Query 013278
Match_columns 446
No_of_seqs 202 out of 1953
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:13:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.6 1.4E-16 3.1E-21 146.6 -1.3 272 29-382 97-397 (419)
2 KOG4341 F-box protein containi 99.4 2E-14 4.3E-19 138.2 -1.8 330 32-438 74-434 (483)
3 PLN00113 leucine-rich repeat r 99.0 2.8E-10 6E-15 128.0 6.0 157 206-383 183-343 (968)
4 PF08387 FBD: FBD; InterPro: 99.0 4.9E-10 1.1E-14 78.0 4.2 48 389-439 1-51 (51)
5 PLN00113 leucine-rich repeat r 99.0 3.4E-10 7.4E-15 127.3 4.5 253 104-383 95-367 (968)
6 PF12937 F-box-like: F-box-lik 98.7 1.7E-08 3.6E-13 69.2 3.5 35 30-64 1-35 (47)
7 KOG4194 Membrane glycoprotein 98.6 1E-08 2.2E-13 103.0 1.4 161 104-292 151-327 (873)
8 KOG4194 Membrane glycoprotein 98.6 1.2E-08 2.7E-13 102.4 1.0 218 120-383 99-328 (873)
9 PF00646 F-box: F-box domain; 98.2 3.7E-07 8.1E-12 62.7 1.3 38 30-67 3-40 (48)
10 smart00579 FBD domain in FBox 98.2 1.5E-06 3.3E-11 65.3 4.2 44 401-444 1-47 (72)
11 KOG1909 Ran GTPase-activating 98.2 1.4E-06 3E-11 83.0 4.4 150 206-383 115-281 (382)
12 smart00256 FBOX A Receptor for 98.1 2.1E-06 4.6E-11 56.6 3.1 34 33-66 1-34 (41)
13 PLN03210 Resistant to P. syrin 98.1 3.5E-06 7.6E-11 96.3 6.5 58 114-177 579-643 (1153)
14 cd00116 LRR_RI Leucine-rich re 98.0 8.8E-07 1.9E-11 86.5 -0.4 218 206-439 76-316 (319)
15 PLN03210 Resistant to P. syrin 98.0 1.1E-05 2.3E-10 92.3 6.7 101 210-324 777-878 (1153)
16 KOG3207 Beta-tubulin folding c 97.9 2.6E-06 5.7E-11 83.3 0.4 161 104-292 123-311 (505)
17 cd00116 LRR_RI Leucine-rich re 97.9 1.4E-06 3.1E-11 84.9 -1.8 74 308-383 214-289 (319)
18 PRK15387 E3 ubiquitin-protein 97.9 2.2E-05 4.8E-10 84.6 6.4 62 106-177 205-271 (788)
19 PRK15370 E3 ubiquitin-protein 97.7 3.1E-05 6.6E-10 83.8 4.6 100 261-383 325-426 (754)
20 KOG3207 Beta-tubulin folding c 97.6 1.7E-06 3.6E-11 84.7 -5.6 208 121-383 119-337 (505)
21 PF14580 LRR_9: Leucine-rich r 97.6 2.3E-06 5E-11 75.8 -4.6 100 122-246 18-125 (175)
22 KOG4341 F-box protein containi 97.5 6.6E-05 1.4E-09 73.4 3.0 72 308-383 365-437 (483)
23 PF14580 LRR_9: Leucine-rich r 97.5 2.3E-05 5E-10 69.4 -0.2 116 104-243 21-149 (175)
24 PRK15387 E3 ubiquitin-protein 97.4 0.00018 4E-09 77.7 5.5 204 104-383 224-433 (788)
25 KOG0618 Serine/threonine phosp 97.3 4.5E-06 9.8E-11 88.5 -7.5 149 210-382 358-510 (1081)
26 KOG2120 SCF ubiquitin ligase, 97.3 3.1E-06 6.6E-11 79.1 -7.9 168 194-383 200-374 (419)
27 KOG0472 Leucine-rich repeat pr 97.2 1E-05 2.2E-10 78.6 -6.3 115 104-245 185-308 (565)
28 KOG1909 Ran GTPase-activating 97.2 0.00016 3.5E-09 69.2 1.5 147 206-380 87-249 (382)
29 KOG0444 Cytoskeletal regulator 97.1 7.1E-06 1.5E-10 83.6 -8.3 62 311-383 312-373 (1255)
30 KOG0444 Cytoskeletal regulator 97.1 8.9E-06 1.9E-10 82.9 -8.1 60 112-177 92-159 (1255)
31 KOG0617 Ras suppressor protein 97.0 2E-05 4.3E-10 68.2 -5.9 101 119-246 29-139 (264)
32 KOG0618 Serine/threonine phosp 96.9 8.2E-05 1.8E-09 79.2 -3.5 119 123-272 359-487 (1081)
33 PRK15370 E3 ubiquitin-protein 96.8 0.00077 1.7E-08 73.1 3.4 65 104-177 222-292 (754)
34 KOG2982 Uncharacterized conser 96.8 0.00088 1.9E-08 63.0 3.1 200 206-427 92-307 (418)
35 KOG3665 ZYG-1-like serine/thre 96.7 0.00059 1.3E-08 73.3 0.8 153 211-380 122-283 (699)
36 KOG4237 Extracellular matrix p 96.5 0.0003 6.6E-09 68.4 -2.5 98 259-371 272-374 (498)
37 COG5238 RNA1 Ran GTPase-activa 96.4 0.003 6.4E-08 58.8 3.3 170 206-383 87-283 (388)
38 KOG3665 ZYG-1-like serine/thre 96.3 0.0018 4E-08 69.5 1.9 116 306-437 164-282 (699)
39 PF13855 LRR_8: Leucine rich r 96.1 0.0032 6.9E-08 45.3 1.8 57 123-222 1-60 (61)
40 KOG1259 Nischarin, modulator o 95.7 0.0043 9.4E-08 58.5 1.4 103 260-383 306-410 (490)
41 PF07723 LRR_2: Leucine Rich R 95.4 0.017 3.8E-07 33.7 2.6 14 151-164 1-14 (26)
42 KOG0617 Ras suppressor protein 95.1 0.00094 2E-08 58.0 -4.7 47 112-164 68-116 (264)
43 KOG1644 U2-associated snRNP A' 94.9 0.046 1E-06 48.9 5.0 36 123-164 42-78 (233)
44 KOG2123 Uncharacterized conser 94.8 0.0024 5.1E-08 59.6 -3.4 102 262-381 20-126 (388)
45 KOG2982 Uncharacterized conser 94.7 0.013 2.8E-07 55.4 1.2 71 304-383 86-157 (418)
46 KOG0472 Leucine-rich repeat pr 94.2 0.0016 3.4E-08 63.7 -6.2 132 112-273 149-309 (565)
47 PF12799 LRR_4: Leucine Rich r 94.2 0.05 1.1E-06 36.3 2.9 36 123-164 1-38 (44)
48 PF12799 LRR_4: Leucine Rich r 94.2 0.026 5.7E-07 37.7 1.4 20 206-225 19-38 (44)
49 PF13855 LRR_8: Leucine rich r 94.1 0.055 1.2E-06 38.7 3.1 52 104-161 3-60 (61)
50 PLN03150 hypothetical protein; 94.1 0.036 7.8E-07 59.5 3.1 42 206-247 461-503 (623)
51 KOG1947 Leucine rich repeat pr 94.0 0.0046 1E-07 63.7 -3.9 125 122-270 187-330 (482)
52 PLN03150 hypothetical protein; 93.9 0.034 7.3E-07 59.7 2.5 76 125-225 420-504 (623)
53 KOG0281 Beta-TrCP (transducin 93.9 0.024 5.2E-07 54.2 1.1 38 26-63 71-112 (499)
54 KOG2739 Leucine-rich acidic nu 93.8 0.0081 1.8E-07 55.6 -2.2 66 206-271 86-153 (260)
55 KOG1947 Leucine rich repeat pr 93.6 0.015 3.3E-07 59.8 -0.9 40 27-66 42-81 (482)
56 PLN03215 ascorbic acid mannose 93.2 0.064 1.4E-06 53.1 2.8 38 29-66 3-41 (373)
57 KOG1259 Nischarin, modulator o 92.6 0.022 4.7E-07 53.9 -1.3 16 259-274 397-412 (490)
58 KOG2739 Leucine-rich acidic nu 91.8 0.036 7.8E-07 51.4 -0.9 109 206-322 38-150 (260)
59 KOG1859 Leucine-rich repeat pr 91.7 0.011 2.4E-07 62.1 -4.7 78 209-291 185-263 (1096)
60 KOG2997 F-box protein FBX9 [Ge 91.3 0.14 3E-06 48.8 2.4 38 26-63 103-145 (366)
61 KOG4658 Apoptotic ATPase [Sign 91.3 0.032 7E-07 61.8 -2.0 15 369-383 767-781 (889)
62 COG4886 Leucine-rich repeat (L 90.4 0.078 1.7E-06 53.4 -0.1 165 148-355 114-287 (394)
63 COG4886 Leucine-rich repeat (L 89.7 0.16 3.5E-06 51.2 1.5 164 122-326 115-288 (394)
64 KOG1644 U2-associated snRNP A' 88.9 0.49 1.1E-05 42.6 3.7 62 121-224 62-126 (233)
65 PRK15386 type III secretion pr 87.2 1.3 2.7E-05 44.7 5.9 11 150-160 94-104 (426)
66 KOG2123 Uncharacterized conser 86.8 0.075 1.6E-06 49.9 -2.7 36 123-164 19-55 (388)
67 KOG4237 Extracellular matrix p 86.2 0.34 7.3E-06 47.8 1.2 82 146-246 270-358 (498)
68 PF13013 F-box-like_2: F-box-l 85.0 0.68 1.5E-05 37.4 2.3 39 29-67 21-63 (109)
69 KOG1859 Leucine-rich repeat pr 84.4 0.28 6.1E-06 52.0 -0.2 94 77-177 141-263 (1096)
70 PRK15386 type III secretion pr 84.4 2 4.4E-05 43.3 5.7 30 122-160 51-82 (426)
71 KOG4658 Apoptotic ATPase [Sign 84.2 0.12 2.7E-06 57.3 -3.1 51 122-177 570-627 (889)
72 KOG0274 Cdc4 and related F-box 80.3 0.87 1.9E-05 47.8 1.5 40 24-63 102-141 (537)
73 KOG3864 Uncharacterized conser 71.6 0.96 2.1E-05 40.7 -0.8 13 33-45 14-26 (221)
74 KOG0531 Protein phosphatase 1, 68.7 2.3 5.1E-05 43.2 1.2 40 119-164 91-132 (414)
75 COG5238 RNA1 Ran GTPase-activa 66.9 5.2 0.00011 37.9 2.9 145 232-382 90-252 (388)
76 PF13504 LRR_7: Leucine rich r 66.8 3.9 8.5E-05 21.1 1.2 13 151-163 2-14 (17)
77 KOG0531 Protein phosphatase 1, 65.6 2.6 5.6E-05 42.8 0.8 79 119-223 114-198 (414)
78 KOG3864 Uncharacterized conser 61.2 2.8 6.1E-05 37.8 0.1 40 121-161 123-162 (221)
79 smart00367 LRR_CC Leucine-rich 60.7 3.8 8.2E-05 23.6 0.6 13 210-222 1-13 (26)
80 PF09372 PRANC: PRANC domain; 50.6 12 0.00027 29.3 2.2 25 28-52 70-94 (97)
81 PF13516 LRR_6: Leucine Rich r 48.5 9.1 0.0002 21.3 0.8 15 150-164 2-16 (24)
82 KOG0532 Leucine-rich repeat (L 46.0 4.3 9.4E-05 42.2 -1.3 44 114-163 112-156 (722)
83 PF00560 LRR_1: Leucine Rich R 36.3 26 0.00056 19.1 1.4 14 151-164 1-14 (22)
84 smart00370 LRR Leucine-rich re 26.7 39 0.00085 19.0 1.1 16 149-164 1-16 (26)
85 smart00369 LRR_TYP Leucine-ric 26.7 39 0.00085 19.0 1.1 16 149-164 1-16 (26)
86 smart00368 LRR_RI Leucine rich 25.5 39 0.00086 19.7 1.0 15 150-164 2-16 (28)
87 KOG4408 Putative Mg2+ and Co2+ 25.3 20 0.00043 34.8 -0.5 39 30-68 8-46 (386)
88 KOG0532 Leucine-rich repeat (L 22.7 27 0.00058 36.7 -0.2 106 112-246 133-246 (722)
89 PF08004 DUF1699: Protein of u 22.1 1.1E+02 0.0024 25.3 3.3 34 346-382 18-51 (131)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.4e-16 Score=146.63 Aligned_cols=272 Identities=19% Similarity=0.201 Sum_probs=168.2
Q ss_pred CCCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhh------hcccceEEEecCCcchHHHHHHHhccCCC------Ccc-
Q 013278 29 RLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYL------WLSIPYLNFNVHNICSNPLERWSLQTTNE------KFK- 95 (446)
Q Consensus 29 ~is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~l------w~~~p~l~~~~~~~~~~~v~~~L~~~~~~------~f~- 95 (446)
.+..|||||+..||+.|+-+|+.+++.|||||+++ |... ++.... ....+-..+.+++.- .|.
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r~-i~p~~l~~l~~rgV~v~Rlar~~~~ 172 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGRN-IHPDVLGRLLSRGVIVFRLARSFMD 172 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCCc-cChhHHHHHHhCCeEEEEcchhhhc
Confidence 37789999999999999999999999999999986 5542 222221 111222222222221 121
Q ss_pred -----cHHHHHHh-hceeeeEc----ccccCCCccCCCCceEEEeccccccccccccCCCc---ccCCCccEEEeeceEe
Q 013278 96 -----DFVNWVLL-FQNGSVNE----PIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTC---VGFSRLKSLDLQHVES 162 (446)
Q Consensus 96 -----~i~~w~~~-l~~L~l~~----~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~p~~---~~~~~L~~L~L~~~~~ 162 (446)
....-.+. +++++++. ...+...+..|..|+.|+|.|. .+.+|.. +.=.+|+.|+|+.+.-
T Consensus 173 ~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~------~LdD~I~~~iAkN~~L~~lnlsm~sG 246 (419)
T KOG2120|consen 173 QPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL------RLDDPIVNTIAKNSNLVRLNLSMCSG 246 (419)
T ss_pred CchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc------ccCcHHHHHHhccccceeeccccccc
Confidence 11111111 77777765 3334444556888999999988 7777532 3446889999988764
Q ss_pred cCccccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCc-ceEEEe--ccccceE
Q 013278 163 LDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDL-KILDIS--SNSLKSL 239 (446)
Q Consensus 163 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~-~~l~i~--~~~Lr~L 239 (446)
.+ + .++.- ++++|..|.+|.|..|..... ....+. +++|+.|
T Consensus 247 ~t------------~----------------n~~~l-------l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 247 FT------------E----------------NALQL-------LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred cc------------h----------------hHHHH-------HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 43 2 66777 899999999999999974321 112222 4789999
Q ss_pred EEeeeecCCCCCCCceEEEecCceeeEEEecCCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccE
Q 013278 240 TLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKV 319 (446)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 319 (446)
.+++|+..-....+..+...+|+|..|+++++..- .......+-.++.+++
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l-----------------------------~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML-----------------------------KNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeecccccccc-----------------------------CchHHHHHHhcchhee
Confidence 99988753212233444556788888888776432 1122445556777777
Q ss_pred EEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEec
Q 013278 320 LKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFD 382 (446)
Q Consensus 320 L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~ 382 (446)
|.++-++.-.- .....+...+.|..|++..+..+.. +.-+.+.||+|+.-.-...
