Query 013277
Match_columns 446
No_of_seqs 383 out of 2739
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 07:33:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 2.4E-65 8.3E-70 509.2 19.1 286 74-432 25-315 (329)
2 1nlt_A Protein YDJ1, mitochond 100.0 4E-58 1.4E-62 441.3 22.9 233 192-428 8-248 (248)
3 3agx_A DNAJ homolog subfamily 100.0 9.1E-45 3.1E-49 332.5 20.6 178 195-432 2-180 (181)
4 2q2g_A HSP40 protein, heat sho 100.0 1.8E-43 6.3E-48 323.7 21.0 176 195-431 3-179 (180)
5 1c3g_A Heat shock protein 40; 100.0 1.8E-41 6.1E-46 307.7 16.0 169 196-428 1-170 (170)
6 3i38_A Putative chaperone DNAJ 99.9 6.4E-26 2.2E-30 190.2 10.5 95 336-433 2-96 (109)
7 1xao_A YDJ1, mitochondrial pro 99.9 4.4E-24 1.5E-28 182.5 10.6 93 340-433 1-98 (121)
8 1bq0_A DNAJ, HSP40; chaperone, 99.9 1.9E-23 6.5E-28 173.7 5.2 97 75-172 1-100 (103)
9 1hdj_A Human HSP40, HDJ-1; mol 99.9 6.8E-22 2.3E-26 155.5 7.8 73 75-147 1-73 (77)
10 2cug_A Mkiaa0962 protein; DNAJ 99.8 5.5E-21 1.9E-25 154.2 8.4 75 71-145 11-85 (88)
11 2ctr_A DNAJ homolog subfamily 99.8 3.7E-21 1.3E-25 155.2 6.8 74 75-148 5-78 (88)
12 2ctt_A DNAJ homolog subfamily 99.8 1.5E-21 5.2E-26 162.5 4.5 103 195-301 1-103 (104)
13 2dn9_A DNAJ homolog subfamily 99.8 1.4E-20 4.6E-25 148.8 7.8 71 75-145 5-76 (79)
14 2ctp_A DNAJ homolog subfamily 99.8 8.1E-21 2.8E-25 149.7 6.4 71 75-145 5-75 (78)
15 2och_A Hypothetical protein DN 99.8 2.3E-20 8E-25 145.2 7.3 70 73-144 4-73 (73)
16 2ctq_A DNAJ homolog subfamily 99.8 2.8E-20 9.5E-25 156.9 7.8 75 72-146 15-90 (112)
17 2ej7_A HCG3 gene; HCG3 protein 99.8 2.6E-20 8.9E-25 148.2 6.9 71 76-146 8-80 (82)
18 2dmx_A DNAJ homolog subfamily 99.8 2.7E-20 9.1E-25 151.5 7.0 73 76-148 8-82 (92)
19 2o37_A Protein SIS1; HSP40, J- 99.8 2.8E-20 9.7E-25 151.3 5.9 74 73-148 4-77 (92)
20 2lgw_A DNAJ homolog subfamily 99.8 5E-20 1.7E-24 151.7 6.5 72 77-148 2-75 (99)
21 2ctw_A DNAJ homolog subfamily 99.8 6.9E-20 2.4E-24 153.7 6.6 76 72-147 12-88 (109)
22 2yua_A Williams-beuren syndrom 99.8 1.6E-19 5.5E-24 148.9 7.5 69 74-142 14-83 (99)
23 1wjz_A 1700030A21RIK protein; 99.8 1.6E-19 5.6E-24 147.4 5.1 70 74-143 13-89 (94)
24 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 8.1E-19 2.8E-23 147.2 5.1 72 72-143 10-86 (109)
25 3apq_A DNAJ homolog subfamily 99.7 1.4E-18 4.7E-23 161.9 6.3 72 77-148 2-74 (210)
26 2ys8_A RAB-related GTP-binding 99.7 2.2E-18 7.5E-23 139.5 6.2 64 74-137 24-87 (90)
27 1faf_A Large T antigen; J doma 99.7 1.2E-17 4E-22 131.8 4.9 67 76-146 10-78 (79)
28 2l6l_A DNAJ homolog subfamily 99.7 1.9E-17 6.4E-22 147.6 6.7 69 75-143 8-83 (155)
29 1gh6_A Large T antigen; tumor 99.7 4.2E-18 1.4E-22 143.4 0.8 65 76-143 7-73 (114)
30 2pf4_E Small T antigen; PP2A, 99.7 1.1E-17 3.9E-22 150.3 1.8 65 76-143 10-76 (174)
31 3bvo_A CO-chaperone protein HS 99.6 2.9E-16 1E-20 145.9 8.6 67 75-141 41-115 (207)
32 1iur_A KIAA0730 protein; DNAJ 99.6 6.1E-17 2.1E-21 130.1 2.6 62 75-136 14-77 (88)
33 3hho_A CO-chaperone protein HS 99.6 3.3E-16 1.1E-20 142.0 6.2 67 76-142 3-77 (174)
34 1n4c_A Auxilin; four helix bun 99.6 2.4E-16 8.2E-21 142.5 4.0 63 76-138 116-182 (182)
35 1fpo_A HSC20, chaperone protei 99.6 5.9E-16 2E-20 139.8 5.3 65 78-142 2-74 (171)
36 2guz_A Mitochondrial import in 99.6 5.8E-16 2E-20 119.5 3.7 58 75-135 12-70 (71)
37 3apo_A DNAJ homolog subfamily 99.6 2.6E-16 9E-21 173.7 1.5 78 72-149 16-94 (780)
38 2qwo_B Putative tyrosine-prote 99.6 5.6E-16 1.9E-20 125.0 2.9 55 77-131 33-91 (92)
39 3ag7_A Putative uncharacterize 99.5 7.7E-16 2.6E-20 128.0 1.3 61 72-133 36-104 (106)
40 3uo3_A J-type CO-chaperone JAC 99.5 2.8E-15 9.7E-20 136.4 3.7 65 76-142 10-81 (181)
41 1exk_A DNAJ protein; extended 99.5 3.5E-14 1.2E-18 111.8 6.8 78 212-293 1-78 (79)
42 1nlt_A Protein YDJ1, mitochond 99.5 4.3E-14 1.5E-18 135.2 7.2 118 222-349 54-247 (248)
43 3i38_A Putative chaperone DNAJ 99.1 9.7E-11 3.3E-15 97.7 4.6 52 296-349 39-90 (109)
44 1xao_A YDJ1, mitochondrial pro 99.0 2.7E-10 9.1E-15 96.9 5.9 55 295-349 34-92 (121)
45 2guz_B Mitochondrial import in 98.9 1.2E-09 4.3E-14 82.0 3.8 53 77-132 4-59 (65)
46 2y4t_A DNAJ homolog subfamily 98.8 1.5E-09 5.2E-14 109.3 5.2 65 76-140 381-449 (450)
47 1c3g_A Heat shock protein 40; 98.7 3.9E-09 1.3E-13 95.0 2.8 92 347-439 2-102 (170)
48 3lz8_A Putative chaperone DNAJ 98.7 2.7E-09 9.4E-14 105.8 1.9 96 343-439 138-247 (329)
49 2q2g_A HSP40 protein, heat sho 98.7 6E-09 2E-13 94.7 3.2 94 345-439 3-108 (180)
50 3agx_A DNAJ homolog subfamily 98.6 9.5E-09 3.3E-13 93.4 2.7 93 345-439 2-108 (181)
51 2ctt_A DNAJ homolog subfamily 97.8 1.2E-05 4.2E-10 66.0 3.5 51 221-283 44-99 (104)
52 1exk_A DNAJ protein; extended 97.7 1.3E-05 4.5E-10 62.3 2.7 47 221-279 27-78 (79)
53 3pmq_A Decaheme cytochrome C M 97.7 1.2E-06 4.1E-11 93.7 -4.5 78 199-276 168-257 (669)
54 3lcz_A YCZA, inhibitor of trap 97.3 4.5E-05 1.6E-09 54.5 1.0 28 266-293 10-37 (53)
55 2bx9_A Anti-trap, AT, tryptoph 97.2 4.7E-05 1.6E-09 54.5 -0.4 30 222-254 9-38 (53)
56 3lcz_A YCZA, inhibitor of trap 97.1 0.00021 7E-09 51.1 2.3 13 266-278 24-36 (53)
57 2bx9_A Anti-trap, AT, tryptoph 96.6 0.00089 3E-08 47.8 2.3 29 239-279 9-37 (53)
58 2pzi_A Probable serine/threoni 84.8 0.36 1.2E-05 51.7 2.4 48 74-128 626-675 (681)
59 1ltl_A DNA replication initiat 61.1 11 0.00037 35.7 5.6 86 239-336 134-224 (279)
60 1uzc_A Hypothetical protein FL 41.8 45 0.0015 24.6 5.1 53 88-142 11-66 (71)
61 2vl6_A SSO MCM N-TER, minichro 40.0 1.4E+02 0.0049 27.5 9.7 86 239-336 141-237 (268)
62 2qkd_A Zinc finger protein ZPR 32.8 33 0.0011 34.2 4.1 76 239-315 12-112 (404)
63 2cqn_A Formin-binding protein 31.4 59 0.002 24.3 4.4 53 89-142 6-62 (77)
64 1wgf_A Upstream binding factor 31.1 1.6E+02 0.0054 22.2 7.0 50 77-141 25-74 (90)
65 2qkd_A Zinc finger protein ZPR 28.8 51 0.0017 32.9 4.6 19 297-315 302-320 (404)
66 2b7e_A PRE-mRNA processing pro 26.4 78 0.0027 22.5 4.0 49 92-142 3-56 (59)
67 2d7l_A WD repeat and HMG-box D 24.7 1.3E+02 0.0043 22.6 5.2 44 95-141 17-60 (81)
68 4a3n_A Transcription factor SO 21.9 1.3E+02 0.0045 21.2 4.7 42 95-140 14-55 (71)
69 3nyb_B Protein AIR2; polya RNA 21.7 37 0.0013 25.9 1.6 53 222-278 5-59 (83)
70 2aus_D NOP10, ribosome biogene 21.0 61 0.0021 23.2 2.5 10 266-275 18-27 (60)
71 2dod_A Transcription elongatio 21.0 1.7E+02 0.0059 22.1 5.3 54 88-143 13-68 (82)
72 3zxf_A Galectin-7; sugar bindi 20.8 1.4E+02 0.0048 24.6 5.3 44 375-418 9-60 (138)
73 2apo_B Ribosome biogenesis pro 20.8 48 0.0017 23.7 1.9 9 266-274 19-27 (60)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=2.4e-65 Score=509.16 Aligned_cols=286 Identities=31% Similarity=0.516 Sum_probs=158.6
Q ss_pred ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCC
Q 013277 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG 153 (446)
Q Consensus 74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~ 153 (446)
+..+|||++|||+++|+.+|||+|||+||++||||+++++.+.++|++|++||++|+||.+|+.||+|+..+...+.+++
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~ 104 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQ 104 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccc
Confidence 44579999999999999999999999999999999998888999999999999999999999999999543211111100
Q ss_pred ----CCCC-cCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccc
Q 013277 154 ----SSAY-TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVC 228 (446)
Q Consensus 154 ----~~~~-~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C 228 (446)
.++| ..++.|+|++||+++ +.+ . +++...++.|+.++|.|+|+|+|+|+++++.+++.+.|
