEEEeCCCCCC
Q 013274 353 LQTSKPIQLATTQDPAVVFV-PCMTAVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~-~~~~~~~l~gH~~~v~~~~fSpd~-~~lvtgs~D~~v~vW~~~~~~ 429 (446)
.+.+....+..+|-...++. +++-.+++|.-. ....+..+..+.+.|++++|||-. ..++++..||.|-+||+-...
T Consensus 396 ~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 396 THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred ccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 22233444556665555554 455689999987 667778888899999999999985 567889999999999998766
Q ss_pred CCCcCCCcc
Q 013274 430 SDGVDAGPM 438 (446)
Q Consensus 430 ~~~~~~~~~ 438 (446)
..++..-++
T Consensus 476 ~~Pv~s~~~ 484 (555)
T KOG1587|consen 476 EEPVLSQKV 484 (555)
T ss_pred cCCcccccc
Confidence 665554433
No 204
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=5.2e-12 Score=126.99 Aligned_cols=194 Identities=16% Similarity=0.245 Sum_probs=149.5
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc--eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCC
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG 192 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~ 192 (446)
+...++.+..+..+-+||...+..+...++... .++.....+..+..++++|+.-+.|.+|+..-.+....+.||.+.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 445778888888999999988777766665443 233444445556678999999999999999744444579999999
Q ss_pred eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272 (446)
Q Consensus 193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (446)
+.++.++-++.+ ++|.|.|.++|+|++.+.+...
T Consensus 178 iF~i~~s~dg~~-i~s~SdDRsiRlW~i~s~~~~~--------------------------------------------- 211 (967)
T KOG0974|consen 178 IFSIVTSLDGRY-IASVSDDRSIRLWPIDSREVLG--------------------------------------------- 211 (967)
T ss_pred eEEEEEccCCcE-EEEEecCcceeeeecccccccC---------------------------------------------
Confidence 999999999886 7999999999999997643110
Q ss_pred CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 352 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~ 352 (446)
...-+|...|..+.|+|+ +++|++.|-++++|+..-.
T Consensus 212 ------------------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~----------- 248 (967)
T KOG0974|consen 212 ------------------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT----------- 248 (967)
T ss_pred ------------------------------cccccccceeEEEEeccc--eeEEeccceEEEEEecccc-----------
Confidence 001378899999999998 9999999999999954321
Q ss_pred eecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccc-cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCC
Q 013274 353 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 431 (446)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~-~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~ 431 (446)
.+.++.+|. +.++.++..++...++|++.|+.+++|+.....+.
T Consensus 249 -----------------------------------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 249 -----------------------------------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred -----------------------------------eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 112344554 46899999999999999999999999999866544
Q ss_pred C
Q 013274 432 G 432 (446)
Q Consensus 432 ~ 432 (446)
+
T Consensus 294 ~ 294 (967)
T KOG0974|consen 294 G 294 (967)
T ss_pred c
Confidence 3
No 205
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3.6e-11 Score=102.19 Aligned_cols=229 Identities=15% Similarity=0.146 Sum_probs=150.5
Q ss_pred EEeecCCcEEEEEeCCCeEEEEECCCC----------eeeEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274 110 IWYPVDTGLFVTGSYDHYVKVWDTNCT----------RVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (446)
Q Consensus 110 ~~~~~~~~~l~s~s~D~~i~iWd~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~ 178 (446)
+++| .+++|+.|..+|+|-+..+++- ..+..+ .+.++++.+++.. .+|++++ ||.|+-|--+
T Consensus 17 a~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-----~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 17 AISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-----DFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred hhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-----hheeecc-CceEEEeeeh
Confidence 4555 5779999999999999997531 122222 2467788888873 2455554 6999988653
Q ss_pred CC------ceeeee--eCC-----CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccc
Q 013274 179 SG------AISQTL--SGH-----RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKR 245 (446)
Q Consensus 179 ~~------~~~~~l--~~h-----~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (446)
.. +.+..+ +-| -..|.++-..|..+.+ +.++.|+.+.-||+.+++..+.
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~AgGD~~~y~~dlE~G~i~r~----------------- 151 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LFAGGDGVIYQVDLEDGRIQRE----------------- 151 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EEecCCeEEEEEEecCCEEEEE-----------------
Confidence 21 111111 122 2367888888887654 5666899999999987653222
Q ss_pred ceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEE
Q 013274 246 KVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL 325 (446)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 325 (446)
..+|.+.|.+++-......++
T Consensus 152 -----------------------------------------------------------~rGHtDYvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 152 -----------------------------------------------------------YRGHTDYVHSVVGRNANGQIL 172 (325)
T ss_pred -----------------------------------------------------------EcCCcceeeeeeecccCccee
Confidence 357888999998855455678
Q ss_pred EeecCCcEEEEecCcCceeeeeeeEEE-ee--c--CCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceE
Q 013274 326 SAGSDSRIRLWDVESGRNTLVNFETVR-LQ--T--SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVN 400 (446)
Q Consensus 326 sgs~D~~i~lWd~~~~~~~~~~~~~~~-~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~ 400 (446)
||+.||++|+||.++++.... ++..+ .. . ...-..+..-+..-++.+.+....+|.+.+.+...+|+ -..+|.
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~-ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~ 250 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSM-IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVH 250 (325)
T ss_pred ecCCCccEEEEeccccceeEE-eccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEe-ccccee
Confidence 999999999999999865322 11111 00 0 11112344445556666677789999998877766554 334556
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 401 CCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 401 ~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
.+.| +...+++++..+.|.-|.++
T Consensus 251 ~v~F--~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 251 LVDF--VDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred Eeee--ecceEEEeccccceeeeeec
Confidence 6777 45567888888888888776
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.43 E-value=1.3e-12 Score=120.19 Aligned_cols=285 Identities=17% Similarity=0.286 Sum_probs=196.5
Q ss_pred eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCC
Q 013274 47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDH 126 (446)
Q Consensus 47 ~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~ 126 (446)
+.+.++ .+|++|+-|+.-|.+...|..+....- .+. -...|..+.|.. +.++|| .....
T Consensus 133 Y~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~~---------Ei~---------v~Etv~Dv~~LH-neq~~A-VAQK~ 191 (545)
T KOG1272|consen 133 YHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLHF---------EIN---------VMETVRDVTFLH-NEQFFA-VAQKK 191 (545)
T ss_pred eeeeec-CCccEEEecCCccceeeeecccceeee---------eee---------hhhhhhhhhhhc-chHHHH-hhhhc
Confidence 567776 478999999999999999987654210 010 112344556654 344554 44567
Q ss_pred eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEE
Q 013274 127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWIL 206 (446)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l 206 (446)
-+.|||-. |..+.++.-...+.++.|.|. +.+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|-+. ++
T Consensus 192 y~yvYD~~-GtElHClk~~~~v~rLeFLPy---HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vi 266 (545)
T KOG1272|consen 192 YVYVYDNN-GTELHCLKRHIRVARLEFLPY---HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VI 266 (545)
T ss_pred eEEEecCC-CcEEeehhhcCchhhhcccch---hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eE
Confidence 89999965 566666665566777777764 56899999999999999999999998888888899998888765 67
Q ss_pred EEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeec
Q 013274 207 VTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 286 (446)
Q Consensus 207 ~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (446)
-.|...|+|-+|.......
T Consensus 267 h~GhsnGtVSlWSP~skeP------------------------------------------------------------- 285 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPNSKEP------------------------------------------------------------- 285 (545)
T ss_pred EEcCCCceEEecCCCCcch-------------------------------------------------------------
Confidence 7899999999997543210
Q ss_pred CCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCC
Q 013274 287 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD 366 (446)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (446)
......|.++|++|++.++|.|++|.|.|..++|||+..-.. +..+.. .-....++++ +
T Consensus 286 ---------------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-l~t~~t----p~~a~~ls~S-q 344 (545)
T KOG1272|consen 286 ---------------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-LHTYRT----PHPASNLSLS-Q 344 (545)
T ss_pred ---------------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc-cceeec----CCCccccccc-c
Confidence 012346889999999999999999999999999999986432 111111 1122233333 4
Q ss_pred CcEEEEeCCCceEEEEe-ecC--ceEEEeccc--ccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC--CCCCcCCCccC
Q 013274 367 PAVVFVPCMTAVKAFDI-WSG--KTCLTFRGH--YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH--ISDGVDAGPMQ 439 (446)
Q Consensus 367 ~~~~~~~~~~~~~~~d~-~~~--~~~~~l~gH--~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~--~~~~~~~~~~~ 439 (446)
..+++++.++.+.+|.- -.+ ....-+..| .+.|.++.|=|-...|--|-..|.-.+--|..+ --|.+..+|+.
T Consensus 345 kglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfe 424 (545)
T KOG1272|consen 345 KGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFE 424 (545)
T ss_pred ccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcch
Confidence 55677777788999953 221 111222333 248899999998777777666666666666543 45666666654
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.38 E-value=1.7e-10 Score=103.73 Aligned_cols=196 Identities=15% Similarity=0.203 Sum_probs=135.4
Q ss_pred ceeEEEeecCCCCEEEEeeCCC--cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274 45 SINSLQVDLTEERYLLSGASDS--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (446)
Q Consensus 45 ~v~~l~~s~~~~~~l~s~s~Dg--~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~ 122 (446)
.|-.+-|+. .++|-.+.+. ..++.+.++.... +.+ --..+|.++.. +.++|+.+
T Consensus 48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I---Ce~---------------~fpt~IL~Vrm---Nr~RLvV~ 103 (391)
T KOG2110|consen 48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI---CEI---------------FFPTSILAVRM---NRKRLVVC 103 (391)
T ss_pred EEEEeeccc---ceeEEEecCCCceEEEEEcccCceE---EEE---------------ecCCceEEEEE---ccceEEEE
Confidence 455566763 3555555544 4888887754321 010 01123444443 56778877
Q ss_pred eCCCeEEEEECCCCeeeEEEecC-CceE-EeeeccCCCCceEEEEe--eCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 123 SYDHYVKVWDTNCTRVVMNFKMP-GKVY-RTAMSPLAASHMLIAAG--TEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~lasg--s~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
=.+. |.|+|+++.+++.++... .+.. -.++++... ..++|.- ...|.|.+||+.+-.....+..|.+++-+++|
T Consensus 104 Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalaf 181 (391)
T KOG2110|consen 104 LEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAF 181 (391)
T ss_pred Eccc-EEEEecccceeehhhhccCCCccceEeeccCCC-CceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEE
Confidence 7664 999999999998877643 2222 234444322 2355543 34689999999999999999999999999999
Q ss_pred ecCCCeEEEEeeCCCc-EEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274 199 STSSEWILVTGGCDGA-IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~-I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (446)
+++|. +|||+|+-|+ ||++.+..+..+..|..
T Consensus 182 s~~G~-llATASeKGTVIRVf~v~~G~kl~eFRR---------------------------------------------- 214 (391)
T KOG2110|consen 182 SPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRR---------------------------------------------- 214 (391)
T ss_pred CCCCC-EEEEeccCceEEEEEEcCCccEeeeeeC----------------------------------------------
Confidence 99998 5899999997 89999887765443321
Q ss_pred ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 341 (446)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~ 341 (446)
|. -...|.+|+|+||+++|+..|..++|+++-++..
T Consensus 215 -------------------G~---------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 215 -------------------GT---------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -------------------Cc---------eeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 00 0124899999999999999999999999988753
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.38 E-value=2.4e-11 Score=114.01 Aligned_cols=147 Identities=18% Similarity=0.311 Sum_probs=96.5
Q ss_pred ccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEe-CCCC
Q 013274 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD-IASG 180 (446)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd-~~~~ 180 (446)
-+..|+|+.|.|.+..+|+.+-.++.+.++|.+-.... ... .+.... ....++.. .|- ..+.
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~-----t~p----~~~~~k-~~~~f~i~-------t~ksk~~r 280 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA-----TAP----SYQALK-DGDQFAIL-------TSKSKKTR 280 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccC-----CCC----cccccC-CCCeeEEe-------eeeccccC
Confidence 34689999999988889999999999999987311000 000 011110 01112211 111 1111
Q ss_pred ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS 260 (446)
Q Consensus 181 ~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (446)
.++....--.+.|...+|+||+++ ||+.|.||.+||+|..+.+.+..+
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~m------------------------------- 328 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVM------------------------------- 328 (636)
T ss_pred CccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHHHHHH-------------------------------
Confidence 233333223458899999999986 799999999999998754321110
Q ss_pred cCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274 261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~ 340 (446)
+.-++...||+|||||+||++|+.|--|.||.+..
T Consensus 329 ---------------------------------------------kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 329 ---------------------------------------------KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ---------------------------------------------HhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 11245689999999999999999999999999987
Q ss_pred Cc
Q 013274 341 GR 342 (446)
Q Consensus 341 ~~ 342 (446)
++
T Consensus 364 rR 365 (636)
T KOG2394|consen 364 RR 365 (636)
T ss_pred ce
Confidence 65
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=7.4e-10 Score=97.87 Aligned_cols=179 Identities=14% Similarity=0.250 Sum_probs=121.3
Q ss_pred CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-CceeeeeeCC--CCCeEEEEEecCC
Q 013274 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGH--RDGIMTVEWSTSS 202 (446)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-~~~~~~l~~h--~~~v~sv~~s~~~ 202 (446)
.++.|||-....++..+...+.+..+.+.+. .|+.. ..+.|+||...+ .+.++.+... ...+.++.-.-+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~-----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~- 147 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD-----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN- 147 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCC-----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCC-
Confidence 6899999777788888888888888877653 33433 357899999874 4555555432 233444432222
Q ss_pred CeEEEE-eeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274 203 EWILVT-GGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 281 (446)
Q Consensus 203 ~~~l~S-~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (446)
+.+||- |-.-|.|+|-|+...+.
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~-------------------------------------------------------- 171 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKP-------------------------------------------------------- 171 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCc--------------------------------------------------------
Confidence 223333 23347777777653210
Q ss_pred ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCc-EEEEecCcCceeeeeeeEEEeecCCCeE
Q 013274 282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR-IRLWDVESGRNTLVNFETVRLQTSKPIQ 360 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~-i~lWd~~~~~~~~~~~~~~~~~~~~~~~ 360 (446)
.......+|.+.|.||+.+.+|..+||+|..|+ |||||..++.. +.+ ++. +
T Consensus 172 ------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-l~E---~RR--G---- 223 (346)
T KOG2111|consen 172 ------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-LQE---LRR--G---- 223 (346)
T ss_pred ------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-eee---eec--C----
Confidence 000123589999999999999999999999999 59999887742 111 111 0
Q ss_pred EEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 361 LATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
.....|.|++||||.++|+..|.-|||.|+.+...
T Consensus 224 ---------------------------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 224 ---------------------------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ---------------------------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 12346899999999999999999999999977643
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=4.6e-10 Score=110.39 Aligned_cols=217 Identities=16% Similarity=0.175 Sum_probs=134.7
Q ss_pred ccccEeEEEEeecCCcEEEEEeC---CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEEe
Q 013274 102 HKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCD 176 (446)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~s~s~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vwd 176 (446)
+...+.+..|+| |++.|+..+. +..|.+||+.+++........+......++|++. .++.+.+.++ .|++||
T Consensus 197 ~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~--~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 197 SPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMD 273 (429)
T ss_pred CCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC--EEEEEEcCCCCcEEEEEE
Confidence 344566778887 7877775543 4579999998876543333444444567777542 3333434444 599999
Q ss_pred CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEc--cCCceeEEeecccccccCCCcccccceeeccccc
Q 013274 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI--RRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLS 254 (446)
Q Consensus 177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (446)
++++... .+..+...+....|+|+++.++.+...++...||.+ .++... .+
T Consensus 274 ~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~l------------------------- 326 (429)
T PRK03629 274 LASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RI------------------------- 326 (429)
T ss_pred CCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Ee-------------------------
Confidence 9988654 344445567889999999975445444566666643 222100 00
Q ss_pred cCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC---C
Q 013274 255 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---S 331 (446)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D---~ 331 (446)
..+........|+|||++|+..+.+ .
T Consensus 327 ---------------------------------------------------t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 327 ---------------------------------------------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred ---------------------------------------------------ecCCCCccCEEECCCCCEEEEEEccCCCc
Confidence 0001123456799999998776543 3
Q ss_pred cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-c---eEEEEeecCceEEEecccccceEEEEEcC
Q 013274 332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-A---VKAFDIWSGKTCLTFRGHYEYVNCCCFSS 406 (446)
Q Consensus 332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~d~~~~~~~~~l~gH~~~v~~~~fSp 406 (446)
.|.+||+.++..... .. ........++||+..++..+.. . +.++++ +++....+.+|.+.+...+|||
T Consensus 356 ~I~~~dl~~g~~~~L--t~----~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 356 HIAKQDLATGGVQVL--TD----TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEEEEECCCCCeEEe--CC----CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 588899987753221 11 1112345688999877665432 2 344444 5777788899999999999997
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.2e-09 Score=107.35 Aligned_cols=218 Identities=11% Similarity=0.093 Sum_probs=131.4
Q ss_pred CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee---CCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT---EDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (446)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs---~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~ 202 (446)
..|.+||.+...........+.+....++|++. .|+..+ .+..|++||+.+++.. .+....+.+.++.|+|++
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~---~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG 254 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCC
Confidence 379999987554333223334566778888643 444332 3457999999888542 222223334568999999
Q ss_pred CeEEEEeeCCC--cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274 203 EWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 280 (446)
Q Consensus 203 ~~~l~S~s~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (446)
+.++++.+.+| .|.+||+.++...+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt--------------------------------------------------- 283 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVT--------------------------------------------------- 283 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEcc---------------------------------------------------
Confidence 97665655555 4888887654321100
Q ss_pred cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC-CcEEEE--ecCcCceeeeeeeEEEeecCC
Q 013274 281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD-SRIRLW--DVESGRNTLVNFETVRLQTSK 357 (446)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D-~~i~lW--d~~~~~~~~~~~~~~~~~~~~ 357 (446)
.+...+....|+|||+.|+..+.+ +..+|| |+.++..... ......
T Consensus 284 --------------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-----t~~~~~ 332 (429)
T PRK03629 284 --------------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-----TWEGSQ 332 (429)
T ss_pred --------------------------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe-----ecCCCC
Confidence 011224567899999988766654 445555 6665532211 111223
Q ss_pred CeEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCc---EEEeCCCCCCC
Q 013274 358 PIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ---ILVWCPSRHIS 430 (446)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~---v~vW~~~~~~~ 430 (446)
.....++|++..++.... ..+.+||+.+++.. .+... .......|||||++|+..+.|+. +.+|++++...
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 345678898877655432 24677888777643 33321 23356789999999999888765 67778775543
Q ss_pred C
Q 013274 431 D 431 (446)
Q Consensus 431 ~ 431 (446)
-
T Consensus 411 ~ 411 (429)
T PRK03629 411 A 411 (429)
T ss_pred E
Confidence 3
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.5e-10 Score=104.66 Aligned_cols=255 Identities=13% Similarity=0.142 Sum_probs=164.8
Q ss_pred ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC------CeeeEEEec--CCceEEeeeccCCCCceEEEEeeCCC
Q 013274 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC------TRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDV 170 (446)
Q Consensus 99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~ 170 (446)
..+|.+.|.++.|+. +++.|++|++|..+++|+++. .+++..... ...+++++|.. ....+.+|..++
T Consensus 52 ~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~---~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 52 VREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL---ENRFLYSGERWG 127 (609)
T ss_pred hhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc---CCeeEecCCCcc
Confidence 358999999988876 689999999999999999753 333333322 24466666653 445788999999
Q ss_pred cEEEEeCCCCceeeeee--CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccccee
Q 013274 171 QVRLCDIASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVS 248 (446)
Q Consensus 171 ~v~vwd~~~~~~~~~l~--~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (446)
+|.+-|+++...+..+. ...+.|..+..+|-.+ +|++.+.++.|.+||+|.... .+ . +
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~---------~~-~--~------- 187 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQN---------PI-S--L------- 187 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCC---------CC-c--e-------
Confidence 99999999987766553 2345899999999865 689999999999999985210 00 0 0
Q ss_pred eccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEe
Q 013274 249 ISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSA 327 (446)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sg 327 (446)
..++. -......+-|+|.. .+|++.
T Consensus 188 ----------------------------------~~~AN--------------------~~~~F~t~~F~P~~P~Li~~~ 213 (609)
T KOG4227|consen 188 ----------------------------------VLPAN--------------------SGKNFYTAEFHPETPALILVN 213 (609)
T ss_pred ----------------------------------eeecC--------------------CCccceeeeecCCCceeEEec
Confidence 00000 01124556788865 577888
Q ss_pred ecCCcEEEEecCcCceeeeeeeE-EEeec--CCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEecccc-------
Q 013274 328 GSDSRIRLWDVESGRNTLVNFET-VRLQT--SKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHY------- 396 (446)
Q Consensus 328 s~D~~i~lWd~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH~------- 396 (446)
+.-+-+.+||+......+..+.. +.++. ...+.+.+++.+..+++--.. .-..+|+-+..+..--..|.
T Consensus 214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~ 293 (609)
T KOG4227|consen 214 SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNI 293 (609)
T ss_pred cccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceee
Confidence 88899999999865432221111 11111 122456677777766543222 22456665544332222232
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC-CCCC
Q 013274 397 EYVNCCCFSSQDQELYTGGNDRQILVWCPSRH-ISDG 432 (446)
Q Consensus 397 ~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~-~~~~ 432 (446)
..+-+|+|--| ..++|||.|-.|.+|.++.. .+.|
T Consensus 294 ~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G 329 (609)
T KOG4227|consen 294 KTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYG 329 (609)
T ss_pred eeeeeeeeecc-eeeeccCcccceEEEecCCCccccC
Confidence 24567888644 55999999999999977633 3444
No 213
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.33 E-value=5.6e-11 Score=111.46 Aligned_cols=142 Identities=20% Similarity=0.342 Sum_probs=104.8
Q ss_pred CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC
Q 013274 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT 136 (446)
Q Consensus 57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~ 136 (446)
..++-+++||.+.|-+-. +.. ......|.+++.+..|+| +|.-|+|+|.||-|++|.-...
T Consensus 76 d~~~i~s~DGkf~il~k~-~rV-----------------E~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrsGM 136 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-ARV-----------------ERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRSGM 136 (737)
T ss_pred ceEEEEcCCceEEEeccc-chh-----------------hhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEeccch
Confidence 467788899998887632 110 112358999999999998 7889999999999999985432
Q ss_pred eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEE
Q 013274 137 RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIR 216 (446)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~ 216 (446)
-.-...+....++++++.|.+. .++.+. .+.+.|=-+..+..+-..+.|.+-|.++.|++.+. +++||++|-..+
T Consensus 137 LRStl~Q~~~~v~c~~W~p~S~--~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK 211 (737)
T KOG1524|consen 137 LRSTVVQNEESIRCARWAPNSN--SIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK 211 (737)
T ss_pred HHHHHhhcCceeEEEEECCCCC--ceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence 2111122345688999998754 233332 35677777777766777889999999999999876 689999999999
Q ss_pred EEEccC
Q 013274 217 FWDIRR 222 (446)
Q Consensus 217 iWd~~~ 222 (446)
+||-..
T Consensus 212 vWD~~G 217 (737)
T KOG1524|consen 212 IWDAQG 217 (737)
T ss_pred eecccC
Confidence 999653
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=3.6e-10 Score=102.38 Aligned_cols=195 Identities=15% Similarity=0.229 Sum_probs=143.9
Q ss_pred EEEEeeCCCcEEEEeCCCCc----eeeeeeCCCCCeEEEEEecCCCeEEEEeeCC--CcEEEEEccCCceeEEeeccccc
Q 013274 162 LIAAGTEDVQVRLCDIASGA----ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD--GAIRFWDIRRAGCFRVLDQSQSQ 235 (446)
Q Consensus 162 ~lasgs~d~~v~vwd~~~~~----~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D--g~I~iWd~~~~~~~~~~~~~~~~ 235 (446)
.|.++-.+|.+.+|..+.+. .+..+..+ ..+..|.-+|..++++++|+.. ..++|||+.+. .+++.+.+-+
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvp 193 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVP 193 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCC
Confidence 46677789999999998542 23333333 5567777778888888889998 89999999764 2233211100
Q ss_pred ccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEE
Q 013274 236 LGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL 315 (446)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 315 (446)
. ..+... -.-+++.+
T Consensus 194 n---------------------------------------------------D~L~Lr--------------VPvW~tdi 208 (412)
T KOG3881|consen 194 N---------------------------------------------------DRLGLR--------------VPVWITDI 208 (412)
T ss_pred C---------------------------------------------------ccccce--------------eeeeeccc
Confidence 0 000000 01236777
Q ss_pred EEccC--CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEE-
Q 013274 316 KVTED--GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLT- 391 (446)
Q Consensus 316 ~fs~d--g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~- 391 (446)
.|-+. ...+++++.-+.+|+||...++.++..+ .+.......+...|++..++++.. ..+..||+..+++...
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f---d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF---DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEe---ccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 88877 7889999999999999999876554433 334556667888899988887744 5789999999998776
Q ss_pred ecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 392 FRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 392 l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
|.|-++.|.++..+|..++|++||-|+-|||+|..+
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 899999999999999999999999999999999986
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.7e-10 Score=104.40 Aligned_cols=206 Identities=17% Similarity=0.206 Sum_probs=143.4
Q ss_pred ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (446)
Q Consensus 43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~ 122 (446)
+++|-.+... ++ .|++|-.+|.+.+|..+.+.... . +... .. -+ ..+..+.-.+....++|+|
T Consensus 105 ~~~I~gl~~~--dg-~Litc~~sG~l~~~~~k~~d~hs-------s-~l~~--la---~g-~g~~~~r~~~~~p~Iva~G 167 (412)
T KOG3881|consen 105 TKSIKGLKLA--DG-TLITCVSSGNLQVRHDKSGDLHS-------S-KLIK--LA---TG-PGLYDVRQTDTDPYIVATG 167 (412)
T ss_pred cccccchhhc--CC-EEEEEecCCcEEEEeccCCcccc-------c-ccee--ee---cC-CceeeeccCCCCCceEecC
Confidence 3455555553 33 68899999999999987543210 0 0000 00 01 2233344445556688999
Q ss_pred eCC--CeEEEEECCCCeeeEEEec----------CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc-eeeeeeCC
Q 013274 123 SYD--HYVKVWDTNCTRVVMNFKM----------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGH 189 (446)
Q Consensus 123 s~D--~~i~iWd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-~~~~l~~h 189 (446)
|.. ..+++||++..+.+..-.. +-....+.|.+..+ +..||+++.-+.+++||.+.+. ++..+.--
T Consensus 168 Gke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~ 246 (412)
T KOG3881|consen 168 GKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTRHQRRPVAQFDFL 246 (412)
T ss_pred chhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCcccCcceeEeccc
Confidence 999 9999999988765543321 11123344444322 5679999999999999999875 55667666
Q ss_pred CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR 269 (446)
Q Consensus 190 ~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (446)
..+++++...|+++. +++|..-+.+..+|+|+++.....
T Consensus 247 E~~is~~~l~p~gn~-Iy~gn~~g~l~~FD~r~~kl~g~~---------------------------------------- 285 (412)
T KOG3881|consen 247 ENPISSTGLTPSGNF-IYTGNTKGQLAKFDLRGGKLLGCG---------------------------------------- 285 (412)
T ss_pred cCcceeeeecCCCcE-EEEecccchhheecccCceeeccc----------------------------------------
Confidence 889999999999875 688988999999999976532110
Q ss_pred ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCc
Q 013274 270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 342 (446)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~ 342 (446)
+.+-.|.|++|..+|.+.+|+++|-|+.|||+|+.+.+
T Consensus 286 -----------------------------------~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 286 -----------------------------------LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred -----------------------------------cCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 12335679999999999999999999999999999843
No 216
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.32 E-value=1e-11 Score=106.71 Aligned_cols=166 Identities=19% Similarity=0.306 Sum_probs=119.6
Q ss_pred CccceeEEEeecCCCC--EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 42 HKGSINSLQVDLTEER--YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 42 H~~~v~~l~~s~~~~~--~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
-.|+|.|..+...++. +|+.|.++|.|.+||+.++... ...+.+..+. .....|+..|.++.+.+ .-..=
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~------~~~~~~~kv~-~~~ash~qpvlsldyas-~~~rG 220 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI------IQLPQSSKVE-SPNASHKQPVLSLDYAS-SCDRG 220 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee------eccccccccc-cchhhccCcceeeeech-hhcCC
Confidence 4578888876444443 6788899999999999876431 1111211111 12246888999887754 22344
Q ss_pred EEEeCCCeEEEEECCCC--ee----eEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274 120 VTGSYDHYVKVWDTNCT--RV----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v 193 (446)
++|+.+..+..|+++.. .+ ..+++.+| +..+.+-+ ++.++|+++.|+.||||+-++..++..|+-|.+.|
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpG-v~gvrIRp---D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv 296 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPG-VSGVRIRP---DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV 296 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCC-ccceEEcc---CCcEEeecccCCcEEEEEeccCCchhhhhhhhcce
Confidence 78899999999998643 21 12222333 22333433 56799999999999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274 194 MTVEWSTSSEWILVTGGCDGAIRFWDI 220 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~ 220 (446)
++|+|+|+.+ +|+++|.|++|-+|++
T Consensus 297 n~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCCc-hhhhccCCceEEeeec
Confidence 9999999976 6899999999999986
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.8e-09 Score=106.71 Aligned_cols=232 Identities=11% Similarity=0.073 Sum_probs=138.0
Q ss_pred CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee---CCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT---EDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (446)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs---~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~ 202 (446)
..|.+||.+...........+.+....++|++ ..|+..+ .+..|++||+.++.. ..+..+.+.+.+.+|+|++
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG---~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNR---QEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCC---CEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCC
Confidence 47888888655433322334457777888864 3455443 246899999998865 3455667778889999999
Q ss_pred CeEEEEeeCCCc--EEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274 203 EWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 280 (446)
Q Consensus 203 ~~~l~S~s~Dg~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (446)
+.++++.+.++. |.+||+.++...+ +
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-L--------------------------------------------------- 285 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTR-L--------------------------------------------------- 285 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEE-c---------------------------------------------------
Confidence 987677777766 5555765432110 0
Q ss_pred cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CC--cEEEEecCcCceeeeeeeEEEeecCC
Q 013274 281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTSK 357 (446)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~--~i~lWd~~~~~~~~~~~~~~~~~~~~ 357 (446)
..+.+......|+|||++|+..+. ++ .|.+||+.++...... .....
T Consensus 286 -------------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt-----~~~~~ 335 (435)
T PRK05137 286 -------------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS-----FGGGR 335 (435)
T ss_pred -------------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee-----cCCCc
Confidence 011122345689999998876653 33 5788888765432211 11222
Q ss_pred CeEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC------CcEEEeCCCC
Q 013274 358 PIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND------RQILVWCPSR 427 (446)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D------~~v~vW~~~~ 427 (446)
.....++|++..++.... ..+.+|++..+.. +.+. +...+...+|||||++|+-.+.+ ..+.+.++++
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 334668888887765432 2466677644432 3332 23356789999999998754442 2456667765
Q ss_pred CCCCCcCCCccCccCCCC
Q 013274 428 HISDGVDAGPMQDQDNWS 445 (446)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~ 445 (446)
.....+..........|+
T Consensus 414 ~~~~~l~~~~~~~~p~Ws 431 (435)
T PRK05137 414 RNEREVPTPGDASDPAWS 431 (435)
T ss_pred CceEEccCCCCccCcccC
Confidence 544333222223444554
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.31 E-value=8.4e-10 Score=97.57 Aligned_cols=222 Identities=18% Similarity=0.274 Sum_probs=152.5
Q ss_pred ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (446)
Q Consensus 43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~ 122 (446)
.++|+|.+|++ +...+|.+-....|.||........+. .+++..|...|+.+.|.| ....++||
T Consensus 10 ~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~--------------~htls~Hd~~vtgvdWap-~snrIvtc 73 (361)
T KOG1523|consen 10 LEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEP--------------AHTLSEHDKIVTGVDWAP-KSNRIVTC 73 (361)
T ss_pred cCceeeeeecC-CCceEEeccCCceEEEEEecCCCCcee--------------ceehhhhCcceeEEeecC-CCCceeEc
Confidence 37899999986 577888888888999998654432221 123457888999999998 56699999
Q ss_pred eCCCeEEEEEC-CCCeee---EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee---e-eeeCCCCCeE
Q 013274 123 SYDHYVKVWDT-NCTRVV---MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS---Q-TLSGHRDGIM 194 (446)
Q Consensus 123 s~D~~i~iWd~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~---~-~l~~h~~~v~ 194 (446)
+.|....+|.. +.++-. ..+.+.....++.++|.. +.||+|+.-..|-||=.+..+-- + .-+.+...|.
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e---nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE---NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC---ceEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999998 544432 223455667778888754 57999999999999988765422 1 2235778999
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN 274 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (446)
++.|.|++= +|++||.|+..|++..- ++-.+.... .... . .+.
T Consensus 151 sldWhpnnV-LlaaGs~D~k~rVfSay----IK~Vdekpa------------------------p~pW---g-sk~---- 193 (361)
T KOG1523|consen 151 SLDWHPNNV-LLAAGSTDGKCRVFSAY----IKGVDEKPA------------------------PTPW---G-SKM---- 193 (361)
T ss_pred eeeccCCcc-eecccccCcceeEEEEe----eeccccCCC------------------------CCCC---c-cCC----
Confidence 999999864 68899999999999742 111110000 0000 0 000
Q ss_pred ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCc
Q 013274 275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 342 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~ 342 (446)
+.+. +..+ ...-.+.|..+.|+|.|..|+=.+-|.++.+=|.....
T Consensus 194 -----PFG~---------------lm~E--~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 194 -----PFGQ---------------LMSE--ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred -----cHHH---------------HHHh--hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 0000 0000 00224679999999999999999999999999987654
No 219
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.31 E-value=7.5e-11 Score=104.42 Aligned_cols=304 Identities=13% Similarity=0.140 Sum_probs=178.5
Q ss_pred eecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274 112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (446)
Q Consensus 112 ~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~ 191 (446)
++++|+++|++++- .+.|=|.++-+...-|.+-.++.-+.+..+ +..++.....|+.|.+|++...+.-..+..-++
T Consensus 16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ad--s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKAD--SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred ECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeecc--ceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 33489999999976 777888877665544444334434444433 234667778899999999999988878887888
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccccc-------ccCCCcccccceeecc-ccccCCCCCcCC
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ-------LGRRPPLLKRKVSISK-SLSAGQNSSVKP 263 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 263 (446)
++.++.|||+++.+|.+...|-.|.+|.+.+.++.......... -|+...+..+...... .+...... .-.
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W-~ll 171 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW-ILL 171 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH-HHH
Confidence 99999999999988999999999999999887765432221111 1111111111100000 00000000 000
Q ss_pred CCccccccCCCceeecccceeecCCc--cccccCCCccccccccccc-ccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274 264 RAPQKRSANGNGVRQSSVGRIPAKGS--VRQRLHPGMLSSQDRATAH-YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~ 340 (446)
+.......+.+++..++.+...+... ...++ ..=| .-.+..+.++|.+++|+.|+.|+.+|+-+--+
T Consensus 172 ~~f~~dT~DltgieWsPdg~~laVwd~~Leykv----------~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 172 KEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV----------YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HhcCCCcccccCceECCCCcEEEEecchhhhee----------eeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 00011122334455555554433211 00000 0001 12377889999999999999999998754221
Q ss_pred Cc-------------eee-------------------------------------------eeeeEEEeec---C---CC
Q 013274 341 GR-------------NTL-------------------------------------------VNFETVRLQT---S---KP 358 (446)
Q Consensus 341 ~~-------------~~~-------------------------------------------~~~~~~~~~~---~---~~ 358 (446)
=+ +.. +.+..++... + ..
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 00 000 0000000000 0 11
Q ss_pred eEEEEcCCCcEEEEeCC---CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274 359 IQLATTQDPAVVFVPCM---TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 430 (446)
Q Consensus 359 ~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~ 430 (446)
-.+++++|..+++...+ +.+-+||+...++...|. ...+|....|.|....|+-|.....+-+|.|....+
T Consensus 322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~ 395 (447)
T KOG4497|consen 322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV 395 (447)
T ss_pred ceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence 23677777777766544 467889987666544332 456799999999999888776667799999987653
No 220
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.30 E-value=2.3e-10 Score=101.99 Aligned_cols=306 Identities=15% Similarity=0.204 Sum_probs=173.6
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEE-cccCcCCCCCCccccccc---------e-EEec------------
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYD-VQRATDYEGGGHIAKHRS---------V-FVVD------------ 95 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd-~~~~~~~~~~~~~~~~~~---------~-~~~~------------ 95 (446)
++||...||+...-|. +.-+++.|.|.++|||- .+.++--....+.+..+. . +++.
T Consensus 20 ~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred hcCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence 5799999998777654 45699999999999993 333221100011111100 0 0000
Q ss_pred --------cccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee
Q 013274 96 --------KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT 167 (446)
Q Consensus 96 --------~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs 167 (446)
......|...|..+.+. ....++++.+.|+.+.---.+.+..+-.+.+.. ..++...+-.....|-
T Consensus 99 edfnkm~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~-----~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 99 EDFNKMTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET-----PASALQFDALYAFVGD 172 (404)
T ss_pred hhhhhcchhhhhhhhhcceeeEEec-CCceeEEEeccccceEEEeeccCCcccceEeec-----cCCCCceeeEEEEecc
Confidence 01124688888776664 356788999999876655555554433222111 1111111111334455
Q ss_pred CCCcEEEEeCCCC--ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccc
Q 013274 168 EDVQVRLCDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKR 245 (446)
Q Consensus 168 ~d~~v~vwd~~~~--~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (446)
..+.|.+-.+... .++.++.+|.+.+.+..|.|..+ +|.||+.|..+.+||+-...-..
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~------------------ 233 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTA------------------ 233 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCccee------------------
Confidence 5566666555433 56788999999999999998766 67899999999999985321000
Q ss_pred ceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEE
Q 013274 246 KVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL 325 (446)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 325 (446)
....+|...|..+..-+--+.|+
T Consensus 234 ---------------------------------------------------------~el~gh~~kV~~l~~~~~t~~l~ 256 (404)
T KOG1409|consen 234 ---------------------------------------------------------YELQGHNDKVQALSYAQHTRQLI 256 (404)
T ss_pred ---------------------------------------------------------eeeccchhhhhhhhhhhhheeee
Confidence 01235666677777667778899
Q ss_pred EeecCCcEEEEecCcCceeeeeeeEEE-------------------------ee--cCCCeEEE---EcCCCcEEEEeCC
Q 013274 326 SAGSDSRIRLWDVESGRNTLVNFETVR-------------------------LQ--TSKPIQLA---TTQDPAVVFVPCM 375 (446)
Q Consensus 326 sgs~D~~i~lWd~~~~~~~~~~~~~~~-------------------------~~--~~~~~~~~---~~~~~~~~~~~~~ 375 (446)
|++.||.|.+||+...+....+...-. .+ ......++ .+.-......+..
T Consensus 257 S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e 336 (404)
T KOG1409|consen 257 SCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFE 336 (404)
T ss_pred eccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccce
Confidence 999999999999986543221110000 00 00000000 0000111111122
Q ss_pred CceEEEEee-----c--CceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 376 TAVKAFDIW-----S--GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 376 ~~~~~~d~~-----~--~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
..+|+-|-- + ...+..+..-.-.|+.+.+-..-.+|+|++.|+.|+|||...
T Consensus 337 ~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 337 FSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred eEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 234443321 1 122333332223478888877788999999999999999863
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.1e-09 Score=108.21 Aligned_cols=218 Identities=17% Similarity=0.167 Sum_probs=131.8
Q ss_pred CccccEeEEEEeecCCcEEEEEeCC---CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEE
Q 013274 101 GHKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLC 175 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~~~l~s~s~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vw 175 (446)
.|...+.+..|+| +++.|+..+.+ ..|.+||+.+++........+......+++++. .++++.+.++ .|++|
T Consensus 201 ~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~--~l~~~~s~~g~~~Iy~~ 277 (433)
T PRK04922 201 RSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR--RLALTLSRDGNPEIYVM 277 (433)
T ss_pred cCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC--EEEEEEeCCCCceEEEE
Confidence 3445566777877 78888877744 469999998876543333344444556776532 3444545544 69999
Q ss_pred eCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEE--EccCCceeEEeecccccccCCCcccccceeecccc
Q 013274 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW--DIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL 253 (446)
Q Consensus 176 d~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (446)
|+.++.. ..+..+.......+|+|++++++.+...+|...+| |+.+++..+ +
T Consensus 278 d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-l------------------------ 331 (433)
T PRK04922 278 DLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-L------------------------ 331 (433)
T ss_pred ECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-e------------------------
Confidence 9988864 44555666667889999999765555455654444 443321100 0
Q ss_pred ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC--
Q 013274 254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-- 331 (446)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~-- 331 (446)
..+......++|+|||++|+..+.++
T Consensus 332 ----------------------------------------------------t~~g~~~~~~~~SpDG~~Ia~~~~~~~~ 359 (433)
T PRK04922 332 ----------------------------------------------------TFQGNYNARASVSPDGKKIAMVHGSGGQ 359 (433)
T ss_pred ----------------------------------------------------ecCCCCccCEEECCCCCEEEEEECCCCc
Confidence 00001123468999999987654433
Q ss_pred -cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceEEEEEcC
Q 013274 332 -RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 406 (446)
Q Consensus 332 -~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp 406 (446)
.|.+||+.++.... +.. ........+++++..++.... ..+.++++ ++.....+..+.+.+...+|||
T Consensus 360 ~~I~v~d~~~g~~~~--Lt~----~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 360 YRIAVMDLSTGSVRT--LTP----GSLDESPSFAPNGSMVLYATREGGRGVLAAVST-DGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eeEEEEECCCCCeEE--CCC----CCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEcccCCCCCCCCccCC
Confidence 69999998765321 111 112234578888886655432 23455555 4555566666677777778876
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.4e-09 Score=107.35 Aligned_cols=232 Identities=15% Similarity=0.148 Sum_probs=137.8
Q ss_pred CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC---CCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (446)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~---d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~ 202 (446)
.+|.+||........-......+....++|++ ..|+..+. +..|++||+.+++.. .+..+.+...++.|+|++
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg---~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDG---KKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCC---CEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCC
Confidence 46999998654433222233345566677653 35555543 347999999888653 333444555688999999
Q ss_pred CeEEEEeeCCC--cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274 203 EWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 280 (446)
Q Consensus 203 ~~~l~S~s~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (446)
+.++++.+.+| .|.+||+.++...+ +
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~-l--------------------------------------------------- 287 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTR-L--------------------------------------------------- 287 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEE-C---------------------------------------------------
Confidence 98766766666 58888876543210 0
Q ss_pred cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCc--EEEEecCcCceeeeeeeEEEeecCC
Q 013274 281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSR--IRLWDVESGRNTLVNFETVRLQTSK 357 (446)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~--i~lWd~~~~~~~~~~~~~~~~~~~~ 357 (446)
..+.+.....+|+|||++|+..+. ++. |.++|+.++..... ......
T Consensus 288 -------------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-----t~~g~~ 337 (433)
T PRK04922 288 -------------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-----TFQGNY 337 (433)
T ss_pred -------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-----ecCCCC
Confidence 011112345689999998876653 444 55667666543221 111223
Q ss_pred CeEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC---CcEEEeCCCCCCC
Q 013274 358 PIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND---RQILVWCPSRHIS 430 (446)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D---~~v~vW~~~~~~~ 430 (446)
.....++|++..++.... ..+.+|++.+++.. .+. +........|||||++|+..+.+ ..|.++++++...
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~ 415 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR 415 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 335688999887765432 25788998777654 333 33345577999999998866553 3477777766543
Q ss_pred CCcCCCc-cCccCCCC
Q 013274 431 DGVDAGP-MQDQDNWS 445 (446)
Q Consensus 431 ~~~~~~~-~~~~~~~~ 445 (446)
..+..++ ......|+
T Consensus 416 ~~l~~~~g~~~~p~ws 431 (433)
T PRK04922 416 QRLVSADGEVREPAWS 431 (433)
T ss_pred EEcccCCCCCCCCccC
Confidence 3333322 22334564
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1e-09 Score=107.95 Aligned_cols=220 Identities=16% Similarity=0.145 Sum_probs=134.9
Q ss_pred CccccEeEEEEeecCCcEEEEEeCC---CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEE--
Q 013274 101 GHKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC-- 175 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~~~l~s~s~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vw-- 175 (446)
.+...+.+..|+| +++.|+..+.+ ..|.+||+.+++........+......++|++. .++++.+.++...+|
T Consensus 193 ~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 193 SSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR--TLAVALSRDGNSQIYTV 269 (427)
T ss_pred cCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC--EEEEEEccCCCceEEEE
Confidence 3455677778887 78888777653 359999999887644333445555667777542 344566677765555
Q ss_pred eCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccc
Q 013274 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLS 254 (446)
Q Consensus 176 d~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (446)
|+.++. ...+..+.+......|+|++++++.++..+|...||.+.... ..+.+
T Consensus 270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l------------------------- 323 (427)
T PRK02889 270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV------------------------- 323 (427)
T ss_pred ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-------------------------
Confidence 555444 455655666667789999999865555556777787653210 00000
Q ss_pred cCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC---
Q 013274 255 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS--- 331 (446)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~--- 331 (446)
. .+........|+|||++|+..+.++
T Consensus 324 ----------------------------------------t-----------~~g~~~~~~~~SpDG~~Ia~~s~~~g~~ 352 (427)
T PRK02889 324 ----------------------------------------T-----------FTGSYNTSPRISPDGKLLAYISRVGGAF 352 (427)
T ss_pred ----------------------------------------e-----------cCCCCcCceEECCCCCEEEEEEccCCcE
Confidence 0 0001122457999999988766554
Q ss_pred cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC----ceEEEEeecCceEEEecccccceEEEEEcCC
Q 013274 332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT----AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ 407 (446)
Q Consensus 332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd 407 (446)
.|.+||+.++...... . ........++|++..++..... .+.+.++ +++....+..+.+.+...+|||-
T Consensus 353 ~I~v~d~~~g~~~~lt--~----~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 353 KLYVQDLATGQVTALT--D----TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEEECCCCCeEEcc--C----CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 5999999876532211 0 1122346788898877665432 2333344 56666677777777888888873
No 224
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.29 E-value=1.7e-10 Score=100.21 Aligned_cols=75 Identities=21% Similarity=0.383 Sum_probs=55.8
Q ss_pred CeEEEEEccCCCEEEEeecC---CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCc
Q 013274 311 AVTGLKVTEDGMYLLSAGSD---SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK 387 (446)
Q Consensus 311 ~v~~l~fs~dg~~l~sgs~D---~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 387 (446)
.++.|.|+|+|++|+.++.+ |.|.+||+.+.+. +.
T Consensus 102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-i~----------------------------------------- 139 (194)
T PF08662_consen 102 PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-IS----------------------------------------- 139 (194)
T ss_pred CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-ee-----------------------------------------
Confidence 46779999999999998754 5699999875321 00
Q ss_pred eEEEecccccceEEEEEcCCCCEEEEeeC------CCcEEEeCCCCCCCCC
Q 013274 388 TCLTFRGHYEYVNCCCFSSQDQELYTGGN------DRQILVWCPSRHISDG 432 (446)
Q Consensus 388 ~~~~l~gH~~~v~~~~fSpd~~~lvtgs~------D~~v~vW~~~~~~~~~ 432 (446)
++ .| ..+++++|||||++|+|++. |+.++||+..+..+..
