Query 013278
Match_columns 446
No_of_seqs 202 out of 1953
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 07:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.8 6.8E-21 2.3E-25 200.3 6.8 368 26-439 5-445 (592)
2 2p1m_B Transport inhibitor res 99.8 9.8E-20 3.4E-24 191.4 8.5 262 27-322 3-345 (594)
3 2ast_B S-phase kinase-associat 99.8 2.1E-20 7E-25 182.6 2.9 274 27-375 6-299 (336)
4 4fmz_A Internalin; leucine ric 99.2 3.6E-11 1.2E-15 117.4 7.4 67 104-177 68-141 (347)
5 4fcg_A Uncharacterized protein 99.1 4.2E-11 1.4E-15 116.5 5.2 138 104-289 83-236 (328)
6 4fmz_A Internalin; leucine ric 99.1 6.7E-11 2.3E-15 115.5 6.3 154 104-290 46-207 (347)
7 2id5_A Lingo-1, leucine rich r 99.1 1.1E-10 3.8E-15 119.1 7.0 234 104-383 58-307 (477)
8 1o6v_A Internalin A; bacterial 99.1 1.2E-10 4E-15 118.8 6.4 52 119-176 108-164 (466)
9 2id5_A Lingo-1, leucine rich r 99.0 2E-11 7E-16 124.6 0.4 234 104-383 82-331 (477)
10 2z80_A TOLL-like receptor 2, v 99.0 1E-09 3.4E-14 107.5 11.9 262 114-428 45-329 (353)
11 2p1m_B Transport inhibitor res 99.0 3.3E-11 1.1E-15 126.2 1.3 240 104-380 132-440 (594)
12 3v47_A TOLL-like receptor 5B a 99.0 3.3E-10 1.1E-14 114.7 7.4 17 207-223 150-166 (455)
13 3v47_A TOLL-like receptor 5B a 99.0 5.4E-11 1.8E-15 120.5 1.0 105 261-383 275-382 (455)
14 3t6q_A CD180 antigen; protein- 99.0 3.8E-11 1.3E-15 126.3 -0.9 53 119-177 274-334 (606)
15 3o6n_A APL1; leucine-rich repe 99.0 5.1E-10 1.7E-14 111.2 6.3 259 104-428 71-362 (390)
16 3o53_A Protein LRIM1, AGAP0063 99.0 1.2E-11 3.9E-16 119.8 -5.7 229 104-381 36-271 (317)
17 3oja_A Leucine-rich immune mol 98.9 2.4E-11 8.3E-16 124.7 -3.9 228 104-380 36-270 (487)
18 1xku_A Decorin; proteoglycan, 98.9 8.8E-11 3E-15 114.0 0.2 257 104-414 54-328 (330)
19 1xku_A Decorin; proteoglycan, 98.9 2.7E-10 9.3E-15 110.5 3.5 221 113-383 44-274 (330)
20 3ogk_B Coronatine-insensitive 98.9 9.3E-10 3.2E-14 115.2 7.1 181 104-323 140-350 (592)
21 4fcg_A Uncharacterized protein 98.9 7E-10 2.4E-14 107.8 5.8 198 122-383 80-288 (328)
22 3zyi_A Leucine-rich repeat-con 98.9 6.7E-11 2.3E-15 120.1 -1.7 220 104-370 77-317 (452)
23 3zyj_A Leucine-rich repeat-con 98.9 6.7E-11 2.3E-15 119.7 -1.9 220 104-370 66-306 (440)
24 1o6v_A Internalin A; bacterial 98.9 7.2E-10 2.5E-14 112.9 5.7 146 207-383 239-386 (466)
25 3oja_B Anopheles plasmodium-re 98.9 8.5E-10 2.9E-14 116.0 6.2 250 104-416 77-356 (597)
26 1ogq_A PGIP-2, polygalacturona 98.9 2.7E-11 9.2E-16 117.0 -5.3 68 104-177 52-134 (313)
27 3o6n_A APL1; leucine-rich repe 98.9 5.6E-10 1.9E-14 110.9 4.1 276 104-439 47-348 (390)
28 3t6q_A CD180 antigen; protein- 98.9 1.2E-10 4.1E-15 122.5 -1.1 38 343-382 348-386 (606)
29 2ft3_A Biglycan; proteoglycan, 98.9 2.2E-10 7.6E-15 111.3 0.8 156 104-290 56-225 (332)
30 2z63_A TOLL-like receptor 4, v 98.9 2.1E-10 7.2E-15 119.5 0.7 222 113-383 272-505 (570)
31 3rgz_A Protein brassinosteroid 98.9 1.4E-10 4.7E-15 125.7 -1.1 68 104-177 370-451 (768)
32 3zyi_A Leucine-rich repeat-con 98.9 5.5E-10 1.9E-14 113.3 3.4 224 113-383 67-301 (452)
33 2z80_A TOLL-like receptor 2, v 98.9 1.8E-10 6.1E-15 113.0 -0.5 242 104-383 54-312 (353)
34 3zyj_A Leucine-rich repeat-con 98.9 6.1E-10 2.1E-14 112.6 3.1 224 113-383 56-290 (440)
35 3rgz_A Protein brassinosteroid 98.9 2.4E-10 8.3E-15 123.8 0.2 57 115-177 92-160 (768)
36 3vq2_A TLR4, TOLL-like recepto 98.9 3E-10 1E-14 119.3 0.9 152 208-383 282-435 (606)
37 3oja_B Anopheles plasmodium-re 98.9 9.8E-10 3.4E-14 115.6 4.4 270 104-439 53-354 (597)
38 3vq2_A TLR4, TOLL-like recepto 98.9 3E-10 1E-14 119.4 0.3 235 104-383 287-532 (606)
39 3j0a_A TOLL-like receptor 5; m 98.8 2.8E-09 9.6E-14 116.6 7.0 105 261-383 266-373 (844)
40 1ozn_A Reticulon 4 receptor; N 98.8 5.8E-10 2E-14 105.8 1.2 49 123-177 32-89 (285)
41 2z63_A TOLL-like receptor 4, v 98.8 1.7E-09 5.7E-14 112.6 4.7 236 104-383 284-529 (570)
42 2z66_A Variable lymphocyte rec 98.8 2.2E-10 7.4E-15 109.9 -2.0 16 207-222 122-137 (306)
43 2z7x_B TOLL-like receptor 1, v 98.8 2.9E-09 9.9E-14 109.8 5.7 66 104-177 71-147 (520)
44 2ft3_A Biglycan; proteoglycan, 98.8 3.3E-10 1.1E-14 110.1 -1.5 230 104-381 80-329 (332)
45 3bz5_A Internalin-J, INLJ; leu 98.8 3.2E-09 1.1E-13 108.0 5.5 76 234-327 170-245 (457)
46 4eco_A Uncharacterized protein 98.8 8.8E-10 3E-14 116.8 1.0 62 313-383 511-577 (636)
47 4ecn_A Leucine-rich repeat pro 98.8 1.5E-09 5.1E-14 118.4 2.8 48 124-177 549-604 (876)
48 3j0a_A TOLL-like receptor 5; m 98.8 5.2E-09 1.8E-13 114.5 7.1 114 104-246 268-393 (844)
49 2ca6_A RAN GTPase-activating p 98.8 1.9E-10 6.5E-15 114.2 -4.0 169 206-383 117-314 (386)
50 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 3.2E-09 1.1E-13 73.8 3.4 39 26-64 5-43 (53)
51 3g06_A SSPH2 (leucine-rich rep 98.8 2.2E-09 7.7E-14 113.0 3.7 234 104-415 42-294 (622)
52 2z66_A Variable lymphocyte rec 98.8 1.1E-09 3.7E-14 105.0 1.0 208 114-383 21-234 (306)
53 1h6u_A Internalin H; cell adhe 98.8 3.6E-09 1.2E-13 101.8 4.6 77 207-290 103-181 (308)
54 3bz5_A Internalin-J, INLJ; leu 98.8 1.2E-09 4.3E-14 111.0 1.3 29 261-289 212-240 (457)
55 2ast_B S-phase kinase-associat 98.8 3.2E-10 1.1E-14 110.0 -3.0 171 104-325 95-282 (336)
56 1ogq_A PGIP-2, polygalacturona 98.7 3.9E-10 1.3E-14 108.8 -2.8 68 104-177 78-158 (313)
57 3g06_A SSPH2 (leucine-rich rep 98.7 5.5E-09 1.9E-13 110.0 4.8 223 104-383 63-295 (622)
58 4eco_A Uncharacterized protein 98.7 4.6E-09 1.6E-13 111.3 3.6 231 104-383 208-499 (636)
59 1ozn_A Reticulon 4 receptor; N 98.7 2.6E-09 8.8E-14 101.3 1.3 55 104-164 34-95 (285)
60 1h6u_A Internalin H; cell adhe 98.7 7.4E-09 2.5E-13 99.5 4.5 177 104-326 43-228 (308)
61 4ecn_A Leucine-rich repeat pro 98.7 2.7E-09 9.4E-14 116.3 1.3 161 115-291 440-628 (876)
62 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 5E-08 1.7E-12 101.6 10.2 65 312-383 350-414 (562)
63 2z81_A CD282 antigen, TOLL-lik 98.7 3.6E-08 1.2E-12 102.1 9.0 220 123-382 26-261 (549)
64 3oja_A Leucine-rich immune mol 98.7 1.3E-09 4.3E-14 111.9 -2.4 205 121-382 32-247 (487)
65 3o53_A Protein LRIM1, AGAP0063 98.6 7.1E-09 2.4E-13 100.0 2.6 229 122-435 33-267 (317)
66 1ziw_A TOLL-like receptor 3; i 98.6 4.2E-09 1.4E-13 112.2 0.2 38 118-161 324-364 (680)
67 2z7x_B TOLL-like receptor 1, v 98.6 1.4E-07 5E-12 96.9 11.6 125 113-273 13-150 (520)
68 2z62_A TOLL-like receptor 4, v 98.6 1.1E-08 3.6E-13 96.6 2.7 107 113-246 20-136 (276)
69 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 1.6E-08 5.6E-13 105.3 4.2 65 308-383 396-461 (562)
70 1ziw_A TOLL-like receptor 3; i 98.6 3.6E-09 1.2E-13 112.8 -1.9 68 310-383 267-340 (680)
71 3rfs_A Internalin B, repeat mo 98.6 1.1E-08 3.7E-13 96.5 1.6 40 310-355 176-215 (272)
72 2o6q_A Variable lymphocyte rec 98.6 1.4E-08 4.7E-13 95.6 2.2 133 206-356 80-216 (270)
73 2z81_A CD282 antigen, TOLL-lik 98.6 1.9E-08 6.4E-13 104.3 3.1 219 122-383 4-234 (549)
74 3rfs_A Internalin B, repeat mo 98.5 1.9E-08 6.5E-13 94.8 2.2 108 207-326 105-216 (272)