T Consensus 343 lSlsRCY~i~p-----~~~~~l~s~psl~yLdv~g~vsdt~---mel~~e~~~~lkin~q~~~ 397 (419)
T KOG2120|consen 343 LSLSRCYDIIP-----ETLLELNSKPSLVYLDVFGCVSDTT---MELLKEMLSHLKINCQHFN 397 (419)
T ss_pred eehhhhcCCCh-----HHeeeeccCcceEEEEeccccCchH---HHHHHHhCccccccceeee
Confidence 77765432100 0112244667788888876544432 2556778898876544443
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.40 E-value=2e-14 Score=138.17 Aligned_cols=330 Identities=18% Similarity=0.219 Sum_probs=164.0
Q ss_pred CCCHHHHHHHhcCCChHHHHhhhhcchhhhhh------hcccceEEEecCCcchHHHHHHHhccCCCCcccHHHHHHhhc
Q 013278 32 NLPEPIIHHIFSFLETIDVVRASAVSRKWRYL------WLSIPYLNFNVHNICSNPLERWSLQTTNEKFKDFVNWVLLFQ 105 (446)
Q Consensus 32 ~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~l------w~~~p~l~~~~~~~~~~~v~~~L~~~~~~~f~~i~~w~~~l~ 105 (446)
.||.|++.+|||+|+++...|++.+|+.|..+ |.++...+|..+. -...|..++.+.++. ++
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv-~g~VV~~~~~Rcgg~-----------lk 141 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV-DGGVVENMISRCGGF-----------LK 141 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC-CCcceehHhhhhccc-----------cc
Confidence 59999999999999999999999999999876 8887766664432 122233333222221 34
Q ss_pred eeeeEc-----ccccCCCccCCCCceEEEeccccccccccccCC----CcccCCCccEEEeeceEecC--------cccc
Q 013278 106 NGSVNE-----PIKLPRSLVTCESLVSLKLDFGNREHQGVLNLP----TCVGFSRLKSLDLQHVESLD--------ISTT 168 (446)
Q Consensus 106 ~L~l~~-----~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~p----~~~~~~~L~~L~L~~~~~~~--------~~~~ 168 (446)
+|++.. ...+-.....|+++++|.+.+|. .+.+. ....++.|+.|+|..|..-+ .+|+
T Consensus 142 ~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-----~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 142 ELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-----KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccCCcchhhHHhhhCCchhhhhhhcce-----eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 444443 11111112235666666666652 11111 11245555555555533222 1333
Q ss_pred ccccccchhhcccCcccCccchhhh-hhHHHhhhccccccccCcccccccccccccCCcceEE-E--eccccceEEEeee
Q 013278 169 SLKYLTVDEFLLSEPKGLRSCKVIC-ESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILD-I--SSNSLKSLTLERI 244 (446)
Q Consensus 169 ~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~-i--~~~~Lr~L~l~~~ 244 (446)
+|++|+++- |++|. .+++. +..+|..|+.+.+++|...+...+. + ..+-+..+++..|
T Consensus 217 kL~~lNlSw-----------c~qi~~~gv~~-------~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c 278 (483)
T KOG4341|consen 217 KLKYLNLSW-----------CPQISGNGVQA-------LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC 278 (483)
T ss_pred hHHHhhhcc-----------CchhhcCcchH-------HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhh
Confidence 444433322 23322 23333 4444444444444444322211111 0 1122233333333
Q ss_pred ecCCCCCCCceEEEecCceeeEEEecCCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEec
Q 013278 245 EFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSC 324 (446)
Q Consensus 245 ~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 324 (446)
...+ +.+...+.-.+-.|+.+.++++.. .. ...+..+-..+++|+.|.++.
T Consensus 279 ~~lT-D~~~~~i~~~c~~lq~l~~s~~t~-----------------------~~-----d~~l~aLg~~~~~L~~l~l~~ 329 (483)
T KOG4341|consen 279 NQLT-DEDLWLIACGCHALQVLCYSSCTD-----------------------IT-----DEVLWALGQHCHNLQVLELSG 329 (483)
T ss_pred cccc-chHHHHHhhhhhHhhhhcccCCCC-----------------------Cc-----hHHHHHHhcCCCceEEEeccc
Confidence 2222 111122222233333333333211 00 122366667889999999887
Q ss_pred hhHHHHHHHhhhcccCCC-ccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC---CCCCCCCCCCCCccccc
Q 013278 325 TLYQFLNAILEQRSYFSA-SFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS---DEYYDDWEIPDKVILCL 400 (446)
Q Consensus 325 ~~~~~~~~~~~~~~~~~p-~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~---~~~~~~w~~~~~~~~~~ 400 (446)
... + .+.....+. ..+.|+.|.+..+....+. .+..+-.+||.|++|.++... |.+.. .....
T Consensus 330 c~~-f----sd~~ft~l~rn~~~Le~l~~e~~~~~~d~-tL~sls~~C~~lr~lslshce~itD~gi~-------~l~~~ 396 (483)
T KOG4341|consen 330 CQQ-F----SDRGFTMLGRNCPHLERLDLEECGLITDG-TLASLSRNCPRLRVLSLSHCELITDEGIR-------HLSSS 396 (483)
T ss_pred cch-h----hhhhhhhhhcCChhhhhhcccccceehhh-hHhhhccCCchhccCChhhhhhhhhhhhh-------hhhhc
Confidence 542 1 112222244 6778999999887766554 458899999999999998433 21110 01222
Q ss_pred cccccceeEEecCCCHhHHHHHHHHHhcCccccceEEE
Q 013278 401 TCHLKTVELIDFSGNENELELVRFLLKNGHVLQKLRVS 438 (446)
Q Consensus 401 ~c~~~~L~~v~f~g~~~e~~~~~~ll~~a~~L~~~~i~ 438 (446)
.|.+.+|++........-.+-+-..+.+++.||++.+.
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 45555666664443333223333345566677765443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.01 E-value=2.8e-10 Score=128.04 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=69.5
Q ss_pred ccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCc---eeecCC
Q 013278 206 EIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPD---FTLESL 281 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~l~~~ 281 (446)
.+..+++|++|+|.+|...+...-.+. .++|+.|.+.+|...+ .........++|++|++.++.... ..+.++
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG---EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC---cCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 344555566666655543322111122 2455556555554422 111112334556666655543221 123455
Q ss_pred CCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccH
Q 013278 282 NSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTV 361 (446)
Q Consensus 282 p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~ 361 (446)
++|+.+.+...... ......+..+++++.|.++.+.+.. ..+..+..+++|+.|++..+.....
T Consensus 260 ~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~l~~n~~~~~- 323 (968)
T PLN00113 260 KNLQYLFLYQNKLS---------GPIPPSIFSLQKLISLDLSDNSLSG------EIPELVIQLQNLEILHLFSNNFTGK- 323 (968)
T ss_pred CCCCEEECcCCeee---------ccCchhHhhccCcCEEECcCCeecc------CCChhHcCCCCCcEEECCCCccCCc-
Confidence 55555555432100 0112233455666666665543321 1111233455666666654322211
Q ss_pred HhHHHHhhcCCCCcEEEEEecC
Q 013278 362 PLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 362 l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
. +..+..+|+|+.|.+....
T Consensus 324 ~--~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 324 I--PVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred C--ChhHhcCCCCCEEECcCCC
Confidence 1 3445566777777665443
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=98.99 E-value=4.9e-10 Score=77.99 Aligned_cols=48 Identities=35% Similarity=0.728 Sum_probs=44.1
Q ss_pred CCCCCCCccccccccccceeEE---ecCCCHhHHHHHHHHHhcCccccceEEEc
Q 013278 389 DWEIPDKVILCLTCHLKTVELI---DFSGNENELELVRFLLKNGHVLQKLRVSW 439 (446)
Q Consensus 389 ~w~~~~~~~~~~~c~~~~L~~v---~f~g~~~e~~~~~~ll~~a~~L~~~~i~~ 439 (446)
.|.++ ..+++|+.+||+.| +|.|.+.|++|++||++||++||+|+|..
T Consensus 1 ~W~~~---~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 1 FWIEP---SSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred CCCCC---CCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 38666 78899999999999 99999999999999999999999999963
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.97 E-value=3.4e-10 Score=127.30 Aligned_cols=253 Identities=19% Similarity=0.153 Sum_probs=145.5
Q ss_pred hceeeeEc---ccccCCCcc-CCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC------cccccccc
Q 013278 104 FQNGSVNE---PIKLPRSLV-TCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD------ISTTSLKY 172 (446)
Q Consensus 104 l~~L~l~~---~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~------~~~~~L~~ 172 (446)
++.|++.. ...+|..++ .+++|++|+|+++ .+.. .....+++|++|+|+++.+.+ +++++|++
T Consensus 95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n------~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN------NFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCEEECCCCccCCcCChHHhccCCCCCEEECcCC------ccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 56666654 235666555 5667777777766 3332 112245556666666555442 14555555
Q ss_pred ccchhhcc--cCcccCccchhh---hhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeec
Q 013278 173 LTVDEFLL--SEPKGLRSCKVI---CESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEF 246 (446)
Q Consensus 173 L~l~~~~~--~~~~~~~~~~~~---~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~ 246 (446)
|++++..+ ..|..+..++.+ +-.-..+.+.++..+..+++|+.|+|.+|...+...-.+. .++|++|++.+|..
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 55554322 122211111111 0000011122333567889999999999876543322333 37899999999876
Q ss_pred CCCCCCCceEEEecCceeeEEEecCCCCc---eeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEe
Q 013278 247 GGDELDNYKLKIACSNLESFNIFAPLLPD---FTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLS 323 (446)
Q Consensus 247 ~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 323 (446)
.+ ......-..++|++|.+.++.... ..+.++++|+.+++..+.. ...+...+..+++++.|.++
T Consensus 249 ~~---~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l---------~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 249 TG---PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL---------SGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred cc---ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee---------ccCCChhHcCCCCCcEEECC
Confidence 43 222333456889999998875432 2356778888888864321 11124556788999999998
Q ss_pred chhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 324 CTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
.+.+.. ..+..+..+++|+.|++..+...... +..+...++|+.|++....
T Consensus 317 ~n~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~---p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 317 SNNFTG------KIPVALTSLPRLQVLQLWSNKFSGEI---PKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred CCccCC------cCChhHhcCCCCCEEECcCCCCcCcC---ChHHhCCCCCcEEECCCCe
Confidence 765421 11223446788999998765433222 5567788999999997554
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.68 E-value=1.7e-08 Score=69.20 Aligned_cols=35 Identities=43% Similarity=0.835 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhhh
Q 013278 30 LSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLW 64 (446)
Q Consensus 30 is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~lw 64 (446)
|+.||+||+.+||++||.+|.++++.|||+|+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999864
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.62 E-value=1e-08 Score=103.00 Aligned_cols=161 Identities=13% Similarity=0.166 Sum_probs=78.3
Q ss_pred hceeeeEc--ccccCCCccC-CCCceEEEeccccccccccccC---CCcccCCCccEEEeeceEecCc------cccccc
Q 013278 104 FQNGSVNE--PIKLPRSLVT-CESLVSLKLDFGNREHQGVLNL---PTCVGFSRLKSLDLQHVESLDI------STTSLK 171 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~-~~~L~~L~L~~~~~~~~~~l~~---p~~~~~~~L~~L~L~~~~~~~~------~~~~L~ 171 (446)
++.++++. ...+|..-+. -.++++|+|.++ .+.. -.+.+|.+|.+|.|+.+.++.- ++|+|+
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N------~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN------RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccc------cccccccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence 66666654 3333333333 356788888877 4444 2344666777777777776662 466677
Q ss_pred cccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEE-EeccccceEEEeeeecCCCC
Q 013278 172 YLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILD-ISSNSLKSLTLERIEFGGDE 250 (446)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~-i~~~~Lr~L~l~~~~~~~~~ 250 (446)
.|+|-. +.+.-.. .. -+.+.|+|+.|.|..+....+..-. -...++++|.+..++...
T Consensus 225 ~LdLnr----------------N~irive-~l--tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-- 283 (873)
T KOG4194|consen 225 SLDLNR----------------NRIRIVE-GL--TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-- 283 (873)
T ss_pred hhhccc----------------cceeeeh-hh--hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh--
Confidence 766654 2211100 00 2345555666666555432211111 122455555555554321
Q ss_pred CCCceEEEecCceeeEEEecCCCCceee---cCCCCceEEEEEEE
Q 013278 251 LDNYKLKIACSNLESFNIFAPLLPDFTL---ESLNSLQNAFIFLE 292 (446)
Q Consensus 251 ~~~~~~~i~ap~L~~L~~~~~~~~~~~l---~~~p~L~~l~l~~~ 292 (446)
-..........|+.|+++.+.+.++.+ ..+++|++++++..
T Consensus 284 -vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 284 -VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred -hhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 011222333445555555544433333 24556666665543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.59 E-value=1.2e-08 Score=102.37 Aligned_cols=218 Identities=20% Similarity=0.214 Sum_probs=124.2
Q ss_pred cCCCCceEEEeccccccccccccC-CCccc-CCCccEEEeeceEecCc------cccccccccchhhcccCcccCccchh
Q 013278 120 VTCESLVSLKLDFGNREHQGVLNL-PTCVG-FSRLKSLDLQHVESLDI------STTSLKYLTVDEFLLSEPKGLRSCKV 191 (446)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~-~~~L~~L~L~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~ 191 (446)
++.++|+.+++..+ .+.. |.+.+ ..+|+.|+|.++.+... .+|.|++|+|+.
T Consensus 99 ~nl~nLq~v~l~~N------~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr-------------- 158 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKN------ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR-------------- 158 (873)
T ss_pred hcCCcceeeeeccc------hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh--------------
Confidence 34568888888888 6665 66554 44689999988887762 466666666665
Q ss_pred hhhhHHHhhhccccccccCcccccccccccccCCcceEEEec-cccceEEEeeeecCCCCCCCceEEEecCceeeEEEec
Q 013278 192 ICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISS-NSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFA 270 (446)
Q Consensus 192 ~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~-~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~ 270 (446)
+.+..+... -+.+-+++++|.|.++.++.+..-.+.+ .+|-.|.++.++... -.....-+.|+|+.|++.-
T Consensus 159 --N~is~i~~~---sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt---Lp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 159 --NLISEIPKP---SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT---LPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred --chhhcccCC---CCCCCCCceEEeeccccccccccccccccchheeeecccCcccc---cCHHHhhhcchhhhhhccc
Confidence 333221000 1223355677777766655443333333 466666666666532 1222333466777776666
Q ss_pred CCCC---ceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCcc
Q 013278 271 PLLP---DFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNL 347 (446)
Q Consensus 271 ~~~~---~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L 347 (446)
+.+. ...+..+++|+.+.+.-...... -...+-++..+++|.+..+.++..+ .+++-.+..|
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL---------~DG~Fy~l~kme~l~L~~N~l~~vn------~g~lfgLt~L 295 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKL---------DDGAFYGLEKMEHLNLETNRLQAVN------EGWLFGLTSL 295 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccc---------cCcceeeecccceeecccchhhhhh------cccccccchh
Confidence 5432 23456666666666643211110 1234456777788888777665432 3445567777
Q ss_pred ceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 348 KSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 348 ~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
++|+++++.... +. ..-=..||.|+.|+++.+.