T Consensus 140 ---~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 140 ---TF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred ---cc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence 00 12 23689999999999998764 8999999988765543
No 225
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1e-09 Score=104.51 Aligned_cols=189 Identities=23% Similarity=0.357 Sum_probs=138.1
Q ss_pred cCCcEEEEEeCCCeEEEEECCCCeeeEEEec----CCceEEeee------ccC-----------CCCceEEEEeeCCCcE
Q 013274 114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM----PGKVYRTAM------SPL-----------AASHMLIAAGTEDVQV 172 (446)
Q Consensus 114 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~----~~~~~~~~~------~~~-----------~~~~~~lasgs~d~~v 172 (446)
+...++|....||.+|+||+..+++...|.. .+......+ +|. ..+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3467899999999999999998876655542 222111111 111 1233568888999999
Q ss_pred EEEeCCCCceeeeee--CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274 173 RLCDIASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS 250 (446)
Q Consensus 173 ~vwd~~~~~~~~~l~--~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (446)
-++++..|+.-..+. .|.+.|.++.++.+- ++|.|++.|+.+..|+......++...
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~-------------------- 141 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWK-------------------- 141 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeec--------------------
Confidence 999999998887776 699999999987654 478999999999999987643322211
Q ss_pred cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC
Q 013274 251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD 330 (446)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D 330 (446)
+-...+.+++++|||+.|++++
T Consensus 142 --------------------------------------------------------~~~~~~~sl~is~D~~~l~~as-- 163 (541)
T KOG4547|consen 142 --------------------------------------------------------EQKPLVSSLCISPDGKILLTAS-- 163 (541)
T ss_pred --------------------------------------------------------cCCCccceEEEcCCCCEEEecc--
Confidence 1122367889999999998764
Q ss_pred CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCC---
Q 013274 331 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ--- 407 (446)
Q Consensus 331 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd--- 407 (446)
++|++||++++ +.+.+|.||.++|.+++|..+
T Consensus 164 ~~ik~~~~~~k---------------------------------------------evv~~ftgh~s~v~t~~f~~~~~g 198 (541)
T KOG4547|consen 164 RQIKVLDIETK---------------------------------------------EVVITFTGHGSPVRTLSFTTLIDG 198 (541)
T ss_pred ceEEEEEccCc---------------------------------------------eEEEEecCCCcceEEEEEEEeccc
Confidence 57999988754 345678899999999999988
Q ss_pred --CCEEE-EeeCCCcEEEeCCC
Q 013274 408 --DQELY-TGGNDRQILVWCPS 426 (446)
Q Consensus 408 --~~~lv-tgs~D~~v~vW~~~ 426 (446)
|.++. +...+.-+.+|-.+
T Consensus 199 ~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 199 IIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cccceeeeccccccceeEEEEE
Confidence 55654 56667888889555
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.24 E-value=1.1e-08 Score=90.69 Aligned_cols=158 Identities=15% Similarity=0.265 Sum_probs=109.9
Q ss_pred cccEeEEEEeecCCcEEEEEeCCCeEEEEECC-CCeeeEEEecCCceE-EeeeccCCCCceEEEE-eeCCCcEEEEeCCC
Q 013274 103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN-CTRVVMNFKMPGKVY-RTAMSPLAASHMLIAA-GTEDVQVRLCDIAS 179 (446)
Q Consensus 103 ~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~las-gs~d~~v~vwd~~~ 179 (446)
..+|.++...+ ++++.. ..+.|.||... ..+.++.+....... -.++.+.. +..+||. |-.-|.|.|-|+..
T Consensus 94 ~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 94 NSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred ccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccceEEEEEhhh
Confidence 45676666643 455444 35689999986 445555444221111 12233322 2344554 44568999999987
Q ss_pred Cce--eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCc-EEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274 180 GAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA-IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG 256 (446)
Q Consensus 180 ~~~--~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~-I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (446)
.+. ...+..|...|.+|+++.+|. ++||+|.-|| |||||..++..+..+..
T Consensus 169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RR------------------------- 222 (346)
T KOG2111|consen 169 TKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRR------------------------- 222 (346)
T ss_pred cCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeec-------------------------
Confidence 654 578899999999999999987 5899999998 99999988765433310
Q ss_pred CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274 257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 336 (446)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW 336 (446)
| .....|.+|+||||+.+|+..|.-|+|+++
T Consensus 223 ----------------------------------------G---------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 223 ----------------------------------------G---------VDRADIYCIAFSPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred ----------------------------------------C---------CchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence 0 001249999999999999999999999999
Q ss_pred ecCc
Q 013274 337 DVES 340 (446)
Q Consensus 337 d~~~ 340 (446)
.++.
T Consensus 254 ~l~~ 257 (346)
T KOG2111|consen 254 SLRD 257 (346)
T ss_pred Eeec
Confidence 8875
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.23 E-value=6.5e-08 Score=92.62 Aligned_cols=291 Identities=16% Similarity=0.162 Sum_probs=162.0
Q ss_pred eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE-eCC
Q 013274 47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-SYD 125 (446)
Q Consensus 47 ~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~-s~D 125 (446)
..+.|++ |++++..++.||.|.++|+.+.+... .+.. | ....++.+++ |+++++++ -.+
T Consensus 40 ~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~---------~i~~-------G--~~~~~i~~s~-DG~~~~v~n~~~ 99 (369)
T PF02239_consen 40 AGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVA---------TIKV-------G--GNPRGIAVSP-DGKYVYVANYEP 99 (369)
T ss_dssp EEEE-TT--SSEEEEEETTSEEEEEETTSSSEEE---------EEE--------S--SEEEEEEE---TTTEEEEEEEET
T ss_pred eEEEecC-CCCEEEEEcCCCeEEEEECCcccEEE---------EEec-------C--CCcceEEEcC-CCCEEEEEecCC
Confidence 3467875 68888889999999999998764211 1110 1 1233455665 78887766 468
Q ss_pred CeEEEEECCCCeeeEEEecCC--------ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee-eeeCCCCCeEEE
Q 013274 126 HYVKVWDTNCTRVVMNFKMPG--------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTV 196 (446)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~-~l~~h~~~v~sv 196 (446)
+++.++|.++.+++..++..+ .+..+..++.. ..++++--..+.|-+.|..+...+. ....-.......
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~--~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR--PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS--SEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecCCC--CEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 999999999999888776432 22233333332 2344444445778787877654332 222234456678
Q ss_pred EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV 276 (446)
Q Consensus 197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (446)
.|+|++++++++...++.|-++|+.+++....++.....
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p----------------------------------------- 216 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP----------------------------------------- 216 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB-----------------------------------------
T ss_pred ccCcccceeeecccccceeEEEeeccceEEEEeeccccc-----------------------------------------
Confidence 899999988887778889999999887665544321110
Q ss_pred eecccceeecCCccccccCCCccccccccccc--ccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274 277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH--YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 354 (446)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~ 354 (446)
..+.... -.| .+++.. ....+...++.-....+.+||..+-+. ...+..
T Consensus 217 ---------~~~~~~~-------------~php~~g~vw~--~~~~~~~~~~~ig~~~v~v~d~~~wkv----v~~I~~- 267 (369)
T PF02239_consen 217 ---------HPGPGAN-------------FPHPGFGPVWA--TSGLGYFAIPLIGTDPVSVHDDYAWKV----VKTIPT- 267 (369)
T ss_dssp ---------EETTEEE-------------EEETTTEEEEE--EEBSSSSEEEEEE--TTT-STTTBTSE----EEEEE--
T ss_pred ---------ccccccc-------------ccCCCcceEEe--eccccceecccccCCccccchhhcCeE----EEEEEC-
Confidence 0000000 011 123332 223344443333344677788776442 122222
Q ss_pred cCCCeEEEEcCCCcEEEEeC---C--CceEEEEeecCceEEEecccc-cceEEEEEcCCCCEEEEeeCCC--cEEEeCCC
Q 013274 355 TSKPIQLATTQDPAVVFVPC---M--TAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDR--QILVWCPS 426 (446)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~---~--~~~~~~d~~~~~~~~~l~gH~-~~v~~~~fSpd~~~lvtgs~D~--~v~vW~~~ 426 (446)
.+.+.-+..+|++..+++.. . ..+.++|..+.+...++.... ..+..+.|++||+.+.-...|+ .|.|+|..
T Consensus 268 ~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 268 QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 23446678889998888871 1 478999999988877775333 3689999999999866444433 69999887
Q ss_pred CCC
Q 013274 427 RHI 429 (446)
Q Consensus 427 ~~~ 429 (446)
+-.
T Consensus 348 Tl~ 350 (369)
T PF02239_consen 348 TLK 350 (369)
T ss_dssp TTE
T ss_pred CcE
Confidence 654
No 228
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.22 E-value=5.7e-10 Score=98.62 Aligned_cols=221 Identities=14% Similarity=0.147 Sum_probs=153.7
Q ss_pred ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe---eeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeC-C
Q 013274 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR---VVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-A 178 (446)
Q Consensus 104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~-~ 178 (446)
.+|+|.+|.+ +.+.+|.+-..+.|.|+.....+ ...++.. ...+..+.+.+.. ..|++++.|..-++|.. .
T Consensus 11 ~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s---nrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 11 EPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS---NRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred CceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC---CceeEccCCCCccccccCC
Confidence 4688888886 78899999999999999877655 3334432 3446667777654 46899999999999998 5
Q ss_pred CCc--eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274 179 SGA--ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG 256 (446)
Q Consensus 179 ~~~--~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (446)
.++ +.-.|..++..+++|.|+|... .|+.||.-..|-+|=+......=
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWW----------------------------- 136 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWW----------------------------- 136 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEeccccee-----------------------------
Confidence 553 3445677899999999999876 58999998899988654211000
Q ss_pred CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274 257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 336 (446)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW 336 (446)
.....-+.+.+.|++++|+|++-+|++|+.|+.+|++
T Consensus 137 -------------------------------------------VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVf 173 (361)
T KOG1523|consen 137 -------------------------------------------VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVF 173 (361)
T ss_pred -------------------------------------------hhhhhCCccccceeeeeccCCcceecccccCcceeEE
Confidence 0000012345569999999999999999999999999
Q ss_pred ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeC
Q 013274 337 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 416 (446)
Q Consensus 337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~ 416 (446)
...-. .++. .... +|=+.. +-=|.++.++..--+.|..+.|||+|..|+=.+.
T Consensus 174 SayIK-----~Vde---kpap------~pWgsk-------------~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 174 SAYIK-----GVDE---KPAP------TPWGSK-------------MPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred EEeee-----cccc---CCCC------CCCccC-------------CcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC
Confidence 64311 0111 0000 000000 0013344455556789999999999999999999
Q ss_pred CCcEEEeCCCCC
Q 013274 417 DRQILVWCPSRH 428 (446)
Q Consensus 417 D~~v~vW~~~~~ 428 (446)
|.++.+=+...+
T Consensus 227 ds~v~~~da~~p 238 (361)
T KOG1523|consen 227 DSTVSFVDAAGP 238 (361)
T ss_pred CCceEEeecCCC
Confidence 999999887655
No 229
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.6e-10 Score=107.40 Aligned_cols=260 Identities=18% Similarity=0.236 Sum_probs=170.5
Q ss_pred ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec--CCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (446)
Q Consensus 99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd 176 (446)
+.+|++.|..+.|.. .|+.++|||+|..|.+||-..+.....|.. ...++...|.|...+. -+++.+.|+.|++=.
T Consensus 138 L~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~-ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR-TIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc-CceeccccCceeeee
Confidence 468999999988875 789999999999999999887777766642 2234555577765443 467888999999887
Q ss_pred CCCCce---eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274 177 IASGAI---SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL 253 (446)
Q Consensus 177 ~~~~~~---~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (446)
+....+ ...+..|.++|.-++.-|+..+.|.|+++|+.+.-.|+++......+..
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c---------------------- 273 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC---------------------- 273 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee----------------------
Confidence 643322 3566789999999999999988899999999999999986532111100
Q ss_pred ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccc---cCeEEEEEccCCC-EEEEeec
Q 013274 254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY---GAVTGLKVTEDGM-YLLSAGS 329 (446)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~fs~dg~-~l~sgs~ 329 (446)
+ ..+. -....++..|-.. ++++|+.
T Consensus 274 ---------------------------------------r------------~~~~~~~v~L~~Ia~~P~nt~~faVgG~ 302 (559)
T KOG1334|consen 274 ---------------------------------------R------------EADEKERVGLYTIAVDPRNTNEFAVGGS 302 (559)
T ss_pred ---------------------------------------e------------ccCCccceeeeeEecCCCCccccccCCh
Confidence 0 0000 1246677778665 7899999
Q ss_pred CCcEEEEecCcCcee-----eeeee--EEE-eecCCCeEEEEcCCCcEEEEe-CCCceEEEEe--ecC----------ce
Q 013274 330 DSRIRLWDVESGRNT-----LVNFE--TVR-LQTSKPIQLATTQDPAVVFVP-CMTAVKAFDI--WSG----------KT 388 (446)
Q Consensus 330 D~~i~lWd~~~~~~~-----~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~--~~~----------~~ 388 (446)
|..+|+||...-+.. +..+- .+. ........++++.++.-+.++ ....+.++.- ..| ..
T Consensus 303 dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~ 382 (559)
T KOG1334|consen 303 DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQY 382 (559)
T ss_pred hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhc
Confidence 999999998752211 00000 000 011223345666554433333 3334455521 112 12
Q ss_pred -EEEecccccc--eEEEEE-cCCCCEEEEeeCCCcEEEeCCCCCCCCCc
Q 013274 389 -CLTFRGHYEY--VNCCCF-SSQDQELYTGGNDRQILVWCPSRHISDGV 433 (446)
Q Consensus 389 -~~~l~gH~~~--v~~~~f-Spd~~~lvtgs~D~~v~vW~~~~~~~~~~ 433 (446)
...|.||.+. |-++-| -|...+++|||.=|.|.||+-.+...-++
T Consensus 383 ~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 383 VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred cchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence 2348899754 445544 58899999999999999999886654433
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.20 E-value=2.6e-08 Score=95.30 Aligned_cols=274 Identities=17% Similarity=0.113 Sum_probs=156.4
Q ss_pred EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe
Q 013274 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR 137 (446)
Q Consensus 58 ~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~ 137 (446)
++++-..+++|.|.|.++.+.. ..+. .+ +.+.....+++|++++++++.|+.|.++|+.+.+
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~------------~~i~----~~--~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~ 69 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVV------------ARIP----TG--GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK 69 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEE------------EEEE-----S--TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS
T ss_pred EEEEecCCCEEEEEECCCCeEE------------EEEc----CC--CCceeEEEecCCCCEEEEEcCCCeEEEEECCccc
Confidence 4566778999999998765421 0110 01 1222334445589999999999999999999999
Q ss_pred eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC-------CCCeEEEEEecCCCeEEEEee
Q 013274 138 VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH-------RDGIMTVEWSTSSEWILVTGG 210 (446)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h-------~~~v~sv~~s~~~~~~l~S~s 210 (446)
.+.++........+++++++. .++++...++.+.++|.++.+.++.++.. ...+.+|..+|..+.++++--
T Consensus 70 ~v~~i~~G~~~~~i~~s~DG~--~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 70 VVATIKVGGNPRGIAVSPDGK--YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp EEEEEE-SSEEEEEEE--TTT--EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred EEEEEecCCCcceEEEcCCCC--EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 999998877788888887543 34445557899999999999988887643 345678888888775444433
Q ss_pred CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcc
Q 013274 211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV 290 (446)
Q Consensus 211 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (446)
+-+.|.+-|....+.+..-
T Consensus 148 d~~~I~vVdy~d~~~~~~~------------------------------------------------------------- 166 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVT------------------------------------------------------------- 166 (369)
T ss_dssp TTTEEEEEETTTSSCEEEE-------------------------------------------------------------
T ss_pred cCCeEEEEEecccccccee-------------------------------------------------------------
Confidence 3466666665442211000
Q ss_pred ccccCCCcccccccccccccCeEEEEEccCCCEEEE-eecCCcEEEEecCcCceeeeeeeEEEeecCCCeE---------
Q 013274 291 RQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ--------- 360 (446)
Q Consensus 291 ~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s-gs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~--------- 360 (446)
. ...........|+|+|+|++. ...+..|-++|.++++.. ..+.........+..
T Consensus 167 --~------------i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v-~~i~~g~~p~~~~~~~~php~~g~ 231 (369)
T PF02239_consen 167 --T------------IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV-ALIDTGKKPHPGPGANFPHPGFGP 231 (369)
T ss_dssp --E------------EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE-EEEE-SSSBEETTEEEEEETTTEE
T ss_pred --e------------ecccccccccccCcccceeeecccccceeEEEeeccceEE-EEeeccccccccccccccCCCcce
Confidence 0 000012345679999998755 456678999998876432 111110000001111
Q ss_pred -EEEcCCCcE-EEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEe----eCCCcEEEeCCCCC
Q 013274 361 -LATTQDPAV-VFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG----GNDRQILVWCPSRH 428 (446)
Q Consensus 361 -~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtg----s~D~~v~vW~~~~~ 428 (446)
......+.. +...+.+.+.+||..+++.++++....+. .-+.-+||+++|... ....+|.|+|..+-
T Consensus 232 vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 232 VWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp EEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred EEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 111111111 12223345667888889999999987777 667779999999987 45588999998764
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.4e-08 Score=100.28 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=78.6
Q ss_pred CccccEeEEEEeecCCcEEEEEeC---CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEE
Q 013274 101 GHKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLC 175 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~~~l~s~s~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vw 175 (446)
.|...+.+..|+| |++.|+..+. +..|.+||+.+++........+......++|++ ..++++.+.++ .|++|
T Consensus 199 ~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG--~~la~~~~~~g~~~Iy~~ 275 (435)
T PRK05137 199 DGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG--RKVVMSLSQGGNTDIYTM 275 (435)
T ss_pred cCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCC--CEEEEEEecCCCceEEEE
Confidence 4556788888887 7888877664 468999999888654333344555566777753 23445555555 47888
Q ss_pred eCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCC--cEEEEEccC
Q 013274 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--AIRFWDIRR 222 (446)
Q Consensus 176 d~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg--~I~iWd~~~ 222 (446)
|++++.. ..+..+.+......|+|++++++.+...+| .|.+||+..
T Consensus 276 d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 276 DLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred ECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence 9988765 456666666778999999997654444444 455666543
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.19 E-value=1.9e-10 Score=108.12 Aligned_cols=175 Identities=18% Similarity=0.375 Sum_probs=108.0
Q ss_pred ceEEEEeeCCCcEEEEeCCCCceeeee--eC--CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccccc
Q 013274 160 HMLIAAGTEDVQVRLCDIASGAISQTL--SG--HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ 235 (446)
Q Consensus 160 ~~~lasgs~d~~v~vwd~~~~~~~~~l--~~--h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~ 235 (446)
..-++.|-.-+.|.+.|....+..+-+ .. ....|+++.|.|.++.+++.+-++|.+.+||.....
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~----------- 253 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC----------- 253 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-----------
Confidence 344667777788988887654322211 11 246799999999988888888999999999863210
Q ss_pred ccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEE
Q 013274 236 LGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL 315 (446)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 315 (446)
+...+.... ...+..+.+... + .... ..+..++.--.+.|+..
T Consensus 254 -~~t~p~~~~------------------------~k~~~~f~i~t~-k-----sk~~------rNPv~~w~~~~g~in~f 296 (636)
T KOG2394|consen 254 -GATAPSYQA------------------------LKDGDQFAILTS-K-----SKKT------RNPVARWHIGEGSINEF 296 (636)
T ss_pred -cCCCCcccc------------------------cCCCCeeEEeee-e-----cccc------CCccceeEeccccccce
Confidence 000000000 000000000000 0 0000 00111122224579999
Q ss_pred EEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEeccc
Q 013274 316 KVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGH 395 (446)
Q Consensus 316 ~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH 395 (446)
+|+|||++||+-|.||.+||+|..+..- . ..+..-
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eL--l-------------------------------------------g~mkSY 331 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQEL--L-------------------------------------------GVMKSY 331 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHHHH--H-------------------------------------------HHHHhh
Confidence 9999999999999999999999876321 0 001112
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 396 YEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 396 ~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
-+...||+|||||+++|||++|-.|.||..+.
T Consensus 332 FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 332 FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 35689999999999999999999999998863
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=2.4e-08 Score=98.29 Aligned_cols=206 Identities=14% Similarity=0.162 Sum_probs=123.4
Q ss_pred CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC---CCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (446)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~---d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~ 202 (446)
..|.+||.............+.+....++|++ ..|+..+. ...|++||+.+++.. .+....+.+.+.+|+|++
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG---~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDG---TKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCC---CEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCC
Confidence 46777777543322222334455667777754 34555443 246999999988653 344444566789999999
Q ss_pred CeEEEEeeCCCcEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274 203 EWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 281 (446)
Q Consensus 203 ~~~l~S~s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (446)
+.++++.+.+|...||.+.... ..+.
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~----------------------------------------------------- 278 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSGLRR----------------------------------------------------- 278 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCCcEE-----------------------------------------------------
Confidence 9876678888888888653210 0000
Q ss_pred ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCcEEEEecC--cCceeeeeeeEEEeecCCC
Q 013274 282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVE--SGRNTLVNFETVRLQTSKP 358 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~i~lWd~~--~~~~~~~~~~~~~~~~~~~ 358 (446)
...+.+......|+|||++|+..+. ++...+|.+. ++...... ......
T Consensus 279 -----------------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-----~~g~~~ 330 (427)
T PRK02889 279 -----------------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-----FTGSYN 330 (427)
T ss_pred -----------------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-----cCCCCc
Confidence 0011122345679999998875543 5677777553 33322111 112223
Q ss_pred eEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCC
Q 013274 359 IQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 418 (446)
Q Consensus 359 ~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~ 418 (446)
....++|++..++.... ..+.+||+.+++... +..+ .......|+|||+.|+..+.++
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecC
Confidence 34678899887765432 257889987776543 3222 2346789999999988766544
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.11 E-value=1.1e-10 Score=107.71 Aligned_cols=185 Identities=15% Similarity=0.208 Sum_probs=142.5
Q ss_pred cCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274 114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (446)
Q Consensus 114 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v 193 (446)
.+|..++-|+.-|.|-.+|-.++.+...+..-..+..+.|... ..++|++ +...++|||- .|..+..++.| ..|
T Consensus 139 rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHn---eq~~AVA-QK~y~yvYD~-~GtElHClk~~-~~v 212 (545)
T KOG1272|consen 139 RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHN---EQFFAVA-QKKYVYVYDN-NGTELHCLKRH-IRV 212 (545)
T ss_pred CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcc---hHHHHhh-hhceEEEecC-CCcEEeehhhc-Cch
Confidence 4788999999999999999999998887777667777776552 3355554 5678999994 56777777766 568
Q ss_pred EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG 273 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (446)
..+.|-|.. ++|++++..|-++.-|+..++.+..+.
T Consensus 213 ~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~------------------------------------------- 248 (545)
T KOG1272|consen 213 ARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIR------------------------------------------- 248 (545)
T ss_pred hhhcccchh-heeeecccCCceEEEeechhhhhHHHH-------------------------------------------
Confidence 899999975 578999999999988987765322110
Q ss_pred CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEe
Q 013274 274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL 353 (446)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~ 353 (446)
...+.+..|.-+|-+..+-+|...|+|-+|...+..+
T Consensus 249 ---------------------------------t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP---------- 285 (545)
T KOG1272|consen 249 ---------------------------------TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP---------- 285 (545)
T ss_pred ---------------------------------ccCCccchhhcCCccceEEEcCCCceEEecCCCCcch----------
Confidence 0123456666778788888999999999998765321
Q ss_pred ecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 354 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
+..+..|.++|.++++.++|++.||.+.|+.++|||+.
T Consensus 286 -----------------------------------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 286 -----------------------------------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred -----------------------------------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeec
Confidence 22345699999999999999999999999999999986
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.08 E-value=2.4e-08 Score=86.85 Aligned_cols=112 Identities=18% Similarity=0.376 Sum_probs=81.2
Q ss_pred cccEeEEEEeecCCcEEE--EEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee---CCCcEEEEeC
Q 013274 103 KYAISSAIWYPVDTGLFV--TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT---EDVQVRLCDI 177 (446)
Q Consensus 103 ~~~V~~~~~~~~~~~~l~--s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs---~d~~v~vwd~ 177 (446)
.+.|.++.|+| +++.|| +|..+..|.+||++ ++.+..+. ......+.++|.+ .+++.++ ..|.|.+||+
T Consensus 59 ~~~I~~~~WsP-~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G---~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 59 EGPIHDVAWSP-NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDG---RFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred CCceEEEEECc-CCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCC---CEEEEEEccCCCcEEEEEEC
Confidence 44699999998 566654 34567899999997 56666654 3456778888864 3555554 3467999999
Q ss_pred CCCceeeeeeCCCCCeEEEEEecCCCeEEEEee-----CCCcEEEEEccC
Q 013274 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG-----CDGAIRFWDIRR 222 (446)
Q Consensus 178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s-----~Dg~I~iWd~~~ 222 (446)
++.+.+.... | ..+..+.|+|+|++++.+.+ .|+.++||+...
T Consensus 133 ~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 133 RKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 9888776664 3 34789999999998544444 389999999853
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.07 E-value=2.5e-06 Score=81.58 Aligned_cols=249 Identities=15% Similarity=0.199 Sum_probs=146.9
Q ss_pred EEEEeecCCcEEEEEeC----CCeEEEEECCCC--ee--eEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274 108 SAIWYPVDTGLFVTGSY----DHYVKVWDTNCT--RV--VMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (446)
Q Consensus 108 ~~~~~~~~~~~l~s~s~----D~~i~iWd~~~~--~~--~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~ 178 (446)
.+.++| ++++|++... ++.|..|++... ++ +..... ......+++.+.. ..++++-..++.|.+++++
T Consensus 41 ~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g--~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 41 WLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDG--RFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp CEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTS--SEEEEEETTTTEEEEEEEC
T ss_pred eEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCC--CEEEEEEccCCeEEEEEcc
Confidence 345555 6677777766 579999988653 33 233332 2233456665542 3445555568999999998
Q ss_pred C-Cceeee--eeC-----------CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCce-eEEeecccccccCCCccc
Q 013274 179 S-GAISQT--LSG-----------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLL 243 (446)
Q Consensus 179 ~-~~~~~~--l~~-----------h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~-~~~~~~~~~~~~~~~~~~ 243 (446)
. +.+... +.. -....-++.|+|++++++++.-....|.+|++..... +....
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~------------- 184 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD------------- 184 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE-------------
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee-------------
Confidence 7 433221 111 1234678999999998777655566899999865321 10000
Q ss_pred ccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCE
Q 013274 244 KRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY 323 (446)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~ 323 (446)
.+ .. .....-+.++|+|+|++
T Consensus 185 ---------------------------------------~~--------~~------------~~G~GPRh~~f~pdg~~ 205 (345)
T PF10282_consen 185 ---------------------------------------SI--------KV------------PPGSGPRHLAFSPDGKY 205 (345)
T ss_dssp ---------------------------------------EE--------EC------------STTSSEEEEEE-TTSSE
T ss_pred ---------------------------------------cc--------cc------------ccCCCCcEEEEcCCcCE
Confidence 00 00 00122677899999987
Q ss_pred E-EEeecCCcEEEEecC--cCceeeee-eeEEEee--c-CCCeEEEEcCCCcEEEEeC--CCceEEEEee--cCce--EE
Q 013274 324 L-LSAGSDSRIRLWDVE--SGRNTLVN-FETVRLQ--T-SKPIQLATTQDPAVVFVPC--MTAVKAFDIW--SGKT--CL 390 (446)
Q Consensus 324 l-~sgs~D~~i~lWd~~--~~~~~~~~-~~~~~~~--~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~--~~~~--~~ 390 (446)
+ ++.-.+++|.++++. ++...... +..+... . ..+..++++|++..+++.. .+.+.++++. ++++ +.
T Consensus 206 ~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 206 AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred EEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 6 566778889999988 33221111 1111111 1 1356688999999888864 4688999993 3443 33
Q ss_pred EecccccceEEEEEcCCCCEEEEee-CCCcEEEeCC--CCCCCC
Q 013274 391 TFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVWCP--SRHISD 431 (446)
Q Consensus 391 ~l~gH~~~v~~~~fSpd~~~lvtgs-~D~~v~vW~~--~~~~~~ 431 (446)
.+...-.....++|+|||++|+.+. .++.|.+|+. +++.+.
T Consensus 286 ~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 286 TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 4444445589999999999988655 6778999965 455443
No 237
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.05 E-value=9.1e-07 Score=83.08 Aligned_cols=268 Identities=12% Similarity=0.076 Sum_probs=155.3
Q ss_pred CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee---------CCCcEEEEeCCCCceeeeeeCCCC-----
Q 013274 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT---------EDVQVRLCDIASGAISQTLSGHRD----- 191 (446)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs---------~d~~v~vwd~~~~~~~~~l~~h~~----- 191 (446)
++|.+.|.++++.+..+.......-+ ++++. ..+.++.+ .+..|.+||+.+.+.+..+.-..+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg--~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDG--SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCC--CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 78999999999988887754333333 66653 23444444 578999999999999888763222
Q ss_pred --CeEEEEEecCCCeEEEEe-eCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccc
Q 013274 192 --GIMTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQK 268 (446)
Q Consensus 192 --~v~sv~~s~~~~~~l~S~-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (446)
.-...+++|++++++++- +.+..|-+.|+.+.+.+..+.... +..+.. +... ....
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-----~~~vy~---------t~e~-------~~~~ 162 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-----CYHIFP---------TAND-------TFFM 162 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-----CcEEEE---------ecCC-------ccEE
Confidence 234778999999876554 347999999999998877665311 000000 0000 0000
Q ss_pred cccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCCcEEEEecCcCceee-e
Q 013274 269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTL-V 346 (446)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~~i~lWd~~~~~~~~-~ 346 (446)
...++..... .+...+..... ...+...........+ .|++ ||+++..... |+|.+.|+....... .
T Consensus 163 ~~~Dg~~~~v----~~d~~g~~~~~--~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 163 HCRDGSLAKV----GYGTKGNPKIK--PTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP 231 (352)
T ss_pred EeecCceEEE----EecCCCceEEe--eeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecc
Confidence 0000000000 00000000000 0000000000000111 3455 8888766555 999999976543211 1
Q ss_pred eeeEE-------EeecCCCeEEEEcCCCcEEEEeC-----------CCceEEEEeecCceEEEecccccceEEEEEcCCC
Q 013274 347 NFETV-------RLQTSKPIQLATTQDPAVVFVPC-----------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD 408 (446)
Q Consensus 347 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~ 408 (446)
.+... ....+....+++++++..+++.+ .+.+.++|..+++....+.. ...++.++||||+
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dg 310 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDA 310 (352)
T ss_pred eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCC
Confidence 11111 12233344588999988888843 14688899999998887764 2368999999999
Q ss_pred C-EEEEee-CCCcEEEeCCCCCC
Q 013274 409 Q-ELYTGG-NDRQILVWCPSRHI 429 (446)
Q Consensus 409 ~-~lvtgs-~D~~v~vW~~~~~~ 429 (446)
+ +|++.. .++.|.|.|..+.+
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCCe
Confidence 9 888655 67889999998774
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.05 E-value=1.5e-07 Score=92.79 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=73.8
Q ss_pred ccccEeEEEEeecCCcEEEEEeCC---CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEEe
Q 013274 102 HKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCD 176 (446)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~s~s~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vwd 176 (446)
+...+.+..|+| ++++|+.++.+ ..|.+||+.+++........+......++++. ..++++.+.++ .|++||
T Consensus 188 ~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 188 SREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG--SKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred CCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCC--CEEEEEECCCCCccEEEEE
Confidence 333455667776 78888776654 48999999987654433444555556777653 23444544443 689999
Q ss_pred CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCc--EEEEEccC
Q 013274 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDIRR 222 (446)
Q Consensus 177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~--I~iWd~~~ 222 (446)
+.++.. ..+..+........|+|++++++++...++. |.++|+.+
T Consensus 265 ~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 265 LDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred CCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 988754 3444455555677899999876555544444 55555543
No 239
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.04 E-value=3.8e-08 Score=94.06 Aligned_cols=163 Identities=14% Similarity=0.128 Sum_probs=109.3
Q ss_pred cCCCCEEEEeeCCCcEEEEEcccCcCCC---CCCccccccce-----EEeccccccCccccEeEEE---EeecCCcEEEE
Q 013274 53 LTEERYLLSGASDSSVAVYDVQRATDYE---GGGHIAKHRSV-----FVVDKQHEHGHKYAISSAI---WYPVDTGLFVT 121 (446)
Q Consensus 53 ~~~~~~l~s~s~Dg~i~lWd~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~gh~~~V~~~~---~~~~~~~~l~s 121 (446)
|+...++|....||.+++||..+++... +..++.+ .++ +..... ...+.+.. -...+...++=
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~-t~~~~~w~L~~~~s-----~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG-TCTYTKWGLSADYS-----PMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccC-cceeEEEEEEeccc-----hHHHHhHHHHhhccCCceEEEe
Confidence 4456799999999999999987765321 1111100 000 000000 00000000 01124456777
Q ss_pred EeCCCeEEEEECCCCeeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 122 GSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 122 ~s~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
|-..|.|.++++..++...++... +.+..+.+.. ..-.|.+++.|..+..|+......+......+..+.++..
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~---~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ---RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc---ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEE
Confidence 788899999999999988877643 3344444332 3346889999999999999999999999999999999999
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCceeE
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAGCFR 227 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~ 227 (446)
+|+++ ++++++ ++|++||+.+.+.+.
T Consensus 153 s~D~~-~l~~as--~~ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 153 SPDGK-ILLTAS--RQIKVLDIETKEVVI 178 (541)
T ss_pred cCCCC-EEEecc--ceEEEEEccCceEEE
Confidence 99987 567776 599999998766443
No 240
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=4.3e-08 Score=88.34 Aligned_cols=247 Identities=18% Similarity=0.284 Sum_probs=154.8
Q ss_pred cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec--CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC--
Q 013274 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-- 180 (446)
Q Consensus 105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-- 180 (446)
.+..++|++. --.+|++..|-.||++|-+. ++...++. ...+.++++-|.... -|+.|+.. -|.+|.....
T Consensus 100 dlr~~aWhqH-~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas--elavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 100 DLRGVAWHQH-IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS--ELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred ceeeEeechh-hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc--eeeeeecc-eeEEEEcCcccc
Confidence 4555677662 33578999999999999776 43333332 345778888887654 67777754 4889976421
Q ss_pred --c--------e--eeeeeCCCCCeEEEEEecCCCeEEEEeeC-CCcEEEEEccCCceeEEeecccccccCCCcccccce
Q 013274 181 --A--------I--SQTLSGHRDGIMTVEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKV 247 (446)
Q Consensus 181 --~--------~--~~~l~~h~~~v~sv~~s~~~~~~l~S~s~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (446)
. . +..-+|| .+|+++.|.+++. .+++++- |..|+|||..++.+...+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~------------------ 234 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLI------------------ 234 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccc------------------
Confidence 1 1 1122455 6899999999987 4677774 678999998875432110
Q ss_pred eeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe
Q 013274 248 SISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA 327 (446)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg 327 (446)
. -.-+.++-|.|||||.+|..+
T Consensus 235 ---------------------------------------------------------~-~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 235 ---------------------------------------------------------P-KGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred ---------------------------------------------------------c-cCCCceeeEEEcCCCCEEEEe
Confidence 0 002347889999999999999
Q ss_pred ecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeec-Cc--------------eEEEe
Q 013274 328 GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWS-GK--------------TCLTF 392 (446)
Q Consensus 328 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~--------------~~~~l 392 (446)
+-|+..++|+....... +.-....+.....+.+|++..+...+...-+++.+.- ++ +...|
T Consensus 257 t~davfrlw~e~q~wt~----erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL 332 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTK----ERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADL 332 (445)
T ss_pred cccceeeeehhccccee----cceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccc
Confidence 99999999965432111 1111223345557788888887777666555554421 10 01111
Q ss_pred ------cc---cccceEEEEEcCCCCEEEEeeCC--------CcEEEeCCCCC-----CCCCcCCCcc
Q 013274 393 ------RG---HYEYVNCCCFSSQDQELYTGGND--------RQILVWCPSRH-----ISDGVDAGPM 438 (446)
Q Consensus 393 ------~g---H~~~v~~~~fSpd~~~lvtgs~D--------~~v~vW~~~~~-----~~~~~~~~~~ 438 (446)
.+ --+++.+++|-|.|.+||.-=.. ..|.+|+.... ..+|.+.|.+
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~ 400 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY 400 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC
Confidence 11 13678899999999999853222 23566665433 1345666654
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.03 E-value=1.3e-07 Score=93.10 Aligned_cols=216 Identities=13% Similarity=0.102 Sum_probs=126.8
Q ss_pred CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC---CcEEEEeCCCCceeeeeeCCCCCeEEEEEecC
Q 013274 125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---VQVRLCDIASGAISQTLSGHRDGIMTVEWSTS 201 (446)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d---~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~ 201 (446)
...|.++|........-......+....+++++ ..++..+.+ ..|++||+.++... .+..+.+.+.++.|+|+
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg---~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spD 244 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDG---QKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPD 244 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCC---CEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCC
Confidence 346888887644433322333345566677653 355554432 47999999988643 33445566778999999
Q ss_pred CCeEEEEeeCCC--cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeec
Q 013274 202 SEWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS 279 (446)
Q Consensus 202 ~~~~l~S~s~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (446)
++.++++.+.++ .|.+||+.++.... +
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~-l-------------------------------------------------- 273 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTR-L-------------------------------------------------- 273 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEE-C--------------------------------------------------
Confidence 987666666555 47777775432100 0
Q ss_pred ccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CC--cEEEEecCcCceeeeeeeEEEeecC
Q 013274 280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTS 356 (446)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~--~i~lWd~~~~~~~~~~~~~~~~~~~ 356 (446)
..+.+......|+|||++|+..+. ++ .|.++|+.+++... +.....
T Consensus 274 --------------------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-----l~~~~~ 322 (417)
T TIGR02800 274 --------------------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-----LTFRGG 322 (417)
T ss_pred --------------------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-----eecCCC
Confidence 001111234578999998876554 33 57777877654321 111222
Q ss_pred CCeEEEEcCCCcEEEEeCCC----ceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCc---EEEeCCCCC
Q 013274 357 KPIQLATTQDPAVVFVPCMT----AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ---ILVWCPSRH 428 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~---v~vW~~~~~ 428 (446)
....+.+++++..++..... .+.++|+.++.. ..+..+ ......+|+||+++|+..+.++. +.+.+.+..
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 34456788888776665432 577788776543 333322 23456689999999987776543 444455543
No 242
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=2.1e-09 Score=101.44 Aligned_cols=174 Identities=18% Similarity=0.246 Sum_probs=116.5
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+.||+..|..++.- ++++-++|+|.|++|++|.++..-+.. ....+ +.+.+.|+..|.++-+.. +...
T Consensus 731 f~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~-----~tsaC-----QfTY~aHkk~i~~igfL~-~lr~ 798 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEI-----GTSAC-----QFTYQAHKKPIHDIGFLA-DLRS 798 (1034)
T ss_pred ccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCcc-----cccee-----eeEhhhccCcccceeeee-ccce
Confidence 67999999998764 456678899999999999986532211 11111 123457999999888765 3344
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee-----eCCC
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-----SGHR 190 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l-----~~h~ 190 (446)
++ |-|+-|.+||.=-++++.... -.+....+.+.+.-..+.++|.++...+|+++|.+.......+ .+.+
T Consensus 799 i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 799 IA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred ee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 54 567899999965444433221 1111111222222123345555578899999999988755443 4567
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeE
Q 013274 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR 227 (446)
Q Consensus 191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~ 227 (446)
+.+.+++..|.|++ ++.+=..|.|.+.|.|+++.+.
T Consensus 877 a~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNK-LAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred hheeEEEeccCcch-hhHHhcCCcEEEEecCCCceec
Confidence 78999999999987 6777788999999999987543
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=2.4e-07 Score=91.58 Aligned_cols=216 Identities=18% Similarity=0.227 Sum_probs=124.7
Q ss_pred cccEeEEEEeecCCcEEEEEeCC-C--eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCc--EEEEeC
Q 013274 103 KYAISSAIWYPVDTGLFVTGSYD-H--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ--VRLCDI 177 (446)
Q Consensus 103 ~~~V~~~~~~~~~~~~l~s~s~D-~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~--v~vwd~ 177 (446)
...+.+..|+| |++.|+..+.+ + .|.+||+.+++........+......++|++. .++++.+.++. |+++|+
T Consensus 217 ~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 217 PEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGK--KLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCC--EEEEEEeCCCCeEEEEEEC
Confidence 33455667877 77777765543 3 58888998876533223334444556777532 34445556664 888899
Q ss_pred CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEE--EccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW--DIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA 255 (446)
Q Consensus 178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (446)
++++. ..+..+........|+|++++++++...++...+| |+.+++..+..
T Consensus 294 ~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-------------------------- 346 (448)
T PRK04792 294 ATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-------------------------- 346 (448)
T ss_pred CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe--------------------------
Confidence 88764 44555656667889999999876666555554554 44332210000
Q ss_pred CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCc--
Q 013274 256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSR-- 332 (446)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~-- 332 (446)
..++ .....+|+|||++|+-.+. ++.
T Consensus 347 -------------------------------------------------~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~ 375 (448)
T PRK04792 347 -------------------------------------------------FEGE--QNLGGSITPDGRSMIMVNRTNGKFN 375 (448)
T ss_pred -------------------------------------------------cCCC--CCcCeeECCCCCEEEEEEecCCceE
Confidence 0000 1123479999998766544 443
Q ss_pred EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-C---ceEEEEeecCceEEEecccccceEEEEEcC
Q 013274 333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-T---AVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 406 (446)
Q Consensus 333 i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp 406 (446)
|.++|+.++..... .. ........++|++..++.... . .+.+++. +++....+..+.+.+...+|||
T Consensus 376 I~~~dl~~g~~~~l--t~----~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 376 IARQDLETGAMQVL--TS----TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEEECCCCCeEEc--cC----CCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 44567776643221 10 111123467888877655432 1 2344454 5666677777777778888887
No 244
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=8.3e-07 Score=96.04 Aligned_cols=255 Identities=15% Similarity=0.208 Sum_probs=152.5
Q ss_pred EEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCC---------------ceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274 109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---------------KVYRTAMSPLAASHMLIAAGTEDVQVR 173 (446)
Q Consensus 109 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~lasgs~d~~v~ 173 (446)
+++.+.++.++++-+..+.|++||... ..+..+...+ ....+++.+. ++.++++-..++.|+
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHALR 649 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCceEE
Confidence 444444566788888889999999864 4333332211 1233444332 233445555567899
Q ss_pred EEeCCCCceeeeeeCC-----------------CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccc
Q 013274 174 LCDIASGAISQTLSGH-----------------RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL 236 (446)
Q Consensus 174 vwd~~~~~~~~~l~~h-----------------~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~ 236 (446)
++|+.++. +.++.+- -..-..|+|+|++..++++.+.++.|++||..++... .+......
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~- 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE- 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc-
Confidence 99987764 3333210 0123578999965667788888999999998765321 11100000
Q ss_pred cCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEE
Q 013274 237 GRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK 316 (446)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 316 (446)
...+ +.. ...........|+
T Consensus 727 --------------------------------~~~~---------------g~~-------------~~~~~~~~P~GIa 746 (1057)
T PLN02919 727 --------------------------------RNLN---------------GSS-------------GTSTSFAQPSGIS 746 (1057)
T ss_pred --------------------------------ccCC---------------CCc-------------cccccccCccEEE
Confidence 0000 000 0000112356799
Q ss_pred EccCCC-EEEEeecCCcEEEEecCcCceeeeee------eE-EE----------eecCCCeEEEEcCCCcEEEEeC-CCc
Q 013274 317 VTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNF------ET-VR----------LQTSKPIQLATTQDPAVVFVPC-MTA 377 (446)
Q Consensus 317 fs~dg~-~l~sgs~D~~i~lWd~~~~~~~~~~~------~~-~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~ 377 (446)
|+|+|. .+++.+.+++|++||+.++......- .. .. .....+..+++.+++.+.++.. ...
T Consensus 747 vspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r 826 (1057)
T PLN02919 747 LSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK 826 (1057)
T ss_pred EeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE
Confidence 999997 55677888999999998754321100 00 00 0012345677788877655544 357
Q ss_pred eEEEEeecCceEEEe-------------cccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 378 VKAFDIWSGKTCLTF-------------RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 378 ~~~~d~~~~~~~~~l-------------~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
+++||..++...... .++-.....+++++||+++++-+.++.|++|++++..
T Consensus 827 IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 827 IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 999998776543221 2233467899999999999999999999999998764
No 245
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.99 E-value=1.4e-08 Score=90.90 Aligned_cols=247 Identities=18% Similarity=0.287 Sum_probs=154.2
Q ss_pred cCccccEeEEEEeecCCcEEEEEeCCCeEEEEE-CCCCeeeEE--EecCCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD-TNCTRVVMN--FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (446)
Q Consensus 100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd 176 (446)
.||...|++....|. ..-+.+.+.|.++|||- .+.++.-.. ..++..+....+... ...|..|-.+|++.-+.
T Consensus 21 eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e---~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE---SRRLYVGQDNGTVTEFA 96 (404)
T ss_pred cCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc---ceEEEEEEecceEEEEE
Confidence 588888888887774 44788999999999994 333332211 223444544454442 34688888889988886
Q ss_pred CC----CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274 177 IA----SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS 252 (446)
Q Consensus 177 ~~----~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (446)
+. .-..++....|...|..+.|+...+++ ++.+.|..+.---.+.+..+..+. ... ...+....
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V-~s~~~dk~~~~hc~e~~~~lg~Y~---~~~--------~~t~~~~d 164 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWV-LSTGKDKQFAWHCTESGNRLGGYN---FET--------PASALQFD 164 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeE-EEeccccceEEEeeccCCcccceE---eec--------cCCCCcee
Confidence 53 334566677899999999999888875 688887765522222221111100 000 00000000
Q ss_pred cccCCCCCcCCCCccccccCCCceeecccceeecCCcc-ccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274 253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV-RQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS 331 (446)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~ 331 (446)
+. ....+.. .+.+ ..++.+..........+|.+.+.+++|.+....|.||..|.
T Consensus 165 ~~-----------------------~~fvGd~--~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 165 AL-----------------------YAFVGDH--SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDH 219 (404)
T ss_pred eE-----------------------EEEeccc--ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccC
Confidence 00 0000000 0000 00111111222234568999999999999999999999999
Q ss_pred cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEE
Q 013274 332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL 411 (446)
Q Consensus 332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~l 411 (446)
.+-+||+.-.+- ....+.+|.+.|..+..-+--+.|
T Consensus 220 ~vi~wdigg~~g--------------------------------------------~~~el~gh~~kV~~l~~~~~t~~l 255 (404)
T KOG1409|consen 220 SVIMWDIGGRKG--------------------------------------------TAYELQGHNDKVQALSYAQHTRQL 255 (404)
T ss_pred ceEEEeccCCcc--------------------------------------------eeeeeccchhhhhhhhhhhhheee
Confidence 999999875321 113557888888888888888999
Q ss_pred EEeeCCCcEEEeCCCCCCCC
Q 013274 412 YTGGNDRQILVWCPSRHISD 431 (446)
Q Consensus 412 vtgs~D~~v~vW~~~~~~~~ 431 (446)
.|++.|+.|.+|+.+-.+++
T Consensus 256 ~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 256 ISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred eeccCCCeEEEEeccceeec
Confidence 99999999999999865433
No 246
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=4.6e-08 Score=88.14 Aligned_cols=194 Identities=20% Similarity=0.235 Sum_probs=123.0
Q ss_pred EEEEeeCCCcEEEEeCCCCceeeeeeC-CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCC
Q 013274 162 LIAAGTEDVQVRLCDIASGAISQTLSG-HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240 (446)
Q Consensus 162 ~lasgs~d~~v~vwd~~~~~~~~~l~~-h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 240 (446)
-+|++..|-.|++||-.. ++...++. .+..|++++|-|.+...|+.|+. +-|.||.......... .+
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r------~~---- 179 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR------NI---- 179 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc------cc----
Confidence 467788899999999776 55555553 46689999999988766666665 5699997642110000 00
Q ss_pred cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274 241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED 320 (446)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d 320 (446)
. ..+. ..+. .-...+| .+|++|.+.+|
T Consensus 180 ---------~-~~s~------------------------------~~~q------------vl~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 180 ---------R-MMST------------------------------HHLQ------------VLQDPGH-NPVTSMQWNED 206 (445)
T ss_pred ---------c-cccc------------------------------cchh------------heeCCCC-ceeeEEEEcCC
Confidence 0 0000 0000 0012355 57999999999
Q ss_pred CCEEEEeec-CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCc-eEEEEeecCceEEEecccccc
Q 013274 321 GMYLLSAGS-DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTA-VKAFDIWSGKTCLTFRGHYEY 398 (446)
Q Consensus 321 g~~l~sgs~-D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~l~gH~~~ 398 (446)
|..|++++- |..|.|||+.++.... +. .+..+....+..+||+..++.+.-++ .++|....-.......--.+.
