Query 013275
Match_columns 446
No_of_seqs 165 out of 197
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 07:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzz_A Protein-glutamine gamma 96.7 0.0038 1.3E-07 51.7 7.2 73 341-421 11-83 (102)
2 1ex0_A Coagulation factor XIII 96.0 0.19 6.4E-06 54.7 17.1 228 154-420 451-706 (731)
3 3hrz_B Cobra venom factor; ser 95.5 0.049 1.7E-06 52.0 9.4 86 328-420 75-163 (252)
4 3idu_A Uncharacterized protein 93.9 0.59 2E-05 39.9 11.2 81 330-421 14-94 (127)
5 1vjj_A Protein-glutamine gluta 93.8 0.095 3.2E-06 56.7 7.2 174 213-420 495-671 (692)
6 1g0d_A Protein-glutamine gamma 93.1 0.19 6.4E-06 54.4 8.1 80 330-420 582-662 (695)
7 2q3z_A Transglutaminase 2; tra 92.3 0.18 6.3E-06 54.5 6.8 81 330-420 584-665 (687)
8 2qsv_A Uncharacterized protein 89.4 9 0.00031 35.1 14.7 130 93-237 11-157 (220)
9 2ys4_A Hydrocephalus-inducing 89.3 2 6.9E-05 35.7 9.2 86 79-174 17-104 (122)
10 4fxk_B Complement C4-A alpha c 89.2 0.49 1.7E-05 51.9 6.6 84 329-420 148-233 (767)
11 4acq_A Alpha-2-macroglobulin; 88.1 3.1 0.0001 49.1 12.7 84 329-420 763-848 (1451)
12 2hr0_B Complement C3 alpha' ch 87.9 1.6 5.5E-05 48.9 9.8 84 329-420 75-163 (915)
13 3prx_B Cobra venom factor; imm 87.8 2.5 8.7E-05 50.4 11.8 81 332-420 811-895 (1642)
14 3es6_B Prolactin-inducible pro 86.9 1.5 5E-05 36.9 6.7 73 340-421 12-84 (118)
15 2b39_A C3; thioester, immune d 86.0 1.9 6.5E-05 51.5 9.5 81 332-420 825-910 (1661)
16 2xzz_A Protein-glutamine gamma 85.8 1.8 6.3E-05 35.3 6.6 73 95-173 14-86 (102)
17 2pn5_A TEP1R, thioester-contai 85.6 2.3 8E-05 49.5 9.9 74 340-419 670-749 (1325)
18 2ys4_A Hydrocephalus-inducing 81.9 2.9 9.9E-05 34.7 6.4 70 345-426 36-105 (122)
19 1vjj_A Protein-glutamine gluta 80.7 3 0.0001 45.1 7.5 72 332-411 479-556 (692)
20 2l0d_A Cell surface protein; s 80.6 17 0.00059 30.1 10.6 79 333-421 3-82 (114)
21 1ex0_A Coagulation factor XIII 80.2 2.6 8.9E-05 45.9 6.8 70 333-411 516-591 (731)
22 3cu7_A Complement C5; Mg domai 77.7 2 6.7E-05 51.4 5.4 80 332-419 820-910 (1676)
23 1g0d_A Protein-glutamine gamma 77.3 4 0.00014 44.1 7.1 71 332-411 470-546 (695)
24 2e6j_A Hydin protein; PAPD, st 73.7 8.5 0.00029 30.9 6.8 80 84-172 6-92 (112)
25 2q3z_A Transglutaminase 2; tra 70.2 12 0.0004 40.6 8.6 74 93-173 593-669 (687)
26 3qbt_B Inositol polyphosphate 68.6 15 0.0005 31.4 7.4 83 346-433 39-129 (140)
27 3qbt_B Inositol polyphosphate 67.3 22 0.00077 30.2 8.4 73 93-172 35-123 (140)
28 3ugu_A S-arrestin; arrestin fo 65.9 13 0.00046 37.2 7.4 88 331-424 209-305 (380)
29 2r39_A FIXG-related protein; s 63.9 19 0.00064 29.6 7.0 70 331-411 7-83 (118)
30 2icn_B Prolactin-inducible pro 62.1 33 0.0011 28.6 8.1 67 340-413 12-78 (118)
31 2e6j_A Hydin protein; PAPD, st 59.8 17 0.00059 29.0 5.9 70 345-424 21-92 (112)
32 1z9l_A Vesicle-associated memb 59.3 23 0.00079 29.5 6.8 53 350-412 27-79 (128)
33 1m1s_A WR4; structural genomic 59.0 18 0.00062 30.1 6.0 50 353-412 26-75 (116)
34 3idu_A Uncharacterized protein 57.2 64 0.0022 27.0 9.2 73 96-176 28-100 (127)
35 1msp_A MSP, major sperm protei 56.8 21 0.00072 29.8 6.1 55 351-415 26-80 (126)
36 3ugu_A S-arrestin; arrestin fo 56.5 20 0.0007 35.9 6.8 29 97-125 224-252 (380)
37 1row_A SSP-19, MSP-domain prot 56.2 22 0.00074 29.1 5.9 49 353-411 18-66 (109)
38 2g30_A AP-2 complex subunit be 54.8 30 0.001 32.8 7.5 58 349-411 54-111 (258)
39 2l0d_A Cell surface protein; s 53.4 83 0.0028 25.9 9.1 72 97-175 15-87 (114)
40 1suj_A CONE arrestin; sensory 53.0 37 0.0013 34.2 8.2 83 330-415 189-277 (392)
41 3isy_A Bsupi, intracellular pr 52.0 92 0.0032 25.9 9.2 92 99-192 16-119 (120)
42 2cri_A Vesicle-associated memb 49.0 29 0.001 29.7 5.9 53 350-412 31-83 (147)
43 2qsv_A Uncharacterized protein 48.7 89 0.003 28.2 9.6 72 92-172 126-202 (220)
44 1suj_A CONE arrestin; sensory 48.3 30 0.001 34.9 6.6 30 97-126 205-234 (392)
45 2r5o_A Putative ATP binding co 48.1 61 0.0021 28.6 8.1 93 343-443 63-167 (188)
46 1g4m_A Beta-arrestin1; sensory 42.2 78 0.0027 31.7 8.7 83 330-415 192-280 (393)
47 1wic_A Hypothetical protein ri 41.3 37 0.0013 29.3 5.4 52 352-413 37-88 (152)
48 3isy_A Bsupi, intracellular pr 35.7 1.9E+02 0.0065 24.0 10.3 82 332-421 4-99 (120)
49 2d7p_A Filamin-C; beta-sandwic 35.6 58 0.002 26.5 5.4 64 95-172 22-85 (112)
50 3qis_A Inositol polyphosphate 34.2 98 0.0034 30.5 7.9 83 346-433 42-132 (366)
51 2kut_A Uncharacterized protein 32.2 28 0.00095 29.2 2.9 70 340-413 6-77 (122)
52 1kyf_A Alpha-adaptin C; protei 28.7 1E+02 0.0034 28.7 6.5 77 97-177 38-117 (247)
53 3hrz_B Cobra venom factor; ser 28.3 2.6E+02 0.0089 25.8 9.4 79 88-173 86-167 (252)
54 3hs8_A Adaptor protein complex 26.1 69 0.0024 30.5 4.9 76 97-176 64-142 (273)
55 3qis_A Inositol polyphosphate 25.4 1.3E+02 0.0045 29.5 7.0 63 93-162 38-105 (366)
56 3es6_B Prolactin-inducible pro 24.0 2.8E+02 0.0097 22.7 7.7 77 87-173 11-87 (118)
57 1row_A SSP-19, MSP-domain prot 23.1 1.9E+02 0.0065 23.3 6.4 59 104-171 18-77 (109)
58 1m1s_A WR4; structural genomic 20.9 2.9E+02 0.0098 22.7 7.1 59 104-171 26-85 (116)
59 4fxk_B Complement C4-A alpha c 20.8 7.2E+02 0.025 26.5 12.4 78 89-173 159-237 (767)
60 2kut_A Uncharacterized protein 20.4 92 0.0032 26.0 3.9 78 96-175 11-95 (122)
No 1
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=96.71 E-value=0.0038 Score=51.66 Aligned_cols=73 Identities=5% Similarity=0.138 Sum_probs=60.5
Q ss_pred ecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecccceEEeC
Q 013275 341 EVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRIT 420 (446)
Q Consensus 341 ~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is 420 (446)
+++...++++++.+++.++|--...+....+.++... + ..+ ....++.+.||++..+.+.+.|..+|.++|-
T Consensus 11 ~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~G------L-~~~-~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~ 82 (102)
T 2xzz_A 11 TLLGAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSG------L-QRP-KILNVGDIGGNETVTLRQSFVPVRPGPRQLI 82 (102)
T ss_dssp EESSCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETT------T-EEE-EEEEECCBCTTCEEEEEEEECCCSCSSCCCE
T ss_pred EECCCcccCCeEEEEEEEECCCCCcccCEEEEEECCC------C-Ccc-eEEEcCcCCCCCEEEEEEEEecCcccceEEE
Confidence 4566668999999999999997777777888998753 2 344 5567899999999999999999999998874
Q ss_pred c
Q 013275 421 G 421 (446)
Q Consensus 421 g 421 (446)
.
T Consensus 83 a 83 (102)
T 2xzz_A 83 A 83 (102)
T ss_dssp E
T ss_pred E
Confidence 3
No 2
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=95.97 E-value=0.19 Score=54.69 Aligned_cols=228 Identities=10% Similarity=0.027 Sum_probs=126.8
Q ss_pred EEEEEEccccCceEEEEEE----------EEEcCCC---ceeeeceEEEEEe------------ecCeEEEEEeEEcccc
Q 013275 154 FIVEHDVKELGAHTLVCTA----------LYSDGEG---ERKYLPQFFKFIV------------SNPLSVRTKVRVVKVG 208 (446)
Q Consensus 154 ~iv~~~lke~G~h~L~c~V----------sY~~~~G---e~~~frK~fkF~v------------~~Pl~VrtK~~~~~~~ 208 (446)
..++.+-+.+|..|..=+| .|.-+.| |+..|.|..++.. ..++.++-|.-.+
T Consensus 451 ~~~~~~t~~VG~~ISTKaVG~d~ReDIT~~YKypEGS~eER~~~~kA~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~--- 527 (731)
T 1ex0_A 451 VVENVDATHIGKLIVTKQIGGDGMMDITDTYKFQEGQEEERLALETALMYGAKKPLNTSRSMKSRSNVDMDFEVENA--- 527 (731)
T ss_dssp EEEEEECSSTTCEEEEECSSSSCEEECHHHHCCCTTSHHHHHHHHHHHTTTCBCCSCCCCC-----CEEEEEEECCC---
T ss_pred EEEeeccccccceEeccCCCCCCcccccccCcCCCCCHHHHHHHHHHHhhcccccccccccccCCCCeEEEEecCCC---
Confidence 3567777888888877666 5555554 2233333222100 1234444443212
Q ss_pred ccccCCeeEEEEEEEecccccEEEEeEEeeecC-CceeeeecCCCCCCCCCccccccc-CCceEEeCCCCeeeEEEEEee
Q 013275 209 ATHFQEITFLEACIENHTKSNLYMDQVEFEPSQ-NWSATMLKADGPHSDYNAQSREIF-KPPVLIRSGGGIHNYLYQLKM 286 (446)
Q Consensus 209 ~~~~~~~~~LEaqiqN~s~~~l~le~v~Lep~~-~~~~~~ln~~~~~~~~~~~~~~~~-~~~~l~~~~gd~~q~lf~l~~ 286 (446)
...+++-|-+.|.|.|+..-. -++.|.... -|+-.. ...+. ..-.+-++|++....-..|..
T Consensus 528 --~iG~df~v~l~~~N~s~~~~~-v~~~l~a~~v~YtG~~-------------~~~~~~~~~~~~L~p~~~~~i~~~i~y 591 (731)
T 1ex0_A 528 --VLGKDFKLSITFRNNSHNRYT-ITAYLSANITFYTGVP-------------KAEFKKETFDVTLEPLSFKKEAVLIQA 591 (731)
T ss_dssp --BTTCCEEEEEEEEECSSSCEE-EEEEEEEEEECTTSCE-------------EEEEEEEEEEEEECTTEEEEEEEEECH
T ss_pred --CCCCCEEEEEEEEECCCCCEE-EEEEEEEEEEeeCCcc-------------ccceeEeeEEEEECCCceEEEEEEECH
Confidence 135688899999999987632 122222111 111100 00011 111344667777777666666
Q ss_pred cCCCCCCCccccCceeeEEEEEEEEcCCCCCceeeEEeeeee-cCcCCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCC
Q 013275 287 LSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGT-TITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKE 365 (446)
Q Consensus 287 ~~~~~~~~~~~~g~~~lGkL~I~WRs~~Ge~G~L~Ts~l~~~-~~~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~ 365 (446)
..-.. + ...+... =-.-+..-...++.-. . ++. .....+|.|.+. ...++++++.+++.++|--..+
T Consensus 592 ~~Y~~-~-L~d~~~i--~~~a~~~v~et~~~~~---~--~~di~l~~P~l~I~v~---g~~~v~~~l~v~vsf~NPL~~~ 659 (731)
T 1ex0_A 592 GEYMG-Q-LLEQASL--HFFVTARINETRDVLA---K--QKSTVLTIPEIIIKVR---GTQVVGSDMTVTVQFTNPLKET 659 (731)
T ss_dssp HHHTT-T-CCTTCEE--EEEEEEEETTTCCEEE---E--EEEEECBCCCCEEEEE---ECCBTTSCEEEEEEEECCSSSC
T ss_pred HHHhh-h-ccCCCEE--EEEEEEEECCCCeEEE---E--EEEEEEeCCCEEEEeC---CCcccCCeEEEEEEEECCCCCc
Confidence 53321 1 1111111 1112222232222111 1 222 245556766654 4457899999999999997777
Q ss_pred cccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecccceEEeC
Q 013275 366 QGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRIT 420 (446)
Q Consensus 366 ~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is 420 (446)
+..-.+.++... + ..+ ....++.|.||++..+.+.+.|..+|.++|-
T Consensus 660 L~~c~~~vEG~G------L-~~~-~~~~~~~v~pg~~~~~~~~~~P~~~G~r~L~ 706 (731)
T 1ex0_A 660 LRNVWVHLDGPG------V-TRP-MKKMFREIRPNSTVQWEEVCRPWVSGHRKLI 706 (731)
T ss_dssp EEEEEEEEEETT------T-EEE-EEEEEEEECTTCEEEEEEEECCSSCEEEEEE
T ss_pred ccceEEEEECCC------C-Cce-eeEecCccCCCCEEEEEEEEEeccccceEEE
Confidence 776888887752 2 233 5577899999999999999999999999974
No 3
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=95.52 E-value=0.049 Score=52.02 Aligned_cols=86 Identities=13% Similarity=0.175 Sum_probs=66.9
Q ss_pred ecCcCCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEeccc---ceeecccCCCCeeE
Q 013275 328 TTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR---IMALAPVEAFGSTD 404 (446)
Q Consensus 328 ~~~~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s---~~~Lg~L~P~~s~~ 404 (446)
.....+++-+. .++|-.++-++-|.+.+.|.|+.+..+. +.+.|..+ +++...+.. ..+--.|.++++..
