Query 013277
Match_columns 446
No_of_seqs 383 out of 2739
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.4E-93 2.9E-98 706.8 34.4 347 74-433 1-350 (371)
2 PRK14296 chaperone protein Dna 100.0 1E-82 2.2E-87 645.9 36.4 344 76-432 3-360 (372)
3 PRK14288 chaperone protein Dna 100.0 3.2E-80 7E-85 627.5 34.8 341 76-432 2-344 (369)
4 PRK14276 chaperone protein Dna 100.0 8E-80 1.7E-84 627.3 36.1 345 76-432 3-355 (380)
5 PRK14280 chaperone protein Dna 100.0 1E-79 2.2E-84 625.8 36.5 345 76-432 3-352 (376)
6 PRK14298 chaperone protein Dna 100.0 8.2E-80 1.8E-84 625.7 35.6 343 76-432 4-350 (377)
7 PRK14287 chaperone protein Dna 100.0 9.6E-80 2.1E-84 624.5 35.6 344 76-432 3-347 (371)
8 PRK14277 chaperone protein Dna 100.0 9.2E-80 2E-84 628.1 35.3 349 75-432 3-364 (386)
9 PRK14286 chaperone protein Dna 100.0 1.7E-79 3.7E-84 622.9 35.2 345 76-432 3-356 (372)
10 PRK14278 chaperone protein Dna 100.0 4.1E-79 8.9E-84 621.3 35.5 345 76-432 2-349 (378)
11 PRK14297 chaperone protein Dna 100.0 5E-79 1.1E-83 621.9 35.2 347 76-432 3-357 (380)
12 PTZ00037 DnaJ_C chaperone prot 100.0 5.6E-79 1.2E-83 624.4 34.6 334 74-432 25-365 (421)
13 PRK14279 chaperone protein Dna 100.0 7.8E-79 1.7E-83 621.5 34.5 352 75-432 7-377 (392)
14 PRK14281 chaperone protein Dna 100.0 5.9E-78 1.3E-82 616.5 34.9 355 76-432 2-371 (397)
15 PRK14282 chaperone protein Dna 100.0 1.7E-77 3.6E-82 608.5 36.8 350 76-436 3-367 (369)
16 PRK14285 chaperone protein Dna 100.0 1.1E-77 2.3E-82 608.3 34.0 342 76-433 2-353 (365)
17 PRK14301 chaperone protein Dna 100.0 1.3E-77 2.8E-82 609.3 34.1 344 76-432 3-349 (373)
18 PRK14295 chaperone protein Dna 100.0 3.7E-77 7.9E-82 608.6 36.3 352 75-432 7-371 (389)
19 PRK14294 chaperone protein Dna 100.0 4.4E-77 9.5E-82 604.8 35.2 343 76-432 3-349 (366)
20 PRK14284 chaperone protein Dna 100.0 6.4E-77 1.4E-81 608.1 35.7 344 77-432 1-365 (391)
21 TIGR02349 DnaJ_bact chaperone 100.0 8.6E-77 1.9E-81 601.4 35.0 346 78-433 1-353 (354)
22 PRK14300 chaperone protein Dna 100.0 3.3E-76 7.3E-81 599.2 35.3 345 76-432 2-351 (372)
23 PRK10767 chaperone protein Dna 100.0 7.5E-76 1.6E-80 597.5 35.6 344 75-432 2-347 (371)
24 PRK14283 chaperone protein Dna 100.0 9.3E-76 2E-80 597.5 35.9 351 75-432 3-355 (378)
25 PRK14291 chaperone protein Dna 100.0 1.6E-75 3.4E-80 596.2 35.1 351 76-432 2-369 (382)
26 PRK14293 chaperone protein Dna 100.0 1.6E-75 3.5E-80 594.9 34.6 351 76-432 2-353 (374)
27 PRK14289 chaperone protein Dna 100.0 2.9E-75 6.3E-80 595.7 36.0 355 75-432 3-363 (386)
28 PRK14292 chaperone protein Dna 100.0 7.8E-74 1.7E-78 582.7 34.3 344 77-432 2-347 (371)
29 PRK14290 chaperone protein Dna 100.0 2.5E-73 5.4E-78 577.2 35.6 347 76-432 2-355 (365)
30 KOG0712 Molecular chaperone (D 100.0 1.8E-69 3.8E-74 528.2 25.1 329 76-431 3-337 (337)
31 PRK14299 chaperone protein Dna 100.0 6.2E-59 1.4E-63 458.2 28.2 274 75-432 2-285 (291)
32 PRK10266 curved DNA-binding pr 100.0 9E-58 2E-62 453.2 29.7 284 76-432 3-292 (306)
33 KOG0713 Molecular chaperone (D 100.0 3.9E-43 8.4E-48 338.9 10.8 313 72-421 11-328 (336)
34 TIGR03835 termin_org_DnaJ term 100.0 1.1E-40 2.4E-45 349.1 24.8 125 290-418 692-817 (871)
35 KOG0715 Molecular chaperone (D 100.0 2.2E-41 4.7E-46 331.0 13.9 245 78-358 44-288 (288)
36 KOG0714 Molecular chaperone (D 99.9 1.2E-21 2.6E-26 192.5 16.3 263 75-397 1-305 (306)
37 PF01556 CTDII: DnaJ C termina 99.8 2.3E-21 4.9E-26 155.1 7.6 80 347-426 1-81 (81)
38 KOG0716 Molecular chaperone (D 99.8 2.7E-19 5.9E-24 168.4 6.6 72 76-147 30-102 (279)
39 COG2214 CbpA DnaJ-class molecu 99.7 4E-17 8.6E-22 153.4 14.5 69 74-142 3-73 (237)
40 KOG0718 Molecular chaperone (D 99.7 2.1E-18 4.6E-23 172.2 5.9 72 76-147 8-83 (546)
41 PTZ00341 Ring-infected erythro 99.7 3.7E-18 8E-23 184.1 5.2 77 72-148 568-644 (1136)
42 COG0484 DnaJ DnaJ-class molecu 99.7 4E-17 8.7E-22 162.7 10.5 118 221-350 158-345 (371)
43 PF00226 DnaJ: DnaJ domain; I 99.7 2.5E-17 5.4E-22 125.6 5.7 62 78-139 1-64 (64)
44 KOG0691 Molecular chaperone (D 99.7 3.3E-17 7.2E-22 159.5 6.5 88 76-170 4-92 (296)
45 KOG0717 Molecular chaperone (D 99.7 3.4E-17 7.3E-22 163.7 3.5 72 75-146 6-79 (508)
46 KOG0719 Molecular chaperone (D 99.6 3.4E-16 7.5E-21 144.0 5.8 69 76-144 13-84 (264)
47 PHA03102 Small T antigen; Revi 99.6 4E-16 8.8E-21 138.1 5.2 67 77-146 5-73 (153)
48 PRK10767 chaperone protein Dna 99.6 3E-15 6.5E-20 152.9 11.5 119 222-352 159-345 (371)
49 KOG0624 dsRNA-activated protei 99.6 2.3E-15 4.9E-20 146.2 8.1 72 75-147 392-467 (504)
50 KOG0721 Molecular chaperone (D 99.6 2E-15 4.3E-20 137.9 6.8 70 76-145 98-168 (230)
51 PRK14290 chaperone protein Dna 99.6 2.5E-15 5.5E-20 153.0 8.4 120 221-352 164-353 (365)
52 smart00271 DnaJ DnaJ molecular 99.6 2.1E-15 4.6E-20 113.2 5.5 57 77-133 1-59 (60)
53 cd06257 DnaJ DnaJ domain or J- 99.6 5.9E-15 1.3E-19 108.8 5.9 54 78-131 1-55 (55)
54 PRK14284 chaperone protein Dna 99.5 1.5E-14 3.4E-19 148.5 9.4 117 222-350 175-361 (391)
55 PRK14282 chaperone protein Dna 99.5 2.3E-14 4.9E-19 146.2 7.9 119 221-351 168-359 (369)
56 PRK14298 chaperone protein Dna 99.5 6.1E-14 1.3E-18 143.3 7.5 119 222-352 158-348 (377)
57 PRK14285 chaperone protein Dna 99.5 6.8E-14 1.5E-18 142.4 7.8 118 222-351 163-349 (365)
58 PRK14294 chaperone protein Dna 99.5 7.5E-14 1.6E-18 142.3 7.5 118 222-351 161-346 (366)
59 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.4 1.6E-13 3.4E-18 105.3 6.1 65 225-289 1-66 (66)
60 PRK14300 chaperone protein Dna 99.4 1.6E-13 3.5E-18 140.1 7.8 117 221-349 161-346 (372)
61 PRK14301 chaperone protein Dna 99.4 1.6E-13 3.5E-18 140.0 7.4 118 221-350 160-345 (373)
62 PRK14288 chaperone protein Dna 99.4 3.1E-13 6.6E-18 137.8 8.3 117 221-349 155-339 (369)
63 PRK14278 chaperone protein Dna 99.4 3.3E-13 7.1E-18 138.0 8.0 117 221-349 155-344 (378)
64 PRK14286 chaperone protein Dna 99.4 3.3E-13 7.2E-18 137.7 7.6 116 222-349 167-351 (372)
65 PRK14287 chaperone protein Dna 99.4 2.8E-13 6E-18 138.2 6.9 119 221-351 154-344 (371)
66 KOG0722 Molecular chaperone (D 99.4 1.3E-13 2.7E-18 128.5 3.9 70 72-141 28-97 (329)
67 PRK14279 chaperone protein Dna 99.4 4.6E-13 9.9E-18 137.5 8.1 116 221-349 189-372 (392)
68 PRK14276 chaperone protein Dna 99.4 3.7E-13 8.1E-18 137.8 7.2 116 222-349 163-350 (380)
69 PRK14281 chaperone protein Dna 99.4 4.9E-13 1.1E-17 137.6 7.9 117 221-349 178-366 (397)
70 TIGR02349 DnaJ_bact chaperone 99.4 4.6E-13 1E-17 136.1 7.3 116 222-349 160-347 (354)
71 KOG0550 Molecular chaperone (D 99.4 4E-13 8.6E-18 133.5 5.6 90 74-168 370-461 (486)
72 PRK14280 chaperone protein Dna 99.4 9.2E-13 2E-17 134.7 7.9 117 221-349 159-347 (376)
73 PRK14293 chaperone protein Dna 99.4 9.4E-13 2E-17 134.6 7.8 118 222-351 160-350 (374)
74 PRK05014 hscB co-chaperone Hsc 99.4 9.5E-13 2.1E-17 119.9 6.9 64 77-140 1-72 (171)
75 PRK01356 hscB co-chaperone Hsc 99.4 8.9E-13 1.9E-17 119.3 6.6 65 77-141 2-72 (166)
76 PRK14277 chaperone protein Dna 99.4 1.2E-12 2.5E-17 134.4 8.2 116 222-349 172-359 (386)
77 PRK14297 chaperone protein Dna 99.4 1.1E-12 2.3E-17 134.5 7.7 116 222-349 165-352 (380)
78 PRK14295 chaperone protein Dna 99.3 1.4E-12 2.9E-17 133.9 7.7 116 221-349 182-366 (389)
79 PRK14296 chaperone protein Dna 99.3 1.5E-12 3.2E-17 132.9 7.9 116 222-349 166-355 (372)
80 PRK14289 chaperone protein Dna 99.3 1.4E-12 3.1E-17 133.8 7.4 116 221-348 170-357 (386)
81 KOG0720 Molecular chaperone (D 99.3 7.6E-13 1.7E-17 132.9 5.1 67 76-142 234-300 (490)
82 PTZ00037 DnaJ_C chaperone prot 99.3 2.4E-12 5.1E-17 132.9 7.9 118 221-348 165-359 (421)
83 PRK14292 chaperone protein Dna 99.3 3.3E-12 7E-17 130.6 8.8 118 221-350 156-343 (371)
84 PRK14283 chaperone protein Dna 99.3 2.3E-12 5E-17 132.0 7.6 116 222-349 163-350 (378)
85 PTZ00100 DnaJ chaperone protei 99.3 1.8E-12 3.9E-17 109.1 5.3 53 75-130 63-115 (116)
86 PRK00294 hscB co-chaperone Hsc 99.3 3.6E-12 7.7E-17 116.0 7.3 66 75-140 2-75 (173)
87 PRK14291 chaperone protein Dna 99.3 9.5E-12 2.1E-16 127.5 10.2 106 221-339 172-346 (382)
88 PRK03578 hscB co-chaperone Hsc 99.3 5.7E-12 1.2E-16 115.1 7.3 65 76-140 5-77 (176)
89 PRK09430 djlA Dna-J like membr 99.2 2.2E-11 4.8E-16 118.7 5.5 56 76-131 199-262 (267)
90 PHA02624 large T antigen; Prov 99.1 3.4E-11 7.4E-16 126.8 5.4 60 76-138 10-71 (647)
91 COG5407 SEC63 Preprotein trans 99.1 9.3E-11 2E-15 117.3 4.9 71 77-147 98-174 (610)
92 PRK14299 chaperone protein Dna 99.0 6.8E-10 1.5E-14 109.9 5.7 91 341-439 125-216 (291)
93 PF01556 CTDII: DnaJ C termina 98.9 1.1E-09 2.3E-14 87.6 4.4 50 295-344 27-77 (81)
94 PRK01773 hscB co-chaperone Hsc 98.9 3.5E-09 7.6E-14 96.4 6.9 64 77-140 2-73 (173)
95 TIGR00714 hscB Fe-S protein as 98.8 4.5E-09 9.7E-14 94.5 6.2 53 89-141 3-61 (157)
96 COG5269 ZUO1 Ribosome-associat 98.7 6E-09 1.3E-13 98.3 3.6 71 72-142 38-114 (379)
97 KOG0712 Molecular chaperone (D 98.7 2E-08 4.4E-13 99.4 6.7 105 224-339 145-324 (337)
98 KOG1150 Predicted molecular ch 98.7 1.4E-08 2.9E-13 92.0 4.9 63 75-137 51-115 (250)
99 PRK10266 curved DNA-binding pr 98.6 3.2E-08 7E-13 98.7 6.0 82 343-426 115-211 (306)
100 PLN03165 chaperone protein dna 98.6 4.8E-08 1E-12 81.9 6.0 62 220-293 39-100 (111)
101 KOG0723 Molecular chaperone (D 98.4 4.6E-07 1E-11 74.1 4.6 66 64-132 43-108 (112)
102 KOG0568 Molecular chaperone (D 98.3 5.9E-07 1.3E-11 83.1 4.6 56 77-132 47-103 (342)
103 KOG1789 Endocytosis protein RM 98.2 1.2E-06 2.5E-11 95.7 5.3 55 75-131 1279-1337(2235)
104 TIGR02642 phage_xxxx uncharact 98.1 3.8E-06 8.3E-11 77.0 4.3 48 266-314 100-149 (186)
105 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.9 1.1E-05 2.3E-10 61.8 3.0 44 221-275 14-66 (66)
106 TIGR03835 termin_org_DnaJ term 97.8 3.3E-05 7.1E-10 83.4 5.7 70 77-146 2-71 (871)
107 COG1107 Archaea-specific RecJ- 97.6 3.3E-05 7.1E-10 80.6 3.5 68 223-291 3-80 (715)
108 PLN03165 chaperone protein dna 96.8 0.00097 2.1E-08 56.1 3.2 41 224-279 54-100 (111)
109 KOG3192 Mitochondrial J-type c 96.7 0.002 4.2E-08 56.8 4.4 66 75-140 6-79 (168)
110 COG1107 Archaea-specific RecJ- 96.5 0.0023 5E-08 67.2 4.0 45 239-293 2-67 (715)
111 TIGR02642 phage_xxxx uncharact 96.4 0.0021 4.6E-08 59.1 3.0 30 240-279 100-129 (186)
112 KOG2813 Predicted molecular ch 96.4 0.0033 7.2E-08 61.3 4.1 31 267-300 247-277 (406)
113 COG1076 DjlA DnaJ-domain-conta 95.8 0.0057 1.2E-07 56.0 2.5 53 77-129 113-173 (174)
114 KOG2813 Predicted molecular ch 95.4 0.0071 1.5E-07 59.1 1.7 25 265-292 234-258 (406)
115 COG1076 DjlA DnaJ-domain-conta 94.8 0.021 4.5E-07 52.3 2.7 62 79-140 3-72 (174)
116 KOG0431 Auxilin-like protein a 94.6 0.036 7.8E-07 58.2 4.4 26 88-113 399-424 (453)
117 PF03656 Pam16: Pam16; InterP 94.6 0.075 1.6E-06 46.0 5.5 59 74-135 55-113 (127)
118 KOG0715 Molecular chaperone (D 93.4 0.14 2.9E-06 50.8 5.5 107 198-320 159-270 (288)
119 KOG2824 Glutaredoxin-related p 88.3 0.54 1.2E-05 45.6 3.9 52 222-286 229-280 (281)
120 PF13446 RPT: A repeated domai 85.0 1.5 3.3E-05 32.7 4.1 45 77-131 5-49 (62)
121 PF11833 DUF3353: Protein of u 82.8 2.6 5.7E-05 39.2 5.5 40 86-132 1-40 (194)
122 cd03031 GRX_GRX_like Glutaredo 81.6 1.5 3.3E-05 39.0 3.3 47 222-277 99-145 (147)
123 COG5552 Uncharacterized conser 80.6 5.4 0.00012 30.9 5.5 47 75-121 1-47 (88)
124 KOG2824 Glutaredoxin-related p 80.0 1.7 3.7E-05 42.2 3.3 38 240-292 230-275 (281)
125 PRK14714 DNA polymerase II lar 77.2 1.3 2.8E-05 51.3 1.8 61 211-290 657-720 (1337)
126 PRK04023 DNA polymerase II lar 75.2 1.3 2.8E-05 50.2 1.1 65 205-290 609-674 (1121)
127 PF10041 DUF2277: Uncharacteri 75.1 12 0.00026 29.2 6.0 47 75-121 1-47 (78)
128 TIGR00310 ZPR1_znf ZPR1 zinc f 74.4 16 0.00034 34.0 7.9 75 241-315 2-100 (192)
129 TIGR00630 uvra excinuclease AB 73.8 2.1 4.7E-05 49.1 2.4 32 241-276 738-770 (924)
130 cd03031 GRX_GRX_like Glutaredo 73.3 3 6.5E-05 37.1 2.8 35 240-289 100-143 (147)
131 smart00709 Zpr1 Duplicated dom 72.9 18 0.00039 32.6 7.7 21 295-315 80-100 (160)
132 KOG0724 Zuotin and related mol 72.3 3.4 7.4E-05 41.7 3.3 52 89-140 4-60 (335)
133 PF03833 PolC_DP2: DNA polymer 71.8 1.3 2.7E-05 49.4 0.0 51 222-292 655-705 (900)
134 TIGR03655 anti_R_Lar restricti 65.2 9.6 0.00021 27.5 3.5 37 240-277 2-38 (53)
135 PRK00349 uvrA excinuclease ABC 62.9 5.3 0.00011 46.1 2.7 33 241-277 740-773 (943)
136 PRK05978 hypothetical protein; 60.5 4.1 8.8E-05 36.2 1.0 25 241-272 35-59 (148)
137 COG0178 UvrA Excinuclease ATPa 59.8 8.2 0.00018 43.3 3.3 32 241-276 732-764 (935)
138 COG1198 PriA Primosomal protei 59.2 7.1 0.00015 43.6 2.8 51 221-288 434-484 (730)
139 PRK03564 formate dehydrogenase 58.8 10 0.00022 37.9 3.6 10 222-231 187-196 (309)
140 PRK00635 excinuclease ABC subu 58.1 6 0.00013 48.4 2.1 32 241-276 1609-1641(1809)
141 smart00709 Zpr1 Duplicated dom 57.6 38 0.00081 30.6 6.7 26 363-392 75-100 (160)
142 PRK00564 hypA hydrogenase nick 56.9 31 0.00067 29.3 5.8 31 220-250 69-99 (117)
143 PF09538 FYDLN_acid: Protein o 53.8 7.2 0.00016 32.8 1.4 26 221-246 8-33 (108)
144 PF08774 VRR_NUC: VRR-NUC doma 52.5 16 0.00035 29.7 3.3 34 407-440 62-96 (100)
145 TIGR00630 uvra excinuclease AB 51.9 6.2 0.00013 45.4 0.9 29 266-294 737-774 (924)
146 PF03589 Antiterm: Antitermina 51.0 4.4 9.6E-05 33.2 -0.4 37 241-277 7-44 (95)
147 TIGR00340 zpr1_rel ZPR1-relate 49.4 50 0.0011 29.9 6.1 20 296-315 78-98 (163)
148 PRK00349 uvrA excinuclease ABC 49.4 11 0.00024 43.5 2.4 29 267-295 740-777 (943)
149 PRK14873 primosome assembly pr 49.2 15 0.00033 40.8 3.3 50 221-288 382-431 (665)
150 COG0178 UvrA Excinuclease ATPa 48.3 9.2 0.0002 42.9 1.4 35 217-251 724-765 (935)
151 PF14687 DUF4460: Domain of un 47.2 31 0.00067 29.2 4.2 44 87-130 4-52 (112)
152 PRK14559 putative protein seri 46.9 11 0.00023 41.7 1.7 48 223-287 2-49 (645)
153 PRK12380 hydrogenase nickel in 45.9 43 0.00094 28.2 4.9 29 220-249 68-96 (113)
154 TIGR00595 priA primosomal prot 45.3 15 0.00033 39.4 2.5 51 221-288 212-262 (505)
155 PF14353 CpXC: CpXC protein 44.1 13 0.00029 31.8 1.6 12 266-277 39-50 (128)
156 PF04246 RseC_MucC: Positive r 41.7 34 0.00074 29.5 3.8 22 295-316 42-63 (135)
157 TIGR02300 FYDLN_acid conserved 40.7 15 0.00033 31.6 1.4 26 222-247 9-34 (129)
158 PF07295 DUF1451: Protein of u 40.6 26 0.00057 31.1 2.9 34 236-277 109-142 (146)
159 PF07092 DUF1356: Protein of u 40.3 14 0.00031 35.4 1.2 10 405-414 202-211 (238)
160 PF07709 SRR: Seven Residue Re 39.3 17 0.00036 18.9 0.9 13 118-130 2-14 (14)
161 PRK12336 translation initiatio 38.2 1.3E+02 0.0027 28.2 7.2 13 266-278 120-132 (201)
162 PRK14051 negative regulator Gr 37.9 1E+02 0.0023 25.7 5.7 70 327-397 48-119 (123)
163 PRK05580 primosome assembly pr 37.4 22 0.00048 39.6 2.3 50 222-288 381-430 (679)
164 KOG3442 Uncharacterized conser 37.4 62 0.0014 27.8 4.4 55 77-134 59-113 (132)
165 TIGR00100 hypA hydrogenase nic 35.5 93 0.002 26.3 5.4 8 222-229 70-77 (115)
166 PF13453 zf-TFIIB: Transcripti 35.3 26 0.00057 23.7 1.6 8 266-273 20-27 (41)
167 PF13719 zinc_ribbon_5: zinc-r 35.1 26 0.00057 23.2 1.6 7 266-272 26-32 (37)
168 PF08792 A2L_zn_ribbon: A2L zi 34.8 32 0.00069 22.4 1.8 12 240-251 4-15 (33)
169 PRK03681 hypA hydrogenase nick 34.6 83 0.0018 26.5 4.9 29 221-249 69-97 (114)
170 PF07092 DUF1356: Protein of u 33.9 23 0.0005 34.0 1.5 14 240-253 39-52 (238)
171 PF01155 HypA: Hydrogenase exp 32.0 65 0.0014 27.1 3.9 28 221-249 69-96 (113)
172 KOG2724 Nuclear pore complex c 31.1 45 0.00097 34.6 3.1 84 328-412 370-455 (487)
173 PF12434 Malate_DH: Malate deh 30.9 55 0.0012 20.3 2.3 17 91-107 10-26 (28)
174 PF14205 Cys_rich_KTR: Cystein 30.8 71 0.0015 23.4 3.2 13 239-251 4-16 (55)
175 PF03367 zf-ZPR1: ZPR1 zinc-fi 29.9 51 0.0011 29.7 3.0 26 363-392 76-102 (161)
176 COG5349 Uncharacterized protei 29.2 16 0.00035 31.2 -0.3 11 241-252 23-33 (126)
177 PRK00635 excinuclease ABC subu 29.0 20 0.00043 44.1 0.3 29 266-294 1608-1645(1809)
178 PF09862 DUF2089: Protein of u 28.9 47 0.001 28.2 2.4 18 268-285 1-18 (113)
179 smart00440 ZnF_C2C2 C2C2 Zinc 28.4 90 0.002 21.1 3.3 32 241-272 2-35 (40)
180 PRK11032 hypothetical protein; 28.0 57 0.0012 29.4 2.9 15 93-107 3-17 (160)
181 KOG0315 G-protein beta subunit 27.8 59 0.0013 31.6 3.1 32 350-381 18-51 (311)
182 PF01096 TFIIS_C: Transcriptio 27.6 79 0.0017 21.2 2.9 32 241-272 2-35 (39)
183 PF07739 TipAS: TipAS antibiot 27.5 1.4E+02 0.003 24.6 5.1 52 84-143 51-104 (118)
184 cd02639 R3H_RRM R3H domain of 27.1 63 0.0014 24.1 2.6 23 410-432 17-39 (60)
185 PF01846 FF: FF domain; Inter 27.1 1.5E+02 0.0033 20.6 4.5 47 93-141 1-51 (51)
186 cd01388 SOX-TCF_HMG-box SOX-TC 26.7 1.5E+02 0.0033 22.3 4.9 41 96-140 14-54 (72)
187 PRK12336 translation initiatio 25.8 3.1E+02 0.0067 25.6 7.6 34 219-252 95-132 (201)
188 TIGR01562 FdhE formate dehydro 25.2 59 0.0013 32.5 2.8 21 267-287 212-232 (305)
189 PF12991 DUF3875: Domain of un 24.5 79 0.0017 23.0 2.5 24 403-426 26-51 (54)
190 PRK13130 H/ACA RNA-protein com 24.4 58 0.0013 24.0 1.9 9 266-274 18-26 (56)
191 COG3635 Predicted phosphoglyce 24.3 1.4E+02 0.003 30.8 5.2 134 298-438 48-207 (408)
192 COG2260 Predicted Zn-ribbon RN 23.4 51 0.0011 24.4 1.4 10 266-275 18-27 (59)
193 PF12387 Peptidase_C74: Pestiv 23.1 47 0.001 30.1 1.4 26 223-252 163-188 (200)
194 PF04216 FdhE: Protein involve 23.0 34 0.00073 33.8 0.6 10 266-275 212-221 (290)
195 cd04036 C2_cPLA2 C2 domain pre 23.0 4.2E+02 0.0092 21.6 7.5 31 330-363 65-95 (119)
196 PRK00464 nrdR transcriptional 23.0 88 0.0019 28.0 3.2 34 241-274 2-37 (154)
197 PRK00398 rpoP DNA-directed RNA 23.0 61 0.0013 22.4 1.7 8 266-273 22-29 (46)
198 PRK05580 primosome assembly pr 22.6 52 0.0011 36.7 2.1 43 220-275 388-431 (679)
199 PF08273 Prim_Zn_Ribbon: Zinc- 22.4 48 0.001 22.6 1.1 11 241-251 5-15 (40)
200 PRK00762 hypA hydrogenase nick 22.4 2.4E+02 0.0051 24.2 5.7 11 220-231 68-78 (124)
201 PF13717 zinc_ribbon_4: zinc-r 22.3 60 0.0013 21.4 1.5 9 223-231 3-11 (36)
202 PF08271 TF_Zn_Ribbon: TFIIB z 22.3 66 0.0014 21.9 1.8 9 241-249 2-10 (43)
203 PRK14714 DNA polymerase II lar 22.2 52 0.0011 38.9 1.9 34 239-287 667-700 (1337)
204 PF07191 zinc-ribbons_6: zinc- 22.2 1.1E+02 0.0024 23.7 3.1 41 224-278 3-43 (70)
205 cd00084 HMG-box High Mobility 21.9 2.3E+02 0.0049 20.2 4.9 42 95-140 12-53 (66)
206 PF09862 DUF2089: Protein of u 21.3 62 0.0014 27.4 1.8 21 242-274 1-21 (113)
207 PF09855 DUF2082: Nucleic-acid 21.1 1.3E+02 0.0027 22.8 3.2 7 266-272 37-43 (64)
208 PF10365 DUF2436: Domain of un 20.9 3.1E+02 0.0067 24.2 5.9 28 370-397 96-131 (161)
209 COG0375 HybF Zn finger protein 20.9 2.5E+02 0.0055 23.8 5.3 9 222-230 70-78 (115)
210 cd01390 HMGB-UBF_HMG-box HMGB- 20.5 2.5E+02 0.0054 20.2 4.9 40 98-141 15-54 (66)
211 PF10080 DUF2318: Predicted me 20.5 53 0.0012 27.3 1.2 23 224-246 37-59 (102)
212 COG1198 PriA Primosomal protei 20.4 60 0.0013 36.4 1.9 41 221-274 443-484 (730)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-93 Score=706.79 Aligned_cols=347 Identities=46% Similarity=0.821 Sum_probs=317.5
Q ss_pred ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC
Q 013277 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG 152 (446)
Q Consensus 74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~ 152 (446)
++.+|||+||||+++||++|||+|||+||++||||+|+ +++|+++|++|+|||||||||+||++||+||+++++++..+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 46789999999999999999999999999999999999 78999999999999999999999999999999998733222
Q ss_pred C--CCCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccC
Q 013277 153 G--SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (446)
Q Consensus 153 ~--~~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G 230 (446)
+ .++|..++.|+|++||+++.+ +++++.++.++.|++++|+|||+|||+|+++++.+++.+.|+.|+|
T Consensus 81 g~g~~~fgg~~~DIF~~~FgGg~~----------~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~G 150 (371)
T COG0484 81 GFGFGGFGGDFGDIFEDFFGGGGG----------GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHG 150 (371)
T ss_pred CCCcCCCCCCHHHHHHHhhcCCCc----------ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCC
Confidence 2 222333678899999962211 1122334678999999999999999999999999999999999999
Q ss_pred CccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCE
Q 013277 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (446)
Q Consensus 231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~ 310 (446)
+|++.+....+|++|+|+|++...+++ |+|+++++|+.|+|+|++++++|.+|+|.|++.+.++|+|+||+|+.+|++
T Consensus 151 sGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ 228 (371)
T COG0484 151 SGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDR 228 (371)
T ss_pred CCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCE
Confidence 999999999999999999999887766 889999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEE
Q 013277 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL 390 (446)
Q Consensus 311 i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l 390 (446)
|++.|+|+++.+|+++|||||.|.|++|+.|+|+|+||+++++|++.+|+||++++|+||||.++|+||+++|+|++++|
T Consensus 229 ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl 308 (371)
T COG0484 229 IRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRL 308 (371)
T ss_pred EEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEE
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhhc
Q 013277 391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQLN 433 (446)
Q Consensus 391 ~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~~ 433 (446)
+|+|||..++ ..+|||||+++|++|++||.+|+++|++|...