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~p--L~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgr 282 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIP--LI--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGR 282 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCccc--cc--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCc
Confidence 999998865 5679999999875321 11 23344555788999999999886554 478854332222223333448
Q ss_pred eEEEEEcCCCCEEE-EeeCCCcEEEeCCC
Q 013274 399 VNCCCFSSQDQELY-TGGNDRQILVWCPS 426 (446)
Q Consensus 399 v~~~~fSpd~~~lv-tgs~D~~v~vW~~~ 426 (446)
|....|+|+|+.|. +++.. -+++.+.
T Consensus 283 vqtacWspcGsfLLf~~sgs--p~lysl~ 309 (445)
T KOG2139|consen 283 VQTACWSPCGSFLLFACSGS--PRLYSLT 309 (445)
T ss_pred eeeeeecCCCCEEEEEEcCC--ceEEEEe
Confidence 99999999998865 55433 3555554
No 247
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.98 E-value=1e-09 Score=68.47 Aligned_cols=39 Identities=38% Similarity=0.614 Sum_probs=36.5
Q ss_pred CceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274 386 GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 424 (446)
Q Consensus 386 ~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~ 424 (446)
++++.+|.+|.+.|++|+|+|++++|+|||.|++|++|+
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356789999999999999999999999999999999996
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=3e-08 Score=100.44 Aligned_cols=189 Identities=19% Similarity=0.255 Sum_probs=133.6
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECC
Q 013274 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN 134 (446)
Q Consensus 55 ~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 134 (446)
++..++.+..+..+.+||.......... ....+..+.. . .+.....+.-++++|+--+.|.+|+..
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i--~~~er~~l~~-----------~-~~~g~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKI--QSDERCTLYS-----------S-LIIGDSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhc--CCCceEEEEe-----------E-EEEeccCcEEEEEeccccccEEEEecc
Confidence 4567889999999999998754322110 0011111100 0 111233355688999999999999976
Q ss_pred C-CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee-eeeCCCCCeEEEEEecCCCeEEEEeeCC
Q 013274 135 C-TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTVEWSTSSEWILVTGGCD 212 (446)
Q Consensus 135 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~-~l~~h~~~v~sv~~s~~~~~~l~S~s~D 212 (446)
. ..+.+...+.|.++++.++.+ ..++++.|.|.++++|++++++... ..-+|++.|+.+.|.|+ .++|+++|
T Consensus 164 ~dn~p~~l~GHeG~iF~i~~s~d---g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~ged 237 (967)
T KOG0974|consen 164 EDNKPIRLKGHEGSIFSIVTSLD---GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGED 237 (967)
T ss_pred ccCCcceecccCCceEEEEEccC---CcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccc
Confidence 2 233444456677888888764 4589999999999999999997665 67799999999999987 37899999
Q ss_pred CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccc
Q 013274 213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 292 (446)
Q Consensus 213 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (446)
-+.++|+.... .+.
T Consensus 238 ctcrvW~~~~~-~l~----------------------------------------------------------------- 251 (967)
T KOG0974|consen 238 CTCRVWGVNGT-QLE----------------------------------------------------------------- 251 (967)
T ss_pred eEEEEEecccc-eeh-----------------------------------------------------------------
Confidence 99999964321 000
Q ss_pred ccCCCccccccccccccc-CeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274 293 RLHPGMLSSQDRATAHYG-AVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 293 ~~~~~~~~~~~~~~~h~~-~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~ 340 (446)
...+|.+ .|..++..++...++|++.|+.+++|++..
T Consensus 252 -----------~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 252 -----------VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -----------hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 0112332 378889999999999999999999999864
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.97 E-value=2e-07 Score=81.93 Aligned_cols=234 Identities=16% Similarity=0.220 Sum_probs=145.2
Q ss_pred CCc-EEEEEeCCCeEEEEECCCCeeeEEEe-cCCc------eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee--e
Q 013274 115 DTG-LFVTGSYDHYVKVWDTNCTRVVMNFK-MPGK------VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS--Q 184 (446)
Q Consensus 115 ~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~--~ 184 (446)
++. .++-+-.+|.|.++..........+. +.+. ..++.+.+. ..-++++-.+|.+.+.+.....+. +
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~---~~~i~vs~s~G~~~~v~~t~~~le~vq 159 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTS---GTKIFVSDSRGSISGVYETEMVLEKVQ 159 (339)
T ss_pred CccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeecc---CceEEEEcCCCcEEEEecceeeeeecc
Confidence 444 55667778889988765333222222 1111 122333332 334778888899987776655443 4
Q ss_pred eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCC
Q 013274 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR 264 (446)
Q Consensus 185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (446)
..+.|.-+.+...|+...+.++.||+.|+.+.-||+|..+.+ .+
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-i~----------------------------------- 203 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-IW----------------------------------- 203 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-ee-----------------------------------
Confidence 789999999999999888888899999999999999843210 00
Q ss_pred CccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCCcEEEEecCc-Cc
Q 013274 265 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVES-GR 342 (446)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~~i~lWd~~~-~~ 342 (446)
.....|..-|.++.-+| .+.+++||+-|..|++||.++ ++
T Consensus 204 --------------------------------------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 204 --------------------------------------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred --------------------------------------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 00124666688877764 688999999999999999885 33
Q ss_pred eeeeeeeEEEeecCCCeEEEEcCCCc-EEEEeC-CCceEEEEeecC--c---eEEEecccccceEEEEEcCCCCEEEEee
Q 013274 343 NTLVNFETVRLQTSKPIQLATTQDPA-VVFVPC-MTAVKAFDIWSG--K---TCLTFRGHYEYVNCCCFSSQDQELYTGG 415 (446)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~d~~~~--~---~~~~l~gH~~~v~~~~fSpd~~~lvtgs 415 (446)
+.. +. ...+.+-++.-.|.-. .++.+| -+..++.++.++ + .+.....|.+-...-.|..-...|+|||
T Consensus 246 Pl~---~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 246 PLF---KA--KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred ccc---cC--ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence 211 11 1123344444444322 223333 356777777554 2 3445566766666666643346799987
Q ss_pred C-CCcEE-EeCCCCCCC
Q 013274 416 N-DRQIL-VWCPSRHIS 430 (446)
Q Consensus 416 ~-D~~v~-vW~~~~~~~ 430 (446)
- |+.++ +|-.-+..+
T Consensus 321 FYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 321 FYDKKIRQLWLHITGEP 337 (339)
T ss_pred ccccceeeeeeeccCCc
Confidence 5 77755 997665544
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=6.5e-07 Score=88.56 Aligned_cols=215 Identities=15% Similarity=0.127 Sum_probs=123.4
Q ss_pred eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC---CcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274 127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE 203 (446)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d---~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~ 203 (446)
.|.++|.+.+...........+....++|++ ..|+..+.+ ..|.+||+++++... +....+.+.+..|+|+++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG---~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDG---KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCC---CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC
Confidence 4778888755443323334455666777754 345444322 469999999886432 333334456789999999
Q ss_pred eEEEEeeCCC--cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274 204 WILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 281 (446)
Q Consensus 204 ~~l~S~s~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (446)
.++++.+.+| .|.+||+.++...+ +
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~-l---------------------------------------------------- 282 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSR-V---------------------------------------------------- 282 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEE-c----------------------------------------------------
Confidence 7666666665 47777776542110 0
Q ss_pred ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CC--cEEEEecCcCceeeeeeeEEEeecCCC
Q 013274 282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTSKP 358 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~--~i~lWd~~~~~~~~~~~~~~~~~~~~~ 358 (446)
..+........|+|||+.|+-.+. ++ .|.++|+.+++..... ......
T Consensus 283 ------------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-----~~~~~~ 333 (430)
T PRK00178 283 ------------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-----FVGNYN 333 (430)
T ss_pred ------------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-----cCCCCc
Confidence 001111334579999987765443 33 4777787776532221 111222
Q ss_pred eEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC-Cc--EEEeCCCCCC
Q 013274 359 IQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND-RQ--ILVWCPSRHI 429 (446)
Q Consensus 359 ~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D-~~--v~vW~~~~~~ 429 (446)
....++|++..++.... ..+.++|+.+++... +. +........|||||++|+-.+.+ +. |.+.+.++..
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 34567888877655432 246678887776432 22 22223356899999998865543 33 5555665443
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.94 E-value=1.8e-05 Score=75.72 Aligned_cols=273 Identities=18% Similarity=0.246 Sum_probs=155.5
Q ss_pred eeEEEeecCCCCEEEEeeC----CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274 46 INSLQVDLTEERYLLSGAS----DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (446)
Q Consensus 46 v~~l~~s~~~~~~l~s~s~----Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s 121 (446)
-.-|++++ ++++|-+... ++.|..|++.... +.+.... .....|. ..+.+... +++++|++
T Consensus 39 Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~-----g~L~~~~------~~~~~g~--~p~~i~~~-~~g~~l~v 103 (345)
T PF10282_consen 39 PSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDT-----GTLTLLN------SVPSGGS--SPCHIAVD-PDGRFLYV 103 (345)
T ss_dssp ECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTT-----TEEEEEE------EEEESSS--CEEEEEEC-TTSSEEEE
T ss_pred CceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCc-----ceeEEee------eeccCCC--CcEEEEEe-cCCCEEEE
Confidence 35578886 4566666655 5789999886531 0110000 0000111 12233444 47788887
Q ss_pred EeC-CCeEEEEECCC-CeeeEE---Ee-----------cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--ee
Q 013274 122 GSY-DHYVKVWDTNC-TRVVMN---FK-----------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--IS 183 (446)
Q Consensus 122 ~s~-D~~i~iWd~~~-~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--~~ 183 (446)
+.+ +++|.++++.. +.+... +. ...+.+.+.+.|+. ..++++--....|.+|+++... +.
T Consensus 104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEE
Confidence 775 89999999976 443222 21 12346778888753 2445554445689999997764 31
Q ss_pred --eeee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccC-CceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274 184 --QTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS 259 (446)
Q Consensus 184 --~~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (446)
..+. .....-..+.|+|+++++.+..-.+++|.++++.. ...+..+....
T Consensus 182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~-------------------------- 235 (345)
T PF10282_consen 182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS-------------------------- 235 (345)
T ss_dssp EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE--------------------------
T ss_pred EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee--------------------------
Confidence 2222 33455689999999998778888889999999872 11111111000
Q ss_pred CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEEEEec
Q 013274 260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDV 338 (446)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~lWd~ 338 (446)
.++. . ..+ ......|+++|||++| ++.....+|.+|++
T Consensus 236 -----------------------~~~~----------~-------~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 236 -----------------------TLPE----------G-------FTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp -----------------------SCET----------T-------SCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred -----------------------eccc----------c-------ccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 0000 0 000 1136778999999976 55567788999999
Q ss_pred Cc--CceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--CceEEEEee--cCceEEEec-ccccceEEEEE
Q 013274 339 ES--GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIW--SGKTCLTFR-GHYEYVNCCCF 404 (446)
Q Consensus 339 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~--~~~~~~~l~-gH~~~v~~~~f 404 (446)
.. ++.. ...........+-.+++++++..+++++. +.+.+|++. +|.+...-. -......||.|
T Consensus 275 d~~~g~l~--~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 275 DPATGTLT--LVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp CTTTTTEE--EEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred ecCCCceE--EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 43 3322 22233322344677899999999998754 578888874 455433221 23455677776
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.4e-06 Score=86.28 Aligned_cols=215 Identities=14% Similarity=0.117 Sum_probs=118.4
Q ss_pred eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee-CC--CcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274 127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT-ED--VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE 203 (446)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs-~d--~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~ 203 (446)
.|.++|.+......-......+....++|++ ..|+..+ .+ ..|++||+.+++.. .+....+...+.+|+|+++
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG---~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDG---RKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCC---CEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCC
Confidence 6777787654332222333445566777754 3444433 23 36899999887642 2222223345789999999
Q ss_pred eEEEEeeCCCc--EEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274 204 WILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 281 (446)
Q Consensus 204 ~~l~S~s~Dg~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (446)
.++++.+.+|. |.++|+.++...+ +
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~-l---------------------------------------------------- 301 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTR-I---------------------------------------------------- 301 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEE-C----------------------------------------------------
Confidence 87667777776 5555654432100 0
Q ss_pred ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCc--EEEEecCcCceeeeeeeEEEeecCCC
Q 013274 282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSR--IRLWDVESGRNTLVNFETVRLQTSKP 358 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~--i~lWd~~~~~~~~~~~~~~~~~~~~~ 358 (446)
..+.......+|+|||++|+..+. ++. |.++|+.+++..... ......
T Consensus 302 ------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-----~~g~~~ 352 (448)
T PRK04792 302 ------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-----FEGEQN 352 (448)
T ss_pred ------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-----cCCCCC
Confidence 011112345679999998765543 344 556677666432211 111222
Q ss_pred eEEEEcCCCcEEEEeCC--C--ceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeC-CCc--EEEeCCCCCC
Q 013274 359 IQLATTQDPAVVFVPCM--T--AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQ--ILVWCPSRHI 429 (446)
Q Consensus 359 ~~~~~~~~~~~~~~~~~--~--~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~-D~~--v~vW~~~~~~ 429 (446)
....++|++..++.... . .+..+|+.+++.. .+... ......+|+|||++|+-.+. ++. +.+++.++..
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~ 428 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF 428 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 33578888877655422 2 3445666666542 33222 12234589999999875444 443 5566666543
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=6e-07 Score=88.79 Aligned_cols=217 Identities=17% Similarity=0.167 Sum_probs=125.4
Q ss_pred ccccEeEEEEeecCCcEEEEEeCC---CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEEe
Q 013274 102 HKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCD 176 (446)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~s~s~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vwd 176 (446)
+...+....|+| +++.|+..+.+ ..|.+||+.+++........+......++|++. .++.+.+.++ .|+++|
T Consensus 197 ~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~--~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 197 SREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS--KLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred CCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC--EEEEEEccCCCceEEEEE
Confidence 444566778887 77787766644 368899998876544333334444456776532 3433444444 688889
Q ss_pred CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCc--EEEEEccCCceeEEeecccccccCCCcccccceeeccccc
Q 013274 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLS 254 (446)
Q Consensus 177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (446)
++++.. ..+..+........|+|+++.++.+...+|. |.++|+.++...+..
T Consensus 274 ~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt------------------------- 327 (430)
T PRK00178 274 LASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT------------------------- 327 (430)
T ss_pred CCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-------------------------
Confidence 998764 3455566667778999999876666555554 555555433211000
Q ss_pred cCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC-C--
Q 013274 255 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD-S-- 331 (446)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D-~-- 331 (446)
. .+ .......|+|||++|+-.+.+ +
T Consensus 328 -------------------------------~-------------------~~--~~~~~~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 328 -------------------------------F-------------------VG--NYNARPRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred -------------------------------c-------------------CC--CCccceEECCCCCEEEEEEccCCce
Confidence 0 00 011235689999988766543 3
Q ss_pred cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--C--ceEEEEeecCceEEEecccccceEEEEEcC
Q 013274 332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--T--AVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 406 (446)
Q Consensus 332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp 406 (446)
.|.+||+.++...... . ........++|++..++.... + .+.++++ ++.....+..+.+.+...+|||
T Consensus 356 ~l~~~dl~tg~~~~lt--~----~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 356 HVAAQDLQRGSVRILT--D----TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI-NGRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEEEEECCCCCEEEcc--C----CCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 4788899886532211 1 112223468888887765432 1 2344444 3444445555556666667765
No 254
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.88 E-value=1.2e-08 Score=89.47 Aligned_cols=162 Identities=22% Similarity=0.308 Sum_probs=113.6
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
.++|.-..+...|+..+.+++-|||.|+.+.-||+.-... ...++..-|..+|.++..+|+.+.+
T Consensus 161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---------------~i~~n~kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---------------FIWHNSKVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---------------eeeecceeeecceEEEecCCCCCce
Confidence 3579999999999877778999999999999999862211 1123345689999999999999999
Q ss_pred EEEEeCCCeEEEEECCC-CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc-----eeeeeeCCCCC
Q 013274 119 FVTGSYDHYVKVWDTNC-TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-----ISQTLSGHRDG 192 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-----~~~~l~~h~~~ 192 (446)
++||++|-.|++||+.. ++++..-...|.+.++..+|... +.++++ +.-+-.+|.+.+.+. .....+.|.+-
T Consensus 226 I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~-~~lL~~-CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl 303 (339)
T KOG0280|consen 226 IATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF-HRLLAA-CMHNGAKILDSSDKVLEFQIVLPSDKIHDSL 303 (339)
T ss_pred EEEeccccceeeeehhcccCccccCccccceEEEEecchhh-hHHHHH-HHhcCceEEEecccccchheeeeccccccce
Confidence 99999999999999974 56676666678888888888654 233343 333446777776552 22334556665
Q ss_pred eEEEEEecCCCeEEEEeeC-CCcEE-EE
Q 013274 193 IMTVEWSTSSEWILVTGGC-DGAIR-FW 218 (446)
Q Consensus 193 v~sv~~s~~~~~~l~S~s~-Dg~I~-iW 218 (446)
+..-.|... ..+|+||+. |+.|+ +|
T Consensus 304 ~YG~DWd~~-~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 304 CYGGDWDSK-DSFLATCSFYDKKIRQLW 330 (339)
T ss_pred eeccccccc-cceeeeeeccccceeeee
Confidence 555556322 235677663 55544 66
No 255
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=8.3e-08 Score=85.97 Aligned_cols=171 Identities=18% Similarity=0.327 Sum_probs=101.5
Q ss_pred cceeEEEeecCCC-CEEEEeeCCCcEEEEEcccCcCCC---------CCCccccccceEEec--------c--ccccCcc
Q 013274 44 GSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYE---------GGGHIAKHRSVFVVD--------K--QHEHGHK 103 (446)
Q Consensus 44 ~~v~~l~~s~~~~-~~l~s~s~Dg~i~lWd~~~~~~~~---------~~~~~~~~~~~~~~~--------~--~~~~gh~ 103 (446)
..|+.++|..+.+ ..++....|++|++|.+....... ..+.+...+...+.. . ....+|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4688888865432 344455689999999985432111 001111111111100 0 1235899
Q ss_pred ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEE---e------cCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF---K------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRL 174 (446)
Q Consensus 104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v 174 (446)
.-|.++.+.+ |...++|+ +|=.|.+|+++-...-.++ . +..-+.+..|+|.. ..+++.+++.|+|++
T Consensus 165 yhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~--cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 165 YHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH--CNVFVYSSSKGTIRL 240 (433)
T ss_pred eEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH--ccEEEEecCCCcEEE
Confidence 9999988775 67777765 5678999998632211111 1 11224555666643 457888889999999
Q ss_pred EeCCCCcee----eeeeC------------CCCCeEEEEEecCCCeEEEEeeCC-CcEEEEEcc
Q 013274 175 CDIASGAIS----QTLSG------------HRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR 221 (446)
Q Consensus 175 wd~~~~~~~----~~l~~------------h~~~v~sv~~s~~~~~~l~S~s~D-g~I~iWd~~ 221 (446)
.|++...+. +.+.. =-..|..|.|+++|+++ +| .| -+|++||+.
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryi-ls--RDyltvk~wD~n 301 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYI-LS--RDYLTVKLWDLN 301 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEE-EE--eccceeEEEecc
Confidence 999854321 11111 12347788899999874 43 44 799999984
No 256
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=5.4e-09 Score=101.90 Aligned_cols=160 Identities=16% Similarity=0.347 Sum_probs=105.6
Q ss_pred ceeEEEeecCC--CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274 45 SINSLQVDLTE--ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (446)
Q Consensus 45 ~v~~l~~s~~~--~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~ 122 (446)
.|-.++|++.- .-.+|+.|.-+ -.+|++..... +.+ .-..+||..+|+.+.|.+...+.++++
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qk-aiiwnlA~ss~----------~aI----ef~lhghsraitd~n~~~q~pdVlatc 133 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKSSS----------NAI----EFVLHGHSRAITDINFNPQHPDVLATC 133 (1081)
T ss_pred hhcceecccCCCCceeEEecCcch-hhhhhhhcCCc----------cce----EEEEecCccceeccccCCCCCcceeec
Confidence 34455665432 23455554444 44787753221 111 112469999999999999889999999
Q ss_pred eCCCeEEEEECCCCee-eEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeEEEEEe
Q 013274 123 SYDHYVKVWDTNCTRV-VMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTVEWS 199 (446)
Q Consensus 123 s~D~~i~iWd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~sv~~s 199 (446)
+.|..+..||+.+... +..+.. ......+.+.-.. .. +.+.+....|++||++.| .++..+++|...|.++.|.
T Consensus 134 svdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~--p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn 210 (1081)
T KOG0309|consen 134 SVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD--PN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFN 210 (1081)
T ss_pred cccccceeeeccCCCcceeeeecccccCceeeecccC--cc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHh
Confidence 9999999999976542 222211 0111223333222 22 334456678999999877 5778899999999999987
Q ss_pred cCCCeEEEEeeCCCcEEEEEccC
Q 013274 200 TSSEWILVTGGCDGAIRFWDIRR 222 (446)
Q Consensus 200 ~~~~~~l~S~s~Dg~I~iWd~~~ 222 (446)
.-....+.+++.|+++++||..+
T Consensus 211 r~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 211 RFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred hhhhhhhcccCCCCceeeecccc
Confidence 65444567999999999999754
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=4.1e-06 Score=82.31 Aligned_cols=119 Identities=12% Similarity=0.139 Sum_probs=71.6
Q ss_pred EEEEEccCCCEEEEee-cCCcEEEEec--CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC----CceEEEEeec
Q 013274 313 TGLKVTEDGMYLLSAG-SDSRIRLWDV--ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWS 385 (446)
Q Consensus 313 ~~l~fs~dg~~l~sgs-~D~~i~lWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~ 385 (446)
...+|+|||++|+..+ .++...+|.+ ........ .+............+||+..++.... ..+.+||+.+
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~---~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR---LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceE---EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 4568999999877654 4666666643 32110011 11111223345678999887665432 3578889887
Q ss_pred CceEEEecccccceEEEEEcCCCCEEEE-eeC--CCcEEEeCCCCCCCCCcCC
Q 013274 386 GKTCLTFRGHYEYVNCCCFSSQDQELYT-GGN--DRQILVWCPSRHISDGVDA 435 (446)
Q Consensus 386 ~~~~~~l~gH~~~v~~~~fSpd~~~lvt-gs~--D~~v~vW~~~~~~~~~~~~ 435 (446)
++... +......+....|+|||++|+- ... ...|.+|++++.....+..
T Consensus 361 g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 361 GRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred CCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 76543 3333445678999999998874 333 3557788887765544433
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.77 E-value=8.3e-07 Score=79.69 Aligned_cols=249 Identities=16% Similarity=0.203 Sum_probs=155.4
Q ss_pred EeEEEEeecCCcEEEEEeCCCeEEEEECCCCe-----eeEEEec-------------CCceEEeeeccCCCCceEEEEee
Q 013274 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----VVMNFKM-------------PGKVYRTAMSPLAASHMLIAAGT 167 (446)
Q Consensus 106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----~~~~~~~-------------~~~~~~~~~~~~~~~~~~lasgs 167 (446)
+.+.+-+...|.+||||..+|.|.++.-+... ....++. ..++..+.+...... ..++...
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~-a~FLlst 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL-AEFLLST 105 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc-cEEEEec
Confidence 33444555689999999999999999643211 1122221 223555566555433 3455556
Q ss_pred CCCcEEEEeCCCCce-----------------------------------eeee-eCCCCCeEEEEEecCCCeEEEEeeC
Q 013274 168 EDVQVRLCDIASGAI-----------------------------------SQTL-SGHRDGIMTVEWSTSSEWILVTGGC 211 (446)
Q Consensus 168 ~d~~v~vwd~~~~~~-----------------------------------~~~l-~~h~~~v~sv~~s~~~~~~l~S~s~ 211 (446)
.|.+|++|-+..... .+.+ .+|.--|.+++++.|.+. ++| +.
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et-~lS-AD 183 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET-FLS-AD 183 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce-Eee-cc
Confidence 799999998742210 0111 357778999999988775 555 45
Q ss_pred CCcEEEEEccCC-ceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcc
Q 013274 212 DGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV 290 (446)
Q Consensus 212 Dg~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (446)
|=.|.+|.+... +++.+.+.....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~n------------------------------------------------------- 208 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPAN------------------------------------------------------- 208 (433)
T ss_pred ceeeeeccccccCCceeEEEccccC-------------------------------------------------------
Confidence 788999987532 122111100000
Q ss_pred ccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCc-----eeee-eeeE-E-----EeecCC
Q 013274 291 RQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGR-----NTLV-NFET-V-----RLQTSK 357 (446)
Q Consensus 291 ~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~-----~~~~-~~~~-~-----~~~~~~ 357 (446)
...-.--|++--|+|.. ..++=.++.|+||+-|++... ..+. ..+. . ......
T Consensus 209 --------------mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsS 274 (433)
T KOG1354|consen 209 --------------MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISS 274 (433)
T ss_pred --------------HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhh
Confidence 00001125666788753 455666789999999998421 1110 0000 0 000123
Q ss_pred CeEEEEcCCCcEEEEeCCCceEEEEe-ecCceEEEecccc------------cce---EEEEEcCCCCEEEEeeCCCcEE
Q 013274 358 PIQLATTQDPAVVFVPCMTAVKAFDI-WSGKTCLTFRGHY------------EYV---NCCCFSSQDQELYTGGNDRQIL 421 (446)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~l~gH~------------~~v---~~~~fSpd~~~lvtgs~D~~v~ 421 (446)
...+.|++++.++++...-++++||+ ...+.+.+++-|. +.| .-|+||-++..+.|||.....+
T Consensus 275 ISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~fr 354 (433)
T KOG1354|consen 275 ISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFR 354 (433)
T ss_pred hhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEE
Confidence 44678999999999888889999999 6677788887774 223 4688999999999999999999
Q ss_pred EeCCC
Q 013274 422 VWCPS 426 (446)
Q Consensus 422 vW~~~ 426 (446)
+++..
T Consensus 355 vf~~~ 359 (433)
T KOG1354|consen 355 VFNLA 359 (433)
T ss_pred EecCC
Confidence 99954
No 259
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.73 E-value=2e-05 Score=70.69 Aligned_cols=340 Identities=16% Similarity=0.155 Sum_probs=162.1
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s 123 (446)
..|.-|-|..+.-..|-.++.|+.|.+|++...+.+- .| +.-..++.+..|+|....+|.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c---kI--------------deg~agls~~~WSPdgrhiL~tse 111 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC---KI--------------DEGQAGLSSISWSPDGRHILLTSE 111 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEE---Ee--------------ccCCCcceeeeECCCcceEeeeec
Confidence 3456677775433445555889999999986544320 00 122345667889984447788888
Q ss_pred CCCeEEEEECCCCeeeEEEecCC-ceEEeeeccCCCCce-----------------------------EEEE----eeCC
Q 013274 124 YDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHM-----------------------------LIAA----GTED 169 (446)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------------------~las----gs~d 169 (446)
-|-.|.+|.+.+.+... ++.+. .+...++.++..-.. +=.+ +-.+
T Consensus 112 F~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg 190 (447)
T KOG4497|consen 112 FDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG 190 (447)
T ss_pred ceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC
Confidence 99999999998766532 12111 122333443321000 0001 1123
Q ss_pred CcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCC-Cccccccee
Q 013274 170 VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR-PPLLKRKVS 248 (446)
Q Consensus 170 ~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 248 (446)
..+.+||---.-.+..+ .-.-.+..++|+|.++ +|+.|+.|+.+|+-+--+-+.+..+-...+-.... ..+.+....
T Consensus 191 ~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 191 NWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred cEEEEecchhhheeeee-eeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 45677774221111111 1235689999999887 57899999999988754433322211100000000 000000000
Q ss_pred ecc-ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe
Q 013274 249 ISK-SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA 327 (446)
Q Consensus 249 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg 327 (446)
+.+ ....-...+....+... ..+...+ ........++.... ..+.... .-.+..++|++|..|++|-
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~---------~~se~~Y-E~~~~pv~~~~lkp-~tD~pnP-k~g~g~lafs~Ds~y~aTr 336 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIW---------EESETIY-EQQMTPVKVHKLKP-PTDFPNP-KCGAGKLAFSCDSTYAATR 336 (447)
T ss_pred hhhhcccccccCCCccccCcc---------ccchhhh-hhhhcceeeecccC-CCCCCCc-ccccceeeecCCceEEeee
Confidence 000 00000000000000000 0000000 00000000000000 0000111 2347789999999999986
Q ss_pred ecC--CcEEEEecCcCceeeeeeeEEEeecCCCeE-EEEcCCCcEEEE-eCCCceEEEEeecCceEEEecccccceEEEE
Q 013274 328 GSD--SRIRLWDVESGRNTLVNFETVRLQTSKPIQ-LATTQDPAVVFV-PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC 403 (446)
Q Consensus 328 s~D--~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~ 403 (446)
... .-+-+||+...+...+ +.+..++. +...|.-..+++ -+......|.. +|......++..-.|..+.
T Consensus 337 nd~~PnalW~Wdlq~l~l~av------LiQk~piraf~WdP~~prL~vctg~srLY~W~p-sg~~~V~vP~~GF~i~~l~ 409 (447)
T KOG4497|consen 337 NDKYPNALWLWDLQNLKLHAV------LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP-SGPRVVGVPKKGFNIQKLQ 409 (447)
T ss_pred cCCCCceEEEEechhhhhhhh------hhhccceeEEEeCCCCceEEEEcCCceEEEEcC-CCceEEecCCCCceeeeEE
Confidence 433 4588999987542111 11112222 233343333333 33344455543 2333334444446789999
Q ss_pred EcCCCCEEEEeeCCCcEEE
Q 013274 404 FSSQDQELYTGGNDRQILV 422 (446)
Q Consensus 404 fSpd~~~lvtgs~D~~v~v 422 (446)
|.-+|..++-++.|.-..-
T Consensus 410 W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 410 WLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred ecCCCcEEEEEcCCceEEE
Confidence 9999999999999865443
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.71 E-value=3.3e-05 Score=83.90 Aligned_cols=277 Identities=16% Similarity=0.224 Sum_probs=151.6
Q ss_pred EEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE-eCCC
Q 013274 48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-SYDH 126 (446)
Q Consensus 48 ~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~-s~D~ 126 (446)
.+++++.++++.++-+..+.|++||..........+ . +.... .......++-.....+++.+ +++.|+.+ ...+
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-~-g~~G~--~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~ 646 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-T-GEEGL--RDGSFEDATFNRPQGLAYNA-KKNLLYVADTENH 646 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-C-CCcCC--CCCchhccccCCCcEEEEeC-CCCEEEEEeCCCc
Confidence 577876667788888889999999975321100000 0 00000 00000001111123445554 45544444 4567
Q ss_pred eEEEEECCCCeeeEEEecC------------------CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274 127 YVKVWDTNCTRVVMNFKMP------------------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG 188 (446)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~ 188 (446)
.|+++|+.++... ++... .....+++.+. +..++++.+.++.|++||..++... .+.+
T Consensus 647 ~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~--~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 647 ALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV--NEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred eEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecC--CCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 8999998776542 22111 01234555542 3456777778899999999877532 1211
Q ss_pred ---------C------CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274 189 ---------H------RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL 253 (446)
Q Consensus 189 ---------h------~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (446)
+ -.....|+|+|++++++++-+.++.|++||+.++... .+........ .
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~~~~~---~------------ 786 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGDPTFS---D------------ 786 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecccccC---c------------
Confidence 1 1234569999998877788888899999998765421 1100000000 0
Q ss_pred ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcE
Q 013274 254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI 333 (446)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i 333 (446)
.... .+. ..+. + ..........|+|+++|..+++.+.+++|
T Consensus 787 --------------~l~~---------fG~--~dG~-------g-------~~~~l~~P~Gvavd~dG~LYVADs~N~rI 827 (1057)
T PLN02919 787 --------------NLFK---------FGD--HDGV-------G-------SEVLLQHPLGVLCAKDGQIYVADSYNHKI 827 (1057)
T ss_pred --------------cccc---------ccC--CCCc-------h-------hhhhccCCceeeEeCCCcEEEEECCCCEE
Confidence 0000 000 0000 0 00011124578999999999999999999
Q ss_pred EEEecCcCceeeeeeeE---------EEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCce
Q 013274 334 RLWDVESGRNTLVNFET---------VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKT 388 (446)
Q Consensus 334 ~lWd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~ 388 (446)
++||..++......-.. .......+..+++++++.++++... ..+++||+.+++.
T Consensus 828 rviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 828 KKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999876432110000 0011234666788888876655544 5799999988764
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.70 E-value=9.4e-08 Score=101.77 Aligned_cols=155 Identities=19% Similarity=0.260 Sum_probs=111.8
Q ss_pred ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc--eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc
Q 013274 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA 181 (446)
Q Consensus 104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~ 181 (446)
..|.++..+|. ..+.+||+.||.|++|.-..++.+..+...|. +.+..+... +.-+..+-.||.+-+|.+. ++
T Consensus 2209 ~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q---Gnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2209 ENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ---GNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred CceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc---CCceeeeccCCceeecccC-Cc
Confidence 34555555664 34789999999999999887887777765554 333344432 3346677779999999987 55
Q ss_pred eeeeeeCCCCCeEEEEEecCCCeEEEEee---CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274 182 ISQTLSGHRDGIMTVEWSTSSEWILVTGG---CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN 258 (446)
Q Consensus 182 ~~~~l~~h~~~v~sv~~s~~~~~~l~S~s---~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (446)
+....+-|+......+|-. . ++++++ .++.+.+||.-.....
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~-------------------------------- 2328 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMN-------------------------------- 2328 (2439)
T ss_pred ceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCccc--------------------------------
Confidence 6666677888888888875 2 356654 4678999996421000
Q ss_pred CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274 259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 338 (446)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~ 338 (446)
. -....|.+.++++++-|..+.|+|||.+|.|++||+
T Consensus 2329 ------------------------------s-------------~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2329 ------------------------------S-------------LVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred ------------------------------c-------------eeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 0 001468888999999999999999999999999999
Q ss_pred CcC
Q 013274 339 ESG 341 (446)
Q Consensus 339 ~~~ 341 (446)
...
T Consensus 2366 rqr 2368 (2439)
T KOG1064|consen 2366 RQR 2368 (2439)
T ss_pred HHH
Confidence 854
No 262
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.67 E-value=4.5e-07 Score=83.02 Aligned_cols=152 Identities=18% Similarity=0.265 Sum_probs=95.0
Q ss_pred cCCcEEEEEeCCCeEEEEECCCC----eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC
Q 013274 114 VDTGLFVTGSYDHYVKVWDTNCT----RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH 189 (446)
Q Consensus 114 ~~~~~l~s~s~D~~i~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h 189 (446)
+.+.++|.+-.++...++++... ++...+..+.....+.+........+.-..+....+.+|....+ ...-+-||
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~~~~~lGh 150 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-RCEPILGH 150 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-Ccchhhhh
Confidence 45667777766666555554322 22222223333333333333222222223344455666665543 33456689
Q ss_pred CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR 269 (446)
Q Consensus 190 ~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (446)
-..++.|+|+||++. ++|+..|..||+-.....-. +
T Consensus 151 vSml~dVavS~D~~~-IitaDRDEkIRvs~ypa~f~---I---------------------------------------- 186 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQF-IITADRDEKIRVSRYPATFV---I---------------------------------------- 186 (390)
T ss_pred hhhhheeeecCCCCE-EEEecCCceEEEEecCcccc---h----------------------------------------
Confidence 999999999999985 68999999999876432100 0
Q ss_pred ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce
Q 013274 270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 343 (446)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~ 343 (446)
..-..||...|..++.-+ +..|+|||.|++|++||+.+++.
T Consensus 187 --------------------------------esfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 187 --------------------------------ESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred --------------------------------hhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCc
Confidence 001247888898888865 55689999999999999999875
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.65 E-value=5.6e-05 Score=73.40 Aligned_cols=269 Identities=18% Similarity=0.142 Sum_probs=149.3
Q ss_pred CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC
Q 013274 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC 135 (446)
Q Consensus 56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 135 (446)
+..+..++.++.|.-+|..+++..= .. ......... .. .++..++.++.|+.+..+|.++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W------------~~--~~~~~~~~~---p~---v~~~~v~v~~~~g~l~ald~~t 124 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLW------------RV--DLDERLSGG---VG---ADGGLVFVGTEKGEVIALDAED 124 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEee------------ee--cCCCCcccc---eE---EcCCEEEEEcCCCEEEEEECCC
Confidence 3468888899999999988775310 00 000011111 11 1356788888999999999999
Q ss_pred CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe-----EEEEEecCCCeEEEEee
Q 013274 136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-----MTVEWSTSSEWILVTGG 210 (446)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v-----~sv~~s~~~~~~l~S~s 210 (446)
++.+......+.+.. .+...+ ..++.++.++.++.+|.++|+.+..+....... .+..+. + .. ++.+.
T Consensus 125 G~~~W~~~~~~~~~~---~p~v~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~-v~~~~ 197 (377)
T TIGR03300 125 GKELWRAKLSSEVLS---PPLVAN-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GG-VLVGF 197 (377)
T ss_pred CcEeeeeccCceeec---CCEEEC-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CE-EEEEC
Confidence 998877766554332 121112 245666779999999999999887765433221 111222 2 23 56777
Q ss_pred CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcc
Q 013274 211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV 290 (446)
Q Consensus 211 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (446)
.++.+.-+|+++++..-....... .+. ...
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~~~-~g~-------------------------------------------------~~~ 227 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVALP-KGR-------------------------------------------------TEL 227 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccccC-CCC-------------------------------------------------Cch
Confidence 789999999887653211100000 000 000
Q ss_pred ccccCCCccccccccccc-ccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcE
Q 013274 291 RQRLHPGMLSSQDRATAH-YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAV 369 (446)
Q Consensus 291 ~~~~~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (446)
. ..... ..++ + .+..+..++.++.+..||+.+++..-. .. ......++ ..+..
T Consensus 228 -~-----------~~~~~~~~p~----~--~~~~vy~~~~~g~l~a~d~~tG~~~W~-~~-----~~~~~~p~--~~~~~ 281 (377)
T TIGR03300 228 -E-----------RLVDVDGDPV----V--DGGQVYAVSYQGRVAALDLRSGRVLWK-RD-----ASSYQGPA--VDDNR 281 (377)
T ss_pred -h-----------hhhccCCccE----E--ECCEEEEEEcCCEEEEEECCCCcEEEe-ec-----cCCccCce--EeCCE
Confidence 0 00000 0011 1 244666677899999999988753211 11 01111111 12334
Q ss_pred EEEeC-CCceEEEEeecCceEEEeccccc-ceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 370 VFVPC-MTAVKAFDIWSGKTCLTFRGHYE-YVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 370 ~~~~~-~~~~~~~d~~~~~~~~~l~gH~~-~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
+++.. ...+..+|..+++.+-.+..-.. ....... .+..|+.++.|+.|.++++.++.
T Consensus 282 vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 282 LYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred EEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 44443 45788888888876543321111 1122222 46788899999999999987553
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=8e-06 Score=78.04 Aligned_cols=115 Identities=10% Similarity=0.191 Sum_probs=87.9
Q ss_pred cccCeEEEEEccCCCE--EEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC----CceEEE
Q 013274 308 HYGAVTGLKVTEDGMY--LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAF 381 (446)
Q Consensus 308 h~~~v~~l~fs~dg~~--l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 381 (446)
..|+|.++.|+|+|+- ++-|-.=..+.|+|++.. . ...+..+....+.++|.+.+++.++- +.+.+|
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-P------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-E------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 3689999999999975 445667788999998753 1 12334556667889999999888754 479999
Q ss_pred EeecCceEEEecccccceEEEEEcCCCCEEEEeeC------CCcEEEeCCCCCCCC
Q 013274 382 DIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN------DRQILVWCPSRHISD 431 (446)
Q Consensus 382 d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~------D~~v~vW~~~~~~~~ 431 (446)
|+.+.+++..+..-. -+-+.|+|||++++|+.. |+.++||+..+..+.
T Consensus 342 Dv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred eccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 999988877776543 357899999999997653 799999998877654
No 265
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.62 E-value=1.2e-07 Score=58.90 Aligned_cols=38 Identities=37% Similarity=0.830 Sum_probs=34.8
Q ss_pred ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (446)
Q Consensus 181 ~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd 219 (446)
+++.++.+|.+.|.+++|+|++. .|+|++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 56788999999999999999977 479999999999997
No 266
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2e-06 Score=79.86 Aligned_cols=270 Identities=14% Similarity=0.168 Sum_probs=162.7
Q ss_pred CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (446)
Q Consensus 42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s 121 (446)
|...|+-+..+ -.++++++|-||.++.|.-..-.-. .. -.++..|-+.|.+++.+- ++-++.|
T Consensus 8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGv-------------Ef-VKhFraHL~~I~sl~~S~-dg~L~~S 70 (558)
T KOG0882|consen 8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGV-------------EF-VKHFRAHLGVILSLAVSY-DGWLFRS 70 (558)
T ss_pred ccceeeeEeee--hhheEEeeecchhhhhcCCCCccce-------------ee-hhhhHHHHHHHHhhhccc-cceeEee
Confidence 66667766654 3579999999999999964321100 00 123345666666655543 7878899
Q ss_pred EeC-CCeEEEEECCCCeee---EEEecCCceEEeeeccCCCCceEEEE-eeCCCcEEEEeCCCCc-eeeeee-CCCCCeE
Q 013274 122 GSY-DHYVKVWDTNCTRVV---MNFKMPGKVYRTAMSPLAASHMLIAA-GTEDVQVRLCDIASGA-ISQTLS-GHRDGIM 194 (446)
Q Consensus 122 ~s~-D~~i~iWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~las-gs~d~~v~vwd~~~~~-~~~~l~-~h~~~v~ 194 (446)
.+. |+.+|++|+++-..+ +..-+++.+..+....+.. .++|. .-.++.+.++|-.... ....+. =|..+|.
T Consensus 71 v~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~--s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~ 148 (558)
T KOG0882|consen 71 VEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKI--SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVK 148 (558)
T ss_pred ccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCee--eeEEeecccCCCcEEECCcCCcCccceecccccCceE
Confidence 888 999999998765433 2233455544333322211 23443 3467899999976554 233333 4999999
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN 274 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (446)
.+.+++.+. .++|....|-|.-|.... .++..+. . .. . ..+ ...
T Consensus 149 ~i~y~qa~D-s~vSiD~~gmVEyWs~e~--~~qfPr~------~--------l~----------~--~~K----~eT--- 192 (558)
T KOG0882|consen 149 KIRYNQAGD-SAVSIDISGMVEYWSAEG--PFQFPRT------N--------LN----------F--ELK----HET--- 192 (558)
T ss_pred EEEeecccc-ceeeccccceeEeecCCC--cccCccc------c--------cc----------c--ccc----ccc---
Confidence 999999887 468888889999997642 1111100 0 00 0 000 000
Q ss_pred ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeee-------
Q 013274 275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN------- 347 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~------- 347 (446)
.............++.|+|+|..+.+-+.|.+|+++++.+++..+..
T Consensus 193 --------------------------dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~ 246 (558)
T KOG0882|consen 193 --------------------------DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDA 246 (558)
T ss_pred --------------------------hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhh
Confidence 00000111234678899999999999999999999999988632110
Q ss_pred ---------eeEEEee-------------cCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEe
Q 013274 348 ---------FETVRLQ-------------TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF 392 (446)
Q Consensus 348 ---------~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l 392 (446)
+....+. ......+.+...+..+.-++.-.++++++.+++..+.|
T Consensus 247 ~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 247 QYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred hhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 0000000 00112345555666777677778999999888766544
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.60 E-value=1.6e-05 Score=69.35 Aligned_cols=147 Identities=12% Similarity=-0.005 Sum_probs=90.6
Q ss_pred CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC
Q 013274 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT 136 (446)
Q Consensus 57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~ 136 (446)
.+|+.|+.-|...+|.+.+.+. ++ +....|...|.-+.-+....-.+.-++.|+++++.+++.+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~-----h~-----------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDG-----HL-----------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred cEEEeccccceeeeecccCccc-----ce-----------eeecccccchhhhhhhcccccceeeccCCcceeEEEEecC
Confidence 4799999999999999876432 10 0001122212111111111224667889999999998754
Q ss_pred eeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-cee-e-eeeCCCCCeEEEEEecCCCeEEEEeeCC
Q 013274 137 RVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AIS-Q-TLSGHRDGIMTVEWSTSSEWILVTGGCD 212 (446)
Q Consensus 137 ~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~-~-~l~~h~~~v~sv~~s~~~~~~l~S~s~D 212 (446)
........+ -..++..++++ ..+.++.+....|..|.++.. .++ . ....-++.-.+.+|+..+. .+|++..|
T Consensus 149 s~~~~~h~~~~~~ns~~~snd---~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qd 224 (344)
T KOG4532|consen 149 SNKFAVHNQNLTQNSLHYSND---PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQD 224 (344)
T ss_pred cccceeeccccceeeeEEcCC---CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecC
Confidence 332211111 11445555553 456777777788999988754 332 2 3444556668889987765 58999999
Q ss_pred CcEEEEEccCC
Q 013274 213 GAIRFWDIRRA 223 (446)
Q Consensus 213 g~I~iWd~~~~ 223 (446)
|++.|||+|..
T Consensus 225 g~~~I~DVR~~ 235 (344)
T KOG4532|consen 225 GTCAIYDVRNM 235 (344)
T ss_pred CcEEEEEeccc
Confidence 99999999863
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=4.4e-05 Score=75.06 Aligned_cols=218 Identities=11% Similarity=0.069 Sum_probs=118.3
Q ss_pred EeEEEEeecCCcE--E-EEEeCCCe--EEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC----CCcEEEEe
Q 013274 106 ISSAIWYPVDTGL--F-VTGSYDHY--VKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE----DVQVRLCD 176 (446)
Q Consensus 106 V~~~~~~~~~~~~--l-~s~s~D~~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~----d~~v~vwd 176 (446)
+.+-.|+| |++. + ++...++. |.+.++.+++........+......++|++. .++.+... +-.+..||
T Consensus 187 ~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~--~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 187 SITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK--LLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred cccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC--EEEEEECCCCCcceeEEEee
Confidence 33457887 6643 2 34444444 6666787776544333445555567777543 33333322 22344477
Q ss_pred CCCC---ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC---ceeEEeecccccccCCCcccccceeec
Q 013274 177 IASG---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA---GCFRVLDQSQSQLGRRPPLLKRKVSIS 250 (446)
Q Consensus 177 ~~~~---~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (446)
+..+ .......++.+.....+|+|+++.++.+...+|..+||.+.-. +..+
T Consensus 264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~----------------------- 320 (428)
T PRK01029 264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR----------------------- 320 (428)
T ss_pred cccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE-----------------------
Confidence 7653 3222333333445678999999976555556777677754210 0000
Q ss_pred cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC
Q 013274 251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD 330 (446)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D 330 (446)
....+.+.+....|||||++|+..+.+
T Consensus 321 -----------------------------------------------------~lt~~~~~~~~p~wSPDG~~Laf~~~~ 347 (428)
T PRK01029 321 -----------------------------------------------------LLTKKYRNSSCPAWSPDGKKIAFCSVI 347 (428)
T ss_pred -----------------------------------------------------EeccCCCCccceeECCCCCEEEEEEcC
Confidence 000112234567899999988765543
Q ss_pred ---CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CC---CceEEEEeecCceEEEecccccceEEEE
Q 013274 331 ---SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CM---TAVKAFDIWSGKTCLTFRGHYEYVNCCC 403 (446)
Q Consensus 331 ---~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~d~~~~~~~~~l~gH~~~v~~~~ 403 (446)
..|.+||+.+++..... ..........++|++..++.. .. ..+.++++..++..... ...+.+...+
T Consensus 348 ~g~~~I~v~dl~~g~~~~Lt-----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~ 421 (428)
T PRK01029 348 KGVRQICVYDLATGRDYQLT-----TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPS 421 (428)
T ss_pred CCCcEEEEEECCCCCeEEcc-----CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCce
Confidence 46899999887543211 111122346678888766543 22 34666777666543333 3444556677
Q ss_pred EcCCC
Q 013274 404 FSSQD 408 (446)
Q Consensus 404 fSpd~ 408 (446)
|||-.