T Consensus 105 ~~~~~~~f~~~~f~diF~~~Fg~~--g~~--------~-~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~--- 170 (329)
T 3lz8_A 105 RQTHEQSYSQQDFDDIFSSMFGQQ--AHQ--------R-RRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN--- 170 (329)
T ss_dssp -------------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC---
T ss_pred cccccCCcCCCchhhhhHhhhcCc--CCC--------C-CCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec---
Confidence 1112 124567788877631 100 0 11124578999999999999999999999998764421
Q ss_pred cCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCC
Q 013277 229 TGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG 308 (446)
Q Consensus 229 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G 308 (446)
|.|++. +...++++|+||||+++|
T Consensus 171 ------------------g~G~v~--------------------------------------~~~~~~l~V~IP~Gv~~G 194 (329)
T 3lz8_A 171 ------------------VFGMIE--------------------------------------SETPKTLNVKIPAGVVDG 194 (329)
T ss_dssp ------------------SCC-CC--------------------------------------EEEEEEEEEEECTTCCTT
T ss_pred ------------------CCeEEE--------------------------------------EecceEEEEeCCCCCCCC
Confidence 122211 122468999999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEE
Q 013277 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVL 388 (446)
Q Consensus 309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~ 388 (446)
++|+|+|+|+++++++.+|||||+|+|++|+.|+|+|+||+++++|+|+||++|++++|+||||++.|+||++++||+++
T Consensus 195 ~~Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~ 274 (329)
T 3lz8_A 195 QRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRL 274 (329)
T ss_dssp CEEEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEE
T ss_pred CEEEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEE
Confidence 99999999999887888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 389 ~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
+|+|+|||.. ..+|||||+|+|.||++||++|+++|++|..
T Consensus 275 rl~G~GmP~~---~~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~ 315 (329)
T 3lz8_A 275 RIKGKGLVSK---THTGDLFAVIKIVMPTKPDEKARELWQQLAA 315 (329)
T ss_dssp EETTCSCBCS---SCBCCEEEEEEECCCSSCCHHHHHHHHHHHH
T ss_pred EEcCCCCCCC---CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999975 3589999999999999999999999999876
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=4e-58 Score=441.30 Aligned_cols=233 Identities=27% Similarity=0.489 Sum_probs=208.4
Q ss_pred cccCCceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceee-eeeecCCC
Q 013277 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLF-SQVSVCPS 270 (446)
Q Consensus 192 ~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~ 270 (446)
..++.|++++|.|||||+|+|+++++.+++.+.|+.|+|+|++.+. ..+|+.|+|+|+++...++++ ++ +...+|+.
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~ 85 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV 85 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence 3578999999999999999999999999999999999999999887 589999999999988777777 54 44589999
Q ss_pred CCCcceEe--ceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcce
Q 013277 271 CGGEGEVI--SEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (446)
Q Consensus 271 C~G~G~~~--~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL 348 (446)
|+|+|+++ +++|..|+|.|.+.+.++++|+||+|+++|++|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+||
T Consensus 86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~-~g~~GDl~v~i~v~~h~~F~R~G~DL 164 (248)
T 1nlt_A 86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDL 164 (248)
T ss_dssp CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCC-CCCcceEEEEEEEecCccceeeCCEE
Confidence 99999999 8999999999999999999999999999999999999999976 56899999999999999999999999
Q ss_pred EEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCC--CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCC--CCcch
Q 013277 349 FSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNR--IRYVY 423 (446)
Q Consensus 349 ~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~--~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~--ls~~~ 423 (446)
|++++|||+|||+|++++|+||||+ +.|+||++ ++||++++|+|+|||..+++ .+|||||+|+|+||++ ||++|
T Consensus 165 ~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q 243 (248)
T 1nlt_A 165 VYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEEN 243 (248)
T ss_dssp EEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC--------
T ss_pred EEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHH
Confidence 9999999999999999999999996 78999998 99999999999999987654 6899999999999999 99999
Q ss_pred HHHHH
Q 013277 424 SPSLT 428 (446)
Q Consensus 424 ~~~l~ 428 (446)
+++|+
T Consensus 244 ~~~l~ 248 (248)
T 1nlt_A 244 LKKLE 248 (248)
T ss_dssp -----
T ss_pred HHhhC
Confidence 99985
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=9.1e-45 Score=332.50 Aligned_cols=178 Identities=24% Similarity=0.327 Sum_probs=157.4
Q ss_pred CCceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCc
Q 013277 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (446)
Q Consensus 195 g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 274 (446)
++|++++|.|||||+|+|+++++.+++
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~----------------------------------------------------- 28 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH----------------------------------------------------- 28 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE-----------------------------------------------------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec-----------------------------------------------------
Confidence 358999999999999999999987542
Q ss_pred ceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEee
Q 013277 275 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI 354 (446)
Q Consensus 275 G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~I 354 (446)
+|..|+|.|.+.+.++++|+||+|+++|++|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus 29 ------~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I 101 (181)
T 3agx_A 29 ------KRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARI 101 (181)
T ss_dssp ------EEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred ------ccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEc
Confidence 23334444445567899999999999999999999999987 57899999999999999999999999999999
Q ss_pred cHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277 355 SYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL 432 (446)
Q Consensus 355 sl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~ 432 (446)
||+||++|++++|+|+||+ +.|++|+++++|++++|+|+|||..++++.+|||||+|+|.||++||++|+++|++++.
T Consensus 102 sl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~~~ 180 (181)
T 3agx_A 102 SLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 180 (181)
T ss_dssp EHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHHSC
T ss_pred CHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhcc
Confidence 9999999999999999995 78999999999999999999999876556789999999999999999999999999863
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.8e-43 Score=323.68 Aligned_cols=176 Identities=20% Similarity=0.367 Sum_probs=162.0
Q ss_pred CCceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCc
Q 013277 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (446)
Q Consensus 195 g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 274 (446)
+.|++++|.|||||+|+|+++++.+++.+.|..