T Consensus 75 ~i~v~kpffv~-~~LP~sv~rGE~~~l~~~V~Ny~~~~~~-v~V~l~~~-----~~~~~~~~~~~~~~~~v~v~a~~~~~ 147 (252)
T 3hrz_B 75 EIRVMKVFFID-LQMPYSVVKNEQVEIRAILHNYVNEDIY-VRVELLYN-----PAFCSASTKGQRYRQQFPIKALSSRA 147 (252)
T ss_dssp EEEBCCSEEEE-ECCCSCEETTCCEEEEEEEEECSSSCEE-EEEEECCC-----TTEEESCCSSCCEEEEEEECTTEEEE
T ss_pred eEEEECCEEEE-cCCCcEEeeCCEEEEEEEEEcccCceEE-EEEEEEcC-----CceEeecCCCCceEEEEEECCCCeEE
Confidence 34567777555 5899999999999999999999998887 77777664 356665432 11222689999999
Q ss_pred EEEEEEecccceEEeC
Q 013275 405 FHLNLIATKLGVQRIT 420 (446)
Q Consensus 405 ~~L~l~pl~~Glq~is 420 (446)
+.|.+.|...|.+.|.
T Consensus 148 v~f~i~p~~~G~~~i~ 163 (252)
T 3hrz_B 148 VPFVIVPLEQGLHDVE 163 (252)
T ss_dssp EEEEEEECSSEEEEEE
T ss_pred EEEEEEeccCCcEEEE
Confidence 9999999999987764
No 4
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=93.94 E-value=0.59 Score=39.91 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=61.3
Q ss_pred CcCCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEE
Q 013275 330 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNL 409 (446)
Q Consensus 330 ~~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l 409 (446)
....||.+.+ ..|+.+..+++.+++++|+|.-......+.|.+--+. - ..+.. .. .|.||++.++.++.
T Consensus 14 ~~~pDL~V~i-s~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng------~-~v~t~--~v-~La~G~s~tv~f~~ 82 (127)
T 3idu_A 14 FEFPDLTVEI-KGPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYING------T-LYKNW--TV-SLGPKEEKVLTFNW 82 (127)
T ss_dssp CSSCCEEEEE-ESCSEECTTCCEEEEEEEEECSSSCEEEEEEEEEETT------E-EEEEE--EE-EECTTCEEEEEEEE
T ss_pred ccCCCeEEEe-cCCCcccCCCEEEEEEEEEECCCCccCCcEEEEEECC------E-EEeeE--Ee-ccCCCCeEEEEEEE
Confidence 6678888855 5899999999999999999996665555777765542 1 22322 23 38999999999999
Q ss_pred EecccceEEeCc
Q 013275 410 IATKLGVQRITG 421 (446)
Q Consensus 410 ~pl~~Glq~isg 421 (446)
-|...|-+.|..
T Consensus 83 ~~~~~G~~~v~A 94 (127)
T 3idu_A 83 TPTQEGMYRINA 94 (127)
T ss_dssp CCSSCEEEEEEE
T ss_pred EcCCCcEEEEEE
Confidence 998888777654
No 5
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=93.79 E-value=0.095 Score=56.71 Aligned_cols=174 Identities=9% Similarity=0.153 Sum_probs=102.6
Q ss_pred CCeeEEEEEEEecccccEEEEeEEeeecCCceeeeecCCCCCCCCCccccccc-CCceEEeCCCCeeeEEEEEeecCCCC
Q 013275 213 QEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIF-KPPVLIRSGGGIHNYLYQLKMLSHGS 291 (446)
Q Consensus 213 ~~~~~LEaqiqN~s~~~l~le~v~Lep~~~~~~~~ln~~~~~~~~~~~~~~~~-~~~~l~~~~gd~~q~lf~l~~~~~~~ 291 (446)
.+++-|-+.+.|.|+..- .+.+... +..+--.+ .. ...+. ..-.+.++|++....-..|....-..
T Consensus 495 G~df~v~l~~~N~s~~~~---~v~~~l~----a~~v~YtG---~~---~~~~~~~~~~v~L~p~~~~~i~~~i~y~~Y~~ 561 (692)
T 1vjj_A 495 GKEVNLVLLLKNLSRDTK---TVTVNMT----AWTIIYNG---TL---VHEVWKDSATMSLDPEEEAEHPIKISYAQYER 561 (692)
T ss_dssp TSCEEEEEEEEECSSSCE---EEEEEEE----EEEECTTC---CE---EEEEEEEEEEEEECTTCEEEEEEEECHHHHHT
T ss_pred CCCEEEEEEEEECCCCCE---EEEEEEE----EEEEeeCC---cc---ccceEEeeEEEEECCCceEEEEEEECHHHHhh
Confidence 568899999999998763 2333211 11110000 00 00011 11234466777777766666653211
Q ss_pred CCCccccCceeeEEE-EEEEEcCCCCCceeeEEeeeee-cCcCCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccE
Q 013275 292 SSPVKVQGSNVLGKL-QITWRTNLGEPGRLQTQQILGT-TITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPF 369 (446)
Q Consensus 292 ~~~~~~~g~~~lGkL-~I~WRs~~Ge~G~L~Ts~l~~~-~~~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l 369 (446)
. ...++. | ++ -+..-...++ +.. ++. .....+|.|. ++...++++++.+++.++|--..++..-
T Consensus 562 -~-L~d~~~--i-~~~a~~~v~et~~---~~~---~~di~l~~P~l~I~---v~g~~~v~~~l~v~v~f~NPL~~~L~~c 627 (692)
T 1vjj_A 562 -Y-LKSDNM--I-RITAVCKVPDESE---VVV---ERDIILDNPTLTLE---VLNEARVRKPVNVQMLFSNPLDEPVRDC 627 (692)
T ss_dssp -T-CCTTCE--E-EEEEEEECTTSCC---EEE---EEEEECBCCCEEEE---ECSCCBTTSCEEEEEEEECCSSSCBCSE
T ss_pred -h-cccCCe--E-EEEEEEEECCCce---EEE---EEEEEEcCCCEEEE---eCCCcccCCeEEEEEEEECCCCCcccce
Confidence 0 111111 1 22 2223233333 221 222 2445566555 4566789999999999999977777768
Q ss_pred EEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecccceEEeC
Q 013275 370 EIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRIT 420 (446)
Q Consensus 370 ~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is 420 (446)
.+.++... + ..+.....++.|.||++..+.+.+.|..+|.++|-
T Consensus 628 ~~~vEG~G------L-~~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~r~L~ 671 (692)
T 1vjj_A 628 VLMVEGSG------L-LLGNLKIDVPTLGPKERSRVRFDILPSRSGTKQLL 671 (692)
T ss_dssp EEEEECTT------T-SSSCEEEEECCBCTTCEEEEEEEECCCSCEEEEEE
T ss_pred EEEEECCC------C-CCCceEEEcCccCCCCEEEEEEEEEeccccceEEE
Confidence 88887753 1 23555667899999999999999999999999974
No 6
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=93.11 E-value=0.19 Score=54.36 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=64.1
Q ss_pred CcCCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceee-cccCCCCeeEEEEE
Q 013275 330 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMAL-APVEAFGSTDFHLN 408 (446)
Q Consensus 330 ~~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~L-g~L~P~~s~~~~L~ 408 (446)
....+|.| +++...++++|+.+++.++|--..++....+.++... + ..+ ....+ +.|.||++..+.+.
T Consensus 582 l~~P~l~I---~v~g~~~v~~~l~a~vsf~NPL~~~L~~c~~~vEG~G------L-~~~-~~~~~~~~v~Pg~~~~~~~~ 650 (695)
T 1g0d_A 582 LSTPELLV---QVPGKAVVWEPLTAYVSFTNPLPVPLKGGVFTLEGAG------L-LSA-TQIHVNGAVAPSGKVSVKLS 650 (695)
T ss_dssp CBCCCCEE---ECCSCEETTCCEEEEEEEECCSSSCEESCEEEEEETT------T-EEE-EEEECSSEECTTCEEEEEEE
T ss_pred EcCCCEEE---EeCCCcccCCeEEEEEEEECCCCCcccceEEEEECCC------C-Ccc-eEEecCCCcCCCCEEEEEEE
Confidence 44555544 4677889999999999999997777776888888752 2 233 45667 89999999999999
Q ss_pred EEecccceEEeC
Q 013275 409 LIATKLGVQRIT 420 (446)
Q Consensus 409 l~pl~~Glq~is 420 (446)
+.|..+|.++|-
T Consensus 651 ~~P~~~G~r~L~ 662 (695)
T 1g0d_A 651 FSPMRTGVRKLL 662 (695)
T ss_dssp ECCSSCEEEEEE
T ss_pred EEcCCccceEEE
Confidence 999999999974
No 7
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=92.35 E-value=0.18 Score=54.55 Aligned_cols=81 Identities=12% Similarity=0.261 Sum_probs=63.3
Q ss_pred CcCCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceee-cccCCCCeeEEEEE
Q 013275 330 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMAL-APVEAFGSTDFHLN 408 (446)
Q Consensus 330 ~~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~L-g~L~P~~s~~~~L~ 408 (446)
....+|.|.+ |...++++++.+++.++|--+.++..-.+.++... + ..+.....+ +.|.||++..+.+.
T Consensus 584 l~~P~l~I~v---~g~~~v~~~~~v~v~f~NPL~~~L~~c~~~vEG~G------L-~~~~~~~~~~~~v~pg~~~~~~~~ 653 (687)
T 2q3z_A 584 LENPEIKIRI---LGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAG------L-TEEQKTVEIPDPVEAGEEVKVRMD 653 (687)
T ss_dssp CBCCCCEEEE---ESCCSSSSCEEEEEEEECCSSSCBCSEEEEEECTT------T-CSSCEEEEECSCBCTTCEEEEEEE
T ss_pred EeCCCEEEEe---CCCcccCCeEEEEEEEECCCCCcccceEEEEECCC------C-CCCceEEecCCCcCCCCEEEEEEE
Confidence 4455676665 45557899999999999997777776888887753 1 233344567 89999999999999
Q ss_pred EEecccceEEeC
Q 013275 409 LIATKLGVQRIT 420 (446)
Q Consensus 409 l~pl~~Glq~is 420 (446)
+.|..+|.++|-
T Consensus 654 ~~P~~~G~~~L~ 665 (687)
T 2q3z_A 654 LVPLHMGLHKLV 665 (687)
T ss_dssp ECCCSSSCEEEE
T ss_pred EEeccccceEEE
Confidence 999999999974
No 8
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=89.43 E-value=9 Score=35.11 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=82.2
Q ss_pred cccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCceEeccCCCCCCccccCCCCeeeEEEEEEcccc---CceEEE
Q 013275 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKEL---GAHTLV 169 (446)
Q Consensus 93 sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~---G~h~L~ 169 (446)
.||.+-.|+.=...+.+.|..+++++=..++ .++- ... . .....|+||++-+..+.|+-+.. |.+.=.