T Consensus 309 ~gkG~p~~~~-~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~ 350 (371)
T COG0484 309 RGKGMPKLRS-GGRGDLYVRVKVETPKNLSDEQKELLEEFAKS 350 (371)
T ss_pred cCCCccccCC-CCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 9999998765 45799999999999999999999999998763
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-82 Score=645.95 Aligned_cols=344 Identities=34% Similarity=0.640 Sum_probs=302.2
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC--CC
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--GG 153 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~--~~ 153 (446)
.+|||++|||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||+||+.||+||+++++.+.+ ++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~ 82 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence 4799999999999999999999999999999999988889999999999999999999999999999887653111 11
Q ss_pred CCCCc-----------CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccce
Q 013277 154 SSAYT-----------TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL 222 (446)
Q Consensus 154 ~~~~~-----------~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~ 222 (446)
.+++. .++.|+|++||+++ + + +.....++.|++++|.|||+|+|+|+++++.+++.
T Consensus 83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg----~-------~--~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~ 149 (372)
T PRK14296 83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSN----K-------S--DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLL 149 (372)
T ss_pred CCccccccccccccccccchhhhhhhcCCC----c-------c--CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeee
Confidence 01110 01223444444310 0 0 01123468899999999999999999999999999
Q ss_pred eecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeC
Q 013277 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP 302 (446)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip 302 (446)
+.|..|+|+|........+|+.|+|+|.++...+.++.++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||
T Consensus 150 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip 229 (372)
T PRK14296 150 TNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIP 229 (372)
T ss_pred eccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEEC
Confidence 99999999999988888999999999999887777665566668999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccC-CcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCC
Q 013277 303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRD-GIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG 381 (446)
Q Consensus 303 ~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~-g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~ 381 (446)
+|+++|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+ |+|||++++|||+|||+|+++.|+||||+++|+||++
T Consensus 230 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~ 309 (372)
T PRK14296 230 KGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKS 309 (372)
T ss_pred CCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCc
Confidence 999999999999999998777889999999999999999995 8999999999999999999999999999988999999
Q ss_pred CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 382 ~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
++||++++|+|+|||...+++.+|||||+|+|.||+.|+++|+++|++|+.
T Consensus 310 t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~ 360 (372)
T PRK14296 310 INSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYE 360 (372)
T ss_pred cCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 999999999999999665555689999999999999999999999999874
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.2e-80 Score=627.55 Aligned_cols=341 Identities=31% Similarity=0.586 Sum_probs=296.1
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCC
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~ 154 (446)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|++||+||+++++.+.+ +.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~-~~ 80 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA-SQ 80 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC-Cc
Confidence 579999999999999999999999999999999998 4678999999999999999999999999999987653211 11
Q ss_pred CCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCccc
Q 013277 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (446)
Q Consensus 155 ~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~ 234 (446)
+.| .++|+.|++||+..||+ ++. +. .+....++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+|+|..
T Consensus 81 ~~~-~~~f~~~~~~F~~~fg~-g~~-----~~-~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~ 152 (369)
T PRK14288 81 SDF-SDFFEDLGSFFEDAFGF-GAR-----GS-KRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAK 152 (369)
T ss_pred ccc-ccchhhHHHHHHhhcCC-CCc-----cc-CcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccC
Confidence 112 13344344455432221 000 00 11123468899999999999999999999999999999999999998
Q ss_pred cCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEc
Q 013277 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (446)
Q Consensus 235 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (446)
.. ...+|+.|+|+|.++... |++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|++|+|+
T Consensus 153 ~~-~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~ 227 (369)
T PRK14288 153 DK-ALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLK 227 (369)
T ss_pred CC-CCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEc
Confidence 76 578999999999876542 7777778999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCcEEEEccC
Q 013277 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKK 393 (446)
Q Consensus 315 g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~~~~l~g~ 393 (446)
|+|++.+ ++.+|||||+|+|++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ ++|+||++++||++++|+|+
T Consensus 228 g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~ 306 (369)
T PRK14288 228 NKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNE 306 (369)
T ss_pred cCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCC
Confidence 9999976 578999999999999999999999999999999999999999999999997 68999999999999999999
Q ss_pred CCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 394 GAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 394 G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
|||..+. ..+|||||+|+|.||++|+++|+++|++|+.
T Consensus 307 G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~ 344 (369)
T PRK14288 307 GVKHPES-SYRGSLIVELQVIYPKSLNKEQQELLEKLHA 344 (369)
T ss_pred CCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9997653 4579999999999999999999999999874
No 4
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8e-80 Score=627.33 Aligned_cols=345 Identities=43% Similarity=0.796 Sum_probs=309.2
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC---
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG--- 152 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~--- 152 (446)
..|||+||||+++||.+|||+|||+||++||||+|+++.+.++|++|++||++|+||.+|++||+||+++++.+.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 46999999999999999999999999999999999988899999999999999999999999999999887643211
Q ss_pred CCCCCc-----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeeccc
Q 013277 153 GSSAYT-----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (446)
Q Consensus 153 ~~~~~~-----~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~ 227 (446)
+.++|. .++.|+|++||+++ + +. +......++.|+.+.|.|||||+|+|+++++.+.+.+.|+.
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~--~--~~-------~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~ 151 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGG--G--AR-------RNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHT 151 (380)
T ss_pred CCCCccccccccchhhHHHHHhCcc--c--cc-------cCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCC
Confidence 111111 23446777777631 0 00 00112346889999999999999999999999999999999
Q ss_pred ccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCC
Q 013277 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (446)
Q Consensus 228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~ 307 (446)
|+|+|........+|+.|+|+|.++...++++|++++..+|+.|+|+|++++++|..|.|.|.+.+.++++|.||+|+++
T Consensus 152 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~ 231 (380)
T PRK14276 152 CNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVET 231 (380)
T ss_pred CcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccC
Confidence 99999998888899999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcE
Q 013277 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDV 387 (446)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~ 387 (446)
|++|+|+|+|++.+++..+|||||+|+|++|+.|+|+|+||+++++|||.|||+|++++|+|+||+++|+||+++++|++
T Consensus 232 G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~ 311 (380)
T PRK14276 232 GQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKK 311 (380)
T ss_pred CcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCE
Confidence 99999999999987777789999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 388 LVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 388 ~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus 312 ~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~ 355 (380)
T PRK14276 312 FRLRGKGAPKLRG-GGNGDQHVTVNIVTPTKLNDAQKEALKAFAK 355 (380)
T ss_pred EEECCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999998654 3579999999999999999999999999874
No 5
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-79 Score=625.80 Aligned_cols=345 Identities=45% Similarity=0.823 Sum_probs=309.1
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCC-
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS- 154 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~- 154 (446)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||+||+++++.+.+++.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 4699999999999999999999999999999999988889999999999999999999999999999987764321110
Q ss_pred --CCCc--CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccC
Q 013277 155 --SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (446)
Q Consensus 155 --~~~~--~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G 230 (446)
..|. .++.|+|++||+++ + . ........++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+|
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~--~--~-------~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G 151 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGG--G--R-------RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHG 151 (376)
T ss_pred CCCCccccccchhhHHHHhCCc--c--c-------cCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCC
Confidence 0111 13457788887631 1 0 000112346889999999999999999999999999999999999
Q ss_pred CccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCE
Q 013277 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (446)
Q Consensus 231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~ 310 (446)
+|........+|+.|+|+|.++...++++|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++|++
T Consensus 152 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~ 231 (376)
T PRK14280 152 SGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQ 231 (376)
T ss_pred cccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcE
Confidence 99998888899999999999988888899999988999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEE
Q 013277 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL 390 (446)
Q Consensus 311 i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l 390 (446)
|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+|+||++.|+||+++++|++++|
T Consensus 232 i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i 311 (376)
T PRK14280 232 IRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRL 311 (376)
T ss_pred EEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEE
Confidence 99999999987777899999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 391 ~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
+|+|||..+. ..+|||||+|+|.||+.||++|+++|++|..
T Consensus 312 ~g~G~p~~~~-~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~ 352 (376)
T PRK14280 312 KGKGVPNVRG-YGQGDQYVVVRVVTPTKLTDRQKELLREFAE 352 (376)
T ss_pred cCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999997654 3689999999999999999999999999874
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.2e-80 Score=625.74 Aligned_cols=343 Identities=43% Similarity=0.777 Sum_probs=307.6
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCC--
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG-- 153 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~-- 153 (446)
.+|||+||||+++|+.+|||+|||+||++||||+|+++.+.++|++|++||++|+||.+|+.||+||+++++.+.++.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~ 83 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI 83 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence 579999999999999999999999999999999998888999999999999999999999999999998765321110
Q ss_pred --CCCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCC
Q 013277 154 --SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (446)
Q Consensus 154 --~~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~ 231 (446)
.+.+ .++.|+|++||+++ + + . ++....++.|++++|.|||+|+|+|+++++.+++.+.|+.|+|+
T Consensus 84 ~~~~~~-~~~~d~f~~~Fgg~--~--~-----~---~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~ 150 (377)
T PRK14298 84 FRGADF-GGFGDIFEMFFGGG--G--R-----R---GRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGT 150 (377)
T ss_pred cccCCc-CcchhhhHhhhcCC--C--c-----c---CCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCC
Confidence 0111 23346777777631 0 0 0 01123468899999999999999999999999999999999999
Q ss_pred ccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEE
Q 013277 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (446)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i 311 (446)
|...+....+|+.|+|+|.++...+.++|++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|.||||+++|++|
T Consensus 151 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i 230 (377)
T PRK14298 151 GAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRL 230 (377)
T ss_pred cccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEE
Confidence 99988888999999999999888888888888889999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEc
Q 013277 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA 391 (446)
Q Consensus 312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~ 391 (446)
+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+|+||++.|+||+++++|++++|+
T Consensus 231 ~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~ 310 (377)
T PRK14298 231 KLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLK 310 (377)
T ss_pred EEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEEC
Confidence 99999999877788999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 392 KKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 392 g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|..
T Consensus 311 g~G~p~~~~-~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~ 350 (377)
T PRK14298 311 DKGMPRLHG-HGKGDQLVKVIVKTPTKLTQEQKELLREFDE 350 (377)
T ss_pred CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 999997654 3589999999999999999999999999873
No 7
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.6e-80 Score=624.47 Aligned_cols=344 Identities=42% Similarity=0.805 Sum_probs=308.7
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC-CC
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS 154 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~-~~ 154 (446)
..|||++|||+++|+.+|||+|||+||++||||+|++++++++|++|++||++|+||.+|+.||+||+++++.+.++ +.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA 82 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence 46999999999999999999999999999999999877889999999999999999999999999999876532211 11
Q ss_pred CCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCccc
Q 013277 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (446)
Q Consensus 155 ~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~ 234 (446)
++| .++.|+|++||+++ + +. + ......++.|++++|.|||+|+|+|+++++.+++.+.|+.|+|+|..
T Consensus 83 ~~f-~~~~d~f~~~fgg~--~--~~-----~--~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~ 150 (371)
T PRK14287 83 GDF-GGFSDIFDMFFGGG--G--GR-----R--NPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAK 150 (371)
T ss_pred ccc-cchHHHHHhhhccc--c--CC-----C--CCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccC
Confidence 122 12447788888631 0 00 0 01113468899999999999999999999999999999999999999
Q ss_pred cCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEc
Q 013277 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (446)
Q Consensus 235 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (446)
......+|+.|+|+|.++...++++|++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|++|+|+
T Consensus 151 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 230 (371)
T PRK14287 151 PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS 230 (371)
T ss_pred CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEc
Confidence 88888999999999999988899999999989999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEccCC
Q 013277 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG 394 (446)
Q Consensus 315 g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g~G 394 (446)
|+|++.++++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|++++|+|+||+++|+||+++++|++++|+|+|
T Consensus 231 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G 310 (371)
T PRK14287 231 GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKG 310 (371)
T ss_pred cCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCC
Confidence 99999877778999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 395 APKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 395 ~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
||..++ ..+|||||+|+|.+|+.|+.+|+++|++|..
T Consensus 311 ~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~ 347 (371)
T PRK14287 311 VPNVHG-RGQGDQHVQVRVVTPKNLTEKEKELMREFAG 347 (371)
T ss_pred ccCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 997654 3579999999999999999999999999873
No 8
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.2e-80 Score=628.08 Aligned_cols=349 Identities=41% Similarity=0.786 Sum_probs=308.3
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeecc-CC
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GG 152 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~-~~ 152 (446)
...|||+||||+++|+.+|||+|||+||++||||+|++ +.++++|++|++||+||+||.+|+.||+||+++++.+. ++
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ 82 (386)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence 35799999999999999999999999999999999984 67889999999999999999999999999988775321 10
Q ss_pred C-C--CC-----Cc---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccc
Q 013277 153 G-S--SA-----YT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSH 221 (446)
Q Consensus 153 ~-~--~~-----~~---~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~ 221 (446)
+ . ++ +. .++.|+|++||+..+|+. + ..+.....++.|+++.|.|||+|+|+|+++++.+++
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~------~--~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r 154 (386)
T PRK14277 83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTG------R--RRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVER 154 (386)
T ss_pred CCcCCCCccccCccccccchhHHHHHhhcccccCC------C--cCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEe
Confidence 0 0 11 11 122356777776433210 0 001112347889999999999999999999999999
Q ss_pred eeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEe
Q 013277 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKV 301 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~I 301 (446)
.+.|+.|+|+|........+|+.|+|+|.++...++++|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.|
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I 234 (386)
T PRK14277 155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNI 234 (386)
T ss_pred eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEec
Confidence 99999999999998888899999999999998889999999998999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCC
Q 013277 302 PPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG 381 (446)
Q Consensus 302 p~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~ 381 (446)
|+|+++|++|+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|+++.|+||||+++|.||++
T Consensus 235 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g 314 (386)
T PRK14277 235 PAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEG 314 (386)
T ss_pred CCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCC
Confidence 99999999999999999977677889999999999999999999999999999999999999999999999988999999
Q ss_pred CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 382 ~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
+++|++++|+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus 315 ~~~g~~~ri~g~G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~ 364 (386)
T PRK14277 315 TQTGTKFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEK 364 (386)
T ss_pred CCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 9999999999999998654 3589999999999999999999999999873
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-79 Score=622.90 Aligned_cols=345 Identities=43% Similarity=0.791 Sum_probs=303.0
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC-C
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G 153 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~-~ 153 (446)
..|||++|||+++|+.+|||+|||+||++||||+|++ +.+.++|++|++||+||+||.+|+.||+||+++++.+.++ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 4799999999999999999999999999999999974 6788999999999999999999999999999877532111 1
Q ss_pred CCC---Cc---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeeccc
Q 013277 154 SSA---YT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (446)
Q Consensus 154 ~~~---~~---~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~ 227 (446)
.++ +. .++.|+|++||+++.++. +. ..++....++.|++++|.|||||+|+|+++++.+++.+.|+.
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~----~~---~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~ 155 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGG----SG---GGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVD 155 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCC----Cc---ccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCC
Confidence 111 11 234477888887421110 00 001112357889999999999999999999999999999999
Q ss_pred ccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCC
Q 013277 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (446)
Q Consensus 228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~ 307 (446)
|+|+|........+|+.|+|+|.++.. .|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++
T Consensus 156 C~G~G~~~~~~~~~C~~C~G~G~v~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~ 231 (372)
T PRK14286 156 CNGSGASKGSSPTTCPDCGGSGQIRRT----QGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVET 231 (372)
T ss_pred CcCCCcCCCCCCccCCCCcCeEEEEEE----eceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCC
Confidence 999999988888999999999988664 3788877999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCc
Q 013277 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGD 386 (446)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~ 386 (446)
|++|+|+|+|++.+++..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+ ++|+||+++++|+
T Consensus 232 G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~ 311 (372)
T PRK14286 232 GSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQ 311 (372)
T ss_pred CCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCc
Confidence 999999999999887777899999999999999999999999999999999999999999999997 6899999999999
Q ss_pred EEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 387 VLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 387 ~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
+++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus 312 ~~ri~G~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~ 356 (372)
T PRK14286 312 VFRLKGHGMPYLGA-YGKGDQHVIVKIEIPKKITRRQRELIEEFAR 356 (372)
T ss_pred EEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999998654 3589999999999999999999999999874
No 10
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.1e-79 Score=621.29 Aligned_cols=345 Identities=41% Similarity=0.726 Sum_probs=305.6
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeecc-CCCC
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GGGS 154 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~-~~~~ 154 (446)
.+|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|+.||+||++....+. +++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~ 81 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF 81 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence 479999999999999999999999999999999998888899999999999999999999999999986332111 0111
Q ss_pred C-CCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCcc
Q 013277 155 S-AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA 233 (446)
Q Consensus 155 ~-~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~ 233 (446)
+ .| .++.|+|++||+++ ++ + ........++.|+++.|.|||+|+|+|+++++.+++.+.|+.|+|+|.
T Consensus 82 ~~~f-~~~~d~f~~ffgg~-g~--~-------~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~ 150 (378)
T PRK14278 82 GGGF-GGLGDVFEAFFGGG-AA--S-------RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGT 150 (378)
T ss_pred CcCc-CchhHHHHHHhCCC-CC--C-------CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccC
Confidence 1 11 23447788888631 10 0 000112346889999999999999999999999999999999999999
Q ss_pred ccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEE
Q 013277 234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313 (446)
Q Consensus 234 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l 313 (446)
+......+|+.|+|+|.++...++.+|++++..+|+.|+|+|+++.++|..|+|.|.+.+.++++|.||||+++|++|+|
T Consensus 151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 230 (378)
T PRK14278 151 AGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRL 230 (378)
T ss_pred CCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEE
Confidence 98888899999999999988888889999988999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEecc-CCeEEEEeCCCCCCCcEEEEcc
Q 013277 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV-EGISELQVPPGTQPGDVLVLAK 392 (446)
Q Consensus 314 ~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~l-dG~~~l~i~~~~~~g~~~~l~g 392 (446)
+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+|+ ++.++|+||+++++|++++|+|
T Consensus 231 ~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g 310 (378)
T PRK14278 231 AAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRG 310 (378)
T ss_pred ccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECC
Confidence 999999887778899999999999999999999999999999999999999999999 5567899999999999999999
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 393 KGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 393 ~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
+|||..+. ..+|||||+|+|.||+.|+++|+++|++++.
T Consensus 311 ~G~p~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~ 349 (378)
T PRK14278 311 RGMPHLRS-GGRGDLHAHVEVVVPTRLDHEDIELLRELKA 349 (378)
T ss_pred CCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 99997653 4689999999999999999999999999873
No 11
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5e-79 Score=621.89 Aligned_cols=347 Identities=45% Similarity=0.829 Sum_probs=308.7
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC---
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--- 151 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~--- 151 (446)
..|||++|||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||++|+||.+|+.||+||+++++.+.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 4699999999999999999999999999999999974 578899999999999999999999999999988753211
Q ss_pred CCCCCCc----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeeccc
Q 013277 152 GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (446)
Q Consensus 152 ~~~~~~~----~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~ 227 (446)
++.+++. .++.|+|++||++++++ . + +++....++.|++++|.|||||+|+|+++++.+++.+.|+.
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~---~-----~-~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 153 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGGFGS---S-----S-RRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCET 153 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccCccc---c-----c-cccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCC
Confidence 1111121 13447788888742111 0 0 01112346889999999999999999999999999999999
Q ss_pred ccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCC
Q 013277 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (446)
Q Consensus 228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~ 307 (446)
|+|+|...+....+|+.|+|+|.++...++++|++++..+|+.|+|+|.++.+.|..|+|.|.+.+.++++|.||+|+++
T Consensus 154 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~ 233 (380)
T PRK14297 154 CNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDT 233 (380)
T ss_pred cccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCC
Confidence 99999998888899999999999988888899999988999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcE
Q 013277 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDV 387 (446)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~ 387 (446)
|++|+|+|+|++.+.+..+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|++++|+|+||+++|+||+++++|++
T Consensus 234 G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~ 313 (380)
T PRK14297 234 GNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTV 313 (380)
T ss_pred CcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCE
Confidence 99999999999987777899999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 388 LVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 388 ~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus 314 ~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~ 357 (380)
T PRK14297 314 FRLKGKGVPRVNS-TGRGNQYVTVIVDIPKKLNSKQKEALTMFME 357 (380)
T ss_pred EEEcCCCcCCCCC-CCCCcEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 9999999997653 4689999999999999999999999999875
No 12
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=5.6e-79 Score=624.40 Aligned_cols=334 Identities=32% Similarity=0.579 Sum_probs=296.4
Q ss_pred ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCC
Q 013277 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG 153 (446)
Q Consensus 74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~ 153 (446)
+...|||+||||+++||.+|||+|||+||++||||+|++ .++|++|++||+||+||.+|+.||+||++++..+.
T Consensus 25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~--- 98 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE--- 98 (421)
T ss_pred ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC---
Confidence 336799999999999999999999999999999999853 58999999999999999999999999988765321
Q ss_pred CCCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCcc
Q 013277 154 SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA 233 (446)
Q Consensus 154 ~~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~ 233 (446)
+ ..++.|+|+.||+++ + . +....++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.
T Consensus 99 -~--~~d~~d~f~~~Fggg--~----------~--~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~ 161 (421)
T PTZ00037 99 -Q--PADASDLFDLIFGGG--R----------K--PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGG 161 (421)
T ss_pred -C--CcchhhhHHHhhccc--c----------c--cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCC
Confidence 1 134567888888631 0 0 011246889999999999999999999999999999999999998
Q ss_pred ccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec--eeeeecCCceEEEEeeEEEEEeCCCCCCCCEE
Q 013277 234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (446)
Q Consensus 234 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i 311 (446)
... ...+|+.|+|+|.++...++++.++++..+|+.|+|+|+++. ++|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus 162 ~~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I 240 (421)
T PTZ00037 162 PKD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKI 240 (421)
T ss_pred CCC-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEE
Confidence 654 578999999999987776665533455589999999999986 89999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCC--CCCCcEE
Q 013277 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVL 388 (446)
Q Consensus 312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~--~~~g~~~ 388 (446)
+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||+++++|+|+|||+|+++.|+||||+ +.|+||++ ++||+++
T Consensus 241 ~~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~ 319 (421)
T PTZ00037 241 TFHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIK 319 (421)
T ss_pred EEecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEE
Confidence 9999999976 578999999999999999999999999999999999999999999999997 68999988 9999999
Q ss_pred EEccCCCCCCCCCCCCCCEEEEEEEEcC--CCCCcchHHHHHHHhh
Q 013277 389 VLAKKGAPKLNKPSIRGDHLFTVKVTIP--NRIRYVYSPSLTIIQL 432 (446)
Q Consensus 389 ~l~g~G~P~~~~~~~~GdL~v~~~v~~P--~~ls~~~~~~l~~l~~ 432 (446)
+|+|+|||..+++..+|||||+|+|.|| +.||++|+++|++|+.
T Consensus 320 ~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~ 365 (421)
T PTZ00037 320 VINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFP 365 (421)
T ss_pred EeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhcc
Confidence 9999999987655578999999999999 9999999999999875
No 13
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.8e-79 Score=621.52 Aligned_cols=352 Identities=37% Similarity=0.660 Sum_probs=295.7
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC--
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-- 151 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-- 151 (446)
+.+|||+||||+++|+.+|||+|||+||++||||+|+ ++.+.++|++|++||+||+||+||+.||+||+++...+..
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~ 86 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR 86 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence 4689999999999999999999999999999999997 4578999999999999999999999999999743221110
Q ss_pred -----CCCCCCc-------CCCcCccccccCCCCCCC----CCCCCCCcccccccccccCCceeEeeeeeccccccccee
Q 013277 152 -----GGSSAYT-------TNPFDLFETFFGPSMGGF----PGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEK 215 (446)
Q Consensus 152 -----~~~~~~~-------~~~~d~F~~fFg~~~g~~----~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k 215 (446)
++.++|. .++.++|+..+++..++| +++++.+.+..+.....++.|++++|.|+|+|+|+|+++
T Consensus 87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~ 166 (392)
T PRK14279 87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTM 166 (392)
T ss_pred cccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEE
Confidence 0111111 122222221111111111 111110000011122357889999999999999999999
Q ss_pred eeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEee
Q 013277 216 EFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKK 295 (446)
Q Consensus 216 ~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~ 295 (446)
++.+++.+.|+.|+|+|........+|+.|+|+|.++... |++++..+|+.|+|+|+++.+.|..|.|.|.+.+.+
T Consensus 167 ~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~ 242 (392)
T PRK14279 167 PLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTR 242 (392)
T ss_pred EEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEee
Confidence 9999999999999999999888889999999999987643 677777999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEE
Q 013277 296 NIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISE 375 (446)
Q Consensus 296 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~ 375 (446)
+++|.||+|+++|++|+|+|+|++.+++..+|||||+|++++|+.|+|+|+||+++++|+|.||++|++++|+|+||+++
T Consensus 243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~ 322 (392)
T PRK14279 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVG 322 (392)
T ss_pred eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEE
Confidence 99999999999999999999999988777889999999999999999999999999999999999999999999999989
Q ss_pred EEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 376 l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
|+||+++++|++++|+|+|||... ..+|||||+|+|.||+.|+++|+++|++|..
T Consensus 323 v~Ip~g~~~g~~iri~g~G~p~~~--~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~ 377 (392)
T PRK14279 323 VKVPAGTADGRILRVRGRGVPKRS--GGAGDLLVTVKVAVPPNLDGAAAEALEAYAE 377 (392)
T ss_pred EEECCCCCCCCEEEECCCCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999643 4689999999999999999999999999875
No 14
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.9e-78 Score=616.47 Aligned_cols=355 Identities=41% Similarity=0.728 Sum_probs=305.1
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC-CC
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG 153 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-~~ 153 (446)
..|||+||||+++|+.+|||+|||+||++||||++++ +.+.++|++|++||++|+||.+|+.||+||+++++.... ++
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 4699999999999999999999999999999999974 568899999999999999999999999999987753211 11
Q ss_pred CCCC---cCCCcCc---cccccCCCCCC-------CCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeecc
Q 013277 154 SSAY---TTNPFDL---FETFFGPSMGG-------FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELS 220 (446)
Q Consensus 154 ~~~~---~~~~~d~---F~~fFg~~~g~-------~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~ 220 (446)
.++| ..++.|+ |++||+++.+. |.++++++....++....++.|+++.|.|||||+|+|+++++.++
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~ 161 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence 1111 1122233 45778742110 000000000000111124688999999999999999999999999
Q ss_pred ceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEE
Q 013277 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK 300 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~ 300 (446)
+.+.|+.|+|+|.... ...+|+.|+|+|.+....++.+|++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|+
T Consensus 162 r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~ 240 (397)
T PRK14281 162 KQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVT 240 (397)
T ss_pred eeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEe
Confidence 9999999999999876 578999999999998888889999998899999999999999999999999999999999999
Q ss_pred eCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCC
Q 013277 301 VPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPP 380 (446)
Q Consensus 301 Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~ 380 (446)
||+|+++|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|++++|+|+||++.|+||+
T Consensus 241 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~ 320 (397)
T PRK14281 241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPA 320 (397)
T ss_pred cCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCC
Confidence 99999999999999999998877789999999999999999999999999999999999999999999999998899999
Q ss_pred CCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 381 GTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 381 ~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
++++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus 321 g~~~G~~~ri~g~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~ 371 (397)
T PRK14281 321 GTQPETMLRIPGKGIGHLRG-SGRGDQYVRVNVFVPKEVSHQDKELLKELKK 371 (397)
T ss_pred ccCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 99999999999999997654 4689999999999999999999999999874
No 15
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-77 Score=608.54 Aligned_cols=350 Identities=42% Similarity=0.762 Sum_probs=305.7
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC--
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-- 151 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-- 151 (446)
.+|||++|||+++|+.+|||+|||+||++||||+|+. +.+.++|++|++||+||+||.+|+.||+||++++.....