75 4glp_A Monocyte differentiatio 98.5 1.6E-08 5.4E-13 97.2 1.4 163 104-290 93-280 (310)
76 1wwl_A Monocyte differentiatio 98.5 2.8E-08 9.6E-13 95.6 2.8 147 104-274 97-266 (312)
77 1z7x_W Ribonuclease inhibitor; 98.5 3E-10 1E-14 115.2 -11.9 251 104-383 30-324 (461)
78 1p9a_G Platelet glycoprotein I 98.5 1.5E-08 5E-13 96.7 0.5 206 120-372 7-224 (290)
79 2o6q_A Variable lymphocyte rec 98.5 1.5E-08 5.2E-13 95.3 0.6 196 123-383 16-216 (270)
80 2ca6_A RAN GTPase-activating p 98.5 4.8E-09 1.6E-13 104.0 -3.1 227 115-383 24-285 (386)
81 1z7x_W Ribonuclease inhibitor; 98.5 3.3E-10 1.1E-14 114.8 -12.0 299 104-435 115-460 (461)
82 1p9a_G Platelet glycoprotein I 98.5 3.2E-08 1.1E-12 94.3 1.8 182 105-327 13-207 (290)
83 4glp_A Monocyte differentiatio 98.4 8.6E-08 2.9E-12 92.0 3.8 158 104-289 119-301 (310)
84 1wwl_A Monocyte differentiatio 98.4 9E-08 3.1E-12 92.0 3.9 158 104-289 123-303 (312)
85 1h6t_A Internalin B; cell adhe 98.4 1.1E-07 3.8E-12 90.5 4.4 37 122-164 45-82 (291)
86 4ezg_A Putative uncharacterize 98.4 7.6E-08 2.6E-12 86.0 2.9 53 104-163 46-101 (197)
87 1h6t_A Internalin B; cell adhe 98.4 1.5E-07 5.3E-12 89.5 4.5 67 104-177 48-121 (291)
88 1jl5_A Outer protein YOPM; leu 98.4 7.9E-08 2.7E-12 97.6 1.7 207 104-383 155-368 (454)
89 4ezg_A Putative uncharacterize 98.3 8.6E-08 2.9E-12 85.6 1.0 38 121-164 42-80 (197)
90 2z62_A TOLL-like receptor 4, v 98.3 5.3E-08 1.8E-12 91.7 -0.6 118 104-246 30-161 (276)
91 1m9s_A Internalin B; cell inva 98.3 1.8E-07 6.1E-12 98.3 3.1 153 104-290 45-205 (605)
92 2xwt_C Thyrotropin receptor; s 98.3 4.2E-07 1.4E-11 83.6 4.8 32 124-161 32-66 (239)
93 1jl5_A Outer protein YOPM; leu 98.3 3.3E-07 1.1E-11 92.9 4.5 207 104-383 133-348 (454)
94 3goz_A Leucine-rich repeat-con 98.3 3E-08 1E-12 97.5 -3.2 37 122-164 21-65 (362)
95 3m19_A Variable lymphocyte rec 98.3 1.5E-07 5.2E-12 87.3 1.5 55 310-370 150-207 (251)
96 3m19_A Variable lymphocyte rec 98.2 2.2E-07 7.6E-12 86.2 1.7 19 206-224 78-96 (251)
97 2xwt_C Thyrotropin receptor; s 98.2 1.9E-07 6.4E-12 85.9 1.1 123 104-274 33-169 (239)
98 4g8a_A TOLL-like receptor 4; l 98.2 5.5E-07 1.9E-11 94.4 3.1 40 207-246 120-160 (635)
99 1m9s_A Internalin B; cell inva 98.2 3.5E-07 1.2E-11 96.0 1.3 134 104-272 67-208 (605)
100 3cvr_A Invasion plasmid antige 98.1 2.1E-06 7.1E-11 89.4 6.7 128 104-274 61-193 (571)
101 2e31_A FBS1, F-box only protei 98.1 1.1E-06 3.7E-11 82.9 4.0 37 27-63 48-85 (297)
102 2ell_A Acidic leucine-rich nuc 98.1 4.2E-07 1.4E-11 78.8 0.9 36 123-164 24-63 (168)
103 1xeu_A Internalin C; cellular 98.1 2E-06 6.9E-11 80.5 5.1 101 120-272 38-139 (263)
104 4g8a_A TOLL-like receptor 4; l 98.1 2.6E-06 9E-11 89.2 6.1 123 123-291 52-182 (635)
105 2o6s_A Variable lymphocyte rec 98.1 5.6E-07 1.9E-11 80.9 0.3 134 123-288 28-171 (208)
106 2je0_A Acidic leucine-rich nuc 98.0 4.6E-07 1.6E-11 76.8 -0.8 19 206-224 83-101 (149)
107 1xeu_A Internalin C; cellular 98.0 1.1E-06 3.7E-11 82.3 0.8 113 104-246 43-162 (263)
108 3goz_A Leucine-rich repeat-con 98.0 2.8E-07 9.5E-12 90.5 -3.4 226 128-383 3-264 (362)
109 3cvr_A Invasion plasmid antige 98.0 3.2E-06 1.1E-10 87.9 3.9 182 123-358 59-243 (571)
110 2v9t_B SLIT homolog 2 protein 98.0 1.2E-06 4E-11 79.8 0.4 43 114-164 25-70 (220)
111 2ell_A Acidic leucine-rich nuc 97.9 1.5E-06 5E-11 75.3 0.6 87 148-274 22-108 (168)
112 3e4g_A ATP synthase subunit S, 97.9 1.6E-06 5.4E-11 75.7 0.7 92 112-246 50-151 (176)
113 4ay9_X Follicle-stimulating ho 97.9 2.5E-06 8.5E-11 83.2 0.9 218 113-381 22-255 (350)
114 1a9n_A U2A', U2A'; complex (nu 97.9 6.3E-07 2.2E-11 78.4 -3.3 124 120-292 16-150 (176)
115 3e6j_A Variable lymphocyte rec 97.8 4.4E-06 1.5E-10 76.4 2.1 104 123-273 40-147 (229)
116 3e6j_A Variable lymphocyte rec 97.8 6.4E-06 2.2E-10 75.3 3.2 124 104-273 42-171 (229)
117 2v9t_B SLIT homolog 2 protein 97.8 6.9E-06 2.4E-10 74.6 2.7 123 104-272 34-163 (220)
118 2je0_A Acidic leucine-rich nuc 97.8 1.1E-06 3.8E-11 74.4 -2.6 87 148-274 15-101 (149)
119 3l2o_B F-box only protein 4; s 97.8 5.2E-06 1.8E-10 77.5 1.2 34 30-63 5-38 (312)
120 2v70_A SLIT-2, SLIT homolog 2 97.8 5E-06 1.7E-10 75.5 0.9 130 114-291 25-162 (220)
121 2o6s_A Variable lymphocyte rec 97.8 8E-06 2.7E-10 73.2 2.2 17 148-164 26-42 (208)
122 1ds9_A Outer arm dynein; leuci 97.7 6E-07 2E-11 80.1 -5.5 83 118-246 43-127 (198)
123 2v70_A SLIT-2, SLIT homolog 2 97.7 1.2E-05 4E-10 73.1 2.6 124 104-273 34-165 (220)
124 2xot_A Amphoterin-induced prot 97.7 1.3E-05 4.4E-10 78.5 2.4 126 124-274 40-176 (361)
125 2ra8_A Uncharacterized protein 97.7 7.7E-06 2.6E-10 80.2 0.8 60 206-269 167-227 (362)
126 3un9_A NLR family member X1; l 97.6 7E-06 2.4E-10 80.9 -0.3 74 308-383 176-250 (372)
127 1a9n_A U2A', U2A'; complex (nu 97.6 9.3E-06 3.2E-10 70.8 0.0 125 104-272 21-151 (176)
128 1w8a_A SLIT protein; signaling 97.6 2.4E-05 8.2E-10 69.3 2.4 113 113-273 21-138 (192)
129 3v7d_B Cell division control p 97.5 2.5E-05 8.5E-10 78.3 1.8 41 25-65 10-50 (464)
130 2xot_A Amphoterin-induced prot 97.5 4.8E-05 1.7E-09 74.4 3.4 119 104-247 41-176 (361)
131 1dce_A Protein (RAB geranylger 97.4 2E-05 7E-10 82.0 0.1 35 124-164 442-477 (567)
132 3e4g_A ATP synthase subunit S, 97.4 1.5E-05 5.3E-10 69.4 -1.6 84 150-272 61-150 (176)
133 2ovr_B FBW7, F-BOX/WD repeat p 97.3 0.00016 5.6E-09 72.0 4.6 39 25-63 14-52 (445)
134 2wfh_A SLIT homolog 2 protein 97.3 5.2E-05 1.8E-09 67.3 0.7 36 123-164 31-68 (193)
135 2o6r_A Variable lymphocyte rec 97.2 8.5E-05 2.9E-09 64.6 1.9 41 206-246 71-112 (177)
136 2wfh_A SLIT homolog 2 protein 97.2 9.3E-05 3.2E-09 65.6 2.1 55 104-164 33-92 (193)
137 1p22_A F-BOX/WD-repeat protein 97.2 8.8E-05 3E-09 73.9 1.2 38 26-63 7-48 (435)
138 1w8a_A SLIT protein; signaling 97.1 7.2E-05 2.5E-09 66.2 0.4 103 126-274 11-115 (192)
139 1ds9_A Outer arm dynein; leuci 97.1 0.00012 4.2E-09 64.9 1.6 108 206-327 43-152 (198)
140 2o6r_A Variable lymphocyte rec 97.0 0.00034 1.1E-08 60.7 3.4 99 123-246 28-136 (177)
141 4b8c_D Glucose-repressible alc 97.0 0.00016 5.3E-09 77.6 0.9 103 117-246 218-328 (727)
142 3g39_A Variable lymphocyte rec 96.9 0.00038 1.3E-08 60.2 2.8 17 207-223 74-90 (170)
143 2r9u_A Variable lymphocyte rec 96.8 0.00057 1.9E-08 59.4 3.1 13 260-272 104-116 (174)
144 1dce_A Protein (RAB geranylger 96.8 0.00069 2.3E-08 70.4 3.7 67 104-177 443-517 (567)
145 2ra8_A Uncharacterized protein 96.7 0.00013 4.3E-09 71.5 -2.1 42 313-356 277-318 (362)
146 4b8c_D Glucose-repressible alc 96.7 0.00044 1.5E-08 74.1 1.6 96 104-225 226-330 (727)
147 3sb4_A Hypothetical leucine ri 96.6 0.0023 7.8E-08 61.4 5.6 63 309-382 244-307 (329)
148 2ifg_A High affinity nerve gro 96.5 0.0008 2.7E-08 65.0 2.1 44 114-164 23-70 (347)
149 3g39_A Variable lymphocyte rec 96.3 0.00062 2.1E-08 58.8 0.1 80 124-247 10-91 (170)
150 4ay9_X Follicle-stimulating ho 96.3 0.00081 2.8E-08 65.2 0.6 68 104-177 32-113 (350)
151 2r9u_A Variable lymphocyte rec 95.8 0.0077 2.6E-07 52.0 4.4 90 113-247 25-118 (174)