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------- 35 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------- 35 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT-----------------------------------------------
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC-----------------------------------------------
Confidence 679999999999999999999999988777631
Q ss_pred ceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEee
Q 013277 275 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI 354 (446)
Q Consensus 275 G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~I 354 (446)
|.+.+.++++|+||+|+++|++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus 36 --------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I 101 (180)
T 2q2g_A 36 --------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTI 101 (180)
T ss_dssp --------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred --------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEc
Confidence 233456899999999999999999999999966688999999999999999999999999999999
Q ss_pred cHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHh
Q 013277 355 SYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQ 431 (446)
Q Consensus 355 sl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~ 431 (446)
||+||++|++++|+|+||+ +.|.+|++++||++++|+|+|||..++++.+|||||+|+|.||++||++|+++|++++
T Consensus 102 sl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~~~ 179 (180)
T 2q2g_A 102 PLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179 (180)
T ss_dssp EHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHHHHC
T ss_pred CHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence 9999999999999999996 7899999999999999999999987665678999999999999999999999999885
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=1.8e-41 Score=307.73 Aligned_cols=169 Identities=22% Similarity=0.429 Sum_probs=153.7
Q ss_pred CceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcc
Q 013277 196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 275 (446)
Q Consensus 196 ~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 275 (446)
+|++++|.|||+|+|+|+++++.+.+.. + .
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~-------------------~--------------------------- 30 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P-------------------H--------------------------- 30 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-------------------T---------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-------------------C---------------------------
Confidence 3789999999999999999999987540 0 0
Q ss_pred eEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeec
Q 013277 276 EVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISIS 355 (446)
Q Consensus 276 ~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Is 355 (446)
|.+ +.++++|+||+|+++|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+||+++++|+
T Consensus 31 -------------G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is 96 (170)
T 1c3g_A 31 -------------GAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS 96 (170)
T ss_dssp -------------TEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCB
T ss_pred -------------CcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcC
Confidence 112 367899999999999999999999998777889999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeccCCe-EEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHH
Q 013277 356 YLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLT 428 (446)
Q Consensus 356 l~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~ 428 (446)
++||++|++++|+|+||+ +.|++|+++++|++++|+|+|||..++++.+|||||+|+|.||++||++|+++|+
T Consensus 97 l~eAllG~~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 170 (170)
T 1c3g_A 97 FKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 170 (170)
T ss_dssp HHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred HHHHhCCCeEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence 999999999999999996 7899999999999999999999987665678999999999999999999999874
No 6
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.93 E-value=6.4e-26 Score=190.19 Aligned_cols=95 Identities=23% Similarity=0.306 Sum_probs=88.8
Q ss_pred EeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEc
Q 013277 336 EEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTI 415 (446)
Q Consensus 336 ~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~ 415 (446)
++|+.|+|+|+||+++++|+|.||++|++++|+|+||.+.|+||+++++|++++|+|+|||.. + .+|||||+|+|.|
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~~-~--~~GDL~v~~~V~~ 78 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK-T--HTGDLFAVIKIVM 78 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBCS-S--CBCCEEEEEEECC
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCCC-C--CCcCEEEEEEEEC
Confidence 689999999999999999999999999999999999999999999999999999999999983 2 6899999999999
Q ss_pred CCCCCcchHHHHHHHhhc
Q 013277 416 PNRIRYVYSPSLTIIQLN 433 (446)
Q Consensus 416 P~~ls~~~~~~l~~l~~~ 433 (446)
|++||++|+++|+++...
T Consensus 79 P~~Ls~~q~~~l~~l~~~ 96 (109)
T 3i38_A 79 PTKPDEKARELWQQLAAA 96 (109)
T ss_dssp CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998753
No 7
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.4e-24 Score=182.50 Aligned_cols=93 Identities=26% Similarity=0.334 Sum_probs=83.7
Q ss_pred CcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCC--CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcC
Q 013277 340 GIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416 (446)
Q Consensus 340 ~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~--~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P 416 (446)
.|+|+|+||+++++|+|.||++|++++|+|+||+ +.|+||++ +++|++++|+|+|||..+++ .+|||||+|+|.||
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P 79 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP 79 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence 4899999999999999999999999999999997 79999999 99999999999999987654 68999999999999
Q ss_pred CC--CCcchHHHHHHHhhc
Q 013277 417 NR--IRYVYSPSLTIIQLN 433 (446)
Q Consensus 417 ~~--ls~~~~~~l~~l~~~ 433 (446)
++ |+++|+++|++++..
T Consensus 80 ~~~~ls~~q~~~l~~l~~~ 98 (121)
T 1xao_A 80 ENHFTSEENLKKLEEILPP 98 (121)
T ss_dssp CTTCSCHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHccc
Confidence 99 999999999999853
No 8
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.88 E-value=1.9e-23 Score=173.71 Aligned_cols=97 Identities=48% Similarity=0.796 Sum_probs=70.0
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCC
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG 153 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~ 153 (446)
|..|||+||||+++|+.+|||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|+.||++|++++..+..++
T Consensus 1 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~ 80 (103)
T 1bq0_A 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGG 80 (103)
T ss_dssp CCCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC---
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCC
Confidence 35799999999999999999999999999999999984 77889999999999999999999999999998877532111
Q ss_pred CCCCc--CCCcCccccccCCC
Q 013277 154 SSAYT--TNPFDLFETFFGPS 172 (446)
Q Consensus 154 ~~~~~--~~~~d~F~~fFg~~ 172 (446)
+++. .++.++|+++|+..
T Consensus 81 -~~~~~~~~~~~~f~~~f~~~ 100 (103)
T 1bq0_A 81 -GGFGGGADFSDIFGDVFGDI 100 (103)
T ss_dssp ---------------------
T ss_pred -CCCCCCCCHHHHHHHHHHhh
Confidence 1111 24456777777643
No 9
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.85 E-value=6.8e-22 Score=155.53 Aligned_cols=73 Identities=62% Similarity=1.042 Sum_probs=69.4
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~ 147 (446)
|..|||+||||+++|+.+|||+|||+|++++|||+++++.+.+.|++|++||++|+||.+|+.||++|.+++.
T Consensus 1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 4579999999999999999999999999999999998888999999999999999999999999999988765
No 10
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=5.5e-21 Score=154.23 Aligned_cols=75 Identities=51% Similarity=0.862 Sum_probs=69.7
Q ss_pred eecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccc
Q 013277 71 SVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG 145 (446)
Q Consensus 71 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~ 145 (446)
.......|||+||||+++|+.+|||+|||+|+++||||+++++.+.+.|++|++||++|+||.+|+.||++|+.+
T Consensus 11 ~~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 11 SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp CCCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred hhccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 345567899999999999999999999999999999999998889999999999999999999999999998753
No 11
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.7e-21 Score=155.23 Aligned_cols=74 Identities=55% Similarity=0.907 Sum_probs=69.5
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~ 148 (446)
...|||+||||+++|+.+|||+|||+|++++|||+++++.+.++|++|++||++|+||.+|+.||.+|.+++..