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 5799999999999999999999999999999999974 468899999999999999999999999999877542110
Q ss_pred CCCCCC-cC------CC--cCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccce
Q 013277 152 GGSSAY-TT------NP--FDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL 222 (446)
Q Consensus 152 ~~~~~~-~~------~~--~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~ 222 (446)
++.+++ .. ++ .|+|++||+++ ++ + ..++....++.|+++.|.|||+|+|+|+++++.+++.
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~----~~----~--~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~ 152 (369)
T PRK14282 83 ESGGGFFEDIFKDFENIFNRDIFDIFFGER----RT----Q--EEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRY 152 (369)
T ss_pred CCCCcccccccccccccccchhhhHhhccc----CC----c--ccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeec
Confidence 111111 10 11 14555555421 00 0 0011223568999999999999999999999999999
Q ss_pred eecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeC
Q 013277 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP 302 (446)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip 302 (446)
+.|+.|+|+|........+|+.|+|+|.++...++++|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||
T Consensus 153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip 232 (369)
T PRK14282 153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIP 232 (369)
T ss_pred ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeC
Confidence 99999999999988888999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCC
Q 013277 303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG 381 (446)
Q Consensus 303 ~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~ 381 (446)
+|+++|++|+|+|+|++++.++.+|||||+|++++|+.|+|+|+||+++++|||.||++|++++|+|+||+ ++|+||++
T Consensus 233 ~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g 312 (369)
T PRK14282 233 AGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG 312 (369)
T ss_pred CCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC
Confidence 99999999999999999887788999999999999999999999999999999999999999999999997 68999999
Q ss_pred CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh-ccch
Q 013277 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL-NSVI 436 (446)
Q Consensus 382 ~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~-~~~~ 436 (446)
+++|++++|+|+|||..+. ..+|||||+|+|.+|+.|+.+|+++|++|+. .+|.
T Consensus 313 ~~~g~~iri~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~~~~ 367 (369)
T PRK14282 313 TQPETVFRLKGKGLPNMRY-GRRGDLIVNVHVEIPKRLSREERKLLKELAKKRGVT 367 (369)
T ss_pred cCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhcCCc
Confidence 9999999999999997543 4589999999999999999999999998873 4443
No 16
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-77 Score=608.25 Aligned_cols=342 Identities=33% Similarity=0.661 Sum_probs=300.5
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC-C
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G 153 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~-~ 153 (446)
.+|||++|||+++||.+|||+|||+||++||||+|+. +.+.++|++|++||+||+||.+|+.||+||+++++.+.+. +
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 4799999999999999999999999999999999974 5688999999999999999999999999999877532110 1
Q ss_pred -CCCC---c---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecc
Q 013277 154 -SSAY---T---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCE 226 (446)
Q Consensus 154 -~~~~---~---~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~ 226 (446)
.+++ . .++.|+|++||++..+ +. +.....++.|++++|.|||||+|+|+++++.+++.+.|.
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~--------~~---~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~ 150 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNRG--------QD---KNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCE 150 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCcC--------CC---CCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCC
Confidence 0111 1 1234567777653110 00 011134688999999999999999999999999999999
Q ss_pred cccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCC
Q 013277 227 VCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS 306 (446)
Q Consensus 227 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~ 306 (446)
.|+|+|...+....+|+.|+|+|.++. .+|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|++
T Consensus 151 ~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 226 (365)
T PRK14285 151 SCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGID 226 (365)
T ss_pred CCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCC
Confidence 999999998888899999999998765 4588877799999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCCCCCC
Q 013277 307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPG 385 (446)
Q Consensus 307 ~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g 385 (446)
+|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|++++|+|+||+ ++|.||+++++|
T Consensus 227 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g 306 (365)
T PRK14285 227 DNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTEND 306 (365)
T ss_pred CCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCC
Confidence 9999999999999887778999999999999999999999999999999999999999999999996 689999999999
Q ss_pred cEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhhc
Q 013277 386 DVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQLN 433 (446)
Q Consensus 386 ~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~~ 433 (446)
++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+..
T Consensus 307 ~~irl~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~ 353 (365)
T PRK14285 307 EQIIIKNEGMPILHT-EKFGNLILIIKIKTPKNLNSNAIKLLENLSKE 353 (365)
T ss_pred cEEEECCCCccCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999997654 35799999999999999999999999988743
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-77 Score=609.30 Aligned_cols=344 Identities=43% Similarity=0.760 Sum_probs=299.2
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCC
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~ 154 (446)
..|||++|||+++|+.+|||+|||+||++||||++++ +.++++|++|++||+||+||.+|+.||+||+++++++. +.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~--~~ 80 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNG--GF 80 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCC--CC
Confidence 5799999999999999999999999999999999974 56789999999999999999999999999998775321 11
Q ss_pred CCCc--CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCc
Q 013277 155 SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG 232 (446)
Q Consensus 155 ~~~~--~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G 232 (446)
++|. .++++.|+++|+..||+ ++.+ + .+.....++.|++++|.|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus 81 ~g~~~~~~~~~~f~d~f~~~fg~-g~~~--~---~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G 154 (373)
T PRK14301 81 GGFSSAEDIFSHFSDIFGDLFGF-SGGG--S---RRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG 154 (373)
T ss_pred CCcccccccccchHHHHHHHhhc-cCcc--c---ccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc
Confidence 1221 12232333334322210 0000 0 0111235788999999999999999999999999999999999999
Q ss_pred cccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEE
Q 013277 233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (446)
Q Consensus 233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~ 312 (446)
........+|+.|+|+|.+... .|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++|++|+
T Consensus 155 ~~~~~~~~~C~~C~G~G~v~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 230 (373)
T PRK14301 155 AAPGTSPETCRHCGGSGQVRQS----QGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR 230 (373)
T ss_pred cCCCCCCcccCCccCeeEEEEE----eeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEE
Confidence 9988888899999999998653 378888899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEcc
Q 013277 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAK 392 (446)
Q Consensus 313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g 392 (446)
|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|++++|+|+||+++|+||+++++|++++|+|
T Consensus 231 ~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g 310 (373)
T PRK14301 231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRG 310 (373)
T ss_pred EeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcC
Confidence 99999998777789999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 393 KGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 393 ~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
+|||..+. ..+|||||+|+|.||+.|+++|+++|++|..
T Consensus 311 ~G~p~~~~-~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~ 349 (373)
T PRK14301 311 KGLPYLGS-SQKGDLLVEVSVVTPTKLTKRQEELLREFEA 349 (373)
T ss_pred CCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99998654 4589999999999999999999999999874
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-77 Score=608.65 Aligned_cols=352 Identities=41% Similarity=0.725 Sum_probs=298.5
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhh----ccccceeec
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQ----YGEAGVKST 149 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~----~g~~~~~~~ 149 (446)
+..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|+.||+ ||+++++.+
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 46799999999999999999999999999999999974 5688999999999999999999999999 998877532
Q ss_pred cC-CCCCCCcCCCcCccccccCCC-CCCC----CCCCCCCccc-ccccccccCCceeEeeeeecccccccceeeeeccce
Q 013277 150 VG-GGSSAYTTNPFDLFETFFGPS-MGGF----PGMNQTGFRT-RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL 222 (446)
Q Consensus 150 ~~-~~~~~~~~~~~d~F~~fFg~~-~g~~----~~~~~~~~~~-~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~ 222 (446)
.+ ++.++|..++.++|..+++.+ ++++ ..+++..|+. .+.....++.|++++|.|||||+|+|+++++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~ 166 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ 166 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence 11 111223233344443321110 0000 0000000110 011223468899999999999999999999999999
Q ss_pred eecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeC
Q 013277 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP 302 (446)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip 302 (446)
+.|+.|+|+|........+|+.|+|+|.++... |+|++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|.||
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip 242 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIP 242 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeC
Confidence 999999999999888889999999999987643 5667778999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCC-eEEEEeCCC
Q 013277 303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPG 381 (446)
Q Consensus 303 ~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG-~~~l~i~~~ 381 (446)
+|+++|++|+|+|+|++.+.+..+|||||+|++++|+.|+|+|+||+++++|||.|||+|++++|+|+|| .++|+||++
T Consensus 243 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g 322 (389)
T PRK14295 243 AGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPG 322 (389)
T ss_pred CCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCc
Confidence 9999999999999999987777899999999999999999999999999999999999999999999999 578999999
Q ss_pred CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 382 ~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
+++|++++|+|+|||..+ +.+|||||+|+|.||+.|+++|+++|++|..
T Consensus 323 ~~~g~~iri~G~G~p~~~--~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~ 371 (389)
T PRK14295 323 TPNGRVLRVRGKGAVRKD--GTRGDLLVTVEVAVPKDLSGKAREALEAFRE 371 (389)
T ss_pred cCCCcEEEECCCCcCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 999999999999999743 4589999999999999999999999999875
No 19
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.4e-77 Score=604.83 Aligned_cols=343 Identities=48% Similarity=0.849 Sum_probs=301.3
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCC
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~ 154 (446)
.+|||+||||+++|+.+|||+|||+||++||||+++. +.+.++|++|++||+||+||.+|+.||+||+++++.+..++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~ 82 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF 82 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCc
Confidence 4799999999999999999999999999999999984 678899999999999999999999999999988753211111
Q ss_pred CCCc---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCC
Q 013277 155 SAYT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (446)
Q Consensus 155 ~~~~---~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~ 231 (446)
++|. .++.|+|++||+. ++..+ .+......++.|++++|.|+|||+|+|+++++.+++.+.|..|+|+
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~--g~~~~-------~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~ 153 (366)
T PRK14294 83 SGFDDIFSSFGDIFEDFFGF--GGGRR-------GRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGS 153 (366)
T ss_pred CccccchhhhhhhHHHhhcc--CCCcC-------CcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCc
Confidence 1221 1233667777751 11000 0011123468899999999999999999999999999999999999
Q ss_pred ccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEE
Q 013277 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (446)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i 311 (446)
|........+|+.|+|+|.++.. .|++++..+|+.|+|+|+.+.+.|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus 154 G~~~~~~~~~C~~C~G~G~~~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 229 (366)
T PRK14294 154 GCEPGTSPTTCPQCGGSGQVTQS----QGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRL 229 (366)
T ss_pred cccCCCCcccCCCcCCeEEEEEE----eeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEE
Confidence 99988888999999999988653 37888789999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEc
Q 013277 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA 391 (446)
Q Consensus 312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~ 391 (446)
+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|||.|||+|++++|+|+||+++|.||+++++|++++|+
T Consensus 230 ~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~ 309 (366)
T PRK14294 230 RLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFK 309 (366)
T ss_pred EEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEEC
Confidence 99999999877788999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 392 KKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 392 g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
|+|||..+. ..+|||||+|+|.+|+.|+.+|+++|++|..
T Consensus 310 G~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~ 349 (366)
T PRK14294 310 GKGIPSLRG-GGRGDQIIEVEVKVPTRLTKKQEELLTEFAR 349 (366)
T ss_pred CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999997654 3589999999999999999999999999874
No 20
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.4e-77 Score=608.11 Aligned_cols=344 Identities=40% Similarity=0.736 Sum_probs=297.1
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC-CC
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS 154 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~-~~ 154 (446)
.|||+||||+++|+++|||+|||+||++||||+|++ +.+.++|++|++||++|+||.+|+.||+||++++..+.++ +.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 389999999999999999999999999999999984 5788999999999999999999999999998876422110 00
Q ss_pred CCCc--CC---------------CcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeee
Q 013277 155 SAYT--TN---------------PFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEF 217 (446)
Q Consensus 155 ~~~~--~~---------------~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~ 217 (446)
+++. .+ +.|+|++||++..++|++ ........++.|++++|.|||||+|+|+++++
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-------~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i 153 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-------RGGPAGARQGASKKVHITLSFEEAAKGVEKEL 153 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccc-------cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEE
Confidence 1110 00 124455555421000110 00011234688999999999999999999999
Q ss_pred eccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEE
Q 013277 218 ELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNI 297 (446)
Q Consensus 218 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l 297 (446)
.+++.+.|+.|+|+|........+|+.|+|+|.++... |++++..+|+.|+|+|+++.+.|..|.|.|.+.+.+++
T Consensus 154 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l 229 (391)
T PRK14284 154 LVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSV 229 (391)
T ss_pred EEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEE
Confidence 99999999999999999888889999999999887543 77888899999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccC--CeEE
Q 013277 298 KVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE--GISE 375 (446)
Q Consensus 298 ~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ld--G~~~ 375 (446)
+|.||||+++|++|+|+|+|+++++++.+|||||+|++++|+.|+|+|+||+++++|||.||++|++++|+|+| +.++
T Consensus 230 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~ 309 (391)
T PRK14284 230 HVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCR 309 (391)
T ss_pred EEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEE
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999 5678
Q ss_pred EEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 376 l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
|+||+++++|++++|+|+|||..++ ..+|||||+|+|.+|+.|+++|+++|++|..
T Consensus 310 v~Ip~g~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~ 365 (391)
T PRK14284 310 LTIPEGIQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAA 365 (391)
T ss_pred EEECCccCCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999998654 3589999999999999999999999999873
No 21
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=8.6e-77 Score=601.43 Aligned_cols=346 Identities=51% Similarity=0.893 Sum_probs=308.1
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCCCCC
Q 013277 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAY 157 (446)
Q Consensus 78 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~~~~ 157 (446)
|||++|||+++|+.+|||+|||+||++||||+++++.+.++|++|++||++|+|+.+|+.||+||+++++.+.++..+.|
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 79999999999999999999999999999999987788999999999999999999999999999987753211101111
Q ss_pred ---c----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccC
Q 013277 158 ---T----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (446)
Q Consensus 158 ---~----~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G 230 (446)
. .++.++|++||++.+++ + ..+.....++.|++++|.|||+|+|+|+++++.+++.+.|+.|+|
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~g~-------~--~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G 151 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGGGS-------G--RRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHG 151 (354)
T ss_pred CCccccCcCchhhhHHHHhccCccc-------C--ccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCC
Confidence 1 13346777777632110 0 001122357889999999999999999999999999999999999
Q ss_pred CccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCE
Q 013277 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (446)
Q Consensus 231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~ 310 (446)
+|........+|+.|+|+|.++...++++|++++..+|+.|+|+|+.+.+.|..|.|.|.+.+.+.++|.||+|+++|++
T Consensus 152 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 231 (354)
T TIGR02349 152 TGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQR 231 (354)
T ss_pred CCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCE
Confidence 99988888899999999999999889999999998999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEE
Q 013277 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL 390 (446)
Q Consensus 311 i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l 390 (446)
|+|+|+|++...+..+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+|+||.++|.||+++++|++++|
T Consensus 232 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i 311 (354)
T TIGR02349 232 LRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRL 311 (354)
T ss_pred EEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEE
Confidence 99999999977677899999999999999999999999999999999999999999999999889999999999999999
Q ss_pred ccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhhc
Q 013277 391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQLN 433 (446)
Q Consensus 391 ~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~~ 433 (446)
+|+|||..+. ..+|||||+|+|.||+.|+.+|+++|++|+..
T Consensus 312 ~g~G~p~~~~-~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 312 KGKGVPRLRG-NGRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred CCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999997654 36899999999999999999999999998754
No 22
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-76 Score=599.18 Aligned_cols=345 Identities=38% Similarity=0.728 Sum_probs=302.6
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeecc--C--
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV--G-- 151 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~--~-- 151 (446)
..|||+||||+++||.+|||+|||+||++||||+++++.++++|++|++||++|+|+.+|+.||+||+++++... +
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 81 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence 469999999999999999999999999999999998778899999999999999999999999999988765321 1
Q ss_pred CCCCCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCC
Q 013277 152 GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (446)
Q Consensus 152 ~~~~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~ 231 (446)
++.+++..++.++|++||+..+|+.+ .. .......++.|+++.|.|+|+|+|+|+++++.+++.+.|+.|+|+
T Consensus 82 g~~~~~~~~~~~~f~~~f~~~~gg~~-----~~--~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~ 154 (372)
T PRK14300 82 GNHGGFHPDINDIFGDFFSDFMGGSR-----RS--RPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGS 154 (372)
T ss_pred CCCCccccchhhhHHHHHHhhcCCCC-----CC--CCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCc
Confidence 11122222344667777764332210 00 000112468899999999999999999999999999999999999
Q ss_pred ccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEE
Q 013277 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (446)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i 311 (446)
|........+|+.|+|+|.++.. .|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus 155 g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 230 (372)
T PRK14300 155 GSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI 230 (372)
T ss_pred ccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEE
Confidence 99988888999999999988653 48888789999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCC-eEEEEeCCCCCCCcEEEE
Q 013277 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVL 390 (446)
Q Consensus 312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG-~~~l~i~~~~~~g~~~~l 390 (446)
+++|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+|| .++|+||+++++|++++|
T Consensus 231 ~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri 310 (372)
T PRK14300 231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRL 310 (372)
T ss_pred EEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEE
Confidence 9999999987778899999999999999999999999999999999999999999999998 578999999999999999
Q ss_pred ccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 391 ~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
+|+|||..++ ..+|||||+|+|.||++||++|+++|++|+.
T Consensus 311 ~g~G~p~~~~-~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~ 351 (372)
T PRK14300 311 RSKGMSKMRS-TIRGDMLTHIHVEVPKNLSKRQRELLEEFKK 351 (372)
T ss_pred CCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999997653 3689999999999999999999999999873
No 23
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.5e-76 Score=597.51 Aligned_cols=344 Identities=44% Similarity=0.776 Sum_probs=299.3
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC-C
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-G 152 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-~ 152 (446)
+..|||++|||+++|+.+|||+|||+||++||||+|++ +.+.++|++|++||++|+||.+|+.||+||++++..+.+ +
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~ 81 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGG 81 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCC
Confidence 35799999999999999999999999999999999974 568899999999999999999999999999887753211 1
Q ss_pred CCCCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCc
Q 013277 153 GSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG 232 (446)
Q Consensus 153 ~~~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G 232 (446)
+.+++ .++.|+|++||+..||+.+ + . ++....++.|++++|.|||||+|+|+++++.+++.+.|+.|+|+|
T Consensus 82 ~~~~~-~~~~~~f~~~f~~~fgg~~-----~--~-~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G 152 (371)
T PRK10767 82 GFGGG-GGFGDIFGDIFGDIFGGGR-----G--G-GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSG 152 (371)
T ss_pred CCCCc-cccccchhhhhhhhccCCc-----c--c-cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcc
Confidence 11111 1122344455543322100 0 0 011235788999999999999999999999999999999999999
Q ss_pred cccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEE
Q 013277 233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (446)
Q Consensus 233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~ 312 (446)
.........|+.|+|+|.++... |++++..+|+.|+|+|+.+.+.|..|.|.|.+.+.+.++|.||+|+++|++|+
T Consensus 153 ~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 228 (371)
T PRK10767 153 AKPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIR 228 (371)
T ss_pred cCCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEE
Confidence 99888888999999999876543 77777789999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEcc
Q 013277 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAK 392 (446)
Q Consensus 313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g 392 (446)
|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+|+||.++|+||+++++|++++|+|
T Consensus 229 ~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g 308 (371)
T PRK10767 229 LSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRG 308 (371)
T ss_pred EecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECC
Confidence 99999997777789999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 393 KGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 393 ~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus 309 ~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~ 347 (371)
T PRK10767 309 KGVKSVRS-GARGDLYCQVVVETPVNLTKRQKELLEEFEE 347 (371)
T ss_pred CCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99997654 4689999999999999999999999999875
No 24
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.3e-76 Score=597.50 Aligned_cols=351 Identities=42% Similarity=0.756 Sum_probs=303.1
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCC
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~ 154 (446)
...|||++|||+++|+.+|||+|||+||++||||+|+++.+.++|++|++||++|+||.+|+.||+||+++++.. +. .
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~-~~-~ 80 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGF-SQ-E 80 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccc-cc-c
Confidence 367999999999999999999999999999999999888899999999999999999999999999998876421 10 0
Q ss_pred CCCc-CCCcCccccccCCCCCC-CCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCc
Q 013277 155 SAYT-TNPFDLFETFFGPSMGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG 232 (446)
Q Consensus 155 ~~~~-~~~~d~F~~fFg~~~g~-~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G 232 (446)
+.|. .++.++|..|+++ ++. |..+ +|++.......++.|+.++|.|+|+|+|+|+++++.+++.+.|+.|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~f~~~---~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G 156 (378)
T PRK14283 81 DIFNNINFEDIFQGFGFG-IGNIFDMF---GFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSR 156 (378)
T ss_pred ccccccCccccccccccc-hhhhcccc---ccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccc
Confidence 1111 1112223222210 000 0000 00000011134688999999999999999999999999999999999999
Q ss_pred cccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEE
Q 013277 233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (446)
Q Consensus 233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~ 312 (446)
........+|+.|+|+|.++...++.+|++++..+|+.|+|+|+.+.+.|..|+|.|.+.+.++++|.||+|+++|++|+
T Consensus 157 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~ 236 (378)
T PRK14283 157 AEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLR 236 (378)
T ss_pred cCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEE
Confidence 99888889999999999999888899999988899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEcc
Q 013277 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAK 392 (446)
Q Consensus 313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g 392 (446)
|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.||++|+++.|+|+||.+.|+||+++++|++++|+|
T Consensus 237 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g 316 (378)
T PRK14283 237 VSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKG 316 (378)
T ss_pred EeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECC
Confidence 99999998767789999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 393 KGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 393 ~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
+|||..+. ..+|||||+|+|.||++|+++|+++|++|..
T Consensus 317 ~G~p~~~~-~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~ 355 (378)
T PRK14283 317 HGMPSLRW-SGKGNLYVKVKVVVPKKLSPKQKELLREFAS 355 (378)
T ss_pred CCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 99997653 3589999999999999999999999998873
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-75 Score=596.17 Aligned_cols=351 Identities=40% Similarity=0.743 Sum_probs=299.9
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC--CC
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--GG 153 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~--~~ 153 (446)
.+|||++|||+++|+.+|||+|||+||++||||+|+++.+.++|++|++||+||+||.+|+.||+||++++..+.+ .+
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 5799999999999999999999999999999999988889999999999999999999999999999887653211 11
Q ss_pred CCCCc----CCCcCccccccCCC-CCC-CCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeeccc
Q 013277 154 SSAYT----TNPFDLFETFFGPS-MGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (446)
Q Consensus 154 ~~~~~----~~~~d~F~~fFg~~-~g~-~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~ 227 (446)
...|. .++.|+|++||+.. +++ |++.++.+-.........++.|+.+.|.|||+|+|+|+++++.+++.+.|..
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 161 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA 161 (382)
T ss_pred ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence 11121 23446677775321 011 1111000000000112347889999999999999999999999999999999
Q ss_pred ccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCC
Q 013277 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (446)
Q Consensus 228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~ 307 (446)
|+|+|........+|+.|+|+|.++.. .|++++..+|+.|+|+|. +.+.|..|+|.|.+.+.++++|.||||+++
T Consensus 162 C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~ 236 (382)
T PRK14291 162 CGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDN 236 (382)
T ss_pred CccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCC
Confidence 999999988888999999999988764 367777899999999995 788999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCc
Q 013277 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGD 386 (446)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~ 386 (446)
|++|+|+|+|+++++++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||+ ++|+||+++++|+
T Consensus 237 G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~ 316 (382)
T PRK14291 237 GSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGD 316 (382)
T ss_pred CCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCC
Confidence 999999999999887888999999999999999999999999999999999999999999999996 6899999999999
Q ss_pred EEEEccCCCCCCCCCCCCCCEEEEEEEEcCC--CCC------cchHHHHHHHhh
Q 013277 387 VLVLAKKGAPKLNKPSIRGDHLFTVKVTIPN--RIR------YVYSPSLTIIQL 432 (446)
Q Consensus 387 ~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~--~ls------~~~~~~l~~l~~ 432 (446)
+++|+|+|||..+. ..+|||||+|+|.||+ .|| ++|+++|++|..
T Consensus 317 ~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~ 369 (382)
T PRK14291 317 KIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDK 369 (382)
T ss_pred EEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHh
Confidence 99999999998654 3689999999999998 599 999999998863
No 26
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-75 Score=594.92 Aligned_cols=351 Identities=55% Similarity=0.963 Sum_probs=309.1
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC-CCC
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GGS 154 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-~~~ 154 (446)
..|||+||||+++|+.+|||+|||+||++||||+|+++.+.++|++|++||++|+||.+|+.||+||+++++.+.+ ++.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~ 81 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM 81 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence 4699999999999999999999999999999999988889999999999999999999999999999887653211 000
Q ss_pred CCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCccc
Q 013277 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (446)
Q Consensus 155 ~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~ 234 (446)
+.+ .++.|+|++||++. +++ ++.+.. .+.....++.|++++|.|+|||+|.|+++++.+++.+.|+.|+|+|..
T Consensus 82 ~~~-~~~~d~f~~~fg~~-~~~---~~~~~~-~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~ 155 (374)
T PRK14293 82 GDM-GGFADIFETFFSGF-GGA---GGQGGR-RRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAK 155 (374)
T ss_pred ccc-cchHHHHHHHhccc-CCC---CCCCcc-ccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCC
Confidence 111 12336788888631 111 100000 011123468899999999999999999999999999999999999999
Q ss_pred cCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEc
Q 013277 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (446)
Q Consensus 235 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (446)
......+|+.|+|+|.++...++++|++++..+|+.|+|+|+++++.|..|.|.|.+.+.++++|.||||+++|++|+|+
T Consensus 156 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~ 235 (374)
T PRK14293 156 PGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVS 235 (374)
T ss_pred CCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEc
Confidence 88888999999999999888889999999989999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEccCC
Q 013277 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG 394 (446)
Q Consensus 315 g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g~G 394 (446)
|+|++...+..+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+|+||+++|+||+++++|++++|+|+|
T Consensus 236 g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G 315 (374)
T PRK14293 236 GEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKG 315 (374)
T ss_pred cCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCC
Confidence 99998776677899999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 395 APKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 395 ~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
||..++++.+|||||+|+|.||+.|+++|+++|++|+.
T Consensus 316 ~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~ 353 (374)
T PRK14293 316 VPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAK 353 (374)
T ss_pred CCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99866545689999999999999999999999999884
No 27
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-75 Score=595.75 Aligned_cols=355 Identities=42% Similarity=0.703 Sum_probs=307.0
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC-C
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-G 152 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-~ 152 (446)
...|||++|||+++|+.+|||+|||+||++||||+|++ +.+.++|++|++||++|+||.+|+.||+||+++++.+.+ +
T Consensus 3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14289 3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGG 82 (386)
T ss_pred ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCC
Confidence 35799999999999999999999999999999999974 578999999999999999999999999999987653211 1
Q ss_pred CCCCCcCCCcCcc---ccccCCCCCCCCCCCCCCcc-cccccccccCCceeEeeeeecccccccceeeeeccceeecccc
Q 013277 153 GSSAYTTNPFDLF---ETFFGPSMGGFPGMNQTGFR-TRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVC 228 (446)
Q Consensus 153 ~~~~~~~~~~d~F---~~fFg~~~g~~~~~~~~~~~-~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C 228 (446)
+.++...++.++| +++|++.++++++++ .+. ........++.|+++.|.|+|+|+|+|+++++.+++.+.|+.|
T Consensus 83 ~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~--~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C 160 (386)
T PRK14289 83 GFSGEGMSMEDIFSMFGDIFGGHGGGFGGFG--GFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC 160 (386)
T ss_pred CCCCCCcChhhhhHHhhhhhcccccCccccc--ccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence 1111011233343 333553322211110 001 0011123468899999999999999999999999999999999
Q ss_pred cCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCC
Q 013277 229 TGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG 308 (446)
Q Consensus 229 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G 308 (446)
+|+|........+|+.|+|+|.++...++++|++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|+||+|+++|
T Consensus 161 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 240 (386)
T PRK14289 161 HGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEG 240 (386)
T ss_pred CCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCC
Confidence 99999988888999999999999998889999999889999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEE
Q 013277 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVL 388 (446)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~ 388 (446)
++|+|+|+|++.+.++.+|||||+|++++|+.|+|+++||++++.|+|.||++|+++.|+|+||+++|.||+++++|+++
T Consensus 241 ~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ 320 (386)
T PRK14289 241 MQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVL 320 (386)
T ss_pred CEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEE
Confidence 99999999999877778999999999999999999999999999999999999999999999999899999999999999
Q ss_pred EEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 389 ~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
+|+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus 321 ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~ 363 (386)
T PRK14289 321 RLRNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMEN 363 (386)
T ss_pred EECCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 999999997654 3689999999999999999999999999886
No 28
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.8e-74 Score=582.72 Aligned_cols=344 Identities=38% Similarity=0.695 Sum_probs=303.0
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC-CCCC
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GGSS 155 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-~~~~ 155 (446)
.|||++|||+++|+.+|||+|||+||++||||+++++.+.++|++|++||++|+||.+|+.||+||+++..+..+ ++.+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~ 81 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG 81 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence 489999999999999999999999999999999988889999999999999999999999999999876321111 1111
Q ss_pred CCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCcccc
Q 013277 156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM 235 (446)
Q Consensus 156 ~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~ 235 (446)
++..++.|+|+.||++.. +++ +.+. ....++.|+.+.+.|+|+|+|+|+++++.+++.+.|+.|+|+|...