T Consensus 422 Ws~~~ 426 (428)
T PRK01029 422 WGAFP 426 (428)
T ss_pred ecCCC
Confidence 77643
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.58 E-value=7.6e-05 Score=72.48 Aligned_cols=257 Identities=13% Similarity=0.091 Sum_probs=143.8
Q ss_pred CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC
Q 013274 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC 135 (446)
Q Consensus 56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 135 (446)
+..++.++.|+.+..+|.++++..= +.. -...+.+.... .++.++.++.|+.+..||.++
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W----------------~~~--~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~t 164 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELW----------------RAK--LSSEVLSPPLV--ANGLVVVRTNDGRLTALDAAT 164 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEee----------------eec--cCceeecCCEE--ECCEEEEECCCCeEEEEEcCC
Confidence 3457778889999999987765310 000 00111111111 234677778899999999999
Q ss_pred CeeeEEEecCCceEEee--eccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC--C--------Ce-EEEEEecCC
Q 013274 136 TRVVMNFKMPGKVYRTA--MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR--D--------GI-MTVEWSTSS 202 (446)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~--~--------~v-~sv~~s~~~ 202 (446)
++.+..+.......... .+|...+ ..++.+..++.+..+|+++|+.+....-.. + .+ .+..+. +
T Consensus 165 G~~~W~~~~~~~~~~~~~~~sp~~~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~ 241 (377)
T TIGR03300 165 GERLWTYSRVTPALTLRGSASPVIAD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G 241 (377)
T ss_pred CceeeEEccCCCceeecCCCCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--C
Confidence 99887766543322111 1222112 256677788999999999998766543110 0 01 111122 3
Q ss_pred CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274 203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 282 (446)
Q Consensus 203 ~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (446)
.. ++.++.+|.+..||+.+++..-..+
T Consensus 242 ~~-vy~~~~~g~l~a~d~~tG~~~W~~~---------------------------------------------------- 268 (377)
T TIGR03300 242 GQ-VYAVSYQGRVAALDLRSGRVLWKRD---------------------------------------------------- 268 (377)
T ss_pred CE-EEEEEcCCEEEEEECCCCcEEEeec----------------------------------------------------
Confidence 33 4567788999999987664211100
Q ss_pred eeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEE
Q 013274 283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA 362 (446)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (446)
... .... ..++..+..++.|+.|..+|..+++.... .... .........
T Consensus 269 ----------------------~~~----~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~-~~~~--~~~~~ssp~ 317 (377)
T TIGR03300 269 ----------------------ASS----YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWK-NDEL--KYRQLTAPA 317 (377)
T ss_pred ----------------------cCC----ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEc-cccc--cCCccccCE
Confidence 000 0011 12345666677899999999988753211 1111 000000011
Q ss_pred EcCCCcEEEEe-CCCceEEEEeecCceEEEecccccceE-EEEEcCCCCEEEEeeCCCcEEEe
Q 013274 363 TTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVN-CCCFSSQDQELYTGGNDRQILVW 423 (446)
Q Consensus 363 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH~~~v~-~~~fSpd~~~lvtgs~D~~v~vW 423 (446)
. .+..+++. ....+.++|..+++.+-.+..+...+. .-++ .++ .|+.++.||.|..|
T Consensus 318 i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~-~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 318 V--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVV-VGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred E--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEE-ECC-EEEEEeCCceEEEe
Confidence 1 12344444 445788999999999888887665433 3333 344 57788999988765
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.55 E-value=1.3e-06 Score=80.19 Aligned_cols=107 Identities=17% Similarity=0.288 Sum_probs=81.3
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee-eCCCCCeEEEE
Q 013274 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHRDGIMTVE 197 (446)
Q Consensus 119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l-~~h~~~v~sv~ 197 (446)
.-.++++..+.+|....+.+...+.+-..+..++++++. .+|+++..|+.|++-....-..+..+ .||..-|..++
T Consensus 125 ~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~---~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 125 ADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDD---QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred EeecCCceeeeeecccccCcchhhhhhhhhheeeecCCC---CEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 345677788888887765555444444456788888864 58899999999999877655455444 58999999999
Q ss_pred EecCCCeEEEEeeCCCcEEEEEccCCceeEEee
Q 013274 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (446)
Q Consensus 198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~ 230 (446)
.-++. .|+|+|.|+++++||+++++++..++
T Consensus 202 l~~~~--~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 202 LTDNY--LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eccCc--eeeecCCCCcEEEEecccCCcccccc
Confidence 88653 47899999999999999998875554
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=0.00072 Score=61.83 Aligned_cols=275 Identities=10% Similarity=0.149 Sum_probs=158.2
Q ss_pred CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC---CCeEEEEECCC--Cee-
Q 013274 65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNC--TRV- 138 (446)
Q Consensus 65 Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~---D~~i~iWd~~~--~~~- 138 (446)
++-|.+|++.+.+- .+... ....+...++-+.+.+ +.+.|.++-. ++.|--+.++. |.+
T Consensus 15 s~gI~v~~ld~~~g-----~l~~~---------~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt 79 (346)
T COG2706 15 SQGIYVFNLDTKTG-----ELSLL---------QLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLT 79 (346)
T ss_pred CCceEEEEEeCccc-----ccchh---------hhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEE
Confidence 56799999874321 11000 0113344556677776 5667766644 47777777664 443
Q ss_pred -eEEEecCCce-EEeeeccCCCCceEEEEe-eCCCcEEEEeCCC-Ccee--eeeeCCCCC----------eEEEEEecCC
Q 013274 139 -VMNFKMPGKV-YRTAMSPLAASHMLIAAG-TEDVQVRLCDIAS-GAIS--QTLSGHRDG----------IMTVEWSTSS 202 (446)
Q Consensus 139 -~~~~~~~~~~-~~~~~~~~~~~~~~lasg-s~d~~v~vwd~~~-~~~~--~~l~~h~~~----------v~sv~~s~~~ 202 (446)
+.....++.. ..+++.+. ..+++++ ..-+.|.++-++. |.+. ..+..|.+. +-++.|.|++
T Consensus 80 ~ln~~~~~g~~p~yvsvd~~---g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 80 FLNRQTLPGSPPCYVSVDED---GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred EeeccccCCCCCeEEEECCC---CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence 2222333332 44555543 2344444 4567899998865 4332 123345555 7888999999
Q ss_pred CeEEEEee-CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274 203 EWILVTGG-CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 281 (446)
Q Consensus 203 ~~~l~S~s-~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (446)
+++ ++.. .--.|.+|++..++.. ..+.
T Consensus 157 ~~l-~v~DLG~Dri~~y~~~dg~L~-~~~~-------------------------------------------------- 184 (346)
T COG2706 157 RYL-VVPDLGTDRIFLYDLDDGKLT-PADP-------------------------------------------------- 184 (346)
T ss_pred CEE-EEeecCCceEEEEEcccCccc-cccc--------------------------------------------------
Confidence 875 4443 2235888888643210 0000
Q ss_pred ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEEEEecCcCceeeeeee---EEE--ee-
Q 013274 282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLVNFE---TVR--LQ- 354 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~lWd~~~~~~~~~~~~---~~~--~~- 354 (446)
..+.+ ..--+-|.|+|+|++. +..=-+++|-+|........+..++ .+. +.
T Consensus 185 ----------~~v~~------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 185 ----------AEVKP------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred ----------cccCC------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 00000 1124668999999964 3456789999998876322222111 111 11
Q ss_pred cCCCeEEEEcCCCcEEEEeC--CCceEEEEeecC--ce--EEEecccccceEEEEEcCCCCEEEEeeCC-CcEEEe--CC
Q 013274 355 TSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSG--KT--CLTFRGHYEYVNCCCFSSQDQELYTGGND-RQILVW--CP 425 (446)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~--~~--~~~l~gH~~~v~~~~fSpd~~~lvtgs~D-~~v~vW--~~ 425 (446)
......+..++++..+++.. .+.+.++.+... ++ ......|.....++.|+|++++|+.+..| .+|.|+ ++
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 12345678899999988864 357777777543 22 23334455557899999999999876654 568888 55
Q ss_pred CCCCCC
Q 013274 426 SRHISD 431 (446)
Q Consensus 426 ~~~~~~ 431 (446)
+++.+.
T Consensus 323 ~TG~L~ 328 (346)
T COG2706 323 ETGRLT 328 (346)
T ss_pred CCceEE
Confidence 555543
No 272
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=2.3e-06 Score=81.83 Aligned_cols=169 Identities=11% Similarity=0.159 Sum_probs=112.9
Q ss_pred CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (446)
Q Consensus 42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s 121 (446)
..+.+|++..++ ...+|++|..||.|..||..+..... .......+.........-.|+++.|.. ++=.++.
T Consensus 174 ~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~------~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aV 245 (703)
T KOG2321|consen 174 DSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVG------TLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAV 245 (703)
T ss_pred ccccceeeeecC-ccceEEecccCceEEEecchhhhhhe------eeecccccCCCccccccCcceEEEecC-CceeEEe
Confidence 458999999986 46689999999999999976432110 000000000001111233488888765 5888999
Q ss_pred EeCCCeEEEEECCCCeeeEEEecCC--ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEe
Q 013274 122 GSYDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199 (446)
Q Consensus 122 ~s~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s 199 (446)
|..+|.+.|+|+.+.+++..-.+.. ++..+.+.+.+ ....+++ .....++|||-.+|+....+.. ...+..+++.
T Consensus 246 Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~-~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~ 322 (703)
T KOG2321|consen 246 GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD-QQNKVVS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFV 322 (703)
T ss_pred eccCCcEEEEEcccCCceeecccCCccceeeecccccC-CCceEEe-cchHHhhhcccccCCceeeccc-cCCcCceeee
Confidence 9999999999999888766444322 34455554432 2334444 3456889999999998777764 3448899999
Q ss_pred cCCCeEEEEeeCCCcEEEEEccC
Q 013274 200 TSSEWILVTGGCDGAIRFWDIRR 222 (446)
Q Consensus 200 ~~~~~~l~S~s~Dg~I~iWd~~~ 222 (446)
|++. ++.++-.++.|..|=+..
T Consensus 323 p~sG-m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 323 PGSG-MFFTANESSKMHTYYIPS 344 (703)
T ss_pred cCCc-eEEEecCCCcceeEEccc
Confidence 9887 567888888887775543
No 273
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.49 E-value=8.5e-07 Score=94.81 Aligned_cols=156 Identities=17% Similarity=0.348 Sum_probs=104.1
Q ss_pred CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
+.|-..|.++.=.|. ..+-+|||.||+|++|.-..+.. |... .+ .|. ..|+.+.+.. .|..+
T Consensus 2205 k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~------------v~~~--rt-~g~-s~vtr~~f~~-qGnk~ 2266 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQ------------VVCF--RT-AGN-SRVTRSRFNH-QGNKF 2266 (2439)
T ss_pred ecccCceeeecCCCC-CceEEecCCCceEEEEeccCCCe------------EEEe--ec-cCc-chhhhhhhcc-cCCce
Confidence 334456667766664 45778999999999998654321 1111 00 133 5566666654 67788
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEe---eCCCcEEEEeCCCC-c--eeeeeeCCCCC
Q 013274 120 VTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAG---TEDVQVRLCDIASG-A--ISQTLSGHRDG 192 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasg---s~d~~v~vwd~~~~-~--~~~~l~~h~~~ 192 (446)
..+..||.+-+|.+. .++....+++.. ...+.|.. .+++++ +.++++.+||..-. . ++. ..|.+.
T Consensus 2267 ~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g 2338 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG 2338 (2439)
T ss_pred eeeccCCceeecccC-CcceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccceee--eecCCC
Confidence 889999999999986 444444444332 12222221 234443 45789999997533 2 333 679999
Q ss_pred eEEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (446)
Q Consensus 193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~ 222 (446)
++++++.|..+ +|+||+.+|.|++||+|.
T Consensus 2339 aT~l~~~P~~q-llisggr~G~v~l~D~rq 2367 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQ-LLISGGRKGEVCLFDIRQ 2367 (2439)
T ss_pred ceEEEEcCcce-EEEecCCcCcEEEeehHH
Confidence 99999999877 589999999999999985
No 274
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.46 E-value=9.6e-07 Score=76.41 Aligned_cols=209 Identities=13% Similarity=0.130 Sum_probs=113.6
Q ss_pred eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD 125 (446)
Q Consensus 46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D 125 (446)
|..+.|+ ....|+++-.++.+...+.-++.+........+..+...+......+.. ......+..++++..|
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~------~~~s~~~t~V~~~~~d 110 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPN------DACTMTDNRVCIGYAD 110 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCc------ccccccCCceEecCCC
Confidence 5566664 3456777777777766655443322111111112222222211111111 1111124578999999
Q ss_pred CeEEEEECCCCeee-EEEec-CCceEEeeeccCCCCceEEEEee-----CCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274 126 HYVKVWDTNCTRVV-MNFKM-PGKVYRTAMSPLAASHMLIAAGT-----EDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 126 ~~i~iWd~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~lasgs-----~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~ 198 (446)
+.+-+.+.+.-..+ .+... +....+..... -..++.++. .-+..++|+++..+....-.---+.|.+++-
T Consensus 111 g~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~---~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~ 187 (319)
T KOG4714|consen 111 GSLAVFSTDKDLALMSRIPSIHSGSASRKICR---HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCS 187 (319)
T ss_pred ceEEEEechHHHhhhhhcccccccccccceee---cccEEecCCcceEeeccceeeecccccccccccccccccchhhhC
Confidence 99999987641111 11100 00000001100 012233321 1235666766544322111112234888888
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (446)
.|..+.++++|+.||.+.+||.|+....
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p---------------------------------------------------- 215 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVAMP---------------------------------------------------- 215 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccccch----------------------------------------------------
Confidence 9988888899999999999999863100
Q ss_pred cccceeecCCccccccCCCcccccccccccccCeEEEEEccC-CCEEEEeecCCcEEEEecCc
Q 013274 279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~sgs~D~~i~lWd~~~ 340 (446)
...+.+|..++..+-|+|. +..|.++++||.+.-||..+
T Consensus 216 -----------------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 216 -----------------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -----------------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 0013578889999999984 67899999999999999775
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=6.1e-07 Score=85.20 Aligned_cols=174 Identities=18% Similarity=0.255 Sum_probs=115.4
Q ss_pred eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcC
Q 013274 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVK 262 (446)
Q Consensus 183 ~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (446)
+..+.||+..|.++.--.+ ++-++|++.|++|++|.++..+. .++
T Consensus 728 L~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD---------~~~------------------------- 772 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGD---------EIG------------------------- 772 (1034)
T ss_pred eecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccC---------ccc-------------------------
Confidence 4567899999998875433 34579999999999999874210 000
Q ss_pred CCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCc
Q 013274 263 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 342 (446)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~ 342 (446)
.-.......+|..+|..+.|-.+-+++++ -|+-|++||..-++
T Consensus 773 -----------------------------------tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr 815 (1034)
T KOG4190|consen 773 -----------------------------------TSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGR 815 (1034)
T ss_pred -----------------------------------cceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccc
Confidence 00011124578889999999999999876 48889999988765
Q ss_pred eeeeeeeEEEeecCCCeEEEEc-CCCcEEEEeCC--CceEEEEeecCceEEEe-----cccccceEEEEEcCCCCEEEEe
Q 013274 343 NTLVNFETVRLQTSKPIQLATT-QDPAVVFVPCM--TAVKAFDIWSGKTCLTF-----RGHYEYVNCCCFSSQDQELYTG 414 (446)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~d~~~~~~~~~l-----~gH~~~v~~~~fSpd~~~lvtg 414 (446)
.. .+.+....+.......+.. -+..++..+|. .+++.+|...++-...+ ++-..-+.|++..|.|.+++.+
T Consensus 816 ~L-aq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~ 894 (1034)
T KOG4190|consen 816 LL-AQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAA 894 (1034)
T ss_pred hh-HhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHH
Confidence 32 2122222222122222222 24444444433 57899998766544433 4556778899999999999999
Q ss_pred eCCCcEEEeCCCCCC
Q 013274 415 GNDRQILVWCPSRHI 429 (446)
Q Consensus 415 s~D~~v~vW~~~~~~ 429 (446)
=..|+|.+.|..++.
T Consensus 895 LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 895 LSNGCIAILDARNGK 909 (1034)
T ss_pred hcCCcEEEEecCCCc
Confidence 999999888877654
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=7.6e-05 Score=73.53 Aligned_cols=171 Identities=16% Similarity=0.197 Sum_probs=110.3
Q ss_pred CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccc-cceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKH-RSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
|.....+++.|+. +..||+.|+.||.++|-.+.+.+.-.. ..+. ...-++..+++.||+..|.-+.|.. +.+.|
T Consensus 12 PnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~---~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKL 86 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLN---KSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKL 86 (1189)
T ss_pred CCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCccc---ccccccccccchhhhhccCcceEEEEEecc-ccccc
Confidence 5567789999985 567999999999999999876543111 0010 1111234577899999999888876 56788
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce-eeeeeCCCCCeEE
Q 013274 120 VTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGIMT 195 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~-~~~l~~h~~~v~s 195 (446)
.|...+|-|.+|=+-.++...... -.+.+.++++..++ ..++....||.|.+=.++.+.. -+.+++. -...
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG---~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~h 161 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG---TKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAH 161 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC---cEEEEEEccCCEEEEeeccceecchhcchh--eccc
Confidence 889999999999775443211110 11224455555433 3456666677776666554432 2344432 2246
Q ss_pred EEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274 196 VEWSTSSEWILVTGGCDGAIRFWDIRR 222 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~ 222 (446)
+.|++|.+. +.-+-..|.+.+||...
T Consensus 162 v~ws~D~~~-~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 162 VLWSEDLEQ-ALFKKANGETHLYDNQG 187 (1189)
T ss_pred eeecccHHH-HHhhhcCCcEEEecccc
Confidence 789999875 44566779999999653
No 277
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.37 E-value=7e-05 Score=65.45 Aligned_cols=228 Identities=8% Similarity=0.052 Sum_probs=134.8
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccC-CCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL-AASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~ 194 (446)
-.+||.||.-|...+|...+.+..... +..+...+.+... ...+.-+..++.|+++++.+++-+.....+.-.+-.+.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~-cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQ-CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred ccEEEeccccceeeeecccCcccceee-ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 358999999999999998865543322 2222221111110 00122355667899999999876654444432223478
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN 274 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (446)
++.++++++| +++.+....|-+|.+......-.
T Consensus 163 s~~~snd~~~-~~~Vgds~~Vf~y~id~~sey~~---------------------------------------------- 195 (344)
T KOG4532|consen 163 SLHYSNDPSW-GSSVGDSRRVFRYAIDDESEYIE---------------------------------------------- 195 (344)
T ss_pred eeEEcCCCce-EEEecCCCcceEEEeCCccceee----------------------------------------------
Confidence 9999999987 67888778888887764321000
Q ss_pred ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274 275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 354 (446)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~ 354 (446)
++ ... ....| =-+..|+.....+|++..||++.|||++.....+......+..
T Consensus 196 --------~~--------~~a--------~t~D~---gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~ 248 (344)
T KOG4532|consen 196 --------NI--------YEA--------PTSDH---GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH 248 (344)
T ss_pred --------ee--------Eec--------ccCCC---ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCC
Confidence 00 000 00111 2345788888899999999999999998754333222221222
Q ss_pred cCCCeE-EEEcCCC---cEEEEeCCCceEEEEeecCceEE-------Eecccc-cceEEEEEcCCCCEEEEeeCCC
Q 013274 355 TSKPIQ-LATTQDP---AVVFVPCMTAVKAFDIWSGKTCL-------TFRGHY-EYVNCCCFSSQDQELYTGGNDR 418 (446)
Q Consensus 355 ~~~~~~-~~~~~~~---~~~~~~~~~~~~~~d~~~~~~~~-------~l~gH~-~~v~~~~fSpd~~~lvtgs~D~ 418 (446)
.....+ ..|++.+ .++++...+.+.+.|+.+++... .++.|. ..|..-.|+.++.-+...+++.
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh
Confidence 223333 3344322 23344455678899988776443 234443 4488888888887777666653
No 278
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.34 E-value=0.00018 Score=64.82 Aligned_cols=220 Identities=13% Similarity=0.114 Sum_probs=123.2
Q ss_pred CCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274 124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE 203 (446)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~ 203 (446)
++++|..||..+++.+....+..........+.. ....+.+++.++.+..||..+|+.+..+.- .+++.......++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~- 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG- 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-
Confidence 4689999999999998888763211111111111 122455667899999999999998877664 2222111122233
Q ss_pred eEEEEeeCCCcEEEEEccCCceeEEe-ecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274 204 WILVTGGCDGAIRFWDIRRAGCFRVL-DQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 282 (446)
Q Consensus 204 ~~l~S~s~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (446)
. ++.++.|+.+..+|+++++..-.+ ......
T Consensus 78 ~-v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~----------------------------------------------- 109 (238)
T PF13360_consen 78 R-VYVGTSDGSLYALDAKTGKVLWSIYLTSSPP----------------------------------------------- 109 (238)
T ss_dssp E-EEEEETTSEEEEEETTTSCEEEEEEE-SSCT-----------------------------------------------
T ss_pred c-cccccceeeeEecccCCcceeeeeccccccc-----------------------------------------------
Confidence 3 345567889999998887654331 100000
Q ss_pred eeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC-----
Q 013274 283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK----- 357 (446)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~----- 357 (446)
.. ....+.+..++..++.+..++.|..+|+++++.... + ......
T Consensus 110 -----------------------~~---~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~-~---~~~~~~~~~~~ 159 (238)
T PF13360_consen 110 -----------------------AG---VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK-Y---PVGEPRGSSPI 159 (238)
T ss_dssp -----------------------CS---TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE-E---ESSTT-SS--E
T ss_pred -----------------------cc---cccccCceEecCEEEEEeccCcEEEEecCCCcEEEE-e---ecCCCCCCcce
Confidence 00 001111222377777788899999999999864211 1 111100
Q ss_pred ------CeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274 358 ------PIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 429 (446)
Q Consensus 358 ------~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~ 429 (446)
...+.. .++ .++.... ..+..+|+.+++.+-... ...+..+ ..+++..|+.++.|+.|..||+.+++
T Consensus 160 ~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 160 SSFSDINGSPVI-SDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEETTEEEEEEC-CTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeecccccceEE-ECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 011222 233 4554443 333444888887543222 2222221 45778888888899999999998764
No 279
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=6.8e-07 Score=89.36 Aligned_cols=155 Identities=20% Similarity=0.236 Sum_probs=99.4
Q ss_pred eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~ 118 (446)
+.-|+..-+|++|+. +.++|+.|+..|.|+++|+.+|.... +..+|..+|+-+.-+ .++..
T Consensus 1097 frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~-----------------s~ncH~SavT~vePs-~dgs~ 1157 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEE-----------------SVNCHQSAVTLVEPS-VDGST 1157 (1516)
T ss_pred hhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccc-----------------ccccccccccccccc-CCcce
Confidence 556888899999985 67899999999999999998876421 234788877755443 35555
Q ss_pred EEE-EeCCC-eEEEEECCC-CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee-eeC---CCC
Q 013274 119 FVT-GSYDH-YVKVWDTNC-TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSG---HRD 191 (446)
Q Consensus 119 l~s-~s~D~-~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~-l~~---h~~ 191 (446)
+++ ++... -..+|++.. +.....|... .++.|+... ..-+.|+....+.+||++++....+ |.+ .+-
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed---~~vkFsn~~---q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFDED---KAVKFSNSL---QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred eeeeccccCchHHHhccccccCcccccccc---ceeehhhhH---HHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 544 44443 578999854 3334444322 123344321 1223445556799999999976655 322 222
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~ 224 (446)
.-..+.|+|.+..+| +|| .+||.|...
T Consensus 1232 ~~n~a~FsP~D~LIl----ndG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLIL----NDG--VLWDVRIPE 1258 (1516)
T ss_pred hccccccCCCcceEe----eCc--eeeeeccHH
Confidence 236788999988654 355 589998653
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.00037 Score=68.23 Aligned_cols=109 Identities=10% Similarity=0.077 Sum_probs=64.9
Q ss_pred EeEEEEeecCCcE-EEEEeC---CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC--CCcEEEEeCCC
Q 013274 106 ISSAIWYPVDTGL-FVTGSY---DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE--DVQVRLCDIAS 179 (446)
Q Consensus 106 V~~~~~~~~~~~~-l~s~s~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~--d~~v~vwd~~~ 179 (446)
.....|+| +++. ++..+. +..|.++|+.+++...-....+......++|++. .++++.+. +..|.++|+.+
T Consensus 190 ~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 190 NIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS--KLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred eEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC--EEEEEEccCCCcEEEEEECCC
Confidence 34556776 6663 554343 3568888998876554434445444556777543 34444333 45788889988
Q ss_pred CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEE
Q 013274 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218 (446)
Q Consensus 180 ~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iW 218 (446)
+.. +.+..+........|+|+++.++.+....+.-.||
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy 304 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIF 304 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEE
Confidence 763 34444444344567999999876666555543333
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=0.00084 Score=61.42 Aligned_cols=233 Identities=16% Similarity=0.243 Sum_probs=130.8
Q ss_pred CCeEEEEECCCCee----eEEEecCCceEEeeeccCCCCceEEEEee-C--CCcEEEEeCCC--Ccee--eeeeCCCCCe
Q 013274 125 DHYVKVWDTNCTRV----VMNFKMPGKVYRTAMSPLAASHMLIAAGT-E--DVQVRLCDIAS--GAIS--QTLSGHRDGI 193 (446)
Q Consensus 125 D~~i~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lasgs-~--d~~v~vwd~~~--~~~~--~~l~~h~~~v 193 (446)
+.-|.+|++++.+- +......+....+++.+. ...|.++- . ++.|..|.++. |.+- ........+-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~---~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD---QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC---CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 56799999874322 222222344555666653 33344442 2 56677666654 5432 1212222333
Q ss_pred EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG 273 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (446)
+.|++++++++++++--.-|.|.++-++..+.+..........+.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~----------------------------------- 136 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS----------------------------------- 136 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC-----------------------------------
Confidence 889999999876555445688999987653221110000000000
Q ss_pred CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe--ecCCcEEEEecCcCceeeeeeeEE
Q 013274 274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA--GSDSRIRLWDVESGRNTLVNFETV 351 (446)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg--s~D~~i~lWd~~~~~~~~~~~~~~ 351 (446)
+ .+ .. ....| +....|.|++++|++. +.| +|.+|++..++-.......+
T Consensus 137 --------------~-----p~----~r--Q~~~h---~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 137 --------------G-----PH----ER--QESPH---VHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred --------------C-----CC----cc--ccCCc---cceeeeCCCCCEEEEeecCCc-eEEEEEcccCcccccccccc
Confidence 0 00 00 00112 5566799999998876 556 49999998765322211111
Q ss_pred EeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeecC-ceEEEeccc---------ccceEEEEEcCCCCEEEEeeC-CC
Q 013274 352 RLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSG-KTCLTFRGH---------YEYVNCCCFSSQDQELYTGGN-DR 418 (446)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~-~~~~~l~gH---------~~~v~~~~fSpd~~~lvtgs~-D~ 418 (446)
.....+=.++|.|++.+.++.+ .+.|.+|.+... ..+..++.+ ..+...+.+||||++|+.+-. ..
T Consensus 188 -~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d 266 (346)
T COG2706 188 -KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD 266 (346)
T ss_pred -CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence 1123556789999999887765 468899988763 223333322 345778999999999997655 23
Q ss_pred cEEEeCC
Q 013274 419 QILVWCP 425 (446)
Q Consensus 419 ~v~vW~~ 425 (446)
.|-++.+
T Consensus 267 sI~~f~V 273 (346)
T COG2706 267 SIAVFSV 273 (346)
T ss_pred eEEEEEE
Confidence 5666643
No 282
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.28 E-value=0.00041 Score=65.99 Aligned_cols=324 Identities=16% Similarity=0.162 Sum_probs=169.3
Q ss_pred CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (446)
Q Consensus 42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s 121 (446)
-.-++..+++|| .|.+|++.- -..|.+|........ +. .-|. .|.-+-++| ++++|.|
T Consensus 31 ~~~p~~~~~~SP-~G~~l~~~~-~~~V~~~~g~~~~~l-----------~~-------~~~~-~V~~~~fSP-~~kYL~t 88 (561)
T COG5354 31 ENWPVAYVSESP-LGTYLFSEH-AAGVECWGGPSKAKL-----------VR-------FRHP-DVKYLDFSP-NEKYLVT 88 (561)
T ss_pred cCcchhheeecC-cchheehhh-ccceEEccccchhhe-----------ee-------eecC-CceecccCc-ccceeee
Confidence 446788999997 578887653 345999986543210 00 0121 233444554 5667766
Q ss_pred EeCC---------------CeEEEEECCCCeeeEEEecCCceE----EeeeccCCCCceEEEEeeCCCcEEEEeCCCCce
Q 013274 122 GSYD---------------HYVKVWDTNCTRVVMNFKMPGKVY----RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (446)
Q Consensus 122 ~s~D---------------~~i~iWd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~ 182 (446)
=++- ..+.+||..++..+..+......+ -+.++.++ .++|-- ....++|+++ ++..
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D---~y~ARv-v~~sl~i~e~-t~n~ 163 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD---KYVARV-VGSSLYIHEI-TDNI 163 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc---hhhhhh-ccCeEEEEec-CCcc
Confidence 5543 359999999999988876543321 12333322 222211 2346999997 4321
Q ss_pred ----eeeeeCCCCCeEEEEEecCCCe-EEE-----EeeCCCcEEEEEccCCceeEEe---ecccccccCCCcccccceee
Q 013274 183 ----SQTLSGHRDGIMTVEWSTSSEW-ILV-----TGGCDGAIRFWDIRRAGCFRVL---DQSQSQLGRRPPLLKRKVSI 249 (446)
Q Consensus 183 ----~~~l~~h~~~v~sv~~s~~~~~-~l~-----S~s~Dg~I~iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 249 (446)
...++ ...+..-.|+|.+.. .|+ ....++.+++|.+..+..+..- +...-++ .... .....+
T Consensus 164 ~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL--kW~~-~g~~ll 238 (561)
T COG5354 164 EEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL--KWQV-LGKYLL 238 (561)
T ss_pred ccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE--EEec-CCceEE
Confidence 22222 345677778876321 223 2356778888888755433221 1000000 0000 000000
Q ss_pred ccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccc-cccccCeEEEEEccCCCE--EEE
Q 013274 250 SKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRA-TAHYGAVTGLKVTEDGMY--LLS 326 (446)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~--l~s 326 (446)
....+. ...+.++.+. +...-+. +. ....+. ..-.++|...+|.|.+.. +++
T Consensus 239 ~l~~t~---------~ksnKsyfge----snLyl~~--------~~----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 239 VLVMTH---------TKSNKSYFGE----SNLYLLR--------IT----ERSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred EEEEEe---------eecccceecc----ceEEEEe--------ec----ccccceeccccccceeeeecccCCceeEEe
Confidence 000000 0000000000 0000000 00 000111 144688999999998875 456
Q ss_pred eecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC----CceEEEEeecCceEE-EecccccceEE
Q 013274 327 AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCL-TFRGHYEYVNC 401 (446)
Q Consensus 327 gs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~-~l~gH~~~v~~ 401 (446)
|-.+..+-++|+... +. +. +.......+.|+|....++.++- ..+.+||...+-.+. .+.|-. ..-
T Consensus 294 g~~pa~~s~~~lr~N---l~-~~---~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~ 364 (561)
T COG5354 294 GYMPASVSVFDLRGN---LR-FY---FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSY 364 (561)
T ss_pred cccccceeecccccc---eE-Ee---cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceE
Confidence 678999999998764 11 10 01112334567777777766543 367888876665444 555443 345
Q ss_pred EEEcCCCCEEEEe------eCCCcEEEeCCCCCCCC
Q 013274 402 CCFSSQDQELYTG------GNDRQILVWCPSRHISD 431 (446)
Q Consensus 402 ~~fSpd~~~lvtg------s~D~~v~vW~~~~~~~~ 431 (446)
+.||||++++.+. -.|..|+||+..+....
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 7899999998753 23789999998766543
No 283
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=4.4e-06 Score=75.19 Aligned_cols=100 Identities=17% Similarity=0.305 Sum_probs=68.8
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-----ceeeeeeCCCCCeE
Q 013274 120 VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-----AISQTLSGHRDGIM 194 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-----~~~~~l~~h~~~v~ 194 (446)
++.|.+-.|-+-|++++-.. .|...+.++...|.. ...++..|+.+|.|...|++.+ .+...+. |...|+
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~---s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAG---SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVT 302 (425)
T ss_pred ecccccceeEEEEeeccccc-ccccchhHHHHHhcc---cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchh
Confidence 55566667777777665432 222333444444443 3458999999999999999875 2334443 888999
Q ss_pred EEEEec-CCCeEEEEeeCCCcEEEEEccCCce
Q 013274 195 TVEWST-SSEWILVTGGCDGAIRFWDIRRAGC 225 (446)
Q Consensus 195 sv~~s~-~~~~~l~S~s~Dg~I~iWd~~~~~~ 225 (446)
++..-. +++. |++.+.+|+|++||+|.-+|
T Consensus 303 slq~Lq~s~q~-LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 303 SLQILQFSQQK-LMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred hhhhhccccce-EeeccCcCceeEeeehhhhc
Confidence 988655 5554 67888999999999987655
No 284
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.24 E-value=3.2e-05 Score=68.86 Aligned_cols=172 Identities=14% Similarity=0.294 Sum_probs=95.7
Q ss_pred ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCc--CCCCCCccccccceEEecccccc--CccccEeEEEEeec-CCc
Q 013274 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--DYEGGGHIAKHRSVFVVDKQHEH--GHKYAISSAIWYPV-DTG 117 (446)
Q Consensus 43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~~~~~~~-~~~ 117 (446)
...|+++-|.. .|.||++|...|.|.++.-+.-. .++.-.+..++..-+ ..+. .-...|..+.|+.. ...
T Consensus 26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EF----DYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEF----DYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccch----hhhhhccHHHHhhheeeecCCCcc
Confidence 46789999975 57899999999999999654321 111100111111000 0000 01123555666643 234
Q ss_pred EEEEEeCCCeEEEEECCCCe-------------------e------eEEEecCC-------------------ceEEeee
Q 013274 118 LFVTGSYDHYVKVWDTNCTR-------------------V------VMNFKMPG-------------------KVYRTAM 153 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~-------------------~------~~~~~~~~-------------------~~~~~~~ 153 (446)
.++-...|++|++|.+-... + +..-++.. +++++++
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 67777889999999863210 0 00000000 1222222
Q ss_pred ccCCCCceEEEEeeCCCcEEEEeCCCCc---eeeeeeCCC-----CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274 154 SPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHR-----DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (446)
Q Consensus 154 ~~~~~~~~~lasgs~d~~v~vwd~~~~~---~~~~l~~h~-----~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~ 223 (446)
-. +...+++ ..|-.|-+|+++-.. -+.-++.|. .-|++..|+|....++.-.+.-|.|++-|+|+.
T Consensus 181 Ns---D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 181 NS---DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred cC---chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 22 2223333 457788999986442 233344443 347888999987766777777899999999853
No 285
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=0.00074 Score=64.99 Aligned_cols=191 Identities=18% Similarity=0.266 Sum_probs=109.9
Q ss_pred hhhhhhhhcccceeccccceeEe-CCCccceeEEEeecC-CCCEEEE-----eeCCCcEEEEEcccCcCCCCCCcccccc
Q 013274 17 SFANRVKSHRLSTLQLSNYKEIV-SPHKGSINSLQVDLT-EERYLLS-----GASDSSVAVYDVQRATDYEGGGHIAKHR 89 (446)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~~~~-~~H~~~v~~l~~s~~-~~~~l~s-----~s~Dg~i~lWd~~~~~~~~~~~~~~~~~ 89 (446)
.+++|+-...+.-++...++.+. +=|...|+.+.+||. ...++|+ +|.=+.|+||........... ..+
T Consensus 138 sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~----a~k 213 (566)
T KOG2315|consen 138 SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV----ANK 213 (566)
T ss_pred hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh----hhc
Confidence 34444444455555555554442 246778999999875 3345554 344567999976421100000 000
Q ss_pred ceEEeccccccCccccEeEEEEeecCCcEE--EEEeCCC---------eEEEEECCCCeeeEEEecCCceEEeeeccCCC
Q 013274 90 SVFVVDKQHEHGHKYAISSAIWYPVDTGLF--VTGSYDH---------YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAA 158 (446)
Q Consensus 90 ~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l--~s~s~D~---------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (446)
..+. ...| .+.|......+| ++..-|+ ++.+.++....+...+.-.|+++++.|.+.+.
T Consensus 214 sFFk---------adkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 214 SFFK---------ADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGR 283 (566)
T ss_pred cccc---------ccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCC
Confidence 0000 0111 234443333333 2323333 57777777555555555678999999998653
Q ss_pred CceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEe--eCCCcEEEEEccCCce
Q 013274 159 SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTG--GCDGAIRFWDIRRAGC 225 (446)
Q Consensus 159 ~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~--s~Dg~I~iWd~~~~~~ 225 (446)
..-++.|-.-..+.|+|++.. ++..+ .+++=.++-|+|.++.++++| .--|.|-+||..+.++
T Consensus 284 -EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~ 348 (566)
T KOG2315|consen 284 -EFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL 348 (566)
T ss_pred -EEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence 345666777778999998654 44444 346667889999998655443 2348999999876543
No 286
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.24 E-value=0.0043 Score=58.64 Aligned_cols=255 Identities=12% Similarity=0.057 Sum_probs=132.6
Q ss_pred eecCCCCEEEEee---------CCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274 51 VDLTEERYLLSGA---------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (446)
Q Consensus 51 ~s~~~~~~l~s~s---------~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s 121 (446)
+||++..+.++.+ .+..|.+||+++.+... .+. +....+... -.......++| |+++++.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~---~i~------~p~~p~~~~-~~~~~~~~ls~-dgk~l~V 121 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA---DIE------LPEGPRFLV-GTYPWMTSLTP-DNKTLLF 121 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe---EEc------cCCCchhhc-cCccceEEECC-CCCEEEE
Confidence 7875444444445 68899999998765321 000 000000000 00011233444 8888776
Q ss_pred Ee-C-CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-Ccee-ee---eeCCCCCeE
Q 013274 122 GS-Y-DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAIS-QT---LSGHRDGIM 194 (446)
Q Consensus 122 ~s-~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-~~~~-~~---l~~h~~~v~ 194 (446)
.- . +..|-+.|+.+++.+..+..++...-...+. .. +...|.|+......+++ |+.. .. +.+-..++.
T Consensus 122 ~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e---~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~ 196 (352)
T TIGR02658 122 YQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN---DT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI 196 (352)
T ss_pred ecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC---Cc--cEEEeecCceEEEEecCCCceEEeeeeeecCCccccc
Confidence 55 3 7999999999999999888766432222211 11 22334466555544432 2211 11 111001110
Q ss_pred E-EEEec-CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274 195 T-VEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272 (446)
Q Consensus 195 s-v~~s~-~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (446)
. -.|.+ +++++++|.. |+|.+-|+...+... ...
T Consensus 197 ~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~-~~~----------------------------------------- 232 (352)
T TIGR02658 197 NHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKF-LPA----------------------------------------- 232 (352)
T ss_pred cCCceEcCCCcEEEEecC--CeEEEEecCCCccee-cce-----------------------------------------
Confidence 0 03455 7776555433 999999975432110 000
Q ss_pred CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee----------cCCcEEEEecCcCc
Q 013274 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG----------SDSRIRLWDVESGR 342 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs----------~D~~i~lWd~~~~~ 342 (446)
......+.....+. .+.+--++++++|++|.... ..+.|.++|..+++
T Consensus 233 ---------~~~~~~~~~~~~wr-------------P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 233 ---------IEAFTEAEKADGWR-------------PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred ---------eeeccccccccccC-------------CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence 00000000000001 11233388999998766532 22579999998865
Q ss_pred eeeeeeeEEEeecCCCeEEEEcCCCc-EEEEeC--CCceEEEEeecCceEEEe
Q 013274 343 NTLVNFETVRLQTSKPIQLATTQDPA-VVFVPC--MTAVKAFDIWSGKTCLTF 392 (446)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~d~~~~~~~~~l 392 (446)
... .+. -...+..+++++|+. .+++.. .+.+.++|..+++.++++
T Consensus 291 vi~----~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 291 RLR----KIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEE----EEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 321 111 123456789999998 777654 356999999999888776
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=4.9e-06 Score=74.92 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=102.8
Q ss_pred EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC-
Q 013274 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT- 136 (446)
Q Consensus 58 ~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~- 136 (446)
+-++.+.+..|-+-|++++-. +.+ +-++.|.+..|.. .+.++..|...|.|...|+..+
T Consensus 226 yhfs~G~sqqv~L~nvetg~~------------------qsf-~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGHQ------------------QSF-QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred eeecccccceeEEEEeecccc------------------ccc-ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecc
Confidence 446777888888888876521 111 2455666666654 3568999999999999999754
Q ss_pred ----eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce---eeeeeCCCCCeEEEEE--ecCCCeEEE
Q 013274 137 ----RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---SQTLSGHRDGIMTVEW--STSSEWILV 207 (446)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~---~~~l~~h~~~v~sv~~--s~~~~~~l~ 207 (446)
-+...+-++..+.++..-. .+...|.+++.+|.|++||++--++ ++++.||...-.-+-+ .+.. .+++
T Consensus 286 qG~~~~a~rlyh~Ssvtslq~Lq--~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~ 362 (425)
T KOG2695|consen 286 QGNGWCAQRLYHDSSVTSLQILQ--FSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIF 362 (425)
T ss_pred cCCCcceEEEEcCcchhhhhhhc--cccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEE
Confidence 2444455555555444332 2345677778899999999986555 8899999765544433 3333 3577
Q ss_pred EeeCCCcEEEEEccCCceeEEe
Q 013274 208 TGGCDGAIRFWDIRRAGCFRVL 229 (446)
Q Consensus 208 S~s~Dg~I~iWd~~~~~~~~~~ 229 (446)
+++.|...|||.++.+..+..+
T Consensus 363 s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred EccCeeEEEEEecccCceeecc
Confidence 8999999999999987765544
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.16 E-value=0.0019 Score=61.11 Aligned_cols=123 Identities=19% Similarity=0.259 Sum_probs=94.2
Q ss_pred CccccEeEEEEeecCCcEEEEEeCCC-eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC
Q 013274 101 GHKYAISSAIWYPVDTGLFVTGSYDH-YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS 179 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~~~l~s~s~D~-~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~ 179 (446)
+|++.|.-..+.. ++.-++.|-.|+ .+-|+|..+++..+....-+.+.++..+++ +..++.+.....+-+.|+++
T Consensus 357 ~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~d---GK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPD---GKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCC---CcEEEEEcCceEEEEEEecC
Confidence 5666676655543 455788888898 999999999887766666678888888874 45678888888899999999
Q ss_pred CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCC----CcEEEEEccCCceeEE
Q 013274 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD----GAIRFWDIRRAGCFRV 228 (446)
Q Consensus 180 ~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D----g~I~iWd~~~~~~~~~ 228 (446)
++....=+.-.+-|+...|+|+++|+ |-+=-+ ..|+++|+.+++.+..
T Consensus 433 gnv~~idkS~~~lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 433 GNVRLIDKSEYGLITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred CCeeEecccccceeEEEEEcCCceeE-EEecCcceeeeeEEEEecCCCeEEEe
Confidence 98766656677889999999999874 544333 4699999988775543
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.15 E-value=2.1e-05 Score=69.94 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=75.8
Q ss_pred cccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec----CCCeEEEEcCCCcEE--EEeCCCceE
Q 013274 306 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT----SKPIQLATTQDPAVV--FVPCMTAVK 379 (446)
Q Consensus 306 ~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~ 379 (446)
.+|.--|+++.|..|...++|+ .|-+|.+|+++-....+..+......+ ......-+.|....+ ++.+.+.++
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 4677779999999999988875 688999999876432221111100001 111223344443332 334456778
Q ss_pred EEEeecCce----------------EEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 380 AFDIWSGKT----------------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 380 ~~d~~~~~~----------------~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
+-|+....+ +.-|.+-...|.++.||++|+++++-+. -+|+||+..-.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 877753211 1123455678999999999999987654 68999998743
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.13 E-value=0.0028 Score=62.10 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=64.1
Q ss_pred eEEEEEccCCCEEE-EeecC--CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC----CceEEEEee
Q 013274 312 VTGLKVTEDGMYLL-SAGSD--SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIW 384 (446)
Q Consensus 312 v~~l~fs~dg~~l~-sgs~D--~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~ 384 (446)
.....|+|||+.|+ +.+.+ ..|.++|+.++..... ...........++||+..++..+. ..+.+.++.
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L-----T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI-----TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEc-----ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 44567999998654 33334 4577778877643211 111112334578899876555432 256667777
Q ss_pred cCceEE-EecccccceEEEEEcCCCCEEEEeeCC---------CcEEEeCCCCCCCC
Q 013274 385 SGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGND---------RQILVWCPSRHISD 431 (446)
Q Consensus 385 ~~~~~~-~l~gH~~~v~~~~fSpd~~~lvtgs~D---------~~v~vW~~~~~~~~ 431 (446)
+++..+ ++.+.. ...|||||++|+-.+.. ..|.+.+++++...
T Consensus 310 ~g~~~rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 310 SGSVEQVVFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CCCeEeCccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 766533 222322 24899999998865543 24666677665433
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.13 E-value=0.003 Score=56.18 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=79.7
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeE
Q 013274 49 LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYV 128 (446)
Q Consensus 49 l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i 128 (446)
+..+ ++|++||.- .|..|.|--.+++-.. .+. .. .+. ....-.-..++|+| |+.+||-+..-|+|
T Consensus 3 ~~~~-~~Gk~lAi~-qd~~iEiRsa~Ddf~s----i~~---kc-qVp----kD~~PQWRkl~WSp-D~tlLa~a~S~G~i 67 (282)
T PF15492_consen 3 LALS-SDGKLLAIL-QDQCIEIRSAKDDFSS----IIG---KC-QVP----KDPNPQWRKLAWSP-DCTLLAYAESTGTI 67 (282)
T ss_pred eeec-CCCcEEEEE-eccEEEEEeccCCchh----eeE---EE-ecC----CCCCchheEEEECC-CCcEEEEEcCCCeE
Confidence 3444 467766544 7888888765443110 000 00 000 11112234567876 88899999999999
Q ss_pred EEEECCCCeeeEEEec----CC----ceEEeeeccCCCCc---eEEEEeeCCCcEEEEeCCCC-----ceee--eeeC-C
Q 013274 129 KVWDTNCTRVVMNFKM----PG----KVYRTAMSPLAASH---MLIAAGTEDVQVRLCDIASG-----AISQ--TLSG-H 189 (446)
Q Consensus 129 ~iWd~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~---~~lasgs~d~~v~vwd~~~~-----~~~~--~l~~-h 189 (446)
+++|+... .+..++. .+ .+..+.|.....+. .-|+.-..+|.++-|-+..+ .... .+.. +
T Consensus 68 ~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y 146 (282)
T PF15492_consen 68 RVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY 146 (282)
T ss_pred EEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC
Confidence 99999753 3333321 11 12222232221111 12333445677766655322 2222 3333 4
Q ss_pred CCCeEEEEEecCCCeEEEEeeCCC
Q 013274 190 RDGIMTVEWSTSSEWILVTGGCDG 213 (446)
Q Consensus 190 ~~~v~sv~~s~~~~~~l~S~s~Dg 213 (446)
...|.++.++|..+.+++.|+...