T Consensus 11 dFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~----~p~~-~~~-~---~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~ 81 (220)
T 2qsv_A 11 LFPISMPEDEGVVRLVVNNTDESDLQVAVVS----LPSF-VSL-D---DRAFRLQAREPRELNLSLAVPRNMPPGMKDEP 81 (220)
T ss_dssp ECCSBCTTCCCEEEEEEEECSSSCEEEEEEE----CCTT-EEC-S---CCEEEECSSSCEEEEEEECCCTTCCSEEEEEE
T ss_pred EcccccCCCcceEEEEEEeCCCCceEEEecc----CCCc-eEe-e---eCcceeCCCCceEEEEEEcchhcccCCceeeE
Confidence 6999999999999999999999888755442 2222 222 1 12357999999999999999886 656555
Q ss_pred EEEEEEcC-CCceeeeceEEEEEeec----------C-eEEE--EEeEEccccccccCCeeEEEEEEEecccccEEEEeE
Q 013275 170 CTALYSDG-EGERKYLPQFFKFIVSN----------P-LSVR--TKVRVVKVGATHFQEITFLEACIENHTKSNLYMDQV 235 (446)
Q Consensus 170 c~VsY~~~-~Ge~~~frK~fkF~v~~----------P-l~Vr--tK~~~~~~~~~~~~~~~~LEaqiqN~s~~~l~le~v 235 (446)
++|...++ +++...-+=..+-.+.. | +.+. ..|..+ . ....--+..+.|++..||.|.++
T Consensus 82 i~v~~~~~~~~~~~~~~i~v~g~v~p~~~~~~~~~~~~i~~~~~~dfG~i-----~-g~~~~~~f~i~N~G~~pL~I~~v 155 (220)
T 2qsv_A 82 LVLEVTSPETGKKAVDSVMVSLPLVDNFPALTAAQTGVMELSTYLDMGQL-----D-GETTKAAIEIRNVGAGPLRLHSV 155 (220)
T ss_dssp EEEEEECTTTCCEEEEEEEEEEEECCCGGGCCGGGCCCEECCCEEEEEEC-----T-TSCEEEEEEEEECSSSCEEEEEE
T ss_pred EEEEEEcCCCCcccccEEEEEEEEcccchhhhhccCCEEEEEeEEeeecc-----C-CCeEEEEEEEEECCCCCEEEEEE
Confidence 66666542 22311111112222221 1 2222 122222 2 45556689999999999999988
Q ss_pred Ee
Q 013275 236 EF 237 (446)
Q Consensus 236 ~L 237 (446)
.-
T Consensus 156 ~~ 157 (220)
T 2qsv_A 156 TT 157 (220)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 9
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.34 E-value=2 Score=35.71 Aligned_cols=86 Identities=15% Similarity=0.244 Sum_probs=64.8
Q ss_pred CCccCCCCcccccc--cccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCceEeccCCCCCCccccCCCCeeeEEE
Q 013275 79 ADSIGLSGLLVLPQ--AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIV 156 (446)
Q Consensus 79 ~~~~~~~~~L~LP~--sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv 156 (446)
..+.+.-+.|.+|+ .||..-+|++=...|.+.|.+..+++ ++ +..++ ...... ....|.||+..+..|
T Consensus 17 l~a~~~~~~l~~p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~---f~--~~~~~-~F~i~P----~~g~L~pg~~~~i~V 86 (122)
T 2ys4_A 17 IKARGARAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAV---FH--IKTCR-PFSIEP----AIGTLNVGESMQLEV 86 (122)
T ss_dssp SCCCSCCCCCCCCSEECCCSEESSSCEEEEEEEECCSSSCEE---EE--EECCT-TEEEES----SEEEECTTCEEEEEE
T ss_pred EEEEcCCcEECCCCeeecCCeecCCeEEEEEEEEECCCCCEE---EE--EecCC-CeEEEC----CcCEECCCCEEEEEE
Confidence 44556667888885 89999999999999999999887654 22 33322 333322 147899999999999
Q ss_pred EEEccccCceEEEEEEEE
Q 013275 157 EHDVKELGAHTLVCTALY 174 (446)
Q Consensus 157 ~~~lke~G~h~L~c~VsY 174 (446)
.|.=++.|.|.-...+.|
T Consensus 87 ~F~P~~~g~~~~~l~v~~ 104 (122)
T 2ys4_A 87 EFEPQSVGDHSGRLIVCY 104 (122)
T ss_dssp EECCSSSBCCCCBCEEEE
T ss_pred EEEcCCCccEEEEEEEEE
Confidence 999999999976666666
No 10
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=89.17 E-value=0.49 Score=51.95 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=65.9
Q ss_pred cCcCCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEeccc--ceeecccCCCCeeEEE
Q 013275 329 TITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR--IMALAPVEAFGSTDFH 406 (446)
Q Consensus 329 ~~~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s--~~~Lg~L~P~~s~~~~ 406 (446)
....+++-+. .++|-+++.++-|.+.+.|.|+++..+. +.|.|... +++...+.. ...+ .|.++++..+.
T Consensus 148 ~~v~kpf~v~-~~lP~~v~~GD~~~i~~~V~N~~~~~~~-v~v~l~~~-----~~~~~~~~~~~~~~~-~v~a~~~~~v~ 219 (767)
T 4fxk_B 148 LRVFREFHLH-LRLPMSVRRFEQLELRPVLYNYLDKNLT-VSVHVSPV-----EGLCLAGGGGLAQQV-LVPAGSARPVA 219 (767)
T ss_dssp EECCCSEEEE-CCCCSCEETTCEEEECCEEEECSSSCEE-EEEEECCC-----TTEECSSSSCCCEEE-EECSSCEEECC
T ss_pred EEEeccEEEe-cCCCCeeccCCEEEEEEEEEECCCCCEE-EEEEEEec-----CCeEEecCCceeEEE-EEcCCCeEEEE
Confidence 3456666444 5899999999999999999999999887 78888664 356555432 2333 58999999999
Q ss_pred EEEEecccceEEeC
Q 013275 407 LNLIATKLGVQRIT 420 (446)
Q Consensus 407 L~l~pl~~Glq~is 420 (446)
|.+.|...|.+.|.
T Consensus 220 f~i~~~~~G~~~i~ 233 (767)
T 4fxk_B 220 FSVVPTAAAAVSLK 233 (767)
T ss_dssp EEEEECSCSEEEEE
T ss_pred EEEEECccCcEEEE
Confidence 99999999998874
No 11
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=88.06 E-value=3.1 Score=49.12 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=65.4
Q ss_pred cCcCCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEeccc--ceeecccCCCCeeEEE
Q 013275 329 TITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR--IMALAPVEAFGSTDFH 406 (446)
Q Consensus 329 ~~~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s--~~~Lg~L~P~~s~~~~ 406 (446)
....+++-+. .++|-++.-++-|.+.+.|.|+.+..+. +.|.|..+ +++.+.+.. ...+ .|.++++..+.
T Consensus 763 v~v~kpf~v~-~~LP~sv~rGE~~~l~~~V~N~~~~~~~-v~V~l~~~-----~~~~~~~~~~~~~~v-~l~~~~~~~v~ 834 (1451)
T 4acq_A 763 LRAFQPFFVE-LTMPYSVIRGEAFTLKATVLNYLPKCIR-VSVQLEAS-----PAFLAVPVEKEQAPH-CICANGRQTVS 834 (1451)
T ss_dssp ECCBCSEEEE-EECCSEEESSSCEEEEEEEEECSSSCEE-EEEEECCC-----TTEEEEESCSCCCCE-EECTTEEEEEE
T ss_pred EEEECCEEEE-ccCCceEecCCEEEEEEEEEeccCccEE-EEEEEEcC-----CCeEeecCCCCceEE-EECCCCeEEEE
Confidence 4455666444 5899999999999999999999998877 77777654 356665532 2333 57999999999
Q ss_pred EEEEecccceEEeC
Q 013275 407 LNLIATKLGVQRIT 420 (446)
Q Consensus 407 L~l~pl~~Glq~is 420 (446)
|.+.|...|.+.|.
T Consensus 835 f~v~p~~~G~~~i~ 848 (1451)
T 4acq_A 835 WAVTPKSLGNVNFT 848 (1451)
T ss_dssp EEEEECSCEEEEEE
T ss_pred EEEEECccceEEEE
Confidence 99999999987763
No 12
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=87.89 E-value=1.6 Score=48.94 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=65.0
Q ss_pred cCcCCCeEEEEEecCceEeeCCcEEEEEEEEeCCC-CCcccEEEEEeeCCCCCcceEEEecc----cceeecccCCCCee
Q 013275 329 TITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTD-KEQGPFEIWLSQNDSDEEKVVMINGL----RIMALAPVEAFGST 403 (446)
Q Consensus 329 ~~~~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~-r~~~~l~l~l~~~~~~~~~~~~~~G~----s~~~Lg~L~P~~s~ 403 (446)
....+++-+. .++|-+++.++-|.+.+.|.|+++ ..+. +.|.|..+ +++...|. ....+ .|.++++.
T Consensus 75 ~~v~kp~~v~-~~LP~~v~~GD~~~i~~~v~N~~~~~~~~-v~v~l~~~-----~~~~~~~~~~~~~~~~v-~l~~~~~~ 146 (915)
T 2hr0_B 75 VTVMQDFFID-LRLPYSVVRNEQVEIRAVLYNYRQNQELK-VRVELLHN-----PAFCSLATTKRRHQQTV-TIPPKSSL 146 (915)
T ss_dssp EEECCSSEEE-EECCSEEETTCCEEEEEEEEECCSSCCEE-EEEEECCC-----TTEECSCCSSSCEEEEE-EECTTEEE
T ss_pred EEEeccEEEE-ccCCCEEecCcEEEEEEEEEcCCCCeeEE-EEEEEecC-----CceEeecCCCCcceeEE-EECCCCeE
Confidence 3455666444 589999999999999999999999 8877 77777654 35655542 12334 67999999
Q ss_pred EEEEEEEecccceEEeC
Q 013275 404 DFHLNLIATKLGVQRIT 420 (446)
Q Consensus 404 ~~~L~l~pl~~Glq~is 420 (446)
.+.|.+.|...|.+.|.
T Consensus 147 ~v~f~i~~~~~G~~~i~ 163 (915)
T 2hr0_B 147 SVPYVIVPLKTGLQEVE 163 (915)
T ss_dssp EEEEEEEECSCEEEEEE
T ss_pred EEEEEEEECccceEEEE
Confidence 99999999999988763
No 13
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=87.80 E-value=2.5 Score=50.37 Aligned_cols=81 Identities=14% Similarity=0.200 Sum_probs=62.9
Q ss_pred CCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecc----cceeecccCCCCeeEEEE
Q 013275 332 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGL----RIMALAPVEAFGSTDFHL 407 (446)
Q Consensus 332 ~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~----s~~~Lg~L~P~~s~~~~L 407 (446)
.+++-+. .++|-++.-++-|.+.+.|.|+.+..+. +.|.|..+ +++...+. ....+ .|.++++..+.|
T Consensus 811 ~kpffv~-l~LPysv~rGEq~~l~v~VfNy~~~~~~-V~V~L~~s-----~~~~~~~~~~~~~~q~v-~v~a~~~~~v~f 882 (1642)
T 3prx_B 811 MKVFFID-LQMPYSVVKNEQVEIRAILHNYVNEDIY-VRVELLYN-----PAFCSASTKGQRYRQQF-PIKALSSRAVPF 882 (1642)
T ss_dssp CCSEEEE-CCCCSCEETTCCEEEEEEEEECSSSCEE-EEEEECCC-----TTEEESCCSSSCCEEEE-EECSSEEEEEEE
T ss_pred ECCEEEE-ccCCCEEecCCEEEEEEEEEcCCCCcEE-EEEEEEcC-----CCeEeeccCCCcceeEE-EECCCCeEEEEE
Confidence 4444333 4799999999999999999999998887 77877664 35666653 12333 689999999999
Q ss_pred EEEecccceEEeC
Q 013275 408 NLIATKLGVQRIT 420 (446)
Q Consensus 408 ~l~pl~~Glq~is 420 (446)
.+.|...|.+.|.
T Consensus 883 ~i~p~~~G~~~i~ 895 (1642)
T 3prx_B 883 VIVPLEQGLHDVE 895 (1642)
T ss_dssp EEEECSCEEEEEE
T ss_pred EEEEeecccEEEE
Confidence 9999999988753
No 14
>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23
Probab=86.88 E-value=1.5 Score=36.93 Aligned_cols=73 Identities=10% Similarity=0.025 Sum_probs=53.2
Q ss_pred EecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecccceEEe
Q 013275 340 VEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRI 419 (446)
Q Consensus 340 ~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~i 419 (446)
.++|-.+.-++-|.++..|.|+-+..|. +.+.|..+. .|......... .-|-++...+|.|.+.|+ |-..|
T Consensus 12 l~lPysv~rgE~~~~~~~V~nyl~~~~~-v~v~L~~s~-----~~~~~~~~~~t-~Clc~~~~~t~~W~i~~l--g~vni 82 (118)
T 3es6_B 12 FDIPKSVRPNDEVTAVLAVQTELKECMV-VKTYLISSI-----PLQGAFNYKYT-ACLCDDNPKTFYWDFYTN--RTVQI 82 (118)
T ss_dssp CCCCSEECSSCCEEEEEEEEECCSSCEE-EEEEEEESS-----CCCSGGGCEEE-EEECSSSCEEEEEEECCS--SCEEE
T ss_pred eeCCceEecCCEEEEEEEEEecccceEE-EEEEecCCc-----CEEccCCCccc-EEecCCCceEEEEEEEeC--CeEEE
Confidence 5799999999999999999999888888 888887753 22111111111 147889999999999885 65554
Q ss_pred Cc
Q 013275 420 TG 421 (446)
Q Consensus 420 sg 421 (446)
..
T Consensus 83 Tv 84 (118)
T 3es6_B 83 AA 84 (118)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 15
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=85.96 E-value=1.9 Score=51.50 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=62.3
Q ss_pred CCCeEEEEEecCceEeeCCcEEEEEEEEeCCC-CCcccEEEEEeeCCCCCcceEEEecc----cceeecccCCCCeeEEE
Q 013275 332 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTD-KEQGPFEIWLSQNDSDEEKVVMINGL----RIMALAPVEAFGSTDFH 406 (446)
Q Consensus 332 ~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~-r~~~~l~l~l~~~~~~~~~~~~~~G~----s~~~Lg~L~P~~s~~~~ 406 (446)
.+++-+. .++|-+++.++-|.+.+.|.|+++ ..+. +.+.|... +++...+. ....+ .|.++++..+.
T Consensus 825 ~kpf~v~-~~LP~sv~~GD~~~i~~~V~N~~~~~~~~-v~v~l~~~-----~~~~~~~~~~~~~~~~v-~v~a~~~~~v~ 896 (1661)
T 2b39_A 825 MQDFFID-LRLPYSVVRNEQVEIRAILYNYREAENLK-VRVELLYN-----PAFCSLATAKKRHQQTI-TIPARSSVAVP 896 (1661)
T ss_dssp CCSEEEE-EECCSCEESSCEEEEEEEEEECCTTCCEE-EEEEECCC-----TTEECSSCSSCCCEEEE-EECTTCEEEEE
T ss_pred EeeEEEE-ecCCcEEEeCCEEEEEEEEEcCCCCccEE-EEEEEcCC-----CCeEeecCCCCcceEEE-EECCCCcEEEE
Confidence 3444333 579999999999999999999999 8877 77777654 35655543 22334 68999999999
Q ss_pred EEEEecccceEEeC
Q 013275 407 LNLIATKLGVQRIT 420 (446)
Q Consensus 407 L~l~pl~~Glq~is 420 (446)
|.+.|...|.+.|.