T Consensus 296 ~~L~lS~NaI~r-ih--~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 296 EQLDLSYNAIQR-IH--IDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hhhccchhhhhe-ee--cchhhhcccceeEeccccc
Confidence 788887653211 00 1112358889999888765
No 9
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.24 E-value=3.7e-07 Score=62.69 Aligned_cols=38 Identities=45% Similarity=0.758 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhhhccc
Q 013278 30 LSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSI 67 (446)
Q Consensus 30 is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~lw~~~ 67 (446)
+++||+|++.+||++|+.+|.++.+.|||+|+++....
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 56899999999999999999999999999999986553
No 10
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=98.21 E-value=1.5e-06 Score=65.28 Aligned_cols=44 Identities=34% Similarity=0.617 Sum_probs=39.5
Q ss_pred cccccceeEE---ecCCCHhHHHHHHHHHhcCccccceEEEccCCCC
Q 013278 401 TCHLKTVELI---DFSGNENELELVRFLLKNGHVLQKLRVSWLERCG 444 (446)
Q Consensus 401 ~c~~~~L~~v---~f~g~~~e~~~~~~ll~~a~~L~~~~i~~~~~~~ 444 (446)
+|+.++|++| +|.|.+.|++|++|||+||+.||+|+|..++...
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~ 47 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDD 47 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCc
Confidence 3777889988 9999999999999999999999999999877543
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=1.4e-06 Score=83.01 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=79.4
Q ss_pred ccccCcccccccccccccCCc--c-----------eEEEe-ccccceEEEeeeecCCCCC-CCceEEEecCceeeEEEec
Q 013278 206 EIDSSPLLENLKMDSCCFPDL--K-----------ILDIS-SNSLKSLTLERIEFGGDEL-DNYKLKIACSNLESFNIFA 270 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~--~-----------~l~i~-~~~Lr~L~l~~~~~~~~~~-~~~~~~i~ap~L~~L~~~~ 270 (446)
++++|..|++|.|.+|-..-. . .-.+. .+.||++....|+..+... ......-..|.|+.+++..
T Consensus 115 ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q 194 (382)
T KOG1909|consen 115 LLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ 194 (382)
T ss_pred HHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEec
Confidence 888888888888888853200 0 00112 2566666666666543000 0111122335555555554
Q ss_pred CCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceE
Q 013278 271 PLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSL 350 (446)
Q Consensus 271 ~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L 350 (446)
+.+.. .+ ...+..-+..+++++.|+|..+++..-... .....+|.|++|+.|
T Consensus 195 N~I~~-----------------------eG---~~al~eal~~~~~LevLdl~DNtft~egs~--~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 195 NGIRP-----------------------EG---VTALAEALEHCPHLEVLDLRDNTFTLEGSV--ALAKALSSWPHLREL 246 (382)
T ss_pred ccccC-----------------------ch---hHHHHHHHHhCCcceeeecccchhhhHHHH--HHHHHhcccchheee
Confidence 43211 10 112355566778888888877766432111 112347777788888
Q ss_pred EEEeecCcc-cHHhHH-HHhhcCCCCcEEEEEecC
Q 013278 351 ILCVTTAEW-TVPLII-RLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 351 ~l~~~~~~~-~~l~l~-~lL~~~P~Le~L~l~~~~ 383 (446)
.+.+|.... ...++. .+-+..|+|+.|.+..+.
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 887775422 222223 333457888888876655
No 12
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.13 E-value=2.1e-06 Score=56.56 Aligned_cols=34 Identities=44% Similarity=0.681 Sum_probs=31.8
Q ss_pred CCHHHHHHHhcCCChHHHHhhhhcchhhhhhhcc
Q 013278 33 LPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLS 66 (446)
Q Consensus 33 LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~lw~~ 66 (446)
||+|++.+||++|+.+|.++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999998644
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.12 E-value=3.5e-06 Score=96.25 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=35.3
Q ss_pred ccCCCccCC-CCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC-----ccccccccccchh
Q 013278 114 KLPRSLVTC-ESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD-----ISTTSLKYLTVDE 177 (446)
Q Consensus 114 ~lp~~l~~~-~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~-----~~~~~L~~L~l~~ 177 (446)
.+|..+... .+|+.|++.++ .+.. |....+.+|++|+|.++.+.. ..+++|+.|++..
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~------~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKY------PLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643 (1153)
T ss_pred ecCcchhhcCcccEEEEecCC------CCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCC
Confidence 455554443 45777777776 3433 555566777777777765543 2466777777754
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.03 E-value=8.8e-07 Score=86.45 Aligned_cols=218 Identities=18% Similarity=0.087 Sum_probs=117.7
Q ss_pred ccccCcccccccccccccCCcceEEEe----ccccceEEEeeeecCCCCCCCceE---EEec-CceeeEEEecCCCCce-
Q 013278 206 EIDSSPLLENLKMDSCCFPDLKILDIS----SNSLKSLTLERIEFGGDELDNYKL---KIAC-SNLESFNIFAPLLPDF- 276 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~~~l~i~----~~~Lr~L~l~~~~~~~~~~~~~~~---~i~a-p~L~~L~~~~~~~~~~- 276 (446)
.+..+++|+.|++.+|.+.+.....+. +++|++|++.+|...+ .+...+ .... ++|+.|.+.++.....
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~--~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD--RGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch--HHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 345577888888887765421111111 1448888888776532 111111 1122 7788888888765411
Q ss_pred ------eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceE
Q 013278 277 ------TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSL 350 (446)
Q Consensus 277 ------~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L 350 (446)
.+..+++|+.+++....-.+ .. ...+...+..+++++.|.++.+.+..... ......++.+++|++|
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~----~~-~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~~~~~~~L~~L 226 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGD----AG-IRALAEGLKANCNLEVLDLNNNGLTDEGA--SALAETLASLKSLEVL 226 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCch----HH-HHHHHHHHHhCCCCCEEeccCCccChHHH--HHHHHHhcccCCCCEE
Confidence 23345678877775431111 01 11223445566799999998765432110 0011225577889999
Q ss_pred EEEeecCcccHHhHHHHhhc----CCCCcEEEEEecCCCCCCCCCCCCCccccccccccceeEEecCC----CHhHHHHH
Q 013278 351 ILCVTTAEWTVPLIIRLLNH----SPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHLKTVELIDFSG----NENELELV 422 (446)
Q Consensus 351 ~l~~~~~~~~~l~l~~lL~~----~P~Le~L~l~~~~~~~~~~w~~~~~~~~~~~c~~~~L~~v~f~g----~~~e~~~~ 422 (446)
++..+.... .++..+... .+.|+.|.+....-.... ...- ....+.+ .+|+.+++.+ .+....++
T Consensus 227 ~ls~n~l~~--~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~-~~~l--~~~~~~~--~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 227 NLGDNNLTD--AGAAALASALLSPNISLLTLSLSCNDITDDG-AKDL--AEVLAEK--ESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred ecCCCcCch--HHHHHHHHHHhccCCCceEEEccCCCCCcHH-HHHH--HHHHhcC--CCccEEECCCCCCcHHHHHHHH
Confidence 998754322 122333333 589999999765510000 0000 0111122 5788885554 34457788
Q ss_pred HHHHhcCccccceEEEc
Q 013278 423 RFLLKNGHVLQKLRVSW 439 (446)
Q Consensus 423 ~~ll~~a~~L~~~~i~~ 439 (446)
+-+..+.+.|+.+.|.-
T Consensus 300 ~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 300 ESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHhhcCCchhhcccCC
Confidence 88888888888877643
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.96 E-value=1.1e-05 Score=92.31 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=46.7
Q ss_pred CcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCceeecCCCCceEEE
Q 013278 210 SPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAF 288 (446)
Q Consensus 210 cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~l~~~p~L~~l~ 288 (446)
++.|+.|+|.+|.........+. .++|+.|.|.+|.... .+. ..+..++|++|.++|+..-........+|+.++
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~---~LP-~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE---TLP-TGINLESLESLDLSGCSRLRTFPDISTNISDLN 852 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC---eeC-CCCCccccCEEECCCCCccccccccccccCEeE
Confidence 45666666666642111111122 2567777776664321 010 012456677777766532111111223455555
Q ss_pred EEEEeccchhhhhHHhHHHHHHcccCCCccEEEEec
Q 013278 289 IFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSC 324 (446)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 324 (446)
+...... .+..-+..+++++.|.++.
T Consensus 853 Ls~n~i~----------~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 853 LSRTGIE----------EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCCCCCc----------cChHHHhcCCCCCEEECCC
Confidence 4322100 1133456677777777765
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.6e-06 Score=83.31 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=110.7
Q ss_pred hceeeeEc-ccccCC---CccCCCCceEEEeccccccccccccC--C---CcccCCCccEEEeeceEecC-------ccc
Q 013278 104 FQNGSVNE-PIKLPR---SLVTCESLVSLKLDFGNREHQGVLNL--P---TCVGFSRLKSLDLQHVESLD-------IST 167 (446)
Q Consensus 104 l~~L~l~~-~~~lp~---~l~~~~~L~~L~L~~~~~~~~~~l~~--p---~~~~~~~L~~L~L~~~~~~~-------~~~ 167 (446)
++++.++. ....+. -.-.|++++.|+|+.+ .+.. + ....||+|+.|+|+.+.+.. ..+
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N------L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN------LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhh------hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 77888876 333333 2335899999999988 5554 2 23479999999999987655 258
Q ss_pred cccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe---ccccceEEEeee
Q 013278 168 TSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS---SNSLKSLTLERI 244 (446)
Q Consensus 168 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~---~~~Lr~L~l~~~ 244 (446)
++||.|.+.++ |++ + ..+.. ++..||.|+.|.|..+. +...-..+ ...|+.|+++++
T Consensus 197 ~~lK~L~l~~C------Gls-~----k~V~~-------~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 197 SHLKQLVLNSC------GLS-W----KDVQW-------ILLTFPSLEVLYLEANE--IILIKATSTKILQTLQELDLSNN 256 (505)
T ss_pred hhhheEEeccC------CCC-H----HHHHH-------HHHhCCcHHHhhhhccc--ccceecchhhhhhHHhhccccCC
Confidence 88999998774 333 1 45666 78899999999999985 21112222 267999999999
Q ss_pred ecCCCCCCCceEEEecCceeeEEEecCCCCceeec---------CCCCceEEEEEEE
Q 013278 245 EFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLE---------SLNSLQNAFIFLE 292 (446)
Q Consensus 245 ~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~l~---------~~p~L~~l~l~~~ 292 (446)
.+.+ .+........|.|+.|.++.+....+.+. ..|+|+.+.+...
T Consensus 257 ~li~--~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 257 NLID--FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred cccc--cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence 8765 23334556678899988888766544333 4477777777654
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.89 E-value=1.4e-06 Score=84.91 Aligned_cols=74 Identities=16% Similarity=0.063 Sum_probs=33.4
Q ss_pred HHHcccCCCccEEEEechhHHHHHHHhhhcccCCC-ccCccceEEEEeecCc-ccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 308 SKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSA-SFNNLKSLILCVTTAE-WTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 308 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p-~f~~L~~L~l~~~~~~-~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
...+..+++++.|.++.+.+....... ....++ ....|++|.+..+... .....+...+..+++|+.+++....
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~--l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTDAGAAA--LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHhcccCCCCEEecCCCcCchHHHHH--HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 444555666666666654332110000 000011 2355666666654322 1222334555555666666665544
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.86 E-value=2.2e-05 Score=84.63 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=35.2
Q ss_pred eeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecCc--cccccccccchh
Q 013278 106 NGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLDI--STTSLKYLTVDE 177 (446)
Q Consensus 106 ~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~~--~~~~L~~L~l~~ 177 (446)
.|++.. ...+|..+. ++|+.|.+.++ .+.. |. ..++|++|+|+++.+... ..++|++|.+.+
T Consensus 205 ~LdLs~~~LtsLP~~l~--~~L~~L~L~~N------~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~ 271 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP--AHITTLVIPDN------NLTSLPA--LPPELRTLEVSGNQLTSLPVLPPGLLELSIFS 271 (788)
T ss_pred EEEcCCCCCCcCCcchh--cCCCEEEccCC------cCCCCCC--CCCCCcEEEecCCccCcccCcccccceeeccC
Confidence 344433 335565443 36777777776 4443 32 246777777777766541 245566666655
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.71 E-value=3.1e-05 Score=83.76 Aligned_cols=100 Identities=10% Similarity=0.033 Sum_probs=49.2
Q ss_pred CceeeEEEecCCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccC
Q 013278 261 SNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYF 340 (446)
Q Consensus 261 p~L~~L~~~~~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~ 340 (446)
++|++|.+.++....+.-.-.++|+.+++..+.-... ...+ .++|+.|.++.+.+..
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~L----------P~~l--p~~L~~LdLs~N~Lt~----------- 381 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVL----------PETL--PPTITTLDVSRNALTN----------- 381 (754)
T ss_pred ccceeccccCCccccCChhhcCcccEEECCCCCCCcC----------Chhh--cCCcCEEECCCCcCCC-----------
Confidence 4666666666544322211224566666543311000 1101 2467777777654421
Q ss_pred CC--ccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 341 SA--SFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 341 ~p--~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
+| ...+|+.|++..+....---++..++..+|.+..|.+..+.
T Consensus 382 LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 382 LPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 22 11256666666543321001236667777888888887655
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=1.7e-06 Score=84.67 Aligned_cols=208 Identities=18% Similarity=0.140 Sum_probs=124.2
Q ss_pred CCCCceEEEeccccccccccccCC----CcccCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhH
Q 013278 121 TCESLVSLKLDFGNREHQGVLNLP----TCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESL 196 (446)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~l~~p----~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 196 (446)
..++|+...|.++ ....+ ....|++++.|+|+++-+.. = ..+
T Consensus 119 n~kkL~~IsLdn~------~V~~~~~~~~~k~~~~v~~LdLS~NL~~n------------w----------------~~v 164 (505)
T KOG3207|consen 119 NLKKLREISLDNY------RVEDAGIEEYSKILPNVRDLDLSRNLFHN------------W----------------FPV 164 (505)
T ss_pred hHHhhhheeecCc------cccccchhhhhhhCCcceeecchhhhHHh------------H----------------HHH
Confidence 3567888888877 44442 23468888888888887766 1 445
Q ss_pred HHhhhccccccccCcccccccccccccCCc--ceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCC
Q 013278 197 EALKLHFGREIDSSPLLENLKMDSCCFPDL--KILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLP 274 (446)
Q Consensus 197 ~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~--~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~ 274 (446)
.. ++...|+||.|.|+.+.+... ....-..++||+|.+..|.+.. .+...+....|+|+.|.+.++...