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 78 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS 78 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence 35689999999999999999999999999999999998888999999999999999999999999999877654
No 12
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-21 Score=162.47 Aligned_cols=103 Identities=34% Similarity=0.697 Sum_probs=93.8
Q ss_pred CCceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCc
Q 013277 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (446)
Q Consensus 195 g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 274 (446)
+.|++++|.|+|||+|+|.++++.+++.+.|+.|+|+|.+.+....+|+.|+|+|++...+ |+|++..+|+.|+|+
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~ 76 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGR 76 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCc
Confidence 3578899999999999999999999999999999999999888889999999999886543 667777899999999
Q ss_pred ceEeceeeeecCCceEEEEeeEEEEEe
Q 013277 275 GEVISEYCRKCSGEGRIRLKKNIKVKV 301 (446)
Q Consensus 275 G~~~~~~C~~C~G~G~v~~~~~l~V~I 301 (446)
|++++++|..|+|.|.+.+.++|+|+|
T Consensus 77 G~~i~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 77 GSIIISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred ceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence 999999999999999999988888765
No 13
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=148.81 Aligned_cols=71 Identities=61% Similarity=1.022 Sum_probs=66.3
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccc
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG 145 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~ 145 (446)
...|||+||||+++|+.+|||+|||+|++++|||+++. +.+.+.|++|++||++|+||.+|+.||++|..+
T Consensus 5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 45689999999999999999999999999999999974 678999999999999999999999999998754
No 14
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.1e-21 Score=149.73 Aligned_cols=71 Identities=55% Similarity=0.953 Sum_probs=67.2
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccc
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG 145 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~ 145 (446)
...|||+||||+++|+.+|||+|||++++++|||+++.+++.+.|++|++||++|+||.+|+.||++|.++
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 35689999999999999999999999999999999988889999999999999999999999999998764
No 15
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.81 E-value=2.3e-20 Score=145.19 Aligned_cols=70 Identities=54% Similarity=0.874 Sum_probs=62.3
Q ss_pred cccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhcccc
Q 013277 73 VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA 144 (446)
Q Consensus 73 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~ 144 (446)
+....|||+||||+++|+.+|||+||+++++++|||++++ +.+.|++|++||++|+||.+|+.||++|++
T Consensus 4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 4456799999999999999999999999999999999864 468999999999999999999999999863
No 16
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-20 Score=156.87 Aligned_cols=75 Identities=31% Similarity=0.541 Sum_probs=69.1
Q ss_pred ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhccccce
Q 013277 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV 146 (446)
Q Consensus 72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~ 146 (446)
......|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|.+++
T Consensus 15 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 15 RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 3345689999999999999999999999999999999998 57889999999999999999999999999997764
No 17
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-20 Score=148.22 Aligned_cols=71 Identities=54% Similarity=0.870 Sum_probs=65.7
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhhhhhhccccce
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV 146 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~ 146 (446)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .+.+.|++|++||++|+||.+|+.||++|.+++
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 46899999999999999999999999999999999763 577899999999999999999999999997654
No 18
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.7e-20 Score=151.47 Aligned_cols=73 Identities=52% Similarity=0.797 Sum_probs=67.4
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~ 148 (446)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .+.++|++|++||++|+||.+|+.||++|.+++..
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 35899999999999999999999999999999999753 57889999999999999999999999999887654
No 19
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.8e-20 Score=151.30 Aligned_cols=74 Identities=49% Similarity=0.775 Sum_probs=67.5
Q ss_pred cccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277 73 VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (446)
Q Consensus 73 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~ 148 (446)
+.+..|||+||||+++|+.+|||+|||+|++++|||+++. ..++|++|++||++|+||.+|+.||++|.++++.
T Consensus 4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 77 (92)
T 2o37_A 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG--DTEKFKEISEAFEILNDPQKREIYDQYGLEAARS 77 (92)
T ss_dssp CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC--CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence 4567899999999999999999999999999999999854 4679999999999999999999999999887654
No 20
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.79 E-value=5e-20 Score=151.71 Aligned_cols=72 Identities=53% Similarity=0.888 Sum_probs=64.2
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~ 148 (446)
.|||+||||+++|+.+|||+|||+|+++||||+++.. .+.+.|++|++||++|+||.+|+.||++|.+++..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 5899999999999999999999999999999999753 47889999999999999999999999999877653
No 21
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=6.9e-20 Score=153.67 Aligned_cols=76 Identities=45% Similarity=0.801 Sum_probs=69.5
Q ss_pred ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (446)
Q Consensus 72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~ 147 (446)
......|||+||||+++|+.+|||+|||+|++++|||++++ +.+.++|++|++||++|+||.+|+.||++|..++.
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 34557899999999999999999999999999999999974 67889999999999999999999999999987654
No 22
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-19 Score=148.86 Aligned_cols=69 Identities=41% Similarity=0.583 Sum_probs=64.2
Q ss_pred ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (446)
Q Consensus 74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g 142 (446)
+...|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++.
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 45679999999999999999999999999999999997 4678999999999999999999999999953
No 23
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.77 E-value=1.6e-19 Score=147.37 Aligned_cols=70 Identities=31% Similarity=0.563 Sum_probs=64.2
Q ss_pred ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHHHhhcchhhhhhhhhhccc
Q 013277 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-------PGATEKFKEISAAYEVLSDDKKRAMYDQYGE 143 (446)
Q Consensus 74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-------~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~ 143 (446)
+...|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||.+..
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 456799999999999999999999999999999999863 4578999999999999999999999999753
No 24
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.74 E-value=8.1e-19 Score=147.19 Aligned_cols=72 Identities=38% Similarity=0.631 Sum_probs=66.2
Q ss_pred ecccCcCchhhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHHHhhcchhhhhhhhhhccc
Q 013277 72 VVCASGDYYATLGVPKSA-SGKEIKAAYRKLARQYHPDVNKE----PGATEKFKEISAAYEVLSDDKKRAMYDQYGE 143 (446)
Q Consensus 72 ~~~~~~d~Y~iLgv~~~a-s~~eIk~ayr~l~~~~HPD~~~~----~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~ 143 (446)
......|||+||||+++| +.+|||+|||+|++++|||+++. +.+.+.|++|++||++|+||.+|+.||+++.
T Consensus 10 ~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp STTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 444578999999999999 99999999999999999999875 5678999999999999999999999999874
No 25
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.74 E-value=1.4e-18 Score=161.92 Aligned_cols=72 Identities=47% Similarity=0.845 Sum_probs=67.7
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~ 148 (446)
.|||++|||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|.+++..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~ 74 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 74 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccc
Confidence 48999999999999999999999999999999996 5778999999999999999999999999999887654
No 26
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=139.47 Aligned_cols=64 Identities=38% Similarity=0.504 Sum_probs=60.5
Q ss_pred ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhh
Q 013277 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137 (446)
Q Consensus 74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~ 137 (446)
....|||+||||+++|+.+|||+|||+|+++||||+++++++.++|++|++||++|+||.+|+.
T Consensus 24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 4568999999999999999999999999999999999988999999999999999999999864
No 27
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.69 E-value=1.2e-17 Score=131.78 Aligned_cols=67 Identities=15% Similarity=0.297 Sum_probs=60.0
Q ss_pred CcCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccce
Q 013277 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV 146 (446)
Q Consensus 76 ~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~ 146 (446)
..++|+||||+++ |+.+|||+|||+|++++|||++. +.++|++|++||++|+|+.+|.. |.||..++
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~---~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~ 78 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVYNLR-MNLGGTGF 78 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC---CHHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---CHHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence 3589999999999 99999999999999999999974 46899999999999999999987 56776553
No 28
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=147.59 Aligned_cols=69 Identities=32% Similarity=0.549 Sum_probs=63.1
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHHhhcchhhhhhhhhhccc
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-------ATEKFKEISAAYEVLSDDKKRAMYDQYGE 143 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~-------~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~ 143 (446)
...|||+||||+++|+.+|||+|||+|++++|||+++... +.+.|++|++||++|+||.+|+.||..+.
T Consensus 8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 4569999999999999999999999999999999997642 56899999999999999999999998764
No 29
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.68 E-value=4.2e-18 Score=143.44 Aligned_cols=65 Identities=31% Similarity=0.510 Sum_probs=60.5
Q ss_pred CcCchhhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccc
Q 013277 76 SGDYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGE 143 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~ 143 (446)
..+||+||||+++|+. +|||+|||+|++++|||++++ .++|++|++||++|+||.+|+.||.+|.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 4589999999999999 999999999999999999865 5789999999999999999999999874
No 30
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.66 E-value=1.1e-17 Score=150.30 Aligned_cols=65 Identities=29% Similarity=0.453 Sum_probs=58.0
Q ss_pred CcCchhhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccc
Q 013277 76 SGDYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGE 143 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~ 143 (446)
..|||++|||+++|+ .+|||+|||++|+++|||++++ .++|++|++||++|+||.+|+.||+||.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 468999999999998 6999999999999999999865 3789999999999999999999999985
No 31
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=145.88 Aligned_cols=67 Identities=21% Similarity=0.404 Sum_probs=59.9
Q ss_pred cCcCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhhc
Q 013277 75 ASGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQY 141 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 141 (446)
...|||++|||+++ ++.++||+|||+|+++||||++++.. +.++|++|++||++|+||.+|+.||..
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~ 115 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK 115 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 36799999999986 78999999999999999999987532 457899999999999999999999963
No 32
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.63 E-value=6.1e-17 Score=130.08 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=56.6
Q ss_pred cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhh
Q 013277 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRA 136 (446)
Q Consensus 75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~ 136 (446)
...++|+||||+++|+.+|||+|||+|+++||||++++. .+.++|++|++||++|+|...|.
T Consensus 14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence 456899999999999999999999999999999999863 47899999999999999988774
No 33
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.61 E-value=3.3e-16 Score=141.97 Aligned_cols=67 Identities=27% Similarity=0.496 Sum_probs=60.8
Q ss_pred CcCchhhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277 76 SGDYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~~g 142 (446)
..|||++|||+++++ .++||+|||+|+++||||+++... +.+.|.+|++||++|+||.+|+.||...