T Consensus 82 ~~~~d~~d~f~~~fg~~~--~~~----~~~~---~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~ 152 (371)
T PRK14292 82 GMGFDPMDIFEQLFGGAG--FGG----GRGR---RGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEP 152 (371)
T ss_pred ccCCChHHHHHHhhCCCC--cCC----CCCc---ccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCC
Confidence 222355688888887421 110 0000 1134688999999999999999999999999999999999999986
Q ss_pred Ccc-eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEc
Q 013277 236 GSK-MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (446)
Q Consensus 236 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (446)
... ..+|+.|+|+|.+....++.+|++++..+|+.|+|+|+.+...|..|.|.|.+.+.++++|.||+|+++|++|+|+
T Consensus 153 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~ 232 (371)
T PRK14292 153 GGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVA 232 (371)
T ss_pred CCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEe
Confidence 653 7899999999999887788889998889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEccCC
Q 013277 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG 394 (446)
Q Consensus 315 g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g~G 394 (446)
|+|++.+++. |||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||+..|.||+++++|++++|+|+|
T Consensus 233 G~G~~~~~~~--GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G 310 (371)
T PRK14292 233 GMGNEGPGGN--GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQG 310 (371)
T ss_pred cCcCCCCCCC--CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCC
Confidence 9999976443 99999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 395 APKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 395 ~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
||..++ ..+|||||+|+|.||+.|+++|+++|+++..
T Consensus 311 ~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~ 347 (371)
T PRK14292 311 MPRLQG-AGTGDLIVEYEIAVPKQLSPEAREALEAYAR 347 (371)
T ss_pred CCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 997654 3579999999999999999999999999874
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-73 Score=577.17 Aligned_cols=347 Identities=37% Similarity=0.654 Sum_probs=297.1
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC-
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG- 152 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~- 152 (446)
..|||+||||+++|+.+|||+|||+||++||||++++. .+.++|++|++||++|+||.+|+.||+||+.+++.+.++
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~ 81 (365)
T PRK14290 2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNF 81 (365)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCc
Confidence 36999999999999999999999999999999999753 688999999999999999999999999999877531111
Q ss_pred CCCCC--cCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccC
Q 013277 153 GSSAY--TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (446)
Q Consensus 153 ~~~~~--~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G 230 (446)
+.+.+ ..++.|+|+.||++.+++ ..++ +.+. ......++.|+++.|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~~~~~-~~~~--~~~~-~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G 157 (365)
T PRK14290 82 NWDNFTHFSDINDIFNQIFGGNFGS-DFFS--GFGN-QQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG 157 (365)
T ss_pred cccccccccchhHHHHHHhcCcccc-cccc--cccc-ccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence 00111 124567888888742111 0000 0000 1111224789999999999999999999999999999999999
Q ss_pred CccccCcceeeCCCCCCccEEEEeeeCCceeeee--eecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCC
Q 013277 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQ--VSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG 308 (446)
Q Consensus 231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~--~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G 308 (446)
+|.... ...+|+.|+|+|.++... .+|++.+ ..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+.+|
T Consensus 158 ~g~~~~-~~~~C~~C~G~G~~~~~~--~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 234 (365)
T PRK14290 158 TGAKNG-KLITCPTCHGTGQQRIVR--GQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDN 234 (365)
T ss_pred ccCCCC-CCccCCCCCCcCEEEEEe--ccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCC
Confidence 999876 578999999999877655 3566543 47999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEE
Q 013277 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVL 388 (446)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~ 388 (446)
++|+|+|+|+. .++.+|||||+|++++|+.|+|+|+||+++++|||.||++|++++|+|++|+++|+||+++++|+++
T Consensus 235 ~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~i 312 (365)
T PRK14290 235 LRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVL 312 (365)
T ss_pred cEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEE
Confidence 99999999996 4678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 389 ~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
+|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+.
T Consensus 313 ri~g~G~p~~~~-~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~ 355 (365)
T PRK14290 313 KIKGAGMPHLNG-HGSGDLLVRINVEVPKRLTSKQKELIREFFD 355 (365)
T ss_pred EECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999997654 3589999999999999999999999998763
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-69 Score=528.22 Aligned_cols=329 Identities=40% Similarity=0.720 Sum_probs=295.1
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCCC
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSS 155 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~~ 155 (446)
...||+||||+++||++|||+|||+||++||||+|++ +.++|++|++||||||||++|++||+||+++++.+.+++
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~-- 78 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGG-- 78 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCC--
Confidence 4579999999999999999999999999999999975 889999999999999999999999999999986543222
Q ss_pred CCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCcccc
Q 013277 156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM 235 (446)
Q Consensus 156 ~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~ 235 (446)
++. . |++||+ +|+.++ +. +.++.|+.+++.|+|||+|.|.++++.++++..|+.|.|.|...
T Consensus 79 g~~----~-f~~~F~--~g~~~~--------~~---~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgks 140 (337)
T KOG0712|consen 79 GFG----G-FSQFFG--FGGNGG--------RG---RQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKS 140 (337)
T ss_pred CCc----c-HHHhcc--CCCcCc--------cc---cccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCC
Confidence 111 1 788887 222111 11 12389999999999999999999999999999999999999987
Q ss_pred CcceeeCCCCCCccEEEEeeeCCceeeeee-ecCCCCCCcceE--eceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEE
Q 013277 236 GSKMRICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGEV--ISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (446)
Q Consensus 236 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~--~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~ 312 (446)
+.. ..|+.|.|+|..+++.++.+|+.++. ..|..|+|.|.+ ..+.|+.|.|.+.+.+.+.++|.|++|+.+++.|.
T Consensus 141 g~~-~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~ 219 (337)
T KOG0712|consen 141 GSA-PKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKIT 219 (337)
T ss_pred CCC-CCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceee
Confidence 764 48999999999999999999998876 799999999998 56899999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCC--CCCCcEEE
Q 013277 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLV 389 (446)
Q Consensus 313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~--~~~g~~~~ 389 (446)
+.|++++.+ +..+||+++.|..++|+.|.|+++||++..+|+|.||++|+.+.+.|+||+ +++.++|+ +.||++++
T Consensus 220 f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~ 298 (337)
T KOG0712|consen 220 FKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKR 298 (337)
T ss_pred eeeeeeecC-CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEe
Confidence 999999976 556999999999999999999999999999999999999999999999998 57888886 79999999
Q ss_pred EccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHh
Q 013277 390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQ 431 (446)
Q Consensus 390 l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~ 431 (446)
|+|+|||+.+++ +|||||+|+|+||+ +++++...|+.++
T Consensus 299 v~~~gmp~~~~~--~g~lyi~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 299 VEGEGMPIFRNP--KGDLYIKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred ecCCCcccccCC--CCcEEEEEEEEcCC-CChHHHHHHHhhC
Confidence 999999999886 89999999999999 9999999998764
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.2e-59 Score=458.23 Aligned_cols=274 Identities=41% Similarity=0.694 Sum_probs=227.6
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC---
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--- 151 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~--- 151 (446)
+..|||+||||+++||.+|||+|||+||++||||+|+++.+.++|++|++||++|+||.+|+.||+||++++..+..
T Consensus 2 ~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~ 81 (291)
T PRK14299 2 AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPP 81 (291)
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCC
Confidence 35799999999999999999999999999999999988889999999999999999999999999999875432110
Q ss_pred ---CCCCCCc----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceee
Q 013277 152 ---GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLET 224 (446)
Q Consensus 152 ---~~~~~~~----~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~ 224 (446)
++.+.+. .++.|+|++|||+. +++++++ ..+... .....++.|+++++.|||+|++.|+++++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~d~f~~~fgg~-~~~~~~g-~~~~~~-~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~---- 154 (291)
T PRK14299 82 PGPPGGGDFSGFNVGDFSDFFQQLFGGR-GGFGGFG-DLFGSV-GRRARKGRDLEAELPLTLEEAYRGGEKVVEVA---- 154 (291)
T ss_pred CCCCCCCCccccCcCCHHHHHHHHhCCC-CCCCCcc-cccccc-cCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC----
Confidence 0111121 23346777787631 1111110 001110 01234688999999999999999998876531
Q ss_pred cccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCC
Q 013277 225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG 304 (446)
Q Consensus 225 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G 304 (446)
.++++|+||+|
T Consensus 155 ---------------------------------------------------------------------g~~~~V~Ip~G 165 (291)
T PRK14299 155 ---------------------------------------------------------------------GERLSVRIPPG 165 (291)
T ss_pred ---------------------------------------------------------------------CEEEEEecCCC
Confidence 24678999999
Q ss_pred CCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCC
Q 013277 305 VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQP 384 (446)
Q Consensus 305 ~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~ 384 (446)
+++|++|+++|+|++. |||||+|++++|+.|+|+|+||+++++|||.||++|+++.|+|+||+++|+||+++++
T Consensus 166 ~~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~ 239 (291)
T PRK14299 166 VREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQA 239 (291)
T ss_pred cCCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCC
Confidence 9999999999999973 9999999999999999999999999999999999999999999999989999999999
Q ss_pred CcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 385 GDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 385 g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
|++++|+|+|||.. ++.+|||||+|+|.+|+.|+++|+++|++|..
T Consensus 240 g~~~rl~g~G~p~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~ 285 (291)
T PRK14299 240 GRKLRLKGKGWPRG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAE 285 (291)
T ss_pred CCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999963 24689999999999999999999999999863
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=9e-58 Score=453.25 Aligned_cols=284 Identities=30% Similarity=0.533 Sum_probs=234.7
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhcccc----ceeeccC
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA----GVKSTVG 151 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~----~~~~~~~ 151 (446)
.+|||++|||+++|+.+|||+|||+||++||||+++++.+.++|++|++||++|+||.+|+.||+||.. ++.....
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~ 82 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence 369999999999999999999999999999999998888999999999999999999999999999854 2221101
Q ss_pred C-CCCCCc-CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeeccccc
Q 013277 152 G-GSSAYT-TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCT 229 (446)
Q Consensus 152 ~-~~~~~~-~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~ 229 (446)
. +...+. .++.++|+.||+.. ++. .. +....++.|+.+++.|+|+|++.|+.+++.+++. .
T Consensus 83 ~~~~~~~~~~~~~~~f~~~~g~~----~~~-----~~--~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~----~-- 145 (306)
T PRK10266 83 HGDGQSFNAEDFDDIFSSIFGQH----ARQ-----SR--QRPAARGHDIEIEVAVFLEETLTEHKRTISYNLP----V-- 145 (306)
T ss_pred cCCCCCCCCCCHHHHHHHHhCCC----CCC-----CC--CCCCCCCCceEEEEEEEHHHhcCCceEEEEEecc----c--
Confidence 0 111121 23446677777631 110 00 1123468899999999999999999998877542 1
Q ss_pred CCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCC
Q 013277 230 GTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGS 309 (446)
Q Consensus 230 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~ 309 (446)
|.|.|.+.. ...++++|.||+|+++|+
T Consensus 146 ---------------~~g~G~~~~--------------------------------------~~~~~~~V~Ip~G~~~G~ 172 (306)
T PRK10266 146 ---------------YNAFGMIEQ--------------------------------------EIPKTLNVKIPAGVGNGQ 172 (306)
T ss_pred ---------------ccCCCeEEE--------------------------------------eeeEEEEEEECCCCcCCc
Confidence 222232110 113579999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEE
Q 013277 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLV 389 (446)
Q Consensus 310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~ 389 (446)
+|+++|+|++..++..+|||||+|++++|+.|+|+|+||+++++|||.+|++|+++.|+|+||++.|+||+++++|++++
T Consensus 173 ~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~r 252 (306)
T PRK10266 173 RIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLR 252 (306)
T ss_pred EEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEE
Confidence 99999999998777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 390 l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
|+|+|||..+ .+|||||+|+|.+|+.|+++|+++|++|..
T Consensus 253 i~g~G~p~~~---~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~ 292 (306)
T PRK10266 253 VKGKGLVSKK---QTGDLYAVLKIVMPPKPDEKTAALWQQLAD 292 (306)
T ss_pred ECCCCCCCCC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999743 489999999999999999999999999875
No 33
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-43 Score=338.86 Aligned_cols=313 Identities=34% Similarity=0.489 Sum_probs=238.9
Q ss_pred ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeecc
Q 013277 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV 150 (446)
Q Consensus 72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~ 150 (446)
.+...+|||++|||+++|+..|||+||||||++||||+|++ |.|.+.|++|+.||+|||||++|+.||+||++++....
T Consensus 11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~ 90 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDEN 90 (336)
T ss_pred hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccc
Confidence 45567899999999999999999999999999999999995 88999999999999999999999999999999987431
Q ss_pred CCCCCCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccC
Q 013277 151 GGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (446)
Q Consensus 151 ~~~~~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G 230 (446)
....++.. ..++|..||+.....+++- .......++.++...+..+++++|.|...+..-...+.|.. .|
T Consensus 91 ~~~~~g~~--~~~~f~~~f~dfg~~~~g~-------~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~g 160 (336)
T KOG0713|consen 91 KDGEGGGG--GNDIFSAFFGDFGVTVGGN-------PLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-PG 160 (336)
T ss_pred cccccCCc--ccchHHHhhcccccccCCC-------cccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-Cc
Confidence 10111100 1466777776432111111 11122568899999999999999998865555444443322 11
Q ss_pred CccccCcceeeCCCCCCccEEEEeeeCCceeeee--eecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCC
Q 013277 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQ--VSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG 308 (446)
Q Consensus 231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~--~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G 308 (446)
+ . .|+-+ ..+.+++...|++++ ...|..|.+ .+.+.++.++++.+..|+..|
T Consensus 161 ~--------~---~~~~~-~~~~~~~~~~g~~~~~q~~~~~~~~~--------------~k~~~e~~~~~~~~~~~~~~~ 214 (336)
T KOG0713|consen 161 T--------R---KCNCR-LEMFTQQEGPGRFQMLQEAVCDECPN--------------VKLVLEEDPLEVEFERGDADG 214 (336)
T ss_pred c--------c---ccCCh-hhheeeccCCChhhhhhhhhhccCCc--------------cceeecCCceeeeeeecccCC
Confidence 1 0 11111 112222333333322 245555555 555566789999999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeE-EEEeCCCCCCCcE
Q 013277 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS-ELQVPPGTQPGDV 387 (446)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~-~l~i~~~~~~g~~ 387 (446)
....+..+|.+.. -+.+||+++.+...+|+.|.|+++|+++++.+++.+++.|+..++.++|+.. .+..-.++.|+..
T Consensus 215 ~~~~~~~~~~~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~ 293 (336)
T KOG0713|consen 215 PEEIFELEGEPHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGAR 293 (336)
T ss_pred ceeeeeccCCcce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchh
Confidence 9999999999865 4679999999999999999999999999999999999999999999999973 4555567889999
Q ss_pred EEEccCCCCCCCCCCCCCCEEEEEEEEcCCC-CCc
Q 013277 388 LVLAKKGAPKLNKPSIRGDHLFTVKVTIPNR-IRY 421 (446)
Q Consensus 388 ~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~-ls~ 421 (446)
++..++|||...+....|+++++|.+.+|.+ ++.
T Consensus 294 ~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 294 TRKKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred hhhhhccchhhhccchhcceeEEecccCcccccch
Confidence 9999999998777678899999999999965 555
No 34
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=1.1e-40 Score=349.08 Aligned_cols=125 Identities=17% Similarity=0.187 Sum_probs=113.5
Q ss_pred EEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEec
Q 013277 290 RIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKT 369 (446)
Q Consensus 290 ~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ 369 (446)
.+.+.++++|+||+|+++|++|+|+|+|+.+++ + +|||||+|++++|+.|+|+|+|||+++.|+|.+||+|+++.|+|
T Consensus 692 tvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpg-g-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpT 769 (871)
T TIGR03835 692 TTNEAITLEIQLPITSQLNISAIFKGFGHDFGN-G-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFG 769 (871)
T ss_pred eeeeeEEEEEecCCCCCCCCEEEeccccCCCCC-C-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeC
Confidence 345567999999999999999999999998653 3 49999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEE-cCCC
Q 013277 370 VEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVT-IPNR 418 (446)
Q Consensus 370 ldG~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~-~P~~ 418 (446)
|||++.|.||+++++|++++|+|+|||..+ +.||||||+|+|. ++++
T Consensus 770 LDGrVkLkIPpgTqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~~~k~ 817 (871)
T TIGR03835 770 PNKLFNVRIPGGIKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSSVMKK 817 (871)
T ss_pred CCCCEEEeeCCCCCCCcEEEECCCCCCCCC--CCCCCEEEEEEEeecccc
Confidence 999988999999999999999999999543 4589999999998 5553
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-41 Score=330.98 Aligned_cols=245 Identities=44% Similarity=0.838 Sum_probs=216.9
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCCCCC
Q 013277 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAY 157 (446)
Q Consensus 78 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~~~~ 157 (446)
|||+||||+++|+..|||+||++||++||||.|+++++.++|++|.+|||+|+|+++|+.||.++..+ .+.+
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~--------~~~~ 115 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ--------HGEF 115 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc--------cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998765 1122
Q ss_pred cCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCccccCc
Q 013277 158 TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS 237 (446)
Q Consensus 158 ~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~ 237 (446)
..++++.|..+|++. + .....+.++++++.+.|+++..|+.+.+.+.....|..|.|.|...+.
T Consensus 116 ~g~~~~~~~~~~~~~------~----------~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~ 179 (288)
T KOG0715|consen 116 GGNPFDVFLEFFGGK------M----------NKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGA 179 (288)
T ss_pred cCCccchHHHhhccc------c----------cccccCcccccccccCHHHHhhccccceEEEeecccccccCcCccccc
Confidence 337888999888741 0 012345678899999999999999999999999999999999999999
Q ss_pred ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCC
Q 013277 238 KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317 (446)
Q Consensus 238 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G 317 (446)
....|..|.|+|.+......++.+. +|..|+|.|.+..+.|..|.|.|.+...+.+.|.+|+|+.++.+|++.+.|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~ 255 (288)
T KOG0715|consen 180 KRESCKTCSGRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHG 255 (288)
T ss_pred ccccchhhhCcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCC
Confidence 9999999999997655443333332 899999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHH
Q 013277 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLD 358 (446)
Q Consensus 318 ~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~e 358 (446)
.. ||+|.+.|.+++.|+|+|.|++++..|++.|
T Consensus 256 ~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 256 ND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred cc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence 64 9999999999999999999999999998754
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-21 Score=192.49 Aligned_cols=263 Identities=34% Similarity=0.488 Sum_probs=181.7
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC-
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG- 151 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~- 151 (446)
+..|||++|+|.++|+.+|||+||+++|+++|||+++.+ .+.++|+++.|||++|+|+.+|..||+||++++.+...
T Consensus 1 ~~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~ 80 (306)
T KOG0714|consen 1 MGKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSF 80 (306)
T ss_pred CcccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCC
Confidence 357999999999999999999999999999999998876 56668999999999999999999999999876654111
Q ss_pred -C--CCC---CCcCCCcCccccccCCCCCCCCC---------------------CCCCCcc-cc-------cccccccCC
Q 013277 152 -G--GSS---AYTTNPFDLFETFFGPSMGGFPG---------------------MNQTGFR-TR-------RRSTVTKGE 196 (446)
Q Consensus 152 -~--~~~---~~~~~~~d~F~~fFg~~~g~~~~---------------------~~~~~~~-~~-------~~~~~~~g~ 196 (446)
. ..+ ....++.++|.+|||........ ....... .+ ......+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (306)
T KOG0714|consen 81 SSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSP 160 (306)
T ss_pred CCCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCC
Confidence 0 011 12334556777787722110000 0000000 00 000000111
Q ss_pred ceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcce
Q 013277 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE 276 (446)
Q Consensus 197 di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~ 276 (446)
.+...+.+++++.+.++.+...+.+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 188 (306)
T KOG0714|consen 161 PVEHPLRVSLEDLYKGESKKMKISRQSF---------------------------------------------------- 188 (306)
T ss_pred CccCCcceeHHHhccccceeeecccccc----------------------------------------------------
Confidence 1222333355555555544443322110
Q ss_pred EeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEE--Eee
Q 013277 277 VISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST--ISI 354 (446)
Q Consensus 277 ~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~--~~I 354 (446)
...... .......+.+.+.++++.|+.+....+|+..+. ..+-++++.+..++|..|.++++||.+. ..|
T Consensus 189 ---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (306)
T KOG0714|consen 189 ---TSNGRE----GSSRSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEI 260 (306)
T ss_pred ---cCCccc----ccCccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceeccccee
Confidence 000000 112356788999999999999999999988653 5688999999999999999999999999 999
Q ss_pred cHHHHhCCCEEEEeccCCeE-EEEeC-CCCCCCcEEEEccCCCCC
Q 013277 355 SYLDAIMGTVVKVKTVEGIS-ELQVP-PGTQPGDVLVLAKKGAPK 397 (446)
Q Consensus 355 sl~eAl~G~~~~i~~ldG~~-~l~i~-~~~~~g~~~~l~g~G~P~ 397 (446)
++.+|++|....++++++.. .+.+. ....++....++++|||.
T Consensus 261 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 261 SLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred ehhhhhcCcceeeecccCccccCcccccccCCCceeeecCCCCCC
Confidence 99999999999999999974 34444 457899999999999985
No 37
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.85 E-value=2.3e-21 Score=155.15 Aligned_cols=80 Identities=34% Similarity=0.632 Sum_probs=70.4
Q ss_pred ceEEEEeecHHHHhCCCEEEEeccCC-eEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHH
Q 013277 347 DLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSP 425 (446)
Q Consensus 347 dL~~~~~Isl~eAl~G~~~~i~~ldG-~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~ 425 (446)
||+++++|+++||++|++++|+|+|| .++|+||+++++|++++|+|+|||...+++.+|||||+|+|.||++||++||+
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 89999999999999999999999999 67899999999999999999999998876689999999999999999999998
Q ss_pred H
Q 013277 426 S 426 (446)
Q Consensus 426 ~ 426 (446)
|
T Consensus 81 l 81 (81)
T PF01556_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 6
No 38
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.7e-19 Score=168.35 Aligned_cols=72 Identities=60% Similarity=0.980 Sum_probs=68.7
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~ 147 (446)
..|+|+||||+++|+.++||||||+|+++||||++++ |++.++|++||+||++|+||.+|..||+||+.++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 6789999999999999999999999999999999987 88999999999999999999999999999987764
No 39
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4e-17 Score=153.37 Aligned_cols=69 Identities=59% Similarity=0.862 Sum_probs=64.1
Q ss_pred ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (446)
Q Consensus 74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~--~~~~f~~i~~Ay~vL~d~~~r~~yd~~g 142 (446)
.+..+||+||||+++|+.+|||+|||++|++||||+++... +.+.|+.|++||++|+|+.+|+.||+++
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 34679999999999999999999999999999999998643 8899999999999999999999999973
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.1e-18 Score=172.16 Aligned_cols=72 Identities=56% Similarity=0.953 Sum_probs=67.8
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~ 147 (446)
+.|||.+|+|+++||++|||+|||++++.||||+..++ .|++.|+.|.+||||||||.+|++||.||++|++
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 45899999999999999999999999999999998754 4789999999999999999999999999999987
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.71 E-value=3.7e-18 Score=184.05 Aligned_cols=77 Identities=36% Similarity=0.587 Sum_probs=71.1
Q ss_pred ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (446)
Q Consensus 72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~ 148 (446)
.+....+||++|||+++|+.+|||+|||+||++||||+++++.+.++|++|++||+|||||.+|+.||+||..+++.
T Consensus 568 ~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 568 IEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 44457899999999999999999999999999999999987778899999999999999999999999999887653
No 42
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4e-17 Score=162.68 Aligned_cols=118 Identities=33% Similarity=0.696 Sum_probs=94.8
Q ss_pred ceeecccccCCccccCcc-------eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec--------
Q 013277 221 HLETCEVCTGTGAKMGSK-------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------- 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~-------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-------- 285 (446)
..++|++|+|+|.....+ ..+|++|+|+|+++. .+|+.|+|.|++.+..-.++
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~~~~~i~V~IPaGv~~ 225 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVKKKKSISVNIPAGVDD 225 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEeeeeEEEEECCCCCcc
Confidence 678999999999854333 779999999999875 79999999999766533333
Q ss_pred ------CCceEE-------------------------------------------------EEeeEEEEEeCCCCCCCCE
Q 013277 286 ------SGEGRI-------------------------------------------------RLKKNIKVKVPPGVSTGSI 310 (446)
Q Consensus 286 ------~G~G~v-------------------------------------------------~~~~~l~V~Ip~G~~~G~~ 310 (446)
.|.|.. +....++|+||+|++.|++
T Consensus 226 g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~ 305 (371)
T COG0484 226 GDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEV 305 (371)
T ss_pred CCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcE
Confidence 222222 2334499999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEE
Q 013277 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (446)
Q Consensus 311 i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~ 350 (446)
++|+|+|++..++...|||||+|+|..|..+...+..|+.
T Consensus 306 ~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~ 345 (371)
T COG0484 306 FRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLE 345 (371)
T ss_pred EEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHH
Confidence 9999999998887778999999999999988877766654
No 43
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.69 E-value=2.5e-17 Score=125.63 Aligned_cols=62 Identities=53% Similarity=0.879 Sum_probs=59.1
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHhhcchhhhhhhhh
Q 013277 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYD 139 (446)
Q Consensus 78 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~--~~~~f~~i~~Ay~vL~d~~~r~~yd 139 (446)
|||+||||+++++.+|||++|+++++.+|||++.... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987655 8899999999999999999999998
No 44
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.3e-17 Score=159.52 Aligned_cols=88 Identities=49% Similarity=0.762 Sum_probs=75.3
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCC
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~ 154 (446)
..|||++|||+.+|+.+|||+|||+.|++||||+||+ |.+.++|+++.+||+||+|+.+|+.||++|..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~----- 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ----- 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----
Confidence 5799999999999999999999999999999999994 8899999999999999999999999999997654321
Q ss_pred CCCcCCCcCccccccC
Q 013277 155 SAYTTNPFDLFETFFG 170 (446)
Q Consensus 155 ~~~~~~~~d~F~~fFg 170 (446)
-..++.++|...|+
T Consensus 79 --~~~d~~~~~r~~f~ 92 (296)
T KOG0691|consen 79 --GREDQADGFRKKFG 92 (296)
T ss_pred --hhhhHHHHHHHHhh
Confidence 01345566666655
No 45
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.4e-17 Score=163.67 Aligned_cols=72 Identities=51% Similarity=0.740 Sum_probs=66.2
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhhhhhccccce
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV 146 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~ 146 (446)
+.+.||++|||.++|++.|||++||+||++||||+|++ .+++++|+.|+.||+|||||..|+-||..-++-+
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil 79 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL 79 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence 45689999999999999999999999999999999986 5789999999999999999999999999766544
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.4e-16 Score=144.04 Aligned_cols=69 Identities=51% Similarity=0.828 Sum_probs=63.9
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHhhcchhhhhhhhhhcccc
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE---PGATEKFKEISAAYEVLSDDKKRAMYDQYGEA 144 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~ 144 (446)
.+|+|+||||.++|++.||++||++|++++|||+++. .+++++|++++.||+||+|.++|+.||+.|.-
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 4599999999999999999999999999999999963 46889999999999999999999999998753
No 47
>PHA03102 Small T antigen; Reviewed
Probab=99.61 E-value=4e-16 Score=138.08 Aligned_cols=67 Identities=25% Similarity=0.375 Sum_probs=61.9
Q ss_pred cCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccce
Q 013277 77 GDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV 146 (446)
Q Consensus 77 ~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~ 146 (446)
..+|++|||+++| |.+|||+|||++++++|||+++ ..++|++|++||++|+|+.+|..||.+|....
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 4689999999999 9999999999999999999974 46799999999999999999999999997653
No 48
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=3e-15 Score=152.90 Aligned_cols=119 Identities=34% Similarity=0.686 Sum_probs=92.4
Q ss_pred eeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-----------
Q 013277 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C----------- 285 (446)
...|+.|+|+|.... ....+|+.|+|+|+++. ..|+.|+|.|.+.......+
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 226 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------------DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDR 226 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------------CCCCCCCCCceEeeeeeEEEecCCCCCCCcE
Confidence 468999999997532 23568999999999864 68999999998765433222
Q ss_pred ---CCce----------EE---------------------------------------EEeeEEEEEeCCCCCCCCEEEE
Q 013277 286 ---SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGSILRV 313 (446)
Q Consensus 286 ---~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~l 313 (446)
.|.| .+ ..+..++|+||+|+++|++++|
T Consensus 227 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i 306 (371)
T PRK10767 227 IRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRL 306 (371)
T ss_pred EEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEE
Confidence 2221 11 1233689999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEE
Q 013277 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (446)
Q Consensus 314 ~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~ 352 (446)
+|+|++..+++..|||||+|+|..|+.|++++.+|+.++
T Consensus 307 ~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 307 RGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred CCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999766667899999999999999999998887543
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.59 E-value=2.3e-15 Score=146.22 Aligned_cols=72 Identities=49% Similarity=0.756 Sum_probs=65.0
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~ 147 (446)
..+|||.||||.++|+..||-||||++|.+||||...++ .++++|..|..|-|||+||++|+.||. |+..++
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 467999999999999999999999999999999998764 378899999999999999999999998 555544
No 50
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2e-15 Score=137.95 Aligned_cols=70 Identities=43% Similarity=0.713 Sum_probs=65.5
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccc
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG 145 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~ 145 (446)
..|+||||||+++|+++|||+|||+|.++||||++++ .+.++.|.+|++||+.|+|+..|..|..||...