T Consensus 165 ~~-------i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~--k~V~~~~~~fPsl~~L~L~~N~~~ 235 (505)
T KOG3207|consen 165 LK-------IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW--KDVQWILLTFPSLEVLYLEANEII 235 (505)
T ss_pred HH-------HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH--HHHHHHHHhCCcHHHhhhhccccc
Confidence 55 777889999999998874321 1222345889999999998753 345666778899999988887421
Q ss_pred c---eeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhccc-CCCccCccceE
Q 013278 275 D---FTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSY-FSASFNNLKSL 350 (446)
Q Consensus 275 ~---~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~-~~p~f~~L~~L 350 (446)
. .....+..|+++++... ...+. +-....+.+++|+.|.++.+.+..+..+. .+.. ..-.|+.|+.|
T Consensus 236 ~~~~~~~~i~~~L~~LdLs~N---~li~~-----~~~~~~~~l~~L~~Lnls~tgi~si~~~d-~~s~~kt~~f~kL~~L 306 (505)
T KOG3207|consen 236 LIKATSTKILQTLQELDLSNN---NLIDF-----DQGYKVGTLPGLNQLNLSSTGIASIAEPD-VESLDKTHTFPKLEYL 306 (505)
T ss_pred ceecchhhhhhHHhhccccCC---ccccc-----ccccccccccchhhhhccccCcchhcCCC-ccchhhhcccccceee
Confidence 1 11123345666666433 11111 11234566777777777766654432111 1111 12367778888
Q ss_pred EEEeecC-cccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 351 ILCVTTA-EWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 351 ~l~~~~~-~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
.+..+.- +|..+ .=++..++|+.|.+....
T Consensus 307 ~i~~N~I~~w~sl---~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 307 NISENNIRDWRSL---NHLRTLENLKHLRITLNY 337 (505)
T ss_pred ecccCcccccccc---chhhccchhhhhhccccc
Confidence 7776542 34332 334556666666655443
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.62 E-value=2.3e-06 Score=75.76 Aligned_cols=100 Identities=21% Similarity=0.225 Sum_probs=23.7
Q ss_pred CCCceEEEeccccccccccccCC-Cc-ccCCCccEEEeeceEecC----ccccccccccchhhcccCcccCccchhhhhh
Q 013278 122 CESLVSLKLDFGNREHQGVLNLP-TC-VGFSRLKSLDLQHVESLD----ISTTSLKYLTVDEFLLSEPKGLRSCKVICES 195 (446)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~l~~p-~~-~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 195 (446)
+.++++|+|.++ .++.. .. ..+.+|+.|+|+++.+.. ..+++|+.|.++. ..
T Consensus 18 ~~~~~~L~L~~n------~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~----------------N~ 75 (175)
T PF14580_consen 18 PVKLRELNLRGN------QISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSN----------------NR 75 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--S----------------S-
T ss_pred cccccccccccc------ccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCC----------------CC
Confidence 445666777766 55442 11 245667777777666655 1234444444444 33
Q ss_pred HHHhhhccccccccCcccccccccccccCCcceEE-E-eccccceEEEeeeec
Q 013278 196 LEALKLHFGREIDSSPLLENLKMDSCCFPDLKILD-I-SSNSLKSLTLERIEF 246 (446)
Q Consensus 196 l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~-i-~~~~Lr~L~l~~~~~ 246 (446)
+..+... +...||+|+.|.|.++...+...+. + ..|+|+.|++.+|..
T Consensus 76 I~~i~~~---l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 76 ISSISEG---LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp --S-CHH---HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCccccc---hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 3221000 2234666777777666644333221 1 124555555555443
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.49 E-value=6.6e-05 Score=73.36 Aligned_cols=72 Identities=19% Similarity=0.098 Sum_probs=36.7
Q ss_pred HHHcccCCCccEEEEechhHHHHHHHhhhccc-CCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 308 SKILNGLRDVKVLKLSCTLYQFLNAILEQRSY-FSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 308 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~-~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
..+-.+++.++.|.++......-... .... .......|..|.+..+....+.. ...+..|++||.+++....
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi--~~l~~~~c~~~~l~~lEL~n~p~i~d~~--Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGI--RHLSSSSCSLEGLEVLELDNCPLITDAT--LEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhh--hhhhhccccccccceeeecCCCCchHHH--HHHHhhCcccceeeeechh
Confidence 44455666677766664322110000 0000 01234456666666555444544 6777888888886554433
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.48 E-value=2.3e-05 Score=69.37 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=43.8
Q ss_pred hceeeeEc-ccccCCCcc-CCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecCc------ccccccccc
Q 013278 104 FQNGSVNE-PIKLPRSLV-TCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLDI------STTSLKYLT 174 (446)
Q Consensus 104 l~~L~l~~-~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~~------~~~~L~~L~ 174 (446)
+++|++.. ....-..+. .+.+|+.|+|++| .+.. .....+++|++|+++++.+.+. .+|+|+.|.
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N------~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGATLDKLEVLDLSNN------QITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--------S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccchhhhhcCCCEEECCCC------CCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 46666665 222223344 3678999999999 6766 4556789999999999988762 489999999
Q ss_pred chhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCc---ceEEEe-ccccceEEEee
Q 013278 175 VDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDL---KILDIS-SNSLKSLTLER 243 (446)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~---~~l~i~-~~~Lr~L~l~~ 243 (446)
+.+ ..+..+..- .-++.||.|+.|+|.+|.+... +...+. .|+|+.|+-..
T Consensus 95 L~~----------------N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSN----------------NKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT----------------S---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcC----------------CcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 987 555442221 1357899999999999875322 222222 26666665444
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.41 E-value=0.00018 Score=77.67 Aligned_cols=204 Identities=15% Similarity=0.084 Sum_probs=120.4
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC--ccccccccccchhh
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD--ISTTSLKYLTVDEF 178 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~--~~~~~L~~L~l~~~ 178 (446)
++.|.+.. ...+|. ..++|++|+|++| .+.. |. ..++|+.|+|.++.+.. ...+.|+.|.+++
T Consensus 224 L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N------~LtsLP~--lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~- 291 (788)
T PRK15387 224 ITTLVIPDNNLTSLPA---LPPELRTLEVSGN------QLTSLPV--LPPGLLELSIFSNPLTHLPALPSGLCKLWIFG- 291 (788)
T ss_pred CCEEEccCCcCCCCCC---CCCCCcEEEecCC------ccCcccC--cccccceeeccCCchhhhhhchhhcCEEECcC-
Confidence 66666654 344553 2478999999988 5554 32 34688999998887654 1234677777776
Q ss_pred cccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEE
Q 013278 179 LLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKI 258 (446)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i 258 (446)
..+.. +-...|.|+.|+|.+|.+.+... ..++|+.|.+.+|.... +..
T Consensus 292 ---------------N~Lt~-------LP~~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~~----LP~--- 339 (788)
T PRK15387 292 ---------------NQLTS-------LPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS----LPT--- 339 (788)
T ss_pred ---------------Ccccc-------ccccccccceeECCCCccccCCC---CcccccccccccCcccc----ccc---
Confidence 55544 32334779999998887654322 23568888888877542 111
Q ss_pred ecCceeeEEEecCCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcc
Q 013278 259 ACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRS 338 (446)
Q Consensus 259 ~ap~L~~L~~~~~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 338 (446)
..++|+.|+++++....+. ...++|..+.+..... ..+....++|+.|.++.+.+..
T Consensus 340 lp~~Lq~LdLS~N~Ls~LP-~lp~~L~~L~Ls~N~L-------------~~LP~l~~~L~~LdLs~N~Lt~--------- 396 (788)
T PRK15387 340 LPSGLQELSVSDNQLASLP-TLPSELYKLWAYNNRL-------------TSLPALPSGLKELIVSGNRLTS--------- 396 (788)
T ss_pred cccccceEecCCCccCCCC-CCCcccceehhhcccc-------------ccCcccccccceEEecCCcccC---------
Confidence 1247899999888664322 1234566655543210 1111223578888888765531
Q ss_pred cCCC-ccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 339 YFSA-SFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 339 ~~~p-~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
+| ...+|+.|+++.+.... + +.+ ..+|+.|++..+.
T Consensus 397 --LP~l~s~L~~LdLS~N~Lss-I---P~l---~~~L~~L~Ls~Nq 433 (788)
T PRK15387 397 --LPVLPSELKELMVSGNRLTS-L---PML---PSGLLSLSVYRNQ 433 (788)
T ss_pred --CCCcccCCCEEEccCCcCCC-C---Ccc---hhhhhhhhhccCc
Confidence 33 34688888887654221 1 222 2356666665433
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.34 E-value=4.5e-06 Score=88.47 Aligned_cols=149 Identities=21% Similarity=0.179 Sum_probs=89.4
Q ss_pred CcccccccccccccCCc-ceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCce--eecCCCCceE
Q 013278 210 SPLLENLKMDSCCFPDL-KILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDF--TLESLNSLQN 286 (446)
Q Consensus 210 cp~Le~L~L~~c~~~~~-~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~--~l~~~p~L~~ 286 (446)
.+.|+.|.+.++..++. ...-+-.++||.|.+.+++... -.......-+.||.|.++|+....+ .+.++++|+.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~---fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS---FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHT 434 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc---CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHH
Confidence 45788888888875432 1122334788888888886532 1122334556788888888865433 3345556655
Q ss_pred EEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecC-cccHHhHH
Q 013278 287 AFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTA-EWTVPLII 365 (446)
Q Consensus 287 l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~-~~~~l~l~ 365 (446)
+.-... ... ...-+..++.++.++++.+.++... .+...|+ ++|++|++..+.. ..| .
T Consensus 435 L~ahsN---~l~--------~fPe~~~l~qL~~lDlS~N~L~~~~-----l~~~~p~-p~LkyLdlSGN~~l~~d----~ 493 (1081)
T KOG0618|consen 435 LRAHSN---QLL--------SFPELAQLPQLKVLDLSCNNLSEVT-----LPEALPS-PNLKYLDLSGNTRLVFD----H 493 (1081)
T ss_pred HhhcCC---cee--------echhhhhcCcceEEecccchhhhhh-----hhhhCCC-cccceeeccCCcccccc----h
Confidence 544322 000 1225678899999999998876431 1222444 8999999987652 222 3
Q ss_pred HHhhcCCCCcEEEEEec
Q 013278 366 RLLNHSPNLEVLTIYFD 382 (446)
Q Consensus 366 ~lL~~~P~Le~L~l~~~ 382 (446)
.-|+.+.++..+++...
T Consensus 494 ~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 494 KTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhHHhhhhhheecccC
Confidence 34555666666666665
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=3.1e-06 Score=79.10 Aligned_cols=168 Identities=19% Similarity=0.115 Sum_probs=94.9
Q ss_pred hhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCC
Q 013278 194 ESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPL 272 (446)
Q Consensus 194 ~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 272 (446)
..+.. +++.|.+|+.|+|.+...++.....+. ...|+.|.+..|...+ ..+...+..++..|..|+++=+.
T Consensus 200 stl~~-------iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 200 STLHG-------ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT-ENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHH-------HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc-hhHHHHHHHhhhhHhhcCchHhh
Confidence 66777 889999999999999876554333443 4678888888886433 23344445566777777765443
Q ss_pred CCce----eec-CCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCcc
Q 013278 273 LPDF----TLE-SLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNL 347 (446)
Q Consensus 273 ~~~~----~l~-~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L 347 (446)
.... .+. -.+.|.++.+..+... .. ..++.-+.+.++++..|+++.+..-. +.. ...+-.|+.|
T Consensus 272 l~~~~Vtv~V~hise~l~~LNlsG~rrn-l~-----~sh~~tL~~rcp~l~~LDLSD~v~l~-~~~----~~~~~kf~~L 340 (419)
T KOG2120|consen 272 LFTEKVTVAVAHISETLTQLNLSGYRRN-LQ-----KSHLSTLVRRCPNLVHLDLSDSVMLK-NDC----FQEFFKFNYL 340 (419)
T ss_pred ccchhhhHHHhhhchhhhhhhhhhhHhh-hh-----hhHHHHHHHhCCceeeeccccccccC-chH----HHHHHhcchh
Confidence 2111 111 1245666665543111 10 12345566778888888777543210 000 0114467777
Q ss_pred ceEEEEeecCc-ccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 348 KSLILCVTTAE-WTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 348 ~~L~l~~~~~~-~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
++|+++.|..- .+. .--++.-|.|..|++.++-
T Consensus 341 ~~lSlsRCY~i~p~~---~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPET---LLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcCCChHH---eeeeccCcceEEEEecccc
Confidence 77777765431 111 1234567777777776654
No 27
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.19 E-value=1e-05 Score=78.55 Aligned_cols=115 Identities=26% Similarity=0.219 Sum_probs=68.0
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC------cccccccccc
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD------ISTTSLKYLT 174 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~ 174 (446)
+++++..- -..+|..+...++|+.|.|..+ .+.. |.+.++..|++||+..+.+.. ..+++|..|+
T Consensus 185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N------ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLPPELGGLESLELLYLRRN------KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHhcccchhhhhcCChhhcchhhhHHHHhhhc------ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 55555533 4567777777777777777777 5544 666677777777777665543 1466677777
Q ss_pred chhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeee
Q 013278 175 VDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIE 245 (446)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~ 245 (446)
+-+ ..+.. +|+-+....+|++|+++++..++. .....+-+|+.|.+.++.
T Consensus 259 LRd----------------Nklke----~Pde~clLrsL~rLDlSNN~is~L-p~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 259 LRD----------------NKLKE----VPDEICLLRSLERLDLSNNDISSL-PYSLGNLHLKFLALEGNP 308 (565)
T ss_pred ccc----------------ccccc----CchHHHHhhhhhhhcccCCccccC-CcccccceeeehhhcCCc
Confidence 766 33333 222344456777777777764432 222333355666655543
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.16 E-value=0.00016 Score=69.18 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=76.0
Q ss_pred ccccCcccccccccccccCC--cc---eEEEeccccceEEEeeeecCCCCCC----------CceEEEecCceeeEEEec
Q 013278 206 EIDSSPLLENLKMDSCCFPD--LK---ILDISSNSLKSLTLERIEFGGDELD----------NYKLKIACSNLESFNIFA 270 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~--~~---~l~i~~~~Lr~L~l~~~~~~~~~~~----------~~~~~i~ap~L~~L~~~~ 270 (446)
.+..||+|+.|+|+++.+.. .+ .+--++.+|++|.+.+|...-.... ...-.-+.|.|+.|....