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 77 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHc
Confidence 468999999999998 999999999999999999987643 5689999999999999999999999853
No 34
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.60 E-value=2.4e-16 Score=142.53 Aligned_cols=63 Identities=21% Similarity=0.412 Sum_probs=58.8
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhcchhhhhhhh
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMY 138 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~y 138 (446)
..|||++|||+++|+.+|||+|||+++++||||+++... +.++|++|++||++|+|+.+|+.|
T Consensus 116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 369999999999999999999999999999999997644 788999999999999999999987
No 35
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.59 E-value=5.9e-16 Score=139.82 Aligned_cols=65 Identities=28% Similarity=0.455 Sum_probs=59.9
Q ss_pred CchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277 78 DYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (446)
Q Consensus 78 d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~~g 142 (446)
|||++|||++++ +.++||+|||+|+++||||++++.. +.++|+.|++||++|+||.+|+.||...
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 799999999999 9999999999999999999987643 4578999999999999999999999864
No 36
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.8e-16 Score=119.50 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=52.5
Q ss_pred cCcCchhhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhh
Q 013277 75 ASGDYYATLGVPK-SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135 (446)
Q Consensus 75 ~~~d~Y~iLgv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r 135 (446)
...++|+||||++ +|+.+|||+|||+|++++|||++ ++.+.|++|++||++|+|+..|
T Consensus 12 ~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~---g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 12 NSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT---CCHHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHhhhhhc
Confidence 3468999999999 79999999999999999999996 4567999999999999998765
No 37
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.57 E-value=2.6e-16 Score=173.74 Aligned_cols=78 Identities=44% Similarity=0.749 Sum_probs=40.9
Q ss_pred ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeec
Q 013277 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST 149 (446)
Q Consensus 72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~ 149 (446)
......|||++|||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||+||+++++..
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 4556789999999999999999999999999999999996 57788999999999999999999999999999887654
No 38
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.57 E-value=5.6e-16 Score=124.96 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=50.8
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhcch
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSD 131 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d 131 (446)
.++|++|||+++|+.+|||+|||+++++||||++++.. +.++|++|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999997532 78899999999999975
No 39
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.54 E-value=7.7e-16 Score=127.97 Aligned_cols=61 Identities=13% Similarity=0.262 Sum_probs=53.2
Q ss_pred ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------chHHHHHHHHHHHhhcchhh
Q 013277 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--------GATEKFKEISAAYEVLSDDK 133 (446)
Q Consensus 72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--------~~~~~f~~i~~Ay~vL~d~~ 133 (446)
..+...|||++||++. |+.+|||+|||+++++||||+++++ .+.++|++|++||++|+|+.
T Consensus 36 ~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 36 ILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 3345679999999996 9999999999999999999998642 25789999999999999975
No 40
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.52 E-value=2.8e-15 Score=136.40 Aligned_cols=65 Identities=25% Similarity=0.496 Sum_probs=59.1
Q ss_pred CcCchhhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277 76 SGDYYATL------GVPK-SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (446)
Q Consensus 76 ~~d~Y~iL------gv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g 142 (446)
..|||++| |+++ +|+.++||+|||+|+++||||++++ +.++|++|++||++|+||.+|+.||...
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 46999999 4665 9999999999999999999999875 6788999999999999999999999843
No 41
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.49 E-value=3.5e-14 Score=111.77 Aligned_cols=78 Identities=44% Similarity=0.981 Sum_probs=69.1
Q ss_pred cceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEE
Q 013277 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (446)
Q Consensus 212 G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v 291 (446)
|++++|.+++.+.|+.|+|+|........+|+.|+|+|+++..+ |+|+...+|+.|+|.|++++++|..|+|.|.+
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~ 76 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV 76 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence 56788999999999999999998777778999999999987643 77777789999999999999999999999987
Q ss_pred EE
Q 013277 292 RL 293 (446)
Q Consensus 292 ~~ 293 (446)
.+
T Consensus 77 ~~ 78 (79)
T 1exk_A 77 ER 78 (79)
T ss_dssp EC
T ss_pred ee
Confidence 53
No 42
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.47 E-value=4.3e-14 Score=135.22 Aligned_cols=118 Identities=22% Similarity=0.476 Sum_probs=82.9
Q ss_pred eeecccccCCccccC---------cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------- 285 (446)
...|+.|+|+|.... ....+|+.|+|+|+++... .+|+.|+|.|.+.+.+-.+.
T Consensus 54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 123 (248)
T 1nlt_A 54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPK----------DRCKSCNGKKVENERKILEVHVEPGMK 123 (248)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTT----------SBCSSSTTSCEEEEEEEEEEEECTTCC
T ss_pred CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccC----------CCCcccCCCceEeeeEEEEEEECCCcc
Confidence 378999999997521 2366899999999876321 78999999998765433322
Q ss_pred -------CCceE---------E----------------------------------------EEeeEEEEEeCCC--CCC
Q 013277 286 -------SGEGR---------I----------------------------------------RLKKNIKVKVPPG--VST 307 (446)
Q Consensus 286 -------~G~G~---------v----------------------------------------~~~~~l~V~Ip~G--~~~ 307 (446)
.|+|. + .+.+.++|+||+| +++
T Consensus 124 ~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~ 203 (248)
T 1nlt_A 124 DGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAP 203 (248)
T ss_dssp TTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCST
T ss_pred CCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCC
Confidence 33332 1 2344799999999 999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeccC--cccCCcceE
Q 013277 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDLF 349 (446)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~--f~R~g~dL~ 349 (446)
|++++|+|+|++..++...|||||+|+|..|.. +..++.+|+
T Consensus 204 g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~l 247 (248)
T 1nlt_A 204 GMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKKL 247 (248)
T ss_dssp TCEEEETTCSCBCSSSCSBCCEEEEEEEECCC------------
T ss_pred CeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHhh
Confidence 999999999999764436799999999999887 776665554
No 43
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=9.7e-11 Score=97.69 Aligned_cols=52 Identities=27% Similarity=0.524 Sum_probs=44.8
Q ss_pred EEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277 296 NIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (446)
Q Consensus 296 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~ 349 (446)
.++|+||+|+++|++++++|+|++. .+ .+|||||+|+|..+..+..++.+++
T Consensus 39 ~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~~q~~~l 90 (109)
T 3i38_A 39 SILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDEKARELW 90 (109)
T ss_dssp CEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCHHHHHHH
T ss_pred CEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCHHHHHHH
Confidence 4689999999999999999999997 34 7899999999999888776665554
No 44
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.01 E-value=2.7e-10 Score=96.86 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=42.8
Q ss_pred eEEEEEeCCC--CCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccC--cccCCcceE
Q 013277 295 KNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDLF 349 (446)
Q Consensus 295 ~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~--f~R~g~dL~ 349 (446)
+.++|+||+| +++|++++++|+|++..++...|||||+|+|+.+.. +..++.+++
T Consensus 34 ~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~l 92 (121)
T 1xao_A 34 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKKL 92 (121)
T ss_dssp CEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHHH
T ss_pred CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHH
Confidence 3578999999 999999999999999765446899999999998887 776665553
No 45
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.2e-09 Score=81.96 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=48.4
Q ss_pred cCchhhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchh
Q 013277 77 GDYYATLGVPKS---ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132 (446)
Q Consensus 77 ~d~Y~iLgv~~~---as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 132 (446)
.+.|.||||+++ ++.++|+++||+|+..+|||+. +......+|++|++.|...
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG---GS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG---GSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHH
Confidence 467999999999 9999999999999999999997 6788999999999999754
No 46
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.84 E-value=1.5e-09 Score=109.34 Aligned_cols=65 Identities=49% Similarity=0.714 Sum_probs=55.8
Q ss_pred CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (446)
Q Consensus 76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~yd~ 140 (446)
..++|++||+.+.++.++|+++|+++++++|||+.+.+. +.+.|++|++||++|+||++|..||+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 348999999999999999999999999999999987643 78899999999999999999999997
No 47
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.71 E-value=3.9e-09 Score=95.03 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=74.6
Q ss_pred ceEEEEeecHHHHhCCCEEEEecc----CC-----eEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCC
Q 013277 347 DLFSTISISYLDAIMGTVVKVKTV----EG-----ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPN 417 (446)
Q Consensus 347 dL~~~~~Isl~eAl~G~~~~i~~l----dG-----~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~ 417 (446)
|+.+++.|||.||+.|++++|... +| .++|+||+|+..|++++++|+|-|...+ +..|||||++++.-..