T Consensus 897 f~i~p~~~G~~~i~ 910 (1661)
T 2b39_A 897 YVIVPLKIGLHEVE 910 (1661)
T ss_dssp EEEEECSCEEEEEE
T ss_pred EEEEEcccCeEEEE
Confidence 99999999988763
No 16
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=85.79 E-value=1.8 Score=35.32 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=57.8
Q ss_pred cceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCceEeccCCCCCCccccCCCCeeeEEEEEEccccCceEEEEEEE
Q 013275 95 GAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTAL 173 (446)
Q Consensus 95 G~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~Vs 173 (446)
|.+-+|+.+.+.+++.|--+.+++++.+.+|=--=...... ..+++.||+++...+.+-=+..|.+.|.+..+
T Consensus 14 g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~------~~~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~ 86 (102)
T 2xzz_A 14 GAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL------NVGDIGGNETVTLRQSFVPVRPGPRQLIASLD 86 (102)
T ss_dssp SCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE------EECCBCTTCEEEEEEEECCCSCSSCCCEEEEE
T ss_pred CCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE------EcCcCCCCCEEEEEEEEecCcccceEEEEEEE
Confidence 66788999999999999999999999999873221111111 13469999999999999999999999987754
No 17
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=85.61 E-value=2.3 Score=49.49 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=59.4
Q ss_pred EecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEeccc------ceeecccCCCCeeEEEEEEEecc
Q 013275 340 VEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR------IMALAPVEAFGSTDFHLNLIATK 413 (446)
Q Consensus 340 ~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s------~~~Lg~L~P~~s~~~~L~l~pl~ 413 (446)
.++|-+++.++-|.+.+.|.|+++..+. +.+.|...+ +++-++|.. ...+ .|.++++..+.|.+.|..
T Consensus 670 ~~lP~~v~~Gd~~~l~~~v~N~~~~~~~-v~v~l~~~~----~~~~~~~~~~~~~~~~~~v-~v~~~~~~~v~f~i~~~~ 743 (1325)
T 2pn5_A 670 ENLPYSIKRGEAVVLQFTLFNNLGAEYI-ADVTLYNVA----NQTEFVGRPNTDLSYTKSV-SVPPKVGVPISFLIKARK 743 (1325)
T ss_dssp EECCSEEETTCEEEEEEEEEECSSSCEE-EEEEEECGG----GCEEETTSCTTCCEEEEEE-EECTTCCEEEEEEEEECS
T ss_pred cCCCcEEEcCCEEEEEEEEEeCCCCcEE-EEEEEeecC----CceEEeccCCCCCcceEEE-EECCCCeEEEEEEEEEcc
Confidence 5789999999999999999999999887 888886542 246666542 2334 679999999999999999
Q ss_pred cceEEe
Q 013275 414 LGVQRI 419 (446)
Q Consensus 414 ~Glq~i 419 (446)
.|...|
T Consensus 744 ~G~~~i 749 (1325)
T 2pn5_A 744 LGEMAV 749 (1325)
T ss_dssp SEEEEE
T ss_pred cceEEE
Confidence 997766
No 18
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.88 E-value=2.9 Score=34.72 Aligned_cols=70 Identities=13% Similarity=0.131 Sum_probs=52.4
Q ss_pred eEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecccceEEeCceEE
Q 013275 345 VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITV 424 (446)
Q Consensus 345 ~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgi~l 424 (446)
.+.++..-+.++.|+|..+.... + .+... ..|.+.=. -|.|+||++..+.+++.|..+|.+.-.=+..
T Consensus 36 ~~~v~~~~~~~~~l~N~g~~~~~-f--~~~~~-----~~F~i~P~----~g~L~pg~~~~i~V~F~P~~~g~~~~~l~v~ 103 (122)
T 2ys4_A 36 TCPVKYSTQKILLVRNIGNKNAV-F--HIKTC-----RPFSIEPA----IGTLNVGESMQLEVEFEPQSVGDHSGRLIVC 103 (122)
T ss_dssp SEESSSCEEEEEEEECCSSSCEE-E--EEECC-----TTEEEESS----EEEECTTCEEEEEEEECCSSSBCCCCBCEEE
T ss_pred CeecCCeEEEEEEEEECCCCCEE-E--EEecC-----CCeEEECC----cCEECCCCEEEEEEEEEcCCCccEEEEEEEE
Confidence 45788999999999999887655 4 44432 36888643 3788999999999999999999865444333
Q ss_pred Ee
Q 013275 425 FD 426 (446)
Q Consensus 425 ~D 426 (446)
+|
T Consensus 104 ~~ 105 (122)
T 2ys4_A 104 YD 105 (122)
T ss_dssp ES
T ss_pred EC
Confidence 34
No 19
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=80.67 E-value=3 Score=45.13 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=53.1
Q ss_pred CCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeec------ccCCCCeeEE
Q 013275 332 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA------PVEAFGSTDF 405 (446)
Q Consensus 332 ~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg------~L~P~~s~~~ 405 (446)
..++.+.+ ..++.+.++++|.+.+.++|.+++... +.+.+.- ..+.++|.....+. .|.|+++..+
T Consensus 479 ~~~v~~~~-~~~~~~~~G~df~v~l~~~N~s~~~~~-v~~~l~a------~~v~YtG~~~~~~~~~~~~v~L~p~~~~~i 550 (692)
T 1vjj_A 479 EPSIIGKL-KVAGMLAVGKEVNLVLLLKNLSRDTKT-VTVNMTA------WTIIYNGTLVHEVWKDSATMSLDPEEEAEH 550 (692)
T ss_dssp CCSEEEEE-EECSCCBTTSCEEEEEEEEECSSSCEE-EEEEEEE------EEECTTCCEEEEEEEEEEEEEECTTCEEEE
T ss_pred CCCeEEEE-EcCCCCCCCCCEEEEEEEEECCCCCEE-EEEEEEE------EEEeeCCccccceEEeeEEEEECCCceEEE
Confidence 44566665 366778899999999999999888766 6666643 46777777554443 4789999999
Q ss_pred EEEEEe
Q 013275 406 HLNLIA 411 (446)
Q Consensus 406 ~L~l~p 411 (446)
.+.+-+
T Consensus 551 ~~~i~y 556 (692)
T 1vjj_A 551 PIKISY 556 (692)
T ss_dssp EEEECH
T ss_pred EEEECH
Confidence 987644
No 20
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=80.58 E-value=17 Score=30.11 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=56.1
Q ss_pred CCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEec
Q 013275 333 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT 412 (446)
Q Consensus 333 ~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl 412 (446)
.||.+.-. .|+.+..+++.+|+..|+|.-......+.+.+.-+ +-.+.+ ..++.|.+|.+.++.++.-|.
T Consensus 3 PDL~vt~i-tP~~~~~~~~~ti~atVkN~G~~~a~~~~V~ly~~------g~~v~t---~~v~~LaaG~s~tv~~~w~~~ 72 (114)
T 2l0d_A 3 PDLVPVSL-TPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVD------GIVVDT---QTVTSLESENSTNVDFHWTLD 72 (114)
T ss_dssp CCEEEEEE-ECSEECTTSEEEEEEEEEECSSSCBCCEEEEEEET------TEEEEE---EEESCBCBTCEEEEEEEEECC
T ss_pred CCcEEEec-cCCCcCCCCeEEEEEEEEECCCCCCCCEEEEEEEC------CEEEcc---eecccccCCCEEEEEEEEeec
Confidence 34544434 48889999999999999999665544466766543 222222 256679999999999988887
Q ss_pred -ccceEEeCc
Q 013275 413 -KLGVQRITG 421 (446)
Q Consensus 413 -~~Glq~isg 421 (446)
..|-+.|.-
T Consensus 73 ~~~G~ytl~a 82 (114)
T 2l0d_A 73 GTANSYTLTV 82 (114)
T ss_dssp CSCSEEEEEE
T ss_pred CcCceEEEEE
Confidence 478887753
No 21
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=80.21 E-value=2.6 Score=45.85 Aligned_cols=70 Identities=13% Similarity=0.249 Sum_probs=51.8
Q ss_pred CCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeec------ccCCCCeeEEE
Q 013275 333 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA------PVEAFGSTDFH 406 (446)
Q Consensus 333 ~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg------~L~P~~s~~~~ 406 (446)
.++.+.+.. +.+.++++|.+.+.++|.+++... +.+.+.- ..+.++|.....+. .|.|+++..+.
T Consensus 516 ~~v~~~i~~--~~~~iG~df~v~l~~~N~s~~~~~-v~~~l~a------~~v~YtG~~~~~~~~~~~~~~L~p~~~~~i~ 586 (731)
T 1ex0_A 516 SNVDMDFEV--ENAVLGKDFKLSITFRNNSHNRYT-ITAYLSA------NITFYTGVPKAEFKKETFDVTLEPLSFKKEA 586 (731)
T ss_dssp -CEEEEEEE--CCCBTTCCEEEEEEEEECSSSCEE-EEEEEEE------EEECTTSCEEEEEEEEEEEEEECTTEEEEEE
T ss_pred CCeEEEEec--CCCCCCCCEEEEEEEEECCCCCEE-EEEEEEE------EEEeeCCccccceeEeeEEEEECCCceEEEE
Confidence 456677654 778899999999999999888766 6666643 46777776544433 47899999998
Q ss_pred EEEEe
Q 013275 407 LNLIA 411 (446)
Q Consensus 407 L~l~p 411 (446)
+.+-+
T Consensus 587 ~~i~y 591 (731)
T 1ex0_A 587 VLIQA 591 (731)
T ss_dssp EEECH
T ss_pred EEECH
Confidence 87654
No 22
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=77.71 E-value=2 Score=51.41 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=61.6
Q ss_pred CCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEeccc-----------ceeecccCCC
Q 013275 332 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR-----------IMALAPVEAF 400 (446)
Q Consensus 332 ~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s-----------~~~Lg~L~P~ 400 (446)
.+++-+. .++|-+++.++-|.+.+.|.|+++..+. +.+.|..+ +++...|.. ...+ .|.++
T Consensus 820 ~kpf~v~-~~LP~~v~~GD~~~i~~~V~N~~~~~~~-v~v~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~v-~v~a~ 891 (1676)
T 3cu7_A 820 FKDVFLE-MNIPYSVVRGEQIQLKGTVYNYRTSGMQ-FCVKMSAV-----EGICTSESPVIDHQGTKSSKCVRQ-KVEGS 891 (1676)
T ss_dssp CCSEEEE-EECCSCEETTCCEEEEEEEEECSSSCBC-CCCEECCC-----TTEECSSCC----------CCCCC-CBCTT
T ss_pred EeeEEEE-ccCCcEEEECcEEEEEEEEEcCCCCcEE-EEEEEecC-----CCeEEeccccccccccccceeEEE-EECCC
Confidence 4444333 5799999999999999999999999888 88888654 356555432 1233 67999
Q ss_pred CeeEEEEEEEecccceEEe
Q 013275 401 GSTDFHLNLIATKLGVQRI 419 (446)
Q Consensus 401 ~s~~~~L~l~pl~~Glq~i 419 (446)
++..+.|.+.|...|.+.|
T Consensus 892 ~~~~v~f~i~p~~~G~~~i 910 (1676)
T 3cu7_A 892 SSHLVTFTVLPLEIGLHNI 910 (1676)
T ss_dssp EEEECCEEEEECSSSCCCE
T ss_pred CeEEEEEEEEEcccCcEEE
Confidence 9999999999999997755
No 23
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=77.28 E-value=4 Score=44.14 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=50.8
Q ss_pred CCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeec------ccCCCCeeEE
Q 013275 332 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA------PVEAFGSTDF 405 (446)
Q Consensus 332 ~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg------~L~P~~s~~~ 405 (446)
..++.+.+. ..+.+ ++++|.+.+.++|.+++... +.+.+.- .++.++|.....+. .|.|+++..+
T Consensus 470 ~~~v~~~i~-~~~~~-~G~df~v~v~~~N~s~~~~~-v~~~l~a------~~v~YtG~~~~~~~~~~~~~~L~p~~~~~v 540 (695)
T 1g0d_A 470 QGRLQLSIK-HAQPV-FGTDFDVIVEVKNEGGRDAH-AQLTMLA------MAVTYNSLRRGECQRKTISVTVPAHKAHKE 540 (695)
T ss_dssp --CEEEEEE-ECCCB-TTCCEEEEEEEEECSSSCEE-EEEEEEE------EEECTTCBCCCCCCEEEEEEEECTTEEEEE
T ss_pred CCCeEEEEE-eCCCC-CCCCEEEEEEEEECCCCCEE-EEEEEEE------EEEeeCCcccCceeEeeEEEEECCCceEEE
Confidence 345666654 44555 99999999999999888766 6666643 46788887554433 4789999888
Q ss_pred EEEEEe
Q 013275 406 HLNLIA 411 (446)
Q Consensus 406 ~L~l~p 411 (446)
.+.+-+
T Consensus 541 ~~~i~y 546 (695)
T 1g0d_A 541 VMRLHY 546 (695)
T ss_dssp EEEECH
T ss_pred EEEECH
Confidence 887654
No 24
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.72 E-value=8.5 Score=30.87 Aligned_cols=80 Identities=10% Similarity=0.145 Sum_probs=54.0
Q ss_pred CCCcccccc---cccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCC----ceEeccCCCCCCccccCCCCeeeEEE
Q 013275 84 LSGLLVLPQ---AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDK----QRILLLDTSKSPVESIRAGGRYDFIV 156 (446)
Q Consensus 84 ~~~~L~LP~---sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s----~r~~L~~~~~~~~~~L~pg~~ld~iv 156 (446)
++|.+.+-. .||.+++|+.-...+.+.|.+..++. ++. .... ...... .+-+.|.||++.+..|
T Consensus 6 ~~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~---~~~--~~~~~~~~~~f~v~----p~~g~i~pg~~~~i~V 76 (112)
T 2e6j_A 6 SGPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDAL---FNM--TPPTSALGACFVFS----PKEGIIEPSGVQAIQI 76 (112)
T ss_dssp CCCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEE---EEE--CCCSSHHHHHCEEE----SSEEEECTTBCCEEEE
T ss_pred CCCEEEECcccEecEeEEECCEEEEEEEEEECCcceEE---EEE--ecCCccccCcEEEE----CCcCEECCCCEEEEEE
Confidence 344444433 79999999999999999999886543 222 1111 112221 1235799999999999
Q ss_pred EEEccccCceEEEEEE
Q 013275 157 EHDVKELGAHTLVCTA 172 (446)
Q Consensus 157 ~~~lke~G~h~L~c~V 172 (446)
.|.-+..|.+.-..+|
T Consensus 77 ~f~~~~~g~f~~~i~v 92 (112)
T 2e6j_A 77 SFSSIILGNFEEEFLV 92 (112)
T ss_dssp EECCCCCEEEEEEECE
T ss_pred EEECCCcceEEEEEEE
Confidence 9999999887655554
No 25
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=70.20 E-value=12 Score=40.59 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=60.2
Q ss_pred cccceeecceEEEEEEEEcCCCcceEEEEEEEE---EeCCCceEeccCCCCCCccccCCCCeeeEEEEEEccccCceEEE
Q 013275 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAE---IQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLV 169 (446)
Q Consensus 93 sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikae---lqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~ 169 (446)
--|.+-+|+.+.+.|++.|--+.+++++.+.+| |.-+..++.+ .+++.||+++...+.+-=+..|.|.|.