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 56789999999999997531 11 1112357899999999976420000 011122344555554444
Q ss_pred CCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceE
Q 013278 271 PLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSL 350 (446)
Q Consensus 271 ~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L 350 (446)
+... +.. .-.+...++..+.++.+.+..+.+..-.. ......+...++|+.|
T Consensus 167 Nrle---------------------n~g-----a~~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevL 218 (382)
T KOG1909|consen 167 NRLE---------------------NGG-----ATALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVL 218 (382)
T ss_pred cccc---------------------ccc-----HHHHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceee
Confidence 3221 000 11236677778888888888765521000 0001113345556666
Q ss_pred EEEeecCcc-cHHhHHHHhhcCCCCcEEEEE
Q 013278 351 ILCVTTAEW-TVPLIIRLLNHSPNLEVLTIY 380 (446)
Q Consensus 351 ~l~~~~~~~-~~l~l~~lL~~~P~Le~L~l~ 380 (446)
++..+.... ...++...+...|+|+.|.+.
T Consensus 219 dl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 219 DLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 665544322 222335555555555555553
No 29
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.13 E-value=7.1e-06 Score=83.57 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=33.3
Q ss_pred cccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 311 LNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 311 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
++.+..++.+....+.++. -|..+..+..|+.|.|.-+. +..++.-+.-.|.|+.|++..++
T Consensus 312 IGKL~~Levf~aanN~LEl-------VPEglcRC~kL~kL~L~~Nr----LiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLEL-------VPEGLCRCVKLQKLKLDHNR----LITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhhhHHHHhhcccccc-------CchhhhhhHHHHHhcccccc----eeechhhhhhcCCcceeeccCCc
Confidence 3444445555444444432 22234456677777775321 12225555666888888887665
No 30
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.08 E-value=8.9e-06 Score=82.88 Aligned_cols=60 Identities=22% Similarity=0.224 Sum_probs=38.6
Q ss_pred ccccCCCccCCCCceEEEeccccccccccccC-CC-cccCCCccEEEeeceEecCc------cccccccccchh
Q 013278 112 PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PT-CVGFSRLKSLDLQHVESLDI------STTSLKYLTVDE 177 (446)
Q Consensus 112 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~-~~~~~~L~~L~L~~~~~~~~------~~~~L~~L~l~~ 177 (446)
..-+|..++..+.|+.|+|+.+ .+.. |. ...-.++-.|+|+++.+.+. +++-|-.|+|+.
T Consensus 92 nsGiP~diF~l~dLt~lDLShN------qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHN------QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred cCCCCchhcccccceeeecchh------hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 4556777788888888888877 5554 53 23556777788887776552 344444555554
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.97 E-value=2e-05 Score=68.15 Aligned_cols=101 Identities=24% Similarity=0.338 Sum_probs=67.6
Q ss_pred ccCCCCceEEEeccccccccccccC--CCcccCCCccEEEeeceEecC-----ccccccccccchhhcccCcccCccchh
Q 013278 119 LVTCESLVSLKLDFGNREHQGVLNL--PTCVGFSRLKSLDLQHVESLD-----ISTTSLKYLTVDEFLLSEPKGLRSCKV 191 (446)
Q Consensus 119 l~~~~~L~~L~L~~~~~~~~~~l~~--p~~~~~~~L~~L~L~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~ 191 (446)
++..++.+.|.|+.+ .+.. |..+.+.+|+.|++..+.+.. .++|.|++|+++-
T Consensus 29 Lf~~s~ITrLtLSHN------Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-------------- 88 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN------KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-------------- 88 (264)
T ss_pred ccchhhhhhhhcccC------ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch--------------
Confidence 466778888889888 6654 677789999999999887765 2577777777765
Q ss_pred hhhhHHHhhhccccccccCcccccccccccccCCcceE--E-EeccccceEEEeeeec
Q 013278 192 ICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKIL--D-ISSNSLKSLTLERIEF 246 (446)
Q Consensus 192 ~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l--~-i~~~~Lr~L~l~~~~~ 246 (446)
..+..+.. =+..+|.||.|+|.++.... ..+ . +-...|+-|.+.++.|
T Consensus 89 --nrl~~lpr----gfgs~p~levldltynnl~e-~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 89 --NRLNILPR----GFGSFPALEVLDLTYNNLNE-NSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred --hhhhcCcc----ccCCCchhhhhhcccccccc-ccCCcchhHHHHHHHHHhcCCCc
Confidence 44444222 34678999999998876321 111 1 1125677777777665
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.87 E-value=8.2e-05 Score=79.25 Aligned_cols=119 Identities=20% Similarity=0.209 Sum_probs=85.9
Q ss_pred CCceEEEeccccccccccccC---CCcccCCCccEEEeeceEecC------ccccccccccchhhcccCcccCccchhhh
Q 013278 123 ESLVSLKLDFGNREHQGVLNL---PTCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEPKGLRSCKVIC 193 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~---p~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 193 (446)
+.|+.|.|.++ .+.+ |...+|++||.|+|+++.+.. .+++.|+.|.|++
T Consensus 359 ~~Lq~LylanN------~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG---------------- 416 (1081)
T KOG0618|consen 359 AALQELYLANN------HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG---------------- 416 (1081)
T ss_pred HHHHHHHHhcC------cccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc----------------
Confidence 45777777777 6665 666799999999999997664 3688899999998
Q ss_pred hhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCC
Q 013278 194 ESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPL 272 (446)
Q Consensus 194 ~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 272 (446)
+.+..+. +-+..|+.|++|...++...... .+. .+.|+.++++.+.... ..-......|+|++|+++|+.
T Consensus 417 NkL~~Lp----~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~---~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 417 NKLTTLP----DTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSE---VTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred chhhhhh----HHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhh---hhhhhhCCCcccceeeccCCc
Confidence 7776632 24678999999999988743211 333 4899999999887532 111122233899999999985
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.84 E-value=0.00077 Score=73.10 Aligned_cols=65 Identities=25% Similarity=0.302 Sum_probs=40.3
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC---ccccccccccchh
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD---ISTTSLKYLTVDE 177 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~---~~~~~L~~L~l~~ 177 (446)
++.|++.. ...+|..+. ++|+.|+|++| .+.. |.. -..+|+.|+|+++.+.. .-+++|++|++++
T Consensus 222 L~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N------~L~~LP~~-l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~ 292 (754)
T PRK15370 222 IKTLYANSNQLTSIPATLP--DTIQEMELSIN------RITELPER-LPSALQSLDLFHNKISCLPENLPEELRYLSVYD 292 (754)
T ss_pred CCEEECCCCccccCChhhh--ccccEEECcCC------ccCcCChh-HhCCCCEEECcCCccCccccccCCCCcEEECCC
Confidence 67777655 334554332 46888888888 4443 322 23578888888776654 1234688888876
No 34
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.00088 Score=63.00 Aligned_cols=200 Identities=16% Similarity=0.197 Sum_probs=107.1
Q ss_pred ccccCcccccccccccccCC-cceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCceee-----c
Q 013278 206 EIDSSPLLENLKMDSCCFPD-LKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTL-----E 279 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~-~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~l-----~ 279 (446)
++.+.|.|+.|.|..+.... ...+.....+|++|.+.+..... .......-+.|.++.|.++++....+.+ .
T Consensus 92 ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w--~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e 169 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW--TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE 169 (418)
T ss_pred HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh--hhhhhhhhcchhhhhhhhccchhhhhcccccccc
Confidence 77788888888888776432 12222334578888887765421 1223334455666666666553322211 0
Q ss_pred -CCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeec-C
Q 013278 280 -SLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTT-A 357 (446)
Q Consensus 280 -~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~-~ 357 (446)
-.+.+..+...-+ ....+....++-+.+|++..+.++.+.++.... +....++| .+--|.+.... .
T Consensus 170 ~~s~~v~tlh~~~c-------~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~--ek~se~~p---~~~~LnL~~~~id 237 (418)
T KOG2982|consen 170 DWSTEVLTLHQLPC-------LEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS--EKGSEPFP---SLSCLNLGANNID 237 (418)
T ss_pred ccchhhhhhhcCCc-------HHHHHHHHHhHHhhcccchheeeecCcccchhh--cccCCCCC---cchhhhhcccccc
Confidence 0112222222111 011134456777789999999998876654321 11222344 33345555432 2
Q ss_pred cccHHhHHHHhhcCCCCcEEEEEecC--CCCCCCCCCCCCccccccccccceeEE---ecCC---CHhHHHHHHHHHh
Q 013278 358 EWTVPLIIRLLNHSPNLEVLTIYFDS--DEYYDDWEIPDKVILCLTCHLKTVELI---DFSG---NENELELVRFLLK 427 (446)
Q Consensus 358 ~~~~l~l~~lL~~~P~Le~L~l~~~~--~~~~~~w~~~~~~~~~~~c~~~~L~~v---~f~g---~~~e~~~~~~ll~ 427 (446)
.|+. ..-|..+|.|..|.+..++ ++-.. .++ ....--.+++++++ .... .+.|..|++|.++
T Consensus 238 swas---vD~Ln~f~~l~dlRv~~~Pl~d~l~~--~er---r~llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 238 SWAS---VDALNGFPQLVDLRVSENPLSDPLRG--GER---RFLLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred cHHH---HHHHcCCchhheeeccCCcccccccC--Ccc---eEEEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 4443 4668899999999998766 11111 111 11222245777777 2222 3457899999876
No 35
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.65 E-value=0.00059 Score=73.32 Aligned_cols=153 Identities=23% Similarity=0.252 Sum_probs=101.8
Q ss_pred cccccccccccc-cCCcceEEE--eccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCce-eecCCCCceE
Q 013278 211 PLLENLKMDSCC-FPDLKILDI--SSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDF-TLESLNSLQN 286 (446)
Q Consensus 211 p~Le~L~L~~c~-~~~~~~l~i--~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~-~l~~~p~L~~ 286 (446)
.+|++|++.+.. +...+.-.+ ..|+|++|.|.+-.+.. .+...+..+.|+|.+|+++|+..... -+.++.+|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 579999998854 222222223 34999999999987754 23567788899999999999987544 3456777777
Q ss_pred EEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhH----HHHHHHhhhcccCCC-ccCccceEEEEeecCcccH
Q 013278 287 AFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLY----QFLNAILEQRSYFSA-SFNNLKSLILCVTTAEWTV 361 (446)
Q Consensus 287 l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~----~~~~~~~~~~~~~~p-~f~~L~~L~l~~~~~~~~~ 361 (446)
+.+.......+ .. ..-+-.+++|+.|+++.... ..+..|.+ .+ .+++||.|+.+....+.+.
T Consensus 200 L~mrnLe~e~~---~~-----l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYle-----c~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESY---QD-----LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLE-----CGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCch---hh-----HHHHhcccCCCeeeccccccccchHHHHHHHH-----hcccCccccEEecCCcchhHHH
Confidence 76654321111 11 22344699999999987532 11222332 22 5779999999865445555
Q ss_pred HhHHHHhhcCCCCcEEEEE
Q 013278 362 PLIIRLLNHSPNLEVLTIY 380 (446)
Q Consensus 362 l~l~~lL~~~P~Le~L~l~ 380 (446)
+ ..+++.-|+|+...+-
T Consensus 267 l--e~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 267 L--EELLNSHPNLQQIAAL 283 (699)
T ss_pred H--HHHHHhCccHhhhhhh
Confidence 5 8888889999988764
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.47 E-value=0.0003 Score=68.39 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=61.0
Q ss_pred ecCceeeEEEecCCCCce---eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhh
Q 013278 259 ACSNLESFNIFAPLLPDF---TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILE 335 (446)
Q Consensus 259 ~ap~L~~L~~~~~~~~~~---~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~ 335 (446)
..|+|++++++++....+ .+..+.+++++.+.-.. +..--...+.++++++.|.+..+.+..+
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~---------l~~v~~~~f~~ls~L~tL~L~~N~it~~----- 337 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK---------LEFVSSGMFQGLSGLKTLSLYDNQITTV----- 337 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch---------HHHHHHHhhhccccceeeeecCCeeEEE-----
Confidence 456777777777654332 45566666666664331 1111256678899999999988766432
Q ss_pred hcccCCCccCccceEEEEeecC--cccHHhHHHHhhcC
Q 013278 336 QRSYFSASFNNLKSLILCVTTA--EWTVPLIIRLLNHS 371 (446)
Q Consensus 336 ~~~~~~p~f~~L~~L~l~~~~~--~~~~l~l~~lL~~~ 371 (446)
.+..+-....|..|.+-.++. +..+.|+..++++-
T Consensus 338 -~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~ 374 (498)
T KOG4237|consen 338 -APGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK 374 (498)
T ss_pred -ecccccccceeeeeehccCcccCccchHHHHHHHhhC
Confidence 233355666788888876653 44666778888753
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.36 E-value=0.003 Score=58.82 Aligned_cols=170 Identities=20% Similarity=0.083 Sum_probs=100.0
Q ss_pred ccccCcccccccccccccCCcc-----eEEEeccccceEEEeeeecCCCCCC----------CceEEEecCceeeEEEec
Q 013278 206 EIDSSPLLENLKMDSCCFPDLK-----ILDISSNSLKSLTLERIEFGGDELD----------NYKLKIACSNLESFNIFA 270 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~~-----~l~i~~~~Lr~L~l~~~~~~~~~~~----------~~~~~i~ap~L~~L~~~~ 270 (446)
.+..||+|+..+|+.+.+.... .+--++..|++|.+++|.......+ ...-..+.|.|+++....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4568999999999988764211 1112346799999999875320000 011124679999998876
Q ss_pred CCCCcee-------ecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCc
Q 013278 271 PLLPDFT-------LESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSAS 343 (446)
Q Consensus 271 ~~~~~~~-------l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~ 343 (446)
+...... +..-..|..+.+...... ++ .+..-...-+..+.+++.|++..+++....+ ......+|.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIr--pe--gv~~L~~~gl~y~~~LevLDlqDNtft~~gS--~~La~al~~ 240 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIR--PE--GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS--RYLADALCE 240 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcC--cc--hhHHHHHHHHHHhCcceeeeccccchhhhhH--HHHHHHhcc
Confidence 6543221 222246777777654211 11 1111123344678899999999887753221 111234788
Q ss_pred cCccceEEEEeecCcccHHhHHHHhh-----cCCCCcEEEEEecC
Q 013278 344 FNNLKSLILCVTTAEWTVPLIIRLLN-----HSPNLEVLTIYFDS 383 (446)
Q Consensus 344 f~~L~~L~l~~~~~~~~~l~l~~lL~-----~~P~Le~L~l~~~~ 383 (446)
+++|+.|.+..|....... ..+++ ..|+|+.|..+-+.
T Consensus 241 W~~lrEL~lnDClls~~G~--~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGV--KSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred cchhhhccccchhhccccH--HHHHHHhhhhcCCCccccccchhh
Confidence 8999999999886543222 33443 36888888776544
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.29 E-value=0.0018 Score=69.54 Aligned_cols=116 Identities=24% Similarity=0.293 Sum_probs=76.4
Q ss_pred HHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCc-ccHHhHHHHhhcCCCCcEEEEEecCC
Q 013278 306 RMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAE-WTVPLIIRLLNHSPNLEVLTIYFDSD 384 (446)
Q Consensus 306 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~-~~~l~l~~lL~~~P~Le~L~l~~~~~ 384 (446)
.+..+.+++|+|.+|+|++..+..+. ....+.||+.|.+.....+ ++-+ .. |-+..+|+.|+|+....