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 4599999999999999999999999999999999987 567788999999999999999999999999754
No 51
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=2.5e-15 Score=152.96 Aligned_cols=120 Identities=31% Similarity=0.651 Sum_probs=94.3
Q ss_pred ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (446)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+....-.++
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 231 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVVVNEDISVKIPKGA 231 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEEEeeEEEEEECCCC
Confidence 45689999999975322 2468999999999865 78999999998765422222
Q ss_pred --------CCce--------EE---------------------------------------EEeeEEEEEeCCCCCCCCE
Q 013277 286 --------SGEG--------RI---------------------------------------RLKKNIKVKVPPGVSTGSI 310 (446)
Q Consensus 286 --------~G~G--------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~ 310 (446)
.|.| .+ ....+++|+||+|+++|++
T Consensus 232 ~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~ 311 (365)
T PRK14290 232 TDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEV 311 (365)
T ss_pred CCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcE
Confidence 2222 11 2345689999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEE
Q 013277 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (446)
Q Consensus 311 i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~ 352 (446)
++|+|+|++.+++..+|||||+|+|+.|+.|++++.+|+.++
T Consensus 312 iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 312 LKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999776667899999999999999999999987653
No 52
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.58 E-value=2.1e-15 Score=113.25 Aligned_cols=57 Identities=65% Similarity=0.948 Sum_probs=53.4
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHHhhcchhh
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK--EPGATEKFKEISAAYEVLSDDK 133 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~--~~~~~~~f~~i~~Ay~vL~d~~ 133 (446)
.|||++|||+++++.++||+||+++++.+|||++. .+.+.+.|.+|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 37999999999999999999999999999999997 4678899999999999999985
No 53
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.56 E-value=5.9e-15 Score=108.78 Aligned_cols=54 Identities=70% Similarity=1.073 Sum_probs=51.3
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcch
Q 013277 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSD 131 (446)
Q Consensus 78 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d 131 (446)
|||++|||+++++.++||++|+++++++|||++.. +.+.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999976 6788999999999999986
No 54
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=1.5e-14 Score=148.46 Aligned_cols=117 Identities=29% Similarity=0.679 Sum_probs=90.5
Q ss_pred eeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-----------
Q 013277 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C----------- 285 (446)
...|+.|+|+|.... ....+|+.|+|+|+++. ..|+.|+|.|.+...+-.++
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 242 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------------DPCSVCRGQGRIKDKRSVHVHIPAGVDSGMR 242 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------------CcCCCCCCcceecceEEEEEEECCCCCCCCE
Confidence 468999999997532 13569999999999865 68999999998754322222
Q ss_pred ---CCce----------EE---------------------------------------EE--eeEEEEEeCCCCCCCCEE
Q 013277 286 ---SGEG----------RI---------------------------------------RL--KKNIKVKVPPGVSTGSIL 311 (446)
Q Consensus 286 ---~G~G----------~v---------------------------------------~~--~~~l~V~Ip~G~~~G~~i 311 (446)
.|.| .+ .. ...++|+||+|+++|+++
T Consensus 243 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~ 322 (391)
T PRK14284 243 LKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTIL 322 (391)
T ss_pred EEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEE
Confidence 2222 11 22 267899999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEE
Q 013277 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (446)
Q Consensus 312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~ 350 (446)
+|+|+|++...+..+|||||+|+|..|+.++.++.+|+.
T Consensus 323 ~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 361 (391)
T PRK14284 323 KVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLR 361 (391)
T ss_pred EECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHH
Confidence 999999997655678999999999999988887776654
No 55
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=2.3e-14 Score=146.22 Aligned_cols=119 Identities=30% Similarity=0.595 Sum_probs=92.6
Q ss_pred ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (446)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+....-.++
T Consensus 168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~ 235 (369)
T PRK14282 168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------------EYCHECGGSGRIRRRVRTTVKIPAGV 235 (369)
T ss_pred CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------------CCCCCCCCceeEEEEEEEEEEeCCCC
Confidence 34689999999975322 2568999999999865 68999999997655322221
Q ss_pred --------CCce----------EE----------------------------------------EEeeEEEEEeCCCCCC
Q 013277 286 --------SGEG----------RI----------------------------------------RLKKNIKVKVPPGVST 307 (446)
Q Consensus 286 --------~G~G----------~v----------------------------------------~~~~~l~V~Ip~G~~~ 307 (446)
.|+| .+ .+.+.++|+||+|+++
T Consensus 236 ~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~ 315 (369)
T PRK14282 236 EDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQP 315 (369)
T ss_pred CCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCC
Confidence 2222 11 2245789999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEE
Q 013277 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (446)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~ 351 (446)
|++++|+|+|++...++.+|||||+|+|+.|+.|++++.+|+.+
T Consensus 316 g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~ 359 (369)
T PRK14282 316 ETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE 359 (369)
T ss_pred CCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999975555689999999999999999999988654
No 56
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=6.1e-14 Score=143.26 Aligned_cols=119 Identities=34% Similarity=0.625 Sum_probs=91.9
Q ss_pred eeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277 222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------- 285 (446)
...|+.|+|+|..... ...+|+.|+|+|.++. ..|+.|+|.|.+...+-..+
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~~ 225 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------------SPCPVCSGTGKVRKTRKITVNVPAGAD 225 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------------CCCCCCCCccEEEEEEEEEecCCCCCC
Confidence 4679999999975322 2678999999998765 68999999998765422222
Q ss_pred -------CCce----------EE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277 286 -------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (446)
Q Consensus 286 -------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~ 309 (446)
.|.| .+ ..+..++|+||+|+++|+
T Consensus 226 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~ 305 (377)
T PRK14298 226 SGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHS 305 (377)
T ss_pred CCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCC
Confidence 2221 11 123348999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEE
Q 013277 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (446)
Q Consensus 310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~ 352 (446)
+++|+|+|++..++...|||||+|+|+.|+.|++++.+|+.++
T Consensus 306 ~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 306 VFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999766556899999999999999999998886543
No 57
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=6.8e-14 Score=142.42 Aligned_cols=118 Identities=24% Similarity=0.528 Sum_probs=91.7
Q ss_pred eeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-----------
Q 013277 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C----------- 285 (446)
...|+.|+|+|.... ....+|+.|+|+|.++. ..|+.|+|.|.+.+..-.++
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 230 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------------NPCKSCKGKGSLKKKETIELKIPAGIDDNQQ 230 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCcccccC------------CCCCCCCCCCEEeccEEEEEEECCCCCCCCE
Confidence 467999999996532 23679999999999865 68999999998765422222
Q ss_pred ---CCc----------eEE----------------------------------------EEeeEEEEEeCCCCCCCCEEE
Q 013277 286 ---SGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (446)
Q Consensus 286 ---~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (446)
.|. |.. .+.+.++|+||+|+++|++++
T Consensus 231 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~ir 310 (365)
T PRK14285 231 IKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQII 310 (365)
T ss_pred EEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEE
Confidence 111 221 233579999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEE
Q 013277 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (446)
Q Consensus 313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~ 351 (446)
|+|+|++.+.+...|||||+|+|+.|+.|++++..|+..
T Consensus 311 l~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 311 IKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred ECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999976555579999999999999999988776543
No 58
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=7.5e-14 Score=142.29 Aligned_cols=118 Identities=31% Similarity=0.605 Sum_probs=91.8
Q ss_pred eeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-----------
Q 013277 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C----------- 285 (446)
...|+.|+|+|.... ....+|+.|+|+|+.+. ..|+.|+|.|.+....-.++
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 228 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------------SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSR 228 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------------cCCCCCCCceEeecceeEEEecCCCCcCCcE
Confidence 468999999997532 13679999999999864 68999999998765322221
Q ss_pred ---CCce----------EE---------------------------------------EEeeEEEEEeCCCCCCCCEEEE
Q 013277 286 ---SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGSILRV 313 (446)
Q Consensus 286 ---~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~l 313 (446)
.|.| .+ ..+..++|.||+|+++|++++|
T Consensus 229 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri 308 (366)
T PRK14294 229 LRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRF 308 (366)
T ss_pred EEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEE
Confidence 2222 11 1234579999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEE
Q 013277 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (446)
Q Consensus 314 ~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~ 351 (446)
+|+|++...+..+|||||+|+|..|+.|++++.+|+..
T Consensus 309 ~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 346 (366)
T PRK14294 309 KGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTE 346 (366)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999976655789999999999999999999888754
No 59
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.44 E-value=1.6e-13 Score=105.29 Aligned_cols=65 Identities=49% Similarity=1.107 Sum_probs=54.6
Q ss_pred cccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEe-ceeeeecCCce
Q 013277 225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI-SEYCRKCSGEG 289 (446)
Q Consensus 225 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-~~~C~~C~G~G 289 (446)
|+.|+|+|++......+|+.|+|+|+++...+.+++++++..+|+.|+|+|+++ +++|+.|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 899999999988899999999999999988888888888899999999999999 99999999976
No 60
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.6e-13 Score=140.09 Aligned_cols=117 Identities=26% Similarity=0.554 Sum_probs=89.5
Q ss_pred ceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec----------
Q 013277 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (446)
....|+.|+|+|.... ....+|+.|+|+|.++. ..|+.|+|.|++....-.++
T Consensus 161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 228 (372)
T PRK14300 161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------------NPCKKCHGMGRYHKQRNLSVNIPAGVENGT 228 (372)
T ss_pred CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------------CCCCCCCCceEEEeeEEEEEEECCCCCCCc
Confidence 3468999999997532 13568999999999875 68999999999755322222
Q ss_pred ----CCc----------eEE----------------------------------------EEeeEEEEEeCCCCCCCCEE
Q 013277 286 ----SGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSIL 311 (446)
Q Consensus 286 ----~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i 311 (446)
.|. |.+ .+.+.++|+||+|+++|+++
T Consensus 229 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~i 308 (372)
T PRK14300 229 RIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQL 308 (372)
T ss_pred EEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEE
Confidence 121 222 12357999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
+|+|+|++.+++..+|||||+|+|+.|..|+.++..|+
T Consensus 309 ri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l 346 (372)
T PRK14300 309 RLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELL 346 (372)
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 99999999766567899999999999988776665554
No 61
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.6e-13 Score=140.04 Aligned_cols=118 Identities=29% Similarity=0.562 Sum_probs=90.0
Q ss_pred ceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec----------
Q 013277 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (446)
....|+.|+|+|.... ....+|+.|+|+|+++. ..|+.|+|.|.+.+..-.++
T Consensus 160 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 227 (373)
T PRK14301 160 SPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------------HPCPKCKGSGIVQQTRELKVRIPAGVDTGS 227 (373)
T ss_pred CCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------------CCCCCCCCCceeccceEEEEEeCCCCcCCC
Confidence 3467999999997532 23679999999999865 68999999998755322221
Q ss_pred ----CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCCEEE
Q 013277 286 ----SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (446)
Q Consensus 286 ----~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (446)
.|. |.+ ..+..++|+||+|+++|++++
T Consensus 228 ~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~r 307 (373)
T PRK14301 228 RLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFR 307 (373)
T ss_pred EEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEE
Confidence 121 221 123448999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEE
Q 013277 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (446)
Q Consensus 313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~ 350 (446)
|+|+|++...+..+|||||+|+|..|+.++.++.+|+.
T Consensus 308 i~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~ 345 (373)
T PRK14301 308 LRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLR 345 (373)
T ss_pred EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 99999997665668999999999999888877766654
No 62
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=3.1e-13 Score=137.82 Aligned_cols=117 Identities=23% Similarity=0.511 Sum_probs=89.0
Q ss_pred ceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec----------
Q 013277 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (446)
....|+.|+|+|.... ....+|+.|+|+|+++. ..|+.|+|.|.+....-.+.
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~ 222 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYILKDEEIDAIIPEGIDDQN 222 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceEEEEEEEEEecCCCCCCCC
Confidence 4578999999997532 22568999999999865 68999999998765432222
Q ss_pred ----CCceE---------E----------------------------------------EEeeEEEEEeCCCCCCCCEEE
Q 013277 286 ----SGEGR---------I----------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (446)
Q Consensus 286 ----~G~G~---------v----------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (446)
.|.|. + .+.+.++|+||+|+++|++++
T Consensus 223 ~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~ 302 (369)
T PRK14288 223 RMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA 302 (369)
T ss_pred EEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence 22211 1 224568999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
|+|+|++.+.+...|||||+|+|+.|+.++.+...++
T Consensus 303 i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 339 (369)
T PRK14288 303 FRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELL 339 (369)
T ss_pred EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999765445799999999999988877765544
No 63
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=3.3e-13 Score=138.01 Aligned_cols=117 Identities=29% Similarity=0.601 Sum_probs=88.7
Q ss_pred ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (446)
....|+.|+|+|..... ...+|+.|+|+|.++. .+|+.|+|.|.+...+-.++
T Consensus 155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 222 (378)
T PRK14278 155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------------DPCHECAGDGRVRARREITVKIPAGV 222 (378)
T ss_pred CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------------CCCCCCCCceeEecceEEEEEECCCC
Confidence 34689999999975322 2568999999999865 68999999998765422222
Q ss_pred --------CCc----------eEE----------------------------------------EEeeEEEEEeCCCCCC
Q 013277 286 --------SGE----------GRI----------------------------------------RLKKNIKVKVPPGVST 307 (446)
Q Consensus 286 --------~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~ 307 (446)
.|. |.+ .+.+.++|+||+|+++
T Consensus 223 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~ 302 (378)
T PRK14278 223 GDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQP 302 (378)
T ss_pred CCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCC
Confidence 221 222 1256789999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
|++++|+|+|++...++..|||||+|+|..|..++.+...|+
T Consensus 303 g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 344 (378)
T PRK14278 303 GSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELL 344 (378)
T ss_pred CcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence 999999999999765566899999999999887666655443
No 64
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=3.3e-13 Score=137.71 Aligned_cols=116 Identities=32% Similarity=0.550 Sum_probs=88.5
Q ss_pred eeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeee------------
Q 013277 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK------------ 284 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~------------ 284 (446)
...|+.|+|+|.... ....+|+.|+|+|+++. ..|+.|+|.|.+.+..-..
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ 234 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------------NPCKTCGGQGLQEKRRTINIKIPPGVETGSR 234 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------------ccCCCCCCCcEEecceEEEEEECCCCCCCCE
Confidence 467999999997532 23668999999999875 6899999999876532111
Q ss_pred --cCCc----------eEE----------------------------------------EEeeEEEEEeCCCCCCCCEEE
Q 013277 285 --CSGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (446)
Q Consensus 285 --C~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (446)
..|. |.+ .+.+.++|+||+|+++|++++
T Consensus 235 i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~r 314 (372)
T PRK14286 235 LKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFR 314 (372)
T ss_pred EEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEE
Confidence 1221 222 124568999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
|+|+|++..++...|||||+|+|..|..++.++.+|+
T Consensus 315 i~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 351 (372)
T PRK14286 315 LKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI 351 (372)
T ss_pred ECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 9999999765556899999999999987777666554
No 65
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.8e-13 Score=138.24 Aligned_cols=119 Identities=30% Similarity=0.630 Sum_probs=90.9
Q ss_pred ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (446)
....|+.|+|+|..... ...+|+.|+|+|.++. ..|..|+|.|.+.......+
T Consensus 154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~ 221 (371)
T PRK14287 154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------------QKCATCGGKGKVRKRKKINVKVPAGI 221 (371)
T ss_pred CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------------ccCCCCCCeeEEeeeEEEEEEECCcC
Confidence 34679999999975322 2568999999999865 68999999998754432222
Q ss_pred --------CCce----------EE---------------------------------------EEeeEEEEEeCCCCCCC
Q 013277 286 --------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTG 308 (446)
Q Consensus 286 --------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (446)
.|.| .+ ..+..++|+||+|+++|
T Consensus 222 ~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g 301 (371)
T PRK14287 222 DHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTG 301 (371)
T ss_pred CCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCC
Confidence 2221 11 12345899999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEE
Q 013277 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (446)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~ 351 (446)
++++|+|+|++...++..|||||+|+|..|+.++++...|+.+
T Consensus 302 ~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 344 (371)
T PRK14287 302 TSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMRE 344 (371)
T ss_pred cEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 9999999999976656689999999999999988888766543
No 66
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.3e-13 Score=128.48 Aligned_cols=70 Identities=41% Similarity=0.772 Sum_probs=66.7
Q ss_pred ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhc
Q 013277 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141 (446)
Q Consensus 72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 141 (446)
..+...|.|++|||+++|+..||++|||+||+++|||+++++++.+.|..|.+||++|.|.+.|..||-+
T Consensus 28 LYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 28 LYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred hcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 6677789999999999999999999999999999999999999999999999999999999999999965
No 67
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=4.6e-13 Score=137.51 Aligned_cols=116 Identities=29% Similarity=0.606 Sum_probs=87.3
Q ss_pred ceeecccccCCccccCc-----ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec----------
Q 013277 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (446)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|..|+|.|.+.+.+-.++
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 256 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTTRTRTINVRIPPGVEDGQ 256 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEEEeeeeEEEeCCCCCCCc
Confidence 35789999999975332 2579999999999875 68999999998765322221
Q ss_pred ----CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCCEEE
Q 013277 286 ----SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (446)
Q Consensus 286 ----~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (446)
.|. |.+ ..+..++|+||+|+++|++++
T Consensus 257 ~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~ir 336 (392)
T PRK14279 257 RIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILR 336 (392)
T ss_pred EEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEE
Confidence 121 222 123458999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
|+|+|++.. ++..|||||+|+|..|+.+..+...|+
T Consensus 337 i~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~~l 372 (392)
T PRK14279 337 VRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAEAL 372 (392)
T ss_pred ECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 999999964 456899999999999987666555443
No 68
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=3.7e-13 Score=137.77 Aligned_cols=116 Identities=25% Similarity=0.561 Sum_probs=87.6
Q ss_pred eeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277 222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------- 285 (446)
...|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+.+....++
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 230 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------------EPCQTCHGTGHEKQAHTVSVKIPAGVE 230 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------------CCCCCCCCceEEEEEEEEEEEeCCCcc
Confidence 4679999999975322 2568999999999875 68999999998755422222
Q ss_pred -------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277 286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (446)
Q Consensus 286 -------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~ 309 (446)
.|. |.+ ..+..++|+||+|+++|+
T Consensus 231 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~ 310 (380)
T PRK14276 231 TGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGK 310 (380)
T ss_pred CCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 121 221 123458999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
+++|+|+|++...+..+|||||+|+|..|..+..+...++
T Consensus 311 ~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l 350 (380)
T PRK14276 311 KFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEAL 350 (380)
T ss_pred EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999999765566899999999999987766665443
No 69
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=4.9e-13 Score=137.61 Aligned_cols=117 Identities=33% Similarity=0.685 Sum_probs=88.1
Q ss_pred ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (446)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+....-.++
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 245 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQGEVTVKVTVPAGV 245 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEecceEEEEecCCCC
Confidence 35689999999975322 2568999999999875 68999999998765422222
Q ss_pred --------CCceE----------E---------------------------------------EEeeEEEEEeCCCCCCC
Q 013277 286 --------SGEGR----------I---------------------------------------RLKKNIKVKVPPGVSTG 308 (446)
Q Consensus 286 --------~G~G~----------v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (446)
.|.|. + ..+..++|+||+|+++|
T Consensus 246 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G 325 (397)
T PRK14281 246 QDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPE 325 (397)
T ss_pred CCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCC
Confidence 22211 1 12345899999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
++++|+|+|++..+++..|||||+|+|..|..++.++..|+
T Consensus 326 ~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 366 (397)
T PRK14281 326 TMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELL 366 (397)
T ss_pred cEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence 99999999999766567899999999999887666555443
No 70
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.39 E-value=4.6e-13 Score=136.06 Aligned_cols=116 Identities=33% Similarity=0.728 Sum_probs=88.6
Q ss_pred eeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277 222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------- 285 (446)
...|..|+|+|..... ...+|+.|+|+|++++ ..|+.|+|.|.+....-...
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 227 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------------EPCSTCKGKGRVKERKTITVKIPAGVD 227 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------------CCCCCCCCCcEecccceEEEEECCCCC
Confidence 5679999999964322 2569999999999865 67999999998755322111
Q ss_pred -------CCce----------EE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277 286 -------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (446)
Q Consensus 286 -------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~ 309 (446)
.|.| .+ ..+..++|.||+|+++|+
T Consensus 228 ~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~ 307 (354)
T TIGR02349 228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGT 307 (354)
T ss_pred CCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCc
Confidence 2222 11 112368999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
+++|+|+|++...+..+|||||+|+|..|+.+++++.+++
T Consensus 308 ~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l 347 (354)
T TIGR02349 308 VFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL 347 (354)
T ss_pred EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999999766567899999999999998888876654
No 71
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4e-13 Score=133.52 Aligned_cols=90 Identities=41% Similarity=0.670 Sum_probs=72.4
Q ss_pred ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC
Q 013277 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG 151 (446)
Q Consensus 74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~ 151 (446)
...+|||.|||+.++|+..|||+|||++|+.+|||++.. .+++.+|+++.+||.+|+||.+|..||.- .. +.....
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg-~d-le~~~~ 447 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG-QD-LEEVGS 447 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc-cc-hhhhcC
Confidence 346799999999999999999999999999999999864 57889999999999999999999999983 11 111111
Q ss_pred CCCCCCcCCCcCccccc
Q 013277 152 GGSSAYTTNPFDLFETF 168 (446)
Q Consensus 152 ~~~~~~~~~~~d~F~~f 168 (446)
+ +-+.+|+++|..|
T Consensus 448 ~---~a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 448 G---GAGFDPFNIFRAF 461 (486)
T ss_pred C---CcCcChhhhhhhc
Confidence 1 1245778877766
No 72
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=9.2e-13 Score=134.69 Aligned_cols=117 Identities=33% Similarity=0.645 Sum_probs=87.1
Q ss_pred ceeecccccCCccccC---------cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277 221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (446)
....|+.|+|+|.... ....+|+.|+|+|.++. ..|+.|+|.|.+.+..-..+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~ 226 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------------EKCPTCHGKGKVRKRKKINVKIPAGV 226 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------------CCCCCCCCceEEEEEEEEEEEeCCCC
Confidence 3467999999997532 13568999999999865 68999999998754322221
Q ss_pred --------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCC
Q 013277 286 --------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTG 308 (446)
Q Consensus 286 --------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (446)
.|. |.+ ..+..++|+||+|+++|
T Consensus 227 ~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g 306 (376)
T PRK14280 227 DNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTG 306 (376)
T ss_pred cCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCC
Confidence 121 221 12345899999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
++++|+|+|++...+...|||||+|+|..|..++.+...|+
T Consensus 307 ~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l 347 (376)
T PRK14280 307 TQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELL 347 (376)
T ss_pred cEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 99999999999765556899999999999887666555443
No 73
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=9.4e-13 Score=134.60 Aligned_cols=118 Identities=26% Similarity=0.536 Sum_probs=89.8
Q ss_pred eeecccccCCccccC---------cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------- 285 (446)
...|+.|+|+|.... ....+|+.|+|+|+++. ..|..|+|.|.+.+..-..+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~IppG~~ 227 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------------DPCDACGGQGVKQVTKKLKINIPAGVD 227 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------------cCCCCCCCCcccccceEEEEEeCCCCC
Confidence 468999999997532 12568999999999865 68999999998654322111
Q ss_pred -------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277 286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (446)
Q Consensus 286 -------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~ 309 (446)
.|. |.. ..+..++|+||+|+++|+
T Consensus 228 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~ 307 (374)
T PRK14293 228 TGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNT 307 (374)
T ss_pred CCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCC
Confidence 121 222 123347899999999999
Q ss_pred EEEEccCCCCCCCC-CCCccEEEEEEEEeccCcccCCcceEEE
Q 013277 310 ILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (446)
Q Consensus 310 ~i~l~g~G~~~~~g-~~~GDL~v~i~v~~~~~f~R~g~dL~~~ 351 (446)
+++|+|+|.+...+ +..|||||+|+|..|+.+++++.+|+.+
T Consensus 308 ~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~ 350 (374)
T PRK14293 308 VLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEK 350 (374)
T ss_pred EEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999997544 3579999999999999999999887654
No 74
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.36 E-value=9.5e-13 Score=119.87 Aligned_cols=64 Identities=31% Similarity=0.542 Sum_probs=56.8
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277 77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (446)
Q Consensus 77 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~ 140 (446)
.|||++|||++. ++.++|+++||++++++|||+..... +.+.|..||+||++|+||.+|+.|+-
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999995 78899999999999999999976432 45689999999999999999999985
No 75
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.36 E-value=8.9e-13 Score=119.33 Aligned_cols=65 Identities=31% Similarity=0.465 Sum_probs=56.9
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhcchhhhhhhhhhc
Q 013277 77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMYDQY 141 (446)
Q Consensus 77 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 141 (446)
.|||++|||++. ++.++|+++||++++++|||++..+. +.+.+..||+||++|+||.+|+.|+.-
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 489999999996 78999999999999999999986432 234578999999999999999999864
No 76
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=1.2e-12 Score=134.42 Aligned_cols=116 Identities=32% Similarity=0.628 Sum_probs=87.0
Q ss_pred eeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277 222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------- 285 (446)
...|..|+|+|..... ...+|+.|+|+|.++. ..|+.|+|.|.+.+..-.++
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 239 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------------DPCNKCGGTGRIRRRRKIKVNIPAGID 239 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------------CCCCCCCCCcEEeeeeEEEEecCCCcc
Confidence 4689999999975321 2468999999999865 68999999998755422222
Q ss_pred -------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277 286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (446)
Q Consensus 286 -------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~ 309 (446)
.|. |.+ ..+..++|.||+|+++|+
T Consensus 240 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~ 319 (386)
T PRK14277 240 DGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGT 319 (386)
T ss_pred CCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCC
Confidence 222 221 112347999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
+++|+|+|++..++...|||||+|+|..|..++.+..+++
T Consensus 320 ~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l 359 (386)
T PRK14277 320 KFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELL 359 (386)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHH
Confidence 9999999999765556899999999999887666655543
No 77
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=1.1e-12 Score=134.52 Aligned_cols=116 Identities=28% Similarity=0.576 Sum_probs=86.9
Q ss_pred eeecccccCCccccC---------cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------- 285 (446)
...|+.|+|+|.... ....+|+.|+|+|.++. ..|..|+|.|.+....-...