T Consensus 593 v~g~~~v~~~~~v~v~f~NPL~~~L~~c~~~vEG~GL~~~~~~~~~-------~~~v~pg~~~~~~~~~~P~~~G~~~L~ 665 (687)
T 2q3z_A 593 ILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEI-------PDPVEAGEEVKVRMDLVPLHMGLHKLV 665 (687)
T ss_dssp EESCCSSSSCEEEEEEEECCSSSCBCSEEEEEECTTTCSSCEEEEE-------CSCBCTTCEEEEEEEECCCSSSCEEEE
T ss_pred eCCCcccCCeEEEEEEEECCCCCcccceEEEEECCCCCCCceEEec-------CCCcCCCCEEEEEEEEEeccccceEEE
Confidence 348889999999999999999999999999887 3322223333 146999999999999999999999998
Q ss_pred EEEE
Q 013275 170 CTAL 173 (446)
Q Consensus 170 c~Vs 173 (446)
+..+
T Consensus 666 a~f~ 669 (687)
T 2q3z_A 666 VNFE 669 (687)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 26
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=68.60 E-value=15 Score=31.41 Aligned_cols=83 Identities=18% Similarity=0.146 Sum_probs=60.7
Q ss_pred EeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCC-CcceEEEecccceeecccCCCCeeEEEEEEEe-------cccceE
Q 013275 346 VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSD-EEKVVMINGLRIMALAPVEAFGSTDFHLNLIA-------TKLGVQ 417 (446)
Q Consensus 346 v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~-~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~p-------l~~Glq 417 (446)
|+.+++-+-++.|+|.+.-++. +.+....+... ..+.+-+. ++ =|.|+||++..+.+++.- ++.|-+
T Consensus 39 v~~~~~~~~~l~I~Ntg~vpa~-F~f~~~~~~~~~~~~wl~v~-P~---~G~L~Pge~~~I~v~~~v~~~~~~~ln~g~~ 113 (140)
T 3qbt_B 39 VKFRQLQKEKFQISNNGQVPCH-FSFIPKLNDSQYCKPWLRAE-PF---EGYLEPNETVDISLDVYVSKDSVTILNSGED 113 (140)
T ss_dssp ECBTCCEEEEEEEEECSSSCEE-EEEECCTTCSSSSCTTEEEE-SC---EEEECTTCEEEEEEEECBCHHHHHHHHHSSS
T ss_pred ceeeeeeeeEEEEEcCCccceE-EEEecCCCchhhhhHhhhcC-Cc---ccccCCCCeeEEEEEEEEccCcccccccchh
Confidence 6778888999999999888876 66554322110 12345554 32 467899999999999983 566778
Q ss_pred EeCceEEEecCCCeee
Q 013275 418 RITGITVFDKLEKITY 433 (446)
Q Consensus 418 ~isgi~l~D~~~~r~y 433 (446)
++..+-+..-..+|.|
T Consensus 114 ~l~diLvL~Ve~G~d~ 129 (140)
T 3qbt_B 114 KIEDILVLHLDRGKDY 129 (140)
T ss_dssp CSCEEEEEEETTSCEE
T ss_pred hhheeEEEEeecCCcE
Confidence 8888888888888887
No 27
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=67.32 E-value=22 Score=30.22 Aligned_cols=73 Identities=10% Similarity=0.017 Sum_probs=51.4
Q ss_pred cccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCC-----ceEeccCCCCCCccccCCCCeeeEEEEEEcccc----
Q 013275 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDK-----QRILLLDTSKSPVESIRAGGRYDFIVEHDVKEL---- 163 (446)
Q Consensus 93 sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s-----~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~---- 163 (446)
.||.+..|+.-+..|.+.|.+..+++ ++....... ..+... ..-+.|.||++.+..|.+.+...
T Consensus 35 dFG~v~~~~~~~~~l~I~Ntg~vpa~---F~f~~~~~~~~~~~~wl~v~----P~~G~L~Pge~~~I~v~~~v~~~~~~~ 107 (140)
T 3qbt_B 35 VFENVKFRQLQKEKFQISNNGQVPCH---FSFIPKLNDSQYCKPWLRAE----PFEGYLEPNETVDISLDVYVSKDSVTI 107 (140)
T ss_dssp EEEEECBTCCEEEEEEEEECSSSCEE---EEEECCTTCSSSSCTTEEEE----SCEEEECTTCEEEEEEEECBCHHHHHH
T ss_pred EeeeceeeeeeeeEEEEEcCCccceE---EEEecCCCchhhhhHhhhcC----CcccccCCCCeeEEEEEEEEccCcccc
Confidence 69999999999999999999988775 333322211 112221 12468999999999999987442
Q ss_pred -------CceEEEEEE
Q 013275 164 -------GAHTLVCTA 172 (446)
Q Consensus 164 -------G~h~L~c~V 172 (446)
=..+|+|.|
T Consensus 108 ln~g~~~l~diLvL~V 123 (140)
T 3qbt_B 108 LNSGEDKIEDILVLHL 123 (140)
T ss_dssp HHHSSSCSCEEEEEEE
T ss_pred cccchhhhheeEEEEe
Confidence 245888887
No 28
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=65.90 E-value=13 Score=37.19 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=60.9
Q ss_pred cCCCeEEEEEecCc-eEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEE-Ee-cc-----ccee-ecccCCCC
Q 013275 331 TSKEIELNVVEVPS-VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVM-IN-GL-----RIMA-LAPVEAFG 401 (446)
Q Consensus 331 ~~~dl~l~v~~~P~-~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~-~~-G~-----s~~~-Lg~L~P~~ 401 (446)
..+.|.+. +.+|. ...-||+..+++.|.|+|++.+..+.+.|.... .|+ ++ |. .... =..|.||+
T Consensus 209 ssGpl~L~-vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~-----~v~l~s~~~y~~~Va~~E~~epV~pgs 282 (380)
T 3ugu_A 209 SDKPLRLA-VSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVT-----NVVLYSSDYYIKTVAAEEAQEKVPPNS 282 (380)
T ss_dssp CCCEEEEE-EEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEE-----EECSSSCCEEEEEEEEEECSCCBCTTE
T ss_pred cCCCEEEE-EEeCCccCcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEE-----EEEEecCCeEEEEEEEeccCCcCCCCC
Confidence 45556555 45664 678899999999999999999876778777641 111 11 00 0000 12689999
Q ss_pred eeEEEEEEEecccceEEeCceEE
Q 013275 402 STDFHLNLIATKLGVQRITGITV 424 (446)
Q Consensus 402 s~~~~L~l~pl~~Glq~isgi~l 424 (446)
+.+=.+++.|+...-..=.||.|
T Consensus 283 t~~k~~~l~P~l~~n~~krglAL 305 (380)
T 3ugu_A 283 SLTKTLTLVPLLANNRERRGIAL 305 (380)
T ss_dssp EEEEEEEECCCGGGCSCCTTSCB
T ss_pred eEEeeEEEEEecccCCceeeEEe
Confidence 99999999999887776677765
No 29
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=63.93 E-value=19 Score=29.62 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=45.6
Q ss_pred cCCCeEEEEEecCce--E-----eeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCee
Q 013275 331 TSKEIELNVVEVPSV--V-----GIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGST 403 (446)
Q Consensus 331 ~~~dl~l~v~~~P~~--v-----~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~ 403 (446)
...++++.|..-... + .++- ..+++|.|.++..+. +.|.++.- +++-|.|... + .++||+..
T Consensus 7 ~R~~~~l~V~rdR~~Ly~~~~dG~I~N--~Ytlki~Nkt~~~~~-~~l~v~g~-----~~l~~~g~~~--i-~v~~g~~~ 75 (118)
T 2r39_A 7 AVDPAGMSVIRDRNQLFRVNSAGEVEN--TYTLKVINKTQQVQE-YNLDVKGL-----NDVSWYGKQT--I-QVEPGEVL 75 (118)
T ss_dssp -CCSEEEEEEECSSCCCCC--CCSEEE--EEEEEEEECSSSCEE-EEEEEESC-----SSCEEESCCE--E-EECTTCEE
T ss_pred ccCccEEEEEecCCceEEEcCCCeEEE--EEEEEEEECCCCCEE-EEEEEeCC-----cccEEeCCCc--E-EECCCCEE
Confidence 355666666543321 1 1222 356789999999987 88888652 4588888653 3 57999988
Q ss_pred EEEEEEEe
Q 013275 404 DFHLNLIA 411 (446)
Q Consensus 404 ~~~L~l~p 411 (446)
.+.+.+-.
T Consensus 76 ~~~v~v~~ 83 (118)
T 2r39_A 76 NLPMSLGA 83 (118)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 87776644
No 30
>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB: 3es6_B*
Probab=62.10 E-value=33 Score=28.59 Aligned_cols=67 Identities=9% Similarity=0.033 Sum_probs=49.1
Q ss_pred EecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecc
Q 013275 340 VEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATK 413 (446)
Q Consensus 340 ~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~ 413 (446)
..+|..+.-++-|++++.|.|+-+.-|. +.+.|..+.. ..+ .- ....-.=|-++...+|.|.+.|..
T Consensus 12 ltlPySv~rgE~f~lkatVfNyL~~Ci~-V~v~L~~S~~--~~~---~~-~~~~s~ClC~~~~ktf~W~v~~~~ 78 (118)
T 2icn_B 12 FDIPKSVRPNDEVTAVLAVQTELKECMV-VKTYLISSIP--LQG---AF-NYKYTACLCDDNPKTFYWDFYTNR 78 (118)
T ss_dssp CCCCSEECSSCCEEEEEEEEECCSSCEE-EEEEEEESSC--CCG---GG-GCEEEEEECSSSCEEEEEEECCSS
T ss_pred EeCCCcccCCCEEEEEEEEEeccCcCEE-EEEEEcCCCC--eEe---ec-CCcCCEEECCCCCEEEEEEEEECc
Confidence 3689999999999999999999888887 8888887642 111 00 111112357788899999998884
No 31
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.75 E-value=17 Score=28.97 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=48.8
Q ss_pred eEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcc--eEEEecccceeecccCCCCeeEEEEEEEecccceEEeCce
Q 013275 345 VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEK--VVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGI 422 (446)
Q Consensus 345 ~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~--~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgi 422 (446)
.+.++++-+.++.|+|.++.. +.+++.++. ... .|-+. . .=|.|+||++.++.+++-|-.+|...-. |
T Consensus 21 ~v~~g~~~~~~~~l~N~g~~p---~~~~~~~~~--~~~~~~f~v~-p---~~g~i~pg~~~~i~V~f~~~~~g~f~~~-i 90 (112)
T 2e6j_A 21 KVFTGSAHCYEAILYNKGSID---ALFNMTPPT--SALGACFVFS-P---KEGIIEPSGVQAIQISFSSIILGNFEEE-F 90 (112)
T ss_dssp EEESSCCEEEEEEEEECCSSC---EEEEECCCS--SHHHHHCEEE-S---SEEEECTTBCCEEEEEECCCCCEEEEEE-E
T ss_pred eEEECCEEEEEEEEEECCcce---EEEEEecCC--ccccCcEEEE-C---CcCEECCCCEEEEEEEEECCCcceEEEE-E
Confidence 356789999999999998875 446554421 111 14443 2 2457899999999999999999976543 4
Q ss_pred EE
Q 013275 423 TV 424 (446)
Q Consensus 423 ~l 424 (446)
.+
T Consensus 91 ~v 92 (112)
T 2e6j_A 91 LV 92 (112)
T ss_dssp CE
T ss_pred EE
Confidence 43
No 32
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=59.28 E-value=23 Score=29.48 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=37.4
Q ss_pred CcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEec
Q 013275 350 KPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT 412 (446)
Q Consensus 350 ~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl 412 (446)
+.....++|+|.+++. +...+.... ..-+.+.=. .|.|+||++..+.+.+.|.