T Consensus 164 dF~~lc~sFpNL~sLDIS~TnI~nl~--------GIS~LknLq~L~mrnLe~e~~~~l--~~-LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 164 DFSQLCASFPNLRSLDISGTNISNLS--------GISRLKNLQVLSMRNLEFESYQDL--ID-LFNLKKLRVLDISRDKN 232 (699)
T ss_pred hHHHHhhccCccceeecCCCCccCcH--------HHhccccHHHHhccCCCCCchhhH--HH-HhcccCCCeeecccccc
Confidence 35788899999999999988765432 2456778888877754432 2221 22 33578999999987662
Q ss_pred CCCCCCCCCCCccccccc--cccceeEEecCCCHhHHHHHHHHHhcCccccceEE
Q 013278 385 EYYDDWEIPDKVILCLTC--HLKTVELIDFSGNENELELVRFLLKNGHVLQKLRV 437 (446)
Q Consensus 385 ~~~~~w~~~~~~~~~~~c--~~~~L~~v~f~g~~~e~~~~~~ll~~a~~L~~~~i 437 (446)
.... .. +.--.+| .+.+|+.++-.|+.-.-++++-++..=+.|+++..
T Consensus 233 ~~~~--~i---i~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 233 NDDT--KI---IEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred ccch--HH---HHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 1100 00 0001233 35689999888988888889888888888888764
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.11 E-value=0.0032 Score=45.28 Aligned_cols=57 Identities=25% Similarity=0.305 Sum_probs=41.7
Q ss_pred CCceEEEeccccccccccccC-C--CcccCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHHHh
Q 013278 123 ESLVSLKLDFGNREHQGVLNL-P--TCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEAL 199 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~-p--~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 199 (446)
++|++|+++++ .+.. | .+.++++|++|+++++.+... -..
T Consensus 1 p~L~~L~l~~n------~l~~i~~~~f~~l~~L~~L~l~~N~l~~i------------------------------~~~- 43 (61)
T PF13855_consen 1 PNLESLDLSNN------KLTEIPPDSFSNLPNLETLDLSNNNLTSI------------------------------PPD- 43 (61)
T ss_dssp TTESEEEETSS------TESEECTTTTTTGTTESEEEETSSSESEE------------------------------ETT-
T ss_pred CcCcEEECCCC------CCCccCHHHHcCCCCCCEeEccCCccCcc------------------------------CHH-
Confidence 47889999988 5554 3 345789999999998877640 112
Q ss_pred hhccccccccCcccccccccccc
Q 013278 200 KLHFGREIDSSPLLENLKMDSCC 222 (446)
Q Consensus 200 ~~~~~~ll~~cp~Le~L~L~~c~ 222 (446)
.+.++|+|++|++.+|.
T Consensus 44 ------~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 44 ------AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ------TTTTSTTESEEEETSSS
T ss_pred ------HHcCCCCCCEEeCcCCc
Confidence 66788889998888874
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.74 E-value=0.0043 Score=58.50 Aligned_cols=103 Identities=18% Similarity=0.137 Sum_probs=62.3
Q ss_pred cCceeeEEEecCCCCce-eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcc
Q 013278 260 CSNLESFNIFAPLLPDF-TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRS 338 (446)
Q Consensus 260 ap~L~~L~~~~~~~~~~-~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 338 (446)
+|.++.|.++.+....+ .+..+++|+.++++... -..+..+-..+.+++.|.+..+.++.++.
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~----------Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG------ 369 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL----------LAECVGWHLKLGNIKTLKLAQNKIETLSG------ 369 (490)
T ss_pred ccceeEEeccccceeeehhhhhcccceEeecccch----------hHhhhhhHhhhcCEeeeehhhhhHhhhhh------
Confidence 45555555555543211 24456677777765431 11123344567889999999888876532
Q ss_pred cCCCccCccceEEEEeecCc-ccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 339 YFSASFNNLKSLILCVTTAE-WTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 339 ~~~p~f~~L~~L~l~~~~~~-~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
+..+..|..|++..+..+ .+. ..-+.+.|.||.+.+..++
T Consensus 370 --L~KLYSLvnLDl~~N~Ie~lde---V~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 370 --LRKLYSLVNLDLSSNQIEELDE---VNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred --hHhhhhheeccccccchhhHHH---hcccccccHHHHHhhcCCC
Confidence 446667888888765322 222 3446678999998887665
No 41
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=95.39 E-value=0.017 Score=33.75 Aligned_cols=14 Identities=43% Similarity=0.451 Sum_probs=12.6
Q ss_pred CccEEEeeceEecC
Q 013278 151 RLKSLDLQHVESLD 164 (446)
Q Consensus 151 ~L~~L~L~~~~~~~ 164 (446)
+||+|+|..+.+.+
T Consensus 1 sLKtL~L~~v~f~~ 14 (26)
T PF07723_consen 1 SLKTLHLDSVVFSD 14 (26)
T ss_pred CCeEEEeeEEEECC
Confidence 58999999999977
No 42
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.12 E-value=0.00094 Score=57.95 Aligned_cols=47 Identities=28% Similarity=0.349 Sum_probs=32.3
Q ss_pred ccccCCCccCCCCceEEEeccccccccccccC-C-CcccCCCccEEEeeceEecC
Q 013278 112 PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-P-TCVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 112 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p-~~~~~~~L~~L~L~~~~~~~ 164 (446)
..++|.++.+.+.|+.|+++.+ .+.. | .+..||.|+.|+|.++.+..
T Consensus 68 ie~lp~~issl~klr~lnvgmn------rl~~lprgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 68 IEELPTSISSLPKLRILNVGMN------RLNILPRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred hhhcChhhhhchhhhheecchh------hhhcCccccCCCchhhhhhcccccccc
Confidence 4567777777777777777766 4443 4 44567788888877776655
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.87 E-value=0.046 Score=48.95 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=24.3
Q ss_pred CCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC
Q 013278 123 ESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~ 164 (446)
.....++|+.+ .+.. +...++++|.+|.|..+.++.
T Consensus 42 d~~d~iDLtdN------dl~~l~~lp~l~rL~tLll~nNrIt~ 78 (233)
T KOG1644|consen 42 DQFDAIDLTDN------DLRKLDNLPHLPRLHTLLLNNNRITR 78 (233)
T ss_pred cccceeccccc------chhhcccCCCccccceEEecCCccee
Confidence 34556677766 4443 445577888888888887765
No 44
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.0024 Score=59.65 Aligned_cols=102 Identities=20% Similarity=0.193 Sum_probs=66.6
Q ss_pred ceeeEEEecCCCCceee-cCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccC
Q 013278 262 NLESFNIFAPLLPDFTL-ESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYF 340 (446)
Q Consensus 262 ~L~~L~~~~~~~~~~~l-~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~ 340 (446)
+.++|+++|+...++.+ ..+|.|+.+.+++.... -...+..|++|+.|.|.-+.+..+.... -
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIs-----------sL~pl~rCtrLkElYLRkN~I~sldEL~-----Y 83 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKIS-----------SLAPLQRCTRLKELYLRKNCIESLDELE-----Y 83 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccc-----------cchhHHHHHHHHHHHHHhcccccHHHHH-----H
Confidence 44566666666655533 46777777777765221 1345567778888877766665543211 1
Q ss_pred CCccCccceEEEEeecCc----ccHHhHHHHhhcCCCCcEEEEEe
Q 013278 341 SASFNNLKSLILCVTTAE----WTVPLIIRLLNHSPNLEVLTIYF 381 (446)
Q Consensus 341 ~p~f~~L~~L~l~~~~~~----~~~l~l~~lL~~~P~Le~L~l~~ 381 (446)
+..+++|+.|.|..+.+. .++- ..+|+..|||++|+=..
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR--~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYR--RKVLRVLPNLKKLDNVP 126 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHH--HHHHHHcccchhccCcc
Confidence 557788999999887642 2555 78899999999998543
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.013 Score=55.39 Aligned_cols=71 Identities=25% Similarity=0.342 Sum_probs=56.3
Q ss_pred hHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCC-ccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEec
Q 013278 304 CHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSA-SFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFD 382 (446)
Q Consensus 304 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p-~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~ 382 (446)
+..+..++..+|+++.|.++.+.+.. ..+..| +..||+.|-+......|... .+++...|.++.|+++.+
T Consensus 86 WseI~~ile~lP~l~~LNls~N~L~s-------~I~~lp~p~~nl~~lVLNgT~L~w~~~--~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 86 WSEIGAILEQLPALTTLNLSCNSLSS-------DIKSLPLPLKNLRVLVLNGTGLSWTQS--TSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHHHHHHHhcCccceEeeccCCcCCC-------ccccCcccccceEEEEEcCCCCChhhh--hhhhhcchhhhhhhhccc
Confidence 34458889999999999999876632 123466 77899999998776677666 899999999999999877
Q ss_pred C
Q 013278 383 S 383 (446)
Q Consensus 383 ~ 383 (446)
.
T Consensus 157 ~ 157 (418)
T KOG2982|consen 157 S 157 (418)
T ss_pred h
Confidence 4
No 46
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.21 E-value=0.0016 Score=63.71 Aligned_cols=132 Identities=20% Similarity=0.169 Sum_probs=74.9
Q ss_pred ccccCCCccCCCCceEEEeccccccccccccC--CCcccCCCccEEEeeceEecC-------------------------
Q 013278 112 PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL--PTCVGFSRLKSLDLQHVESLD------------------------- 164 (446)
Q Consensus 112 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p~~~~~~~L~~L~L~~~~~~~------------------------- 164 (446)
...+|..++.|.+|..|.+.++ .+.. |....+++|+.|+..++....
T Consensus 149 i~slp~~~~~~~~l~~l~~~~n------~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 149 ISSLPEDMVNLSKLSKLDLEGN------KLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred cccCchHHHHHHHHHHhhcccc------chhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC
Confidence 4566777777777777777766 3332 222335555555555444332
Q ss_pred --ccccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEe
Q 013278 165 --ISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLE 242 (446)
Q Consensus 165 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~ 242 (446)
++|..|+.|+++. ..++.+. ++...+.++|..|+|+.+..+....-.+--.+|.+|+++
T Consensus 223 ef~gcs~L~Elh~g~----------------N~i~~lp---ae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGE----------------NQIEMLP---AEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred CCCccHHHHHHHhcc----------------cHHHhhH---HHHhcccccceeeeccccccccCchHHHHhhhhhhhccc
Confidence 2455555555554 3333311 114457788889999988755432222233678899999
Q ss_pred eeecCCCCCCCceEEEecCceeeEEEecCCC
Q 013278 243 RIEFGGDELDNYKLKIACSNLESFNIFAPLL 273 (446)
Q Consensus 243 ~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~ 273 (446)
++...+ +.. ....-.|+.|.+.|+..
T Consensus 284 NN~is~----Lp~-sLgnlhL~~L~leGNPl 309 (565)
T KOG0472|consen 284 NNDISS----LPY-SLGNLHLKFLALEGNPL 309 (565)
T ss_pred CCcccc----CCc-ccccceeeehhhcCCch
Confidence 887654 111 12222778888888654
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.21 E-value=0.05 Score=36.28 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=28.7
Q ss_pred CCceEEEeccccccccccccC-CC-cccCCCccEEEeeceEecC
Q 013278 123 ESLVSLKLDFGNREHQGVLNL-PT-CVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~-p~-~~~~~~L~~L~L~~~~~~~ 164 (446)
++|++|+|+++ .+.. |. ...+++|++|+++++.+.+
T Consensus 1 ~~L~~L~l~~N------~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN------QITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS------S-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC------CCcccCchHhCCCCCCEEEecCCCCCC
Confidence 47899999999 6766 44 6789999999999998876
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.15 E-value=0.026 Score=37.67 Aligned_cols=20 Identities=30% Similarity=0.477 Sum_probs=16.4
Q ss_pred ccccCcccccccccccccCC
Q 013278 206 EIDSSPLLENLKMDSCCFPD 225 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~ 225 (446)
.+..|++|+.|++.+|.+.+
T Consensus 19 ~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 19 ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp HGTTCTTSSEEEETSSCCSB
T ss_pred hHhCCCCCCEEEecCCCCCC
Confidence 46889999999999987553
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.10 E-value=0.055 Score=38.72 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=37.9
Q ss_pred hceeeeEc--ccccCCC-ccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceE
Q 013278 104 FQNGSVNE--PIKLPRS-LVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVE 161 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~-l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~ 161 (446)
++.|++.. ...+|.. +..+++|++|+++++ .+.. + .+.++++|++|+++++.
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N------~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN------NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSS------SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCC------ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35566654 4456654 445899999999999 5654 3 35689999999999875
No 50
>PLN03150 hypothetical protein; Provisional
Probab=94.08 E-value=0.036 Score=59.47 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=24.5
Q ss_pred ccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecC
Q 013278 206 EIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFG 247 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~ 247 (446)
.+..++.|+.|+|.+|.+.+...-.+. .++|+.|++.+|.+.
T Consensus 461 ~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 456667777777777765543222222 256777777766553
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.95 E-value=0.0046 Score=63.67 Aligned_cols=125 Identities=23% Similarity=0.283 Sum_probs=69.9
Q ss_pred CCCceEEEeccccccccccccC----CCcccCCCccEEEeece-EecC----------ccccccccccchhhcccCcccC
Q 013278 122 CESLVSLKLDFGNREHQGVLNL----PTCVGFSRLKSLDLQHV-ESLD----------ISTTSLKYLTVDEFLLSEPKGL 186 (446)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~l~~----p~~~~~~~L~~L~L~~~-~~~~----------~~~~~L~~L~l~~~~~~~~~~~ 186 (446)
++.|+.|++.+|. .+.. +....+++|++|++.++ .... ..|++|+.|.+..
T Consensus 187 ~~~L~~l~l~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~--------- 252 (482)
T KOG1947|consen 187 CPLLKRLSLSGCS-----KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG--------- 252 (482)
T ss_pred CchhhHhhhcccc-----cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh---------
Confidence 6778888888773 1121 23346778888888762 1111 1456666666644
Q ss_pred ccch-hhhhhHHHhhhccccccccCcccccccccccc-cC--CcceEEEeccccceEEEeeeecCCCCCCCceEEEecCc
Q 013278 187 RSCK-VICESLEALKLHFGREIDSSPLLENLKMDSCC-FP--DLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSN 262 (446)
Q Consensus 187 ~~~~-~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~-~~--~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~ 262 (446)
|. ..+.++.. +...||.||.|.+.+|. .+ ++..+.-.+++|++|++.+|...+ +.++..+...+|+
T Consensus 253 --~~~isd~~l~~-------l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-d~~l~~~~~~c~~ 322 (482)
T KOG1947|consen 253 --CGLVTDIGLSA-------LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-DSGLEALLKNCPN 322 (482)
T ss_pred --hhccCchhHHH-------HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-HHHHHHHHHhCcc
Confidence 22 11245555 66668888888877776 22 222222334778888888776543 2223333444666
Q ss_pred eeeEEEec
Q 013278 263 LESFNIFA 270 (446)
Q Consensus 263 L~~L~~~~ 270 (446)
|+.|.+.+
T Consensus 323 l~~l~~~~ 330 (482)
T KOG1947|consen 323 LRELKLLS 330 (482)
T ss_pred hhhhhhhh
Confidence 66655444
No 52
>PLN03150 hypothetical protein; Provisional
Probab=93.95 E-value=0.034 Score=59.67 Aligned_cols=76 Identities=21% Similarity=0.191 Sum_probs=56.7
Q ss_pred ceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccccccchhhcccCcccCccchhhhhh
Q 013278 125 LVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEPKGLRSCKVICES 195 (446)
Q Consensus 125 L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 195 (446)
++.|+|+++ .+.. | ....+++|+.|+|+++.+.+ ..+++|+.|+++. ..