T Consensus 2 d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g-g~~GDl~v~i~v~~h~ 80 (170)
T 1c3g_A 2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEKSHP 80 (170)
T ss_dssp EEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSS-SCBCEEEEEEEECCCS
T ss_pred CEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCCccCCCEEEEeccccCCCCC-CccccEEEEEEEccCC
Confidence 889999999999999999888643 23 3589999999999999999999865433 4679999999998777
Q ss_pred CCCcchHHHHHHHhhccchhee
Q 013277 418 RIRYVYSPSLTIIQLNSVIILL 439 (446)
Q Consensus 418 ~ls~~~~~~l~~l~~~~~~~~~ 439 (446)
.+..+..+++..+....++|+|
T Consensus 81 ~F~R~G~DL~~~~~Isl~eAll 102 (170)
T 1c3g_A 81 NFKRDGDDLIYTLPLSFKESLL 102 (170)
T ss_dssp SEEEETTEEEEEECCBHHHHHH
T ss_pred ccEEeCCcEeEEEEcCHHHHhC
Confidence 7777776666666666666654
No 48
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.71 E-value=2.7e-09 Score=105.77 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=72.5
Q ss_pred cCCcceEEEEeecHHHHhCCCEEEEecc------CC--------eEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEE
Q 013277 343 RDGIDLFSTISISYLDAIMGTVVKVKTV------EG--------ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHL 408 (446)
Q Consensus 343 R~g~dL~~~~~Isl~eAl~G~~~~i~~l------dG--------~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~ 408 (446)
+.|.||.+++.|+|.||+.|.++.|..- .| .++|+||+|+++|++++++|+|.|..++ +..||||
T Consensus 138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~g-g~~GDL~ 216 (329)
T 3lz8_A 138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENG-GPNGDLW 216 (329)
T ss_dssp CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC----CCCCCEE
T ss_pred CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCC-CCCCcEE
Confidence 5678888888899999998887666432 22 3579999999999999999999987543 4689999
Q ss_pred EEEEEEcCCCCCcchHHHHHHHhhccchhee
Q 013277 409 FTVKVTIPNRIRYVYSPSLTIIQLNSVIILL 439 (446)
Q Consensus 409 v~~~v~~P~~ls~~~~~~l~~l~~~~~~~~~ 439 (446)
|+|+|+-...+..+..+|+..+.+..|+++|
T Consensus 217 v~I~v~~h~~F~R~G~DL~~~~~Isl~eAll 247 (329)
T 3lz8_A 217 LVIHIAPHPLFDIVGHNLEIVLPLAPWEAAL 247 (329)
T ss_dssp EEECCCCCSSCEEETTEEEEEEEECHHHHHH
T ss_pred EEEEEecCCccEEcCCcEEEEEECCHHHHcC
Confidence 9999988777766666665555555555544
No 49
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.69 E-value=6e-09 Score=94.67 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=74.6
Q ss_pred CcceEEEEeecHHHHhCCCEEEEeccC------------CeEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEE
Q 013277 345 GIDLFSTISISYLDAIMGTVVKVKTVE------------GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVK 412 (446)
Q Consensus 345 g~dL~~~~~Isl~eAl~G~~~~i~~ld------------G~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~ 412 (446)
+.|+.+.+.|||.||+.|.+++|.... ..++|+||+|+..|++++++|+|-+... .+..|||||+++
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~-gg~~GDl~v~i~ 81 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESP-GTSPGDLVLIIQ 81 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTTCCTTCEEEETTCSCCSST-TSCCCEEEEEEE
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCC-CCccccEEEEEE
Confidence 679999999999999999998876431 2358999999999999999999987322 246799999999
Q ss_pred EEcCCCCCcchHHHHHHHhhccchhee
Q 013277 413 VTIPNRIRYVYSPSLTIIQLNSVIILL 439 (446)
Q Consensus 413 v~~P~~ls~~~~~~l~~l~~~~~~~~~ 439 (446)
+.-...+..+..+++..+....++|++
T Consensus 82 ~~~h~~F~R~G~DL~~~~~Isl~eAll 108 (180)
T 2q2g_A 82 TKTHPRFTRDDCHLIMKVTIPLVRALT 108 (180)
T ss_dssp ECCCSSCEEETTEEEEEEEEEHHHHHH
T ss_pred EEecccEEEcCCEEEEEEEcCHHHHhC
Confidence 987777777776666666666666654
No 50
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.63 E-value=9.5e-09 Score=93.39 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=72.3
Q ss_pred CcceEEEEeecHHHHhCCCEEEEecc------CC--------eEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEE
Q 013277 345 GIDLFSTISISYLDAIMGTVVKVKTV------EG--------ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFT 410 (446)
Q Consensus 345 g~dL~~~~~Isl~eAl~G~~~~i~~l------dG--------~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~ 410 (446)
+.|+.+.+.|||.||+.|.+++|... .| .++|+||+|+..|++++++|+|-+..+ +..|||||.
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~--g~~GDl~v~ 79 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSN--NIPADIVFV 79 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSS--SCCCCEEEE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCC--CCcccEEEE
Confidence 56899999999999999999877532 23 247999999999999999999988653 467999999
Q ss_pred EEEEcCCCCCcchHHHHHHHhhccchhee
Q 013277 411 VKVTIPNRIRYVYSPSLTIIQLNSVIILL 439 (446)
Q Consensus 411 ~~v~~P~~ls~~~~~~l~~l~~~~~~~~~ 439 (446)
+++.-...+..+..+++..+....++|++
T Consensus 80 i~~~~h~~F~R~G~DL~~~~~Isl~eAll 108 (181)
T 3agx_A 80 LKDKPHNIFKRDGSDVIYPARISLREALC 108 (181)
T ss_dssp EEECCCSSCEEETTEEEEEEEEEHHHHHH
T ss_pred EEEeccccceeeCCcEEEEEEcCHHHHhC
Confidence 99998777777776666666666666654
No 51
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=1.2e-05 Score=66.01 Aligned_cols=51 Identities=29% Similarity=0.720 Sum_probs=40.1
Q ss_pred ceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeee
Q 013277 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR 283 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~ 283 (446)
....|+.|+|+|.... ....+|+.|+|+|+++. .+|+.|+|.|++.+.+-.
T Consensus 44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~k~l 99 (104)
T 2ctt_A 44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII------------SPCVVCRGAGQAKQKKRS 99 (104)
T ss_dssp CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS------------SCCSSSSSCSEECCCCSS
T ss_pred CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC------------CcCCCCCCeeEEEEEEEE
Confidence 3578999999997532 23578999999999864 689999999998765433
No 52
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.72 E-value=1.3e-05 Score=62.28 Aligned_cols=47 Identities=32% Similarity=0.798 Sum_probs=37.4
Q ss_pred ceeecccccCCccccCc-----ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec
Q 013277 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (446)
Q Consensus 221 ~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 279 (446)
....|+.|+|+|..... ...+|+.|+|+|.++. .+|+.|+|.|++.+
T Consensus 27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~G~~~~ 78 (79)
T 1exk_A 27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVER 78 (79)
T ss_dssp CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEEC
T ss_pred cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC------------CcCCCCCCeEEEee
Confidence 35689999999976421 2468999999998753 68999999998753
No 53
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.72 E-value=1.2e-06 Score=93.66 Aligned_cols=78 Identities=19% Similarity=0.356 Sum_probs=59.3
Q ss_pred eEeeeeecccccccceeeeeccceeecccccCCccccCc---ceeeCCCCCCccEEEEe--------eeCCceee-eeee
Q 013277 199 RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS---KMRICSTCGGRGQVMRT--------DQTPFGLF-SQVS 266 (446)
Q Consensus 199 ~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~---~~~~C~~C~G~G~~~~~--------~~~~~g~~-~~~~ 266 (446)
.+++.++|+|+.+|.++++++.+.+.|..|+|+|++.+. ...+|+.|+|+...... ...-.|.| +...
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 468899999999999999999999999999999999887 57899999999421110 00111222 2336
Q ss_pred cCCCCCCcce
Q 013277 267 VCPSCGGEGE 276 (446)
Q Consensus 267 ~C~~C~G~G~ 276 (446)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 8999998774
No 54
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.34 E-value=4.5e-05 Score=54.53 Aligned_cols=28 Identities=43% Similarity=0.947 Sum_probs=20.5
Q ss_pred ecCCCCCCcceEeceeeeecCCceEEEE
Q 013277 266 SVCPSCGGEGEVISEYCRKCSGEGRIRL 293 (446)
Q Consensus 266 ~~C~~C~G~G~~~~~~C~~C~G~G~v~~ 293 (446)
.+|+.|+|+|.++.++|+.|+|.|.+.+
T Consensus 10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 10 TTCPNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp EECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred ccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence 5777777777777777777777776654
No 55
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.18 E-value=4.7e-05 Score=54.45 Aligned_cols=30 Identities=27% Similarity=0.751 Sum_probs=20.0
Q ss_pred eeecccccCCccccCcceeeCCCCCCccEEEEe
Q 013277 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 254 (446)
...|+.|+|+|.... .+|+.|+|.|+++..