T Consensus 147 p~Gi~~~vy~p~h~LLlVgG~~~~ 170 (282)
T PF15492_consen 147 PHGINSAVYHPKHRLLLVGGCEQN 170 (282)
T ss_pred CCceeEEEEcCCCCEEEEeccCCC
Confidence 779999999999886666666544
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.10 E-value=0.0072 Score=54.78 Aligned_cols=218 Identities=19% Similarity=0.236 Sum_probs=124.4
Q ss_pred EEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274 109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG 188 (446)
Q Consensus 109 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~ 188 (446)
..|.+.++.++++--..+.|..|+..++.... +..++ ...+.+.. .++.++++ .. +.+.++|+.+++....+..
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~--~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDR--PDGRLYVA-DS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEEC--TTSEEEEE-ET-TCEEEEETTTTEEEEEEEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEc--cCCEEEEE-Ec-CceEEEecCCCcEEEEeec
Confidence 34554467777777778999999998876543 44444 44444442 12334444 33 4456669998864333221
Q ss_pred -----CCCCeEEEEEecCCCeEEEEeeCC--------CcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274 189 -----HRDGIMTVEWSTSSEWILVTGGCD--------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA 255 (446)
Q Consensus 189 -----h~~~v~sv~~s~~~~~~l~S~s~D--------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (446)
.......+++.|++. +.++.... |.|..++.. ++. ..
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~--------------------------- 128 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKV-TV--------------------------- 128 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEE-EE---------------------------
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeE-EE---------------------------
Confidence 334567888999887 45554432 223333322 110 00
Q ss_pred CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEE
Q 013274 256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIR 334 (446)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~ 334 (446)
........+.|+|+||++.| ++-+..++|.
T Consensus 129 -------------------------------------------------~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~ 159 (246)
T PF08450_consen 129 -------------------------------------------------VADGLGFPNGIAFSPDGKTLYVADSFNGRIW 159 (246)
T ss_dssp -------------------------------------------------EEEEESSEEEEEEETTSSEEEEEETTTTEEE
T ss_pred -------------------------------------------------EecCcccccceEECCcchheeecccccceeE
Confidence 00112236789999999865 5778888999
Q ss_pred EEecCcCceeeeeeeE-EEeecC--CCeEEEEcCCCcEEEEe-CCCceEEEEeecCceEEEecccccceEEEEEc-CCCC
Q 013274 335 LWDVESGRNTLVNFET-VRLQTS--KPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS-SQDQ 409 (446)
Q Consensus 335 lWd~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fS-pd~~ 409 (446)
.+++......+..... ...... .+--++...++.+.++. ....+..++-. |+.+..+..-...+++|+|. ||.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence 9998643221111111 111122 24457777777665443 45678888865 88877776666689999994 7755
Q ss_pred EEE
Q 013274 410 ELY 412 (446)
Q Consensus 410 ~lv 412 (446)
.|+
T Consensus 239 ~L~ 241 (246)
T PF08450_consen 239 TLY 241 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.06 E-value=0.0062 Score=54.70 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=71.3
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee-eCCCC--
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHRD-- 191 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l-~~h~~-- 191 (446)
+++.+++++.++.+..||..+++.+..+.+++..... +...+ ..++.++.++.++.+|.++|+.++.. .....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVDG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEET-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeecc-cccccccceeeeEecccCCcceeeeecccccccc
Confidence 4567888899999999999999999888875543221 11112 23455557889999999999988874 33211
Q ss_pred ---CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeE
Q 013274 192 ---GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR 227 (446)
Q Consensus 192 ---~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~ 227 (446)
......+. +.. ++.+..++.|..+|+++++.+-
T Consensus 111 ~~~~~~~~~~~--~~~-~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 111 GVRSSSSPAVD--GDR-LYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp STB--SEEEEE--TTE-EEEEETCSEEEEEETTTTEEEE
T ss_pred ccccccCceEe--cCE-EEEEeccCcEEEEecCCCcEEE
Confidence 12233333 444 5667778999999999887543
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.05 E-value=2.4e-05 Score=77.22 Aligned_cols=115 Identities=21% Similarity=0.274 Sum_probs=72.2
Q ss_pred EeEEEEeecCCcEEEEEeCCCeEEEEECCCC-eeeEEEec--CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC--
Q 013274 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-RVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-- 180 (446)
Q Consensus 106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-- 180 (446)
+.++...| .+.-+|.++.-| +.+-|+... .+-+-+.+ +-.+..+.+++.......+++ .....-.+|++...
T Consensus 27 ~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 27 FNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKSSS 103 (1081)
T ss_pred ccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe-cCcchhhhhhhhcCCc
Confidence 33445555 455556666655 344455432 22221111 112334555554433334444 44556778998643
Q ss_pred -ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274 181 -AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (446)
Q Consensus 181 -~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~ 223 (446)
..-..+.||.-.|+.+.|.|..+-++++++.|-.+..||+|..
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 3345678999999999999999989999999999999999864
No 295
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=4.4e-05 Score=71.25 Aligned_cols=220 Identities=18% Similarity=0.151 Sum_probs=133.1
Q ss_pred CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe----cCCceEEeeeccCCCCceEEEEeeC-CCcEEEE
Q 013274 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK----MPGKVYRTAMSPLAASHMLIAAGTE-DVQVRLC 175 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lasgs~-d~~v~vw 175 (446)
-|...|+-+. +.-.+++.+++.|+.++.|--..-..+.-.. +.+.+.+++.+ .++.++.+.+. |+.++++
T Consensus 7 mhrd~i~hv~--~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S---~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVF--PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS---YDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEe--eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc---ccceeEeeccCcccceeEE
Confidence 3565565433 3356799999999999999643211111111 11222222222 34567888777 9999999
Q ss_pred eCCCCceee--eeeCCCCCeEEEEEecCCC--eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274 176 DIASGAISQ--TLSGHRDGIMTVEWSTSSE--WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK 251 (446)
Q Consensus 176 d~~~~~~~~--~l~~h~~~v~sv~~s~~~~--~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (446)
|+++-..+. .+.--.+.+..+. +|... .+.++.-.++.|-++|-+...|...+
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~---------------------- 138 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY---------------------- 138 (558)
T ss_pred EeeccchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccce----------------------
Confidence 998764332 1112223333332 33322 23334445788888886543210000
Q ss_pred ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274 252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS 331 (446)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~ 331 (446)
...-|..+|.++.+.+-+..++|+...|
T Consensus 139 ----------------------------------------------------fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 139 ----------------------------------------------------FKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred ----------------------------------------------------ecccccCceEEEEeeccccceeeccccc
Confidence 0124788999999999999999999999
Q ss_pred cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEE
Q 013274 332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL 411 (446)
Q Consensus 332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~l 411 (446)
.|..|..+.. ++..+. -.-|.+....-+..+..-+....++.|||++..+
T Consensus 167 mVEyWs~e~~---~qfPr~---------------------------~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qi 216 (558)
T KOG0882|consen 167 MVEYWSAEGP---FQFPRT---------------------------NLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQI 216 (558)
T ss_pred eeEeecCCCc---ccCccc---------------------------cccccccccchhhcccccccCccceEEccccCcc
Confidence 9999987631 100000 0012222222333444556778999999999999
Q ss_pred EEeeCCCcEEEeCCCCCCC
Q 013274 412 YTGGNDRQILVWCPSRHIS 430 (446)
Q Consensus 412 vtgs~D~~v~vW~~~~~~~ 430 (446)
.+-+.|..||++..-++.+
T Consensus 217 stl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 217 STLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred cccCcccEEEEEEeccchh
Confidence 9999999999998877654
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.02 E-value=2.1e-05 Score=68.30 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=63.2
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s 123 (446)
..|.+++-.|.-..+++.|+.||.+-+||......+ -.....|+.+++.+-|+|.++..|++++
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----------------~S~l~ahk~~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----------------VSLLKAHKAEIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccch----------------HHHHHHhhhhhhheeccCCCchheeEec
Confidence 358899988776778999999999999998765321 0123579999999999999999999999
Q ss_pred CCCeEEEEECCC
Q 013274 124 YDHYVKVWDTNC 135 (446)
Q Consensus 124 ~D~~i~iWd~~~ 135 (446)
.||.+-.||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999874
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.98 E-value=0.011 Score=52.70 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=30.2
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 395 HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 395 H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
..+.|..|..||||+.||+...+|.|.+|+++.
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 467899999999999999999999999998873
No 298
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.93 E-value=2.9e-05 Score=46.88 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=34.2
Q ss_pred ceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274 387 KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 424 (446)
Q Consensus 387 ~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~ 424 (446)
+....+..|...|+++.|+|+++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34567788999999999999999999999999999996
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=0.0028 Score=63.48 Aligned_cols=90 Identities=11% Similarity=0.244 Sum_probs=60.7
Q ss_pred eCCCccceeEEEeecCC-----------CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEe
Q 013274 39 VSPHKGSINSLQVDLTE-----------ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAIS 107 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~~-----------~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 107 (446)
+.-|+..|+.++|.|-. .-.||++.-.|.|.+||....... .....|...|.
T Consensus 51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-----------------~~l~~~~~~~q 113 (1062)
T KOG1912|consen 51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-----------------NWLSHSNDSVQ 113 (1062)
T ss_pred cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-----------------hhhcCCCcchh
Confidence 45688999999986421 225777777899999998654321 11234556667
Q ss_pred EEEEeec--CC-cEEEEEeCCCeEEEEECCCCeeeEEEecC
Q 013274 108 SAIWYPV--DT-GLFVTGSYDHYVKVWDTNCTRVVMNFKMP 145 (446)
Q Consensus 108 ~~~~~~~--~~-~~l~s~s~D~~i~iWd~~~~~~~~~~~~~ 145 (446)
.+.|.+. +. +.|+.-....++.+|+..+|+...++...
T Consensus 114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 7777652 23 56666666779999999998877666543
No 300
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.89 E-value=0.03 Score=54.71 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=67.9
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe--
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-- 193 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v-- 193 (446)
++.++.++.++.+..+|.++++.+......+...+. |.-.+ ..+..++.++.+..+|.++|+.+..+.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ss---P~v~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSR---PVVSD-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecC---CEEEC-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 456777888999999999999998877766544322 21112 245567778999999999999887765321110
Q ss_pred ---EEEEEecCCCeEEEEeeCCCcEEEEEccCCce
Q 013274 194 ---MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC 225 (446)
Q Consensus 194 ---~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~ 225 (446)
.+-... ++ . ++.++.+|.+.-.|..+++.
T Consensus 196 ~~~~sP~v~-~~-~-v~~~~~~g~v~a~d~~~G~~ 227 (394)
T PRK11138 196 RGESAPATA-FG-G-AIVGGDNGRVSAVLMEQGQL 227 (394)
T ss_pred cCCCCCEEE-CC-E-EEEEcCCCEEEEEEccCChh
Confidence 111111 22 3 34566788888888887754
No 301
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.87 E-value=0.027 Score=53.60 Aligned_cols=118 Identities=13% Similarity=0.118 Sum_probs=88.8
Q ss_pred cccccCeEEEEEccCCCEEEEeecCC-cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEe
Q 013274 306 TAHYGAVTGLKVTEDGMYLLSAGSDS-RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDI 383 (446)
Q Consensus 306 ~~h~~~v~~l~fs~dg~~l~sgs~D~-~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~ 383 (446)
.+|.+.|+-..+..++.-++-|..|| .+-++|..++..... ....+..-.+..++++..++++.. ..+-++|+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-----e~~lg~I~av~vs~dGK~~vvaNdr~el~vidi 430 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-----EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDI 430 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-----eCCccceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence 46777788888888888888999999 899999998753221 111234456778888876666544 46777889
Q ss_pred ecCceEEEecccccceEEEEEcCCCCEEEEeeCC----CcEEEeCCCCC
Q 013274 384 WSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND----RQILVWCPSRH 428 (446)
Q Consensus 384 ~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D----~~v~vW~~~~~ 428 (446)
.++.....=....+-|++++|||+++++|-+=.+ +.|++++.++.
T Consensus 431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 8888765556677889999999999999965544 67999998864
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.87 E-value=0.00044 Score=70.24 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=76.7
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~ 194 (446)
++..++-|+-...+...|+.+.+..+.......- +.+.. .++..+.+|...|+|.+-|.++.+.++++..|++.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc--eEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 4567888888888999999988777665543311 11111 2345788999999999999999999999999999998
Q ss_pred EEEEecCCCeEEEEee---------CCCcEEEEEccCC
Q 013274 195 TVEWSTSSEWILVTGG---------CDGAIRFWDIRRA 223 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s---------~Dg~I~iWd~~~~ 223 (446)
..... |+ +|+|++ .|.-|++||+|..
T Consensus 222 DfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 222 DFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred eeecc--CC-eEEEeecccccccccccchhhhhhhhhh
Confidence 87764 44 578887 3667888988864
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.82 E-value=0.00027 Score=71.71 Aligned_cols=151 Identities=20% Similarity=0.319 Sum_probs=105.4
Q ss_pred ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (446)
Q Consensus 45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~ 124 (446)
.|.=|+. +++++.+|..-|+|.+-|+++-+. .+++..|++.|..... .|.+|+|||.
T Consensus 179 ~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~-----------------iht~~aHs~siSDfDv---~GNlLitCG~ 235 (1118)
T KOG1275|consen 179 GVTIMRY---NNRNLFCGDTRGTVFLRDPNSFET-----------------IHTFDAHSGSISDFDV---QGNLLITCGY 235 (1118)
T ss_pred ceEEEEe---cCcEEEeecccceEEeecCCcCce-----------------eeeeeccccceeeeec---cCCeEEEeec
Confidence 3666655 368999999999999999875432 1334678888766443 5789999998
Q ss_pred ---------CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEe---CCCCc-eeeeeeCCCC
Q 013274 125 ---------DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD---IASGA-ISQTLSGHRD 191 (446)
Q Consensus 125 ---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd---~~~~~-~~~~l~~h~~ 191 (446)
|.-|+|||+...+.+..++.+-....+.|.|.-. ..++..+..|...+.| +.+.. ....+.....
T Consensus 236 S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~--t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s 313 (1118)
T KOG1275|consen 236 SMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLT--TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS 313 (1118)
T ss_pred ccccccccccchhhhhhhhhhhccCCcccccCchhhhhccccc--ceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence 4557999998776665555443334455666543 3567777889999999 33332 2233333445
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~ 221 (446)
.+++..++++++ .|+-|..+|.|.+|.-+
T Consensus 314 ~i~~fDiSsn~~-alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 314 GISAFDISSNGD-ALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cceeEEecCCCc-eEEEecccCcEeeecCC
Confidence 589999999887 57889999999999744
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.00043 Score=69.41 Aligned_cols=155 Identities=13% Similarity=0.184 Sum_probs=109.2
Q ss_pred ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (446)
Q Consensus 43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~ 122 (446)
...++|++++ +++|+-|..+|.|.+.+.+.... . ...|.. +..+|.+++||
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~~-----------~--------~~~~s~-------~~~~Gey~asC 89 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNPK-----------T--------NFDHSS-------SILEGEYVASC 89 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCccc-----------c--------cccccc-------cccCCceEEEe
Confidence 4678888885 47999999999999998753210 0 011221 13578999999
Q ss_pred eCCCeEEEEECCCCeeeEEEecCCceEEeeeccC--CCCceEEEEeeCCCcEEEEeCCC--CceeeeeeCCCCCeEEEEE
Q 013274 123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL--AASHMLIAAGTEDVQVRLCDIAS--GAISQTLSGHRDGIMTVEW 198 (446)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lasgs~d~~v~vwd~~~--~~~~~~l~~h~~~v~sv~~ 198 (446)
|.||+|.|-.+-+.+....+.....+.+++++|+ ......+++|+.-| +.++.-+- .+....+..-.++|.++.|
T Consensus 90 S~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 90 SDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW 168 (846)
T ss_pred cCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe
Confidence 9999999999988888888887778889999987 23345788888777 66664321 1112245666889999999
Q ss_pred ecCCCeEEEEeeCCCcEEEEEccCCceeEEeec
Q 013274 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231 (446)
Q Consensus 199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~ 231 (446)
. +. ++| -..|--|++||+.....+..+..
T Consensus 169 ~--g~-lIA-Wand~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 169 R--GN-LIA-WANDDGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred c--Cc-EEE-EecCCCcEEEeccccceeeccCC
Confidence 6 33 334 44455599999987766655543
No 305
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.68 E-value=0.12 Score=55.71 Aligned_cols=110 Identities=19% Similarity=0.302 Sum_probs=66.0
Q ss_pred eEEEEeecCCcEEEEEeC---C---CeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeC---CCcEEEEe
Q 013274 107 SSAIWYPVDTGLFVTGSY---D---HYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCD 176 (446)
Q Consensus 107 ~~~~~~~~~~~~l~s~s~---D---~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~---d~~v~vwd 176 (446)
..+.|-. ||.+||+.+. + ..+|||+-+ |.+..+.. ..|-...+++.|. +.+||+... ...|.+|.
T Consensus 213 ~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPs---G~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 213 VRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPS---GNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred eEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCC---CCEEEEEEEcCCCcEEEEEe
Confidence 3556765 8899988775 2 579999865 44332221 2222345566664 457777643 23455554
Q ss_pred CCCCceee--ee--eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc
Q 013274 177 IASGAISQ--TL--SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224 (446)
Q Consensus 177 ~~~~~~~~--~l--~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~ 224 (446)
- +|-.-. .+ ......|..+.|++++. +|+..-.| .|.+|-..+..
T Consensus 288 r-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~-~vqLWt~~NYH 336 (928)
T PF04762_consen 288 R-NGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLED-RVQLWTRSNYH 336 (928)
T ss_pred c-CCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecC-CceEEEeeCCE
Confidence 3 332222 22 24567899999999987 56655544 49999876654
No 306
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.65 E-value=1.5e-05 Score=77.59 Aligned_cols=172 Identities=18% Similarity=0.249 Sum_probs=106.7
Q ss_pred ceeEeCCCccceeEEEeecCCCCEEEEe----eCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEE
Q 013274 35 YKEIVSPHKGSINSLQVDLTEERYLLSG----ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAI 110 (446)
Q Consensus 35 ~~~~~~~H~~~v~~l~~s~~~~~~l~s~----s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~ 110 (446)
..++..+|....++++|++-|...||.| -.|..+.|||+.+.-.. ++..+.+.. ....| ..+++
T Consensus 94 s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv------Pke~~~fs~--~~l~g----qns~c 161 (783)
T KOG1008|consen 94 SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV------PKESPLFSS--STLDG----QNSVC 161 (783)
T ss_pred cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCC------Ccccccccc--ccccC----ccccc
Confidence 3566778999999999998777777776 23568999999876321 111111111 11122 22455
Q ss_pred EeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC-CCC-ceeeeeeC
Q 013274 111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-ASG-AISQTLSG 188 (446)
Q Consensus 111 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~-~~~-~~~~~l~~ 188 (446)
+. .+.+++.+|...+.+.++|+.........-.+.-+..+.+.|+.. .++++- .|+.|.+||. ..- .++.++..
T Consensus 162 wl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~--nY~cs~-~dg~iAiwD~~rnienpl~~i~~ 237 (783)
T KOG1008|consen 162 WL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSP--NYFCSN-SDGDIAIWDTYRNIENPLQIILR 237 (783)
T ss_pred cc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCC--Cceecc-ccCceeeccchhhhccHHHHHhh
Confidence 65 578899999999999999986321111000011123345555433 466654 4999999993 222 33344332
Q ss_pred CCC----CeEEEEEecCCCeEEEEeeCC-CcEEEEEccC
Q 013274 189 HRD----GIMTVEWSTSSEWILVTGGCD-GAIRFWDIRR 222 (446)
Q Consensus 189 h~~----~v~sv~~s~~~~~~l~S~s~D-g~I~iWd~~~ 222 (446)
... .+..++|.|-...++++.+.| ++|+++|++.
T Consensus 238 ~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 238 NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 222 389999999876667777766 7899999863
No 307
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.59 E-value=0.012 Score=56.41 Aligned_cols=109 Identities=17% Similarity=0.247 Sum_probs=69.6
Q ss_pred ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC---------------
Q 013274 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE--------------- 168 (446)
Q Consensus 104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~--------------- 168 (446)
-.+..+.++| .|.+|++.-. .-|.+|+-.....+..+.++ .++.+.++|. ..+|.+=+.
T Consensus 33 ~p~~~~~~SP-~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~---~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 33 WPVAYVSESP-LGTYLFSEHA-AGVECWGGPSKAKLVRFRHP-DVKYLDFSPN---EKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cchhheeecC-cchheehhhc-cceEEccccchhheeeeecC-CceecccCcc---cceeeeeccCCccChhhccCCccc
Confidence 3455667776 6767765544 46999998776656556544 3455555553 345544222
Q ss_pred CCcEEEEeCCCCceeeeeeCCCCC--eE-EEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274 169 DVQVRLCDIASGAISQTLSGHRDG--IM-TVEWSTSSEWILVTGGCDGAIRFWDI 220 (446)
Q Consensus 169 d~~v~vwd~~~~~~~~~l~~h~~~--v~-sv~~s~~~~~~l~S~s~Dg~I~iWd~ 220 (446)
+..+.+||+.+|.++..+.+...+ .+ -+.|+-++++++--. -..+.|+++
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv--~~sl~i~e~ 159 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV--GSSLYIHEI 159 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc--cCeEEEEec
Confidence 336999999999999888776665 55 677887776532111 235888876
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.039 Score=53.56 Aligned_cols=132 Identities=16% Similarity=0.164 Sum_probs=77.4
Q ss_pred eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD 125 (446)
Q Consensus 46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D 125 (446)
-+-++||| -|.||+|-=.-| |.+|=.+.-.. -..-.|.+ |.-+.++| +.++|+|-|.-
T Consensus 213 etyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r------------------~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~ 270 (698)
T KOG2314|consen 213 ETYVRWSP-KGTYLVTFHKQG-IALWGGESFDR------------------IQRFYHPG-VQFIDFSP-NEKYLVTYSPE 270 (698)
T ss_pred eeeEEecC-CceEEEEEeccc-eeeecCccHHH------------------HHhccCCC-ceeeecCC-ccceEEEecCC
Confidence 35688997 578998875544 89995432110 00113442 33445565 77888887652
Q ss_pred -----------CeEEEEECCCCeeeEEEecCCc--e--EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC
Q 013274 126 -----------HYVKVWDTNCTRVVMNFKMPGK--V--YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR 190 (446)
Q Consensus 126 -----------~~i~iWd~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~ 190 (446)
..++|||+.+|...+.|..... . --+.++. +..++|--.. .+|.|++..+-.++..-.=.-
T Consensus 271 p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~---DdKy~Arm~~-~sisIyEtpsf~lld~Kslki 346 (698)
T KOG2314|consen 271 PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH---DDKYFARMTG-NSISIYETPSFMLLDKKSLKI 346 (698)
T ss_pred ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc---CCceeEEecc-ceEEEEecCceeeecccccCC
Confidence 6799999999999888876311 1 1122333 3455554433 568888765533221111123
Q ss_pred CCeEEEEEecCCC
Q 013274 191 DGIMTVEWSTSSE 203 (446)
Q Consensus 191 ~~v~sv~~s~~~~ 203 (446)
..|....|+|.+.
T Consensus 347 ~gIr~FswsP~~~ 359 (698)
T KOG2314|consen 347 SGIRDFSWSPTSN 359 (698)
T ss_pred ccccCcccCCCcc
Confidence 5677778888754
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.017 Score=58.76 Aligned_cols=115 Identities=15% Similarity=0.204 Sum_probs=77.0
Q ss_pred ccCeEEEEEccCCCEEEEeecCCcEEEE--ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcE-EEEeCCCceEEEEeec
Q 013274 309 YGAVTGLKVTEDGMYLLSAGSDSRIRLW--DVESGRNTLVNFETVRLQTSKPIQLATTQDPAV-VFVPCMTAVKAFDIWS 385 (446)
Q Consensus 309 ~~~v~~l~fs~dg~~l~sgs~D~~i~lW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ 385 (446)
..++++++.+.+=+.+|.|-.||.|-++ |+...+-....+. ....++..-+++..++.. +|+++...|.++.+..
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~--~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS--HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG 202 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee--ccCCCCceeeEEecCCceeEEEEecceeEEEEecC
Confidence 3568889999998999999999999988 3332221111111 111233444566655554 7888888999999874
Q ss_pred Cc-eEEEecccccceEEEEEcCCCC-EEEEeeCCCcEEEeCCCC
Q 013274 386 GK-TCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 386 ~~-~~~~l~gH~~~v~~~~fSpd~~-~lvtgs~D~~v~vW~~~~ 427 (446)
+. .+.++..|...++|-+|++-.. .+++++ ..|-++++++
T Consensus 203 r~p~~~~ld~~G~~lnCss~~~~t~qfIca~~--e~l~fY~sd~ 244 (933)
T KOG2114|consen 203 RTPSLKVLDNNGISLNCSSFSDGTYQFICAGS--EFLYFYDSDG 244 (933)
T ss_pred CCcceeeeccCCccceeeecCCCCccEEEecC--ceEEEEcCCC
Confidence 33 2566888899999999997655 555543 4578887763
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.41 E-value=0.092 Score=47.52 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=89.3
Q ss_pred EEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCe
Q 013274 48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY 127 (446)
Q Consensus 48 ~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~ 127 (446)
++.|.+.++.++++--..+.|..||..++... ++. ..+ ...+++...++ .++.+..++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-----------~~~-----~~~----~~G~~~~~~~g-~l~v~~~~~- 61 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-----------VID-----LPG----PNGMAFDRPDG-RLYVADSGG- 61 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----------EEE-----SSS----EEEEEEECTTS-EEEEEETTC-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-----------EEe-----cCC----CceEEEEccCC-EEEEEEcCc-
Confidence 46777657888888888899999998765321 000 011 33445553454 555555544
Q ss_pred EEEEECCCCeeeEEEec--C----CceEEeeeccCCCCceEEEEeeCC--------CcEEEEeCCCCceeeeeeCCCCCe
Q 013274 128 VKVWDTNCTRVVMNFKM--P----GKVYRTAMSPLAASHMLIAAGTED--------VQVRLCDIASGAISQTLSGHRDGI 193 (446)
Q Consensus 128 i~iWd~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~lasgs~d--------~~v~vwd~~~~~~~~~l~~h~~~v 193 (446)
+.++|+.+++....... . ...+.+++.+. +.+.++.... +.|..++.. ++.. .+...-...
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~---G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~~~p 136 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD---GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGLGFP 136 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT---S-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEESSE
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC---CCEEEEecCCCccccccccceEEECCC-CeEE-EEecCcccc
Confidence 55559998866544443 1 12455556553 2344443322 457777776 4433 333334556
Q ss_pred EEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~ 222 (446)
..++|+|+++.++++-+..+.|..+++..
T Consensus 137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred cceEECCcchheeecccccceeEEEeccc
Confidence 89999999987777878888888888753
No 311
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0025 Score=61.40 Aligned_cols=100 Identities=12% Similarity=0.090 Sum_probs=65.3
Q ss_pred eEEEEEccCCCEEEEeec-----------CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEE
Q 013274 312 VTGLKVTEDGMYLLSAGS-----------DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKA 380 (446)
Q Consensus 312 v~~l~fs~dg~~l~sgs~-----------D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (446)
|.-+.|||+.+||+|=|. ...|.|||+.+|.-.. .|...+........+..+.|..+++--..+++.+
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr-sF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisI 330 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR-SFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISI 330 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhc-ceeccCCCccccceEEeccCCceeEEeccceEEE
Confidence 777899999999998664 2568999999986321 2222111112223456677777777766778888
Q ss_pred EEeecCceEEEecccccceEEEEEcCCCCEEE
Q 013274 381 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY 412 (446)
Q Consensus 381 ~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv 412 (446)
++..+-.++..-.-....|-++.|||-++.||
T Consensus 331 yEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 331 YETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EecCceeeecccccCCccccCcccCCCcceEE
Confidence 87655433332233456678899999977765
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.023 Score=52.89 Aligned_cols=74 Identities=15% Similarity=0.371 Sum_probs=63.0
Q ss_pred eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc
Q 013274 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224 (446)
Q Consensus 148 ~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~ 224 (446)
+..++++|+.. -++..++.+..|+|.|+++...+..+..| ..+++.+|..+..+.+..|-..|.|.+||+|...
T Consensus 196 IrdlafSp~~~--GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 196 IRDLAFSPFNE--GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred hhhhccCcccc--ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 56677877643 37888899999999999999888888777 8899999999988888889999999999999754
No 313
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.0062 Score=61.74 Aligned_cols=92 Identities=15% Similarity=0.283 Sum_probs=73.5
Q ss_pred CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCe
Q 013274 125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW 204 (446)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~ 204 (446)
-|+|-|+ +++|.+.+....+-++.+++++| ...+|+.|-.-|.+.+|...+.+.-.....|..++..+.||++|.
T Consensus 40 ~GSVtIf-adtGEPqr~Vt~P~hatSLCWHp---e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~- 114 (1416)
T KOG3617|consen 40 GGSVTIF-ADTGEPQRDVTYPVHATSLCWHP---EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGT- 114 (1416)
T ss_pred CceEEEE-ecCCCCCcccccceehhhhccCh---HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCC-
Confidence 3678887 45666666665555666677776 445789999999999999888776666778999999999999997
Q ss_pred EEEEeeCCCcEEEEEcc
Q 013274 205 ILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 205 ~l~S~s~Dg~I~iWd~~ 221 (446)
+|+|+..=|.+.+|...
T Consensus 115 ~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 115 VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eEEEcCCCceeEEEEee
Confidence 57899999999999865
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.00014 Score=73.32 Aligned_cols=186 Identities=13% Similarity=0.210 Sum_probs=115.8
Q ss_pred EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCC-cEEEEEccCCceeE
Q 013274 149 YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG-AIRFWDIRRAGCFR 227 (446)
Q Consensus 149 ~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg-~I~iWd~~~~~~~~ 227 (446)
.+++|+. +...|+.|+..|.|+++++.+|..-.....|+.+|+-|.-+.++...|.++++.. -..+|++....
T Consensus 1105 Tc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~--- 1178 (1516)
T KOG1832|consen 1105 TCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG--- 1178 (1516)
T ss_pred eeEEeec---CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc---
Confidence 3444544 3457899999999999999999888888999999999998888887665555554 57788875310
Q ss_pred EeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccc
Q 013274 228 VLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATA 307 (446)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (446)
.. .
T Consensus 1179 --~~---------------------------------------------------------------------------~ 1181 (1516)
T KOG1832|consen 1179 --GP---------------------------------------------------------------------------R 1181 (1516)
T ss_pred --Cc---------------------------------------------------------------------------c
Confidence 00 0
Q ss_pred c-ccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecC
Q 013274 308 H-YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG 386 (446)
Q Consensus 308 h-~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 386 (446)
| +..=.++.|+..-+.-+.|.....+.+||+.++.....-+....-..-....+.|+|+..+++-. -.+||+...
T Consensus 1182 Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlnd----GvLWDvR~~ 1257 (1516)
T KOG1832|consen 1182 HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILND----GVLWDVRIP 1257 (1516)
T ss_pred ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeC----ceeeeeccH
Confidence 0 01123455665544434454455689999998753221111111111123456778887776643 357888766
Q ss_pred ceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 387 KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 387 ~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
+.++.|.--+..+. =.|+|.|.-++--| .|||+.+
T Consensus 1258 ~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1258 EAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred HHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHH
Confidence 65555543332222 24899988887655 4777653
No 315
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.33 E-value=0.00061 Score=40.73 Aligned_cols=38 Identities=32% Similarity=0.677 Sum_probs=32.2
Q ss_pred ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (446)
Q Consensus 181 ~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd 219 (446)
.+...+..|...|.++.|.+.++ .+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 44566778999999999999876 578999999999996
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0086 Score=60.46 Aligned_cols=155 Identities=17% Similarity=0.249 Sum_probs=99.5
Q ss_pred eCCCccceeEEEeecC------------CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccE
Q 013274 39 VSPHKGSINSLQVDLT------------EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAI 106 (446)
Q Consensus 39 ~~~H~~~v~~l~~s~~------------~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 106 (446)
+..|.|.|+-..+... +|.+++|||.||+|.|--+.++... ..... +..+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~---~~~df---------------~rpi 115 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEI---TQYDF---------------KRPI 115 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccc---eeEec---------------CCcc
Confidence 4578888887776543 4889999999999999877554321 11111 2234
Q ss_pred eEEEEeec----CCcEEEEEeCCCeEEEEECC---CCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC
Q 013274 107 SSAIWYPV----DTGLFVTGSYDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS 179 (446)
Q Consensus 107 ~~~~~~~~----~~~~l~s~s~D~~i~iWd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~ 179 (446)
.+++++|. ..+++++||.-| +.++.-. ....+......|.++++.+.. .++|=++.+| |++||+.+
T Consensus 116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g-----~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG-----NLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC-----cEEEEecCCC-cEEEeccc
Confidence 45555552 356899999988 7776421 111122223457788877753 4677776554 99999999
Q ss_pred CceeeeeeCCCCCe------EEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274 180 GAISQTLSGHRDGI------MTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 180 ~~~~~~l~~h~~~v------~sv~~s~~~~~~l~S~s~Dg~I~iWd~~ 221 (446)
+..+..++.....+ ..+.|.++.. | .-||-.+|+|..++
T Consensus 189 ~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--L-VIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 189 RQRLTNIPPPSQSVRPELFPPHLHWQDEDR--L-VIGWGDSVKICSIK 233 (846)
T ss_pred cceeeccCCCCCCCCcccCCCceEecCCCe--E-EEecCCeEEEEEEe
Confidence 88777765433333 3566776543 2 34677789999887
No 317
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.30 E-value=0.018 Score=44.11 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=66.9
Q ss_pred EeEEEEeecCC---cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce
Q 013274 106 ISSAIWYPVDT---GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (446)
Q Consensus 106 V~~~~~~~~~~---~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~ 182 (446)
|+++++++.++ ..|+.||.|..||+|+-+ ..+..++..+.+..+.... . ..++.+..+|+|-+|+- ...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~--~--~~F~Y~l~NGTVGvY~~--~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLG--G--GRFAYALANGTVGVYDR--SQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcC--C--CEEEEEecCCEEEEEeC--cce
Confidence 55666665444 479999999999999864 5566666666665544332 2 46899999999999974 445
Q ss_pred eeeeeCCCCCeEEEEEe-cC--CCeEEEEeeCCCcEE
Q 013274 183 SQTLSGHRDGIMTVEWS-TS--SEWILVTGGCDGAIR 216 (446)
Q Consensus 183 ~~~l~~h~~~v~sv~~s-~~--~~~~l~S~s~Dg~I~ 216 (446)
++.++.... +.++.+. .+ +..-|++|-.+|.|-
T Consensus 74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 566664444 4555433 22 223467887778763
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.25 E-value=0.13 Score=47.20 Aligned_cols=138 Identities=19% Similarity=0.221 Sum_probs=82.4
Q ss_pred EEEeecCCCCEEEEeeCCCc-EEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC--
Q 013274 48 SLQVDLTEERYLLSGASDSS-VAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY-- 124 (446)
Q Consensus 48 ~l~~s~~~~~~l~s~s~Dg~-i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~-- 124 (446)
.++.+|.....++.+-.-|+ ..+||+.++.... .+..-...++.||- +|+ .|+++|++.=.
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~---------~~~a~~gRHFyGHg------~fs-~dG~~LytTEnd~ 72 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ---------RLWAPPGRHFYGHG------VFS-PDGRLLYTTENDY 72 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee---------EEcCCCCCEEecCE------EEc-CCCCEEEEecccc
Confidence 45666666677777777776 6788988765321 11112345677885 444 48888887633
Q ss_pred ---CCeEEEEECC-CCeeeEEEecCCc-eEEeeeccCCCCceE-EEEe----------------eCCCcEEEEeCCCCce
Q 013274 125 ---DHYVKVWDTN-CTRVVMNFKMPGK-VYRTAMSPLAASHML-IAAG----------------TEDVQVRLCDIASGAI 182 (446)
Q Consensus 125 ---D~~i~iWd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-lasg----------------s~d~~v~vwd~~~~~~ 182 (446)
.|.|-|||.. +.+.+..+...|- .+.+.+.++.. .+ +|-| +.+.++-+.|..+|++
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~--tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l 150 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE--TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL 150 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCC--EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce
Confidence 4789999998 4445555543321 23344444331 12 1111 2234566677788876
Q ss_pred eee--e--eCCCCCeEEEEEecCCC
Q 013274 183 SQT--L--SGHRDGIMTVEWSTSSE 203 (446)
Q Consensus 183 ~~~--l--~~h~~~v~sv~~s~~~~ 203 (446)
+.. + .-|+-.+..+++.+++.
T Consensus 151 l~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 151 LEQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred eeeeecCccccccceeeEEecCCCc
Confidence 654 5 33777788888887764
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.24 E-value=0.0014 Score=63.84 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=52.8
Q ss_pred ccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecC
Q 013274 307 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG 386 (446)
Q Consensus 307 ~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 386 (446)
...+.|.+++++|+...|+.|..||+|.+||...+......
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k--------------------------------------- 297 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK--------------------------------------- 297 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee---------------------------------------
Confidence 34567999999999999999999999999998764221110
Q ss_pred ceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 387 KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 387 ~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
+.=.++.++|+|+|..++.|+.-|.+.+||..
T Consensus 298 --------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 298 --------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred --------ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 00124667777777777777777777777665
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.23 E-value=0.015 Score=58.35 Aligned_cols=54 Identities=17% Similarity=0.272 Sum_probs=42.9
Q ss_pred CCcEEEEeCCC----C-ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274 169 DVQVRLCDIAS----G-AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (446)
Q Consensus 169 d~~v~vwd~~~----~-~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~ 223 (446)
++.|.+.|..+ + .....+.- ......+.++|+++++++++..++++-+.|+.+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 56799999988 3 45555542 3456889999999998889989999999998764
No 321
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.029 Score=56.57 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=97.7
Q ss_pred eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC---------
Q 013274 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT--------- 116 (446)
Q Consensus 46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~--------- 116 (446)
-+++.|++ .| +||-| .-..|.+-|..+-+.. +...-|+..|+.+.|.|...
T Consensus 18 ~~A~Dw~~-~G-LiAyg-shslV~VVDs~s~q~i-----------------qsie~h~s~V~~VrWap~~~p~~llS~~~ 77 (1062)
T KOG1912|consen 18 RNAADWSP-SG-LIAYG-SHSLVSVVDSRSLQLI-----------------QSIELHQSAVTSVRWAPAPSPRDLLSPSS 77 (1062)
T ss_pred ccccccCc-cc-eEEEe-cCceEEEEehhhhhhh-----------------hccccCccceeEEEeccCCCchhccCccc
Confidence 56788875 33 55555 4566888886543221 12235777888888866321
Q ss_pred --cEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCc-eEEEEeeCCCcEEEEeCCCCceeeeeeCCCCC
Q 013274 117 --GLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASH-MLIAAGTEDVQVRLCDIASGAISQTLSGHRDG 192 (446)
Q Consensus 117 --~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~ 192 (446)
-++|++...|.|.+||...+..+..++.+ ..+..+.+.+.-.+. .++++-.....+-+|+..+|...+...-....
T Consensus 78 ~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i 157 (1062)
T KOG1912|consen 78 SQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI 157 (1062)
T ss_pred cceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc
Confidence 25788888899999999887776666543 334555555433222 45555555679999999999988776655566
Q ss_pred eEEEEEecCCC-eEEEEeeCCCcEEEEE
Q 013274 193 IMTVEWSTSSE-WILVTGGCDGAIRFWD 219 (446)
Q Consensus 193 v~sv~~s~~~~-~~l~S~s~Dg~I~iWd 219 (446)
..+..+.|-+. ++.+.++ .|.+.+-+
T Consensus 158 Ls~f~~DPfd~rh~~~l~s-~g~vl~~~ 184 (1062)
T KOG1912|consen 158 LSCFRVDPFDSRHFCVLGS-KGFVLSCK 184 (1062)
T ss_pred eeeeeeCCCCcceEEEEcc-CceEEEEe
Confidence 77788888554 3334444 45555554
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.17 E-value=0.27 Score=47.99 Aligned_cols=110 Identities=10% Similarity=0.052 Sum_probs=69.9
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceE--------EeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY--------RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~ 187 (446)
++.++.++.++.+..+|.++++.+-......... .+...+.. ....+..++.++.++.+|.++|+.+++..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-ECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 4577778888999999999999887766543110 00011111 12345567788999999999999887765
Q ss_pred CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEe
Q 013274 188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL 229 (446)
Q Consensus 188 ~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~ 229 (446)
.......+..+. ++ . ++.++.++.+.-+|..+++.+=.+
T Consensus 148 ~~~~~~ssP~v~-~~-~-v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 148 VAGEALSRPVVS-DG-L-VLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred CCCceecCCEEE-CC-E-EEEECCCCEEEEEEccCCCEeeee
Confidence 432222222222 33 3 445677899999999888754333
No 323
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.0028 Score=62.93 Aligned_cols=64 Identities=27% Similarity=0.524 Sum_probs=51.1
Q ss_pred CceEEEEeeCCCcEEEEeCCCCc---------------eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274 159 SHMLIAAGTEDVQVRLCDIASGA---------------ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (446)
Q Consensus 159 ~~~~lasgs~d~~v~vwd~~~~~---------------~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~ 223 (446)
...++|.|+.||.+++..+.+.. .-+++.||++.|+-+.|+.+.+. |-|+..+|.|.+|=+-++
T Consensus 25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykg 103 (1189)
T KOG2041|consen 25 ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKG 103 (1189)
T ss_pred cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecc
Confidence 34589999999999999875431 12578999999999999987774 678888999999976543
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.07 E-value=0.0041 Score=60.80 Aligned_cols=77 Identities=25% Similarity=0.379 Sum_probs=56.8
Q ss_pred EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (446)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd 219 (446)
..++++..+.+.+.++ +...++.|+.||+|.+||...+.-. +....-..+.++|+|++. +++.|+.-|.+.+||
T Consensus 254 tsipL~s~v~~ca~sp---~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 254 TSIPLPSQVICCARSP---SEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFD 327 (545)
T ss_pred EEEecCCcceEEecCc---ccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCc-EEEEEcCCceEEEEE
Confidence 3445566666666665 4568999999999999999876322 222334568899999987 578899999999999
Q ss_pred ccC
Q 013274 220 IRR 222 (446)
Q Consensus 220 ~~~ 222 (446)
+--
T Consensus 328 ~AL 330 (545)
T PF11768_consen 328 MAL 330 (545)
T ss_pred eec
Confidence 753
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.94 E-value=0.43 Score=46.29 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=75.7
Q ss_pred ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCC-C--CCccc----------cccceEEecc-------------cc
Q 013274 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE-G--GGHIA----------KHRSVFVVDK-------------QH 98 (446)
Q Consensus 45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~-~--~~~~~----------~~~~~~~~~~-------------~~ 98 (446)
.|..+.|++..+ =|+.|-..|.|.||.......+. . ..... ....+.-+.. ..
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588899986444 58888899999999875443321 0 00000 0000100100 01
Q ss_pred ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCC---------ceEEeeec-----cCCCCceEEE
Q 013274 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---------KVYRTAMS-----PLAASHMLIA 164 (446)
Q Consensus 99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~---------~~~~~~~~-----~~~~~~~~la 164 (446)
.+..++.|+++..+ |-..+|.|..||++.|-|+.....+..-.... .+.++.|. .+.....++.
T Consensus 82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 12347889888775 45699999999999999999888887654433 12233333 2223446788
Q ss_pred EeeCCCcEEEEeCC
Q 013274 165 AGTEDVQVRLCDIA 178 (446)
Q Consensus 165 sgs~d~~v~vwd~~ 178 (446)
+|...|.+.+|.+.
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 99999999999874
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.19 Score=51.53 Aligned_cols=213 Identities=15% Similarity=0.192 Sum_probs=115.1
Q ss_pred cCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC-----cEEEEeCCCC---c---e
Q 013274 114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-----QVRLCDIASG---A---I 182 (446)
Q Consensus 114 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~-----~v~vwd~~~~---~---~ 182 (446)
+.+..++-|+.||.|.+.+-. .+.++.++...+- -+.+--....+.+|++-..|+ .+++||++.- . +
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred CCCceEEEeeccccEEEeccc-ceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 367799999999988777532 1222333321111 022222222334555544443 5899999642 2 2
Q ss_pred e--eeeeC-----CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274 183 S--QTLSG-----HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA 255 (446)
Q Consensus 183 ~--~~l~~-----h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (446)
. ..+.+ ...++.+++.+.+-+ .+|.|=.+|.|..+.=. ..+- .|
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GD---i~RD-------rg------------------ 161 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGD---ILRD-------RG------------------ 161 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCc---chhc-------cc------------------
Confidence 2 12222 255678888887765 46777788888877311 0000 00
Q ss_pred CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEE
Q 013274 256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 335 (446)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~l 335 (446)
. .... ...-..+|++++|..+++.++=...-..|.+
T Consensus 162 ---------------------------------s-r~~~----------~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~ 197 (933)
T KOG2114|consen 162 ---------------------------------S-RQDY----------SHRGKEPITGLALRSDGKSVLFVATTEQVML 197 (933)
T ss_pred ---------------------------------c-ceee----------eccCCCCceeeEEecCCceeEEEEecceeEE
Confidence 0 0000 0011357999999999986222223457999
Q ss_pred EecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEec-ccccceEEEEE
Q 013274 336 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR-GHYEYVNCCCF 404 (446)
Q Consensus 336 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~-gH~~~v~~~~f 404 (446)
|.+....+.. ..+..+........+++....+.++....+..++....++.-+|. ||+..+.++.|
T Consensus 198 y~l~gr~p~~---~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~ 264 (933)
T KOG2114|consen 198 YSLSGRTPSL---KVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSF 264 (933)
T ss_pred EEecCCCcce---eeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEec
Confidence 9988432111 112211222222333333333666667788888887777777887 88877766653
No 327
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.90 E-value=0.11 Score=54.31 Aligned_cols=103 Identities=14% Similarity=0.220 Sum_probs=66.4
Q ss_pred CCcEE-EEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCC----CceEEEEeeCCCcEEEEeCCCC--ceee-ee
Q 013274 115 DTGLF-VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAA----SHMLIAAGTEDVQVRLCDIASG--AISQ-TL 186 (446)
Q Consensus 115 ~~~~l-~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lasgs~d~~v~vwd~~~~--~~~~-~l 186 (446)
+..+| ........|.--|++.|+++..+.....+.-..+.|..- .......|-.+..+..||.+-. +++. ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 44443 344456889999999999998888765432233444211 1223456667889999998753 2221 11
Q ss_pred e--CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274 187 S--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (446)
Q Consensus 187 ~--~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd 219 (446)
. .......|++-+.+| + +|.||.+|.||+||
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~-iavgs~~G~IRLyd 604 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-Y-IAVGSNKGDIRLYD 604 (794)
T ss_pred cccccCCCceEEEecCCc-e-EEEEeCCCcEEeec
Confidence 1 234456788877666 3 68999999999998
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.85 E-value=0.31 Score=43.20 Aligned_cols=109 Identities=14% Similarity=0.130 Sum_probs=79.7
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s 195 (446)
..+++-||..+.+.--|..+|.....-.+.+.+.+.++.. ++.++.|+..+.+++.+.++|...+.+..-..--..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv----gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV----GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE----CCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 4577888889999999998888776655666665555442 235889999999999999999777665432221122
Q ss_pred EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEe
Q 013274 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL 229 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~ 229 (446)
....+++. ++..|+.|+....-|.++.+|+...