152 3un9_A NLR family member X1; l 95.3 0.0011 3.7E-08 65.1 -3.0 130 122-274 100-252 (372)
153 3sb4_A Hypothetical leucine ri 95.3 0.0077 2.6E-07 57.6 2.8 100 260-379 225-328 (329)
154 4fdw_A Leucine rich hypothetic 94.7 0.008 2.7E-07 59.5 1.2 94 104-221 137-236 (401)
155 1io0_A Tropomodulin; LRR prote 94.6 0.011 3.6E-07 51.7 1.6 19 206-224 31-50 (185)
156 1io0_A Tropomodulin; LRR prote 94.0 0.0062 2.1E-07 53.3 -1.3 44 121-164 34-79 (185)
157 3rw6_A Nuclear RNA export fact 92.0 0.071 2.4E-06 49.5 2.7 77 122-219 169-259 (267)
158 4fdw_A Leucine rich hypothetic 91.9 0.092 3.1E-06 51.7 3.5 233 104-383 115-356 (401)
159 2ifg_A High affinity nerve gro 91.5 0.026 8.8E-07 54.2 -1.0 84 144-246 25-115 (347)
160 3rw6_A Nuclear RNA export fact 87.5 0.095 3.3E-06 48.6 -0.4 20 206-225 191-210 (267)
161 4fs7_A Uncharacterized protein 84.2 0.17 5.7E-06 49.5 -0.6 56 146-221 158-218 (394)
162 4fs7_A Uncharacterized protein 53.9 4.1 0.00014 39.4 1.3 140 119-287 249-393 (394)
163 4gt6_A Cell surface protein; l 52.1 19 0.00066 34.5 5.9 53 120-176 285-342 (394)
164 1pgv_A TMD-1, tropomodulin TMD 46.1 6 0.00021 34.5 1.0 15 150-164 98-112 (197)
165 3rfe_A Platelet glycoprotein I 43.4 15 0.00052 29.3 3.0 36 123-164 31-69 (130)
166 1pgv_A TMD-1, tropomodulin TMD 40.9 3.1 0.00011 36.4 -1.8 42 206-247 65-111 (197)
167 4gt6_A Cell surface protein; l 38.1 20 0.0007 34.3 3.5 102 119-245 261-368 (394)
168 4h09_A Hypothetical leucine ri 34.4 21 0.00071 33.9 2.9 13 206-218 328-340 (379)
169 3rfe_A Platelet glycoprotein I 26.7 36 0.0012 27.0 2.6 15 150-164 31-45 (130)
170 4h09_A Hypothetical leucine ri 25.1 36 0.0012 32.1 2.7 13 206-218 305-317 (379)
171 2kwv_A RAD30 homolog B, DNA po 21.8 53 0.0018 21.0 2.0 21 24-44 15-35 (48)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=6.8e-21 Score=200.27 Aligned_cols=368 Identities=15% Similarity=0.102 Sum_probs=192.1
Q ss_pred CCCCCC----CCCHHHHHHHhcCC-ChHHHHhhhhcchhhhhhhcccc-eEEEecCCcchHHHHHHHhccCCC---C---
Q 013278 26 DGDRLS----NLPEPIIHHIFSFL-ETIDVVRASAVSRKWRYLWLSIP-YLNFNVHNICSNPLERWSLQTTNE---K--- 93 (446)
Q Consensus 26 ~~d~is----~LPdeiL~~Ils~L-p~~d~~rts~lSrrWr~lw~~~p-~l~~~~~~~~~~~v~~~L~~~~~~---~--- 93 (446)
+.||++ +|||||+.+||+|| |.+|+++++.|||||++++...+ .+.+.. .+......++.....- .
T Consensus 5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~L~~L~L~~ 82 (592)
T 3ogk_B 5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL--CYTATPDRLSRRFPNLRSLKLKG 82 (592)
T ss_dssp -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC--GGGSCHHHHHHHCTTCSEEEEEC
T ss_pred hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee--ccccChHHHHHhCCCCeEEEecC
Confidence 345554 89999999999999 89999999999999999864433 222221 1222233333222221 0
Q ss_pred ------c-------c-cHHHHHHh-------hceeeeEcc---cccCCCccC-CCC-ceEEEeccccccccccccC---C
Q 013278 94 ------F-------K-DFVNWVLL-------FQNGSVNEP---IKLPRSLVT-CES-LVSLKLDFGNREHQGVLNL---P 144 (446)
Q Consensus 94 ------f-------~-~i~~w~~~-------l~~L~l~~~---~~lp~~l~~-~~~-L~~L~L~~~~~~~~~~l~~---p 144 (446)
| . ....|+.. +++|++... ...+..+.. +++ |++|+|.+|. .+.. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~-----~~~~~~l~ 157 (592)
T 3ogk_B 83 KPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-----GFTTDGLL 157 (592)
T ss_dssp SCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE-----EEEHHHHH
T ss_pred CcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC-----CcCHHHHH
Confidence 0 0 22234432 566666541 011111112 333 6677776662 1111 1
Q ss_pred C-cccCCCccEEEeeceEecCc----------cccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCccc
Q 013278 145 T-CVGFSRLKSLDLQHVESLDI----------STTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLL 213 (446)
Q Consensus 145 ~-~~~~~~L~~L~L~~~~~~~~----------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~L 213 (446)
. ...+++|++|+|++|.+.+. ++++|++|++....++ . .....+.. ++..||+|
T Consensus 158 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~------~--~~~~~l~~-------~~~~~~~L 222 (592)
T 3ogk_B 158 SIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA------K--ISPKDLET-------IARNCRSL 222 (592)
T ss_dssp HHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS------S--CCHHHHHH-------HHHHCTTC
T ss_pred HHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC------c--cCHHHHHH-------HHhhCCCC
Confidence 1 12567777777777765442 3566777666541000 0 00033444 66677778
Q ss_pred ccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCc--eeecCCCCceEEEEEE
Q 013278 214 ENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPD--FTLESLNSLQNAFIFL 291 (446)
Q Consensus 214 e~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~--~~l~~~p~L~~l~l~~ 291 (446)
+.|+|.+|...+....-...++|+.|.+..+................++|+++.+.+..... ..+..+++|+.+++..
T Consensus 223 ~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp CEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETT
T ss_pred cEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCC
Confidence 88877777644432222223677777776532211001111222345678888776643221 2345678888888864
Q ss_pred EeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEe----------ecCcccH
Q 013278 292 ETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCV----------TTAEWTV 361 (446)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~----------~~~~~~~ 361 (446)
+. . . ...+..++..+++|+.|.+........ . ......+++|++|++.. + .....
T Consensus 303 ~~---l-~----~~~~~~~~~~~~~L~~L~L~~~~~~~~--l----~~~~~~~~~L~~L~L~~g~~~~~~~~~~-~~~~~ 367 (592)
T 3ogk_B 303 AL---L-E----TEDHCTLIQKCPNLEVLETRNVIGDRG--L----EVLAQYCKQLKRLRIERGADEQGMEDEE-GLVSQ 367 (592)
T ss_dssp CC---C-C----HHHHHHHHTTCTTCCEEEEEGGGHHHH--H----HHHHHHCTTCCEEEEECCCCSSTTSSTT-CCCCH
T ss_pred Cc---C-C----HHHHHHHHHhCcCCCEEeccCccCHHH--H----HHHHHhCCCCCEEEeecCcccccccccc-CccCH
Confidence 32 1 1 122356678899999999984322110 0 00123567899999984 2 12222
Q ss_pred HhHHHHhhcCCCCcEEEEEecCCCCCCCCCCCCCccccccccccceeEEecC---------CCHhHHHHHHHHHhcCccc
Q 013278 362 PLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHLKTVELIDFS---------GNENELELVRFLLKNGHVL 432 (446)
Q Consensus 362 l~l~~lL~~~P~Le~L~l~~~~~~~~~~w~~~~~~~~~~~c~~~~L~~v~f~---------g~~~e~~~~~~ll~~a~~L 432 (446)
.++..+.+.||+|+.|.+....- ... ....... ..++|+.+... +... .+-+..++++.+.|
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~l------~~~-~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~-~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSDI------TNE-SLESIGT-YLKNLCDFRLVLLDREERITDLPL-DNGVRSLLIGCKKL 438 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCC------CHH-HHHHHHH-HCCSCCEEEEEECSCCSCCSSCCC-HHHHHHHHHHCTTC
T ss_pred HHHHHHHhhCccCeEEEeecCCc------cHH-HHHHHHh-hCCCCcEEEEeecCCCccccCchH-HHHHHHHHHhCCCC
Confidence 23477788899999999944331 000 0001111 12456666332 1111 12345567889999
Q ss_pred cceEEEc
Q 013278 433 QKLRVSW 439 (446)
Q Consensus 433 ~~~~i~~ 439 (446)
+.+.+..