T Consensus 9 ~~~C~~C~GsG~~~~---~~C~~C~G~G~v~~~ 38 (53)
T 2bx9_A 9 EVACPKCERAGEIEG---TPCPACSGKGVILTA 38 (53)
T ss_dssp EEECTTTTTSSEETT---EECTTTTTSSEEECH
T ss_pred cccCCCCcceeccCC---CCCccCCCCccEEEE
Confidence 456777777777642 467777777776553
No 56
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.11 E-value=0.00021 Score=51.09 Aligned_cols=13 Identities=38% Similarity=1.104 Sum_probs=7.1
Q ss_pred ecCCCCCCcceEe
Q 013277 266 SVCPSCGGEGEVI 278 (446)
Q Consensus 266 ~~C~~C~G~G~~~ 278 (446)
.+|+.|+|+|.+.
T Consensus 24 ~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 24 EPCPKCLGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEEE
T ss_pred CcCCCCCCcEEEE
Confidence 4555555555543
No 57
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.60 E-value=0.00089 Score=47.76 Aligned_cols=29 Identities=28% Similarity=0.878 Sum_probs=17.7
Q ss_pred eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec
Q 013277 239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (446)
Q Consensus 239 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 279 (446)
..+|+.|+|+|.++. .+|+.|+|.|+++.
T Consensus 9 ~~~C~~C~GsG~~~~------------~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEG------------TPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETT------------EECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCC------------CCCccCCCCccEEE
Confidence 456777777776531 46666666666543
No 58
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=84.75 E-value=0.36 Score=51.74 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=38.2
Q ss_pred ccCcCchhhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhh
Q 013277 74 CASGDYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEV 128 (446)
Q Consensus 74 ~~~~d~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~v 128 (446)
...+|||.+||++.++.. .+|++|||++|+..+++ .+++..|..|+.|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 446679999999777665 77999999999965544 5788888888875
No 59
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=61.11 E-value=11 Score=35.69 Aligned_cols=86 Identities=23% Similarity=0.364 Sum_probs=43.5
Q ss_pred eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEece-eeeecCCceEEEEeeEEEEEeCCC-CCCCC---EEEE
Q 013277 239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISE-YCRKCSGEGRIRLKKNIKVKVPPG-VSTGS---ILRV 313 (446)
Q Consensus 239 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~-~C~~C~G~G~v~~~~~l~V~Ip~G-~~~G~---~i~l 313 (446)
.-.|..|+....+ .+. .+.+..-..|+.|+++|..... .|. -.+..+++|+=.|. +..|+ .+.+
T Consensus 134 ~f~C~~C~~~~~v---~~~-~~~~~~P~~Cp~C~~~~f~l~~~~s~-------f~D~Q~ikiQE~pe~vp~G~~Prsi~V 202 (279)
T 1ltl_A 134 VFECRGCMRHHAV---TQS-TNMITEPSLCSECGGRSFRLLQDESE-------FLDTQTLKLQEPLENLSGGEQPRQITV 202 (279)
T ss_dssp EEEETTTCCEEEE---ECS-SSSCCCCSCCTTTCCCCEEECGGGCE-------EEEEEEEEEECCSTTCCSSCCCCEEEE
T ss_pred EEEcCCCCCEEEE---Eec-CCcccCCCcCCCCCCCCcEEeccccE-------EEeeEEEEEecCcccCCCCCCCeEEEE
Confidence 4579999854322 222 2334444689999999854432 222 23345566643222 33333 2222
Q ss_pred ccCCCCCCCCCCCccEEEEEEEE
Q 013277 314 VGEGDAGPRGGPPGDLYVYLDVE 336 (446)
Q Consensus 314 ~g~G~~~~~g~~~GDL~v~i~v~ 336 (446)
.=.++- .+...|||-+...=+-
T Consensus 203 ~l~~dL-vd~~~PGDrV~vtGI~ 224 (279)
T 1ltl_A 203 VLEDDL-VDTLTPGDIVRVTGTL 224 (279)
T ss_dssp EEEGGG-TTCCCTTCEEEEEEEE
T ss_pred EEcccc-cCccCCCCEEEEEEEE
Confidence 223322 2345688887755444
No 60
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=41.78 E-value=45 Score=24.64 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH--HHhhcch-hhhhhhhhhcc
Q 013277 88 SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISA--AYEVLSD-DKKRAMYDQYG 142 (446)
Q Consensus 88 ~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~--Ay~vL~d-~~~r~~yd~~g 142 (446)
-++.+|.+++|++|...++-+ +.-.-.+....|.. -|.+|.+ ..++++|+.|-
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~--~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVP--SNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCC--TTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcC--CCCCHHHHHHHHccCccccccCCHHHHHHHHHHHH
Confidence 358999999999999887543 33233333344433 4888876 56667888774
No 61
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=39.96 E-value=1.4e+02 Score=27.46 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=41.6
Q ss_pred eeeC--CCCCCccEEEEee--eCCceeeeeeecCCCCCCcc-eEec-eeeeecCCceEEEEeeEEEE-----EeCCCCCC
Q 013277 239 MRIC--STCGGRGQVMRTD--QTPFGLFSQVSVCPSCGGEG-EVIS-EYCRKCSGEGRIRLKKNIKV-----KVPPGVST 307 (446)
Q Consensus 239 ~~~C--~~C~G~G~~~~~~--~~~~g~~~~~~~C~~C~G~G-~~~~-~~C~~C~G~G~v~~~~~l~V-----~Ip~G~~~ 307 (446)
.-.| ..|+.. +... ....+-+.....|+.|+.+| .... +.|. -.+..+++| .+|+|--+
T Consensus 141 ~f~C~~~~C~~~---~~~~~~~~~~~~~~~P~~Cp~C~~~~~~~l~~~~s~-------f~D~Q~ikiQE~pe~vp~G~~P 210 (268)
T 2vl6_A 141 TYKHIHPDCMQE---FEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTK-------LIDWQKAVIQERPEEVPSGQLP 210 (268)
T ss_dssp EEEEECTTCCCE---EESSTTSCCCTTCCCCSBCTTTCCBCEEEECGGGCE-------EEEEEEEEEECCGGGSCTTSCC
T ss_pred EEECCCCCCCCE---EeeeecccCCCcccCCccCCCCCCCCCEEEecCccE-------EEeeEEEEEEeCCCCCCCCCCC
Confidence 4579 889742 2222 01123344447899999887 3322 2221 233445555 34455444
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEE
Q 013277 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVE 336 (446)
Q Consensus 308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~ 336 (446)
-+ +.+.=.++- .+...|||-+...=+-
T Consensus 211 rs-i~v~l~~dL-vd~~~PGDrV~vtGI~ 237 (268)
T 2vl6_A 211 RQ-LEIILEDDL-VDSARPGDRVKVTGIL 237 (268)
T ss_dssp CE-EEEEEEGGG-TTSSCTTCEEEEEEEE
T ss_pred cE-EEEEEccCc-cCcccCCCEEEEEEEE
Confidence 32 222222322 2345688887755443
No 62
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=32.84 E-value=33 Score=34.21 Aligned_cols=76 Identities=18% Similarity=0.372 Sum_probs=40.7
Q ss_pred eeeCCCCCCccEEEEe-eeCC-cee-eeeeecCCCCCCcceEece----------eeeec------------CCceEEEE
Q 013277 239 MRICSTCGGRGQVMRT-DQTP-FGL-FSQVSVCPSCGGEGEVISE----------YCRKC------------SGEGRIRL 293 (446)
Q Consensus 239 ~~~C~~C~G~G~~~~~-~~~~-~g~-~~~~~~C~~C~G~G~~~~~----------~C~~C------------~G~G~v~~ 293 (446)
...|+.|+..|..... ..+| |+= +.+...|+.|+=+-.-+.. .-.++ +-.+.+ .