T Consensus 99 a~~d~~~g-lIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 99 AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred eEEcCCCc-eEEEecCCCcEEEecccccceEEec
Confidence 33456666 5689999999999999998887653
No 329
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.75 E-value=1.2 Score=48.43 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=48.1
Q ss_pred cccEeEEEEeecCCcEEEEEeCCCeEEEE----ECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEE
Q 013274 103 KYAISSAIWYPVDTGLFVTGSYDHYVKVW----DTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175 (446)
Q Consensus 103 ~~~V~~~~~~~~~~~~l~s~s~D~~i~iW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vw 175 (446)
...|.++.+.+ +...++.+..+|.|.+. +..+......-...+.+.+++++|+. .+|+..+.++++.+.
T Consensus 75 ~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~---Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 75 NDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDE---ELLALVTGEGNLLLM 147 (928)
T ss_pred CCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCc---CEEEEEeCCCEEEEE
Confidence 35677777776 56677778888999999 66655554444456678889999854 467766667766654
No 330
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.61 E-value=0.0058 Score=52.75 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=65.6
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC-CCe
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DGI 193 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~-~~v 193 (446)
-+..++.|+.|+.|.+|.....-........+.-.-....|...+..+..+++.|+.|+.|++.-++.+...-.|+ .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 3457889999999999987621111101011110011223333444578889999999999999988887777777 444
Q ss_pred EEEEEecCCCeEEEEe--eCCCcEEEEEccC
Q 013274 194 MTVEWSTSSEWILVTG--GCDGAIRFWDIRR 222 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~--s~Dg~I~iWd~~~ 222 (446)
.....+..++. ++.+ |.|..++.|++..
T Consensus 149 e~~ivv~sd~~-i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEF-LKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCce-EEeeccccchhhhhcchhh
Confidence 44444444443 4555 6677777777654
No 331
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.61 E-value=0.13 Score=39.55 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=61.6
Q ss_pred eeEEEeec---CCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274 46 INSLQVDL---TEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (446)
Q Consensus 46 v~~l~~s~---~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~ 122 (446)
|++|++.. ++.+-|+.||.|..||+|+-+.-. ..+ .-...|+++... ...+|+-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~--------------~Ei------~e~~~v~~L~~~--~~~~F~Y~ 59 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV--------------AEI------TETDKVTSLCSL--GGGRFAYA 59 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE--------------EEE------ecccceEEEEEc--CCCEEEEE
Confidence 67787642 223679999999999999854211 000 122345555544 34689999
Q ss_pred eCCCeEEEEECCCCeeeEEEecCCceEEeeeccCC-CCceEEEEeeCCCcEEE
Q 013274 123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLA-ASHMLIAAGTEDVQVRL 174 (446)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lasgs~d~~v~v 174 (446)
-.+|+|-+|+-.. .+........+.++.+.... .+..-|++|..+|.|.+
T Consensus 60 l~NGTVGvY~~~~--RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 60 LANGTVGVYDRSQ--RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ecCCEEEEEeCcc--eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 9999998886532 22222222334444443332 22345788888887753
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.58 E-value=0.98 Score=45.48 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=48.1
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEecCCce---EEeeeccCCCCceEEEEee---------CCCcEEEEeCCCCceee
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV---YRTAMSPLAASHMLIAAGT---------EDVQVRLCDIASGAISQ 184 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lasgs---------~d~~v~vwd~~~~~~~~ 184 (446)
+.++.++.|+.|..+|.++++.+-.+...... +.+..+|.-.+. +++.++ .++.+..+|.++|+.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKK-LVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECC-EEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 57888889999999999999998877765431 112222222222 344443 36789999999999887
Q ss_pred eeeC
Q 013274 185 TLSG 188 (446)
Q Consensus 185 ~l~~ 188 (446)
.+..
T Consensus 190 ~~~~ 193 (488)
T cd00216 190 RFYT 193 (488)
T ss_pred Eeec
Confidence 7653
No 333
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.38 E-value=0.48 Score=46.39 Aligned_cols=49 Identities=18% Similarity=0.433 Sum_probs=35.5
Q ss_pred cEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274 171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (446)
Q Consensus 171 ~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~ 222 (446)
.|++|+... +++.++.=..+.+.++.|+.+.+ |+.-..||+++++|+..
T Consensus 62 ~I~iys~sG-~ll~~i~w~~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSSG-KLLSSIPWDSGRIVGMGWTDDEE--LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCCC-CEeEEEEECCCCEEEEEECCCCe--EEEEEcCCEEEEEeCCC
Confidence 489998754 45555443338999999987654 45667899999999863
No 334
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.14 Score=49.80 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=69.7
Q ss_pred EEeecCCc-EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCce----EEEEeeCCCcEEEEeCCCCc--e
Q 013274 110 IWYPVDTG-LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM----LIAAGTEDVQVRLCDIASGA--I 182 (446)
Q Consensus 110 ~~~~~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~lasgs~d~~v~vwd~~~~~--~ 182 (446)
..+..+.. +|.++..-..+.=-|++.|+.+..+.....+.-+.+.++..... .-+.|-.|..|.-||.+-.. .
T Consensus 339 mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 339 MLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred hhhccccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 33333443 45677777888888999999998888776666666666543222 23456678899999987432 2
Q ss_pred eeeeeCC----CCCeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274 183 SQTLSGH----RDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (446)
Q Consensus 183 ~~~l~~h----~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~ 220 (446)
+..-++| ...-.|.+-..+| + +|.||.+|.||+||-
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~sG-~-IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTESG-Y-IVVGSLKGDIRLYDR 458 (644)
T ss_pred eeeeeccccccccccceeeecCCc-e-EEEeecCCcEEeehh
Confidence 2222233 1234455544444 4 689999999999983
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.046 Score=51.05 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=68.5
Q ss_pred ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (446)
Q Consensus 99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~ 178 (446)
..+|...|..+.++|.+..++..++.+.+|+|.|+++..++..+.....+.+.+|.-+. ...|..|-.+|.|.+||++
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde--~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDE--RHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCC--cceeEEeccCceEEEEEcc
Confidence 45788889999999988889999999999999999998888888777777777776543 4678899999999999998
Q ss_pred CCc
Q 013274 179 SGA 181 (446)
Q Consensus 179 ~~~ 181 (446)
..+
T Consensus 267 ~~~ 269 (463)
T KOG1645|consen 267 QPE 269 (463)
T ss_pred CCC
Confidence 664
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.15 E-value=1.2 Score=41.74 Aligned_cols=239 Identities=16% Similarity=0.159 Sum_probs=117.8
Q ss_pred CCCeEEEEECCCCeeeEEEecCCc-eEE-------eeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274 124 YDHYVKVWDTNCTRVVMNFKMPGK-VYR-------TAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (446)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s 195 (446)
..--|.+||..+-++...+.++.. ... .+++.+. ...++.=.+.-.+|-|.|++.++.+..+.-. .+..
T Consensus 65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~ 141 (342)
T PF06433_consen 65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWL 141 (342)
T ss_dssp EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEE
T ss_pred ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEE
Confidence 345799999999888887777754 221 1122111 1112222334446778888888877766532 2233
Q ss_pred EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG 275 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (446)
+--+++ . -|.+-|.||++.-..+...+....-......... .+++. .
T Consensus 142 iyP~~~-~-~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~-dp~f~------------------------~------ 188 (342)
T PF06433_consen 142 IYPSGN-R-GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDD-DPLFE------------------------H------ 188 (342)
T ss_dssp EEEEET-T-EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTT-S-B-S-------------------------------
T ss_pred EEecCC-C-ceEEEecCCceEEEEECCCCCEeEeeccccCCCC-ccccc------------------------c------
Confidence 322322 2 3678899999999988743321110000000000 00000 0
Q ss_pred eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274 276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 355 (446)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~ 355 (446)
......+. .+ -+..-.|.|..++++.+.-.+ ..=|.+.+.... .....+
T Consensus 189 ------~~~~~~~~---~~---------~F~Sy~G~v~~~dlsg~~~~~--------~~~~~~~t~~e~-----~~~WrP 237 (342)
T PF06433_consen 189 ------PAYSRDGG---RL---------YFVSYEGNVYSADLSGDSAKF--------GKPWSLLTDAEK-----ADGWRP 237 (342)
T ss_dssp -------EEETTTT---EE---------EEEBTTSEEEEEEETTSSEEE--------EEEEESS-HHHH-----HTTEEE
T ss_pred ------cceECCCC---eE---------EEEecCCEEEEEeccCCcccc--------cCcccccCcccc-----ccCcCC
Confidence 00000000 00 001113446666666554222 234544331100 012233
Q ss_pred CCCeEEEEcCCCcEEEEeCC-----------CceEEEEeecCceEEEecccccceEEEEEcCCCC-EEEEee-CCCcEEE
Q 013274 356 SKPIQLATTQDPAVVFVPCM-----------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGG-NDRQILV 422 (446)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~-~lvtgs-~D~~v~v 422 (446)
+.-..+++.+....+++-.. ..+-++|+.+++.+..+..- .++.+++.|.|.+ +|++.+ .++.+.|
T Consensus 238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEE
Confidence 44455666665555444211 13555677788887777642 3578999999876 666654 5789999
Q ss_pred eCCCCCCC
Q 013274 423 WCPSRHIS 430 (446)
Q Consensus 423 W~~~~~~~ 430 (446)
||+.++++
T Consensus 317 ~D~~tGk~ 324 (342)
T PF06433_consen 317 YDAATGKL 324 (342)
T ss_dssp EETTT--E
T ss_pred EeCcCCcE
Confidence 99987754
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.10 E-value=0.68 Score=49.64 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=64.8
Q ss_pred eEEEEEccCCCEEEE-----eecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC----CCceEEEE
Q 013274 312 VTGLKVTEDGMYLLS-----AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC----MTAVKAFD 382 (446)
Q Consensus 312 v~~l~fs~dg~~l~s-----gs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d 382 (446)
-+.|.|--||.|+++ ...-+.|++||-+ +.-.... + ........++..|.+..+++.- .+.+.++.
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s-e---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS-E---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc-C---cccccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence 356889999999887 3333899999966 2110000 0 0011222355556666555531 12334443
Q ss_pred eecCceEE----EecccccceEEEEEcCCCCEEEE---eeCCCcEEEeCCCC
Q 013274 383 IWSGKTCL----TFRGHYEYVNCCCFSSQDQELYT---GGNDRQILVWCPSR 427 (446)
Q Consensus 383 ~~~~~~~~----~l~gH~~~v~~~~fSpd~~~lvt---gs~D~~v~vW~~~~ 427 (446)
.+|-... -++....++..++|+.++..|+. +.....|++|....
T Consensus 273 -rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 273 -RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred -cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 2332222 24445566999999999999997 66666699997763
No 338
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.10 E-value=1.1 Score=41.21 Aligned_cols=96 Identities=15% Similarity=0.070 Sum_probs=61.5
Q ss_pred EEEeecCCcEEEEEeCCCe-EEEEECCCCeeeEEEecCCceE---EeeeccCCCCceEEEEe-----eCCCcEEEEeCC-
Q 013274 109 AIWYPVDTGLFVTGSYDHY-VKVWDTNCTRVVMNFKMPGKVY---RTAMSPLAASHMLIAAG-----TEDVQVRLCDIA- 178 (446)
Q Consensus 109 ~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lasg-----s~d~~v~vwd~~- 178 (446)
++.+|.....++.+-.-|+ +.+||..+++....+..+...+ -..|+++ ..+|.+. ...|.|-|||..
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~d---G~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPD---GRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCC---CCEEEEeccccCCCcEEEEEEECcC
Confidence 3455555666677766654 6788999888776665432211 1245553 3344443 346789999999
Q ss_pred CCceeeeeeCCCCCeEEEEEecCCCeEEE
Q 013274 179 SGAISQTLSGHRDGIMTVEWSTSSEWILV 207 (446)
Q Consensus 179 ~~~~~~~l~~h~~~v~sv~~s~~~~~~l~ 207 (446)
+-..+..+..|.-.--.+.+.|+++.++|
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvV 115 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVV 115 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEE
Confidence 44677788877666667788899976444
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.01 E-value=0.0019 Score=63.34 Aligned_cols=158 Identities=18% Similarity=0.282 Sum_probs=98.4
Q ss_pred ccceeEEEeecCCC-CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274 43 KGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (446)
Q Consensus 43 ~~~v~~l~~s~~~~-~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s 121 (446)
+..+.|++...... .+++.|..+|.|-+=.+...-. + ......+|....++++|.+.|...||.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-----------S----s~E~tp~~ar~Ct~lAwneLDtn~LAa 120 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-----------S----SAEVTPGYARPCTSLAWNELDTNHLAA 120 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-----------c----cceecccccccccccccccccHHHHHh
Confidence 35567777543322 5888999999999887653211 1 011224677778889999988888887
Q ss_pred Ee----CCCeEEEEECCCC--eeeEEEecCC-ceEEe-eeccCCCCceEEEEeeCCCcEEEEeCCCCc-eeeeeeCCCCC
Q 013274 122 GS----YDHYVKVWDTNCT--RVVMNFKMPG-KVYRT-AMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDG 192 (446)
Q Consensus 122 ~s----~D~~i~iWd~~~~--~~~~~~~~~~-~~~~~-~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-~~~~l~~h~~~ 192 (446)
|= .|..+.|||+.++ .+.....+.+ ..... ..++. .++.++.+|.....++++|++... ....+ .+..
T Consensus 121 gldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~ 197 (783)
T KOG1008|consen 121 GLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKY 197 (783)
T ss_pred hhhhhcccCCccceecccccCCCccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhh--hhhh
Confidence 63 2678999999876 2222222221 11111 22222 567789999999999999997432 11222 2345
Q ss_pred eEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274 193 IMTVEWSTSSEWILVTGGCDGAIRFWD 219 (446)
Q Consensus 193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd 219 (446)
+..+.++|-....+++- .||.|.+||
T Consensus 198 vqG~tVdp~~~nY~cs~-~dg~iAiwD 223 (783)
T KOG1008|consen 198 VQGITVDPFSPNYFCSN-SDGDIAIWD 223 (783)
T ss_pred cccceecCCCCCceecc-ccCceeecc
Confidence 66677777333345554 499999999
No 340
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.98 E-value=0.028 Score=56.08 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=70.4
Q ss_pred EEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCce-EEEEeecCc---eEEE
Q 013274 316 KVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAV-KAFDIWSGK---TCLT 391 (446)
Q Consensus 316 ~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~---~~~~ 391 (446)
+++..++|++-|+.-|.+.+|+-..+.......+. ..+.......+++..+++.++.+.. -++-+..+. .+..
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~---~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG---ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccC---ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 46677899999999999999986665432211111 1122233445555566666655543 333333321 1111
Q ss_pred e---cccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 392 F---RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 392 l---~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
- ..|...|+|++||+|+..|++|..-|+|-.-.++.
T Consensus 117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 23788999999999999999999999998887776
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.82 E-value=0.18 Score=52.63 Aligned_cols=99 Identities=20% Similarity=0.242 Sum_probs=65.0
Q ss_pred cEEEEEeCCCeEEEEECCCC--eeeEEE--ecCC--ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC
Q 013274 117 GLFVTGSYDHYVKVWDTNCT--RVVMNF--KMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR 190 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~--~~~~~~--~~~~--~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~ 190 (446)
...+.|=.+..+..||..-. +++..- +... ...+++-+. .-.||.|+.+|.||+||--..+....|++-.
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~----~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG 618 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE----DGYIAVGSNKGDIRLYDRLGKRAKTALPGLG 618 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC----CceEEEEeCCCcEEeecccchhhhhcCCCCC
Confidence 34556777889999997642 222110 1111 112222222 2368999999999999953333345677888
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~ 221 (446)
.+|..|..+.+|+|+|+|| +..+.|.++.
T Consensus 619 ~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 619 DPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred CCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 9999999999999987765 4678888863
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.80 E-value=1.8 Score=40.93 Aligned_cols=94 Identities=12% Similarity=0.188 Sum_probs=54.4
Q ss_pred eEEEEECCCCeeeEEEecCC--ceEEeeeccCCC----CceEEEEeeC---------C-CcEEEEeCCCC----ceeeee
Q 013274 127 YVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAA----SHMLIAAGTE---------D-VQVRLCDIASG----AISQTL 186 (446)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~lasgs~---------d-~~v~vwd~~~~----~~~~~l 186 (446)
.|++.|..+.+.+..+.+.. .+.++....+.. ...+++.|+. . |.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57777777766666655433 234333333222 1456666542 2 78999999884 222222
Q ss_pred --eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc
Q 013274 187 --SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224 (446)
Q Consensus 187 --~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~ 224 (446)
....++|.++.-- ++ .++++. .+.|.+|++...+
T Consensus 83 ~~~~~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETTS
T ss_pred EEEeecCcceEhhhh-CC-EEEEee--cCEEEEEEccCcc
Confidence 2457889999865 33 444333 4789999987643
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.70 E-value=0.053 Score=54.25 Aligned_cols=120 Identities=20% Similarity=0.301 Sum_probs=81.4
Q ss_pred EeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee-eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEE
Q 013274 150 RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228 (446)
Q Consensus 150 ~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~-~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~ 228 (446)
.+.+.+++....+++.|++.|.+++|+-.++... ....+-.+.+.....+++. +++|.|+..|.|-++-+.....
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p--- 110 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELP--- 110 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCC---
Confidence 3445555556678999999999999998877543 3333444455566677665 4577888888888886653110
Q ss_pred eecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCccccccccccc
Q 013274 229 LDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH 308 (446)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 308 (446)
+.. . .+.+. ...|
T Consensus 111 ------------~~~---------------------------------------~---------~~t~~-------d~~~ 123 (726)
T KOG3621|consen 111 ------------RDL---------------------------------------D---------YVTPC-------DKSH 123 (726)
T ss_pred ------------Ccc---------------------------------------e---------eeccc-------cccC
Confidence 000 0 00000 0226
Q ss_pred ccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274 309 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 309 ~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~ 340 (446)
...|+++.|++|++.+.+|..-|+|.+-.+.+
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 77899999999999999999999999888776
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.60 E-value=0.61 Score=45.98 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=52.3
Q ss_pred eEEEEEccCCCEEEEeecCCcEEEE-ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEE
Q 013274 312 VTGLKVTEDGMYLLSAGSDSRIRLW-DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCL 390 (446)
Q Consensus 312 v~~l~fs~dg~~l~sgs~D~~i~lW-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 390 (446)
-...+|.+.+.| |+-...++|+++ +++..... .........-.+. +.++.+.+.+.+.+||..+++.++
T Consensus 71 g~~~vw~~~n~y-Av~~~~~~I~I~kn~~~~~~k-------~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~ 140 (443)
T PF04053_consen 71 GLSFVWSSRNRY-AVLESSSTIKIYKNFKNEVVK-------SIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIR 140 (443)
T ss_dssp -SEEEE-TSSEE-EEE-TTS-EEEEETTEE-TT------------SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEE
T ss_pred eeEEEEecCccE-EEEECCCeEEEEEcCccccce-------EEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceee
Confidence 344678886654 445557889996 44322100 0111111111122 566666666678999999998888
Q ss_pred EecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274 391 TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 391 ~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
.+... .|..|.||+++.+++-.+.| ++.|.+-
T Consensus 141 ~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 141 RIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp EESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred EEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 88744 38899999999999877754 5566543
No 345
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.39 E-value=2.4 Score=39.66 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=64.8
Q ss_pred eEEEEEccCCCEE-EEeecCCcEEEEecCc--Ccee-eeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--CceEEEEeec
Q 013274 312 VTGLKVTEDGMYL-LSAGSDSRIRLWDVES--GRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWS 385 (446)
Q Consensus 312 v~~l~fs~dg~~l-~sgs~D~~i~lWd~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~ 385 (446)
-+.|+|||||+.| ++=+..++|.-|++.. +... ...+.......+.+--++...++.+..++.. ..+..|+-.
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence 4779999999755 4446668888887752 1100 0111111222344555666667777654433 378888877
Q ss_pred CceEEEecccccceEEEEEc-CCCCEEEEeeC
Q 013274 386 GKTCLTFRGHYEYVNCCCFS-SQDQELYTGGN 416 (446)
Q Consensus 386 ~~~~~~l~gH~~~v~~~~fS-pd~~~lvtgs~ 416 (446)
+++...+.-....+++++|- |+.+.|...+.
T Consensus 244 G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 244 GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 88888888887888999996 55555554333
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.38 E-value=0.34 Score=47.75 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=71.9
Q ss_pred ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (446)
Q Consensus 45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~ 124 (446)
...+|+++| .+++++. ..||.-.|+...... . ...+.-...+|.+ ...+|+-..
T Consensus 34 ~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r------------~----------k~~G~g~~~vw~~--~n~yAv~~~ 87 (443)
T PF04053_consen 34 YPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWR------------N----------KAFGSGLSFVWSS--RNRYAVLES 87 (443)
T ss_dssp --SEEEE-T-TSSEEEE-EETTEEEEEETTTTE------------E----------EEEEE-SEEEE-T--SSEEEEE-T
T ss_pred CCeeEEECC-CCCEEEE-EcCCEEEEEEccCCc------------c----------cccCceeEEEEec--CccEEEEEC
Confidence 357899997 5777766 677888888632111 0 0112222456765 346787777
Q ss_pred CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCe
Q 013274 125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW 204 (446)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~ 204 (446)
..+|+|+.--.......++.+..+..+-. +.+|+..+ ++.|.+||.++++.+.++.-. +|..|.|+++++.
T Consensus 88 ~~~I~I~kn~~~~~~k~i~~~~~~~~If~------G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 88 SSTIKIYKNFKNEVVKSIKLPFSVEKIFG------GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL 158 (443)
T ss_dssp TS-EEEEETTEE-TT-----SS-EEEEE-------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSE
T ss_pred CCeEEEEEcCccccceEEcCCcccceEEc------CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCE
Confidence 89999974322233233444433332222 23444444 348999999999999888633 4899999999886
Q ss_pred EEEEeeCCCcEEEEEcc
Q 013274 205 ILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 205 ~l~S~s~Dg~I~iWd~~ 221 (446)
+.+ .+ +.++.|++..
T Consensus 159 val-~t-~~~i~il~~~ 173 (443)
T PF04053_consen 159 VAL-VT-KDSIYILKYN 173 (443)
T ss_dssp EEE-E--S-SEEEEEE-
T ss_pred EEE-Ee-CCeEEEEEec
Confidence 433 33 4567777643
No 347
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.36 E-value=1.2 Score=45.31 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=71.2
Q ss_pred EccCCCEEEEeecCCcEEEEecCc----CceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--CceEEEEeecCce--
Q 013274 317 VTEDGMYLLSAGSDSRIRLWDVES----GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKT-- 388 (446)
Q Consensus 317 fs~dg~~l~sgs~D~~i~lWd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~-- 388 (446)
+.++|++... .+++|.+.|..+ +.... ........+--+.++||+..++++.. ..+-++|+.+.+.
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~----~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALT----RYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCCcceE----EEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 3467877655 367899999887 22111 11112345666889999999888754 5789999876442
Q ss_pred ----------EEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 389 ----------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 389 ----------~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
..+..--. .....+|.++|....|--.|..|-.|+++.
T Consensus 358 ~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 23333222 235668999999999999999999999986
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.21 E-value=4.1 Score=41.38 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=45.8
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEecCCc--eEEeeeccCCCCceEEEEee-----CCCcEEEEeCCCCceeeeee
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGT-----EDVQVRLCDIASGAISQTLS 187 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lasgs-----~d~~v~vwd~~~~~~~~~l~ 187 (446)
+.++.++.|+.+...|.++++.+-.+..... .+.+..+|.-.+..+++..+ .++.|..+|.++|+.+..+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 4677788899999999999998876654221 11222233222333333222 26899999999999887654
No 349
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.92 E-value=5 Score=41.21 Aligned_cols=138 Identities=19% Similarity=0.198 Sum_probs=72.7
Q ss_pred CCCEEEEeeCCC------cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC---
Q 013274 55 EERYLLSGASDS------SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD--- 125 (446)
Q Consensus 55 ~~~~l~s~s~Dg------~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D--- 125 (446)
.+.+++.||.++ ++..+|..++..... +.++ +.-.-.++++. ++.++++||.|
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~-a~m~---------------~~r~~~~~~~~--~~~lYv~GG~~~~~ 345 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL-APMP---------------SPRCRVGVAVL--NGKLYVVGGYDSGS 345 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeec-CCCC---------------cccccccEEEE--CCEEEEEccccCCC
Confidence 456778888773 688888876643211 0000 00011122332 56889999999
Q ss_pred ---CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC-----cEEEEeCCCCceee--eeeCCCCCeEE
Q 013274 126 ---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-----QVRLCDIASGAISQ--TLSGHRDGIMT 195 (446)
Q Consensus 126 ---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~-----~v~vwd~~~~~~~~--~l~~h~~~v~s 195 (446)
.++-.||....+-...-++........... .++.+.|.|+.|+ +|..||.++.+.-. .+.......-.
T Consensus 346 ~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv 423 (571)
T KOG4441|consen 346 DRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGV 423 (571)
T ss_pred cccceEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEE
Confidence 467777877666443223322222222222 2456788888876 58888888765321 11111111122
Q ss_pred EEEecCCCeEEEEeeCCCcE
Q 013274 196 VEWSTSSEWILVTGGCDGAI 215 (446)
Q Consensus 196 v~~s~~~~~~l~S~s~Dg~I 215 (446)
+.+ ++ .+.+.|+.|+.-
T Consensus 424 ~~~--~g-~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 424 AVL--GG-KLYIIGGGDGSS 440 (571)
T ss_pred EEE--CC-EEEEEcCcCCCc
Confidence 222 34 467788876643
No 350
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.92 E-value=0.076 Score=34.00 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=28.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 397 EYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 397 ~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
..|.+++|+|...+||.|+.||.|.|+.++..
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 46899999999999999999999999988544
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=4.4 Score=39.35 Aligned_cols=222 Identities=17% Similarity=0.140 Sum_probs=134.2
Q ss_pred EEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee--CCCcEEEEeCCCCceeeee
Q 013274 109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGAISQTL 186 (446)
Q Consensus 109 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs--~d~~v~vwd~~~~~~~~~l 186 (446)
+..++.....+++...++.|.+-|+++.+.............+++.+... .+.++-. .++.+.+.|-.+++.....
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCC--EEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 34555455577777778999999988877776666544455667766532 3444444 4789999999998887775
Q ss_pred eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274 187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP 266 (446)
Q Consensus 187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (446)
..-..+ ..++++|+++.++++-..++.|.+.|.......+ ......
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~------------------------------- 202 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSL------------------------------- 202 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cccccc-------------------------------
Confidence 543344 8899999999777777788999999965432110 000000
Q ss_pred cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEE-eecC--CcEEEEecCcCce
Q 013274 267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSD--SRIRLWDVESGRN 343 (446)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s-gs~D--~~i~lWd~~~~~~ 343 (446)
..-...-..+.++|+|.++.. ...+ +++-..|..++..
T Consensus 203 ---------------------------------------~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 203 ---------------------------------------VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred ---------------------------------------cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 000011244678899985433 3333 5888888877542
Q ss_pred eeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeecCceEEEeccccc---ceEEEEEcCCC
Q 013274 344 TLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYE---YVNCCCFSSQD 408 (446)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l~gH~~---~v~~~~fSpd~ 408 (446)
..... ......+..+...|++..+++.. ...+.+.|..+......+..... .+..+++.+..
T Consensus 244 ~~~~~---~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 244 TATDL---PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEecc---ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 21101 11111345567888888877762 25677777766666555443332 35556665543
No 352
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.74 E-value=7.7 Score=42.12 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=47.0
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s 123 (446)
+.|.++.|-. +..-++-+..+|.|.+=|.++...... .--..+|.++.|+| |+++++-..
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eiv------------------g~vd~GI~aaswS~-Dee~l~liT 128 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITALGDIILVDPETLELEIV------------------GNVDNGISAASWSP-DEELLALIT 128 (1265)
T ss_pred cceEEEEEec-ccceEEEEecCCcEEEEcccccceeee------------------eeccCceEEEeecC-CCcEEEEEe
Confidence 5788888864 455677777888888888876543211 01234677888887 788888777
Q ss_pred CCCeEEEEE
Q 013274 124 YDHYVKVWD 132 (446)
Q Consensus 124 ~D~~i~iWd 132 (446)
.++++.+=+
T Consensus 129 ~~~tll~mT 137 (1265)
T KOG1920|consen 129 GRQTLLFMT 137 (1265)
T ss_pred CCcEEEEEe
Confidence 777776653
No 353
>PHA02713 hypothetical protein; Provisional
Probab=94.73 E-value=1.3 Score=45.29 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=18.8
Q ss_pred CCCEEEEeecCC--cEEEEecCcCce
Q 013274 320 DGMYLLSAGSDS--RIRLWDVESGRN 343 (446)
Q Consensus 320 dg~~l~sgs~D~--~i~lWd~~~~~~ 343 (446)
+|+..+.||.|+ .+..||+.+.+-
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccc
Confidence 678888899888 778888877653
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.64 E-value=1.7 Score=42.65 Aligned_cols=120 Identities=9% Similarity=0.002 Sum_probs=64.6
Q ss_pred EEEccCCCEE-EEeecCCcEEEE--ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--CceEEE--EeecCc
Q 013274 315 LKVTEDGMYL-LSAGSDSRIRLW--DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAF--DIWSGK 387 (446)
Q Consensus 315 l~fs~dg~~l-~sgs~D~~i~lW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--d~~~~~ 387 (446)
-.|+|||++| .+...|+...+| |+.++.. . .+....+......++|++..++..++ +.-.+| +...+.
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~--~---~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL--P---RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCcc--e---ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 3599999865 566778877666 5555431 1 11111223335567888887666543 233444 333332
Q ss_pred eEEEecccccceEEEEEcCCCCEEEEeeCC-Cc--EEEeCCCCCCCCCcCCCccCc
Q 013274 388 TCLTFRGHYEYVNCCCFSSQDQELYTGGND-RQ--ILVWCPSRHISDGVDAGPMQD 440 (446)
Q Consensus 388 ~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D-~~--v~vW~~~~~~~~~~~~~~~~~ 440 (446)
...+.-+.+.=.+-.+||||++++-.+.. +. |.+.++..+--.+.+.++..+
T Consensus 318 -~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~ 372 (425)
T COG0823 318 -VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLN 372 (425)
T ss_pred -eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccC
Confidence 22222222222277899999999977643 33 666666544324444444433
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.43 E-value=3.5 Score=40.55 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=61.5
Q ss_pred eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCe
Q 013274 127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW 204 (446)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~ 204 (446)
.+.++|+++++........+....-.|+|++ ..++.+...|+ .|++.|+.++...+ +..-.+.-..=.|+|+|++
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG--~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ 295 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDG--SKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSK 295 (425)
T ss_pred eEEEEeccCCccceeeccCCccCCccCCCCC--CEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCE
Confidence 5888899888766666666655556677764 35666666666 46777887776433 4433333346679999999
Q ss_pred EEEEeeCCCcEEEEEc
Q 013274 205 ILVTGGCDGAIRFWDI 220 (446)
Q Consensus 205 ~l~S~s~Dg~I~iWd~ 220 (446)
+..+.+..|.-.||-.
T Consensus 296 ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 296 IVFTSDRGGRPQIYLY 311 (425)
T ss_pred EEEEeCCCCCcceEEE
Confidence 8777777787666644
No 356
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.35 E-value=3.6 Score=36.70 Aligned_cols=70 Identities=17% Similarity=0.081 Sum_probs=53.2
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~ 187 (446)
+++++-|.+.+.+.+-+.++|.....+...+.+-.-+... .+..++..|+.|++.+..|.++..++...+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d--~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD--FDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc--CCCceEEEecCCCcEEEecccccceEEecc
Confidence 5679999999999999999998887777655442222211 234588999999999999999988776654
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.18 E-value=6 Score=38.51 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=28.6
Q ss_pred eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCcee
Q 013274 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF 226 (446)
Q Consensus 185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~ 226 (446)
.+....++|++++.|.-| +++.|..+|.+.|-|+|....+
T Consensus 81 l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI 120 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVI 120 (395)
T ss_dssp EE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEE
T ss_pred heeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEE
Confidence 344568999999998655 5788999999999999976543
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.27 Score=48.81 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=61.3
Q ss_pred ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE-EEEEecCCCeEEEEeeCCCcEEEEEccCCce
Q 013274 147 KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGC 225 (446)
Q Consensus 147 ~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~-sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~ 225 (446)
.+..+.+.| .-.++|.+..+|.|-+.-++ -..+.+++-|..+++ +++|.|+|+ +|+.|=.||+|++-|..++..
T Consensus 22 ~i~~~ewnP---~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 22 NIKRIEWNP---KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ceEEEEEcC---ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 455566665 34588999999999888887 666778887888887 999999998 578899999999999988765
Q ss_pred eEE
Q 013274 226 FRV 228 (446)
Q Consensus 226 ~~~ 228 (446)
+..
T Consensus 97 l~~ 99 (665)
T KOG4640|consen 97 LVS 99 (665)
T ss_pred eec
Confidence 443
No 359
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=0.35 Score=51.06 Aligned_cols=69 Identities=23% Similarity=0.414 Sum_probs=52.2
Q ss_pred EEEEeeCCCcEEEEeCCCCce-eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeec
Q 013274 162 LIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231 (446)
Q Consensus 162 ~lasgs~d~~v~vwd~~~~~~-~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~ 231 (446)
.++.|++.|.+-..|..+.-. ...-..-+++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeee
Confidence 577888888898888876422 122233467999999999987 467888999999999998877766643
No 360
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.46 E-value=0.25 Score=31.63 Aligned_cols=30 Identities=7% Similarity=0.106 Sum_probs=27.4
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274 310 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 339 (446)
Q Consensus 310 ~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~ 339 (446)
..|.+++|+|...+||.|+.||.|.++.+.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 358999999999999999999999999873
No 361
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.29 E-value=0.36 Score=47.03 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=61.9
Q ss_pred EEEeCCCeEEEEECCCCee-eEEE----ecCCceEEeeeccCC-CCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274 120 VTGSYDHYVKVWDTNCTRV-VMNF----KMPGKVYRTAMSPLA-ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (446)
Q Consensus 120 ~s~s~D~~i~iWd~~~~~~-~~~~----~~~~~~~~~~~~~~~-~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v 193 (446)
+.|=.|..|.-||..-... .... +..... .|++.. ...-+|+.||.+|.|++||--.......|++-..+|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~---nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I 474 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKN---NFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAI 474 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeecccccccc---ccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCce
Confidence 3455678899999752211 1101 111111 122211 123478999999999999973333445688999999
Q ss_pred EEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274 194 MTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~ 221 (446)
..|..+-+|+|+|+|| +..+.+=|++
T Consensus 475 ~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 475 KHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred eeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 9999999999977554 5677777754
No 362
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.19 E-value=0.31 Score=30.29 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=27.3
Q ss_pred cceeEEEeecCCC--CEEEEeeCCCcEEEEEccc
Q 013274 44 GSINSLQVDLTEE--RYLLSGASDSSVAVYDVQR 75 (446)
Q Consensus 44 ~~v~~l~~s~~~~--~~l~s~s~Dg~i~lWd~~~ 75 (446)
|+|.++.|||..+ ++|+-+-.-|-|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5789999997666 7888888889999999874
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.03 E-value=7.3 Score=36.70 Aligned_cols=147 Identities=14% Similarity=0.249 Sum_probs=81.9
Q ss_pred CCEEEEeeC----------CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274 56 ERYLLSGAS----------DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD 125 (446)
Q Consensus 56 ~~~l~s~s~----------Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D 125 (446)
..+||.|.. .|.|.++++..... .....-.. +....+++|+++..+ ++.++++. .
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~--------~~~~l~~i---~~~~~~g~V~ai~~~--~~~lv~~~--g 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPE--------NNFKLKLI---HSTEVKGPVTAICSF--NGRLVVAV--G 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-------------EEEEE---EEEEESS-EEEEEEE--TTEEEEEE--T
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccc--------cceEEEEE---EEEeecCcceEhhhh--CCEEEEee--c
Confidence 357776633 28899999876300 00001111 112456789888877 45444433 3
Q ss_pred CeEEEEECCCCe-eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-Cceeeeee--CCCCCeEEEEEecC
Q 013274 126 HYVKVWDTNCTR-VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLS--GHRDGIMTVEWSTS 201 (446)
Q Consensus 126 ~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-~~~~~~l~--~h~~~v~sv~~s~~ 201 (446)
+.|.+|++...+ ......+....+...+... ..+++.|.....+.++..+. +.....+. ...-.++++.|-++
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d 183 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVD 183 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-S
T ss_pred CEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecC
Confidence 799999998777 5444333333222333322 23678887777787774443 22122222 23445788888866
Q ss_pred CCeEEEEeeCCCcEEEEEcc
Q 013274 202 SEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 202 ~~~~l~S~s~Dg~I~iWd~~ 221 (446)
++ .++.+..+|.+.++...
T Consensus 184 ~~-~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 184 ED-TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SS-EEEEEETTSEEEEEEE-
T ss_pred Cc-EEEEEcCCCeEEEEEEC
Confidence 65 57889999999998764
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.82 E-value=7.5 Score=36.37 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=47.9
Q ss_pred CCeEEEEcCCCcEEEEeCC-----C-----ceEEEEee-cCceEEEecccccceEEEEEcCCCCEEEEee-CCCcEEEeC
Q 013274 357 KPIQLATTQDPAVVFVPCM-----T-----AVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVWC 424 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~-----~-----~~~~~d~~-~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs-~D~~v~vW~ 424 (446)
........+++.+.+.... . .-.+|-+. .+...+.+..|-..-+.++||||++.|+-+. .-+.|..++
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 3445667777777766444 1 12566666 5777778888888889999999997776544 446666665
Q ss_pred CC
Q 013274 425 PS 426 (446)
Q Consensus 425 ~~ 426 (446)
.+
T Consensus 192 ~d 193 (307)
T COG3386 192 LD 193 (307)
T ss_pred cC
Confidence 55
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.81 E-value=9.9 Score=36.88 Aligned_cols=189 Identities=13% Similarity=0.160 Sum_probs=119.5
Q ss_pred eEEEEeeCCCcEEEEeCCCCceeeeee-CCCCCeEEEEEecCCCeEEEEee--CCCcEEEEEccCCceeEEeeccccccc
Q 013274 161 MLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGG--CDGAIRFWDIRRAGCFRVLDQSQSQLG 237 (446)
Q Consensus 161 ~~lasgs~d~~v~vwd~~~~~~~~~l~-~h~~~v~sv~~s~~~~~~l~S~s--~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 237 (446)
...+....++.|.+.|.++.+....+. +. .-..++++|+++.+.++-+ .++++.+-|..+.+....+.
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~------- 157 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP------- 157 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-------
Confidence 355555557899999988877666554 33 4567889999887666655 35777777755443221110
Q ss_pred CCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEE
Q 013274 238 RRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV 317 (446)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~f 317 (446)
.+ ..+ ..+++
T Consensus 158 --------------------------------------------------------------------vG-~~P-~~~a~ 167 (381)
T COG3391 158 --------------------------------------------------------------------VG-NTP-TGVAV 167 (381)
T ss_pred --------------------------------------------------------------------cC-CCc-ceEEE
Confidence 00 012 66889
Q ss_pred ccCCCEE-EEeecCCcEEEEecCcCceeeeeeeE-EEeecCCCeEEEEcCCCcEEEEeCCC----ceEEEEeecCceEEE
Q 013274 318 TEDGMYL-LSAGSDSRIRLWDVESGRNTLVNFET-VRLQTSKPIQLATTQDPAVVFVPCMT----AVKAFDIWSGKTCLT 391 (446)
Q Consensus 318 s~dg~~l-~sgs~D~~i~lWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~ 391 (446)
+|+|..+ ++-..+++|.+.|..+..... .... .......+..+...+++..+++.... .+...|..++.....
T Consensus 168 ~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 168 DPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 9999854 555689999999976542211 0000 11123456678888998877776543 566667666666554
Q ss_pred -ecccccceEEEEEcCCCCEEEEeeC-CCcEEEeCCCCCC
Q 013274 392 -FRGHYEYVNCCCFSSQDQELYTGGN-DRQILVWCPSRHI 429 (446)
Q Consensus 392 -l~gH~~~v~~~~fSpd~~~lvtgs~-D~~v~vW~~~~~~ 429 (446)
+..-......++++|+|+.+..... .+.+.+-+..+..
T Consensus 247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 247 DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 3333324567899999999988744 4778888777654
No 366
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.48 E-value=0.45 Score=29.59 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=25.4
Q ss_pred cCeEEEEEccCCC---EEEEeecCCcEEEEecCc
Q 013274 310 GAVTGLKVTEDGM---YLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 310 ~~v~~l~fs~dg~---~l~sgs~D~~i~lWd~~~ 340 (446)
|+|+++.|||+.. +|+-.-.-+.|.++|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998554 777777778999999985
No 367
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.40 E-value=0.36 Score=41.96 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=66.4
Q ss_pred CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeE--EEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccc-
Q 013274 321 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ--LATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHY- 396 (446)
Q Consensus 321 g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~- 396 (446)
+..|+.|+.||.|.+|+..-.-+..-.+.. ....+. +....++.+..+++ .+.++.|.+.-.+.+.....|+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s----~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS----GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhc----ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC
Confidence 456788999999999987621110000000 001111 12222333444444 4678999998888888888888
Q ss_pred cceEEEEEcCCCCEEEEe--eCCCcEEEeCCC
Q 013274 397 EYVNCCCFSSQDQELYTG--GNDRQILVWCPS 426 (446)
Q Consensus 397 ~~v~~~~fSpd~~~lvtg--s~D~~v~vW~~~ 426 (446)
.++..+..+..++.|+.. |.|+.++.|+++
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 777777777788888888 999999999886
No 368
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.30 E-value=11 Score=36.14 Aligned_cols=153 Identities=11% Similarity=0.110 Sum_probs=65.9
Q ss_pred EeecCCCCEEEEeeCCCcEEEE--EcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCe
Q 013274 50 QVDLTEERYLLSGASDSSVAVY--DVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY 127 (446)
Q Consensus 50 ~~s~~~~~~l~s~s~Dg~i~lW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~ 127 (446)
+|..++.++|.++..||.-.+| |+++++.. .+... .+.. ......++. ...++-.....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~------------QLTdg----~g~~-~~g~~~s~~-~~~~~Yv~~~~~ 103 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEIT------------QLTDG----PGDN-TFGGFLSPD-DRALYYVKNGRS 103 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE------------E---S----S-B--TTT-EE-TT-SSEEEEEETTTE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEE------------ECccC----CCCC-ccceEEecC-CCeEEEEECCCe
Confidence 3555444666666668876666 66654321 11110 0111 111234443 445443445568
Q ss_pred EEEEECCCCeeeEEEecCCceE-EeeeccCCCCceEEEEe----------------------eCCCcEEEEeCCCCceee
Q 013274 128 VKVWDTNCTRVVMNFKMPGKVY-RTAMSPLAASHMLIAAG----------------------TEDVQVRLCDIASGAISQ 184 (446)
Q Consensus 128 i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lasg----------------------s~d~~v~vwd~~~~~~~~ 184 (446)
++--|+++.+...-+..+.... ...+...+ +...++.. -....|...|+.+|+.-.
T Consensus 104 l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 104 LRRVDLDTLEERVVYEVPDDWKGYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp EEEEETTT--EEEEEE--TTEEEEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred EEEEECCcCcEEEEEECCcccccccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 8888998877655555543321 12222111 11122111 012235666888876544
Q ss_pred eeeCCCCCeEEEEEecCCCeEEEEee---CCC-cEEEEEccC
Q 013274 185 TLSGHRDGIMTVEWSTSSEWILVTGG---CDG-AIRFWDIRR 222 (446)
Q Consensus 185 ~l~~h~~~v~sv~~s~~~~~~l~S~s---~Dg-~I~iWd~~~ 222 (446)
.+. -..-+-.+.|+|....+|+=|- +|. .-|||-++.
T Consensus 183 v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 183 VFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp EEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred EEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 443 2344567889998877544433 344 247886654
No 369
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.01 E-value=9.2 Score=34.63 Aligned_cols=119 Identities=11% Similarity=0.094 Sum_probs=74.5
Q ss_pred cEeEEEEeecCCcEEEEEeCCC--eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce
Q 013274 105 AISSAIWYPVDTGLFVTGSYDH--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (446)
Q Consensus 105 ~V~~~~~~~~~~~~l~s~s~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~ 182 (446)
..+....+-.++.++-|.|.-| .|+.+|+++++.+....++...+.=.++.. ++.+..-.-.++...+||.++-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3444455523677778887766 799999999999888877765433222222 234555667889999999999888
Q ss_pred eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEe
Q 013274 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL 229 (446)
Q Consensus 183 ~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~ 229 (446)
+.++. ..+.=+.++. +++.++ .+.....+.++|..+-+..+.+
T Consensus 123 ~~~~~-y~~EGWGLt~--dg~~Li-~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 123 IGTFP-YPGEGWGLTS--DGKRLI-MSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp EEEEE--SSS--EEEE--CSSCEE-EE-SSSEEEEE-TTT-SEEEEE
T ss_pred EEEEe-cCCcceEEEc--CCCEEE-EECCccceEEECCcccceEEEE
Confidence 87775 3456678874 455544 4444568999998765554444
No 370
>PHA02713 hypothetical protein; Provisional
Probab=91.89 E-value=2.2 Score=43.73 Aligned_cols=103 Identities=9% Similarity=0.029 Sum_probs=54.8
Q ss_pred CCcEEEEEeCCC-----------------------eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC--
Q 013274 115 DTGLFVTGSYDH-----------------------YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED-- 169 (446)
Q Consensus 115 ~~~~l~s~s~D~-----------------------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d-- 169 (446)
++.+.+.||.++ ++..||..+.+....-+++.......... .++.+.+.|+.+
T Consensus 398 ~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~ 475 (557)
T PHA02713 398 DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDE 475 (557)
T ss_pred CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCC
Confidence 577788887653 47778877665433222221111111111 123455555543
Q ss_pred ----CcEEEEeCCC-Cce--eeeeeCCCCCeEEEEEecCCCeEEEEeeCCC--cEEEEEccC
Q 013274 170 ----VQVRLCDIAS-GAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--AIRFWDIRR 222 (446)
Q Consensus 170 ----~~v~vwd~~~-~~~--~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg--~I~iWd~~~ 222 (446)
..+..||.++ +.. +..++.+......+.+ ++ .+.+.|+.|+ ++-.||..+
T Consensus 476 ~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 476 KNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CccceeEEEecCCCCCCeeEccccCcccccceeEEE--CC-EEEEEeeecceeehhhcCccc
Confidence 2478899987 542 2334433344444444 44 4678999888 566666554
No 371
>PHA03098 kelch-like protein; Provisional
Probab=91.07 E-value=15 Score=37.46 Aligned_cols=66 Identities=11% Similarity=0.194 Sum_probs=34.6
Q ss_pred CCcEEEEEeCC-----CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC------CcEEEEeCCCCce
Q 013274 115 DTGLFVTGSYD-----HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED------VQVRLCDIASGAI 182 (446)
Q Consensus 115 ~~~~l~s~s~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d------~~v~vwd~~~~~~ 182 (446)
++.+++.||.+ .++..||..+.+....-+++......+... .++.+.+.|+.+ ..+..||+.+++.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 56788888876 357778877665432222221111111111 123455555521 4588999887643
No 372
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.75 E-value=0.55 Score=48.41 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=68.6
Q ss_pred EEccCCCEEEEee----cCCcEEEEecCcCceee-eeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceE
Q 013274 316 KVTEDGMYLLSAG----SDSRIRLWDVESGRNTL-VNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTC 389 (446)
Q Consensus 316 ~fs~dg~~l~sgs----~D~~i~lWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~ 389 (446)
.|+|...+++.++ ..|.|.||- .+|.+.. +.+ +.....++..|...+++.+- .+.+.+|.-.+.+..