T Consensus 27 ~~~~~~l~L~N~s~~~---vaFKVKTT~---p~~y~VrP~----~G~i~P~~s~~v~V~~~~~ 79 (128)
T 1z9l_A 27 DVVTTNLKLQNPSDRK---VCFKVKTTA---PRRYCVRPN----SGVIDPGSIVTVSVMLQPF 79 (128)
T ss_dssp SCEEEEEEEECCSSSC---EEEEEEESC---GGGEEEESC----EEEECTTCEEEEEEEECCC
T ss_pred ceEEEEEEEECCCCCe---EEEEEECCC---CCceEEeCC----CcEECCCCeEEEEEEECcC
Confidence 5567889999998876 445555432 233444432 6889999999999998775
No 33
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=59.02 E-value=18 Score=30.09 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEec
Q 013275 353 LLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT 412 (446)
Q Consensus 353 ~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl 412 (446)
..+++|+|.++..+. +.|...+. .-+.+.-. .|.|+||++.++.+.+.|-
T Consensus 26 ~~~l~L~N~t~~~vA-FKVKtT~p-----~~YrVrP~----~G~I~Pg~~~~I~I~~q~~ 75 (116)
T 1m1s_A 26 NSTHNITSESDSRLA-FKVKSSNN-----EHYRVRPV----YGFVDAKGKSKLDINRLPG 75 (116)
T ss_dssp EEEEEEEECSSSEEE-EEEEESCT-----TTEEEECS----EEEECTTCEEEEEEEECSC
T ss_pred EEEEEEECCCCCeEE-EEEEecCC-----CceEEcCC----ceEECCCCeEEEEEEeCCC
Confidence 678899999887654 55544332 34555543 7889999999999998873
No 34
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=57.19 E-value=64 Score=27.02 Aligned_cols=73 Identities=10% Similarity=0.030 Sum_probs=56.2
Q ss_pred ceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCceEeccCCCCCCccccCCCCeeeEEEEEEccccCceEEEEEEEEE
Q 013275 96 AIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYS 175 (446)
Q Consensus 96 ~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~VsY~ 175 (446)
.+..|++-...+.|.|.....+.+..++.-+ ....+. . ..+ .|++|++-...+.+.-+..|.|.|...|.+.
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyv--ng~~v~---t--~~v-~La~G~s~tv~f~~~~~~~G~~~v~AvVD~~ 99 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTKVRVYI--NGTLYK---N--WTV-SLGPKEEKVLTFNWTPTQEGMYRINATVDEE 99 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEEEEEEE--TTEEEE---E--EEE-EECTTCEEEEEEEECCSSCEEEEEEEEESTT
T ss_pred cccCCCEEEEEEEEEECCCCccCCcEEEEEE--CCEEEe---e--EEe-ccCCCCeEEEEEEEEcCCCcEEEEEEEEcCC
Confidence 6788999999999999999999887766644 332221 1 123 5999999888888888889999999888554
Q ss_pred c
Q 013275 176 D 176 (446)
Q Consensus 176 ~ 176 (446)
.
T Consensus 100 n 100 (127)
T 3idu_A 100 N 100 (127)
T ss_dssp C
T ss_pred C
Confidence 3
No 35
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=56.83 E-value=21 Score=29.83 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=38.4
Q ss_pred cEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecccc
Q 013275 351 PFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLG 415 (446)
Q Consensus 351 pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~G 415 (446)
..+..++|+|.|++.+. +.|.-... .-+.+.= .-|.|+||++..+.+.+-|...+
T Consensus 26 ~~~~~l~l~N~s~~~va-FKVKTT~p-----~~y~VrP----~~Gii~P~~s~~v~V~~q~~~~~ 80 (126)
T 1msp_A 26 KHTYHIKITNAGGRRIG-WAIKTTNM-----RRLSVDP----PCGVLDPKEKVLMAVSCDTFNAA 80 (126)
T ss_dssp CCCEEEEEEECSSSCEE-EEEEESCT-----TTEEEES----CEEEECTTCEEEEEEEECCCCGG
T ss_pred ceEEEEEEECCCCCeEE-EEEEcCCC-----CcEEEEC----CCeEECCCCEEEEEEEecCCCCC
Confidence 34568899999988755 54443221 2354443 36789999999999999887654
No 36
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=56.55 E-value=20 Score=35.86 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=26.2
Q ss_pred eeecceEEEEEEEEcCCCcceEEEEEEEE
Q 013275 97 IYLGETFCSYISINNSSTLEVRDVVIKAE 125 (446)
Q Consensus 97 iylGEtFs~~i~v~N~s~~~v~~V~ikae 125 (446)
-|=||+....++|+|.|+..|+.+.+++.
T Consensus 224 Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~ 252 (380)
T 3ugu_A 224 YYHGEPIPVTVAVTNSTEKTVKKIKVLVE 252 (380)
T ss_dssp EETTCCEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CcCCCEEEEEEEEEcCCCCeEeEEEEEEE
Confidence 47799999999999999999999988764
No 37
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=56.23 E-value=22 Score=29.14 Aligned_cols=49 Identities=27% Similarity=0.206 Sum_probs=35.7
Q ss_pred EEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEe
Q 013275 353 LLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA 411 (446)
Q Consensus 353 ~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~p 411 (446)
...++|+|.++..+. +.|..... .-+.+.-. .|.|+||++.++.+.+.|
T Consensus 18 ~~~l~L~N~t~~~va-FKVKtT~p-----~~y~VrP~----~G~I~P~~~~~i~I~~q~ 66 (109)
T 1row_A 18 SSTHKLVNGGAEKIV-FKIKSSNN-----NEYRIAPV----FGFVDPSGSKDVVITRTA 66 (109)
T ss_dssp EEEEEEEECSSSCEE-EEEEESCS-----SSEEEECS----EEEECTTEEEEEEEEECS
T ss_pred eEEEEEEcCCCCeEE-EEEEeCCC-----CceEEcCC----ceEECCCCeEEEEEEeCC
Confidence 478899999887655 55544332 34555543 688999999999999887
No 38
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=54.78 E-value=30 Score=32.77 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=42.9
Q ss_pred CCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEe
Q 013275 349 DKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA 411 (446)
Q Consensus 349 ~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~p 411 (446)
+--..+.++++|++..++..+.|++..+. =|+...+..... ..|+||++.++.+.+-.
T Consensus 54 ~g~i~l~l~~~N~s~~~is~faIQfNkNs----FGL~p~~~~~~~-~~L~pgqs~~v~lpl~~ 111 (258)
T 2g30_A 54 QGHIYMEMNFTNKALQHMTDFAIQFNKNS----FGVIPSTPLAIH-TPLMPNQSIDVSLPLNT 111 (258)
T ss_dssp TTEEEEEEEEEECSSSCBCCCEEEECCBT----TCCEESSCCCCC-SCBCTTCEEEEEEEEES
T ss_pred CCEEEEEEEEecCCccceeeeEEEEcccc----cCcccCccccCC-CccCCCCcEEEEEeeec
Confidence 56667889999999999998999997652 455555543221 46999999998887554
No 39
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=53.36 E-value=83 Score=25.85 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=50.2
Q ss_pred eeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCceEeccCCCCCCccccCCCCeeeEEEEEEcc-ccCceEEEEEEEEE
Q 013275 97 IYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVK-ELGAHTLVCTALYS 175 (446)
Q Consensus 97 iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lk-e~G~h~L~c~VsY~ 175 (446)
.+.|+.-...+.|.|..........++.-+ ....+. ..++..|++|.+-...+.+.-. +.|.|.|...|...
T Consensus 15 ~~~~~~~ti~atVkN~G~~~a~~~~V~ly~--~g~~v~-----t~~v~~LaaG~s~tv~~~w~~~~~~G~ytl~a~VD~~ 87 (114)
T 2l0d_A 15 VVPNTVNTMTATIENQGNKDSTSFNVSLLV--DGIVVD-----TQTVTSLESENSTNVDFHWTLDGTANSYTLTVNVDPE 87 (114)
T ss_dssp ECTTSEEEEEEEEEECSSSCBCCEEEEEEE--TTEEEE-----EEEESCBCBTCEEEEEEEEECCCSCSEEEEEEEECTT
T ss_pred cCCCCeEEEEEEEEECCCCCCCCEEEEEEE--CCEEEc-----ceecccccCCCEEEEEEEEeecCcCceEEEEEEECCC
Confidence 789999999999999977655554444322 222111 1235579999987777777776 68999999988544
No 40
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=53.05 E-value=37 Score=34.20 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=55.4
Q ss_pred CcCCCeEEEEEecCc-eEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCC-----CCcceEEEecccceeecccCCCCee
Q 013275 330 ITSKEIELNVVEVPS-VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDS-----DEEKVVMINGLRIMALAPVEAFGST 403 (446)
Q Consensus 330 ~~~~dl~l~v~~~P~-~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~-----~~~~~~~~~G~s~~~Lg~L~P~~s~ 403 (446)
...+.|.|.+ .+|. ...-|++..+++.|.|+|++....+.+.|..-.+ ....-..++-. ..-+.+.||++.
T Consensus 189 ~ssGpl~l~v-sLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~~~k~~Va~~--e~~e~V~pgst~ 265 (392)
T 1suj_A 189 LSDRPLHLEA-SLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLDKYVKTVCAE--ETNDTVAANSTL 265 (392)
T ss_dssp ETTEEEEEEE-EESCSEEETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEECSSSCCEEEEEEEEE--ECCCCBCTTEEE
T ss_pred ecCCCEEEEE-EeCCccccCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEEEEecCCcEEEEEEEE--ecCCCcCCCCEE
Confidence 3455555554 5665 6688999999999999999988877777766310 00111112211 012367999999
Q ss_pred EEEEEEEecccc
Q 013275 404 DFHLNLIATKLG 415 (446)
Q Consensus 404 ~~~L~l~pl~~G 415 (446)
...+.|+|+.+-
T Consensus 266 ~k~~~L~P~l~~ 277 (392)
T 1suj_A 266 SKTFSVTPMLAN 277 (392)
T ss_dssp EEEEEECCCGGG
T ss_pred EEEEEEeccccC
Confidence 999999988873
No 41
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=52.00 E-value=92 Score=25.91 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=50.9
Q ss_pred ecceEEEEEEEEcCCCcceEEE-----EEEEEEeCC-CceEe-ccCCC----CCCccccCCCCeeeEEEEEE-ccccCce
Q 013275 99 LGETFCSYISINNSSTLEVRDV-----VIKAEIQTD-KQRIL-LLDTS----KSPVESIRAGGRYDFIVEHD-VKELGAH 166 (446)
Q Consensus 99 lGEtFs~~i~v~N~s~~~v~~V-----~ikaelqT~-s~r~~-L~~~~----~~~~~~L~pg~~ld~iv~~~-lke~G~h 166 (446)
.|+.....|.+.|.++.++.-- +....+... ..++- -++.. ......|+||+++.+-...+ .-+.|.|
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG~Y 95 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGTY 95 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSEEE
T ss_pred CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCccE
Confidence 6899999999999988765311 111112211 11211 11100 01134699999998888777 3467999
Q ss_pred EEEEEEEEEcCCCceeeeceEEEEEe
Q 013275 167 TLVCTALYSDGEGERKYLPQFFKFIV 192 (446)
Q Consensus 167 ~L~c~VsY~~~~Ge~~~frK~fkF~v 192 (446)
+|.+.. .-..-+.+.++--=+|+|
T Consensus 96 tl~a~l--~~~~~~~~~~~~~~~~~~ 119 (120)
T 3isy_A 96 EVKVTF--KGRAENLKQVQAVQQFEV 119 (120)
T ss_dssp EEEEEE--CCEETTCCCCEEEEEEEE
T ss_pred EEEEEE--EeeeccceeeeeeeEEEe
Confidence 988764 211122244444445554
No 42
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=48.99 E-value=29 Score=29.69 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=36.8
Q ss_pred CcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEec
Q 013275 350 KPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT 412 (446)
Q Consensus 350 ~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl 412 (446)
+...-.++|+|.+++.. ...+.... ..-+.+.= ..|.|+|+++..+.+.+.|.
T Consensus 31 ~~~~~~l~L~N~s~~~V---aFKVKTT~---p~~y~VrP----~~GiI~P~~s~~v~V~l~~~ 83 (147)
T 2cri_A 31 DVVTTNLKLQNPSDRKV---CFKVKTTA---PRRYCVRP----NSGIIDPGSIVTVSVMLQPF 83 (147)
T ss_dssp SCCCEEEEEECCSSSCE---EEEEEESC---TTSEEEES----SEEECCTTCEEEEEEEECCC
T ss_pred ceEEEEEEEECCCCCcE---EEEEECCC---CccEEEcC----CCcEECCCCeEEEEEEECCC
Confidence 44567899999988764 45555432 12344443 26889999999999998775
No 43
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=48.66 E-value=89 Score=28.24 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=52.7
Q ss_pred ccccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCceEeccCCCCCCccccCCCCeeeEEEEEEcccc-Cc----e
Q 013275 92 QAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKEL-GA----H 166 (446)
Q Consensus 92 ~sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~-G~----h 166 (446)
-.||.+- |+.-...+.+.|..+.++.--.++. .++-....+. -..++||++.+..|.|+-+.. |. +
T Consensus 126 ~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~--scgct~~~~~------~~~i~PGe~~~i~v~~~~~~~~g~~~~~~ 196 (220)
T 2qsv_A 126 LDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTT--RNPALTAVPD------RTEIKPGGSTLLRIAVDPQVMKAEGWQSI 196 (220)
T ss_dssp EEEEECT-TSCEEEEEEEEECSSSCEEEEEEEE--CSTTEEEEES------CSEECTTCEEEEEEEECHHHHHHTTCSEE
T ss_pred EeeeccC-CCeEEEEEEEEECCCCCEEEEEEEe--CCCCEeeecC------CccCCCCCEEEEEEEEecCCCCCccccee
Confidence 3799999 9999999999999888776443322 2222222221 135899999999999999988 88 7
Q ss_pred EEEEEE
Q 013275 167 TLVCTA 172 (446)
Q Consensus 167 ~L~c~V 172 (446)
.-.++|
T Consensus 197 ~~~i~v 202 (220)
T 2qsv_A 197 AADISI 202 (220)
T ss_dssp EEEEEE
T ss_pred ccEEEE
Confidence 677776
No 44
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=48.29 E-value=30 Score=34.85 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.2
Q ss_pred eeecceEEEEEEEEcCCCcceEEEEEEEEE
Q 013275 97 IYLGETFCSYISINNSSTLEVRDVVIKAEI 126 (446)
Q Consensus 97 iylGEtFs~~i~v~N~s~~~v~~V~ikael 126 (446)
-|-||+....++|.|.|+..|+.+.+++..