T Consensus 12 ~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~pkG~r~tL~V~~~~DLnr~VvKS~tati-~ 90 (404)
T 2qkd_A 12 ESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTVRSQEDMNREVVKTDSATT-R 90 (404)
T ss_dssp EEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCSSEEEEEEEECSHHHHTCEEEECTTCEE-E
T ss_pred cccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCCCcEEEEEEECChhcccceEEEcCCcEE-E
Confidence 5678888877764322 2333 332 2344789999866332211 11111 111111 1
Q ss_pred eeEEEEEeCCCCCCCCEEEEcc
Q 013277 294 KKNIKVKVPPGVSTGSILRVVG 315 (446)
Q Consensus 294 ~~~l~V~Ip~G~~~G~~i~l~g 315 (446)
--.|.+.||||...|..-.++|
T Consensus 91 IPEL~~eI~pg~~~G~iTTVEG 112 (404)
T 2qkd_A 91 IPELDFEIPAFSQKGALTTVEG 112 (404)
T ss_dssp EGGGTEEECTTSSCCEEEEHHH
T ss_pred eeeeeEEecCccCCceEEeHHH
Confidence 2346678899998887777765
No 63
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=31.43 E-value=59 Score=24.35 Aligned_cols=53 Identities=15% Similarity=0.393 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHhhcch-hhhhhhhhhcc
Q 013277 89 ASGKEIKAAYRKLARQYHPDVNKE---PGATEKFKEISAAYEVLSD-DKKRAMYDQYG 142 (446)
Q Consensus 89 as~~eIk~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d-~~~r~~yd~~g 142 (446)
.-...++.+|+.+.+...|..... ..+..+|..-. +|..+.+ ..++.+|+.|-
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi 62 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFM 62 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHH
Confidence 345778899999888887877654 24555665544 7888865 67778999885
No 64
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=31.14 E-value=1.6e+02 Score=22.20 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=37.5
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhc
Q 013277 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141 (446)
Q Consensus 77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 141 (446)
.+.|-++ .+.+|...+.-||+. ...+.-+.|.+.|.-|++.++....|..
T Consensus 25 ~say~lF-----------~~~~r~~~k~~~P~~----~~~eisk~lg~~Wk~ls~eeK~~Y~~~A 74 (90)
T 1wgf_A 25 VSAMFIF-----------SEEKRRQLQEERPEL----SESELTRLLARMWNDLSEKKKAKYKARE 74 (90)
T ss_dssp CCHHHHH-----------HHHTHHHHHHHCTTS----CHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHH-----------HHHHHHHHHHHCCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4666666 455677777789985 3567888999999999998887666654
No 65
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=28.75 E-value=51 Score=32.88 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=13.5
Q ss_pred EEEEeCCCCCCCCEEEEcc
Q 013277 297 IKVKVPPGVSTGSILRVVG 315 (446)
Q Consensus 297 l~V~Ip~G~~~G~~i~l~g 315 (446)
|.+.||||...|..-.++|
T Consensus 302 L~lei~pg~~~G~~TTVEG 320 (404)
T 2qkd_A 302 LEFELGMAVLGGKFTTLEG 320 (404)
T ss_dssp GTEEECTTTTCSEEEEHHH
T ss_pred eeEEecCCCCCceEEeHHH
Confidence 5567778877777766665
No 66
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.39 E-value=78 Score=22.54 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchHHHHHHH-H--HHHhhcch-hh-hhhhhhhcc
Q 013277 92 KEIKAAYRKLARQYHPDVNKEPGATEKFKEI-S--AAYEVLSD-DK-KRAMYDQYG 142 (446)
Q Consensus 92 ~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i-~--~Ay~vL~d-~~-~r~~yd~~g 142 (446)
+|..+||.+|.+...=|. +-.-++..+.| . --|.+|.| |. ++++|+.|-
T Consensus 3 eEae~aF~~lL~~~~V~s--~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~ 56 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDS--TWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL 56 (59)
T ss_dssp THHHHHHHHHHHHTTCCS--SCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCC--CCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHH
Confidence 578899999988765443 23445666666 3 36999997 65 667888874
No 67
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.71 E-value=1.3e+02 Score=22.55 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhc
Q 013277 95 KAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141 (446)
Q Consensus 95 k~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 141 (446)
-+.+|...+.-||+.. ...+.-+.+.+.|..|++.++....|..
T Consensus 17 ~~e~R~~ik~~~P~~~---~~~eisK~lge~Wk~ls~eeK~~y~~~A 60 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS---DEADIIKEGMIRFRVLSTEERKVWANKA 60 (81)
T ss_dssp HHHHHHHHHHHCTTCC---SHHHHHHHHHHHHSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777888899974 3578889999999999998887766554
No 68
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=21.95 E-value=1.3e+02 Score=21.19 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277 95 KAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (446)
Q Consensus 95 k~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 140 (446)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....|.
T Consensus 14 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4566777777888864 56788889999999998887765554
No 69
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=21.69 E-value=37 Score=25.90 Aligned_cols=53 Identities=15% Similarity=0.315 Sum_probs=26.6
Q ss_pred eeecccccCCccccCc--ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEe
Q 013277 222 LETCEVCTGTGAKMGS--KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI 278 (446)
Q Consensus 222 ~~~C~~C~G~G~~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 278 (446)
.+.|..|+..|-.... ....|-.|...|.+.+.-..+ .....|-.|+..|..-
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p----~~~~~CYnCG~~GH~~ 59 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLP----FHTIYCYNCGGKGHFG 59 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGGTCCCCBC-----------------CCCBCSSSSCBSSCG
T ss_pred cCCCCCCCCCCCccccCCCcccccccccCCcccccccCC----CCCCeecccCCCCcCc
Confidence 4569999888865332 133577888887754322111 1236799999999754
No 70
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=21.03 E-value=61 Score=23.19 Aligned_cols=10 Identities=40% Similarity=1.189 Sum_probs=5.4
Q ss_pred ecCCCCCCcc
Q 013277 266 SVCPSCGGEG 275 (446)
Q Consensus 266 ~~C~~C~G~G 275 (446)
..|+.|++.-
T Consensus 18 ~~CP~CG~~t 27 (60)
T 2aus_D 18 ETCPVCGEKT 27 (60)
T ss_dssp SBCTTTCSBC
T ss_pred ccCcCCCCcc
Confidence 4566665543
No 71
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.98 E-value=1.7e+02 Score=22.06 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH--HHhhcchhhhhhhhhhccc
Q 013277 88 SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISA--AYEVLSDDKKRAMYDQYGE 143 (446)
Q Consensus 88 ~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~--Ay~vL~d~~~r~~yd~~g~ 143 (446)
.++.+|-+++|+.|.+.++-+ +.-.-......|.. -|.+|....++++|+.|-.
T Consensus 13 ~~t~eea~~~Fk~LL~e~~V~--p~~tWe~~~~~i~~DpRY~aL~~~eRK~~F~~y~~ 68 (82)
T 2dod_A 13 IVPLEARMKQFKDMLLERGVS--AFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVK 68 (82)
T ss_dssp SCCHHHHHHHHHHHHHHTTCC--SSSCHHHHHHHHHTCSGGGTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCcC--CCCCHHHHHHHHccCCccccCCHHHHHHHHHHHHH
Confidence 348899999999999987644 33334444455544 3888887778889998853
No 72
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=20.81 E-value=1.4e+02 Score=24.60 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=31.8
Q ss_pred EEEeCCCCCCCcEEEEccCCCCCCCC--------CCCCCCEEEEEEEEcCCC
Q 013277 375 ELQVPPGTQPGDVLVLAKKGAPKLNK--------PSIRGDHLFTVKVTIPNR 418 (446)
Q Consensus 375 ~l~i~~~~~~g~~~~l~g~G~P~~~~--------~~~~GdL~v~~~v~~P~~ 418 (446)
.-.||.+.++|+.++|.|.=.+..++ .....|+.++|++.|.++
T Consensus 9 ~~~i~~gl~~G~~i~I~G~v~~~a~rF~Inl~~g~~~~~dialHfnpRf~~~ 60 (138)
T 3zxf_A 9 KSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTS 60 (138)
T ss_dssp EEECTTCCCSSEEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEETTTT
T ss_pred EeecCCCCCCCCEEEEEEEECCCCCEEEEEeeeCCCCCCCEEEEEEEEcCCC
Confidence 45788889999999999864333221 113469999999999763
No 73
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=20.77 E-value=48 Score=23.72 Aligned_cols=9 Identities=44% Similarity=1.516 Sum_probs=4.8
Q ss_pred ecCCCCCCc
Q 013277 266 SVCPSCGGE 274 (446)
Q Consensus 266 ~~C~~C~G~ 274 (446)
..|+.|++.
T Consensus 19 ~~CP~CG~~ 27 (60)
T 2apo_B 19 EICPKCGEK 27 (60)
T ss_dssp SBCSSSCSB
T ss_pred ccCcCCCCc
Confidence 455555544
Done!