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~------P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY------PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc------ceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 3555555544433 356788873 3443211 111 11223355566655555542 245677877777777
Q ss_pred EEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274 390 LTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426 (446)
Q Consensus 390 ~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~ 426 (446)
.....|+.+|..+.|||||..|+|+..=|.|.+|..+
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 7888999999999999999999999999999999765
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=1.2 Score=44.34 Aligned_cols=90 Identities=22% Similarity=0.331 Sum_probs=62.9
Q ss_pred cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eE-EeeeccCCCCceEEEEeeCCCcEEEEeCCCCce
Q 013274 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VY-RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (446)
Q Consensus 105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~ 182 (446)
.+.-+.|.| .-+++|.+-.+|.|-+..++ -+.+.+++.++. +. +.+|-++ +.++|.|-.||+|++.|++++..
T Consensus 22 ~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~D---GkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 22 NIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPD---GKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCC---CCEEEEEecCCeEEEEEccCCCc
Confidence 344566776 46689999999999998888 455666665443 33 5666654 67999999999999999999876
Q ss_pred eeee-eCCCCCeEEEEEe
Q 013274 183 SQTL-SGHRDGIMTVEWS 199 (446)
Q Consensus 183 ~~~l-~~h~~~v~sv~~s 199 (446)
+... ..-...|.++-|+
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 5442 2234445555554
No 374
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.43 E-value=9.7 Score=35.46 Aligned_cols=102 Identities=11% Similarity=0.150 Sum_probs=54.1
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEe-ecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCce
Q 013274 310 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL-QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKT 388 (446)
Q Consensus 310 ~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 388 (446)
+.+..+..++||++++.++....+.-||.....- ..... .......+.+.+++.+.+.+-...++.=+ ....
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-----~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~--~~~~ 217 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-----QPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSD--DPDD 217 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS------EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE---TTE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccc-----eEEccCccceehhceecCCCCEEEEeCCcEEEEcc--CCCC
Confidence 5588888899999999888777778887653211 11111 12344567788888777776554444433 1111
Q ss_pred EEEecc-------cccceEEEEEcCCCCEEEEeeCCC
Q 013274 389 CLTFRG-------HYEYVNCCCFSSQDQELYTGGNDR 418 (446)
Q Consensus 389 ~~~l~g-------H~~~v~~~~fSpd~~~lvtgs~D~ 418 (446)
..++.. -.-.+.+++|.+++...+.|+...
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence 112111 122379999999998888777653
No 375
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.91 E-value=20 Score=35.03 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=47.1
Q ss_pred CCceEEeeeccCCC--CceEEEEeeCCCcEEEEeCCCCceeeeeeC--CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274 145 PGKVYRTAMSPLAA--SHMLIAAGTEDVQVRLCDIASGAISQTLSG--HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (446)
Q Consensus 145 ~~~~~~~~~~~~~~--~~~~lasgs~d~~v~vwd~~~~~~~~~l~~--h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~ 220 (446)
+...+.+...+++. ++..+..-+.||.+.+++-+.-.....+.+ ..++ +.|.+... .|++++.+..+.-|..
T Consensus 128 ~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y~~~tD-sfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 128 QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP---LCYCPRTD-SFVTASSSWTLECYKY 203 (418)
T ss_pred ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC---eEEeecCC-EEEEecCceeEEEecH
Confidence 34455566656543 257888889999999999776655445543 3444 44555555 4678887777777754
No 376
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.90 E-value=9.8 Score=36.45 Aligned_cols=157 Identities=17% Similarity=0.285 Sum_probs=68.4
Q ss_pred ceeEEEeecCCCCEEEEeeC---CC-cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274 45 SINSLQVDLTEERYLLSGAS---DS-SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (446)
Q Consensus 45 ~v~~l~~s~~~~~~l~s~s~---Dg-~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~ 120 (446)
-+.-+.|+|.+..+|+-|=+ |. .-|||-+++... .. +++..-......||. +..++|..+.
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-----~~---~~v~~~~~~e~~gHE-------fw~~DG~~i~ 253 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-----NV---KKVHRRMEGESVGHE-------FWVPDGSTIW 253 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------EESS---TTEEEEEE-------EE-TTSS-EE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-----cc---eeeecCCCCcccccc-------cccCCCCEEE
Confidence 34678899988777766522 33 248897654321 00 111000000111332 3333555432
Q ss_pred E-----EeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC----------------CCcEEEEeCCC
Q 013274 121 T-----GSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE----------------DVQVRLCDIAS 179 (446)
Q Consensus 121 s-----~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~----------------d~~v~vwd~~~ 179 (446)
- ++.+..|.-.|+.++.......++...+ ...++ +..+++.=+. +..|++++++.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H-~~ss~---Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~ 329 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSH-FMSSP---DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA 329 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE-SEEE-EEE-T---TSSEEEEEE-------------------EEEEEETTT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCCceee-eEEcC---CCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence 2 2335567777777776544344432221 11112 2234332122 22577888887
Q ss_pred Cceee---------eeeCCCC-CeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274 180 GAISQ---------TLSGHRD-GIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (446)
Q Consensus 180 ~~~~~---------~l~~h~~-~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~ 220 (446)
+.... .+.+|.. .=.-+.|+||++++|.++...|...||-+
T Consensus 330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 65321 1122211 11457899999999999999998888854
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.64 E-value=5 Score=38.90 Aligned_cols=99 Identities=12% Similarity=0.164 Sum_probs=51.5
Q ss_pred CCeEEEEECCCCeeeEEEecCCc---eEEeeeccCCCCceEEEEeeCCCcEEEEeC-CCCce----eeeeeC--------
Q 013274 125 DHYVKVWDTNCTRVVMNFKMPGK---VYRTAMSPLAASHMLIAAGTEDVQVRLCDI-ASGAI----SQTLSG-------- 188 (446)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lasgs~d~~v~vwd~-~~~~~----~~~l~~-------- 188 (446)
-+++.+||+.+.+.+.++.+... ..-+-+.+......=++.+-...+|..|-- +.+.. +-.+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 57899999999999998887532 334445443322222333333445544433 44421 111211
Q ss_pred ---------CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274 189 ---------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (446)
Q Consensus 189 ---------h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~ 223 (446)
-..-|+.|.+|.|++++.+++=.+|.||.||+...
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 03457889999999988778778999999999764
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.52 E-value=1.7 Score=46.24 Aligned_cols=99 Identities=22% Similarity=0.309 Sum_probs=64.9
Q ss_pred cEEEEEeCCCeEEEEECCCCee--eEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRV--VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~ 194 (446)
..++.|+.-|.+-..|....-. .......+++.++++.. ++.+++.|-.+|.|.+||+..++..+.+..|..+.+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~---dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ---DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC---CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3567777777777777654211 22223345677777765 456899999999999999999998888877766665
Q ss_pred EEEE---ecCCCeEEEEeeCCCcEEEEEcc
Q 013274 195 TVEW---STSSEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 195 sv~~---s~~~~~~l~S~s~Dg~I~iWd~~ 221 (446)
+|-+ ..++. .+.++..-|. +|.+.
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 5443 22333 4566655554 67653
No 379
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.00 E-value=20 Score=33.71 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=84.6
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECC
Q 013274 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN 134 (446)
Q Consensus 55 ~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 134 (446)
+++-+.+-..||++.-..+...-+. ..+...++..+....-.|. .+ ...+..++=-++.|.|.--|+.
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~-----~~~~t~~F~~~~dp~f~~~------~~-~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKE-----AQKSTKVFDPDDDPLFEHP------AY-SRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSE-----EEEEEEESSTTTS-B-S--------EE-ETTTTEEEEEBTTSEEEEEEET
T ss_pred CCCceEEEecCCceEEEEECCCCCE-----eEeeccccCCCCccccccc------ce-ECCCCeEEEEecCCEEEEEecc
Confidence 3445667788999888888632211 0111111111110000111 11 1234455556788888888876
Q ss_pred CCeee--EEEec-----------CCceEEeeeccCCCCceEEEEe-e-----CCC--cEEEEeCCCCceeeeeeCCCCCe
Q 013274 135 CTRVV--MNFKM-----------PGKVYRTAMSPLAASHMLIAAG-T-----EDV--QVRLCDIASGAISQTLSGHRDGI 193 (446)
Q Consensus 135 ~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~lasg-s-----~d~--~v~vwd~~~~~~~~~l~~h~~~v 193 (446)
..... ..+.. +|...-+++++.. +..+++-- . .|+ .|-++|+.+++.+.+++- ..++
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~ 291 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI 291 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence 54432 22221 1112223443321 12222221 1 122 477889999999988873 2357
Q ss_pred EEEEEecCCCeEEEEe-eCCCcEEEEEccCCceeEEee
Q 013274 194 MTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLD 230 (446)
Q Consensus 194 ~sv~~s~~~~~~l~S~-s~Dg~I~iWd~~~~~~~~~~~ 230 (446)
.+|.++.+.+-.|++. ..++.+.+||..+++.++.++
T Consensus 292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 8999998877555544 468999999999998887775
No 380
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.84 E-value=29 Score=36.27 Aligned_cols=105 Identities=13% Similarity=0.184 Sum_probs=64.4
Q ss_pred CCcEEEEEeCCCeEEEEECCC-------C-------------eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274 115 DTGLFVTGSYDHYVKVWDTNC-------T-------------RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL 174 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~-------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v 174 (446)
+...|+.|.+||.|.+|.+++ . ++-..+........++++.. ....+||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~-~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDY-KKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEec-CcceEEEEecCCceEEE
Confidence 446889999999999997531 0 01122223334445555421 23457888777776766
Q ss_pred EeCCC--Cce-eeeeeCCCCCeEEEEEecCC---C--eEEEEeeCCCcEEEEEc
Q 013274 175 CDIAS--GAI-SQTLSGHRDGIMTVEWSTSS---E--WILVTGGCDGAIRFWDI 220 (446)
Q Consensus 175 wd~~~--~~~-~~~l~~h~~~v~sv~~s~~~---~--~~l~S~s~Dg~I~iWd~ 220 (446)
|=... .+. ...-..|...|.+|+|.++. . ..+++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 64432 221 11111367789999998765 1 24678888999999888
No 381
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.82 E-value=2 Score=25.89 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=19.1
Q ss_pred cccceEEEEEcCCCCEEEEe-eCC--CcEEEe
Q 013274 395 HYEYVNCCCFSSQDQELYTG-GND--RQILVW 423 (446)
Q Consensus 395 H~~~v~~~~fSpd~~~lvtg-s~D--~~v~vW 423 (446)
....-...+|||||++|+=+ ..+ +.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34456788999999998844 444 555555
No 382
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.40 E-value=1.9 Score=41.34 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=58.4
Q ss_pred ccCCCEEEEe---------ecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCce
Q 013274 318 TEDGMYLLSA---------GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKT 388 (446)
Q Consensus 318 s~dg~~l~sg---------s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 388 (446)
|||+++++.. +..+.+.++|+++++.... .. .......+..+|++..++......+.++++.+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--~~---~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--TP---PPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--S----EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--cC---CccccccceeecCCCeeEEEecCceEEEECCCCCe
Confidence 5677766542 2345688999998643221 11 12345667889999888877777777777655533
Q ss_pred EE-Eecc---------------c-ccceEEEEEcCCCCEEEEeeCC-CcEEEe
Q 013274 389 CL-TFRG---------------H-YEYVNCCCFSSQDQELYTGGND-RQILVW 423 (446)
Q Consensus 389 ~~-~l~g---------------H-~~~v~~~~fSpd~~~lvtgs~D-~~v~vW 423 (446)
.. +..| . -+.-..+-||||+++|+....| ..|+.+
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY 128 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence 21 2222 0 1223568899999999976654 445554
No 383
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.74 E-value=24 Score=31.97 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=64.0
Q ss_pred eEEEEEccCCCEEEEeecCCcEEEEe-cCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC----CCceEEEEee--
Q 013274 312 VTGLKVTEDGMYLLSAGSDSRIRLWD-VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC----MTAVKAFDIW-- 384 (446)
Q Consensus 312 v~~l~fs~dg~~l~sgs~D~~i~lWd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~-- 384 (446)
++.-.|+++|...+....+...+++. ..++......+..... ......+..++|+..++... ...+.+=-+.
T Consensus 68 l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~-~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 68 LTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGL-RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred cccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEeccccc-CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 44456888877666666666667663 2333222221111111 11445688999998876654 3344443332
Q ss_pred -cC------ceEEEecccccceEEEEEcCCCCEEEEeeC-CCcEEE-eCCCCCC
Q 013274 385 -SG------KTCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQILV-WCPSRHI 429 (446)
Q Consensus 385 -~~------~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~-D~~v~v-W~~~~~~ 429 (446)
.+ ............+++++|.+++++++-+.. +..+.. ..++...
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~ 200 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGP 200 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCc
Confidence 22 112233344568999999999999886554 443444 4455443
No 384
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=86.30 E-value=26 Score=31.94 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=77.8
Q ss_pred CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECC
Q 013274 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN 134 (446)
Q Consensus 55 ~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 134 (446)
.++.|+-|..+| +.++++....... . ..+...|..+...+.-+ .|+.-+ |+.+.++++.
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~---------~---------i~~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~ 64 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPT---------R---------ILKLSSITQLSVLPELN-LLLVLS-DGQLYVYDLD 64 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccce---------e---------EeecceEEEEEEecccC-EEEEEc-CCccEEEEch
Confidence 467888898888 8999883221110 0 11223377777776433 444444 4999999987
Q ss_pred CCeeeE---------------EEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-----ceeeeeeCCCCCeE
Q 013274 135 CTRVVM---------------NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-----AISQTLSGHRDGIM 194 (446)
Q Consensus 135 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-----~~~~~l~~h~~~v~ 194 (446)
.-.... .......+...+......+...++.+. ...|.+|..... ...+.+. -.+.+.
T Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~ 142 (275)
T PF00780_consen 65 SLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPS 142 (275)
T ss_pred hhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcE
Confidence 543332 111122233222111222333444444 347888877553 3444444 347789
Q ss_pred EEEEecCCCeEEEEeeCCCcEEEEEccCCc
Q 013274 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224 (446)
Q Consensus 195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~ 224 (446)
++.|.++ . ++-|. .+...+.|+.++.
T Consensus 143 ~i~~~~~--~-i~v~~-~~~f~~idl~~~~ 168 (275)
T PF00780_consen 143 SIAFLGN--K-ICVGT-SKGFYLIDLNTGS 168 (275)
T ss_pred EEEEeCC--E-EEEEe-CCceEEEecCCCC
Confidence 9999843 3 34444 3458888887654
No 385
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=85.95 E-value=33 Score=32.81 Aligned_cols=91 Identities=22% Similarity=0.216 Sum_probs=51.5
Q ss_pred CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee-eeeC-------C--------
Q 013274 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSG-------H-------- 189 (446)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~-~l~~-------h-------- 189 (446)
+.+.++|+++++...............++|++ ..+|... ++.|.++++.++...+ +..| -
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g---~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDG---KYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSS---TEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCC---CeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 46889999987654432223445667788763 3455543 6789999988774332 1112 0
Q ss_pred -CCCeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274 190 -RDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (446)
Q Consensus 190 -~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~ 220 (446)
-+.-.++-|||++++++..--.+..|+.+.+
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 1123567899999986544444555666554
No 386
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.42 E-value=4.4 Score=24.33 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCCCCeEEEEEecCCCeEEEEeeCC--CcEEEE
Q 013274 188 GHRDGIMTVEWSTSSEWILVTGGCD--GAIRFW 218 (446)
Q Consensus 188 ~h~~~v~sv~~s~~~~~~l~S~s~D--g~I~iW 218 (446)
.....-....|+|++++++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667889999999887787777 776666
No 387
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=85.14 E-value=29 Score=31.37 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=27.9
Q ss_pred eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeE
Q 013274 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR 227 (446)
Q Consensus 184 ~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~ 227 (446)
+.+.+-...+..++|.|+.+.+++.....+.|.-.++. ++.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr 57 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR 57 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE
Confidence 45566667799999999877777777778888777753 44433
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=84.97 E-value=3.9 Score=39.63 Aligned_cols=95 Identities=15% Similarity=0.261 Sum_probs=44.8
Q ss_pred cCCcEEEEecCcCceeeeeeeEEEeecC--CCeEE--EEcCCCcEEEEeCCCceEEEEee---c----CceEEEeccc--
Q 013274 329 SDSRIRLWDVESGRNTLVNFETVRLQTS--KPIQL--ATTQDPAVVFVPCMTAVKAFDIW---S----GKTCLTFRGH-- 395 (446)
Q Consensus 329 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~d~~---~----~~~~~~l~gH-- 395 (446)
-..++++||+.+.+..+ .+.+... .+..+ +..|+...-|+++.-+-.+|-.. + -+.+.++..-
T Consensus 220 yG~~l~vWD~~~r~~~Q----~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v 295 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQ----TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV 295 (461)
T ss_dssp S--EEEEEETTTTEEEE----EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred ccCeEEEEECCCCcEee----EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence 35789999999875422 2222211 23333 34455556666654433444322 1 2233333221
Q ss_pred ---------------ccceEEEEEcCCCCEEE-EeeCCCcEEEeCCCC
Q 013274 396 ---------------YEYVNCCCFSSQDQELY-TGGNDRQILVWCPSR 427 (446)
Q Consensus 396 ---------------~~~v~~~~fSpd~~~lv-tgs~D~~v~vW~~~~ 427 (446)
..-|+++.+|.|.++|. ++=.+|.||.+|++.
T Consensus 296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 34579999999999988 555699999998763
No 389
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=84.90 E-value=38 Score=33.16 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=55.4
Q ss_pred ceeEEEeecCCCCEEEEe-eCCC----cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274 45 SINSLQVDLTEERYLLSG-ASDS----SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (446)
Q Consensus 45 ~v~~l~~s~~~~~~l~s~-s~Dg----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l 119 (446)
.+...++|| ++++||-+ +..| ++++.|++++.... ..+ ..- ....+.|.+.+..++
T Consensus 125 ~~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------d~i-------~~~--~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 125 SLGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------DGI-------ENP--KFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------EEE-------EEE--ESEEEEECTTSSEEE
T ss_pred EeeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcC---------Ccc-------ccc--ccceEEEeCCCCEEE
Confidence 344567886 46655543 5555 49999998874321 000 000 111256776333344
Q ss_pred EEEeC----------CCeEEEEECCCCeee--EEEecCCc---eEEeeeccCCCCceEEEEeeC--C-CcEEEEeCCCC
Q 013274 120 VTGSY----------DHYVKVWDTNCTRVV--MNFKMPGK---VYRTAMSPLAASHMLIAAGTE--D-VQVRLCDIASG 180 (446)
Q Consensus 120 ~s~s~----------D~~i~iWd~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~lasgs~--d-~~v~vwd~~~~ 180 (446)
.+.-. ...|.+|.+-+.... ..+..... ...+..+.+. ..+++.... + ..+.+.|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~--~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDG--RYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTS--SEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcc--cEEEEEEEccccCCeEEEEecccc
Confidence 44422 234788888665432 23332222 2344444432 234433332 2 45788888764
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=84.83 E-value=52 Score=34.05 Aligned_cols=72 Identities=14% Similarity=0.036 Sum_probs=41.3
Q ss_pred CCeEEEEcCCCcEEEEeCCCceEE---EEeecCce-E---EEec-ccccceEEEEEcCCCCEEEEeeCCCcEEEe--CCC
Q 013274 357 KPIQLATTQDPAVVFVPCMTAVKA---FDIWSGKT-C---LTFR-GHYEYVNCCCFSSQDQELYTGGNDRQILVW--CPS 426 (446)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~-~---~~l~-gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW--~~~ 426 (446)
.+..+..++|+..++......+.+ ..-..|+. + ..+. +-...+.+++|.+++++++ +..+....+| .++
T Consensus 449 ~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V-~~~~~~~~v~~v~vD 527 (591)
T PRK13616 449 PISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVV-GRSDPEHPVWYVNLD 527 (591)
T ss_pred CcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEE-EecCCCCceEEEecC
Confidence 466788999998776654454444 22233431 1 1122 2233468899999998664 4445555566 445
Q ss_pred CCC
Q 013274 427 RHI 429 (446)
Q Consensus 427 ~~~ 429 (446)
++.
T Consensus 528 G~~ 530 (591)
T PRK13616 528 GSN 530 (591)
T ss_pred Ccc
Confidence 444
No 391
>PHA03098 kelch-like protein; Provisional
Probab=84.79 E-value=18 Score=36.83 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=50.2
Q ss_pred CCcEEEEEeCC------CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC--------CcEEEEeCCCC
Q 013274 115 DTGLFVTGSYD------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--------VQVRLCDIASG 180 (446)
Q Consensus 115 ~~~~l~s~s~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d--------~~v~vwd~~~~ 180 (446)
++.+++.||.+ ..+..||+.+.+....-.++......+... .++.+++.|+.+ ..+.+||.+++
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 56777777742 468888987765433222221111111111 123455555432 23889999887
Q ss_pred ceeee--eeCCCCCeEEEEEecCCCeEEEEeeCC-----CcEEEEEccC
Q 013274 181 AISQT--LSGHRDGIMTVEWSTSSEWILVTGGCD-----GAIRFWDIRR 222 (446)
Q Consensus 181 ~~~~~--l~~h~~~v~sv~~s~~~~~~l~S~s~D-----g~I~iWd~~~ 222 (446)
+.... +.........+.+ +++ +++.|+.+ +.|..||..+
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCC
Confidence 53321 1111111122222 444 56666654 4677777654
No 392
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.60 E-value=0.52 Score=48.95 Aligned_cols=117 Identities=14% Similarity=0.202 Sum_probs=72.7
Q ss_pred CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC--CeeeEEEe------cCCceEEeeeccCCCCceEEEEeeCCCcE
Q 013274 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC--TRVVMNFK------MPGKVYRTAMSPLAASHMLIAAGTEDVQV 172 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~lasgs~d~~v 172 (446)
|-.++|-.+.|...+...++ -.=|.+.|||++- |+....+. .......+.+.++..+...+..+-.++.|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 45566666655443333333 2237899999752 32211111 12234567777777666778888888999
Q ss_pred EEEeCCCCceeeeeeCCCCCeEEEE-----------EecCCCeEEEEeeCCCcEEEEEcc
Q 013274 173 RLCDIASGAISQTLSGHRDGIMTVE-----------WSTSSEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 173 ~vwd~~~~~~~~~l~~h~~~v~sv~-----------~s~~~~~~l~S~s~Dg~I~iWd~~ 221 (446)
++...++... ..+.+|...+..++ +||||. +|+.++.||.+++|.+.
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeee
Confidence 9887765533 34455765544433 688887 57888899999988753
No 393
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.53 E-value=17 Score=35.09 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=52.3
Q ss_pred eEEEEEccCCCEEEEee-----------cCC-cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceE
Q 013274 312 VTGLKVTEDGMYLLSAG-----------SDS-RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVK 379 (446)
Q Consensus 312 v~~l~fs~dg~~l~sgs-----------~D~-~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (446)
..+|+|.++|+.+++-. ..+ +|.+++-..+.-.......+......+.-+++.+++ +++++...+.
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEE
Confidence 57789999999877643 223 677775443211000000111112234446666666 4444444444
Q ss_pred EEEeecC------c--eE-EEecc----cccceEEEEEcCCCCEEEEee
Q 013274 380 AFDIWSG------K--TC-LTFRG----HYEYVNCCCFSSQDQELYTGG 415 (446)
Q Consensus 380 ~~d~~~~------~--~~-~~l~g----H~~~v~~~~fSpd~~~lvtgs 415 (446)
.+.-.++ + .+ ..+.. +...++.++|.|||.+.++-+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3321111 1 11 22332 234478999999998877655
No 394
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.46 E-value=4.5 Score=35.79 Aligned_cols=27 Identities=26% Similarity=0.658 Sum_probs=23.4
Q ss_pred EccCCCEEEEeecCCcEEEEecCcCce
Q 013274 317 VTEDGMYLLSAGSDSRIRLWDVESGRN 343 (446)
Q Consensus 317 fs~dg~~l~sgs~D~~i~lWd~~~~~~ 343 (446)
+..++.+|+.-+.+|.+++||+.+++.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~ 44 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKA 44 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCee
Confidence 556789999999999999999998754
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=84.12 E-value=19 Score=37.08 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=71.4
Q ss_pred CCCEEEEeeCCC-----cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCC---
Q 013274 55 EERYLLSGASDS-----SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDH--- 126 (446)
Q Consensus 55 ~~~~l~s~s~Dg-----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~--- 126 (446)
+|.+-|.||.|| +|..||..+........ . . ....+|. ....++.+.+.||.|+
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-------m---~-~~r~~~g-------v~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-------M---L-TRRSGHG-------VAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC-------C---C-cceeeeE-------EEEECCEEEEEcCcCCCcc
Confidence 577888888886 47777776654321100 0 0 0011222 2223688889998664
Q ss_pred ---eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC-----cEEEEeCCCCceeee--eeCCCCCeEEE
Q 013274 127 ---YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-----QVRLCDIASGAISQT--LSGHRDGIMTV 196 (446)
Q Consensus 127 ---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~-----~v~vwd~~~~~~~~~--l~~h~~~v~sv 196 (446)
++..+|..+.+....-++........... .+..+.+.|+.|+ +|..+|.++.+.... +......+-.+
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence 46777777665443333322111111111 2345677777665 388899888764322 22233333333
Q ss_pred EEecCCCeEEEEeeCCCc
Q 013274 197 EWSTSSEWILVTGGCDGA 214 (446)
Q Consensus 197 ~~s~~~~~~l~S~s~Dg~ 214 (446)
.. +++ +.+.|+.||.
T Consensus 520 ~~--~~~-ly~vGG~~~~ 534 (571)
T KOG4441|consen 520 VL--GGK-LYAVGGFDGN 534 (571)
T ss_pred EE--CCE-EEEEecccCc
Confidence 32 333 5678887653
No 396
>PHA02790 Kelch-like protein; Provisional
Probab=83.38 E-value=33 Score=34.47 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=51.0
Q ss_pred CCcEEEEEeCCC---eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee--eeeCC
Q 013274 115 DTGLFVTGSYDH---YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ--TLSGH 189 (446)
Q Consensus 115 ~~~~l~s~s~D~---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~--~l~~h 189 (446)
++.+.+.||.++ ++..||..+.+-...-.++-+....+... .++.+.+.|+ .+.+||.+++.... .+...
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCCCcEeEcCCCCCC
Confidence 677888888653 47788887665443222221111111111 1334566663 57889988775322 22222
Q ss_pred CCCeEEEEEecCCCeEEEEeeCC-----CcEEEEEccC
Q 013274 190 RDGIMTVEWSTSSEWILVTGGCD-----GAIRFWDIRR 222 (446)
Q Consensus 190 ~~~v~sv~~s~~~~~~l~S~s~D-----g~I~iWd~~~ 222 (446)
......+.+ +++ +.+.|+.+ .+|..||..+
T Consensus 437 r~~~~~~v~--~~~-IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 437 RDNPELIIV--DNK-LLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ccccEEEEE--CCE-EEEECCcCCCcccceEEEEECCC
Confidence 222223332 444 66777754 3466666554
No 397
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.51 E-value=32 Score=29.92 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=16.4
Q ss_pred ccccceEEEEEcCCC-CEEEEe
Q 013274 394 GHYEYVNCCCFSSQD-QELYTG 414 (446)
Q Consensus 394 gH~~~v~~~~fSpd~-~~lvtg 414 (446)
.|.+-.+.+|+-|++ ++++||
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccceeecCcCCeEEEec
Confidence 345567899999987 778888
No 398
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.46 E-value=13 Score=33.85 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=63.4
Q ss_pred EEccCCCEEEEeecC-----CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC--------------
Q 013274 316 KVTEDGMYLLSAGSD-----SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-------------- 376 (446)
Q Consensus 316 ~fs~dg~~l~sgs~D-----~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 376 (446)
.|||||.+|...-+| |.|-+||...+-+...++.+ ..-.+-.+...+|+.+++++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t---~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST---HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc---CCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence 499999998765444 67899998854333333322 12345567777888887776431
Q ss_pred -----ceEEEEeecCceE--EEec--ccccceEEEEEcCCCCEEEEeeC
Q 013274 377 -----AVKAFDIWSGKTC--LTFR--GHYEYVNCCCFSSQDQELYTGGN 416 (446)
Q Consensus 377 -----~~~~~d~~~~~~~--~~l~--gH~~~v~~~~fSpd~~~lvtgs~ 416 (446)
+..+.|..+|.++ ++|+ -|...|..++.-+||+.++-|-.
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 2344555566653 4565 56677888888899888876643
No 399
>PHA02790 Kelch-like protein; Provisional
Probab=82.32 E-value=58 Score=32.73 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=35.5
Q ss_pred CCcEEEEEeCC--CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC---CcEEEEeCCCCce
Q 013274 115 DTGLFVTGSYD--HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---VQVRLCDIASGAI 182 (446)
Q Consensus 115 ~~~~l~s~s~D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d---~~v~vwd~~~~~~ 182 (446)
++.+.+.||.+ .++..||..+.+....-+++......+... .++.+.+.|+.+ ..+..||.+++..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 67788888864 467888876654433222322221111111 133455666544 3577888877643
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.89 E-value=20 Score=31.70 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=52.5
Q ss_pred EEEEEeCCCeEEEEE--CCCCee-----eEEEecC---Cc--eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee
Q 013274 118 LFVTGSYDHYVKVWD--TNCTRV-----VMNFKMP---GK--VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT 185 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd--~~~~~~-----~~~~~~~---~~--~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~ 185 (446)
..++-+.+.+|.-|| ..+|.. +..+.-. ++ ...+++ +..+.+.++.-..+.|...|..+|+.+..
T Consensus 172 fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I---D~eG~L~Va~~ng~~V~~~dp~tGK~L~e 248 (310)
T KOG4499|consen 172 FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI---DTEGNLYVATFNGGTVQKVDPTTGKILLE 248 (310)
T ss_pred EEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE---ccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence 445667888898898 444432 2222210 00 001111 12345666667788999999999999999
Q ss_pred eeCCCCCeEEEEEecC
Q 013274 186 LSGHRDGIMTVEWSTS 201 (446)
Q Consensus 186 l~~h~~~v~sv~~s~~ 201 (446)
++=....|+|++|-..
T Consensus 249 iklPt~qitsccFgGk 264 (310)
T KOG4499|consen 249 IKLPTPQITSCCFGGK 264 (310)
T ss_pred EEcCCCceEEEEecCC
Confidence 8888999999999644
No 401
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=79.40 E-value=74 Score=32.08 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=63.2
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEecCCce-EE---eeeccCCC-CceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV-YR---TAMSPLAA-SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~-~~---~~~~~~~~-~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~ 191 (446)
..++.++.|+.+.-.|..+++.+-.+...... .. +...+... +...+..++.++.|+.+|.++|+.+........
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 46667778899999999999888766543220 00 00000011 113566777899999999999998877653322
Q ss_pred C-----e-EEEEEecCCCeEEEEee---------CCCcEEEEEccCCce
Q 013274 192 G-----I-MTVEWSTSSEWILVTGG---------CDGAIRFWDIRRAGC 225 (446)
Q Consensus 192 ~-----v-~sv~~s~~~~~~l~S~s---------~Dg~I~iWd~~~~~~ 225 (446)
. + .+..+. + ..+ +.++ .+|.+.-.|..+++.
T Consensus 142 ~~~~~~i~ssP~v~-~-~~v-~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 142 VPPGYTMTGAPTIV-K-KLV-IIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred cCcceEecCCCEEE-C-CEE-EEeccccccccCCCCcEEEEEECCCCce
Confidence 1 1 122232 2 223 3333 357778888877764
No 402
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.24 E-value=8.1 Score=39.56 Aligned_cols=39 Identities=21% Similarity=0.431 Sum_probs=27.9
Q ss_pred CeEEEEEec----CCCeEEEEeeCCCcEEEEEccCCceeEEeec
Q 013274 192 GIMTVEWST----SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231 (446)
Q Consensus 192 ~v~sv~~s~----~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~ 231 (446)
.+.+++++. +.. ++++-+.|+++|+||+.++.|++..+-
T Consensus 216 ~~~~~~~~~~~~~~~~-~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 216 VAASLAVSSSEINDDT-FLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp -EEEEEE-----ETTT-EEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred ccceEEEecceeCCCC-EEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 344555554 444 578999999999999999999777643
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=78.97 E-value=41 Score=34.75 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=63.7
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEec--CCceEEeeeccCCCCceEEEEeeCCCcEEEEeC-----CCC----ceee
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-----ASG----AISQ 184 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~-----~~~----~~~~ 184 (446)
++..+.-+.-.++.|||...+........ .+.+..+.+.....++.+++.|- .+.|.++-- ... ..++
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf-~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF-PHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc-CcEEEEEEccchhhhcCCcccceeE
Confidence 33444444457899999998876655444 67788888887666666666664 556666632 111 1233
Q ss_pred e--eeCCC-CCeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274 185 T--LSGHR-DGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (446)
Q Consensus 185 ~--l~~h~-~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~ 220 (446)
. +..|+ .+|....|.++|. |+.|+ .+.+.|+|-
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDK 155 (631)
T ss_pred EEEeecCCCCCccceeEecCCe--EEEEe-CCEEEEECC
Confidence 2 34555 6788999998875 33333 357888874
No 404
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=78.10 E-value=53 Score=29.73 Aligned_cols=106 Identities=13% Similarity=0.033 Sum_probs=54.7
Q ss_pred CeEEEEEccCCCEEEEee---cCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEE-eec
Q 013274 311 AVTGLKVTEDGMYLLSAG---SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFD-IWS 385 (446)
Q Consensus 311 ~v~~l~fs~dg~~l~sgs---~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d-~~~ 385 (446)
.+.+.++++||..++.-. ....|.++......... . .........+.+++.+.++.... ..+++. ..+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--~-----~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--L-----TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--c-----cCCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 477788999998765444 33345555433221111 0 11122334566666665554433 334442 223
Q ss_pred CceEE-Ee--cccccceEEEEEcCCCCEEEEee---CCCcEEEe
Q 013274 386 GKTCL-TF--RGHYEYVNCCCFSSQDQELYTGG---NDRQILVW 423 (446)
Q Consensus 386 ~~~~~-~l--~gH~~~v~~~~fSpd~~~lvtgs---~D~~v~vW 423 (446)
++... .. ..-.+.|+.+++||||.+++--. .++.|.|=
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVA 141 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence 33221 11 11112899999999999987544 34555544
No 405
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.98 E-value=48 Score=35.42 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=68.1
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceE---------EeeeccC-------------CCCceEEEEeeCCCcEE
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY---------RTAMSPL-------------AASHMLIAAGTEDVQVR 173 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~~~lasgs~d~~v~ 173 (446)
++.++.++.++.|.-.|.++++.+-++....... .+++... ......+..++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4477778888999999999999887776432211 1111110 01223567788899999
Q ss_pred EEeCCCCceeeeeeCCCCCe----------------EE-EEEecCCCeEEEEeeC----------CCcEEEEEccCCcee
Q 013274 174 LCDIASGAISQTLSGHRDGI----------------MT-VEWSTSSEWILVTGGC----------DGAIRFWDIRRAGCF 226 (446)
Q Consensus 174 vwd~~~~~~~~~l~~h~~~v----------------~s-v~~s~~~~~~l~S~s~----------Dg~I~iWd~~~~~~~ 226 (446)
-.|.++|+....+.. .+.| ++ -.+. ++ . ++.|+. +|.|+-+|.++++.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g-~-VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVA-GT-T-VVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEE-CC-E-EEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999998876532 1211 11 1111 22 3 344532 688999999998865
Q ss_pred EEe
Q 013274 227 RVL 229 (446)
Q Consensus 227 ~~~ 229 (446)
=.+
T Consensus 350 W~~ 352 (764)
T TIGR03074 350 WAW 352 (764)
T ss_pred eEE
Confidence 443
No 406
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=77.20 E-value=54 Score=32.53 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=57.9
Q ss_pred CeEEEEEccCCCEEEEeecCCcEEEEecCcCceeee-eeeEEE--eecCCCeEEEEcCCC------cEEEEeC-------
Q 013274 311 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV-NFETVR--LQTSKPIQLATTQDP------AVVFVPC------- 374 (446)
Q Consensus 311 ~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~------- 374 (446)
.-+.|+|.|||.+|++--..|+|++++..++..... .+.... .......-+++.|+- ..+++..
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 367899999999888766579999998665432211 111111 113445667777764 2344331
Q ss_pred ----CCceEEEEeecC-------c-eEEEe---cccccceEEEEEcCCCCEEEEeeCC
Q 013274 375 ----MTAVKAFDIWSG-------K-TCLTF---RGHYEYVNCCCFSSQDQELYTGGND 417 (446)
Q Consensus 375 ----~~~~~~~d~~~~-------~-~~~~l---~gH~~~v~~~~fSpd~~~lvtgs~D 417 (446)
...+.-+.+... + ++..+ ..|.+ -.|+|.|||.+.++.++-
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEECCC
Confidence 122333443211 1 11122 13554 378899999988865543
No 407
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=75.27 E-value=85 Score=30.65 Aligned_cols=107 Identities=9% Similarity=0.124 Sum_probs=60.4
Q ss_pred ecCCcEEE-EEeCC----CeEEEEECCCCeeeEEEecCCceE-EeeeccCCCCceEEEEeeC----------CCcEEEEe
Q 013274 113 PVDTGLFV-TGSYD----HYVKVWDTNCTRVVMNFKMPGKVY-RTAMSPLAASHMLIAAGTE----------DVQVRLCD 176 (446)
Q Consensus 113 ~~~~~~l~-s~s~D----~~i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lasgs~----------d~~v~vwd 176 (446)
+++++++| +-+.. .++++.|+++++.+... +..... .+.|.+++. .++.+... ...|+.|.
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~--~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPKFSSVSWSDDGK--GFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEESEEEEECTTSS--EEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccccceEEEeCCCC--EEEEEEeCcccccccCCCCcEEEEEE
Confidence 34777765 33443 45999999999766432 111112 266666432 34444322 23478888
Q ss_pred CCCCce--eeeeeCCCCC--eEEEEEecCCCeEEEEeeCCC---cEEEEEccC
Q 013274 177 IASGAI--SQTLSGHRDG--IMTVEWSTSSEWILVTGGCDG---AIRFWDIRR 222 (446)
Q Consensus 177 ~~~~~~--~~~l~~h~~~--v~sv~~s~~~~~~l~S~s~Dg---~I~iWd~~~ 222 (446)
+-++.. ...+...... ...+..++++++++++..... .+.+-|+..
T Consensus 209 ~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 209 LGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp TTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred CCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 877642 2344443333 567889999998877665444 366666654
No 408
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=75.11 E-value=38 Score=32.14 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=52.1
Q ss_pred eEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE----eecCCCeEEEEcCC---CcEEEEeCC---------
Q 013274 312 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR----LQTSKPIQLATTQD---PAVVFVPCM--------- 375 (446)
Q Consensus 312 v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~--------- 375 (446)
.++|+|.|||..+++ ...|+|++++ ..+.. ...+.... .......-+++.|+ ...+++...
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~-~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSL-KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEE-CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcC-cceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 578999999988875 5699999998 33322 01111110 01123345677663 123333211
Q ss_pred -CceEEEEeecC-------c-eEEEecc-----cccceEEEEEcCCCCEEEEeeCCCc
Q 013274 376 -TAVKAFDIWSG-------K-TCLTFRG-----HYEYVNCCCFSSQDQELYTGGNDRQ 419 (446)
Q Consensus 376 -~~~~~~d~~~~-------~-~~~~l~g-----H~~~v~~~~fSpd~~~lvtgs~D~~ 419 (446)
..+.-|.+..+ + ++..+.. |. ...|+|.|||.+.++.+..+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~--g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHN--GGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS---EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCC--CccccCCCCCcEEEEeCCCCC
Confidence 12333444333 1 1222232 43 356999999988887665543
No 409
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.77 E-value=10 Score=22.95 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=23.6
Q ss_pred cCCCeEEEEeeCCCcEEEEEccCCceeEEee
Q 013274 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (446)
Q Consensus 200 ~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~ 230 (446)
|++++++++...+++|.++|..++..+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5677777777778999999998776655553
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.53 E-value=69 Score=33.95 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=28.2
Q ss_pred ccCeEEEEEccCC---CEEEEeecCCcEEEEecCcCc
Q 013274 309 YGAVTGLKVTEDG---MYLLSAGSDSRIRLWDVESGR 342 (446)
Q Consensus 309 ~~~v~~l~fs~dg---~~l~sgs~D~~i~lWd~~~~~ 342 (446)
...|..+.|+|.+ ..|+.-..|+++|+||+...+
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 3468999999874 788888999999999998644
No 411
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.24 E-value=16 Score=21.94 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=20.8
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEecC
Q 013274 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMP 145 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~ 145 (446)
++++.-.+++|.++|+.+++.+..+...
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 4455556889999999888877776653
No 412
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=74.15 E-value=19 Score=36.62 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=41.1
Q ss_pred CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG 188 (446)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~ 188 (446)
+.|.-+|+.+++.+-.++.......-.+. ....++..+..++.++.+|.++|+.+..++-
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~---t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLA---TAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceE---ECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 56888899999887766644322111111 1223666788899999999999998887754
No 413
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=73.32 E-value=10 Score=20.93 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274 398 YVNCCCFSSQDQELYTGGNDRQILVW 423 (446)
Q Consensus 398 ~v~~~~fSpd~~~lvtgs~D~~v~vW 423 (446)
....++++++|+.+++-+..+.|+++
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 45788999999999998888888764
No 414
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=71.82 E-value=77 Score=28.62 Aligned_cols=117 Identities=10% Similarity=0.133 Sum_probs=68.1
Q ss_pred cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc--eEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (446)
Q Consensus 100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lasgs~d~~v~vwd~ 177 (446)
.+-...+..+.+.|.++.++++....+.|...++ +|++++.+.+.+. ...+++.. +..++++.-.++.+.++++
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g---~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG---NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S---TTEEEEEETTTTEEEEEEE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC---CCEEEEEEcCCCcEEEEEE
Confidence 3445568888888866778888888899988887 4788888877653 44555543 2334444445788999988
Q ss_pred CCCc------eeeee-----eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274 178 ASGA------ISQTL-----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 178 ~~~~------~~~~l-----~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~ 221 (446)
.... ....+ ..++..+-.++|+|.++.++ .+-+..-.+||.++
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVN 147 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEE
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEc
Confidence 4321 11112 13566789999999877654 45555556666554
No 415
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=71.70 E-value=24 Score=34.89 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=48.2
Q ss_pred eEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 161 ~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~ 221 (446)
-++|.++.-|.|++||--.-.....+++-...|..|..+.+|+++|+||- ..+.+=|++
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence 47899999999999997555555677888899999999999999877653 578888875
No 416
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=71.53 E-value=51 Score=26.46 Aligned_cols=124 Identities=12% Similarity=0.149 Sum_probs=65.4
Q ss_pred EEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec----CCcEEEEEeC
Q 013274 49 LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV----DTGLFVTGSY 124 (446)
Q Consensus 49 l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~----~~~~l~s~s~ 124 (446)
-+|+.. ..-|+.+..-|+|.|.+......... . ....+.++ --...|+++..-+. +.+.|+.|+.
T Consensus 4 GkfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~--~--~~~~i~~L------Nin~~italaaG~l~~~~~~D~LliGt~ 72 (136)
T PF14781_consen 4 GKFDGV-HPCLACATTGGKVFIHNPHERGQRTG--R--QDSDISFL------NINQEITALAAGRLKPDDGRDCLLIGTQ 72 (136)
T ss_pred EEeCCC-ceeEEEEecCCEEEEECCCccccccc--c--ccCceeEE------ECCCceEEEEEEecCCCCCcCEEEEecc
Confidence 345432 34577778888899998654321100 0 11111111 11234566655442 3456666654
Q ss_pred CCeEEEEECCCCeeeEEEecCCceEEeeeccCCC-CceEEEEeeCCCcEEEEeCCCCceeee
Q 013274 125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAA-SHMLIAAGTEDVQVRLCDIASGAISQT 185 (446)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lasgs~d~~v~vwd~~~~~~~~~ 185 (446)
.++..||++...-+.....+..++.+.+..... ...+++.| -+.+|.=||.+..+..++
T Consensus 73 -t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 73 -TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred -ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 589999998776665555566666666654433 23344444 345666666554444433
No 417
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=70.89 E-value=82 Score=33.72 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=47.7
Q ss_pred CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceE-------------EeeeccCCCCceEEEEeeC----------CCcE
Q 013274 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY-------------RTAMSPLAASHMLIAAGTE----------DVQV 172 (446)
Q Consensus 116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~lasgs~----------d~~v 172 (446)
...++.++.|+.+.-.|.++|+.+..+...+.+. .....|.-.+. .++.|+. ++.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEE
Confidence 4477888889999999999999887776544331 11222222223 3444432 6889
Q ss_pred EEEeCCCCceeeeee
Q 013274 173 RLCDIASGAISQTLS 187 (446)
Q Consensus 173 ~vwd~~~~~~~~~l~ 187 (446)
+-+|+++|+.+..+.
T Consensus 339 ~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 339 RAFDVNTGALVWAWD 353 (764)
T ss_pred EEEECCCCcEeeEEe
Confidence 999999999887764
No 418
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=70.58 E-value=11 Score=38.67 Aligned_cols=30 Identities=20% Similarity=0.475 Sum_probs=25.9
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeeeEEEec
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM 144 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~ 144 (446)
+..++++.+.|+++|+||+.+++++....+
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 567899999999999999999999776644
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=70.34 E-value=1.2e+02 Score=30.86 Aligned_cols=120 Identities=18% Similarity=0.309 Sum_probs=62.6
Q ss_pred cccccCeEEEEEccCC----CEEEEeecCCcEEEEecCc---CceeeeeeeEEEeecC---CCeEEEEcCCCcEEEEeCC
Q 013274 306 TAHYGAVTGLKVTEDG----MYLLSAGSDSRIRLWDVES---GRNTLVNFETVRLQTS---KPIQLATTQDPAVVFVPCM 375 (446)
Q Consensus 306 ~~h~~~v~~l~fs~dg----~~l~sgs~D~~i~lWd~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 375 (446)
.|.+..|..+.|.|-+ ..|++---...|.+|-+.- .+.+...-.+-..... -+.-....|...++.+-+.
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 3455568999999864 2455556788899998762 1111111111111111 1112334555555554333
Q ss_pred Cce-EEEEe--ecCceEEEecccccceEEEEEcCCCCEEEEe-eCCCcEEEeCCC
Q 013274 376 TAV-KAFDI--WSGKTCLTFRGHYEYVNCCCFSSQDQELYTG-GNDRQILVWCPS 426 (446)
Q Consensus 376 ~~~-~~~d~--~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtg-s~D~~v~vW~~~ 426 (446)
..+ .+.++ .+......+ .-.+.|.|.+|++||++||-+ +.-=.-.|||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 222 23333 222233334 345779999999999998743 322335677654
No 420
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.92 E-value=23 Score=34.46 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=28.5
Q ss_pred ccCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274 309 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 339 (446)
Q Consensus 309 ~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~ 339 (446)
.|+|.++.||+|.+.||.--.|.+|.+++..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~ 96 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFI 96 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecC
Confidence 4689999999999999999999999999974
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=68.57 E-value=44 Score=32.73 Aligned_cols=83 Identities=12% Similarity=-0.004 Sum_probs=50.1
Q ss_pred ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC--CceEEeeeccCC---------------CCceEEEEe
Q 013274 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLA---------------ASHMLIAAG 166 (446)
Q Consensus 104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~---------------~~~~~lasg 166 (446)
-.+.++...| ++.+.|....=|.|.++|+.++..++-++.- ..+..+...... ....+++.+
T Consensus 308 R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 3455666666 5667676655599999999988776655421 111111111110 012345566
Q ss_pred eCCCcEEEEeCCCCceeeeee
Q 013274 167 TEDVQVRLCDIASGAISQTLS 187 (446)
Q Consensus 167 s~d~~v~vwd~~~~~~~~~l~ 187 (446)
-..|.|.||++++|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 778999999999887665543
No 422
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=66.86 E-value=1e+02 Score=28.01 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=36.7
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA 181 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~ 181 (446)
.++.|+.|..+| +.++++..............+..+...+... .+++- .|+.++++++..-.