T Consensus 205 Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q 234 (392)
T 1suj_A 205 YYHGEPINVNVKINNTTGKIVKKIKIIVEQ 234 (392)
T ss_dssp EETTCCEEEEEEEEECSSSEEEEEEEEEEE
T ss_pred ccCCCEEEEEEEEECCCCCcEeEEEEEEEE
Confidence 367999999999999999999998887743
No 45
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=48.10 E-value=61 Score=28.59 Aligned_cols=93 Identities=13% Similarity=0.013 Sum_probs=56.9
Q ss_pred CceEeeCCcEEEEEEEEeCCCC-CcccEEEEEeeCCCCCcceEEEecccce----ee-cc-cCCCC--eeEEEEEEEecc
Q 013275 343 PSVVGIDKPFLLKLKLTNQTDK-EQGPFEIWLSQNDSDEEKVVMINGLRIM----AL-AP-VEAFG--STDFHLNLIATK 413 (446)
Q Consensus 343 P~~v~l~~pF~v~~~v~N~s~r-~~~~l~l~l~~~~~~~~~~~~~~G~s~~----~L-g~-L~P~~--s~~~~L~l~pl~ 413 (446)
.+.+..++++++++++.-+.+- ... +-+.+... .+..+.|.... .+ .. +.+|. ..+|.+. ++|.
T Consensus 63 ~~~~~~Ge~v~l~i~~~~~~~i~~~v-~G~~Ik~~-----~G~~I~g~nT~~~~~~~~~~~~~~G~~~~v~f~f~-l~L~ 135 (188)
T 2r5o_A 63 PPSLTGNQQTDFLMKVVFEYDFDCVV-PGILIKTL-----DGLFLYGTNSFLASEGRENISVSRGDVRVFKFSLP-VDLN 135 (188)
T ss_dssp CSSEETTCEEEEEEEEEESSCEEEEE-EEEEEEET-----TCCEEEEEEHHHHTTTCCCEEECTTCEEEEEEEEE-CCBC
T ss_pred eeEEeCCCEEEEEEEEEECCcCCccE-EEEEEECC-----CCCEEEecCcccccccccccccCCCCEEEEEEEEe-cccC
Confidence 3567899999999999877432 222 45556554 35555555432 33 33 67888 5567778 5999
Q ss_pred cceEEeCceEEEecC---CCeeeccCCCeeeEe
Q 013275 414 LGVQRITGITVFDKL---EKITYDSLPDLEIFV 443 (446)
Q Consensus 414 ~Glq~isgi~l~D~~---~~r~y~~~~~~~vfV 443 (446)
+|--.|+= .|.|.. ....|++...+-.|-
T Consensus 136 ~G~Y~lsv-~i~~~~~~~~~~~~d~~~da~~F~ 167 (188)
T 2r5o_A 136 SGDYLLSF-GISAGNPQTDMTPLDRRYDSIILH 167 (188)
T ss_dssp SEEEEEEE-EEEEEETTTEEEEEEEEEEEEEEE
T ss_pred CCeEEEEE-EEecCCcCCCcEEEEEEccEEEEE
Confidence 99998874 334432 333456655454443
No 46
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=42.21 E-value=78 Score=31.71 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=54.9
Q ss_pred CcCCCeEEEEEecCc-eEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCC---CCcce--EEEecccceeecccCCCCee
Q 013275 330 ITSKEIELNVVEVPS-VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDS---DEEKV--VMINGLRIMALAPVEAFGST 403 (446)
Q Consensus 330 ~~~~dl~l~v~~~P~-~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~---~~~~~--~~~~G~s~~~Lg~L~P~~s~ 403 (446)
...+.+.+.+ .+|. ...-|+...+++.|.|+|.+.+..+.+.|....+ -.... ..+.-.. .-..+.||++.
T Consensus 192 ~~sG~l~l~~-sldk~~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q~~~~~~~s~~~~k~~Va~~e--~~~~V~~gs~~ 268 (393)
T 1g4m_A 192 MSDKPLHLEA-SLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEE--ADDTVAPSSTF 268 (393)
T ss_dssp SSSSCEEEEE-EESCSEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEECSSBCEEEEEEEEEEE--ECCCBCTTEEE
T ss_pred EcCCCEEEEE-EECCceEcCCCEEEEEEEEEcCCCCEEeEEEEEEEEEEEEEEecCCceEEEEEEEe--cCCcCCCCCEE
Confidence 4566776665 5555 6788999999999999999988878888866310 00000 1111110 12258999998
Q ss_pred EEEEEEEecccc
Q 013275 404 DFHLNLIATKLG 415 (446)
Q Consensus 404 ~~~L~l~pl~~G 415 (446)
...+.|+|+.+-
T Consensus 269 ~~~~~L~P~l~p 280 (393)
T 1g4m_A 269 CKVYTLTPFLAN 280 (393)
T ss_dssp EEEEEECCCGGG
T ss_pred eeEEEEcCCCCC
Confidence 888999888763
No 47
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=41.31 E-value=37 Score=29.32 Aligned_cols=52 Identities=12% Similarity=-0.006 Sum_probs=36.2
Q ss_pred EEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeEEEEEEEecc
Q 013275 352 FLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATK 413 (446)
Q Consensus 352 F~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~ 413 (446)
....++|+|.++.. +...+.... -.-+.+.= ..|.|+|+++.++.+.+.|..
T Consensus 37 ~~~~l~L~N~s~~~---VaFKVKTT~---p~~y~VrP----~~GiI~P~~s~~V~V~lq~~~ 88 (152)
T 1wic_A 37 KKTLIVLTNVTKNI---VAFKVRTTA---PEKYRVKP----SNSSCDPGASIDIIVSPHGGL 88 (152)
T ss_dssp CCEEEEEEBCSSSC---EEEEEEESC---TTTEEEES----SEEEECTTCEEEEEEEECSSS
T ss_pred EEEEEEEEcCCCCe---EEEEEECCC---CCceeecC----CCcEECCCCeEEEEEEecCcc
Confidence 35789999998865 445555432 12344443 378899999999999997753
No 48
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=35.69 E-value=1.9e+02 Score=23.97 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=49.9
Q ss_pred CCCeEEEEEecCceEeeCCcEEEEEEEEeCCCCCcc-------cEEEEEeeCCCCCcceEEE--ec----ccceeecccC
Q 013275 332 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQG-------PFEIWLSQNDSDEEKVVMI--NG----LRIMALAPVE 398 (446)
Q Consensus 332 ~~dl~l~v~~~P~~v~l~~pF~v~~~v~N~s~r~~~-------~l~l~l~~~~~~~~~~~~~--~G----~s~~~Lg~L~ 398 (446)
-++|.+.|.. -..+....+++.|+|.+++... -..+.|... ....+| +- .....--.|+
T Consensus 4 ~~~l~~~v~~----~~~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~----~G~~VwrwS~~~~FtQa~~~~tl~ 75 (120)
T 3isy_A 4 NQEVVLSIDA----IQEPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDS----EHKERYRYSKEKMFTQAFQNLTLE 75 (120)
T ss_dssp CCSEEEEEEE----EECSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECT----TCCEEEETTTTCCCCCCCEEEEEC
T ss_pred ccEEEEEEee----ccCCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECC----CCCEEEEccccchhhhhhceEEEC
Confidence 3566666632 2266799999999999887643 012333221 124555 21 1112233589
Q ss_pred CCCeeEEEEEEE-ecccceEEeCc
Q 013275 399 AFGSTDFHLNLI-ATKLGVQRITG 421 (446)
Q Consensus 399 P~~s~~~~L~l~-pl~~Glq~isg 421 (446)
||.+..+..+.= ++.+|--.+.+
T Consensus 76 pGE~~~f~~~w~~~~~pG~Ytl~a 99 (120)
T 3isy_A 76 SGETYDFSDVWKEVPEPGTYEVKV 99 (120)
T ss_dssp TTCEEEEEEEESSCCCSEEEEEEE
T ss_pred CCCEEEEEEEeCCCCCCccEEEEE
Confidence 999999998877 46777666655
No 49
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=35.61 E-value=58 Score=26.47 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=42.9
Q ss_pred cceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCceEeccCCCCCCccccCCCCeeeEEEEEEccccCceEEEEEE
Q 013275 95 GAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTA 172 (446)
Q Consensus 95 G~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V 172 (446)
+.+.+|+..+..|...+... .++|++..++.+. + .. .+...+.=...|.|--+|.|.|.+.+.+
T Consensus 22 ~~~~vg~~~~F~V~~~~a~g------~l~v~V~~P~g~~-~----~~---~v~d~~~gty~v~ytP~~~G~h~v~V~~ 85 (112)
T 2d7p_A 22 TGLKVNQPASFAVQLNGARG------VIDARVHTPSGAV-E----EC---YVSELDSDKHTIRFIPHENGVHSIDVKF 85 (112)
T ss_dssp BCCCTTCCEEEEEECTTCCS------CEEEEEECSSSCB-C----CC---EECSCBTTEEEEEECCSSCEEEEEEEEE
T ss_pred CCcccCCcEEEEEEeCCCCC------CEEEEEECCCCCe-e----ee---EEEeCCCCeEEEEEEcCCCEeEEEEEEE
Confidence 34789999888888876531 6788888876542 1 01 1222222236799999999999988764
No 50
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=34.16 E-value=98 Score=30.47 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=57.6
Q ss_pred EeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCC-CcceEEEecccceeecccCCCCeeEEEEEEEecc-------cceE
Q 013275 346 VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSD-EEKVVMINGLRIMALAPVEAFGSTDFHLNLIATK-------LGVQ 417 (446)
Q Consensus 346 v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~-~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~-------~Glq 417 (446)
|+.+++-+-++.|+|.+.-+.. +.+.-....+. ..+++-+. +. =|.|+||++.++.+++..-. .|-+
T Consensus 42 v~~~~~~~~~l~i~N~g~~pa~-f~f~~~~~~~~~~~~wl~v~-p~---~g~l~Pge~~~i~l~~~v~~~~~~~ln~g~~ 116 (366)
T 3qis_A 42 VKFRQLQKEKFQISNNGQVPCH-FSFIPKLNDSQYCKPWLRAE-PF---EGYLEPNETVDISLDVYVSKDSVTILNSGED 116 (366)
T ss_dssp ECBTCCEEEEEEEEECSSSCEE-EEEECCTTCSSSSCTTEEEE-SC---EEEECTTCEEEEEEEECBCTTTHHHHHHTSS
T ss_pred eeeCCeEEEEEEEEecCCceEE-EEEEeCCCCCCCCCCcEEEe-CC---ccEECCCCEEEEEEEEEECHHHHHHHhcCcc
Confidence 7788999999999999888766 55543322111 11234443 32 46789999999999998655 5777
Q ss_pred EeCceEEEecCCCeee
Q 013275 418 RITGITVFDKLEKITY 433 (446)
Q Consensus 418 ~isgi~l~D~~~~r~y 433 (446)
++..|-+..-..++.+
T Consensus 117 ~l~diLvL~ve~G~d~ 132 (366)
T 3qis_A 117 KIEDILVLHLDRGKDY 132 (366)
T ss_dssp CSCEEEEEEETTSCEE
T ss_pred ccceEEEEEEeCCCcE
Confidence 7777777766666665
No 51
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=32.21 E-value=28 Score=29.23 Aligned_cols=70 Identities=9% Similarity=-0.017 Sum_probs=42.4
Q ss_pred EecCceEeeCCcEEEEEEEEeCCCCCcccEEEEEeeCCCCCcceEEEecccceeecccCCCCeeE--EEEEEEecc
Q 013275 340 VEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTD--FHLNLIATK 413 (446)
Q Consensus 340 ~~~P~~v~l~~pF~v~~~v~N~s~r~~~~l~l~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~--~~L~l~pl~ 413 (446)
.--|+....+..++|...|+|.-......+.|.+--++ ....+. ..|. ..++.|.+|++.. +.++.-++.