T Consensus 420 v~~L~L~~n------~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~----------------N~ 477 (623)
T PLN03150 420 IDGLGLDNQ------GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY----------------NS 477 (623)
T ss_pred EEEEECCCC------CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCC----------------CC
Confidence 778888888 5543 3 34578899999999988764 3688889888877 33
Q ss_pred HHHhhhccccccccCcccccccccccccCC
Q 013278 196 LEALKLHFGREIDSSPLLENLKMDSCCFPD 225 (446)
Q Consensus 196 l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~ 225 (446)
+ .+..++.+..+++|+.|+|.+|.+.+
T Consensus 478 l---sg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 478 F---NGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred C---CCCCchHHhcCCCCCEEECcCCcccc
Confidence 2 23344467889999999999998654
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=93.89 E-value=0.024 Score=54.21 Aligned_cols=38 Identities=24% Similarity=0.635 Sum_probs=35.5
Q ss_pred CCCCCCCCC----HHHHHHHhcCCChHHHHhhhhcchhhhhh
Q 013278 26 DGDRLSNLP----EPIIHHIFSFLETIDVVRASAVSRKWRYL 63 (446)
Q Consensus 26 ~~d~is~LP----deiL~~Ils~Lp~~d~~rts~lSrrWr~l 63 (446)
..|.|+.|| |+|-..|||||+..++..+-.|||+|+++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 368899999 99999999999999999999999999975
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.78 E-value=0.0081 Score=55.64 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=39.3
Q ss_pred ccccCcccccccccccccCCcceEEEe--ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecC
Q 013278 206 EIDSSPLLENLKMDSCCFPDLKILDIS--SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAP 271 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~~~l~i~--~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~ 271 (446)
++..||+|++|.+.++....+..+.-- -.+|++|.+..|....-+..-..+..-.|+|.+|+..+.
T Consensus 86 l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 86 LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 666779999999988875543333211 156778888887654311112234445677777766554
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.57 E-value=0.015 Score=59.81 Aligned_cols=40 Identities=25% Similarity=0.247 Sum_probs=33.1
Q ss_pred CCCCCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhhhcc
Q 013278 27 GDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLS 66 (446)
Q Consensus 27 ~d~is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~lw~~ 66 (446)
.+.....|++....+....+..+...+..+.++|......
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 3556678899999999999999998899999999887544
No 56
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.22 E-value=0.064 Score=53.09 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHhcCCCh-HHHHhhhhcchhhhhhhcc
Q 013278 29 RLSNLPEPIIHHIFSFLET-IDVVRASAVSRKWRYLWLS 66 (446)
Q Consensus 29 ~is~LPdeiL~~Ils~Lp~-~d~~rts~lSrrWr~lw~~ 66 (446)
.+++||+|+|..|..+||. -|.+|.+.|||.||..-..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4789999999999999975 7999999999999997543
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=92.63 E-value=0.022 Score=53.94 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=12.1
Q ss_pred ecCceeeEEEecCCCC
Q 013278 259 ACSNLESFNIFAPLLP 274 (446)
Q Consensus 259 ~ap~L~~L~~~~~~~~ 274 (446)
+.|.|+.+.+.|+...
T Consensus 397 ~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 397 NLPCLETLRLTGNPLA 412 (490)
T ss_pred cccHHHHHhhcCCCcc
Confidence 5688888888887654
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.77 E-value=0.036 Score=51.45 Aligned_cols=109 Identities=20% Similarity=0.107 Sum_probs=64.7
Q ss_pred ccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCce----eecCC
Q 013278 206 EIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDF----TLESL 281 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~----~l~~~ 281 (446)
+....-.|+.|++.++..+....+ -..|+||.|.++++.+.. ..++......+|+|+++.++|+....+ .+..+
T Consensus 38 l~d~~~~le~ls~~n~gltt~~~~-P~Lp~LkkL~lsdn~~~~-~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLTNF-PKLPKLKKLELSDNYRRV-SGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceeecccC-CCcchhhhhcccCCcccc-cccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 445566788888888864332211 124799999999994332 235566667789999999999976532 12334
Q ss_pred CCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEE
Q 013278 282 NSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKL 322 (446)
Q Consensus 282 p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l 322 (446)
.+|..+.+..+...+. .......+.-+++++.|.-
T Consensus 116 ~nL~~Ldl~n~~~~~l------~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNL------DDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcccCCcccc------ccHHHHHHHHhhhhccccc
Confidence 4555555555433221 1112445555666666653
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=91.75 E-value=0.011 Score=62.11 Aligned_cols=78 Identities=23% Similarity=0.222 Sum_probs=47.8
Q ss_pred cCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCce-eecCCCCceEE
Q 013278 209 SSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDF-TLESLNSLQNA 287 (446)
Q Consensus 209 ~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~-~l~~~p~L~~l 287 (446)
-.|.||.|+|++|++.....+ ...++||+|+|++|.... +..+...+-.|..|.++++..... -+.++.+|+.+
T Consensus 185 ll~ale~LnLshNk~~~v~~L-r~l~~LkhLDlsyN~L~~----vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~L 259 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVDNL-RRLPKLKHLDLSYNCLRH----VPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGL 259 (1096)
T ss_pred HHHHhhhhccchhhhhhhHHH-Hhcccccccccccchhcc----ccccchhhhhheeeeecccHHHhhhhHHhhhhhhcc
Confidence 357788888888876554422 235888888888887532 444444445577777777654321 23455556555
Q ss_pred EEEE
Q 013278 288 FIFL 291 (446)
Q Consensus 288 ~l~~ 291 (446)
++..
T Consensus 260 Dlsy 263 (1096)
T KOG1859|consen 260 DLSY 263 (1096)
T ss_pred chhH
Confidence 5543
No 60
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=91.33 E-value=0.14 Score=48.81 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=32.3
Q ss_pred CCCCCCCCCHHHHHHHhc-----CCChHHHHhhhhcchhhhhh
Q 013278 26 DGDRLSNLPEPIIHHIFS-----FLETIDVVRASAVSRKWRYL 63 (446)
Q Consensus 26 ~~d~is~LPdeiL~~Ils-----~Lp~~d~~rts~lSrrWr~l 63 (446)
..+.|+.||||||..||. .|+.++..++|+|||.|+..
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 345588999999999994 56789999999999999864
No 61
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=91.32 E-value=0.032 Score=61.81 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=10.1
Q ss_pred hcCCCCcEEEEEecC
Q 013278 369 NHSPNLEVLTIYFDS 383 (446)
Q Consensus 369 ~~~P~Le~L~l~~~~ 383 (446)
...|+|+.|.+....
T Consensus 767 ~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCR 781 (889)
T ss_pred hccCcccEEEEeccc
Confidence 356777777777655
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.43 E-value=0.078 Score=53.45 Aligned_cols=165 Identities=22% Similarity=0.273 Sum_probs=96.2
Q ss_pred cCCCccEEEeeceEecCc-----cc-cccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCccccccccccc
Q 013278 148 GFSRLKSLDLQHVESLDI-----ST-TSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSC 221 (446)
Q Consensus 148 ~~~~L~~L~L~~~~~~~~-----~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c 221 (446)
.++.++.|.+..+.+... .. ++|+.|++.+ ..+..+. .-+..+|.|+.|.+.+|
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~----------------N~i~~l~----~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD----------------NKIESLP----SPLRNLPNLKNLDLSFN 173 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccc----------------cchhhhh----hhhhccccccccccCCc
Confidence 445667777766665551 23 2566666666 5555410 02578899999999988
Q ss_pred ccCCcceEEEeccccceEEEeeeecCCCCCCCceEEEecCc-eeeEEEecCC-CCc-eeecCCCCceEEEEEEEeccchh
Q 013278 222 CFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSN-LESFNIFAPL-LPD-FTLESLNSLQNAFIFLETIGEYM 298 (446)
Q Consensus 222 ~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~-L~~L~~~~~~-~~~-~~l~~~p~L~~l~l~~~~~~~~~ 298 (446)
............+.|+.|.++++.... +.. .+..++ |++|.+.+.. ... ..+.++..+..+.+.....
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~----l~~-~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~---- 244 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISD----LPP-EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL---- 244 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCcccc----Cch-hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee----
Confidence 755443333256788888888887532 111 112444 8888887773 211 1233444444444221100
Q ss_pred hhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEee
Q 013278 299 EAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVT 355 (446)
Q Consensus 299 ~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~ 355 (446)
......+..+++++.|.++...+..+ . .++.+.+++.|++...
T Consensus 245 ------~~~~~~~~~l~~l~~L~~s~n~i~~i------~--~~~~~~~l~~L~~s~n 287 (394)
T COG4886 245 ------EDLPESIGNLSNLETLDLSNNQISSI------S--SLGSLTNLRELDLSGN 287 (394)
T ss_pred ------eeccchhccccccceecccccccccc------c--cccccCccCEEeccCc
Confidence 00135667788889998887766432 1 1567788888888764
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.69 E-value=0.16 Score=51.17 Aligned_cols=164 Identities=23% Similarity=0.218 Sum_probs=90.4
Q ss_pred CCCceEEEeccccccccccccC-CCcc-cC-CCccEEEeeceEecC-----ccccccccccchhhcccCcccCccchhhh
Q 013278 122 CESLVSLKLDFGNREHQGVLNL-PTCV-GF-SRLKSLDLQHVESLD-----ISTTSLKYLTVDEFLLSEPKGLRSCKVIC 193 (446)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~l~~-p~~~-~~-~~L~~L~L~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 193 (446)
.+.++.|.+.++ .+.. +... .+ ++|+.|++.++.+.. ..+|.|+.|.+++
T Consensus 115 ~~~l~~L~l~~n------~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~---------------- 172 (394)
T COG4886 115 LTNLTSLDLDNN------NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF---------------- 172 (394)
T ss_pred ccceeEEecCCc------ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC----------------
Confidence 356788888877 5544 3333 34 278888888887665 3688888888877
Q ss_pred hhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCC
Q 013278 194 ESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLL 273 (446)
Q Consensus 194 ~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~ 273 (446)
..+..+ +......+.|+.|++.++.........-....|++|.+.++.... .....-...++..+.+.+...
T Consensus 173 N~l~~l----~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~----~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 173 NDLSDL----PKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE----LLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred chhhhh----hhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee----cchhhhhcccccccccCCcee
Confidence 455441 112237788888888888744322111012348888887773211 111122334444444333332
Q ss_pred Cc--eeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechh
Q 013278 274 PD--FTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTL 326 (446)
Q Consensus 274 ~~--~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 326 (446)
.. -.+..++.++.+++....... +.. +..+.+++.|++++..
T Consensus 245 ~~~~~~~~~l~~l~~L~~s~n~i~~----------i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 245 EDLPESIGNLSNLETLDLSNNQISS----------ISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred eeccchhccccccceeccccccccc----------ccc-ccccCccCEEeccCcc
Confidence 22 234455666666665431111 011 6667777888777643
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.90 E-value=0.49 Score=42.58 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=45.2
Q ss_pred CCCCceEEEeccccccccccccC--CCc-ccCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHH
Q 013278 121 TCESLVSLKLDFGNREHQGVLNL--PTC-VGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLE 197 (446)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~l~~--p~~-~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 197 (446)
..+.|..|.|.++ .+.. |.. ..+|+|++|.|.++.+.. + ..+.
T Consensus 62 ~l~rL~tLll~nN------rIt~I~p~L~~~~p~l~~L~LtnNsi~~----------l------------------~dl~ 107 (233)
T KOG1644|consen 62 HLPRLHTLLLNNN------RITRIDPDLDTFLPNLKTLILTNNSIQE----------L------------------GDLD 107 (233)
T ss_pred CccccceEEecCC------cceeeccchhhhccccceEEecCcchhh----------h------------------hhcc
Confidence 4678999999998 6654 543 367899999999887654 1 2222
Q ss_pred HhhhccccccccCcccccccccccccC
Q 013278 198 ALKLHFGREIDSSPLLENLKMDSCCFP 224 (446)
Q Consensus 198 ~~~~~~~~ll~~cp~Le~L~L~~c~~~ 224 (446)
=+..||.|++|++.++...
T Consensus 108 --------pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 108 --------PLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred --------hhccCCccceeeecCCchh
Confidence 2468999999999988743
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=87.16 E-value=1.3 Score=44.74 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=6.5
Q ss_pred CCccEEEeece
Q 013278 150 SRLKSLDLQHV 160 (446)
Q Consensus 150 ~~L~~L~L~~~ 160 (446)
++|++|++++|
T Consensus 94 ~nLe~L~Ls~C 104 (426)
T PRK15386 94 EGLEKLTVCHC 104 (426)
T ss_pred hhhhheEccCc
Confidence 35666666655
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.83 E-value=0.075 Score=49.92 Aligned_cols=36 Identities=19% Similarity=0.059 Sum_probs=22.4
Q ss_pred CCceEEEeccccccccccccCC-CcccCCCccEEEeeceEecC
Q 013278 123 ESLVSLKLDFGNREHQGVLNLP-TCVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~p-~~~~~~~L~~L~L~~~~~~~ 164 (446)
.+.+.|+..|| .+.+. ....++.|+.|.|+-+.+..