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 232 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------------DPCNKCHGKGKVRKNRKIKVNVPAGVD 232 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------------CCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence 567999999997532 23678999999998865 68999999997654322222
Q ss_pred -------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277 286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (446)
Q Consensus 286 -------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~ 309 (446)
.|. |.+ ..+..++|+||+|+++|+
T Consensus 233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~ 312 (380)
T PRK14297 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGT 312 (380)
T ss_pred CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCC
Confidence 111 111 123458999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
+++|+|+|++..+++..|||||+|+|..|..+..+...++
T Consensus 313 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 352 (380)
T PRK14297 313 VFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEAL 352 (380)
T ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHH
Confidence 9999999999766567899999999999987666555443
No 78
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=1.4e-12 Score=133.93 Aligned_cols=116 Identities=30% Similarity=0.584 Sum_probs=87.3
Q ss_pred ceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec----------
Q 013277 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (446)
....|+.|+|+|.... ....+|+.|+|+|+++. .+|..|.|.|.+....-.++
T Consensus 182 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~ 249 (389)
T PRK14295 182 TPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQ 249 (389)
T ss_pred CCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceEeeeeEEEEEeCCCCCCCC
Confidence 3468999999997532 23568999999999875 68999999998755322221
Q ss_pred ----CCc----------eEE----------------------------------------EEeeEEEEEeCCCCCCCCEE
Q 013277 286 ----SGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSIL 311 (446)
Q Consensus 286 ----~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i 311 (446)
.|. |.+ .+.+.++|+||+|+++|+++
T Consensus 250 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~i 329 (389)
T PRK14295 250 RIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVL 329 (389)
T ss_pred EEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEE
Confidence 121 222 12357999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
+|+|+|++.. ++.+|||||+|+|..|..+..++..|+
T Consensus 330 ri~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~l 366 (389)
T PRK14295 330 RVRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREAL 366 (389)
T ss_pred EECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999964 456899999999999987666655544
No 79
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=1.5e-12 Score=132.88 Aligned_cols=116 Identities=22% Similarity=0.537 Sum_probs=85.7
Q ss_pred eeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277 222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------- 285 (446)
...|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+.+..-.++
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 233 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------------NKCKNCKGKGKYLERKKIEVNIPKGIR 233 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------------ccccCCCCceEEEEEEEEEEEECCCCC
Confidence 4679999999976432 2468999999999875 68999999997654322221
Q ss_pred -------CCce----------EE----------------------------------------EEeeEEEEEeCCCCCCC
Q 013277 286 -------SGEG----------RI----------------------------------------RLKKNIKVKVPPGVSTG 308 (446)
Q Consensus 286 -------~G~G----------~v----------------------------------------~~~~~l~V~Ip~G~~~G 308 (446)
.|.| .+ ..+..++|+||+|+++|
T Consensus 234 ~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g 313 (372)
T PRK14296 234 PNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSN 313 (372)
T ss_pred CCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCC
Confidence 1211 11 12334899999999999
Q ss_pred CEEEEccCCCCCC-CCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 309 SILRVVGEGDAGP-RGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 309 ~~i~l~g~G~~~~-~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
++++|+|+|++.. +++..|||||+|+|+.|..+..+...|+
T Consensus 314 ~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l 355 (372)
T PRK14296 314 ELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELI 355 (372)
T ss_pred cEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999999843 2345799999999999887766655543
No 80
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=1.4e-12 Score=133.83 Aligned_cols=116 Identities=30% Similarity=0.600 Sum_probs=87.6
Q ss_pred ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (446)
....|+.|+|+|..... ...+|+.|+|+|.++. ..|+.|+|.|.+....-.++
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 237 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK------------KKCKKCGGEGIVYGEEVITVKIPAGV 237 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC------------cCCCCCCCCcEEeeeEEEEEEeCCCC
Confidence 45789999999986432 2568999999998865 68999999998765422221
Q ss_pred --------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCC
Q 013277 286 --------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTG 308 (446)
Q Consensus 286 --------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (446)
.|. |.. .....++|.||+|+++|
T Consensus 238 ~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g 317 (386)
T PRK14289 238 AEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPG 317 (386)
T ss_pred CCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCC
Confidence 222 211 22345899999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcce
Q 013277 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (446)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL 348 (446)
++++|+|+|.+.++++..|||||+|+|+.|..+..++..|
T Consensus 318 ~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~ 357 (386)
T PRK14289 318 KVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQT 357 (386)
T ss_pred cEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHH
Confidence 9999999999976666789999999999887666555444
No 81
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=7.6e-13 Score=132.86 Aligned_cols=67 Identities=42% Similarity=0.606 Sum_probs=64.7
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g 142 (446)
.+|+|.+|||+.++++++||+.||++|...|||||..+.|++.|+.++.||++|+|+++|..||.--
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999999999854
No 82
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.32 E-value=2.4e-12 Score=132.90 Aligned_cols=118 Identities=24% Similarity=0.535 Sum_probs=87.4
Q ss_pred ceeecccccCCccccC---------cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277 221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------ 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------ 285 (446)
....|+.|+|+|.... ....+|+.|+|+|+++... .+|+.|+|.|.+....-.++
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~v~~~~~l~V~Ip~G~ 234 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES----------KKCKNCSGKGVKKTRKILEVNIDKGV 234 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc----------ccCCcCCCcceeeeeeEEEEeeCCCC
Confidence 4568999999996422 1356899999999987532 68999999998765422222
Q ss_pred --------CCceE---------E----------------------------------------EEeeEEEEEeCCC--CC
Q 013277 286 --------SGEGR---------I----------------------------------------RLKKNIKVKVPPG--VS 306 (446)
Q Consensus 286 --------~G~G~---------v----------------------------------------~~~~~l~V~Ip~G--~~ 306 (446)
.|.|. + .+.+.++|+||+| ++
T Consensus 235 ~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~ 314 (421)
T PTZ00037 235 PNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVK 314 (421)
T ss_pred CCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccC
Confidence 23222 1 2345799999999 99
Q ss_pred CCCEEEEccCCCCCCCC-CCCccEEEEEEEEec--cCcccCCcce
Q 013277 307 TGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEI--PGIQRDGIDL 348 (446)
Q Consensus 307 ~G~~i~l~g~G~~~~~g-~~~GDL~v~i~v~~~--~~f~R~g~dL 348 (446)
+|++++|+|+|++..++ +..|||||+|+|..| ..++.+...|
T Consensus 315 pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~l 359 (421)
T PTZ00037 315 PGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEI 359 (421)
T ss_pred CCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHH
Confidence 99999999999996543 457999999999988 6666555443
No 83
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=3.3e-12 Score=130.61 Aligned_cols=118 Identities=26% Similarity=0.564 Sum_probs=89.3
Q ss_pred ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceee---------
Q 013277 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYC--------- 282 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C--------- 282 (446)
....|..|+|+|..... ...+|+.|+|.|..+. ..|+.|+|.|.+....-
T Consensus 156 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 223 (371)
T PRK14292 156 PPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT------------DPCTVCRGRGRTLKAETVKVKLPRGI 223 (371)
T ss_pred CCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC------------CCCCCCCCceEEeecceEEEEECCCC
Confidence 35789999999976422 2468999999998764 78999999998754311
Q ss_pred -----eecCCce--------EE---------------------------------------EEeeEEEEEeCCCCCCCCE
Q 013277 283 -----RKCSGEG--------RI---------------------------------------RLKKNIKVKVPPGVSTGSI 310 (446)
Q Consensus 283 -----~~C~G~G--------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~ 310 (446)
....|.| .+ ..+..++|.||+|+++|++
T Consensus 224 ~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~ 303 (371)
T PRK14292 224 DEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDL 303 (371)
T ss_pred CCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcE
Confidence 1223333 22 1123357999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEE
Q 013277 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (446)
Q Consensus 311 i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~ 350 (446)
++|+|+|++..++..+|||||+|+|+.|+.++.+...|+.
T Consensus 304 ~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14292 304 HRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE 343 (371)
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 9999999997766678999999999999988877766543
No 84
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=2.3e-12 Score=131.96 Aligned_cols=116 Identities=28% Similarity=0.611 Sum_probs=87.1
Q ss_pred eeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277 222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------- 285 (446)
...|+.|+|+|..... ...+|+.|+|+|+.+. ..|..|+|.|.+.......+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~~ 230 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE------------KPCSNCHGKGVVRETKTISVKIPAGVE 230 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC------------CCCCCCCCceeeccceeEEEEECCCCC
Confidence 4679999999986422 2568999999998864 68999999998755422222
Q ss_pred -------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277 286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (446)
Q Consensus 286 -------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~ 309 (446)
.|. |.. ..+..++|.||+|+++|+
T Consensus 231 ~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~ 310 (378)
T PRK14283 231 TGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGT 310 (378)
T ss_pred CCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCC
Confidence 111 111 123368999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
+++|+|+|++...+...|||||+|+|..|+.++.++..|+
T Consensus 311 ~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll 350 (378)
T PRK14283 311 TFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELL 350 (378)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHH
Confidence 9999999999765556899999999998877666655444
No 85
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.32 E-value=1.8e-12 Score=109.10 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=48.6
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcc
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS 130 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~ 130 (446)
...++|+||||+++|+.+|||++||+|++++|||+. ++.+.|++|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 346999999999999999999999999999999985 56788999999999985
No 86
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.31 E-value=3.6e-12 Score=115.97 Aligned_cols=66 Identities=27% Similarity=0.401 Sum_probs=58.5
Q ss_pred cCcCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277 75 ASGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~ 140 (446)
...|||++|||++. .+.++|+++||++++++|||++.... +.+.+..||+||++|+||.+|+.|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 35799999999996 67899999999999999999986432 45679999999999999999999996
No 87
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=9.5e-12 Score=127.54 Aligned_cols=106 Identities=35% Similarity=0.666 Sum_probs=80.8
Q ss_pred ceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec----------
Q 013277 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C---------- 285 (446)
....|+.|+|+|.... ....+|+.|+|+|. +. ..|+.|+|.|.+....-.+.
T Consensus 172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 238 (382)
T PRK14291 172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR------------EPCSKCNGRGLVIKKETIKVRIPPGVDNGS 238 (382)
T ss_pred CCccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec------------cCCCCCCCCceEEeeeEEEEEeCCCCCCCC
Confidence 3567999999997532 23678999999994 33 68999999998765422222
Q ss_pred ----CCceE----------E----------------------------------------EEeeEEEEEeCCCCCCCCEE
Q 013277 286 ----SGEGR----------I----------------------------------------RLKKNIKVKVPPGVSTGSIL 311 (446)
Q Consensus 286 ----~G~G~----------v----------------------------------------~~~~~l~V~Ip~G~~~G~~i 311 (446)
.|.|. + .+.+.++|+||+|+++|+++
T Consensus 239 ~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i 318 (382)
T PRK14291 239 KLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKI 318 (382)
T ss_pred EEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEE
Confidence 22221 1 12356899999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEecc
Q 013277 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIP 339 (446)
Q Consensus 312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~ 339 (446)
+|+|+|++...+..+|||||+|+|..|.
T Consensus 319 ~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 319 RVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 9999999976655689999999999886
No 88
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.29 E-value=5.7e-12 Score=115.11 Aligned_cols=65 Identities=31% Similarity=0.444 Sum_probs=56.5
Q ss_pred CcCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-c-----hHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEP-G-----ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (446)
Q Consensus 76 ~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~-~-----~~~~f~~i~~Ay~vL~d~~~r~~yd~ 140 (446)
..|||++|||++. ++..+|+++||+|++++|||++... . +.+.+..||+||++|+||.+|+.|+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 4699999999985 6899999999999999999998642 2 23446899999999999999999995
No 89
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.17 E-value=2.2e-11 Score=118.67 Aligned_cols=56 Identities=46% Similarity=0.614 Sum_probs=50.7
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHhhcch
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVLSD 131 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--------~~~~~~f~~i~~Ay~vL~d 131 (446)
-.|+|++|||++++|.+|||+|||+|+++||||++.. +.++++|++|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999642 2477899999999999986
No 90
>PHA02624 large T antigen; Provisional
Probab=99.14 E-value=3.4e-11 Score=126.84 Aligned_cols=60 Identities=32% Similarity=0.538 Sum_probs=56.4
Q ss_pred CcCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhh
Q 013277 76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138 (446)
Q Consensus 76 ~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~y 138 (446)
..++|++|||+++| +.+|||+|||++|++||||++ ++.++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 45899999999999 999999999999999999996 4578999999999999999999998
No 91
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.08 E-value=9.3e-11 Score=117.30 Aligned_cols=71 Identities=37% Similarity=0.629 Sum_probs=64.7
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~ 147 (446)
.|+||||||+.+++..+||++||+|..+||||+.+. .+-++.+.+|++||+.|+|...|+.|-.||.....
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 499999999999999999999999999999999764 34678999999999999999999999999976544
No 92
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=6.8e-10 Score=109.88 Aligned_cols=91 Identities=25% Similarity=0.378 Sum_probs=76.6
Q ss_pred cccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCC
Q 013277 341 IQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419 (446)
Q Consensus 341 f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~l 419 (446)
+.|+|.||++++.|||.||++|++++| +++|. ++|+||+|+++|++++++|+|++. |||||+|+|+-++.+
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~~f 196 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG-------GDLYLVVRLLPHPVF 196 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC-------CCEEEEEEEcCCCCe
Confidence 457899999999999999999999998 67884 689999999999999999999962 999999999988877
Q ss_pred CcchHHHHHHHhhccchhee
Q 013277 420 RYVYSPSLTIIQLNSVIILL 439 (446)
Q Consensus 420 s~~~~~~l~~l~~~~~~~~~ 439 (446)
..+...++..+.+..+++++
T Consensus 197 ~R~G~DL~~~~~Isl~eAl~ 216 (291)
T PRK14299 197 RLEGDDLYATVDVPAPIAVV 216 (291)
T ss_pred EEECCEEEEEEecCHHHHhC
Confidence 76666666555555555544
No 93
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.92 E-value=1.1e-09 Score=87.60 Aligned_cols=50 Identities=42% Similarity=0.761 Sum_probs=39.5
Q ss_pred eEEEEEeCCCCCCCCEEEEccCCCCCCCCC-CCccEEEEEEEEeccCcccC
Q 013277 295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGG-PPGDLYVYLDVEEIPGIQRD 344 (446)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~-~~GDL~v~i~v~~~~~f~R~ 344 (446)
+.++|+||+|+++|++++++|+|.+...+. ..|||||+++|..+..++.+
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~ 77 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPE 77 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHH
Confidence 478899999999999999999999866555 79999999999988877644
No 94
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.88 E-value=3.5e-09 Score=96.43 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=56.0
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277 77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (446)
Q Consensus 77 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~ 140 (446)
.|||++||+++. .+..+++++|++|.+++|||+....+ +.+.-..||+||.+|+||.+|+.|=-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 489999999985 89999999999999999999986533 34467899999999999999998854
No 95
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.84 E-value=4.5e-09 Score=94.49 Aligned_cols=53 Identities=30% Similarity=0.447 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhhc
Q 013277 89 ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQY 141 (446)
Q Consensus 89 as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 141 (446)
.+.++|+++||++++++|||+..... +.+.+..||+||++|+||.+|+.|+.-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 47889999999999999999865422 567899999999999999999999974
No 96
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=6e-09 Score=98.28 Aligned_cols=71 Identities=39% Similarity=0.477 Sum_probs=62.8
Q ss_pred ecccCcCchhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277 72 VVCASGDYYATLGVPK---SASGKEIKAAYRKLARQYHPDVNK---EPGATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (446)
Q Consensus 72 ~~~~~~d~Y~iLgv~~---~as~~eIk~ayr~l~~~~HPD~~~---~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g 142 (446)
..|...|+|.+|||+. .|++.+|.+|.++.+.+||||+.. +.+..+.|+.|+.||+||+|+.+|..||.--
T Consensus 38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 4566789999999986 788999999999999999999973 3567899999999999999999999999843
No 97
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2e-08 Score=99.36 Aligned_cols=105 Identities=28% Similarity=0.558 Sum_probs=79.8
Q ss_pred ecccccCCccccCcc----------eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------C
Q 013277 224 TCEVCTGTGAKMGSK----------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------S 286 (446)
Q Consensus 224 ~C~~C~G~G~~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-------~ 286 (446)
.|..|.|+|.+.... ...|..|+|+|..+... ..|+.|.|++++...+-.+. +
T Consensus 145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~k----------d~C~~C~G~~~v~~kkil~v~V~~g~~~ 214 (337)
T KOG0712|consen 145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLK----------DRCKTCSGAKVVREKKILEVHVEPGMPH 214 (337)
T ss_pred CCCCCCCCCceeEEEeccccccccceeEeccCCCcccccccc----------ccCcccccchhhhhhheeeccccCCCcc
Confidence 799999999864432 66899999999875533 78999999987654321111 0
Q ss_pred CceEE--------------------------------------------------------EEeeEEEEEeCCC--CCCC
Q 013277 287 GEGRI--------------------------------------------------------RLKKNIKVKVPPG--VSTG 308 (446)
Q Consensus 287 G~G~v--------------------------------------------------------~~~~~l~V~Ip~G--~~~G 308 (446)
+...+ .+.+.+++.++|| +.+|
T Consensus 215 ~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~ 294 (337)
T KOG0712|consen 215 GQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPG 294 (337)
T ss_pred cceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChh
Confidence 11110 3457899999999 9999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEecc
Q 013277 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIP 339 (446)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~ 339 (446)
+++++.|+|++..+.. .|||||.++|+.++
T Consensus 295 ~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 295 DTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK 324 (337)
T ss_pred HEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence 9999999999987655 99999999999887
No 98
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.4e-08 Score=91.99 Aligned_cols=63 Identities=30% Similarity=0.481 Sum_probs=57.4
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhh
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAM 137 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~ 137 (446)
.+.|+|++|.|.++.+.++||+.||+|+...|||+|++ +.|...|.-+..||..|-|+..|..
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 36799999999999999999999999999999999996 5688999999999999999886543
No 99
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.65 E-value=3.2e-08 Score=98.67 Aligned_cols=82 Identities=17% Similarity=0.321 Sum_probs=64.3
Q ss_pred cCCcceEEEEeecHHHHhCCCEEEE----eccC--C--------eEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEE
Q 013277 343 RDGIDLFSTISISYLDAIMGTVVKV----KTVE--G--------ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHL 408 (446)
Q Consensus 343 R~g~dL~~~~~Isl~eAl~G~~~~i----~~ld--G--------~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~ 408 (446)
++|.||++++.|+|.||+.|+..+| ++++ | .++|.||+|+++|++++++|+|+|..++ ..+||||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~ 193 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENG-GPNGDLW 193 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCC-CCCccEE
Confidence 4688999999999999999996554 4444 3 3578999999999999999999997543 4579999
Q ss_pred EEEEEEcCCC-CCcchHHH
Q 013277 409 FTVKVTIPNR-IRYVYSPS 426 (446)
Q Consensus 409 v~~~v~~P~~-ls~~~~~~ 426 (446)
|+|+|. |.. +..+...+
T Consensus 194 v~i~v~-ph~~f~r~g~DL 211 (306)
T PRK10266 194 LVIHIA-PHPLFDIVGQDL 211 (306)
T ss_pred EEEEEc-CCCCeEEeCCce
Confidence 999999 643 34333333
No 100
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.65 E-value=4.8e-08 Score=81.89 Aligned_cols=62 Identities=35% Similarity=0.719 Sum_probs=50.1
Q ss_pred cceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEE
Q 013277 220 SHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRL 293 (446)
Q Consensus 220 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~ 293 (446)
...+.|..|+|+|.. +|+.|+|+|.+.... .+++++...|+.|+|+|+. .|..|.|.|.+..
T Consensus 39 ~~~v~C~~C~GsG~~------~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~ 100 (111)
T PLN03165 39 ENTQPCFPCSGTGAQ------VCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR 100 (111)
T ss_pred ccCCCCCCCCCCCCc------CCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence 345789999999973 899999999987543 2345566899999999985 4999999998754
No 101
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4.6e-07 Score=74.07 Aligned_cols=66 Identities=26% Similarity=0.311 Sum_probs=56.9
Q ss_pred ccccccceecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchh
Q 013277 64 STYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132 (446)
Q Consensus 64 ~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 132 (446)
..++-++...+..+..-.||||+++++.+.||+|+|+.+...|||+. +....-.+||||+++|...
T Consensus 43 ~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~G---GSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 43 AFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRG---GSPYLASKINEAKDLLEGT 108 (112)
T ss_pred hhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCC---CCHHHHHHHHHHHHHHhcc
Confidence 44455677778888999999999999999999999999999999998 5557778999999999753
No 102
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.9e-07 Score=83.14 Aligned_cols=56 Identities=32% Similarity=0.622 Sum_probs=52.0
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHh-hcchh
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYE-VLSDD 132 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~-vL~d~ 132 (446)
..+|.+|||...|+.+|++.||..|++++|||...+....+.|.+|.+||. ||+..
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999888888899999999998 88754
No 103
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.2e-06 Score=95.71 Aligned_cols=55 Identities=36% Similarity=0.555 Sum_probs=47.2
Q ss_pred cCcCchhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcch
Q 013277 75 ASGDYYATLGVPKS----ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSD 131 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~----as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d 131 (446)
...+.|+||.|+-+ -..++||++|++||.+|||||| |+..+.|.++|+|||.|+.
T Consensus 1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--PEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--PEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHHHH
Confidence 34689999999753 2347899999999999999998 5778999999999999983
No 104
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.06 E-value=3.8e-06 Score=76.99 Aligned_cols=48 Identities=31% Similarity=0.662 Sum_probs=38.8
Q ss_pred ecCCCCCCcceEec--eeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEc
Q 013277 266 SVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (446)
Q Consensus 266 ~~C~~C~G~G~~~~--~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (446)
.+|+.|+|+|+++. ++|++|+|.|++..++++.+++ .|+.+|++|++.
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 46666666666665 5788888888888899999999 999999999874
No 105
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.86 E-value=1.1e-05 Score=61.79 Aligned_cols=44 Identities=32% Similarity=0.897 Sum_probs=31.8
Q ss_pred ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcc
Q 013277 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 275 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 275 (446)
....|+.|+|+|..... ...+|+.|+|+|+++ .. .+|+.|+|.|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~----------~~C~~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK----------DPCKTCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS----------SB-SSSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC----------CCCCCCCCcC
Confidence 45689999999997543 277899999999987 22 7999999986
No 106
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.76 E-value=3.3e-05 Score=83.41 Aligned_cols=70 Identities=56% Similarity=0.928 Sum_probs=66.3
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccce
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV 146 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~ 146 (446)
+|||++|||+++|+.++||+|||+|+++||||+++.+.+.++|++|++||++|+||.+|+.||.||..+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 5899999999999999999999999999999999887888999999999999999999999999987654
No 107
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.65 E-value=3.3e-05 Score=80.56 Aligned_cols=68 Identities=31% Similarity=0.736 Sum_probs=43.6
Q ss_pred eecccccCCccccCcceeeCCCCCCccEEEEeee--------CCceeeee-eecCCCCCCcceEe-ceeeeecCCceEE
Q 013277 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ--------TPFGLFSQ-VSVCPSCGGEGEVI-SEYCRKCSGEGRI 291 (446)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~--------~~~g~~~~-~~~C~~C~G~G~~~-~~~C~~C~G~G~v 291 (446)
..|+.|+|+|.... ....|+.|+|+|..-.... ...-+|.. ..+|+.|.|+|.+. ...|+.|.|.|.+
T Consensus 3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv 80 (715)
T COG1107 3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV 80 (715)
T ss_pred ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence 46888888887543 2557888888887621110 00011222 35888888888765 4788888888877
No 108
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.83 E-value=0.00097 Score=56.10 Aligned_cols=41 Identities=29% Similarity=0.808 Sum_probs=32.8
Q ss_pred ecccccCCccccCc------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec
Q 013277 224 TCEVCTGTGAKMGS------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (446)
Q Consensus 224 ~C~~C~G~G~~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 279 (446)
.|+.|+|+|..... ...+|+.|+|+|+. .|+.|.|+|.+.+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~~~ 100 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEEee
Confidence 79999999986321 26689999999963 4999999998754
No 109
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.002 Score=56.77 Aligned_cols=66 Identities=24% Similarity=0.450 Sum_probs=52.8
Q ss_pred cCcCchhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277 75 ASGDYYATLGVPK--SASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (446)
Q Consensus 75 ~~~d~Y~iLgv~~--~as~~eIk~ayr~l~~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 140 (446)
...+||.++|... ...++.++..|--..++.|||+... ..+.+.-.++++||.+|.||.+|+.|=.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4568999997653 4566777778999999999998432 2366778999999999999999999854
No 110
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.0023 Score=67.18 Aligned_cols=45 Identities=33% Similarity=0.920 Sum_probs=36.5
Q ss_pred eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec---------------------eeeeecCCceEEEE
Q 013277 239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS---------------------EYCRKCSGEGRIRL 293 (446)
Q Consensus 239 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~---------------------~~C~~C~G~G~v~~ 293 (446)
..+|+.|+|+|++.... ..|+.|+|+|+... -+|..|+|+|.++.
T Consensus 2 ~~~C~~C~g~G~i~v~~----------e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v 67 (715)
T COG1107 2 IKKCPECGGKGKIVVGE----------EECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV 67 (715)
T ss_pred CccccccCCCceEeeee----------eecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE
Confidence 35899999999986543 78999999998622 18999999999854
No 111
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.44 E-value=0.0021 Score=59.05 Aligned_cols=30 Identities=30% Similarity=0.784 Sum_probs=18.5
Q ss_pred eeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec
Q 013277 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (446)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 279 (446)
.+|+.|+|+|.+++.. .+|+.|+|+|++..
T Consensus 100 ~~C~~C~G~G~~i~~~----------~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQ----------RECDTCAGTGRFRP 129 (186)
T ss_pred CcCCCCCCeeEEecCC----------CCCCCCCCccEEee
Confidence 3566666666665422 46777777776654
No 112
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0033 Score=61.33 Aligned_cols=31 Identities=35% Similarity=0.761 Sum_probs=17.9
Q ss_pred cCCCCCCcceEeceeeeecCCceEEEEeeEEEEE
Q 013277 267 VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK 300 (446)
Q Consensus 267 ~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~ 300 (446)
.|++|.|+|. .+|.+|.|.|....-..+.|.
T Consensus 247 ~C~tC~grG~---k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 247 ECHTCKGRGK---KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cCCcccCCCC---cccccccCccceeeeEEEEEE
Confidence 3444444443 477788888776655444444
No 113
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0057 Score=56.00 Aligned_cols=53 Identities=42% Similarity=0.552 Sum_probs=45.6
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHhhc
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVL 129 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--------~~~~~~f~~i~~Ay~vL 129 (446)
.+.|.+|++...+...+|+++|+++...+|||+-.. ..+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999997532 23677888999998753
No 114
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.0071 Score=59.09 Aligned_cols=25 Identities=32% Similarity=0.852 Sum_probs=20.4
Q ss_pred eecCCCCCCcceEeceeeeecCCceEEE
Q 013277 265 VSVCPSCGGEGEVISEYCRKCSGEGRIR 292 (446)
Q Consensus 265 ~~~C~~C~G~G~~~~~~C~~C~G~G~v~ 292 (446)
...|..|+|+|+ ..|.+|.|.|.+.
T Consensus 234 ~~~C~~C~G~G~---~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 234 HDLCYMCHGRGI---KECHTCKGRGKKP 258 (406)
T ss_pred cchhhhccCCCc---ccCCcccCCCCcc
Confidence 368999999997 5799999998763
No 115
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.021 Score=52.29 Aligned_cols=62 Identities=32% Similarity=0.518 Sum_probs=47.6
Q ss_pred chhhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277 79 YYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (446)
Q Consensus 79 ~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~ 140 (446)
+...+|..+.+. .+.++..|+.+++.||||+....+ +.+.+..++.||.+|.||.+|+.|=.
T Consensus 3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 444555555443 366899999999999999976432 33568899999999999999998865
No 116
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.64 E-value=0.036 Score=58.19 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc
Q 013277 88 SASGKEIKAAYRKLARQYHPDVNKEP 113 (446)
Q Consensus 88 ~as~~eIk~ayr~l~~~~HPD~~~~~ 113 (446)
=.+.+++||||||..+..||||.+..
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~ 424 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQK 424 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCC
Confidence 45889999999999999999998764
No 117
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.58 E-value=0.075 Score=45.96 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=44.2
Q ss_pred ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhh
Q 013277 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135 (446)
Q Consensus 74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r 135 (446)
++-.....||||++.++.+||.+.|.+|-...+|++. +....=.+|..|.|.|..+.+.
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~~ 113 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELKE 113 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999999999999999999976 6777778999999999866543
No 118
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.14 Score=50.81 Aligned_cols=107 Identities=21% Similarity=0.428 Sum_probs=61.6
Q ss_pred eeEeeeeecccccccceeeeeccceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCC
Q 013277 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (446)
Q Consensus 198 i~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 272 (446)
+.+.+...++.. .|.. .........|..|.|+|.... ....+|..|+|.|.+.. ..|..|.
T Consensus 159 ~~~~~~~~~~t~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~ 224 (288)
T KOG0715|consen 159 ISFNVLSDCETC-FGSG-AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACS 224 (288)
T ss_pred eEEEeecccccc-cCcC-cccccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhh
Confidence 445554444433 3332 334456789999999993221 12337999999999876 4599999
Q ss_pred CcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCC
Q 013277 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAG 320 (446)
Q Consensus 273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~ 320 (446)
|.|.+...+-......+.+....+|++..+... --.+++.=..++.
T Consensus 225 g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~--~l~v~~~v~~~~~ 270 (288)
T KOG0715|consen 225 GAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND--DLFVRLIVAKSPS 270 (288)
T ss_pred cchhhhhheeEEeecCcccccccEEEEecCCcc--eEEEEEEeccCcc
Confidence 999665543333333444444445555444333 3334444444443
No 119
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.31 E-value=0.54 Score=45.56 Aligned_cols=52 Identities=33% Similarity=0.631 Sum_probs=37.1
Q ss_pred eeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecC
Q 013277 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS 286 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 286 (446)
...|..|.|.++ .+|..|+|+-+++..... .....+|..|+-.|.+. |+.|.