T Consensus 6 s~sP~~p~~g~~vTvsatVkN~Gt~~s~a~~V~~yl~~-p~~gg~-~vgt--~tv~~LaaG~s~t~~v~~~~~~~~ 77 (122)
T 2kut_A 6 TLSKETPFEGEEITVSARVTNRGAAEAHNVPVAVYLGN-PAQGGV-EIGR--DTISRIPVGGTGLARVQWKATRKL 77 (122)
T ss_dssp ECCTTSCCTTCEEEEEEEEECCSSSCBCCCCEEECSSC-TTTCCC-CCBC--CCCSCBCTTCEEECCEEEECCCCC
T ss_pred ecCCCCCCCCCeEEEEEEEEeCCCcccCcEEEEEEeCC-CccCCe-EEee--EEccccCCCCeEEEEEEEecCCcc
Confidence 34688889999999999999984443332444443321 001111 2222 3468899999999 555444443
No 52
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=28.67 E-value=1e+02 Score=28.72 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=56.7
Q ss_pred eeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCc---eEeccCCCCCCccccCCCCeeeEEEEEEccccCceEEEEEEE
Q 013275 97 IYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQ---RILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTAL 173 (446)
Q Consensus 97 iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~---r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~Vs 173 (446)
-|-|..-...+.+.|-++.+++++.+.++- +.. .+.+.. ......++||+..+..+..++...=...-...++
T Consensus 38 e~~~~~gri~l~~gNKs~~~l~~f~~~i~~--~~~~~~~l~~~~--~~~~~~I~~~~q~qq~i~v~~~~~f~~~P~l~is 113 (247)
T 1kyf_A 38 EFRQNLGRMFIFYGNKTSTQFLNFTPTLIC--ADDLQTNLNLQT--KPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQ 113 (247)
T ss_dssp EEETTEEEEEEEEEECSSSCBEEEEEEEEC--CHHHHHHEEEEE--CCCCSCBCTTCEEEEEEEEEECSCCCCCCEEEEE
T ss_pred EEeCCeEEEEEEEEcCCCCceeeEEEEEec--CcccCCCeeEec--CCCCceeCCCcEEEEEEEEEEccccCCCCEEEEE
Confidence 466777788889999999999999876543 321 122211 1123469999999999999999988778888999
Q ss_pred EEcC
Q 013275 174 YSDG 177 (446)
Q Consensus 174 Y~~~ 177 (446)
|..+
T Consensus 114 f~~~ 117 (247)
T 1kyf_A 114 FRYG 117 (247)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9765
No 53
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=28.29 E-value=2.6e+02 Score=25.79 Aligned_cols=79 Identities=15% Similarity=0.074 Sum_probs=45.9
Q ss_pred ccccccccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCceEeccCCCCC---CccccCCCCeeeEEEEEEccccC
Q 013275 88 LVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKS---PVESIRAGGRYDFIVEHDVKELG 164 (446)
Q Consensus 88 L~LP~sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~---~~~~L~pg~~ld~iv~~~lke~G 164 (446)
++||.++ --||.|..-..|.|..+.. +.++|.|..... +.+...... ....+.+++.-.......-+++|
T Consensus 86 ~~LP~sv---~rGE~~~l~~~V~Ny~~~~---~~v~V~l~~~~~-~~~~~~~~~~~~~~v~v~a~~~~~v~f~i~p~~~G 158 (252)
T 3hrz_B 86 LQMPYSV---VKNEQVEIRAILHNYVNED---IYVRVELLYNPA-FCSASTKGQRYRQQFPIKALSSRAVPFVIVPLEQG 158 (252)
T ss_dssp ECCCSCE---ETTCCEEEEEEEEECSSSC---EEEEEEECCCTT-EEESCCSSCCEEEEEEECTTEEEEEEEEEEECSSE
T ss_pred cCCCcEE---eeCCEEEEEEEEEcccCce---EEEEEEEEcCCc-eEeecCCCCceEEEEEECCCCeEEEEEEEEeccCC
Confidence 6888875 4799999999999998765 345555654321 222111000 01235666543322333346778
Q ss_pred ceEEEEEEE
Q 013275 165 AHTLVCTAL 173 (446)
Q Consensus 165 ~h~L~c~Vs 173 (446)
.|.+.+++.
T Consensus 159 ~~~i~v~A~ 167 (252)
T 3hrz_B 159 LHDVEIKAS 167 (252)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEEEE
Confidence 887777664
No 54
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=26.15 E-value=69 Score=30.45 Aligned_cols=76 Identities=9% Similarity=0.055 Sum_probs=56.3
Q ss_pred eeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCc---eEeccCCCCCCccccCCCCeeeEEEEEEccccCceEEEEEEE
Q 013275 97 IYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQ---RILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTAL 173 (446)
Q Consensus 97 iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~---r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~Vs 173 (446)
-|-|...+..+-+.|-++.+++++++.+ ..+.. .+.+ .....+ ..|+||+..+..+..+++..=...-...++
T Consensus 64 e~~~~~g~i~L~~gNKs~~~it~f~~~i--~~~~~~~~~l~~-~~~~~~-~tI~p~~q~qq~i~v~~~~pF~~~P~l~is 139 (273)
T 3hs8_A 64 EFRQNLGRMFIFYGNKTSTQFLNFTPTL--ICADDLQTNLNL-QTKPVD-PTVDGGAQVQQVVNIECISDFTEAPVLNIQ 139 (273)
T ss_dssp EEETTEEEEEEEEEECSSSCBBSCCCEE--ECCTTHHHHEEE-EECCCC-SCBCTTCEEEEEEEEEECSCCCCCCEEEEE
T ss_pred EEeCceEEEEEEEEcCCCCcceeEEEEE--ECCCCCCcceEE-EecCCC-CeECCCCEEEEEEEEEEcccccCCCEEEEE
Confidence 5778899999999999999999987744 44431 1222 111122 579999999999999999876667778888
Q ss_pred EEc
Q 013275 174 YSD 176 (446)
Q Consensus 174 Y~~ 176 (446)
|..
T Consensus 140 f~~ 142 (273)
T 3hs8_A 140 FRY 142 (273)
T ss_dssp EEE
T ss_pred EEE
Confidence 975
No 55
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=25.40 E-value=1.3e+02 Score=29.55 Aligned_cols=63 Identities=10% Similarity=0.055 Sum_probs=42.7
Q ss_pred cccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCC-----ceEeccCCCCCCccccCCCCeeeEEEEEEccc
Q 013275 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDK-----QRILLLDTSKSPVESIRAGGRYDFIVEHDVKE 162 (446)
Q Consensus 93 sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s-----~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke 162 (446)
.||.+.+||.-+..|.+.|.+..+++=-.+ -+... .++... ..-+.|.||++.+..+...++.
T Consensus 38 dFg~v~~~~~~~~~l~i~N~g~~pa~f~f~---~~~~~~~~~~~wl~v~----p~~g~l~Pge~~~i~l~~~v~~ 105 (366)
T 3qis_A 38 VFENVKFRQLQKEKFQISNNGQVPCHFSFI---PKLNDSQYCKPWLRAE----PFEGYLEPNETVDISLDVYVSK 105 (366)
T ss_dssp EEEEECBTCCEEEEEEEEECSSSCEEEEEE---CCTTCSSSSCTTEEEE----SCEEEECTTCEEEEEEEECBCT
T ss_pred EeeeeeeCCeEEEEEEEEecCCceEEEEEE---eCCCCCCCCCCcEEEe----CCccEECCCCEEEEEEEEEECH
Confidence 599999999999999999998876642211 11111 112221 1246789999888888887776
No 56
>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23
Probab=23.95 E-value=2.8e+02 Score=22.71 Aligned_cols=77 Identities=5% Similarity=-0.024 Sum_probs=44.3
Q ss_pred cccccccccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCceEeccCCCCCCccccCCCCeeeEEEEEEccccCce
Q 013275 87 LLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAH 166 (446)
Q Consensus 87 ~L~LP~sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h 166 (446)
-|.||-|. =-||.|..-+.|.|.-... +.+++.|... ..+...... ..-.-|.+++ ...+.++++-+|+.
T Consensus 11 ~l~lPysv---~rgE~~~~~~~V~nyl~~~---~~v~v~L~~s-~~~~~~~~~-~~t~Clc~~~--~~t~~W~i~~lg~v 80 (118)
T 3es6_B 11 NFDIPKSV---RPNDEVTAVLAVQTELKEC---MVVKTYLISS-IPLQGAFNY-KYTACLCDDN--PKTFYWDFYTNRTV 80 (118)
T ss_dssp CCCCCSEE---CSSCCEEEEEEEEECCSSC---EEEEEEEEES-SCCCSGGGC-EEEEEECSSS--CEEEEEEECCSSCE
T ss_pred EeeCCceE---ecCCEEEEEEEEEecccce---EEEEEEecCC-cCEEccCCC-cccEEecCCC--ceEEEEEEEeCCeE
Confidence 46778764 4599999999999998754 4556666432 222111100 0001244444 23455666777777
Q ss_pred EEEEEEE
Q 013275 167 TLVCTAL 173 (446)
Q Consensus 167 ~L~c~Vs 173 (446)
.+.+++.
T Consensus 81 niTvsAe 87 (118)
T 3es6_B 81 QIAAVVD 87 (118)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 7776654
No 57
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=23.12 E-value=1.9e+02 Score=23.32 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=38.8
Q ss_pred EEEEEEEcCCCcceEEEEEEEEEeCCCc-eEeccCCCCCCccccCCCCeeeEEEEEEccccCceEEEEE
Q 013275 104 CSYISINNSSTLEVRDVVIKAEIQTDKQ-RILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCT 171 (446)
Q Consensus 104 s~~i~v~N~s~~~v~~V~ikaelqT~s~-r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~ 171 (446)
+|.+.+.|.++..| .+|+ +|.+. +.... ...+-++||++.+..|.+.=.+...|-+.+.
T Consensus 18 ~~~l~L~N~t~~~v---aFKV--KtT~p~~y~Vr----P~~G~I~P~~~~~i~I~~q~~~~~~dKflvq 77 (109)
T 1row_A 18 SSTHKLVNGGAEKI---VFKI--KSSNNNEYRIA----PVFGFVDPSGSKDVVITRTAGAPKEDKLVVH 77 (109)
T ss_dssp EEEEEEEECSSSCE---EEEE--EESCSSSEEEE----CSEEEECTTEEEEEEEEECSCCCEEEEEEEE
T ss_pred eEEEEEEcCCCCeE---EEEE--EeCCCCceEEc----CCceEECCCCeEEEEEEeCCCCCCCCEEEEE
Confidence 59999999988643 5554 34433 22221 1257799999999998887655556655543
No 58
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=20.89 E-value=2.9e+02 Score=22.66 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=38.1
Q ss_pred EEEEEEEcCCCcceEEEEEEEEEeCCC-ceEeccCCCCCCccccCCCCeeeEEEEEEccccCceEEEEE
Q 013275 104 CSYISINNSSTLEVRDVVIKAEIQTDK-QRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCT 171 (446)
Q Consensus 104 s~~i~v~N~s~~~v~~V~ikaelqT~s-~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~ 171 (446)
+|.+.+.|.++.. |.+|+ +|.+ ...... ...+-++||++.+..|.+.=.....+-+.+.
T Consensus 26 ~~~l~L~N~t~~~---vAFKV--KtT~p~~YrVr----P~~G~I~Pg~~~~I~I~~q~~~~k~DKflVq 85 (116)
T 1m1s_A 26 NSTHNITSESDSR---LAFKV--KSSNNEHYRVR----PVYGFVDAKGKSKLDINRLPGPPKEDKIVIQ 85 (116)
T ss_dssp EEEEEEEECSSSE---EEEEE--EESCTTTEEEE----CSEEEECTTCEEEEEEEECSCCSCEEEEEEE
T ss_pred EEEEEEECCCCCe---EEEEE--EecCCCceEEc----CCceEECCCCeEEEEEEeCCCCCCCCEEEEE
Confidence 7999999998864 35554 3433 222221 1256799999999888887655555555443
No 59
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=20.83 E-value=7.2e+02 Score=26.48 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=46.2
Q ss_pred cccccccceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCceEeccCCC-CCCccccCCCCeeeEEEEEEccccCceE
Q 013275 89 VLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTS-KSPVESIRAGGRYDFIVEHDVKELGAHT 167 (446)
Q Consensus 89 ~LP~sfG~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~-~~~~~~L~pg~~ld~iv~~~lke~G~h~ 167 (446)
+||.+ +--||.|..-+.|.|..+..+ .++|.|..... +.+.... ...-..+.+|+.-.......-+.+|.+.
T Consensus 159 ~lP~~---v~~GD~~~i~~~V~N~~~~~~---~v~v~l~~~~~-~~~~~~~~~~~~~~v~a~~~~~v~f~i~~~~~G~~~ 231 (767)
T 4fxk_B 159 RLPMS---VRRFEQLELRPVLYNYLDKNL---TVSVHVSPVEG-LCLAGGGGLAQQVLVPAGSARPVAFSVVPTAAAAVS 231 (767)
T ss_dssp CCCSC---EETTCEEEECCEEEECSSSCE---EEEEEECCCTT-EECSSSSCCCEEEEECSSCEEECCEEEEECSCSEEE
T ss_pred CCCCe---eccCCEEEEEEEEEECCCCCE---EEEEEEEecCC-eEEecCCceeEEEEEcCCCeEEEEEEEEECccCcEE
Confidence 45555 678999999999999987654 45555554322 2221111 1112346777744333333456889988
Q ss_pred EEEEEE
Q 013275 168 LVCTAL 173 (446)
Q Consensus 168 L~c~Vs 173 (446)
+.+.+.
T Consensus 232 i~v~A~ 237 (767)
T 4fxk_B 232 LKVVAR 237 (767)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877653
No 60
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=20.36 E-value=92 Score=25.98 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=53.1
Q ss_pred ceeecceEEEEEEEEcCCCcceEEEEEEEEEeCCCceEeccCCCCCCccccCCCCeeeEEEEEEcc--cc-----CceEE
Q 013275 96 AIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVK--EL-----GAHTL 168 (446)
Q Consensus 96 ~iylGEtFs~~i~v~N~s~~~v~~V~ikaelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lk--e~-----G~h~L 168 (446)
+..-|++......|.|.-........++..+..+.+--.+..+ ..++.|++|++....+...+- .. |.|.+
T Consensus 11 ~p~~g~~vTvsatVkN~Gt~~s~a~~V~~yl~~p~~gg~~vgt--~tv~~LaaG~s~t~~v~~~~~~~~~~~a~~Gsy~v 88 (122)
T 2kut_A 11 TPFEGEEITVSARVTNRGAAEAHNVPVAVYLGNPAQGGVEIGR--DTISRIPVGGTGLARVQWKATRKLAGRAANPGVPV 88 (122)
T ss_dssp SCCTTCEEEEEEEEECCSSSCBCCCCEEECSSCTTTCCCCCBC--CCCSCBCTTCEEECCEEEECCCCCSSCCSCCCCCC
T ss_pred CCCCCCeEEEEEEEEeCCCcccCcEEEEEEeCCCccCCeEEee--EEccccCCCCeEEEEEEEecCCcccccccCceEEE
Confidence 4577999999999999988777776666666554332222222 236789999988755555543 43 99999
Q ss_pred EEEEEEE
Q 013275 169 VCTALYS 175 (446)
Q Consensus 169 ~c~VsY~ 175 (446)
...|...
T Consensus 89 ~AvVD~~ 95 (122)
T 2kut_A 89 YAVVDPD 95 (122)
T ss_dssp CEEECCT
T ss_pred EEEEcCC
Confidence 8887554
Done!