T Consensus 19 ~~vkKLNcwg~------~L~DIsic~kMp~lEVLsLSvNkIss 55 (388)
T KOG2123|consen 19 ENVKKLNCWGC------GLDDISICEKMPLLEVLSLSVNKISS 55 (388)
T ss_pred HHhhhhcccCC------CccHHHHHHhcccceeEEeecccccc
Confidence 34556666666 55553 23467777777777776655
No 67
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=86.21 E-value=0.34 Score=47.84 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=49.1
Q ss_pred cccCCCccEEEeeceEecCc------cccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCccccccccc
Q 013278 146 CVGFSRLKSLDLQHVESLDI------STTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMD 219 (446)
Q Consensus 146 ~~~~~~L~~L~L~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~ 219 (446)
+..+++|++|+|+++.++.. ....++.|.|++ +.++.+... ++.+...|+.|+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~----------------N~l~~v~~~---~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR----------------NKLEFVSSG---MFQGLSGLKTLSLY 330 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc----------------chHHHHHHH---hhhccccceeeeec
Confidence 34678888888888877652 455566666666 444442222 56667777778887
Q ss_pred ccccCCcceEEEec-cccceEEEeeeec
Q 013278 220 SCCFPDLKILDISS-NSLKSLTLERIEF 246 (446)
Q Consensus 220 ~c~~~~~~~l~i~~-~~Lr~L~l~~~~~ 246 (446)
+++++......+.. .+|.+|.+-.+.+
T Consensus 331 ~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 331 DNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CCeeEEEecccccccceeeeeehccCcc
Confidence 77644332222222 4566666665544
No 68
>PF13013 F-box-like_2: F-box-like domain
Probab=85.04 E-value=0.68 Score=37.44 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHHHhcCCChHHHHhhhhcch--hh-hhh-hccc
Q 013278 29 RLSNLPEPIIHHIFSFLETIDVVRASAVSR--KW-RYL-WLSI 67 (446)
Q Consensus 29 ~is~LPdeiL~~Ils~Lp~~d~~rts~lSr--rW-r~l-w~~~ 67 (446)
.+.+||+||+..|+.+-...+....+..++ || ++. |..+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~~L 63 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWYLL 63 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999988877776 44 443 5443
No 69
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=84.40 E-value=0.28 Score=52.02 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=59.0
Q ss_pred cchHHHHHHHhccCCC-------------Ccc-----cHHHHHHh---hceeeeEc-ccccCCCccCCCCceEEEecccc
Q 013278 77 ICSNPLERWSLQTTNE-------------KFK-----DFVNWVLL---FQNGSVNE-PIKLPRSLVTCESLVSLKLDFGN 134 (446)
Q Consensus 77 ~~~~~v~~~L~~~~~~-------------~f~-----~i~~w~~~---l~~L~l~~-~~~lp~~l~~~~~L~~L~L~~~~ 134 (446)
+-.++++.+++.+.|. .|. .++.=++. ++.|++.- .+.=-..+..|++|++|+|+++
T Consensus 141 ~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN- 219 (1096)
T KOG1859|consen 141 NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYN- 219 (1096)
T ss_pred ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccc-
Confidence 3456778888777664 122 23322222 77777764 1111124567889999999988
Q ss_pred ccccccccC-CC--cccCCCccEEEeeceEecC----ccccccccccchh
Q 013278 135 REHQGVLNL-PT--CVGFSRLKSLDLQHVESLD----ISTTSLKYLTVDE 177 (446)
Q Consensus 135 ~~~~~~l~~-p~--~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~~ 177 (446)
.+.. |. ..++. |..|.|.++.+.. .++.+|..|++..
T Consensus 220 -----~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 220 -----CLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred -----hhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhH
Confidence 6655 42 33555 8999999888766 3567777777765
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=84.36 E-value=2 Score=43.32 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=15.4
Q ss_pred CCCceEEEeccccccccccccC-CCcccCC-CccEEEeece
Q 013278 122 CESLVSLKLDFGNREHQGVLNL-PTCVGFS-RLKSLDLQHV 160 (446)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~-~L~~L~L~~~ 160 (446)
|..+.+|++++| .+.. | .+| +|++|.+.+|
T Consensus 51 ~~~l~~L~Is~c------~L~sLP---~LP~sLtsL~Lsnc 82 (426)
T PRK15386 51 ARASGRLYIKDC------DIESLP---VLPNELTEITIENC 82 (426)
T ss_pred hcCCCEEEeCCC------CCcccC---CCCCCCcEEEccCC
Confidence 345566666665 3332 3 233 4666666554
No 71
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=84.17 E-value=0.12 Score=57.30 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=33.6
Q ss_pred CCCceEEEeccccccccccccC-CCcc-cCCCccEEEeeceEecC-----ccccccccccchh
Q 013278 122 CESLVSLKLDFGNREHQGVLNL-PTCV-GFSRLKSLDLQHVESLD-----ISTTSLKYLTVDE 177 (446)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~l~~-p~~~-~~~~L~~L~L~~~~~~~-----~~~~~L~~L~l~~ 177 (446)
.+.|++|+|++|. .+.. |... .+-+|+.|+|+++.+.. +++..|.+|+++.
T Consensus 570 m~~LrVLDLs~~~-----~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 570 LPLLRVLDLSGNS-----SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred CcceEEEECCCCC-----ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence 6888888888762 3332 5443 57888888888877754 2455566666654
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=80.28 E-value=0.87 Score=47.81 Aligned_cols=40 Identities=38% Similarity=0.559 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhh
Q 013278 24 GEDGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYL 63 (446)
Q Consensus 24 ~~~~d~is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~l 63 (446)
....|.++.||-|+..+||++|+.++.+..+.+|+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 4568999999999999999999999999999999999875
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.63 E-value=0.96 Score=40.70 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=8.0
Q ss_pred CCHHHHHHHhcCC
Q 013278 33 LPEPIIHHIFSFL 45 (446)
Q Consensus 33 LPdeiL~~Ils~L 45 (446)
++-.++..|-+.+
T Consensus 14 ~~~~~~~~~tQ~~ 26 (221)
T KOG3864|consen 14 LQRTILKRITQIL 26 (221)
T ss_pred hHHHHHHHHHHcc
Confidence 4555666666666
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=68.69 E-value=2.3 Score=43.19 Aligned_cols=40 Identities=23% Similarity=0.173 Sum_probs=30.4
Q ss_pred ccCCCCceEEEeccccccccccccCC-C-cccCCCccEEEeeceEecC
Q 013278 119 LVTCESLVSLKLDFGNREHQGVLNLP-T-CVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 119 l~~~~~L~~L~L~~~~~~~~~~l~~p-~-~~~~~~L~~L~L~~~~~~~ 164 (446)
+..+.+|+.|+|..+ .+... . ...+++|++|+|+++.+.+
T Consensus 91 l~~~~~l~~l~l~~n------~i~~i~~~l~~~~~L~~L~ls~N~I~~ 132 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN------KIEKIENLLSSLVNLQVLDLSFNKITK 132 (414)
T ss_pred cccccceeeeecccc------chhhcccchhhhhcchheecccccccc
Confidence 345678888998888 66653 3 4578899999999888876
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=66.93 E-value=5.2 Score=37.90 Aligned_cols=145 Identities=12% Similarity=-0.001 Sum_probs=79.8
Q ss_pred eccccceEEEeeeecCCC-CCCCceEEEecCceeeEEEecCCCCce----------------eecCCCCceEEEEEEEec
Q 013278 232 SSNSLKSLTLERIEFGGD-ELDNYKLKIACSNLESFNIFAPLLPDF----------------TLESLNSLQNAFIFLETI 294 (446)
Q Consensus 232 ~~~~Lr~L~l~~~~~~~~-~~~~~~~~i~ap~L~~L~~~~~~~~~~----------------~l~~~p~L~~l~l~~~~~ 294 (446)
.+|+|+...++++.+... ...+..+...+..|+.|.+..+.+..+ ...+.|.|+.+...-.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-- 167 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-- 167 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc--
Confidence 468999999999987641 112333455678899999987755322 1234566666554322
Q ss_pred cchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcc-cHHhHHHHhhcCCC
Q 013278 295 GEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEW-TVPLIIRLLNHSPN 373 (446)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~-~~l~l~~lL~~~P~ 373 (446)
....++ ..-....+.+-.+++.+.+..+.+..-. +.......+...++|+.|+|..+.... ....+...+...|.
T Consensus 168 -Rlengs--~~~~a~~l~sh~~lk~vki~qNgIrpeg-v~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 168 -RLENGS--KELSAALLESHENLKEVKIQQNGIRPEG-VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred -hhccCc--HHHHHHHHHhhcCceeEEeeecCcCcch-hHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 111110 0012445555567788887766553200 000011123356678888887765432 22223666677777
Q ss_pred CcEEEEEec
Q 013278 374 LEVLTIYFD 382 (446)
Q Consensus 374 Le~L~l~~~ 382 (446)
|..|.+.-+
T Consensus 244 lrEL~lnDC 252 (388)
T COG5238 244 LRELRLNDC 252 (388)
T ss_pred hhhccccch
Confidence 887777554
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=66.81 E-value=3.9 Score=21.06 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=6.0
Q ss_pred CccEEEeeceEec
Q 013278 151 RLKSLDLQHVESL 163 (446)
Q Consensus 151 ~L~~L~L~~~~~~ 163 (446)
+|++|+|++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666666666543
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=65.55 E-value=2.6 Score=42.85 Aligned_cols=79 Identities=24% Similarity=0.267 Sum_probs=57.8
Q ss_pred ccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecCc----cccccccccchhhcccCcccCccchhhh
Q 013278 119 LVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLDI----STTSLKYLTVDEFLLSEPKGLRSCKVIC 193 (446)
Q Consensus 119 l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 193 (446)
+..+++|++|+|+++ .+.. .....++.|+.|++.++.+.+. .+++|+.+++++
T Consensus 114 l~~~~~L~~L~ls~N------~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~---------------- 171 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFN------KITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSY---------------- 171 (414)
T ss_pred hhhhhcchheecccc------ccccccchhhccchhhheeccCcchhccCCccchhhhcccCCc----------------
Confidence 456899999999999 6665 4455677899999999988772 477888888877
Q ss_pred hhHHHhhhccccc-cccCccccccccccccc
Q 013278 194 ESLEALKLHFGRE-IDSSPLLENLKMDSCCF 223 (446)
Q Consensus 194 ~~l~~~~~~~~~l-l~~cp~Le~L~L~~c~~ 223 (446)
..+..+.. . +..+..|+.+.+.++..
T Consensus 172 n~i~~ie~----~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 172 NRIVDIEN----DELSELISLEELDLGGNSI 198 (414)
T ss_pred chhhhhhh----hhhhhccchHHHhccCCch
Confidence 44333211 1 36788889898888763
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.18 E-value=2.8 Score=37.80 Aligned_cols=40 Identities=23% Similarity=0.052 Sum_probs=18.2
Q ss_pred CCCCceEEEeccccccccccccCCCcccCCCccEEEeeceE
Q 013278 121 TCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHVE 161 (446)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~l~~p~~~~~~~L~~L~L~~~~ 161 (446)
.+++++.|.+.+|...+...+..-. ..+++|+.|+|++|.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCP 162 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCC
Confidence 3455666666666311111111111 145666666666554
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=60.69 E-value=3.8 Score=23.58 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=10.3
Q ss_pred Ccccccccccccc
Q 013278 210 SPLLENLKMDSCC 222 (446)
Q Consensus 210 cp~Le~L~L~~c~ 222 (446)
||+|+.|+|.+|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 6788888888886
No 80
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=50.61 E-value=12 Score=29.34 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCCCCCCHHHHHHHhcCCChHHHHh
Q 013278 28 DRLSNLPEPIIHHIFSFLETIDVVR 52 (446)
Q Consensus 28 d~is~LPdeiL~~Ils~Lp~~d~~r 52 (446)
..++.||-||...|+++|+-+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999998754
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=48.50 E-value=9.1 Score=21.34 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=9.7
Q ss_pred CCccEEEeeceEecC
Q 013278 150 SRLKSLDLQHVESLD 164 (446)
Q Consensus 150 ~~L~~L~L~~~~~~~ 164 (446)
++|++|+|+++.+.+
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 577788888777766
No 82
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=46.02 E-value=4.3 Score=42.23 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=21.1
Q ss_pred ccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEec
Q 013278 114 KLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESL 163 (446)
Q Consensus 114 ~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~ 163 (446)
.+|..+.+...|+.|+|+.+ .+.. |....+=-|+.|-+..+.++
T Consensus 112 ~ip~~i~~L~~lt~l~ls~N------qlS~lp~~lC~lpLkvli~sNNkl~ 156 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSN------QLSHLPDGLCDLPLKVLIVSNNKLT 156 (722)
T ss_pred ecchhhhhhhHHHHhhhccc------hhhcCChhhhcCcceeEEEecCccc
Confidence 34444444555555555555 3333 33333344555555555443
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=36.26 E-value=26 Score=19.13 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=9.7
Q ss_pred CccEEEeeceEecC
Q 013278 151 RLKSLDLQHVESLD 164 (446)
Q Consensus 151 ~L~~L~L~~~~~~~ 164 (446)
+|++|+|++|.+..
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 47777777776653
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=26.67 E-value=39 Score=19.03 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=10.5
Q ss_pred CCCccEEEeeceEecC
Q 013278 149 FSRLKSLDLQHVESLD 164 (446)
Q Consensus 149 ~~~L~~L~L~~~~~~~ 164 (446)
+++|++|+|.++.+..
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00370 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 3567777777776554
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=26.67 E-value=39 Score=19.03 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=10.5
Q ss_pred CCCccEEEeeceEecC
Q 013278 149 FSRLKSLDLQHVESLD 164 (446)
Q Consensus 149 ~~~L~~L~L~~~~~~~ 164 (446)
+++|++|+|.++.+..
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00369 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 3567777777776554
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=25.50 E-value=39 Score=19.71 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=11.9
Q ss_pred CCccEEEeeceEecC
Q 013278 150 SRLKSLDLQHVESLD 164 (446)
Q Consensus 150 ~~L~~L~L~~~~~~~ 164 (446)
++|++|+|+++.+.+
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 468888888888876
No 87
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=25.27 E-value=20 Score=34.84 Aligned_cols=39 Identities=33% Similarity=0.489 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhhhcccc
Q 013278 30 LSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSIP 68 (446)
Q Consensus 30 is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~lw~~~p 68 (446)
+..+|+++++.|++++..+++++.+.+|+|-..+-...|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 347999999999999999999999999999876544333
No 88
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=22.68 E-value=27 Score=36.69 Aligned_cols=106 Identities=26% Similarity=0.225 Sum_probs=59.8
Q ss_pred ccccCCCccCCCCceEEEeccccccccccccC-CC-cccCCCccEEEeeceEecC-----ccccccccccchhhcccCcc
Q 013278 112 PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PT-CVGFSRLKSLDLQHVESLD-----ISTTSLKYLTVDEFLLSEPK 184 (446)
Q Consensus 112 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~-~~~~~~L~~L~L~~~~~~~-----~~~~~L~~L~l~~~~~~~~~ 184 (446)
...+|..+..|+ |+.|-++++ .+.. |. ....+.|..|+.+.|.+.+ +++.+|+.|.+..
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNN------kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR------- 198 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNN------KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR------- 198 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecC------ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-------
Confidence 455666655554 778888887 5544 32 2367788888888887665 3566666666655
Q ss_pred cCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeec
Q 013278 185 GLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEF 246 (446)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~ 246 (446)
+.+.. +++-+. |=.|..|++++++...+ .+++. ...|+.|.+.+|..
T Consensus 199 ---------n~l~~----lp~El~-~LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 199 ---------NHLED----LPEELC-SLPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred ---------hhhhh----CCHHHh-CCceeeeecccCceeec-chhhhhhhhheeeeeccCCC
Confidence 33333 222222 33466666666653211 11111 25666666666654
No 89
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=22.06 E-value=1.1e+02 Score=25.26 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=24.1
Q ss_pred ccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEec
Q 013278 346 NLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFD 382 (446)
Q Consensus 346 ~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~ 382 (446)
|=+..+|.+-+.+.|+ ..+++.||+|+.+.+-.+
T Consensus 18 nE~~VHlAFRPSN~Di---f~Lv~~CP~lk~iqiP~S 51 (131)
T PF08004_consen 18 NEEIVHLAFRPSNKDI---FSLVERCPNLKAIQIPPS 51 (131)
T ss_pred CceEEEEEecCcchHH---HHHHHhCCCCeEEeCChH
Confidence 4455566655556666 589999999999888543
Done!