T Consensus 439 ~~L~L~~ 445 (592)
T 3ogk_B 439 RRFAFYL 445 (592)
T ss_dssp CEEEEEC
T ss_pred CEEEEec
Confidence 9999864
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=9.8e-20 Score=191.38 Aligned_cols=262 Identities=17% Similarity=0.193 Sum_probs=132.4
Q ss_pred CCCCCCCCHHHHHHHhcCCC-hHHHHhhhhcchhhhhhhc-ccceEEEecCCcchHHHHHHHhccCC---------C---
Q 013278 27 GDRLSNLPEPIIHHIFSFLE-TIDVVRASAVSRKWRYLWL-SIPYLNFNVHNICSNPLERWSLQTTN---------E--- 92 (446)
Q Consensus 27 ~d~is~LPdeiL~~Ils~Lp-~~d~~rts~lSrrWr~lw~-~~p~l~~~~~~~~~~~v~~~L~~~~~---------~--- 92 (446)
.|+++.|||||+.+||+||| .+|+++++.|||||+++.. ....+.+...... .....+..... +
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~ 80 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFA 80 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGGG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--CHHHHHhhCCCceEEeccCCCchh
Confidence 58999999999999999999 9999999999999998821 1223444322100 00111111111 0
Q ss_pred Cc--------ccHHHHHHh-------hceeeeEc---ccccCCCcc-CCCCceEEEeccccccccccccC---CCc-ccC
Q 013278 93 KF--------KDFVNWVLL-------FQNGSVNE---PIKLPRSLV-TCESLVSLKLDFGNREHQGVLNL---PTC-VGF 149 (446)
Q Consensus 93 ~f--------~~i~~w~~~-------l~~L~l~~---~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~l~~---p~~-~~~ 149 (446)
.| ..+..|+.. +++|++.. ....+..+. .|++|++|+|.+|. .+.. +.. ..+
T Consensus 81 ~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-----~~~~~~l~~~~~~~ 155 (594)
T 2p1m_B 81 DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE-----GFSTDGLAAIAATC 155 (594)
T ss_dssp GGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE-----EEEHHHHHHHHHHC
T ss_pred hcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC-----CCCHHHHHHHHHhC
Confidence 01 133445543 66777764 111111122 36777777777762 1111 112 257
Q ss_pred CCccEEEeeceEecCc----------cccccccccchhhcccCcccCccch-hh-hhhHHHhhhccccccccCccccccc
Q 013278 150 SRLKSLDLQHVESLDI----------STTSLKYLTVDEFLLSEPKGLRSCK-VI-CESLEALKLHFGREIDSSPLLENLK 217 (446)
Q Consensus 150 ~~L~~L~L~~~~~~~~----------~~~~L~~L~l~~~~~~~~~~~~~~~-~~-~~~l~~~~~~~~~ll~~cp~Le~L~ 217 (446)
++|++|+|++|.+.+. .+++|++|+++.. . .+ ...+.. ++..||+|+.|+
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~-----------~~~~~~~~l~~-------l~~~~~~L~~L~ 217 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL-----------ASEVSFSALER-------LVTRCPNLKSLK 217 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC-----------CSCCCHHHHHH-------HHHHCTTCCEEE
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc-----------CCcCCHHHHHH-------HHHhCCCCcEEe
Confidence 7777777777775541 4567777777551 1 00 133444 667788888888
Q ss_pred cccccc-CCcceEEEeccccceEEEeeeec--------------------------CC-CCCCCceEEEecCceeeEEEe
Q 013278 218 MDSCCF-PDLKILDISSNSLKSLTLERIEF--------------------------GG-DELDNYKLKIACSNLESFNIF 269 (446)
Q Consensus 218 L~~c~~-~~~~~l~i~~~~Lr~L~l~~~~~--------------------------~~-~~~~~~~~~i~ap~L~~L~~~ 269 (446)
|.+|.. .+........++|+.|.+..+.. .. .......+....++|++|+++
T Consensus 218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp CCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECT
T ss_pred cCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEcc
Confidence 888731 11000111125566665443321 00 000011111145777777777
Q ss_pred cCCCCce----eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEE
Q 013278 270 APLLPDF----TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKL 322 (446)
Q Consensus 270 ~~~~~~~----~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l 322 (446)
++..... .+..+++|+.+.+.... . ...+..+...+++|+.|.+
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~~-----~----~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDYI-----E----DAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGGG-----H----HHHHHHHHHHCTTCCEEEE
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCcc-----C----HHHHHHHHHhCCCCCEEEE
Confidence 7653321 13466777777775321 0 1122444455677777776
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=2.1e-20 Score=182.63 Aligned_cols=274 Identities=17% Similarity=0.159 Sum_probs=139.5
Q ss_pred CCCCCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhhhcc---cceEEEecCCcchHHHHHHHhccCCCCcccHHHHHHh
Q 013278 27 GDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLS---IPYLNFNVHNICSNPLERWSLQTTNEKFKDFVNWVLL 103 (446)
Q Consensus 27 ~d~is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~lw~~---~p~l~~~~~~~~~~~v~~~L~~~~~~~f~~i~~w~~~ 103 (446)
...+++|||||+.+||++|+.+|+++++.|||||+++... ...+++....-....+...+. ..
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~-~~------------- 71 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLS-QG------------- 71 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHH-TT-------------
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhh-cc-------------
Confidence 4568999999999999999999999999999999998432 223444433211112222210 00
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC---C-CcccCCCccEEEeeceEecCccccccccccchh
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL---P-TCVGFSRLKSLDLQHVESLDISTTSLKYLTVDE 177 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~---p-~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~ 177 (446)
++.+++.. ....+..++.+++|++|+|+++ .+.. + ....+++|++|+|+++.+.+
T Consensus 72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~------~l~~~~~~~~~~~~~~L~~L~L~~~~l~~------------- 132 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS------VIEVSTLHGILSQCSKLQNLSLEGLRLSD------------- 132 (336)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTC------EECHHHHHHHHTTBCCCSEEECTTCBCCH-------------
T ss_pred ceEEEcCCccccccchhhccCCCCCEEEccCC------CcCHHHHHHHHhhCCCCCEEeCcCcccCH-------------
Confidence 23333332 1112222334455555555555 3221 1 12244555555555554332
Q ss_pred hcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccc-cCC--cceEEEeccccceEEEeee-ecCCCCCCC
Q 013278 178 FLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCC-FPD--LKILDISSNSLKSLTLERI-EFGGDELDN 253 (446)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~-~~~--~~~l~i~~~~Lr~L~l~~~-~~~~~~~~~ 253 (446)
... . .+..|++|++|+|.+|. ..+ .....-..++|+.|.+.+| ...+ .+.
T Consensus 133 ----------------~~~-~-------~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~ 186 (336)
T 2ast_B 133 ----------------PIV-N-------TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE--KHV 186 (336)
T ss_dssp ----------------HHH-H-------HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH--HHH
T ss_pred ----------------HHH-H-------HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh--HHH
Confidence 222 2 34567888888888873 332 1111112367888888777 4321 012
Q ss_pred ceEEEecC-ceeeEEEecCC--CCc----eeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechh
Q 013278 254 YKLKIACS-NLESFNIFAPL--LPD----FTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTL 326 (446)
Q Consensus 254 ~~~~i~ap-~L~~L~~~~~~--~~~----~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 326 (446)
.......| +|++|+++++. ... ..+..+++|+.+++..+.. . .......+..+++|+.|.++.+.
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~---l-----~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM---L-----KNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT---C-----CGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc---C-----CHHHHHHHhCCCCCCEeeCCCCC
Confidence 22233456 77777777763 211 1234566777776643310 0 00112344566777777776653
Q ss_pred HHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCc
Q 013278 327 YQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLE 375 (446)
Q Consensus 327 ~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le 375 (446)
. . .......+..+++|+.|++..+ .....+ ..+.+.+|.|+
T Consensus 259 ~-~----~~~~~~~l~~~~~L~~L~l~~~-i~~~~~--~~l~~~l~~L~ 299 (336)
T 2ast_B 259 D-I----IPETLLELGEIPTLKTLQVFGI-VPDGTL--QLLKEALPHLQ 299 (336)
T ss_dssp T-C----CGGGGGGGGGCTTCCEEECTTS-SCTTCH--HHHHHHSTTSE
T ss_pred C-C----CHHHHHHHhcCCCCCEEeccCc-cCHHHH--HHHHhhCcceE
Confidence 1 0 0001112445667777777654 111111 34444555555
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.15 E-value=3.6e-11 Score=117.38 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=44.4
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC----ccccccccccch
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD----ISTTSLKYLTVD 176 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~ 176 (446)
+++|++.. ...+|. +..+++|++|+|+++ .+.. +....+++|++|+|+++.+.+ ..+++|++|+++
T Consensus 68 L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n------~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 68 LEYLNLNGNQITDISP-LSNLVKLTNLYIGTN------KITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLG 140 (347)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCCEEECCSS------CCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECT
T ss_pred ccEEEccCCccccchh-hhcCCcCCEEEccCC------cccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEECC
Confidence 67777765 233333 556788888888887 4444 345577788888888777655 256777777776
Q ss_pred h
Q 013278 177 E 177 (446)
Q Consensus 177 ~ 177 (446)
+
T Consensus 141 ~ 141 (347)
T 4fmz_A 141 A 141 (347)
T ss_dssp T
T ss_pred C
Confidence 5
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.10 E-value=4.2e-11 Score=116.51 Aligned_cols=138 Identities=20% Similarity=0.159 Sum_probs=78.6
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CC-cccCCCccEEEeeceEecCccccccccccchhhc
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PT-CVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFL 179 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~-~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~ 179 (446)
++.|++.. ...+|..+..+++|++|+|+++ .+.. |. ...+++|++|+|+++.+..
T Consensus 83 l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n------~l~~lp~~~~~l~~L~~L~Ls~n~l~~--------------- 141 (328)
T 4fcg_A 83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAA------GLMELPDTMQQFAGLETLTLARNPLRA--------------- 141 (328)
T ss_dssp CCEEEEESSCCSSCCSCGGGGTTCSEEEEESS------CCCCCCSCGGGGTTCSEEEEESCCCCC---------------
T ss_pred eeEEEccCCCchhcChhhhhCCCCCEEECCCC------CccchhHHHhccCCCCEEECCCCcccc---------------
Confidence 56777765 4467777777888888888887 4443 43 4567888888888776653
Q ss_pred ccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEE----------eccccceEEEeeeecCCC
Q 013278 180 LSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDI----------SSNSLKSLTLERIEFGGD 249 (446)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i----------~~~~Lr~L~l~~~~~~~~ 249 (446)
+.. -+..+++|+.|+|.+|...+.....+ ..++|+.|.+.+|....
T Consensus 142 ----------------lp~-------~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~- 197 (328)
T 4fcg_A 142 ----------------LPA-------SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS- 197 (328)
T ss_dssp ----------------CCG-------GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-
T ss_pred ----------------CcH-------HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-
Confidence 111 45567777888887775332211111 13566667766665432
Q ss_pred CCCCceEEEecCceeeEEEecCCCCce--eecCCCCceEEEE
Q 013278 250 ELDNYKLKIACSNLESFNIFAPLLPDF--TLESLNSLQNAFI 289 (446)
Q Consensus 250 ~~~~~~~~i~ap~L~~L~~~~~~~~~~--~l~~~p~L~~l~l 289 (446)
........++|++|.++++....+ .+..+++|+.+++
T Consensus 198 ---lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 198 ---LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp ---CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred ---chHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 111122345666666666544321 2334444554444
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.09 E-value=6.7e-11 Score=115.47 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=90.3
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC----ccccccccccch
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD----ISTTSLKYLTVD 176 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~ 176 (446)
+++|++.. ...+|. +..+++|++|+|+++ .+.. +....+++|++|+|+++.+.+ ..+++|++|+++
T Consensus 46 L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n------~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN------QITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN 118 (347)
T ss_dssp CSEEECCSSCCCCCTT-GGGCTTCCEEECCSS------CCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECT
T ss_pred ccEEEEeCCccccchh-hhhcCCccEEEccCC------ccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECc
Confidence 67777765 334443 567899999999999 5554 346688999999999998766 368889999998
Q ss_pred hhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceE
Q 013278 177 EFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKL 256 (446)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~ 256 (446)
+ ..+..+ + .+..+++|+.|++.+|............++|+.|.+.+|.... ...