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~--~llvL--sd~~l~~~~L~~l~ 67 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELN--LLLVL--SDGQLYVYDLDSLE 67 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccC--EEEEE--cCCccEEEEchhhc
Confidence 467888888888 8999883332222222222366666655321 23333 36899999987543
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.72 E-value=60 Score=34.40 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=53.5
Q ss_pred cceeEEEeecCCCCEEEEeeCCCcEEEEEcc-cC---cCCCCCCccccccceEEeccccccCccccEeEEEEeec--CCc
Q 013274 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQ-RA---TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV--DTG 117 (446)
Q Consensus 44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~--~~~ 117 (446)
-.|..|.+++ .|++|+-.|..|-+.+ .+- +. ..++.+.....-+.+.+........+...|..+.|+|. ++.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4788889987 5777777777664443 342 11 11111100001111222222223356678999999985 357
Q ss_pred EEEEEeCCCeEEEEECCCC
Q 013274 118 LFVTGSYDHYVKVWDTNCT 136 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~~ 136 (446)
.|+.-..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8888889999999998653
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.47 E-value=45 Score=29.44 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeeeE
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRVVM 140 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~~~ 140 (446)
++.+|+.-..+|.+.+||+.+++.+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeecc
Confidence 67789999999999999999877654
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=64.97 E-value=1.1e+02 Score=31.88 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=39.6
Q ss_pred CCCceEEEEeecCceE--EEecccccceEEEEEc--CCCCEEEEeeCCCcEEEeCC
Q 013274 374 CMTAVKAFDIWSGKTC--LTFRGHYEYVNCCCFS--SQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 374 ~~~~~~~~d~~~~~~~--~~l~gH~~~v~~~~fS--pd~~~lvtgs~D~~v~vW~~ 425 (446)
....+.+||...+.+- .+| ...+.|.++.|+ ||++.+++.|-.+.|.++.-
T Consensus 49 ~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 49 SRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 3467899999777642 244 456778888876 89999999999999999954
No 426
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=64.62 E-value=55 Score=27.60 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=25.5
Q ss_pred cceEEEEEcCCC------CEEEEeeCCCcEEEeCCCC
Q 013274 397 EYVNCCCFSSQD------QELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 397 ~~v~~~~fSpd~------~~lvtgs~D~~v~vW~~~~ 427 (446)
..|-.++|||-| -+|+....++.|.||.+..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999943 4588899999999998764
No 427
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=64.38 E-value=18 Score=21.57 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.9
Q ss_pred EEEeeCCCcEEEEeCCCCceeeeee
Q 013274 163 IAAGTEDVQVRLCDIASGAISQTLS 187 (446)
Q Consensus 163 lasgs~d~~v~vwd~~~~~~~~~l~ 187 (446)
+..++.++.|+..|.++|+.+..+.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEeee
Confidence 4455889999999999999888765
No 428
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.18 E-value=1.2e+02 Score=28.13 Aligned_cols=117 Identities=11% Similarity=0.152 Sum_probs=67.6
Q ss_pred ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCce--EEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (446)
Q Consensus 99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lasgs~d~~v~vwd 176 (446)
..|-...|.++.++|.+ ..|.+........||=...|++++++++.+-. ..+.+.. ++.++++--.+..+.++-
T Consensus 81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig---~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG---GNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec---CCEEEEEehhcceEEEEE
Confidence 34555668888888854 45555555566677766778999988876521 1222221 233444444566677776
Q ss_pred CCCCceee-------eee--CC-CCCeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274 177 IASGAISQ-------TLS--GH-RDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (446)
Q Consensus 177 ~~~~~~~~-------~l~--~h-~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~ 220 (446)
++.+.... .|. .+ +...-.++|+|.++.+ .-+=+-.=|+|+-.
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l-~~aKEr~P~~I~~~ 209 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRL-FVAKERNPIGIFEV 209 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceE-EEEEccCCcEEEEE
Confidence 65442111 111 12 5667788998887764 44555455666644
No 429
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=63.01 E-value=17 Score=20.53 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=19.8
Q ss_pred EEEEeeCCCcEEEEeCCCCceeeee
Q 013274 162 LIAAGTEDVQVRLCDIASGAISQTL 186 (446)
Q Consensus 162 ~lasgs~d~~v~vwd~~~~~~~~~l 186 (446)
.+..++.++.+..+|.++|+....+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 4666778999999999998876653
No 430
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=61.42 E-value=1.4e+02 Score=27.64 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=51.9
Q ss_pred cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe------CCCeEEEEECCCCeeeE
Q 013274 67 SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS------YDHYVKVWDTNCTRVVM 140 (446)
Q Consensus 67 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s------~D~~i~iWd~~~~~~~~ 140 (446)
.|.+||.++.+..... .+-.+.|.++.|.. +.++++.|. ....+-.||+.+.....
T Consensus 17 ~lC~yd~~~~qW~~~g-----------------~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPG-----------------NGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred EEEEEECCCCEeecCC-----------------CCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeee
Confidence 5899998765543211 23456788888874 455666664 46778899988765422
Q ss_pred EE-----ecCCceEEeeeccCCCCceEEEEee-CCC--cEEEEeC
Q 013274 141 NF-----KMPGKVYRTAMSPLAASHMLIAAGT-EDV--QVRLCDI 177 (446)
Q Consensus 141 ~~-----~~~~~~~~~~~~~~~~~~~~lasgs-~d~--~v~vwd~ 177 (446)
.- .+++++..+.+...+.+ .+.++|. .++ .|..||=
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~-~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGS-NFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCc-eEEEeceecCCCceEEEEcC
Confidence 11 13466655555443333 2444443 333 4556653
No 431
>PRK13684 Ycf48-like protein; Provisional
Probab=60.63 E-value=1.3e+02 Score=28.61 Aligned_cols=107 Identities=10% Similarity=0.085 Sum_probs=51.1
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceE
Q 013274 310 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTC 389 (446)
Q Consensus 310 ~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 389 (446)
+.+..+.+.|++.+++.|......+.+|-.. ........ ........+.+.+++..++++....+..-.-..++.-
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg--~tW~~~~~--~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQ--TAWTPHQR--NSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESW 248 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEEcCCCC--CeEEEeeC--CCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCcc
Confidence 4578889999998877665433233332211 11111100 0012233455666666665554333221112222221
Q ss_pred EEec----ccccceEEEEEcCCCCEEEEeeCCCcEE
Q 013274 390 LTFR----GHYEYVNCCCFSSQDQELYTGGNDRQIL 421 (446)
Q Consensus 390 ~~l~----gH~~~v~~~~fSpd~~~lvtgs~D~~v~ 421 (446)
.... .-...+..++|.|+++.++.| .++.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 1111 112357889999988766544 556544
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.88 E-value=1.7e+02 Score=32.33 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=25.6
Q ss_pred CeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274 311 AVTGLKVTEDGMYLLSAGSDSRIRLWDVE 339 (446)
Q Consensus 311 ~v~~l~fs~dg~~l~sgs~D~~i~lWd~~ 339 (446)
..++++|+|.|+.++.|-..|++.-|...
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecc
Confidence 47999999999999999999999888644
No 433
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.86 E-value=1.2e+02 Score=34.00 Aligned_cols=34 Identities=6% Similarity=0.046 Sum_probs=30.0
Q ss_pred ccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 394 GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 394 gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
+|.++|..+++-..-+.|.+=+.-++|++|++.+
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 6788999999987778899999999999999875
No 434
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=57.49 E-value=66 Score=23.60 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=25.4
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~ 221 (446)
.-..|.++|+++.+.++....+.|.+|..+
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 346788999999988888889999999764
No 435
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=56.99 E-value=2.3e+02 Score=29.89 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=72.2
Q ss_pred CCCccceeEEEee-cCCCCEEEEeeCCCcEEEEEcccCcC----C----CCCCccccccceEEeccccccCccccEeEEE
Q 013274 40 SPHKGSINSLQVD-LTEERYLLSGASDSSVAVYDVQRATD----Y----EGGGHIAKHRSVFVVDKQHEHGHKYAISSAI 110 (446)
Q Consensus 40 ~~H~~~v~~l~~s-~~~~~~l~s~s~Dg~i~lWd~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~ 110 (446)
.+|+ ||-|... .-+...|+.+..||.|.+|.+++-.. . +........++.+.. -....+++++
T Consensus 99 ~PHt--IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~------~v~~SaWGLd 170 (717)
T PF08728_consen 99 FPHT--INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL------RVGASAWGLD 170 (717)
T ss_pred CCce--eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe------ecCCceeEEE
Confidence 4554 7777653 22457899999999999998643210 0 000000111121111 1233678888
Q ss_pred Eeec-CCcEEEEEeCCCeEEEEECCCC--ee-e-EEEecCCceEEeeeccCCCCc---eEEEEeeCCCcEEEEeC
Q 013274 111 WYPV-DTGLFVTGSYDHYVKVWDTNCT--RV-V-MNFKMPGKVYRTAMSPLAASH---MLIAAGTEDVQVRLCDI 177 (446)
Q Consensus 111 ~~~~-~~~~l~s~s~D~~i~iWd~~~~--~~-~-~~~~~~~~~~~~~~~~~~~~~---~~lasgs~d~~v~vwd~ 177 (446)
++.. ...++|.++.-..|.||-.... +. . ...+....+-+++|.+...+. ..+++++-.|.+.+|++
T Consensus 171 Ih~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 171 IHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8732 3446666666677777754321 11 1 111233345567776655332 37888888999988887
No 436
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=55.24 E-value=1.6e+02 Score=26.39 Aligned_cols=98 Identities=14% Similarity=0.244 Sum_probs=58.7
Q ss_pred eEEEeecCCCCEEEEeeCCCcEEEEE--cccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274 47 NSLQVDLTEERYLLSGASDSSVAVYD--VQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (446)
Q Consensus 47 ~~l~~s~~~~~~l~s~s~Dg~i~lWd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~ 124 (446)
|.|+|+.+.-.+-..-|.+-+|.-|| +.++... ..+.++.+.+..-.+|..+ .......+|.+++++=.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s-------nr~~i~dlrk~~~~e~~~P--DGm~ID~eG~L~Va~~n 231 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS-------NRKVIFDLRKSQPFESLEP--DGMTIDTEGNLYVATFN 231 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCccccc-------CcceeEEeccCCCcCCCCC--CcceEccCCcEEEEEec
Confidence 56778754445667778888898887 6665432 2333333333211112111 11112346777777777
Q ss_pred CCeEEEEECCCCeeeEEEecCCc-eEEeee
Q 013274 125 DHYVKVWDTNCTRVVMNFKMPGK-VYRTAM 153 (446)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~ 153 (446)
-++|...|..+|+.+..+.++-. +.+++|
T Consensus 232 g~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 232 GGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred CcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 78999999999999988887632 344444
No 437
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=53.70 E-value=1.6e+02 Score=28.91 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=51.1
Q ss_pred eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE-EEE-ecC----------------CCeEEEEe
Q 013274 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT-VEW-STS----------------SEWILVTG 209 (446)
Q Consensus 148 ~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s-v~~-s~~----------------~~~~l~S~ 209 (446)
..++..+|. +.+.|+...=|.|.++|+.++..++..+|-.+.-.+ +.. .+. ...+++-+
T Consensus 310 ~~~i~~sP~---~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 310 GESICLSPS---GRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred EEEEEECCC---CCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 344555553 446666555578999999999887777776554222 111 111 11244556
Q ss_pred eCCCcEEEEEccCCceeEEee
Q 013274 210 GCDGAIRFWDIRRAGCFRVLD 230 (446)
Q Consensus 210 s~Dg~I~iWd~~~~~~~~~~~ 230 (446)
-.-|.|-+|+++++..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 778999999999988776654
No 438
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=53.15 E-value=2.2e+02 Score=27.41 Aligned_cols=28 Identities=7% Similarity=0.082 Sum_probs=18.8
Q ss_pred EEecccccceEEEEEcCCCCEEEEeeCC
Q 013274 390 LTFRGHYEYVNCCCFSSQDQELYTGGND 417 (446)
Q Consensus 390 ~~l~gH~~~v~~~~fSpd~~~lvtgs~D 417 (446)
..+..-....+.++|+|+|++++|-..+
T Consensus 177 e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 177 RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEEecCcCCCccceECCCCCEEEEccCC
Confidence 3333333456899999999998875433
No 439
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.93 E-value=2.3e+02 Score=29.90 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=34.4
Q ss_pred CcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274 170 VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (446)
Q Consensus 170 ~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~ 221 (446)
-.|+|+++. |.++..+.-..+.+-.+.|+.+.. |+.-..||++.+|++-
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE--LICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCce--EEEEeccceEEEeecc
Confidence 358888874 444444433334788999997654 5778899999999974
No 440
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=50.42 E-value=1.3e+02 Score=24.17 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=58.0
Q ss_pred EEEEEeCCCeEEEEECCC--------CeeeEEEecCCceEEeeeccCC--CCceEEEEeeCCCcEEEEeCCCCceeeeee
Q 013274 118 LFVTGSYDHYVKVWDTNC--------TRVVMNFKMPGKVYRTAMSPLA--ASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (446)
Q Consensus 118 ~l~s~s~D~~i~iWd~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~lasgs~d~~v~vwd~~~~~~~~~l~ 187 (446)
-|+.+..-++|.|.+... ...+..+.+...+.+++..++. .....|+.|+. ..+..||++.+.-+..-.
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke 90 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKE 90 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhh
Confidence 345555556777777542 2234555566666666665553 33456777764 579999998875443222
Q ss_pred CCCCCeEEEEEecC---CCeEEEEeeCCCcEEEEEccC
Q 013274 188 GHRDGIMTVEWSTS---SEWILVTGGCDGAIRFWDIRR 222 (446)
Q Consensus 188 ~h~~~v~sv~~s~~---~~~~l~S~s~Dg~I~iWd~~~ 222 (446)
-.+.|.++.+-.- ...+++.| .+..|.-+|...
T Consensus 91 -~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G 126 (136)
T PF14781_consen 91 -VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEG 126 (136)
T ss_pred -CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCC
Confidence 2366777765221 12233444 356677777543
No 441
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=48.69 E-value=47 Score=34.55 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.0
Q ss_pred eEEEEEccCCCEEEEeecCCcEEEEecCcCc
Q 013274 312 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 342 (446)
Q Consensus 312 v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~ 342 (446)
++++.-+|.|+.++++..||.|++|+....+
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 6777788999999999999999999987543
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=48.34 E-value=3e+02 Score=27.68 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=58.3
Q ss_pred EEEeecCCcEE-EEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCC----ceEEEEeeCCCcEEEEeCCCC-ce
Q 013274 109 AIWYPVDTGLF-VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS----HMLIAAGTEDVQVRLCDIASG-AI 182 (446)
Q Consensus 109 ~~~~~~~~~~l-~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~lasgs~d~~v~vwd~~~~-~~ 182 (446)
+..+..+..++ ..|+.-..+.--|++.|+++..+.....+ -+.+.|.... ...-+.|-++..|.-.|.+-. ..
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK 550 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK 550 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence 44554455554 45566666777788888888777765544 3444443211 112345556677776676532 22
Q ss_pred ee--e---eeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274 183 SQ--T---LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (446)
Q Consensus 183 ~~--~---l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd 219 (446)
+. . +.+.. .-.+..-. .+.+ ++.+|.-|.||+||
T Consensus 551 i~v~esKdY~tKn-~Fss~~tT-esGy-Ia~as~kGDirLyD 589 (776)
T COG5167 551 IKVVESKDYKTKN-KFSSGMTT-ESGY-IAAASRKGDIRLYD 589 (776)
T ss_pred eeeeeehhccccc-cccccccc-cCce-EEEecCCCceeeeh
Confidence 21 1 11111 12222222 2334 68899999999998
No 443
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=48.07 E-value=2.3e+02 Score=26.19 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=26.9
Q ss_pred CCccceeEEEeecCCCCEEEEee------CCCcEEEEEcccCc
Q 013274 41 PHKGSINSLQVDLTEERYLLSGA------SDSSVAVYDVQRAT 77 (446)
Q Consensus 41 ~H~~~v~~l~~s~~~~~~l~s~s------~Dg~i~lWd~~~~~ 77 (446)
+-+|.|++|.|. ++..++|.|. ....+..||.++.+
T Consensus 34 ~i~G~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 34 GISGTVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CceEEEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 456899999996 4567777775 45578899987654
No 444
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=47.92 E-value=2.8e+02 Score=27.20 Aligned_cols=31 Identities=10% Similarity=0.273 Sum_probs=26.5
Q ss_pred ccCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274 309 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 339 (446)
Q Consensus 309 ~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~ 339 (446)
.+++..|++||+|++||--..+|.+.+....
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 3579999999999999988999999888644
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=47.68 E-value=6.5 Score=41.37 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=19.7
Q ss_pred EcCCCCEEEEeeCCCcEEEeCC
Q 013274 404 FSSQDQELYTGGNDRQILVWCP 425 (446)
Q Consensus 404 fSpd~~~lvtgs~D~~v~vW~~ 425 (446)
.||||+.||+++.||.++.|.+
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eCCCCcEEEEeecCCccceeee
Confidence 6999999999999999998855
No 446
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.93 E-value=77 Score=34.84 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=31.1
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCC
Q 013274 396 YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 431 (446)
Q Consensus 396 ~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~ 431 (446)
...++|++|||-|+.|+-|-..|++.-+.|......
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~ 233 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS 233 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeecccceee
Confidence 456799999999999999999999999998866433
No 447
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.69 E-value=2.6e+02 Score=31.46 Aligned_cols=34 Identities=6% Similarity=0.207 Sum_probs=29.5
Q ss_pred ccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274 307 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 307 ~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~ 340 (446)
.+..+|..+.....-..|.+-+..++|..||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4556899999988888888999999999999986
No 448
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=45.84 E-value=1.8e+02 Score=25.55 Aligned_cols=102 Identities=10% Similarity=0.088 Sum_probs=59.6
Q ss_pred CCcEEEEEeCC--CeEEEEECCCCeeeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274 115 DTGLFVTGSYD--HYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (446)
Q Consensus 115 ~~~~l~s~s~D--~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~ 191 (446)
++.++.|.+.- ..|++||+.+++.+..-++.. .++.-..... +...-+-.-.++....+|.++-+++.++. .++
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 45666666653 469999999999887665541 2211111111 11223334678888999998877766654 345
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~ 222 (446)
.-+.++- +++.+ +.+....+++.-|..+
T Consensus 132 eGWgLt~--d~~~L-imsdGsatL~frdP~t 159 (262)
T COG3823 132 EGWGLTS--DDKNL-IMSDGSATLQFRDPKT 159 (262)
T ss_pred cceeeec--CCcce-EeeCCceEEEecCHHH
Confidence 5566664 44554 4444445666666544
No 449
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=43.15 E-value=4.9e+02 Score=28.59 Aligned_cols=56 Identities=11% Similarity=0.145 Sum_probs=34.2
Q ss_pred EEEEeeCCCcEEEEeCCCCceeeeee--CCCCCeEEEEEecC--CCe---EEEEeeCCCcEEEE
Q 013274 162 LIAAGTEDVQVRLCDIASGAISQTLS--GHRDGIMTVEWSTS--SEW---ILVTGGCDGAIRFW 218 (446)
Q Consensus 162 ~lasgs~d~~v~vwd~~~~~~~~~l~--~h~~~v~sv~~s~~--~~~---~l~S~s~Dg~I~iW 218 (446)
.++.++.++.+...++..+.+ +... .-...|.|+.++|- ++. +++.|.|+..+.+-
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l-~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l 563 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGL-REVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL 563 (1096)
T ss_pred EEEEecCccEEEEEEeeccce-eeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEE
Confidence 455555566777777776652 2222 23567889988865 333 67777776665544
No 450
>PRK13616 lipoprotein LpqB; Provisional
Probab=41.51 E-value=4.3e+02 Score=27.48 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=52.0
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEEE---EecCcCceeeeeeeEEEeecCC-CeEEEEcCCCcEEEEeCCCceEEEEee-
Q 013274 310 GAVTGLKVTEDGMYLLSAGSDSRIRL---WDVESGRNTLVNFETVRLQTSK-PIQLATTQDPAVVFVPCMTAVKAFDIW- 384 (446)
Q Consensus 310 ~~v~~l~fs~dg~~l~sgs~D~~i~l---Wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~- 384 (446)
+.|..+.|||||+.|+-.. +++|.+ -....+...+.....+...... +..+....++.+++........+|.+.
T Consensus 448 g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 448 GPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNL 526 (591)
T ss_pred CCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEec
Confidence 4599999999999877654 566766 3323333222111112111112 344556666665543332333344442
Q ss_pred cCceEEEecc--cccceEEEEEcCCCCEEEEeeCCC
Q 013274 385 SGKTCLTFRG--HYEYVNCCCFSSQDQELYTGGNDR 418 (446)
Q Consensus 385 ~~~~~~~l~g--H~~~v~~~~fSpd~~~lvtgs~D~ 418 (446)
+|.....+.+ ....+..++=+++ . ++-...++
T Consensus 527 DG~~~~~~~~~n~~~~v~~vaa~~~-~-iyv~~~~g 560 (591)
T PRK13616 527 DGSNSDALPSRNLSAPVVAVAASPS-T-VYVTDARA 560 (591)
T ss_pred CCccccccCCCCccCceEEEecCCc-e-EEEEcCCc
Confidence 2333222233 2566777776653 3 33334444
No 451
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=41.09 E-value=4.2e+02 Score=27.26 Aligned_cols=113 Identities=15% Similarity=0.204 Sum_probs=59.7
Q ss_pred cEeEEEEeec---CCcEEEEEeCCCeEEEEECC-----CCeeeEEEec--CC--c--eEEeeeccCCCCceEEEEeeCCC
Q 013274 105 AISSAIWYPV---DTGLFVTGSYDHYVKVWDTN-----CTRVVMNFKM--PG--K--VYRTAMSPLAASHMLIAAGTEDV 170 (446)
Q Consensus 105 ~V~~~~~~~~---~~~~l~s~s~D~~i~iWd~~-----~~~~~~~~~~--~~--~--~~~~~~~~~~~~~~~lasgs~d~ 170 (446)
-|..+.|.|. +...++.....+.|-||-+- ..+.+....+ .. + .....|+|- ..+|+.=..+.
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk---~~iL~VLT~~d 134 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK---KAILTVLTARD 134 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC---CceEEEEecCc
Confidence 3556677664 23356666777899999864 2232222111 10 0 112234442 22333322222
Q ss_pred cEEEEeCCCC-ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274 171 QVRLCDIASG-AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (446)
Q Consensus 171 ~v~vwd~~~~-~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~ 220 (446)
.=-++++... ..++.--.-.+-|-|..|.+||+.++++.+..=.-.+||-
T Consensus 135 vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 2233444332 2332222346789999999999987666665556788984
No 452
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=40.86 E-value=3e+02 Score=25.47 Aligned_cols=61 Identities=10% Similarity=0.190 Sum_probs=43.1
Q ss_pred cEEEEeCCCCceeeeee--C----CCCCeEEEEEecCC-----CeEEEEeeCCCcEEEEEccCCceeEEeec
Q 013274 171 QVRLCDIASGAISQTLS--G----HRDGIMTVEWSTSS-----EWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231 (446)
Q Consensus 171 ~v~vwd~~~~~~~~~l~--~----h~~~v~sv~~s~~~-----~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~ 231 (446)
+|.+||+++++.++++. . ....+..+++.... .+..+|=+..+.|.++|+.+++-.+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 57788999988766542 1 24456777776632 24556766667899999999988777755
No 453
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=40.40 E-value=61 Score=33.81 Aligned_cols=63 Identities=11% Similarity=-0.005 Sum_probs=35.0
Q ss_pred EEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (446)
Q Consensus 108 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd 176 (446)
++..+| .++-+++++.|++|++++....+.-.......+.+.+.+... =+++..+|..+--|-
T Consensus 19 aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnh-----gl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 19 AIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNH-----GLVTATSDRRALAWK 81 (1636)
T ss_pred eeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeecc-----ceEEEeccchhheee
Confidence 444444 788899999999999999764433111111122233333321 134445566666664
No 454
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=40.15 E-value=5.4e+02 Score=28.26 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=61.5
Q ss_pred eEEEEEccC-CCEEEEeec----------CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEE
Q 013274 312 VTGLKVTED-GMYLLSAGS----------DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKA 380 (446)
Q Consensus 312 v~~l~fs~d-g~~l~sgs~----------D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (446)
+.++.|..| ++|++.|.. .|+|.++.+..+.. +........ .+.+..+.. ..+ .+..+-...+++
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~-L~~v~e~~v-~Gav~aL~~-fng-kllA~In~~vrL 852 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS-LELVAETVV-KGAVYALVE-FNG-KLLAGINQSVRL 852 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc-eeeeeeeee-ccceeehhh-hCC-eEEEecCcEEEE
Confidence 555667776 677777753 35566665554211 111111100 111111111 122 233334467899
Q ss_pred EEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEE
Q 013274 381 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV 422 (446)
Q Consensus 381 ~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~v 422 (446)
++..+++.++.=..|..++..+.+.-.|..++.|..=+.+-+
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 998888788877888888888888888888888765554433
No 455
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=39.88 E-value=79 Score=23.19 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=23.3
Q ss_pred cceEEEEEcCCCCEEEE-eeCCCcEEEeCCC
Q 013274 397 EYVNCCCFSSQDQELYT-GGNDRQILVWCPS 426 (446)
Q Consensus 397 ~~v~~~~fSpd~~~lvt-gs~D~~v~vW~~~ 426 (446)
...+.++++||+++|.- ....+.|.++..+
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 45688999999988774 5557889998754
No 456
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=38.97 E-value=8.5 Score=20.35 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=6.0
Q ss_pred EEcCCCCE
Q 013274 403 CFSSQDQE 410 (446)
Q Consensus 403 ~fSpd~~~ 410 (446)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 37888875
No 457
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=38.08 E-value=3.4e+02 Score=25.35 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=33.6
Q ss_pred CCcEEEEEeC-----CCeEEEEECCCCeeeEEEecCC--ceEEeeeccCCCCceEEEEeeCCC----cEEEEeCCCCce
Q 013274 115 DTGLFVTGSY-----DHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDV----QVRLCDIASGAI 182 (446)
Q Consensus 115 ~~~~l~s~s~-----D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lasgs~d~----~v~vwd~~~~~~ 182 (446)
++.+++.|+. -..+..+|+.+.+-...-.++. ........ .+..+.+.|+.++ .+.+||.++...
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~---~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVK---LQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEE---ECCEEEEEcCCCCccccceEEEecCCCee
Confidence 5667777774 2467888887665433212221 11111111 1234566665543 357889887653
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.92 E-value=2.1e+02 Score=28.82 Aligned_cols=91 Identities=9% Similarity=0.126 Sum_probs=50.9
Q ss_pred ccceeEEEeecCCCCEEEEeeCCCcEEEEEcc---cCcCCCCC--Cccc---cccceEEeccccccCccccEeEEEEeec
Q 013274 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQ---RATDYEGG--GHIA---KHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (446)
Q Consensus 43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~---~~~~~~~~--~~~~---~~~~~~~~~~~~~~gh~~~V~~~~~~~~ 114 (446)
+-.|..+..++ .|..++=+|.||-+.++=.+ ....++.+ ..++ +....++.. ...-.+..+.|+|.
T Consensus 103 ~feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-----s~~ltl~Qa~WHP~ 176 (741)
T KOG4460|consen 103 LFEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-----STSLTLKQAAWHPS 176 (741)
T ss_pred eEEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-----CCceeeeeccccCC
Confidence 34677888886 46677777888877665311 11111111 0111 111111111 12234556678875
Q ss_pred C--CcEEEEEeCCCeEEEEECCCCeee
Q 013274 115 D--TGLFVTGSYDHYVKVWDTNCTRVV 139 (446)
Q Consensus 115 ~--~~~l~s~s~D~~i~iWd~~~~~~~ 139 (446)
. ...|..-+.|.+||+||+...+.+
T Consensus 177 S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 177 SILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ccCCceEEEEecCcEEEEEecCCcchh
Confidence 4 457777788999999999765544
No 459
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=37.11 E-value=6.5e+02 Score=28.81 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=20.5
Q ss_pred ccccCeEEEEEccCCCEEEEeecCCcEE
Q 013274 307 AHYGAVTGLKVTEDGMYLLSAGSDSRIR 334 (446)
Q Consensus 307 ~h~~~v~~l~fs~dg~~l~sgs~D~~i~ 334 (446)
+|...+.+|+.+|||..+++-..+-+||
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCchhhh
Confidence 4566788999999999887665555443
No 460
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=36.90 E-value=3.4e+02 Score=25.01 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=71.6
Q ss_pred CeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEE
Q 013274 311 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCL 390 (446)
Q Consensus 311 ~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 390 (446)
.-..|+..|||..-.++...+.|-=-|..+++...+.+.. ...+--+...||+...+......+.-+|-++.+..+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~----Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~ 138 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGS----GASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTR 138 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCC----CCCCceEEECCCCCeeEecCcceeEEecCcccceEE
Confidence 3456788899977777877777877788887654432211 123344556677776666555555555554444321
Q ss_pred -Ee--cccccceEEEEEcCCCCEEEEeeCC---------CcEEEeCCCC
Q 013274 391 -TF--RGHYEYVNCCCFSSQDQELYTGGND---------RQILVWCPSR 427 (446)
Q Consensus 391 -~l--~gH~~~v~~~~fSpd~~~lvtgs~D---------~~v~vW~~~~ 427 (446)
.| ..-....+...|-++|.+-.|+... +.|+||....
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq 187 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ 187 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC
Confidence 22 2234667899999999998887643 6688886653
No 461
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=36.89 E-value=2.9e+02 Score=25.14 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=48.5
Q ss_pred CccccEeEEEEeecC------CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCC-CceEEEEeeCCCcEE
Q 013274 101 GHKYAISSAIWYPVD------TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAA-SHMLIAAGTEDVQVR 173 (446)
Q Consensus 101 gh~~~V~~~~~~~~~------~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lasgs~d~~v~ 173 (446)
.+...|+|+.....+ -+.|+-|-.++.|.|-|......+..+.+++..-.+..+..-. -...|+.++.||.|+
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEE
Confidence 345678887653321 2468889999999999998888888887776533333332221 234667777788776
Q ss_pred E
Q 013274 174 L 174 (446)
Q Consensus 174 v 174 (446)
+
T Consensus 254 ~ 254 (257)
T PF14779_consen 254 T 254 (257)
T ss_pred E
Confidence 5
No 462
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=36.68 E-value=1.7e+02 Score=25.65 Aligned_cols=58 Identities=17% Similarity=0.099 Sum_probs=41.3
Q ss_pred cEEEE-eCCCceEEEEee--cCceEEEecccccceEEEEEcCCCCEEEEeeCC------CcEEEe-CCC
Q 013274 368 AVVFV-PCMTAVKAFDIW--SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND------RQILVW-CPS 426 (446)
Q Consensus 368 ~~~~~-~~~~~~~~~d~~--~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D------~~v~vW-~~~ 426 (446)
..+++ ..+-.+.+|++. ..+.+.+|+.- +.|..++++.-|.+|+|-..+ ..+|++ ++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence 44444 444579999987 33556677766 789999999999999985443 256776 554
No 463
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.60 E-value=3.5e+02 Score=25.11 Aligned_cols=32 Identities=9% Similarity=0.177 Sum_probs=25.9
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274 396 YEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427 (446)
Q Consensus 396 ~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~ 427 (446)
......+||.|.++.|.-+-+-.=++|+..+.
T Consensus 180 N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 180 NKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred CcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 55678999999999998888887777776653
No 464
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=33.08 E-value=4.2e+02 Score=24.94 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=17.2
Q ss_pred ccCeEEEEEccCCCEEEEeecCCc
Q 013274 309 YGAVTGLKVTEDGMYLLSAGSDSR 332 (446)
Q Consensus 309 ~~~v~~l~fs~dg~~l~sgs~D~~ 332 (446)
.+.++.|.+.+++..+++-+.++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~ 42 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGP 42 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCC
Confidence 456888999965555666677777
No 465
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.94 E-value=5e+02 Score=25.80 Aligned_cols=118 Identities=11% Similarity=0.074 Sum_probs=70.3
Q ss_pred ccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee--eEEEec---CCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV--VMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (446)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd 176 (446)
.+++|.++.|++ |.+.+|.--.|++|.+.+....+. +...++ ...+....|+.. .. +|.-+ +.-+.+|-
T Consensus 65 d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s---~e-~A~i~-~~G~e~y~ 138 (657)
T KOG2377|consen 65 DKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS---TE-IAFIT-DQGIEFYQ 138 (657)
T ss_pred CCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC---ee-EEEEe-cCCeEEEE
Confidence 456888988887 888999999999999998732221 111111 112334444432 11 22222 23366666
Q ss_pred CCCCc-eeeeeeCCCCCeEEEEEecCCCeEEEEee-CCCcEEEEEccCCce
Q 013274 177 IASGA-ISQTLSGHRDGIMTVEWSTSSEWILVTGG-CDGAIRFWDIRRAGC 225 (446)
Q Consensus 177 ~~~~~-~~~~l~~h~~~v~sv~~s~~~~~~l~S~s-~Dg~I~iWd~~~~~~ 225 (446)
+...+ .++..+.|...|..-.|.++...+|.+.+ ..++..=+-++++..
T Consensus 139 v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 139 VLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred EchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 55443 34556778899999899988776655555 445555555555443
No 466
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=31.65 E-value=4.7e+02 Score=25.02 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=44.7
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR 190 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~ 190 (446)
..+..+..|+.|.-.|.++++.+......+....+.--....++ .+..++.++.++.+|.++|..........
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCCCcEEEEEecCC
Confidence 35555688888888888888766544433200011000001122 36777888889999999998887776554
No 467
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=31.51 E-value=5.4e+02 Score=27.75 Aligned_cols=103 Identities=9% Similarity=0.046 Sum_probs=62.4
Q ss_pred CeEEEEEccC-CCEEEEeecCCcEEEEecCcCceeee-eeeEE-----Ee-----ecCCCeEEEEcCCCcEEEEeCCCce
Q 013274 311 AVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTLV-NFETV-----RL-----QTSKPIQLATTQDPAVVFVPCMTAV 378 (446)
Q Consensus 311 ~v~~l~fs~d-g~~l~sgs~D~~i~lWd~~~~~~~~~-~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (446)
+...++|+|. ...||.-...|.--||++...+.... ..... .. .......+....+...+++.....+
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l 226 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKL 226 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCce
Confidence 4677899985 45788899999999999932111000 00000 00 0112224556666667777777788
Q ss_pred EEEEeecCceEE--EecccccceEEEEEcCC--CCEEEE
Q 013274 379 KAFDIWSGKTCL--TFRGHYEYVNCCCFSSQ--DQELYT 413 (446)
Q Consensus 379 ~~~d~~~~~~~~--~l~gH~~~v~~~~fSpd--~~~lvt 413 (446)
.++|+.+..... .......+|.++.-+|+ +..++-
T Consensus 227 ~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL 265 (765)
T PF10214_consen 227 MLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL 265 (765)
T ss_pred EEEECCCCCccchhccCCChhheeeEEecCCccceEEEE
Confidence 888887765532 22345577889988888 444443
No 468
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=30.92 E-value=4.3e+02 Score=24.60 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=39.6
Q ss_pred ceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE---EEEEecC-CCeEEEEeeCCCcEEEEEc
Q 013274 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM---TVEWSTS-SEWILVTGGCDGAIRFWDI 220 (446)
Q Consensus 160 ~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~---sv~~s~~-~~~~l~S~s~Dg~I~iWd~ 220 (446)
+.+|+|.-.-..|.+.|-++|+.++.+.|....=. ...|+-. +-.++-.+..+++|.++|=
T Consensus 155 G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 155 GDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred ccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 45788888888999999999999999977622111 1112221 1223334456788999984
No 469
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=30.77 E-value=1.6e+02 Score=19.55 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=15.4
Q ss_pred ceEEEEEcCCCCEEEEeeC
Q 013274 398 YVNCCCFSSQDQELYTGGN 416 (446)
Q Consensus 398 ~v~~~~fSpd~~~lvtgs~ 416 (446)
.+.++++-|||+.|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4678888999999998853
No 470
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=30.53 E-value=4.2e+02 Score=24.18 Aligned_cols=164 Identities=13% Similarity=0.104 Sum_probs=85.3
Q ss_pred CCccce--eEEEeecCCCCEEEEeeCCC--cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274 41 PHKGSI--NSLQVDLTEERYLLSGASDS--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (446)
Q Consensus 41 ~H~~~v--~~l~~s~~~~~~l~s~s~Dg--~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~ 116 (446)
||.... -.|.|. .++.++-|.+.-| .|+.+|+++++.... ......++.+ + +... +.
T Consensus 40 pHd~~aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~----~~l~~~~FgE---------G---it~~--~d 100 (264)
T PF05096_consen 40 PHDPTAFTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQS----VPLPPRYFGE---------G---ITIL--GD 100 (264)
T ss_dssp E--TT-EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEE----EE-TTT--EE---------E---EEEE--TT
T ss_pred CCCCcccCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEE----EECCccccce---------e---EEEE--CC
Confidence 676444 468884 3678888998877 699999988753210 0001111111 1 1111 23
Q ss_pred cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC--CC---
Q 013274 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH--RD--- 191 (446)
Q Consensus 117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h--~~--- 191 (446)
.+..=.=.++...+||.++-+.+.+++.++.-.-++ .+ +..++.| .....++.+|.++-+..+++.-. ..
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~d--g~~Li~S-DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SD--GKRLIMS-DGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE--EC--SSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecCCcceEEE--cC--CCEEEEE-CCccceEEECCcccceEEEEEEEECCEECC
Confidence 333333456899999999999998888776544444 21 2334444 33567888898887766655422 12
Q ss_pred CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEee
Q 013274 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (446)
Q Consensus 192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~ 230 (446)
.+.-+.+. +| .+.|=.=....|..=|..++.+...++
T Consensus 176 ~LNELE~i-~G-~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 176 NLNELEYI-NG-KIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp -EEEEEEE-TT-EEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred CcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 34445555 33 233322223455556777776666554
No 471
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.45 E-value=4.4e+02 Score=26.67 Aligned_cols=83 Identities=7% Similarity=-0.009 Sum_probs=50.9
Q ss_pred ccccEeEEEEeecCCcEEEEEeCCCeEEEEE---------CCCCeee---EEEecCC---------ceEEeeeccCCCCc
Q 013274 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWD---------TNCTRVV---MNFKMPG---------KVYRTAMSPLAASH 160 (446)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd---------~~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~ 160 (446)
-..+|..+..++ .|..++=+|.||-+.+.= .++++.. +++.... ....++|+|.+...
T Consensus 102 V~feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 102 VLFEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred ceEEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCC
Confidence 345677777765 677888888888766642 2334322 1222111 13456788876444
Q ss_pred eEEEEeeCCCcEEEEeCCCCceeee
Q 013274 161 MLIAAGTEDVQVRLCDIASGAISQT 185 (446)
Q Consensus 161 ~~lasgs~d~~v~vwd~~~~~~~~~ 185 (446)
..+..=+.|..|++||+.....+..
T Consensus 181 ~hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhhc
Confidence 4555556799999999987665543
No 472
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=30.21 E-value=4.7e+02 Score=24.63 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=49.9
Q ss_pred CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC-------------------CCcEEEE
Q 013274 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE-------------------DVQVRLC 175 (446)
Q Consensus 115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~-------------------d~~v~vw 175 (446)
++++.++=+..+.+..+|.++|+...-..+++....+.|. +..++++-|. ..-|.+.
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~----G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vi 287 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA----GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVI 287 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee----CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEE
Confidence 4566777778888888888877665555555554444443 1122222221 1236677
Q ss_pred eCCCCceeee--eeCCCCCeEEEEEecCC
Q 013274 176 DIASGAISQT--LSGHRDGIMTVEWSTSS 202 (446)
Q Consensus 176 d~~~~~~~~~--l~~h~~~v~sv~~s~~~ 202 (446)
|+++|..+.. +.+--.++..|++-|+-
T Consensus 288 dl~tG~vv~~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 288 DLNSGDVVHWLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred ECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence 8888876543 44556667777776653
No 473
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=29.11 E-value=8.9e+02 Score=27.45 Aligned_cols=112 Identities=12% Similarity=0.130 Sum_probs=56.2
Q ss_pred CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC
Q 013274 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS 179 (446)
Q Consensus 101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~ 179 (446)
..++.|..++-. +| +|+++.. .+|.+|+++....+.-.. ..-+++-..+... ..+|+.|.--..|.+.-.+.
T Consensus 1095 E~KGtVsavceV--~G-~l~~~~G-qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~v---knlIl~gDV~ksisfl~fqe 1167 (1366)
T KOG1896|consen 1095 EQKGTVSAVCEV--RG-HLLSSQG-QKIIVRKLDRDSELIGVAFIDLPLYVHSMKVV---KNLILAGDVMKSISFLGFQE 1167 (1366)
T ss_pred hcccceEEEEEe--cc-EEEEccC-cEEEEEEeccCCcceeeEEeccceeEEehhhh---hhheehhhhhhceEEEEEcc
Confidence 456777666543 45 5555443 479999995433221111 1112222222222 12445554444454444433
Q ss_pred CceeeeeeC-C--CCCeEEEEEecCCC-eEEEEeeCCCcEEEEE
Q 013274 180 GAISQTLSG-H--RDGIMTVEWSTSSE-WILVTGGCDGAIRFWD 219 (446)
Q Consensus 180 ~~~~~~l~~-h--~~~v~sv~~s~~~~-~~l~S~s~Dg~I~iWd 219 (446)
.-....+-+ . .=.+.++.|--+|. ..|+.+..|+.|+++-
T Consensus 1168 ep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1168 EPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYM 1211 (1366)
T ss_pred CceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEE
Confidence 322222221 1 22467888766655 3467788899999884
No 474
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=28.75 E-value=90 Score=18.60 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=14.3
Q ss_pred CCEEEEeecCCcEEEEecCc
Q 013274 321 GMYLLSAGSDSRIRLWDVES 340 (446)
Q Consensus 321 g~~l~sgs~D~~i~lWd~~~ 340 (446)
+..|..++.|+.|..+|.++
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 44677788899999998753
No 475
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=28.30 E-value=2.5e+02 Score=20.77 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=31.2
Q ss_pred EEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEee
Q 013274 325 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW 384 (446)
Q Consensus 325 ~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 384 (446)
+.+..+|++--||+.+++.+.. ... ...+.-+++++|...++++-....++...|
T Consensus 31 le~~~~GRll~ydp~t~~~~vl-~~~----L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETTVL-LDG----LYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp HHT---EEEEEEETTTTEEEEE-EEE----ESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ecCCCCcCEEEEECCCCeEEEe-hhC----CCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 3455678888999998754221 222 224455788889887777655555555443
No 476
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=26.12 E-value=2.2e+02 Score=25.08 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=30.5
Q ss_pred eCCCcEEEEeCCCC--ceeeeeeCCCCCeEEEEEecCCCeEEEEe
Q 013274 167 TEDVQVRLCDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVTG 209 (446)
Q Consensus 167 s~d~~v~vwd~~~~--~~~~~l~~h~~~v~sv~~s~~~~~~l~S~ 209 (446)
...+.|.+|++.+. ....++..- +.|..+.++..|.+ ++|-
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDY-lvTl 77 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDY-LVTL 77 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccce-EEEE
Confidence 45678999999843 345566654 88999999999987 5654
No 477
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=25.67 E-value=1.3e+02 Score=16.66 Aligned_cols=25 Identities=0% Similarity=0.003 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274 398 YVNCCCFSSQDQELYTGGNDRQILVWC 424 (446)
Q Consensus 398 ~v~~~~fSpd~~~lvtgs~D~~v~vW~ 424 (446)
.|.+++.++ ++++.+.+-+-+|+|+
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 467777764 4788777788899874
No 478
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=24.24 E-value=5.7e+02 Score=23.60 Aligned_cols=63 Identities=10% Similarity=0.193 Sum_probs=38.1
Q ss_pred eEEEEECCCCeeeEEEecCCc-------eEEeeeccCCC---CceEEEEeeCCCcEEEEeCCCCceeeeeeCC
Q 013274 127 YVKVWDTNCTRVVMNFKMPGK-------VYRTAMSPLAA---SHMLIAAGTEDVQVRLCDIASGAISQTLSGH 189 (446)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h 189 (446)
+|.+||+.+.++++++.++.. ...+.+..... +....++=+...-|-|+|+.+++..+.+.++
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~ 107 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNS 107 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCG
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCC
Confidence 577889999998888876543 23333332111 1233444455568999999998776655443
No 479
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=23.93 E-value=1.5e+02 Score=29.49 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=27.5
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274 395 HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428 (446)
Q Consensus 395 H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~ 428 (446)
.-...+.|+|.||+++|||--..+.|+++++...
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 3456799999999999998776789999977543
No 480
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=20.95 E-value=7.6e+02 Score=24.86 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCC------eEEEEECCCCeeeEEEecCC-c----eEEeeeccCCCCceEEEEeeC------CCcEEEEeC
Q 013274 115 DTGLFVTGSYDH------YVKVWDTNCTRVVMNFKMPG-K----VYRTAMSPLAASHMLIAAGTE------DVQVRLCDI 177 (446)
Q Consensus 115 ~~~~l~s~s~D~------~i~iWd~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~lasgs~------d~~v~vwd~ 177 (446)
+..+++-|+.+. .+..+|+.+.+......... + .++++.. +..+++.|+. .+.+.++|+
T Consensus 122 ~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~----g~~l~vfGG~~~~~~~~ndl~i~d~ 197 (482)
T KOG0379|consen 122 GDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVV----GTKLVVFGGIGGTGDSLNDLHIYDL 197 (482)
T ss_pred CCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEE----CCEEEEECCccCcccceeeeeeecc
Confidence 356788888885 78888888776543222111 1 1222222 2345555543 456889999
Q ss_pred CCCce
Q 013274 178 ASGAI 182 (446)
Q Consensus 178 ~~~~~ 182 (446)
++.+.
T Consensus 198 ~~~~W 202 (482)
T KOG0379|consen 198 ETSTW 202 (482)
T ss_pred ccccc
Confidence 88763
No 481
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=20.69 E-value=7.2e+02 Score=23.47 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=52.3
Q ss_pred CCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC---------------------Cce
Q 013274 320 DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM---------------------TAV 378 (446)
Q Consensus 320 dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 378 (446)
+|++-++-+..|.+.-+|..+++...+.. -.+.+--+.+. +.+++++.. -.+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~-----vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv 284 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAF-----LPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGV 284 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEE-----CCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccE
Confidence 67777888888999999988775432211 01111111111 333332211 146
Q ss_pred EEEEeecCceEE--EecccccceEEEEEcCCCCE
Q 013274 379 KAFDIWSGKTCL--TFRGHYEYVNCCCFSSQDQE 410 (446)
Q Consensus 379 ~~~d~~~~~~~~--~l~gH~~~v~~~~fSpd~~~ 410 (446)
.+.|+.+|..++ .|.+--..+.++++-|+-+.
T Consensus 285 ~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r~ 318 (335)
T TIGR03032 285 AVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVRR 318 (335)
T ss_pred EEEECCCCCEEEEEEeCCceeEEEEEEEecCCCC
Confidence 788999999876 56677888999999998654
Done!