T Consensus 229 ~~~C~~CGg~rF------lpC~~C~GS~kv~~~~~~----~~~~~rC~~CNENGLvr---Cp~Cs 280 (281)
T KOG2824|consen 229 GGVCESCGGARF------LPCSNCHGSCKVHEEEED----DGGVLRCLECNENGLVR---CPVCS 280 (281)
T ss_pred CCcCCCcCCcce------EecCCCCCceeeeeeccC----CCcEEECcccCCCCcee---CCccC
Confidence 367999999875 479999999988763111 12237899999999874 55553
No 120
>PF13446 RPT: A repeated domain in UCH-protein
Probab=84.96 E-value=1.5 Score=32.69 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=32.9
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcch
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSD 131 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d 131 (446)
.+.|+.|||+++.+++.|-.+|+.... -.| .....+.+|..++.+
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P---------~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP---------SQKDTLREALRVIAE 49 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh---------HhHHHHHHHHHHHHH
Confidence 358999999999999999999998876 122 234445566666654
No 121
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=82.83 E-value=2.6 Score=39.22 Aligned_cols=40 Identities=35% Similarity=0.434 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchh
Q 013277 86 PKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132 (446)
Q Consensus 86 ~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 132 (446)
+++|+.|||++|+.++..+|--| .+.-.+|..|||.+.-.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHH
Confidence 57999999999999999988433 45667788999866533
No 122
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=81.62 E-value=1.5 Score=38.98 Aligned_cols=47 Identities=34% Similarity=0.671 Sum_probs=31.5
Q ss_pred eeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceE
Q 013277 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 277 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 277 (446)
...|..|.|.+. .+|..|+|+=+++.......+ ....|+.||-.|.+
T Consensus 99 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~~~~---~~~rC~~Cnengl~ 145 (147)
T cd03031 99 GGVCEGCGGARF------VPCSECNGSCKVFAENATAAG---GFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCCcCe------EECCCCCCcceEEeccCcccc---cEEECCCCCccccc
Confidence 356999998775 579999999888654311011 12678888877754
No 123
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=80.62 E-value=5.4 Score=30.86 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=34.4
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKE 121 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~ 121 (446)
|++|--+++|+++-|+++||+.|-++.+++..--..|+....+.|..
T Consensus 1 MCRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~ 47 (88)
T COG5552 1 MCRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEA 47 (88)
T ss_pred CccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHH
Confidence 45667788999999999999999999999864444433344455543
No 124
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.01 E-value=1.7 Score=42.23 Aligned_cols=38 Identities=32% Similarity=0.848 Sum_probs=31.0
Q ss_pred eeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec--------eeeeecCCceEEE
Q 013277 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--------EYCRKCSGEGRIR 292 (446)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--------~~C~~C~G~G~v~ 292 (446)
..|..|+|.+.+ +|..|+|.-++.. .+|..|+=.|.++
T Consensus 230 ~~C~~CGg~rFl---------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL---------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE---------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 479999999874 7999999998876 3899998776553
No 125
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=77.16 E-value=1.3 Score=51.32 Aligned_cols=61 Identities=30% Similarity=0.549 Sum_probs=37.8
Q ss_pred ccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcce---EeceeeeecCC
Q 013277 211 FGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE---VISEYCRKCSG 287 (446)
Q Consensus 211 ~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~---~~~~~C~~C~G 287 (446)
.++..++++. ...|+.|+.... ...|+.|+.+-.. ...|+.|+..=. .....|+.|..
T Consensus 657 ~~G~ieVEV~-~rkCPkCG~~t~-----~~fCP~CGs~te~-------------vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 657 EGGVIEVEVG-RRRCPSCGTETY-----ENRCPDCGTHTEP-------------VYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred cCCeEEEEEE-EEECCCCCCccc-----cccCcccCCcCCC-------------ceeCccCCCccCCCccccccCCCCCC
Confidence 3444445543 578999987543 2389999876421 147999988411 01347999965
Q ss_pred ceE
Q 013277 288 EGR 290 (446)
Q Consensus 288 ~G~ 290 (446)
.-.
T Consensus 718 plv 720 (1337)
T PRK14714 718 ELT 720 (1337)
T ss_pred ccc
Confidence 443
No 126
>PRK04023 DNA polymerase II large subunit; Validated
Probab=75.24 E-value=1.3 Score=50.16 Aligned_cols=65 Identities=28% Similarity=0.585 Sum_probs=41.6
Q ss_pred ecccccc-cceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeee
Q 013277 205 EFSESIF-GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR 283 (446)
Q Consensus 205 tlee~~~-G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~ 283 (446)
++.+|+. +...++.+. ...|+.|+-.+ ....|+.|+..-..+ ..|+.|.-... ...|+
T Consensus 609 ~i~~A~~~~g~~eVEVg-~RfCpsCG~~t-----~~frCP~CG~~Te~i-------------~fCP~CG~~~~--~y~CP 667 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIG-RRKCPSCGKET-----FYRRCPFCGTHTEPV-------------YRCPRCGIEVE--EDECE 667 (1121)
T ss_pred cHHHHHhcCCceeeccc-CccCCCCCCcC-----CcccCCCCCCCCCcc-------------eeCccccCcCC--CCcCC
Confidence 3556666 555555543 36799998764 346899998873221 57999954432 36799
Q ss_pred ecCCceE
Q 013277 284 KCSGEGR 290 (446)
Q Consensus 284 ~C~G~G~ 290 (446)
+|.-.-.
T Consensus 668 KCG~El~ 674 (1121)
T PRK04023 668 KCGREPT 674 (1121)
T ss_pred CCCCCCC
Confidence 9965443
No 127
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=75.05 E-value=12 Score=29.19 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=34.0
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKE 121 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~ 121 (446)
|++|--.+.|+.+-||++||..|-.+.++|.-=-..+.....+.|.+
T Consensus 1 MCRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 1 MCRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred CCcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 34455566789999999999999999999975554444444555554
No 128
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=74.38 E-value=16 Score=34.04 Aligned_cols=75 Identities=25% Similarity=0.535 Sum_probs=39.7
Q ss_pred eCCCCCCccEEE-Eeee-CC-cee-eeeeecCCCCCCcceEec------ee--eeecCCce-----EE------EEeeEE
Q 013277 241 ICSTCGGRGQVM-RTDQ-TP-FGL-FSQVSVCPSCGGEGEVIS------EY--CRKCSGEG-----RI------RLKKNI 297 (446)
Q Consensus 241 ~C~~C~G~G~~~-~~~~-~~-~g~-~~~~~~C~~C~G~G~~~~------~~--C~~C~G~G-----~v------~~~~~l 297 (446)
.|+.|++.|... .... +| |+- +.+...|+.|+=+-.-+. .+ -.++.... .+ ..--.+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~g~~~p~r~~l~V~~~~DL~r~VvkS~tati~IPEl 81 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEPKRYILKIDDEADLNRRVVKSESATIRIPEL 81 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccceeEECCCCCCEEEEEEECChhcccceEEEcCCcEEEccce
Confidence 477777777653 2223 32 332 234478999987643221 11 11111111 11 112357
Q ss_pred EEEeCCC-CCCCCEEEEcc
Q 013277 298 KVKVPPG-VSTGSILRVVG 315 (446)
Q Consensus 298 ~V~Ip~G-~~~G~~i~l~g 315 (446)
.+.|||| +..|..-.++|
T Consensus 82 ~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 82 GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred EEEECCCccCCceEEeeHh
Confidence 7888898 68888888865
No 129
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.77 E-value=2.1 Score=49.06 Aligned_cols=32 Identities=22% Similarity=0.595 Sum_probs=15.7
Q ss_pred eCCCCCCccEEEEeeeCCceeeee-eecCCCCCCcce
Q 013277 241 ICSTCGGRGQVMRTDQTPFGLFSQ-VSVCPSCGGEGE 276 (446)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~ 276 (446)
.|+.|.|.|.+... ++++.. ..+|+.|+|+.+
T Consensus 738 ~C~~C~G~G~~~~~----~~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 738 RCEACQGDGVIKIE----MHFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCccceEEEEE----ccCCCCcccCCCCcCCcee
Confidence 36666666665431 122222 245666666554
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=73.32 E-value=3 Score=37.06 Aligned_cols=35 Identities=31% Similarity=0.878 Sum_probs=26.8
Q ss_pred eeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec---------eeeeecCCce
Q 013277 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS---------EYCRKCSGEG 289 (446)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~---------~~C~~C~G~G 289 (446)
..|..|+|.+. .+|..|+|.-++.. ..|+.|+=.|
T Consensus 100 ~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cneng 143 (147)
T cd03031 100 GVCEGCGGARF---------------VPCSECNGSCKVFAENATAAGGFLRCPECNENG 143 (147)
T ss_pred CCCCCCCCcCe---------------EECCCCCCcceEEeccCcccccEEECCCCCccc
Confidence 46999999887 47999999988753 2677776544
No 131
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=72.89 E-value=18 Score=32.59 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=16.3
Q ss_pred eEEEEEeCCCCCCCCEEEEcc
Q 013277 295 KNIKVKVPPGVSTGSILRVVG 315 (446)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~g 315 (446)
-++.+.||||...|..-.++|
T Consensus 80 PEl~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 80 PELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeeEEecCCCCCcEEEehHH
Confidence 457788888888888877766
No 132
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=72.27 E-value=3.4 Score=41.66 Aligned_cols=52 Identities=37% Similarity=0.553 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC-----CcchHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277 89 ASGKEIKAAYRKLARQYHPDVNK-----EPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (446)
Q Consensus 89 as~~eIk~ayr~l~~~~HPD~~~-----~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 140 (446)
++..+|..+|+..+...||++.. .-...+.|++|.+||++|.+..+|..+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 56788999999999999999863 22456779999999999998665555554
No 133
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=71.79 E-value=1.3 Score=49.41 Aligned_cols=51 Identities=29% Similarity=0.641 Sum_probs=0.0
Q ss_pred eeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEE
Q 013277 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIR 292 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~ 292 (446)
...|+.|+-... ...|+.|+..-..+ -.|+.|+-.- ..+.|++|.......
T Consensus 655 ~r~Cp~Cg~~t~-----~~~Cp~CG~~T~~~-------------~~Cp~C~~~~--~~~~C~~C~~~~~~~ 705 (900)
T PF03833_consen 655 RRRCPKCGKETF-----YNRCPECGSHTEPV-------------YVCPDCGIEV--EEDECPKCGRETTSY 705 (900)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccCcccCCcch-----hhcCcccCCccccc-------------eecccccccc--CccccccccccCccc
Confidence 357999976543 56899998765432 4799998743 346999997665443
No 134
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=65.21 E-value=9.6 Score=27.50 Aligned_cols=37 Identities=32% Similarity=0.746 Sum_probs=18.2
Q ss_pred eeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceE
Q 013277 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 277 (446)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 277 (446)
..||-|+|....++......+... ...|..|+..|..
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~-~~~C~~Cga~~~~ 38 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSH-YFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEE-EEECCCCCCCccc
Confidence 468888887775542111111000 0267777766543
No 135
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=62.86 E-value=5.3 Score=46.06 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=17.6
Q ss_pred eCCCCCCccEEEEeeeCCceeeee-eecCCCCCCcceE
Q 013277 241 ICSTCGGRGQVMRTDQTPFGLFSQ-VSVCPSCGGEGEV 277 (446)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~ 277 (446)
.|+.|.|.|.+.... +++.. ..+|+.|+|+.+.
T Consensus 740 ~C~~C~G~G~~~~~~----~f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 740 RCEACQGDGVIKIEM----HFLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCcccccceEEEEe----ccCCCccccCccccCcccc
Confidence 377777777664321 22211 2567777666654
No 136
>PRK05978 hypothetical protein; Provisional
Probab=60.50 E-value=4.1 Score=36.23 Aligned_cols=25 Identities=36% Similarity=1.093 Sum_probs=13.6
Q ss_pred eCCCCCCccEEEEeeeCCceeeeeeecCCCCC
Q 013277 241 ICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (446)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 272 (446)
.||.| |+|+..+ |++.....|+.|+
T Consensus 35 rCP~C-G~G~LF~------g~Lkv~~~C~~CG 59 (148)
T PRK05978 35 RCPAC-GEGKLFR------AFLKPVDHCAACG 59 (148)
T ss_pred cCCCC-CCCcccc------cccccCCCccccC
Confidence 46666 4555543 3444445666665
No 137
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=59.84 E-value=8.2 Score=43.29 Aligned_cols=32 Identities=25% Similarity=0.639 Sum_probs=15.6
Q ss_pred eCCCCCCccEEEEeeeCCceeeeee-ecCCCCCCcce
Q 013277 241 ICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGE 276 (446)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~ 276 (446)
.|..|.|.|.+... +.++-.. .+|+.|+|+-+
T Consensus 732 RCe~C~GdG~ikIe----M~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 732 RCEACQGDGVIKIE----MHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred CCccccCCceEEEE----eccCCCceeeCCCcCCccc
Confidence 46666666654332 1122222 55666666554
No 138
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=59.19 E-value=7.1 Score=43.60 Aligned_cols=51 Identities=25% Similarity=0.584 Sum_probs=36.4
Q ss_pred ceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCc
Q 013277 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 288 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 288 (446)
....|..|+- ...|+.|...=..-+. ...-.|..|+-. ..+...|+.|.+.
T Consensus 434 ~~l~C~~Cg~--------v~~Cp~Cd~~lt~H~~--------~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 434 PLLLCRDCGY--------IAECPNCDSPLTLHKA--------TGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred ceeecccCCC--------cccCCCCCcceEEecC--------CCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 4688999975 5689999876332221 122689999888 5567889999765
No 139
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=58.85 E-value=10 Score=37.90 Aligned_cols=10 Identities=30% Similarity=0.730 Sum_probs=5.5
Q ss_pred eeecccccCC
Q 013277 222 LETCEVCTGT 231 (446)
Q Consensus 222 ~~~C~~C~G~ 231 (446)
...|+.|++.
T Consensus 187 ~~~CPvCGs~ 196 (309)
T PRK03564 187 RQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCc
Confidence 3456666554
No 140
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=58.13 E-value=6 Score=48.42 Aligned_cols=32 Identities=28% Similarity=0.575 Sum_probs=18.3
Q ss_pred eCCCCCCccEEEEeeeCCceeeeee-ecCCCCCCcce
Q 013277 241 ICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGE 276 (446)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~ 276 (446)
.|+.|.|.|.+... +.++-.. .+|+.|+|+.+
T Consensus 1609 rC~~C~G~G~i~i~----m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQWID----RAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEEEe----cccCCCcccCCCCCCCcCC
Confidence 37777777765332 2233222 56777777765
No 141
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=57.64 E-value=38 Score=30.56 Aligned_cols=26 Identities=19% Similarity=0.549 Sum_probs=18.6
Q ss_pred CEEEEeccCCeEEEEeCCCCCCCcEEEEcc
Q 013277 363 TVVKVKTVEGISELQVPPGTQPGDVLVLAK 392 (446)
Q Consensus 363 ~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g 392 (446)
.++.||-+ .+.||++++.|.+-.|.|
T Consensus 75 a~i~IPEl----~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 75 ATISIPEL----DLEIPPGPLGGFITTVEG 100 (160)
T ss_pred cEEEeeee----eEEecCCCCCcEEEehHH
Confidence 35556543 578888888888888866
No 142
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=56.89 E-value=31 Score=29.31 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=14.8
Q ss_pred cceeecccccCCccccCcceeeCCCCCCccE
Q 013277 220 SHLETCEVCTGTGAKMGSKMRICSTCGGRGQ 250 (446)
Q Consensus 220 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 250 (446)
.....|..|+-...........||.|++...
T Consensus 69 p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~ 99 (117)
T PRK00564 69 KVELECKDCSHVFKPNALDYGVCEKCHSKNV 99 (117)
T ss_pred CCEEEhhhCCCccccCCccCCcCcCCCCCce
Confidence 3445677776433322222223666655543
No 143
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=53.83 E-value=7.2 Score=32.78 Aligned_cols=26 Identities=23% Similarity=0.600 Sum_probs=16.8
Q ss_pred ceeecccccCCccccCcceeeCCCCC
Q 013277 221 HLETCEVCTGTGAKMGSKMRICSTCG 246 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~ 246 (446)
.+.+|+.|+-.-.--+..+.+||.|+
T Consensus 8 tKR~Cp~CG~kFYDLnk~PivCP~CG 33 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNKDPIVCPKCG 33 (108)
T ss_pred CcccCCCCcchhccCCCCCccCCCCC
Confidence 34567777766665555666677774
No 144
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=52.47 E-value=16 Score=29.69 Aligned_cols=34 Identities=9% Similarity=0.104 Sum_probs=28.9
Q ss_pred EEEEEEEEcCC-CCCcchHHHHHHHhhccchheee
Q 013277 407 HLFTVKVTIPN-RIRYVYSPSLTIIQLNSVIILLF 440 (446)
Q Consensus 407 L~v~~~v~~P~-~ls~~~~~~l~~l~~~~~~~~~~ 440 (446)
.+.-++|+.|. .||++|++.++.|...++....-
T Consensus 62 ~~~~iEvK~p~~~ls~~Q~~~~~~l~~~G~~v~V~ 96 (100)
T PF08774_consen 62 IFLFIEVKGPGDRLSPNQKEWIDKLREAGFRVAVC 96 (100)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHCCCEEEEE
Confidence 57778999995 69999999999999988876543
No 145
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.95 E-value=6.2 Score=45.39 Aligned_cols=29 Identities=28% Similarity=0.635 Sum_probs=23.4
Q ss_pred ecCCCCCCcceEec---------eeeeecCCceEEEEe
Q 013277 266 SVCPSCGGEGEVIS---------EYCRKCSGEGRIRLK 294 (446)
Q Consensus 266 ~~C~~C~G~G~~~~---------~~C~~C~G~G~v~~~ 294 (446)
-.|+.|.|.|.+.. ..|..|+|+....+.
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 774 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRET 774 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHH
Confidence 35999999999863 499999998876554
No 146
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=50.97 E-value=4.4 Score=33.22 Aligned_cols=37 Identities=27% Similarity=0.609 Sum_probs=18.6
Q ss_pred eCCCCCCccEEEEeeeCCce-eeeeeecCCCCCCcceE
Q 013277 241 ICSTCGGRGQVMRTDQTPFG-LFSQVSVCPSCGGEGEV 277 (446)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~g-~~~~~~~C~~C~G~G~~ 277 (446)
.|..|+|.|.++-..++... -+--...|..|.|.|+.
T Consensus 7 ~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCC
Confidence 45566666655432222111 11122578888887764
No 147
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=49.37 E-value=50 Score=29.89 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=14.7
Q ss_pred EEEEEeCCCC-CCCCEEEEcc
Q 013277 296 NIKVKVPPGV-STGSILRVVG 315 (446)
Q Consensus 296 ~l~V~Ip~G~-~~G~~i~l~g 315 (446)
++.+.||||. ..|..=.++|
T Consensus 78 El~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 78 ELGIKIEPGPASQGYISNIEG 98 (163)
T ss_pred ceeEEecCCCcCCceEEehHh
Confidence 4778888887 6777666755
No 148
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=49.36 E-value=11 Score=43.50 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=23.4
Q ss_pred cCCCCCCcceEec---------eeeeecCCceEEEEee
Q 013277 267 VCPSCGGEGEVIS---------EYCRKCSGEGRIRLKK 295 (446)
Q Consensus 267 ~C~~C~G~G~~~~---------~~C~~C~G~G~v~~~~ 295 (446)
.|+.|.|.|.+.. ..|+.|+|.....+..
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l 777 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETL 777 (943)
T ss_pred CCCcccccceEEEEeccCCCccccCccccCccccccce
Confidence 5999999999864 3899999988766543
No 149
>PRK14873 primosome assembly protein PriA; Provisional
Probab=49.24 E-value=15 Score=40.76 Aligned_cols=50 Identities=20% Similarity=0.487 Sum_probs=34.6
Q ss_pred ceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCc
Q 013277 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 288 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 288 (446)
....|..|+- ...|+.|++.=..-+.. ..-.|..|+-.- ....|+.|.+.
T Consensus 382 p~l~C~~Cg~--------~~~C~~C~~~L~~h~~~--------~~l~Ch~CG~~~--~p~~Cp~Cgs~ 431 (665)
T PRK14873 382 PSLACARCRT--------PARCRHCTGPLGLPSAG--------GTPRCRWCGRAA--PDWRCPRCGSD 431 (665)
T ss_pred CeeEhhhCcC--------eeECCCCCCceeEecCC--------CeeECCCCcCCC--cCccCCCCcCC
Confidence 4578999974 57899998764432211 125799998753 47899999655
No 150
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=48.31 E-value=9.2 Score=42.90 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=25.4
Q ss_pred eeccce-eecccccCCccccCcc------eeeCCCCCCccEE
Q 013277 217 FELSHL-ETCEVCTGTGAKMGSK------MRICSTCGGRGQV 251 (446)
Q Consensus 217 ~~~~~~-~~C~~C~G~G~~~~~~------~~~C~~C~G~G~~ 251 (446)
|.++-+ -.|+.|+|-|...... ..+|+.|+|+-..
T Consensus 724 FSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 724 FSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred ccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 444444 6799999999863322 6899999998764
No 151
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=47.21 E-value=31 Score=29.16 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCC-cc----hHHHHHHHHHHHhhcc
Q 013277 87 KSASGKEIKAAYRKLARQYHPDVNKE-PG----ATEKFKEISAAYEVLS 130 (446)
Q Consensus 87 ~~as~~eIk~ayr~l~~~~HPD~~~~-~~----~~~~f~~i~~Ay~vL~ 130 (446)
+..+..+++.|.|.+-++.|||...+ |. .++-++.++.-.+.|.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHh
Confidence 34577899999999999999997643 22 2344666665555444
No 152
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=46.87 E-value=11 Score=41.71 Aligned_cols=48 Identities=29% Similarity=0.637 Sum_probs=31.4
Q ss_pred eecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCC
Q 013277 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSG 287 (446)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G 287 (446)
..|+.|+.. .....+-|+.|+..-. ...|+.|+-.=..-.+.|..|..
T Consensus 2 ~~Cp~Cg~~---n~~~akFC~~CG~~l~--------------~~~Cp~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFE---NPNNNRFCQKCGTSLT--------------HKPCPQCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCc---CCCCCccccccCCCCC--------------CCcCCCCCCCCCcccccccccCC
Confidence 368888653 2223457999955431 14699998876666678999944
No 153
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=45.94 E-value=43 Score=28.25 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=13.0
Q ss_pred cceeecccccCCccccCcceeeCCCCCCcc
Q 013277 220 SHLETCEVCTGTGAKMGSKMRICSTCGGRG 249 (446)
Q Consensus 220 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G 249 (446)
.....|..|+........ ...||.|++..
T Consensus 68 p~~~~C~~Cg~~~~~~~~-~~~CP~Cgs~~ 96 (113)
T PRK12380 68 PAQAWCWDCSQVVEIHQH-DAQCPHCHGER 96 (113)
T ss_pred CcEEEcccCCCEEecCCc-CccCcCCCCCC
Confidence 344567766643332211 12355555443
No 154
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.33 E-value=15 Score=39.39 Aligned_cols=51 Identities=22% Similarity=0.505 Sum_probs=31.5
Q ss_pred ceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCc
Q 013277 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 288 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 288 (446)
....|..|+- ...|+.|.+.=..-+.. ..-.|..|+-+-. +...|+.|.+.
T Consensus 212 ~~~~C~~Cg~--------~~~C~~C~~~l~~h~~~--------~~l~Ch~Cg~~~~-~~~~Cp~C~s~ 262 (505)
T TIGR00595 212 KNLLCRSCGY--------ILCCPNCDVSLTYHKKE--------GKLRCHYCGYQEP-IPKTCPQCGSE 262 (505)
T ss_pred CeeEhhhCcC--------ccCCCCCCCceEEecCC--------CeEEcCCCcCcCC-CCCCCCCCCCC
Confidence 3568999975 46799998753322211 1256888874432 34688888654
No 155
>PF14353 CpXC: CpXC protein
Probab=44.08 E-value=13 Score=31.77 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=7.8
Q ss_pred ecCCCCCCcceE
Q 013277 266 SVCPSCGGEGEV 277 (446)
Q Consensus 266 ~~C~~C~G~G~~ 277 (446)
.+|+.|+....+
T Consensus 39 ~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 39 FTCPSCGHKFRL 50 (128)
T ss_pred EECCCCCCceec
Confidence 567777766653
No 156
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=41.66 E-value=34 Score=29.55 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=15.8
Q ss_pred eEEEEEeCCCCCCCCEEEEccC
Q 013277 295 KNIKVKVPPGVSTGSILRVVGE 316 (446)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~g~ 316 (446)
..+++.-+.+++.||.+.+.-+
T Consensus 42 ~~~~~~~~~~~~~GD~V~v~i~ 63 (135)
T PF04246_consen 42 ITFRAPNPIGAKVGDRVEVEIP 63 (135)
T ss_pred EEEEecCCCCCCCCCEEEEEec
Confidence 4566666778888888877543
No 157
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=40.70 E-value=15 Score=31.58 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=16.2
Q ss_pred eeecccccCCccccCcceeeCCCCCC
Q 013277 222 LETCEVCTGTGAKMGSKMRICSTCGG 247 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G 247 (446)
+..|+.|+-.-.-....+.+||.|+-
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~ 34 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGE 34 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCC
Confidence 45677776666555555666776643
No 158
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=40.65 E-value=26 Score=31.09 Aligned_cols=34 Identities=24% Similarity=0.701 Sum_probs=17.6
Q ss_pred CcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceE
Q 013277 236 GSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 277 (446)
Q Consensus 236 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 277 (446)
+.-.-.|..|+-.=...... ...+|+.|++..+.
T Consensus 109 g~G~l~C~~Cg~~~~~~~~~--------~l~~Cp~C~~~~F~ 142 (146)
T PF07295_consen 109 GPGTLVCENCGHEVELTHPE--------RLPPCPKCGHTEFT 142 (146)
T ss_pred cCceEecccCCCEEEecCCC--------cCCCCCCCCCCeee
Confidence 33355677775433222211 12468888777664
No 159
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=40.26 E-value=14 Score=35.38 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=5.6
Q ss_pred CCEEEEEEEE
Q 013277 405 GDHLFTVKVT 414 (446)
Q Consensus 405 GdL~v~~~v~ 414 (446)
.+|+|++++.
T Consensus 202 H~i~l~~Q~T 211 (238)
T PF07092_consen 202 HNIVLHMQGT 211 (238)
T ss_pred EEEEEEEEEE
Confidence 5666666443
No 160
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=39.29 E-value=17 Score=18.86 Aligned_cols=13 Identities=54% Similarity=0.871 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhcc
Q 013277 118 KFKEISAAYEVLS 130 (446)
Q Consensus 118 ~f~~i~~Ay~vL~ 130 (446)
.|.++..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4778888888764
No 161
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=38.20 E-value=1.3e+02 Score=28.19 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=7.9
Q ss_pred ecCCCCCCcceEe
Q 013277 266 SVCPSCGGEGEVI 278 (446)
Q Consensus 266 ~~C~~C~G~G~~~ 278 (446)
..|..|+...-+.
T Consensus 120 l~C~aCGa~~~v~ 132 (201)
T PRK12336 120 LRCDACGAHRPVK 132 (201)
T ss_pred EEcccCCCCcccc
Confidence 4666666666544
No 162
>PRK14051 negative regulator GrlR; Provisional
Probab=37.91 E-value=1e+02 Score=25.74 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=40.9
Q ss_pred ccEEEEEEEEeccCcccCCcceEEEEeec--HHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEccCCCCC
Q 013277 327 GDLYVYLDVEEIPGIQRDGIDLFSTISIS--YLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPK 397 (446)
Q Consensus 327 GDL~v~i~v~~~~~f~R~g~dL~~~~~Is--l~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g~G~P~ 397 (446)
-||++.+.-..|+.-+--+-+--+.+.|+ +.+.-.|+++. -+..|..+|.|....+==..+.|++-|||.
T Consensus 48 ~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~-~HV~~Nekl~vdv~akFI~~LvI~~~~~~~ 119 (123)
T PRK14051 48 EDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLH-CHVRGNEKLFVDVYAKFIEPLVIKNTGMPQ 119 (123)
T ss_pred ceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEE-EEEcCCcEEEEEEeeeeeeeeEEccCCCcc
Confidence 56677776665554443333333556666 44444444433 255666566666555545578899999995
No 163
>PRK05580 primosome assembly protein PriA; Validated
Probab=37.45 E-value=22 Score=39.63 Aligned_cols=50 Identities=22% Similarity=0.535 Sum_probs=30.7
Q ss_pred eeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCc
Q 013277 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 288 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 288 (446)
...|..|+- ...|+.|.+.=...+. ...-.|..|+-+- .....|+.|.+.