T Consensus 119 ~----------------n~i~~~----~-~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~- 172 (347)
T 4fmz_A 119 E----------------DNISDI----S-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD----VTP- 172 (347)
T ss_dssp T----------------SCCCCC----G-GGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC----CGG-
T ss_pred C----------------CcccCc----h-hhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC----chh-
Confidence 7 332221 1 1456666777777666421111110112566666666665432 111
Q ss_pred EEecCceeeEEEecCCCCcee-ecCCCCceEEEEE
Q 013278 257 KIACSNLESFNIFAPLLPDFT-LESLNSLQNAFIF 290 (446)
Q Consensus 257 ~i~ap~L~~L~~~~~~~~~~~-l~~~p~L~~l~l~ 290 (446)
....++|++|+++++....+. +..+++|+.+.+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred hccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence 223456666666655443221 3445555555543
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=119.15 Aligned_cols=234 Identities=18% Similarity=0.117 Sum_probs=105.8
Q ss_pred hceeeeEc---ccccCCCccCCCCceEEEeccccccccccccC-C--CcccCCCccEEEeeceEecC------ccccccc
Q 013278 104 FQNGSVNE---PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-P--TCVGFSRLKSLDLQHVESLD------ISTTSLK 171 (446)
Q Consensus 104 l~~L~l~~---~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p--~~~~~~~L~~L~L~~~~~~~------~~~~~L~ 171 (446)
+++|++.. ....|..+..+++|++|+|+++ .+.. | ....+++|++|+|+++.+.. ..+++|+
T Consensus 58 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSN------RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSS------CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCEEECCCCccCEeChhhhhCCccCCEEECCCC------cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 45555543 2222444555666666666665 3333 2 12355666666666655433 1455566
Q ss_pred cccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCC
Q 013278 172 YLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDE 250 (446)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~ 250 (446)
+|++++ ..+.. ..+..+..+++|+.|+|.+|...+...-.+. .++|+.|.+.+|....
T Consensus 132 ~L~l~~----------------n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-- 190 (477)
T 2id5_A 132 SLEVGD----------------NDLVY---ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-- 190 (477)
T ss_dssp EEEECC----------------TTCCE---ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE--
T ss_pred EEECCC----------------Cccce---eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE--
Confidence 666654 22211 0111345566666666666654332111111 2556666666554321
Q ss_pred CCCceEEEecCceeeEEEecCCCCcee---ecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhH
Q 013278 251 LDNYKLKIACSNLESFNIFAPLLPDFT---LESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLY 327 (446)
Q Consensus 251 ~~~~~~~i~ap~L~~L~~~~~~~~~~~---l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 327 (446)
.........++|++|++.++...... .....+|+.+++....-... ....+..+++|+.|.++.+.+
T Consensus 191 -~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 191 -IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV---------PYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp -ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC---------CHHHHTTCTTCCEEECCSSCC
T ss_pred -eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc---------CHHHhcCccccCeeECCCCcC
Confidence 00001123455666666554321111 11223555555543311111 023445666677776666543
Q ss_pred HHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 328 QFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 328 ~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
.. ..+..+..+++|+.|.+..+.... .. ...+..+++|+.|+|....
T Consensus 261 ~~------~~~~~~~~l~~L~~L~L~~n~l~~-~~--~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 261 ST------IEGSMLHELLRLQEIQLVGGQLAV-VE--PYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CE------ECTTSCTTCTTCCEEECCSSCCSE-EC--TTTBTTCTTCCEEECCSSC
T ss_pred Cc------cChhhccccccCCEEECCCCccce-EC--HHHhcCcccCCEEECCCCc
Confidence 21 122224455666666665432211 11 2234566666666665443
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.06 E-value=1.2e-10 Score=118.82 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=27.6
Q ss_pred ccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC----ccccccccccch
Q 013278 119 LVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD----ISTTSLKYLTVD 176 (446)
Q Consensus 119 l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~ 176 (446)
+..+++|++|+|+++ .+.. +....+++|++|+++++.+.+ ..+++|+.|.++
T Consensus 108 ~~~l~~L~~L~L~~n------~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 108 LANLTNLTGLTLFNN------QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 164 (466)
T ss_dssp GTTCTTCCEEECCSS------CCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE
T ss_pred hcCCCCCCEEECCCC------CCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecC
Confidence 444566666666655 3333 224456666666666666544 134555555543
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.05 E-value=2e-11 Score=124.63 Aligned_cols=234 Identities=15% Similarity=0.125 Sum_probs=142.5
Q ss_pred hceeeeEc--ccccCCC-ccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccc
Q 013278 104 FQNGSVNE--PIKLPRS-LVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLK 171 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~-l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~ 171 (446)
++.|++.. ...+|.. +..+++|++|+|+++ .+.. + ....+++|++|+|.++.+.. .++++|+
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n------~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN------KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS------CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCC------ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 67888865 4456654 456899999999988 4443 2 34578899999998876543 2578899
Q ss_pred cccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCC
Q 013278 172 YLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDE 250 (446)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~ 250 (446)
.|++++ ..+.. ..+..+..+++|+.|+|.+|...+.....+. .++|+.|++.+|....
T Consensus 156 ~L~l~~----------------n~l~~---~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~-- 214 (477)
T 2id5_A 156 QLTLEK----------------CNLTS---IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-- 214 (477)
T ss_dssp EEEEES----------------CCCSS---CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC--
T ss_pred EEECCC----------------CcCcc---cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc--
Confidence 998877 32221 0111467788999999988875432222222 3688888888876432
Q ss_pred CCCceEEEecCceeeEEEecCCCCcee---ecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhH
Q 013278 251 LDNYKLKIACSNLESFNIFAPLLPDFT---LESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLY 327 (446)
Q Consensus 251 ~~~~~~~i~ap~L~~L~~~~~~~~~~~---l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 327 (446)
.........++|++|.++++....+. +..+++|+.+++........ ....+..+++|+.|.++.+.+
T Consensus 215 -~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 215 -TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI---------EGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp -EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE---------CTTSCTTCTTCCEEECCSSCC
T ss_pred -ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc---------ChhhccccccCCEEECCCCcc
Confidence 00000112347888888887654433 56777888877754321111 023456677788888776644
Q ss_pred HHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 328 QFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 328 ~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
.. ..+..+..+++|+.|++..+.... +. ...+..+++|+.|++...+
T Consensus 285 ~~------~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 285 AV------VEPYAFRGLNYLRVLNVSGNQLTT-LE--ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SE------ECTTTBTTCTTCCEEECCSSCCSC-CC--GGGBSCGGGCCEEECCSSC
T ss_pred ce------ECHHHhcCcccCCEEECCCCcCce-eC--HhHcCCCcccCEEEccCCC
Confidence 21 222335566777777776553221 11 2345667778887776554
No 10
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.04 E-value=1e-09 Score=107.55 Aligned_cols=262 Identities=16% Similarity=0.112 Sum_probs=156.7
Q ss_pred ccCCCccCCCCceEEEeccccccccccccC-C--CcccCCCccEEEeeceEecC------ccccccccccchhhcccCcc
Q 013278 114 KLPRSLVTCESLVSLKLDFGNREHQGVLNL-P--TCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEPK 184 (446)
Q Consensus 114 ~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p--~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~~ 184 (446)
.+|..+. ++|++|+|+++ .+.. + ....+++|++|+|+++.+.+ .++++|++|++++
T Consensus 45 ~iP~~~~--~~L~~L~l~~n------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~------- 109 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNN------RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY------- 109 (353)
T ss_dssp SCCTTCC--TTCCEEECTTS------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-------
T ss_pred ccccccc--ccCcEEECCCC------cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-------
Confidence 4454433 47888888877 4443 2 34567788888887776544 2467777777766
Q ss_pred cCccchhhhhhHHHhhhccccccccCcccccccccccccCCcce-EEEe-ccccceEEEeeeecCCCCCCCceEEEecCc
Q 013278 185 GLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKI-LDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSN 262 (446)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~-l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~ 262 (446)
..+..+ .+..+..+++|++|++.+|....... -.+. .++|++|.+.+|.... .-........++
T Consensus 110 ---------n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~~ 175 (353)
T 2z80_A 110 ---------NYLSNL---SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT--KIQRKDFAGLTF 175 (353)
T ss_dssp ---------SCCSSC---CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC--EECTTTTTTCCE
T ss_pred ---------CcCCcC---CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc--ccCHHHccCCCC
Confidence 322221 01146788999999999997654433 1222 4899999999984221 000011123578
Q ss_pred eeeEEEecCCCCce---eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhccc
Q 013278 263 LESFNIFAPLLPDF---TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSY 339 (446)
Q Consensus 263 L~~L~~~~~~~~~~---~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~ 339 (446)
|++|.++++..... .+..+++|+.+++........ ...++..+++++.|.++.+.+... ...
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~~L~~L~L~~n~l~~~------~~~ 240 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL---------LEIFVDVTSSVECLELRDTDLDTF------HFS 240 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH---------HHHHHHHTTTEEEEEEESCBCTTC------CCC
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc---------hhhhhhhcccccEEECCCCccccc------ccc
Confidence 99999999876543 355778888888865422111 134456689999999998765321 111
Q ss_pred C---CCccCccceEEEEeecCcc-cHHhHHHHhhcCCCCcEEEEEecCCCCCCCCCCCCCccccccccccceeEEe----
Q 013278 340 F---SASFNNLKSLILCVTTAEW-TVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHLKTVELID---- 411 (446)
Q Consensus 340 ~---~p~f~~L~~L~l~~~~~~~-~~l~l~~lL~~~P~Le~L~l~~~~~~~~~~w~~~~~~~~~~~c~~~~L~~v~---- 411 (446)
. ......++.+.+....... ....++..+..+++|+.|++....= . ..+ .... ..+++|+.+.
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l---~--~i~---~~~~-~~l~~L~~L~L~~N 311 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL---K--SVP---DGIF-DRLTSLQKIWLHTN 311 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC---C--CCC---TTTT-TTCTTCCEEECCSS
T ss_pred ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC---C--ccC---HHHH-hcCCCCCEEEeeCC
Confidence 1 1245678888887654332 3334577789999999999976651 1 111 1111 1236888883
Q ss_pred -cCCCHhHHHHHHHHHhc
Q 013278 412 -FSGNENELELVRFLLKN 428 (446)
Q Consensus 412 -f~g~~~e~~~~~~ll~~ 428 (446)
+.|.-..+.+....+++
T Consensus 312 ~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 312 PWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp CBCCCHHHHHHHHHHHHH
T ss_pred CccCcCCCcHHHHHHHHh
Confidence 44444445555444444
No 11
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.03 E-value=3.3e-11 Score=126.24 Aligned_cols=240 Identities=17% Similarity=0.191 Sum_probs=129.7
Q ss_pred hceeeeEcc-----cccCCCccCCCCceEEEeccccccccccccC------CC-cccCCCccEEEeeceE--ecC-----
Q 013278 104 FQNGSVNEP-----IKLPRSLVTCESLVSLKLDFGNREHQGVLNL------PT-CVGFSRLKSLDLQHVE--SLD----- 164 (446)
Q Consensus 104 l~~L~l~~~-----~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~------p~-~~~~~~L~~L~L~~~~--~~~----- 164 (446)
+++|++... ..++.....|++|++|+|++| .+.. +. ...+++|++|+|+++. +..
T Consensus 132 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~------~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES------DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC------EEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred CcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC------ccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 899999752 124444446899999999999 4332 11 2267899999999986 222
Q ss_pred --ccccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCccccccccccccc-----------------CC
Q 013278 165 --ISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCF-----------------PD 225 (446)
Q Consensus 165 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~-----------------~~ 225 (446)
.++++|++|++.+ |..+ ..+.. ++..|++|++|.+..|.. ..