T Consensus 381 ~~~C~~Cg~--------~~~C~~C~~~l~~h~~--------~~~l~Ch~Cg~~~-~~~~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCGW--------VAECPHCDASLTLHRF--------QRRLRCHHCGYQE-PIPKACPECGST 430 (679)
T ss_pred ceEhhhCcC--------ccCCCCCCCceeEECC--------CCeEECCCCcCCC-CCCCCCCCCcCC
Confidence 578888875 4579999874222111 1124688887553 344678888654
No 164
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.42 E-value=62 Score=27.78 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=40.3
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhh
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~ 134 (446)
...-+||+|+...+.+||.+.|..|-....+.+. +....=.+|..|-|-|-...+
T Consensus 59 qEa~qILnV~~~ln~eei~k~yehLFevNdkskG---GSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 59 QEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKG---GSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred HHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccC---cceeehHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999887776665 344444456666666654444
No 165
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=35.48 E-value=93 Score=26.27 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=4.7
Q ss_pred eeeccccc
Q 013277 222 LETCEVCT 229 (446)
Q Consensus 222 ~~~C~~C~ 229 (446)
...|..|+
T Consensus 70 ~~~C~~Cg 77 (115)
T TIGR00100 70 ECECEDCS 77 (115)
T ss_pred EEEcccCC
Confidence 34566665
No 166
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=35.27 E-value=26 Score=23.69 Aligned_cols=8 Identities=88% Similarity=2.075 Sum_probs=5.2
Q ss_pred ecCCCCCC
Q 013277 266 SVCPSCGG 273 (446)
Q Consensus 266 ~~C~~C~G 273 (446)
..|+.|+|
T Consensus 20 d~C~~C~G 27 (41)
T PF13453_consen 20 DVCPSCGG 27 (41)
T ss_pred EECCCCCe
Confidence 55777666
No 167
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=35.08 E-value=26 Score=23.24 Aligned_cols=7 Identities=57% Similarity=1.630 Sum_probs=3.6
Q ss_pred ecCCCCC
Q 013277 266 SVCPSCG 272 (446)
Q Consensus 266 ~~C~~C~ 272 (446)
..|+.|+
T Consensus 26 vrC~~C~ 32 (37)
T PF13719_consen 26 VRCPKCG 32 (37)
T ss_pred EECCCCC
Confidence 4455554
No 168
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=34.84 E-value=32 Score=22.41 Aligned_cols=12 Identities=58% Similarity=1.317 Sum_probs=7.1
Q ss_pred eeCCCCCCccEE
Q 013277 240 RICSTCGGRGQV 251 (446)
Q Consensus 240 ~~C~~C~G~G~~ 251 (446)
..|..|++.|.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 456666666654
No 169
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=34.55 E-value=83 Score=26.54 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=12.3
Q ss_pred ceeecccccCCccccCcceeeCCCCCCcc
Q 013277 221 HLETCEVCTGTGAKMGSKMRICSTCGGRG 249 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G 249 (446)
....|..|+-.-.........||.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 69 AECWCETCQQYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred cEEEcccCCCeeecCCccCCcCcCcCCCC
Confidence 34556666533222111123355555443
No 170
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=33.87 E-value=23 Score=33.96 Aligned_cols=14 Identities=43% Similarity=1.004 Sum_probs=8.9
Q ss_pred eeCCCCCCccEEEE
Q 013277 240 RICSTCGGRGQVMR 253 (446)
Q Consensus 240 ~~C~~C~G~G~~~~ 253 (446)
.+||+|+|+|++-+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 46777777776543
No 171
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=32.03 E-value=65 Score=27.09 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=12.2
Q ss_pred ceeecccccCCccccCcceeeCCCCCCcc
Q 013277 221 HLETCEVCTGTGAKMGSKMRICSTCGGRG 249 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G 249 (446)
....|..|+......... ..||.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~-~~CP~Cgs~~ 96 (113)
T PF01155_consen 69 ARARCRDCGHEFEPDEFD-FSCPRCGSPD 96 (113)
T ss_dssp -EEEETTTS-EEECHHCC-HH-SSSSSS-
T ss_pred CcEECCCCCCEEecCCCC-CCCcCCcCCC
Confidence 445677776554432221 3466665554
No 172
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.06 E-value=45 Score=34.57 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=56.7
Q ss_pred cEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEE--EccCCCCCCCCCCCCC
Q 013277 328 DLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLV--LAKKGAPKLNKPSIRG 405 (446)
Q Consensus 328 DL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~--l~g~G~P~~~~~~~~G 405 (446)
-+|+++++++++.|.-.+--+++...=.+.|-=.|.-.-=++.++..+|-|+..++-|.++. |-.+|||-... +..+
T Consensus 370 pkve~~ev~edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~~k~qlLvradtnlGnilLN~Ll~kgMkctr~-gknn 448 (487)
T KOG2724|consen 370 PKVETVEVQEDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDRGKFQLLVRADTNLGNILLNSLLNKGMKCTRV-GKNN 448 (487)
T ss_pred CeeEeecccCccchhccccceEEEecccccccccceeecccccccceeeeehhccchhHHHHHHhhcCCCcceec-cCCc
Confidence 35777777777777777766777666666665444333333444777888999898888764 77999997543 4567
Q ss_pred CEEEEEE
Q 013277 406 DHLFTVK 412 (446)
Q Consensus 406 dL~v~~~ 412 (446)
+|||.+-
T Consensus 449 vlIvcvp 455 (487)
T KOG2724|consen 449 VLIVCVP 455 (487)
T ss_pred eEEEEeC
Confidence 7776554
No 173
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=30.95 E-value=55 Score=20.33 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhCC
Q 013277 91 GKEIKAAYRKLARQYHP 107 (446)
Q Consensus 91 ~~eIk~ayr~l~~~~HP 107 (446)
.++.|.+-|+.|+.||.
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47889999999999994
No 174
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=30.80 E-value=71 Score=23.37 Aligned_cols=13 Identities=23% Similarity=0.874 Sum_probs=7.3
Q ss_pred eeeCCCCCCccEE
Q 013277 239 MRICSTCGGRGQV 251 (446)
Q Consensus 239 ~~~C~~C~G~G~~ 251 (446)
...||.|++.-++
T Consensus 4 Wi~CP~CgnKTR~ 16 (55)
T PF14205_consen 4 WILCPICGNKTRL 16 (55)
T ss_pred EEECCCCCCccce
Confidence 3456666665543
No 175
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=29.91 E-value=51 Score=29.68 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=13.8
Q ss_pred CEEEEeccCCeEEEEe-CCCCCCCcEEEEcc
Q 013277 363 TVVKVKTVEGISELQV-PPGTQPGDVLVLAK 392 (446)
Q Consensus 363 ~~~~i~~ldG~~~l~i-~~~~~~g~~~~l~g 392 (446)
.++.||-++ +.| |.+++.|.+-.|.|
T Consensus 76 ati~IPEl~----~ei~P~~~~~g~iTTVEG 102 (161)
T PF03367_consen 76 ATIEIPELG----LEIEPGPSQGGFITTVEG 102 (161)
T ss_dssp -EEEEGGGT----EEE--TTTT-SEEEEHHH
T ss_pred EEEEEeecc----eEEccCCCCCceEEehHH
Confidence 355565542 566 55567776666655
No 176
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.16 E-value=16 Score=31.16 Aligned_cols=11 Identities=36% Similarity=1.189 Sum_probs=5.9
Q ss_pred eCCCCCCccEEE
Q 013277 241 ICSTCGGRGQVM 252 (446)
Q Consensus 241 ~C~~C~G~G~~~ 252 (446)
.||.| |.|+..
T Consensus 23 rCP~C-GeGrLF 33 (126)
T COG5349 23 RCPRC-GEGRLF 33 (126)
T ss_pred CCCCC-CCchhh
Confidence 46666 455543
No 177
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=28.98 E-value=20 Score=44.15 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=22.8
Q ss_pred ecCCCCCCcceEece---------eeeecCCceEEEEe
Q 013277 266 SVCPSCGGEGEVISE---------YCRKCSGEGRIRLK 294 (446)
Q Consensus 266 ~~C~~C~G~G~~~~~---------~C~~C~G~G~v~~~ 294 (446)
-.|+.|.|.|.+.-+ .|..|+|+....+.
T Consensus 1608 GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~ 1645 (1809)
T PRK00635 1608 GQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLA 1645 (1809)
T ss_pred CCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHH
Confidence 359999999987542 89999998876544
No 178
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=28.91 E-value=47 Score=28.15 Aligned_cols=18 Identities=50% Similarity=1.110 Sum_probs=7.9
Q ss_pred CCCCCCcceEeceeeeec
Q 013277 268 CPSCGGEGEVISEYCRKC 285 (446)
Q Consensus 268 C~~C~G~G~~~~~~C~~C 285 (446)
||.|++.=.+..-.|..|
T Consensus 1 CPvCg~~l~vt~l~C~~C 18 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSC 18 (113)
T ss_pred CCCCCCceEEEEEEcCCC
Confidence 344444434444445555
No 179
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=28.35 E-value=90 Score=21.08 Aligned_cols=32 Identities=31% Similarity=0.593 Sum_probs=15.2
Q ss_pred eCCCCCCccEEEEeeeC--CceeeeeeecCCCCC
Q 013277 241 ICSTCGGRGQVMRTDQT--PFGLFSQVSVCPSCG 272 (446)
Q Consensus 241 ~C~~C~G~G~~~~~~~~--~~g~~~~~~~C~~C~ 272 (446)
.|+.|+....+....|+ .-..+...-.|..|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 47777766655433222 111223334566654
No 180
>PRK11032 hypothetical protein; Provisional
Probab=27.99 E-value=57 Score=29.43 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhCC
Q 013277 93 EIKAAYRKLARQYHP 107 (446)
Q Consensus 93 eIk~ayr~l~~~~HP 107 (446)
.++++|.++....+-
T Consensus 3 k~~~~Y~~ll~~v~~ 17 (160)
T PRK11032 3 KVAQYYRELVASLTE 17 (160)
T ss_pred hHHHHHHHHHHHHHH
Confidence 456777777754433
No 181
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=27.80 E-value=59 Score=31.59 Aligned_cols=32 Identities=16% Similarity=0.356 Sum_probs=26.3
Q ss_pred EEEeecHHHHhCC-CEEEEeccCCeE-EEEeCCC
Q 013277 350 STISISYLDAIMG-TVVKVKTVEGIS-ELQVPPG 381 (446)
Q Consensus 350 ~~~~Isl~eAl~G-~~~~i~~ldG~~-~l~i~~~ 381 (446)
|+..|-|+||+.| +..+|++.|+.+ .|.|.+.
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd 51 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD 51 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCC
Confidence 3568999999999 689999999986 5777654
No 182
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=27.61 E-value=79 Score=21.23 Aligned_cols=32 Identities=31% Similarity=0.545 Sum_probs=14.2
Q ss_pred eCCCCCCccEEEEeeeC--CceeeeeeecCCCCC
Q 013277 241 ICSTCGGRGQVMRTDQT--PFGLFSQVSVCPSCG 272 (446)
Q Consensus 241 ~C~~C~G~G~~~~~~~~--~~g~~~~~~~C~~C~ 272 (446)
.|+.|+....+....|+ .-..+...-.|..|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 47777777766554332 222233334565554
No 183
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=27.52 E-value=1.4e+02 Score=24.59 Aligned_cols=52 Identities=27% Similarity=0.572 Sum_probs=33.8
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhh-hccc
Q 013277 84 GVPKSASG-KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYD-QYGE 143 (446)
Q Consensus 84 gv~~~as~-~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd-~~g~ 143 (446)
|++++... .++-+.++.+...+++ ...+.+..+.+.| +.||.-+..|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~------~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG------GDPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 66666543 5566777777777766 2356788888888 68888888888 6654
No 184
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=27.06 E-value=63 Score=24.09 Aligned_cols=23 Identities=4% Similarity=0.127 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCcchHHHHHHHhh
Q 013277 410 TVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 410 ~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
..++.||.+||++|+..+..+-.
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~ 39 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLAS 39 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999987653
No 185
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=27.05 E-value=1.5e+02 Score=20.60 Aligned_cols=47 Identities=15% Similarity=0.456 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHH--HHHhhc--chhhhhhhhhhc
Q 013277 93 EIKAAYRKLARQYHPDVNKEPGATEKFKEIS--AAYEVL--SDDKKRAMYDQY 141 (446)
Q Consensus 93 eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~--~Ay~vL--~d~~~r~~yd~~ 141 (446)
+.+.+|++|...+. .++...-.+.-..|. ..|..| ++..++.+|+.|
T Consensus 1 ~a~~~F~~lL~e~~--i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHK--ITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTT--S-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC--CCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 46889998877755 443322222222221 145555 555566666543
No 186
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=26.67 E-value=1.5e+02 Score=22.28 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277 96 AAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (446)
Q Consensus 96 ~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 140 (446)
+.+|...++-||+. ...+..+.|.+.|..|++.++...+|.
T Consensus 14 ~~~r~~~~~~~p~~----~~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLK----ENRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44566667778885 356778889999999999988766555
No 187
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=25.85 E-value=3.1e+02 Score=25.58 Aligned_cols=34 Identities=21% Similarity=0.484 Sum_probs=22.2
Q ss_pred ccceeecccccCCccccCc----ceeeCCCCCCccEEE
Q 013277 219 LSHLETCEVCTGTGAKMGS----KMRICSTCGGRGQVM 252 (446)
Q Consensus 219 ~~~~~~C~~C~G~G~~~~~----~~~~C~~C~G~G~~~ 252 (446)
+...+.|+.|+-.-..... ....|..|+.++.+-
T Consensus 95 i~~yV~C~~C~~pdT~l~k~~~~~~l~C~aCGa~~~v~ 132 (201)
T PRK12336 95 VDEYVICSECGLPDTRLVKEDRVLMLRCDACGAHRPVK 132 (201)
T ss_pred HHheEECCCCCCCCcEEEEcCCeEEEEcccCCCCcccc
Confidence 3567889999765543221 145788888877664
No 188
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.18 E-value=59 Score=32.50 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=10.6
Q ss_pred cCCCCCCcceEeceeeeecCC
Q 013277 267 VCPSCGGEGEVISEYCRKCSG 287 (446)
Q Consensus 267 ~C~~C~G~G~~~~~~C~~C~G 287 (446)
.|.-|.-.=.....+|+.|..
T Consensus 212 ~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 212 SCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred EcCCCCCcccccCccCCCCCC
Confidence 455555444444555555543
No 189
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=24.46 E-value=79 Score=23.05 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=18.2
Q ss_pred CCCCEEEEEEEEcCCC--CCcchHHH
Q 013277 403 IRGDHLFTVKVTIPNR--IRYVYSPS 426 (446)
Q Consensus 403 ~~GdL~v~~~v~~P~~--ls~~~~~~ 426 (446)
..||+.|-|+|.+|+- ||.++-+.
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea 51 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEA 51 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHH
Confidence 3599999999999996 45554443
No 190
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=24.35 E-value=58 Score=23.98 Aligned_cols=9 Identities=56% Similarity=1.748 Sum_probs=5.0
Q ss_pred ecCCCCCCc
Q 013277 266 SVCPSCGGE 274 (446)
Q Consensus 266 ~~C~~C~G~ 274 (446)
..|+.|++.
T Consensus 18 ~~CP~CG~~ 26 (56)
T PRK13130 18 EICPVCGGK 26 (56)
T ss_pred ccCcCCCCC
Confidence 456666554
No 191
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=24.30 E-value=1.4e+02 Score=30.78 Aligned_cols=134 Identities=18% Similarity=0.162 Sum_probs=75.5
Q ss_pred EEEeCCCCCCCC------------EEEEccCCCCCCC----CCCCccEEEEEEEEe-cc----CcccCCcceEEEEeecH
Q 013277 298 KVKVPPGVSTGS------------ILRVVGEGDAGPR----GGPPGDLYVYLDVEE-IP----GIQRDGIDLFSTISISY 356 (446)
Q Consensus 298 ~V~Ip~G~~~G~------------~i~l~g~G~~~~~----g~~~GDL~v~i~v~~-~~----~f~R~g~dL~~~~~Isl 356 (446)
.-.|++|+++|. ...+.|.|.-..- ...+||+.++-+... .. ..-|+...+..+-.=.|
T Consensus 48 ~~~i~pGi~pGSd~ahLsl~GYDP~~yy~GRGplEAlG~Gv~l~~gDvAfR~NfaTvd~~~~vivDRRAGRi~~ee~~~l 127 (408)
T COG3635 48 MDPIKPGIRPGSDTAHLSLFGYDPYKYYTGRGPLEALGAGVELKPGDVAFRANFATVDEDGGVVVDRRAGRISTEEAEEL 127 (408)
T ss_pred ccccCCCCCCCCCcceeeeeccCcceeecCCChHHHhcCCccccCCCEEEEeeeeEecCCCcEEEeccCCCCChhhHHHH
Confidence 346788888883 3445566532110 135899999988765 22 22344445544444566
Q ss_pred HHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCc-----chHHHHHHHh
Q 013277 357 LDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRY-----VYSPSLTIIQ 431 (446)
Q Consensus 357 ~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~-----~~~~~l~~l~ 431 (446)
.++|.+..+++. +++.+-+++..--+++++|.|....-+. .--+.+.-.+...+.+.+ +..+++.++.
T Consensus 128 ~~~l~~~~~e~~-----v~~~f~~g~~hR~vlV~rg~~~~d~Vsd--~DPh~~g~~~~~~~~~~~s~~a~~tAeilne~~ 200 (408)
T COG3635 128 ADALNEEEVEIG-----VKVRFKAGVEHRAVLVLRGPGLSDKVSD--TDPHDEGKPPKLIKPLDPSGEAKKTAEILNEFV 200 (408)
T ss_pred HHHHhhhhcccc-----eEEEEEeccceEEEEEEecCCCcccccc--CChhhcCCCccccccCCCchHHHHHHHHHHHHH
Confidence 777765444442 5667777887788999999999732111 111222233323333332 4456666666
Q ss_pred hccchhe
Q 013277 432 LNSVIIL 438 (446)
Q Consensus 432 ~~~~~~~ 438 (446)
....||+
T Consensus 201 ~~~~eiL 207 (408)
T COG3635 201 LKAYEIL 207 (408)
T ss_pred HHHHHHH
Confidence 6666554
No 192
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=23.36 E-value=51 Score=24.42 Aligned_cols=10 Identities=50% Similarity=1.428 Sum_probs=5.2
Q ss_pred ecCCCCCCcc
Q 013277 266 SVCPSCGGEG 275 (446)
Q Consensus 266 ~~C~~C~G~G 275 (446)
..|+.|+|.-
T Consensus 18 e~Cp~CG~~t 27 (59)
T COG2260 18 EKCPVCGGDT 27 (59)
T ss_pred ccCCCCCCcc
Confidence 4555555543
No 193
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=23.11 E-value=47 Score=30.13 Aligned_cols=26 Identities=35% Similarity=0.751 Sum_probs=13.1
Q ss_pred eecccccCCccccCcceeeCCCCCCccEEE
Q 013277 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252 (446)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 252 (446)
..|..|.+.-.+ ..+||.|+..|..+
T Consensus 163 ilCtvCe~r~w~----g~~CPKCGr~G~pi 188 (200)
T PF12387_consen 163 ILCTVCEGREWK----GGNCPKCGRHGKPI 188 (200)
T ss_pred EEEeeeecCccC----CCCCCcccCCCCCe
Confidence 455556554332 22466666665543
No 194
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=23.04 E-value=34 Score=33.79 Aligned_cols=10 Identities=40% Similarity=1.072 Sum_probs=3.4
Q ss_pred ecCCCCCCcc
Q 013277 266 SVCPSCGGEG 275 (446)
Q Consensus 266 ~~C~~C~G~G 275 (446)
..|+.|+-..
T Consensus 212 ~~Cp~Cg~~~ 221 (290)
T PF04216_consen 212 IKCPYCGNTD 221 (290)
T ss_dssp TS-TTT---S
T ss_pred CCCcCCCCCC
Confidence 4566666553
No 195
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=22.98 E-value=4.2e+02 Score=21.65 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=23.0
Q ss_pred EEEEEEEeccCcccCCcceEEEEeecHHHHhCCC
Q 013277 330 YVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGT 363 (446)
Q Consensus 330 ~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~ 363 (446)
.+.|.|...+.+ ++|++....+++.+...|.
T Consensus 65 ~l~v~v~d~d~~---~~~~iG~~~~~l~~l~~g~ 95 (119)
T cd04036 65 VLELTVMDEDYV---MDDHLGTVLFDVSKLKLGE 95 (119)
T ss_pred EEEEEEEECCCC---CCcccEEEEEEHHHCCCCC
Confidence 466777776655 6789999999998866553
No 196
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=22.97 E-value=88 Score=28.03 Aligned_cols=34 Identities=24% Similarity=0.506 Sum_probs=15.8
Q ss_pred eCCCCCCcc-EEEEeeeCCceeee-eeecCCCCCCc
Q 013277 241 ICSTCGGRG-QVMRTDQTPFGLFS-QVSVCPSCGGE 274 (446)
Q Consensus 241 ~C~~C~G~G-~~~~~~~~~~g~~~-~~~~C~~C~G~ 274 (446)
.||.|+..- .++...-+..|... ....|+.|+.+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~ 37 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKR 37 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCc
Confidence 477777655 34333333333221 12456655544
No 197
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=22.96 E-value=61 Score=22.43 Aligned_cols=8 Identities=50% Similarity=1.178 Sum_probs=4.2
Q ss_pred ecCCCCCC
Q 013277 266 SVCPSCGG 273 (446)
Q Consensus 266 ~~C~~C~G 273 (446)
..|+.|+.
T Consensus 22 ~~Cp~CG~ 29 (46)
T PRK00398 22 VRCPYCGY 29 (46)
T ss_pred eECCCCCC
Confidence 45555543
No 198
>PRK05580 primosome assembly protein PriA; Validated
Probab=22.63 E-value=52 Score=36.70 Aligned_cols=43 Identities=21% Similarity=0.563 Sum_probs=27.7
Q ss_pred cceeecccccCCccc-cCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcc
Q 013277 220 SHLETCEVCTGTGAK-MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 275 (446)
Q Consensus 220 ~~~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 275 (446)
.....|+.|++.=.- .......|+.|+-+-.. ...|+.|++.-
T Consensus 388 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~-------------~~~Cp~Cg~~~ 431 (679)
T PRK05580 388 GWVAECPHCDASLTLHRFQRRLRCHHCGYQEPI-------------PKACPECGSTD 431 (679)
T ss_pred cCccCCCCCCCceeEECCCCeEECCCCcCCCCC-------------CCCCCCCcCCe
Confidence 455689999974221 12345689999754322 15899998873
No 199
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=22.44 E-value=48 Score=22.64 Aligned_cols=11 Identities=36% Similarity=1.144 Sum_probs=4.4
Q ss_pred eCCCCCCccEE
Q 013277 241 ICSTCGGRGQV 251 (446)
Q Consensus 241 ~C~~C~G~G~~ 251 (446)
+||.|+|+...
T Consensus 5 pCP~CGG~DrF 15 (40)
T PF08273_consen 5 PCPICGGKDRF 15 (40)
T ss_dssp --TTTT-TTTE
T ss_pred CCCCCcCcccc
Confidence 46666665543
No 200
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.40 E-value=2.4e+02 Score=24.16 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=6.2
Q ss_pred cceeecccccCC
Q 013277 220 SHLETCEVCTGT 231 (446)
Q Consensus 220 ~~~~~C~~C~G~ 231 (446)
.....| .|+-.
T Consensus 68 p~~~~C-~Cg~~ 78 (124)
T PRK00762 68 PVEIEC-ECGYE 78 (124)
T ss_pred CeeEEe-eCcCc
Confidence 344567 77644
No 201
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=22.32 E-value=60 Score=21.44 Aligned_cols=9 Identities=33% Similarity=0.766 Sum_probs=4.2
Q ss_pred eecccccCC
Q 013277 223 ETCEVCTGT 231 (446)
Q Consensus 223 ~~C~~C~G~ 231 (446)
..|+.|+..
T Consensus 3 i~Cp~C~~~ 11 (36)
T PF13717_consen 3 ITCPNCQAK 11 (36)
T ss_pred EECCCCCCE
Confidence 345555443
No 202
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=22.32 E-value=66 Score=21.92 Aligned_cols=9 Identities=33% Similarity=1.136 Sum_probs=5.1
Q ss_pred eCCCCCCcc
Q 013277 241 ICSTCGGRG 249 (446)
Q Consensus 241 ~C~~C~G~G 249 (446)
+||.|+.+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 466666544
No 203
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.22 E-value=52 Score=38.85 Aligned_cols=34 Identities=32% Similarity=0.804 Sum_probs=24.6
Q ss_pred eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCC
Q 013277 239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSG 287 (446)
Q Consensus 239 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G 287 (446)
...|+.|+..... ..|+.|+..-.. .-.|+.|..
T Consensus 667 ~rkCPkCG~~t~~--------------~fCP~CGs~te~-vy~CPsCGa 700 (1337)
T PRK14714 667 RRRCPSCGTETYE--------------NRCPDCGTHTEP-VYVCPDCGA 700 (1337)
T ss_pred EEECCCCCCcccc--------------ccCcccCCcCCC-ceeCccCCC
Confidence 6789999765321 479999988643 348999965
No 204
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=22.20 E-value=1.1e+02 Score=23.66 Aligned_cols=41 Identities=27% Similarity=0.677 Sum_probs=16.0
Q ss_pred ecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEe
Q 013277 224 TCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI 278 (446)
Q Consensus 224 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 278 (446)
.||.|+.. .........|..|+.. |.....|+.|+-.=.+.
T Consensus 3 ~CP~C~~~-L~~~~~~~~C~~C~~~-------------~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 3 TCPKCQQE-LEWQGGHYHCEACQKD-------------YKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp B-SSS-SB-EEEETTEEEETTT--E-------------EEEEEE-TTT-SB-EEE
T ss_pred cCCCCCCc-cEEeCCEEECcccccc-------------ceecccCCCcccHHHHH
Confidence 46666544 2111124456666542 22225677776655443
No 205
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=21.94 E-value=2.3e+02 Score=20.23 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277 95 KAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (446)
Q Consensus 95 k~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 140 (446)
.+.++...+.-|||. ...+..+.+.+.|..|++.++...+|.
T Consensus 12 ~~~~~~~~~~~~~~~----~~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGL----SVGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455666677788884 356778889999999999877665554
No 206
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.33 E-value=62 Score=27.41 Aligned_cols=21 Identities=57% Similarity=1.216 Sum_probs=16.0
Q ss_pred CCCCCCccEEEEeeeCCceeeeeeecCCCCCCc
Q 013277 242 CSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (446)
Q Consensus 242 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 274 (446)
||.|++.=.+.+ -.|+.|+-.
T Consensus 1 CPvCg~~l~vt~------------l~C~~C~t~ 21 (113)
T PF09862_consen 1 CPVCGGELVVTR------------LKCPSCGTE 21 (113)
T ss_pred CCCCCCceEEEE------------EEcCCCCCE
Confidence 999987766554 679999754
No 207
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=21.15 E-value=1.3e+02 Score=22.83 Aligned_cols=7 Identities=43% Similarity=1.360 Sum_probs=3.6
Q ss_pred ecCCCCC
Q 013277 266 SVCPSCG 272 (446)
Q Consensus 266 ~~C~~C~ 272 (446)
..|+.|+
T Consensus 37 v~C~~CG 43 (64)
T PF09855_consen 37 VSCTNCG 43 (64)
T ss_pred EECCCCC
Confidence 3455554
No 208
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=20.88 E-value=3.1e+02 Score=24.20 Aligned_cols=28 Identities=36% Similarity=0.720 Sum_probs=21.0
Q ss_pred cCCeEEEEeCCCC--------CCCcEEEEccCCCCC
Q 013277 370 VEGISELQVPPGT--------QPGDVLVLAKKGAPK 397 (446)
Q Consensus 370 ldG~~~l~i~~~~--------~~g~~~~l~g~G~P~ 397 (446)
+||...|.||.|+ +++.++-|.|.|=+.
T Consensus 96 ~dG~~~i~IPaG~YDy~I~~P~~~~kiwIaGd~g~~ 131 (161)
T PF10365_consen 96 VDGEASIDIPAGTYDYCIAAPQPGGKIWIAGDGGDG 131 (161)
T ss_pred ecCceEEEecCceeEEEEecCCCCCeEEEecCCCCC
Confidence 5666677777763 778999999998553
No 209
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=20.86 E-value=2.5e+02 Score=23.85 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=5.1
Q ss_pred eeecccccC
Q 013277 222 LETCEVCTG 230 (446)
Q Consensus 222 ~~~C~~C~G 230 (446)
...|..|+.
T Consensus 70 ~~~C~~C~~ 78 (115)
T COG0375 70 ECWCLDCGQ 78 (115)
T ss_pred EEEeccCCC
Confidence 345777744
No 210
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=20.54 E-value=2.5e+02 Score=20.21 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhc
Q 013277 98 YRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141 (446)
Q Consensus 98 yr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 141 (446)
.|...+.-||+. ...+..+.+.+.|..|++.++....+.+
T Consensus 15 ~r~~~~~~~p~~----~~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 15 QRPKLKKENPDA----SVTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345556678874 4677889999999999998877655554
No 211
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=20.46 E-value=53 Score=27.29 Aligned_cols=23 Identities=30% Similarity=0.858 Sum_probs=0.0
Q ss_pred ecccccCCccccCcceeeCCCCC
Q 013277 224 TCEVCTGTGAKMGSKMRICSTCG 246 (446)
Q Consensus 224 ~C~~C~G~G~~~~~~~~~C~~C~ 246 (446)
.|.-|.+.|.........|..|+
T Consensus 37 aCeiC~~~GY~q~g~~lvC~~C~ 59 (102)
T PF10080_consen 37 ACEICGPKGYYQEGDQLVCKNCG 59 (102)
T ss_pred eccccCCCceEEECCEEEEecCC
No 212
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.41 E-value=60 Score=36.43 Aligned_cols=41 Identities=24% Similarity=0.607 Sum_probs=27.4
Q ss_pred ceeecccccCCccc-cCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCc
Q 013277 221 HLETCEVCTGTGAK-MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (446)
Q Consensus 221 ~~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 274 (446)
....|+.|+..=.- .....-.|..|+-+..+. ..|+.|++.
T Consensus 443 ~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p-------------~~Cp~Cgs~ 484 (730)
T COG1198 443 YIAECPNCDSPLTLHKATGQLRCHYCGYQEPIP-------------QSCPECGSE 484 (730)
T ss_pred CcccCCCCCcceEEecCCCeeEeCCCCCCCCCC-------------CCCCCCCCC
Confidence 45679999865221 222467899997663321 689999998
Done!