T Consensus 206 l~~~~~~L~~L~L~~-----------~~~~-~~l~~-------~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~ 266 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNR-----------AVPL-EKLAT-------LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266 (594)
T ss_dssp HHHHCTTCCEEECCT-----------TSCH-HHHHH-------HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTT
T ss_pred HHHhCCCCcEEecCC-----------CCcH-HHHHH-------HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCC
Confidence 2579999999976 1111 22333 666777777776544310 01
Q ss_pred cceE-----------E---EeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCc---eeecCCCCceEEE
Q 013278 226 LKIL-----------D---ISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPD---FTLESLNSLQNAF 288 (446)
Q Consensus 226 ~~~l-----------~---i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---~~l~~~p~L~~l~ 288 (446)
+..+ . -..++|++|++.+|...+ .....+.-.+|+|++|.+.++.... .....+++|+.+.
T Consensus 267 L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~--~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS--YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp CCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH--HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH--HHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEE
Confidence 1111 0 024788888888877321 1112222246788888888762110 1122467788777
Q ss_pred EEEEe-----ccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCC-ccCccceEEEEeec----Cc
Q 013278 289 IFLET-----IGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSA-SFNNLKSLILCVTT----AE 358 (446)
Q Consensus 289 l~~~~-----~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p-~f~~L~~L~l~~~~----~~ 358 (446)
+..+. ...... ...+..+...+++++.|.+....+.... ...+. .+++|++|++.... ..
T Consensus 345 L~~~~~~g~~~~~~l~----~~~l~~l~~~~~~L~~L~~~~~~l~~~~------~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALT----EQGLVSVSMGCPKLESVLYFCRQMTNAA------LITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp EECSCTTCSSCSSCCC----HHHHHHHHHHCTTCCEEEEEESCCCHHH------HHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred EecCcccccccCCCCC----HHHHHHHHHhchhHHHHHHhcCCcCHHH------HHHHHhhCCCcceeEeecccCCCccc
Confidence 74310 000001 1122444455777777766554332110 00111 35677777777321 11
Q ss_pred cc----HHhHHHHhhcCCCCcEEEEE
Q 013278 359 WT----VPLIIRLLNHSPNLEVLTIY 380 (446)
Q Consensus 359 ~~----~l~l~~lL~~~P~Le~L~l~ 380 (446)
.. .-++..+++.||+|+.|++.
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred ccCCchhhHHHHHHhhCCCccEEeec
Confidence 11 12335566677777777773
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.01 E-value=3.3e-10 Score=114.72 Aligned_cols=17 Identities=6% Similarity=-0.123 Sum_probs=9.8
Q ss_pred cccCccccccccccccc
Q 013278 207 IDSSPLLENLKMDSCCF 223 (446)
Q Consensus 207 l~~cp~Le~L~L~~c~~ 223 (446)
+..+++|++|++.+|..
T Consensus 150 ~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp GGGCTTCCEEECTTCCB
T ss_pred cCCCCcccEEeCCCCcc
Confidence 45556666666666553
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.00 E-value=5.4e-11 Score=120.54 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=64.1
Q ss_pred CceeeEEEecCCCCce---eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhc
Q 013278 261 SNLESFNIFAPLLPDF---TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQR 337 (446)
Q Consensus 261 p~L~~L~~~~~~~~~~---~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~ 337 (446)
++|++|+++++..... .+..+++|+.+++........ ....+..+++|+.|.++.+.+. ...
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~Ls~N~l~------~~~ 339 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI---------DDNAFWGLTHLLKLNLSQNFLG------SID 339 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE---------CTTTTTTCTTCCEEECCSSCCC------EEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCccccc---------ChhHhcCcccCCEEECCCCccC------CcC
Confidence 5788888887765432 245678888887743311111 1334567888888888876542 122
Q ss_pred ccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 338 SYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 338 ~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
+..+..+++|++|++..+.... .. +..+..+|+|+.|++....
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~-~~--~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRA-LG--DQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCE-EC--TTTTTTCTTCCEEECCSSC
T ss_pred hhHhcCcccCCEEECCCCcccc-cC--hhhccccccccEEECCCCc
Confidence 2335567788888887654321 11 3445678888888887654
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.98 E-value=3.8e-11 Score=126.30 Aligned_cols=53 Identities=28% Similarity=0.272 Sum_probs=30.6
Q ss_pred ccCCCCceEEEeccccccccccccC-C-CcccCCCccEEEeeceEecC------ccccccccccchh
Q 013278 119 LVTCESLVSLKLDFGNREHQGVLNL-P-TCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDE 177 (446)
Q Consensus 119 l~~~~~L~~L~L~~~~~~~~~~l~~-p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~ 177 (446)
+..+++|++|+|+++ .+.. | ....+++|++|+++++.+.+ ..+++|++|++++
T Consensus 274 ~~~l~~L~~L~l~~n------~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 274 FHCFSGLQELDLTAT------HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp TTTCTTCSEEECTTS------CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred hccccCCCEEeccCC------ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 444666777777666 3333 3 23456666677666665543 2456666666655
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.96 E-value=5.1e-10 Score=111.19 Aligned_cols=259 Identities=17% Similarity=0.152 Sum_probs=136.3
Q ss_pred hceeeeEc--ccccC-CCccCCCCceEEEeccccccccccccC--CC-cccCCCccEEEeeceEecC------ccccccc
Q 013278 104 FQNGSVNE--PIKLP-RSLVTCESLVSLKLDFGNREHQGVLNL--PT-CVGFSRLKSLDLQHVESLD------ISTTSLK 171 (446)
Q Consensus 104 l~~L~l~~--~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~l~~--p~-~~~~~~L~~L~L~~~~~~~------~~~~~L~ 171 (446)
++.|++.. ...+| ..+..+++|++|+|+++ .+.. |. ...+++|++|+|+++.+.. ..+++|+
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCC------CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 56666654 22333 34555677777777777 4443 22 3467777777777776554 2466777
Q ss_pred cccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccc---------------
Q 013278 172 YLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNS--------------- 235 (446)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~--------------- 235 (446)
+|++++ ..+.. ..+..+..+++|+.|++.+|...+. .+. .++
T Consensus 145 ~L~L~~----------------n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 145 TLSMSN----------------NNLER---IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp EEECCS----------------SCCCB---CCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEEE
T ss_pred EEECCC----------------CccCc---cChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccccC
Confidence 777766 22211 1111355666777777766654321 111 134
Q ss_pred ----cceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCce-eecCCCCceEEEEEEEeccchhhhhHHhHHHHHH
Q 013278 236 ----LKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDF-TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKI 310 (446)
Q Consensus 236 ----Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~-~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 310 (446)
|+.|++.+|..... -....++|++|.++++..... .+..+++|+.+++........ ....
T Consensus 203 ~~~~L~~L~l~~n~l~~~------~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~---------~~~~ 267 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVV------RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI---------MYHP 267 (390)
T ss_dssp CCSSCSEEECCSSCCCEE------ECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE---------ESGG
T ss_pred CCCcceEEECCCCeeeec------cccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc---------ChhH
Confidence 44555544443210 001125667777666654322 345667777777654321111 1344
Q ss_pred cccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecCCCCCCCC
Q 013278 311 LNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYDDW 390 (446)
Q Consensus 311 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~~~~~~~w 390 (446)
+..+++++.|.++.+.+.. .+.....+++|+.|++..+.... + ..-+..+|+|+.|++.... ..
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-------~~~~~~~l~~L~~L~L~~n~l~~-~---~~~~~~l~~L~~L~L~~N~---i~-- 331 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSHNHLLH-V---ERNQPQFDRLENLYLDHNS---IV-- 331 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-------EECSSSCCTTCCEEECCSSCCCC-C---GGGHHHHTTCSEEECCSSC---CC--
T ss_pred ccccccCCEEECCCCcCcc-------cCcccCCCCCCCEEECCCCccee-c---CccccccCcCCEEECCCCc---cc--
Confidence 5667788888887765421 11123356788888887654321 1 2223456888888886554 11
Q ss_pred CCCCCccccccccccceeEEecCCCHhHHHHHHHHHhc
Q 013278 391 EIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKN 428 (446)
Q Consensus 391 ~~~~~~~~~~~c~~~~L~~v~f~g~~~e~~~~~~ll~~ 428 (446)
. .+-..+++|+.+...|..-.-.-...++++
T Consensus 332 -~------~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~ 362 (390)
T 3o6n_A 332 -T------LKLSTHHTLKNLTLSHNDWDCNSLRALFRN 362 (390)
T ss_dssp -C------CCCCTTCCCSEEECCSSCEEHHHHHHHTTT
T ss_pred -e------eCchhhccCCEEEcCCCCccchhHHHHHHH
Confidence 1 111234688888777654433334444443
No 16
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.95 E-value=1.2e-11 Score=119.77 Aligned_cols=229 Identities=14% Similarity=0.112 Sum_probs=150.2
Q ss_pred hceeeeEc--ccccC-CCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC-ccccccccccchhh
Q 013278 104 FQNGSVNE--PIKLP-RSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD-ISTTSLKYLTVDEF 178 (446)
Q Consensus 104 l~~L~l~~--~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~-~~~~~L~~L~l~~~ 178 (446)
+++|++.. ...++ ..+..+++|++|+|+++ .+.. +....+++|++|+|+++.+.+ ..+++|++|++++
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n------~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~- 108 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSN------VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAAN- 108 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS------CCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCS-
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCC------cCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCC-
Confidence 67777765 22232 34556788999999988 5543 335578899999999888766 3467888888877
Q ss_pred cccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEE
Q 013278 179 LLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLK 257 (446)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~ 257 (446)
..+..+ ....++.|+.|++.+|...+.....+. .++|+.|++.+|...+ .....+.
T Consensus 109 ---------------n~l~~~------~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~ 165 (317)
T 3o53_A 109 ---------------NNISRV------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VNFAELA 165 (317)
T ss_dssp ---------------SCCSEE------EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--EEGGGGG
T ss_pred ---------------CccCCc------CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--ccHHHHh
Confidence 444331 234578899999998887665444443 3788999988887532 0001111
Q ss_pred EecCceeeEEEecCCCCcee-ecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhh
Q 013278 258 IACSNLESFNIFAPLLPDFT-LESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQ 336 (446)
Q Consensus 258 i~ap~L~~L~~~~~~~~~~~-l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~ 336 (446)
-..++|++|.++++....+. ...+++|+.+++....-... ...+..+++++.|.++.+.+..
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l----------~~~~~~l~~L~~L~L~~N~l~~------- 228 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM----------GPEFQSAAGVTWISLRNNKLVL------- 228 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE----------CGGGGGGTTCSEEECTTSCCCE-------
T ss_pred hccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcc----------hhhhcccCcccEEECcCCcccc-------
Confidence 13578999999888765432 23478888888764421111 1225678899999998876531
Q ss_pred cccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEe
Q 013278 337 RSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYF 381 (446)
Q Consensus 337 ~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~ 381 (446)
.+..+..+++|+.|++..+....+. +..++..+|.|+.|.+..
T Consensus 229 l~~~~~~l~~L~~L~l~~N~~~~~~--~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 229 IEKALRFSQNLEHFDLRGNGFHCGT--LRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp ECTTCCCCTTCCEEECTTCCCBHHH--HHHHHHTCHHHHHHHHHH
T ss_pred hhhHhhcCCCCCEEEccCCCccCcC--HHHHHhccccceEEECCC
Confidence 1223556788999998765443233 378888999999888874
No 17
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.95 E-value=2.4e-11 Score=124.71 Aligned_cols=228 Identities=14% Similarity=0.113 Sum_probs=142.2
Q ss_pred hceeeeEc--cccc-CCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC-ccccccccccchhh
Q 013278 104 FQNGSVNE--PIKL-PRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD-ISTTSLKYLTVDEF 178 (446)
Q Consensus 104 l~~L~l~~--~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~-~~~~~L~~L~l~~~ 178 (446)
++.|++.. ...+ |..+..+++|++|+|++| .+.. +....+++|++|+|+++.+.+ +..++|++|++++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N------~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~- 108 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSN------VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAAN- 108 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS------CCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCS-
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC------CCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcC-
Confidence 56777765 2223 345566788888888888 5543 235577888888888887765 2457788888876
Q ss_pred cccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEE
Q 013278 179 LLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLK 257 (446)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~ 257 (446)
..+..+ ....++.|+.|+|.+|.+.+.....+. .++|+.|++++|.+.+ .....+.
T Consensus 109 ---------------N~l~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~ 165 (487)
T 3oja_A 109 ---------------NNISRV------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VNFAELA 165 (487)
T ss_dssp ---------------SCCCCE------EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE--EEGGGGG
T ss_pred ---------------CcCCCC------CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC--cChHHHh
Confidence 333331 223567888888888876655444443 3788888888876532 0011111
Q ss_pred EecCceeeEEEecCCCCcee-ecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhh
Q 013278 258 IACSNLESFNIFAPLLPDFT-LESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQ 336 (446)
Q Consensus 258 i~ap~L~~L~~~~~~~~~~~-l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~ 336 (446)
-..++|++|+++++....+. ...+++|+.++++...-... ..-+..+++|+.|.++.+.+..
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~~~l~~L~~L~Ls~N~l~~------- 228 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM----------GPEFQSAAGVTWISLRNNKLVL------- 228 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE----------CGGGGGGTTCSEEECTTSCCCE-------
T ss_pred hhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCC----------CHhHcCCCCccEEEecCCcCcc-------
Confidence 13578888888887764432 33577888887764421111 1225677889999988866531
Q ss_pred cccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEE
Q 013278 337 RSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIY 380 (446)
Q Consensus 337 ~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~ 380 (446)
.+..+..+++|+.|++..+....+ .++.++..+|.|+.|.+.
T Consensus 229 lp~~l~~l~~L~~L~l~~N~l~c~--~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 IEKALRFSQNLEHFDLRGNGFHCG--TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTCCCCTTCCEEECTTCCBCHH--HHHHHHTTCHHHHHHHHH
T ss_pred cchhhccCCCCCEEEcCCCCCcCc--chHHHHHhCCCCcEEecc
Confidence 122345667888888865433322 336777788888777764
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.94 E-value=8.8e-11 Score=113.99 Aligned_cols=257 Identities=11% Similarity=0.072 Sum_probs=153.7
Q ss_pred hceeeeEc--ccccCC-CccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC---cccccccccc
Q 013278 104 FQNGSVNE--PIKLPR-SLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD---ISTTSLKYLT 174 (446)
Q Consensus 104 l~~L~l~~--~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~---~~~~~L~~L~ 174 (446)
++.|++.. ...+|. .+..+++|++|+|+++ .+.. | ....+++|++|+|+++.+.. ..+++|++|+
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~ 127 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINN------KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR 127 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS------CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEE
T ss_pred CeEEECCCCcCCEeChhhhccCCCCCEEECCCC------cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEE
Confidence 45666654 233443 5566888999999988 5543 3 34578889999998887654 2357788888
Q ss_pred chhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCc--ceEEEe-ccccceEEEeeeecCCCCC
Q 013278 175 VDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDL--KILDIS-SNSLKSLTLERIEFGGDEL 251 (446)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~--~~l~i~-~~~Lr~L~l~~~~~~~~~~ 251 (446)
+++ ..+.. ..+..+..+++|+.|++.+|..... ..-.+. .++|+.|.+.+|.......
T Consensus 128 l~~----------------n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 128 VHE----------------NEITK---VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp CCS----------------SCCCB---BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred CCC----------------Ccccc---cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence 876 22221 1111467889999999998875321 111122 3789999999887643111
Q ss_pred CCceEEEecCceeeEEEecCCCCce---eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHH
Q 013278 252 DNYKLKIACSNLESFNIFAPLLPDF---TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQ 328 (446)
Q Consensus 252 ~~~~~~i~ap~L~~L~~~~~~~~~~---~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 328 (446)
.. .++|++|.++++..... .+..+++|+.+++........ ....+..+++++.|.++.+.+.
T Consensus 189 ~~------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 189 GL------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV---------DNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp SC------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE---------CTTTGGGSTTCCEEECCSSCCS
T ss_pred cc------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee---------ChhhccCCCCCCEEECCCCcCc
Confidence 11 27899999998876543 356788899888864421111 0234677899999999987653
Q ss_pred HHHHHhhhcccCCCccCccceEEEEeecCcc---cHHhHHHHhhcCCCCcEEEEEecCCCCCCCCCCCCCcccccccccc
Q 013278 329 FLNAILEQRSYFSASFNNLKSLILCVTTAEW---TVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHLK 405 (446)
Q Consensus 329 ~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~---~~l~l~~lL~~~P~Le~L~l~~~~~~~~~~w~~~~~~~~~~~c~~~ 405 (446)
. .+..+..+++|+.|++..+.... ..+.-.......+.|+.|.+...+ ...|..+ .....|. .
T Consensus 254 ~-------lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~---~~~~~i~---~~~f~~~-~ 319 (330)
T 1xku_A 254 K-------VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP---VQYWEIQ---PSTFRCV-Y 319 (330)
T ss_dssp S-------CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS---SCGGGSC---GGGGTTC-C
T ss_pred c-------CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc---ccccccC---ccccccc-c
Confidence 1 12235567889999988654321 111000111235788888887655 1223333 2234443 4
Q ss_pred ceeEEecCC
Q 013278 406 TVELIDFSG 414 (446)
Q Consensus 406 ~L~~v~f~g 414 (446)
+|+.+...+
T Consensus 320 ~l~~l~L~~ 328 (330)
T 1xku_A 320 VRAAVQLGN 328 (330)
T ss_dssp CGGGEEC--
T ss_pred ceeEEEecc
Confidence 666655443
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.94 E-value=2.7e-10 Score=110.50 Aligned_cols=221 Identities=15% Similarity=0.095 Sum_probs=139.2
Q ss_pred cccCCCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccccccchhhcccCc
Q 013278 113 IKLPRSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEP 183 (446)
Q Consensus 113 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~ 183 (446)
..+|..+. ++|++|+|+++ .+.. + ....+++|++|+|+++.+.+ ..+++|++|++++
T Consensus 44 ~~lp~~~~--~~l~~L~L~~n------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~------ 109 (330)
T 1xku_A 44 EKVPKDLP--PDTALLDLQNN------KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK------ 109 (330)
T ss_dssp CSCCCSCC--TTCCEEECCSS------CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS------
T ss_pred cccCccCC--CCCeEEECCCC------cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC------
Confidence 34554432 57899999988 5554 2 34578899999999887765 2578888888887
Q ss_pred ccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCc
Q 013278 184 KGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSN 262 (446)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~ 262 (446)
..+..+ +. ...+.|++|++.+|...+...-.+. .++|+.|++.+|...... .........++
T Consensus 110 ----------n~l~~l----~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~l~~ 172 (330)
T 1xku_A 110 ----------NQLKEL----PE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-IENGAFQGMKK 172 (330)
T ss_dssp ----------SCCSBC----CS--SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG-BCTTGGGGCTT
T ss_pred ----------CcCCcc----Ch--hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC-cChhhccCCCC
Confidence 444331 11 1237899999998875543221122 378999999888753200 01111224688
Q ss_pred eeeEEEecCCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCC
Q 013278 263 LESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSA 342 (446)
Q Consensus 263 L~~L~~~~~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p 342 (446)
|++|.++++....+.....++|+.+++........ ....+..+++++.|.++.+.+.. ..+..+.
T Consensus 173 L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~ 237 (330)
T 1xku_A 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV---------DAASLKGLNNLAKLGLSFNSISA------VDNGSLA 237 (330)
T ss_dssp CCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE---------CTGGGTTCTTCCEEECCSSCCCE------ECTTTGG
T ss_pred cCEEECCCCccccCCccccccCCEEECCCCcCCcc---------CHHHhcCCCCCCEEECCCCcCce------eChhhcc
Confidence 99999988876544433447888887753311111 13456788899999998765421 1222355
Q ss_pred ccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 343 SFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 343 ~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
.+++|++|++..+... .++..+..+++|+.|++....
T Consensus 238 ~l~~L~~L~L~~N~l~----~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV----KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp GSTTCCEEECCSSCCS----SCCTTTTTCSSCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCc----cCChhhccCCCcCEEECCCCc
Confidence 6788999988765432 113446778999999987655
No 20
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.92 E-value=9.3e-10 Score=115.16 Aligned_cols=181 Identities=13% Similarity=0.091 Sum_probs=113.6
Q ss_pred hceeeeEcc-----cccCCCccCCCCceEEEeccccccccccccCC-------CcccCCCccEEEeeceEecC-------
Q 013278 104 FQNGSVNEP-----IKLPRSLVTCESLVSLKLDFGNREHQGVLNLP-------TCVGFSRLKSLDLQHVESLD------- 164 (446)
Q Consensus 104 l~~L~l~~~-----~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~p-------~~~~~~~L~~L~L~~~~~~~------- 164 (446)
+++|++... ..++.....|++|++|+|++| .+... ....+++|++|+|+++.+.+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~------~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~ 213 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES------SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE 213 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC------EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc------cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH
Confidence 889988651 223333346899999999999 44331 12478999999999988862
Q ss_pred ---ccccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccC---CcceEEEe-ccccc
Q 013278 165 ---ISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFP---DLKILDIS-SNSLK 237 (446)
Q Consensus 165 ---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~---~~~~l~i~-~~~Lr 237 (446)
.+|++|++|++.+. .. ..+.. .+..+++|++|.+..+... ......+. .++|+
T Consensus 214 ~~~~~~~~L~~L~L~~~-----------~~--~~l~~-------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDF-----------EI--LELVG-------FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273 (592)
T ss_dssp HHHHHCTTCCEEECSSC-----------BG--GGGHH-------HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred HHHhhCCCCcEEeccCc-----------cH--HHHHH-------HHhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence 26899999999871 11 22333 7788999999999864311 00111112 36778
Q ss_pred eEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCce----eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHccc
Q 013278 238 SLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDF----TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNG 313 (446)
Q Consensus 238 ~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~----~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 313 (446)
+|.+.++.. .....+...+++|++|+++++..... .+..+++|+.+.+... .. ...+..+...
T Consensus 274 ~L~l~~~~~----~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~----~~-----~~~l~~~~~~ 340 (592)
T 3ogk_B 274 RLGLSYMGP----NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV----IG-----DRGLEVLAQY 340 (592)
T ss_dssp EEEETTCCT----TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG----GH-----HHHHHHHHHH
T ss_pred ccCccccch----hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc----cC-----HHHHHHHHHh
Confidence 877766432 22333344567888888887764321 1357788888877611 11 1223555566
Q ss_pred CCCccEEEEe
Q 013278 314 LRDVKVLKLS 323 (446)
Q Consensus 314 l~~l~~L~l~ 323 (446)
+++|+.|.++
T Consensus 341 ~~~L~~L~L~ 350 (592)
T 3ogk_B 341 CKQLKRLRIE 350 (592)
T ss_dssp CTTCCEEEEE
T ss_pred CCCCCEEEee
Confidence 7777777777
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.92 E-value=7e-10 Score=107.80 Aligned_cols=198 Identities=17% Similarity=0.120 Sum_probs=135.5
Q ss_pred CCCceEEEeccccccccccccC-C-CcccCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHHHh
Q 013278 122 CESLVSLKLDFGNREHQGVLNL-P-TCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEAL 199 (446)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~l~~-p-~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 199 (446)
.+++++|+|+++ .+.. | ....+++|++|+|+++.+.. +..
T Consensus 80 ~~~l~~L~L~~n------~l~~lp~~l~~l~~L~~L~L~~n~l~~-------------------------------lp~- 121 (328)
T 4fcg_A 80 QPGRVALELRSV------PLPQFPDQAFRLSHLQHMTIDAAGLME-------------------------------LPD- 121 (328)
T ss_dssp STTCCEEEEESS------CCSSCCSCGGGGTTCSEEEEESSCCCC-------------------------------CCS-
T ss_pred ccceeEEEccCC------CchhcChhhhhCCCCCEEECCCCCccc-------------------------------hhH-
Confidence 468999999999 5554 4 35579999999999887654 111
Q ss_pred hhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCC-CCce-----EEEecCceeeEEEecCC
Q 013278 200 KLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDEL-DNYK-----LKIACSNLESFNIFAPL 272 (446)
Q Consensus 200 ~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~-~~~~-----~~i~ap~L~~L~~~~~~ 272 (446)
.+..+++|++|+|.+|.+..... .+. .++|+.|++.+|...+... .... ..-..++|++|+++++.
T Consensus 122 ------~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 122 ------TMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194 (328)
T ss_dssp ------CGGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC
T ss_pred ------HHhccCCCCEEECCCCccccCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC
Confidence 46778999999999998653211 122 3799999999987654111 1110 12358999999999987
Q ss_pred CCce--eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceE
Q 013278 273 LPDF--TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSL 350 (446)
Q Consensus 273 ~~~~--~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L 350 (446)
...+ .+..+++|+.+++........ ...+..+++|+.|.++.+.+. ...+..+..+++|+.|
T Consensus 195 l~~lp~~l~~l~~L~~L~L~~N~l~~l----------~~~l~~l~~L~~L~Ls~n~~~------~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 195 IRSLPASIANLQNLKSLKIRNSPLSAL----------GPAIHHLPKLEELDLRGCTAL------RNYPPIFGGRAPLKRL 258 (328)
T ss_dssp CCCCCGGGGGCTTCCEEEEESSCCCCC----------CGGGGGCTTCCEEECTTCTTC------CBCCCCTTCCCCCCEE
T ss_pred cCcchHhhcCCCCCCEEEccCCCCCcC----------chhhccCCCCCEEECcCCcch------hhhHHHhcCCCCCCEE
Confidence 6433 366889999999875522211 334678899999999975442 1223345578899999
Q ss_pred EEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 351 ILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 351 ~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
++..+.....+ +.-+..+++|+.|+|..+.
T Consensus 259 ~L~~n~~~~~~---p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 259 ILKDCSNLLTL---PLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp ECTTCTTCCBC---CTTGGGCTTCCEEECTTCT
T ss_pred ECCCCCchhhc---chhhhcCCCCCEEeCCCCC
Confidence 99765432222 3346789999999997755
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.92 E-value=6.7e-11 Score=120.10 Aligned_cols=220 Identities=15% Similarity=0.146 Sum_probs=113.6
Q ss_pred hceeeeEc---ccccCCCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccc
Q 013278 104 FQNGSVNE---PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLK 171 (446)
Q Consensus 104 l~~L~l~~---~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~ 171 (446)
++.|++.. ....|..+..+++|++|+|+++ .+.. + .+..+++|++|+|+++.+.. ..+++|+
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN------SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSS------CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCC------ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 45555544 2222444555667777777766 3332 2 23356677777777665544 1356666
Q ss_pred cccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEE---Ee-ccccceEEEeeeecC
Q 013278 172 YLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILD---IS-SNSLKSLTLERIEFG 247 (446)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~---i~-~~~Lr~L~l~~~~~~ 247 (446)
+|++++ ..+..+ .+..+..+++|+.|++.+|.. ...+. +. .++|+.|.+.+|...
T Consensus 151 ~L~L~~----------------N~l~~~---~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 151 ELWLRN----------------NPIESI---PSYAFNRVPSLMRLDLGELKK--LEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp EEECCS----------------CCCCEE---CTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred EEECCC----------------CCccee---CHhHHhcCCcccEEeCCCCCC--ccccChhhccCCCCCCEEECCCCccc
Confidence 666665 222220 111355667777777766541 11111 11 256777777776654
Q ss_pred CCCCCCceEEEecCceeeEEEecCCCCce---eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEec
Q 013278 248 GDELDNYKLKIACSNLESFNIFAPLLPDF---TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSC 324 (446)
Q Consensus 248 ~~~~~~~~~~i~ap~L~~L~~~~~~~~~~---~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 324 (446)
. .. -....++|++|+++++....+ .+.++++|+.+++........ ....+..+++|+.|.++.
T Consensus 210 ~----~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 210 D----MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI---------ERNAFDGLASLVELNLAH 275 (452)
T ss_dssp S----CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE---------CTTTTTTCTTCCEEECCS
T ss_pred c----cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE---------CHHHhcCCCCCCEEECCC
Confidence 3 11 122346777777777655433 345666777766643211100 123456677777777776
Q ss_pred hhHHHHHHHhhhcccCCCccCccceEEEEeecC--cccHHhHHHHhhc
Q 013278 325 TLYQFLNAILEQRSYFSASFNNLKSLILCVTTA--EWTVPLIIRLLNH 370 (446)
Q Consensus 325 ~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~--~~~~l~l~~lL~~ 370 (446)
+.+.. .....+..+++|+.|++..+.. +.+..++..+++.
T Consensus 276 N~l~~------~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~ 317 (452)
T 3zyi_A 276 NNLSS------LPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLRE 317 (452)
T ss_dssp SCCSC------CCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHH
T ss_pred CcCCc------cChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHH
Confidence 65421 1122234566777777766532 2344444555543
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.92 E-value=6.7e-11 Score=119.70 Aligned_cols=220 Identities=14% Similarity=0.161 Sum_probs=120.3
Q ss_pred hceeeeEc--cccc-CCCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccc
Q 013278 104 FQNGSVNE--PIKL-PRSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLK 171 (446)
Q Consensus 104 l~~L~l~~--~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~ 171 (446)
++.|++.. ...+ +..+..+++|++|+|+++ .+.. + .+..+++|++|+|+++.+.. ..+++|+
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n------~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN------HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSS------CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC------cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 45666654 2222 344556777777777777 4433 2 23467777777777776554 2466677
Q ss_pred cccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEE---Ee-ccccceEEEeeeecC
Q 013278 172 YLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILD---IS-SNSLKSLTLERIEFG 247 (446)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~---i~-~~~Lr~L~l~~~~~~ 247 (446)
+|++++ ..+..+ .+..+..+++|+.|+|.+|.. ...+. +. .++|+.|.+.+|...
T Consensus 140 ~L~L~~----------------N~i~~~---~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 140 ELWLRN----------------NPIESI---PSYAFNRIPSLRRLDLGELKR--LSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp EEECCS----------------CCCCEE---CTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred eeeCCC----------------Cccccc---CHHHhhhCcccCEeCCCCCCC--cceeCcchhhcccccCeecCCCCcCc
Confidence 777765 332220 111456677777777776541 11111 11 267777777777654
Q ss_pred CCCCCCceEEEecCceeeEEEecCCCCce---eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEec
Q 013278 248 GDELDNYKLKIACSNLESFNIFAPLLPDF---TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSC 324 (446)
Q Consensus 248 ~~~~~~~~~~i~ap~L~~L~~~~~~~~~~---~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 324 (446)
. ... ....++|++|+++++....+ .+..+++|+.+++........ ....+..+++|+.|.++.
T Consensus 199 ~----~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 199 E----IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI---------ERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp S----CCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---------CTTSSTTCTTCCEEECTT
T ss_pred c----ccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE---------ChhhhcCCCCCCEEECCC
Confidence 3 111 22456777777777755433 345667777776643211110 123456677777887776
Q ss_pred hhHHHHHHHhhhcccCCCccCccceEEEEeecC--cccHHhHHHHhhc
Q 013278 325 TLYQFLNAILEQRSYFSASFNNLKSLILCVTTA--EWTVPLIIRLLNH 370 (446)
Q Consensus 325 ~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~--~~~~l~l~~lL~~ 370 (446)
+.+.. .....+..+++|+.|++..+.. +.+..++..+++.
T Consensus 265 N~l~~------~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~ 306 (440)
T 3zyj_A 265 NNLTL------LPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKD 306 (440)
T ss_dssp SCCCC------CCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHT
T ss_pred CCCCc------cChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHh
Confidence 65421 1222244566777777776542 3344445666654
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.92 E-value=7.2e-10 Score=112.89 Aligned_cols=146 Identities=15% Similarity=0.154 Sum_probs=82.6
Q ss_pred cccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCce-eecCCCCc
Q 013278 207 IDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDF-TLESLNSL 284 (446)
Q Consensus 207 l~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~-~l~~~p~L 284 (446)
+..+++|+.|++.+|...+... +. .++|+.|.+.+|...+ ... ....++|++|+++++....+ .+..+++|
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 311 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN----ISP-LAGLTALTNLELNENQLEDISPISNLKNL 311 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC----CGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTC
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc----ccc-ccCCCccCeEEcCCCcccCchhhcCCCCC
Confidence 3456667777776666544332 22 2567777777665533 111 22456777777777654322 25566777
Q ss_pred eEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhH
Q 013278 285 QNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLI 364 (446)
Q Consensus 285 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l 364 (446)
+.+++....-.+. . .+..+++++.|.++.+.+.. ...+..+++|+.|++..+... +..
T Consensus 312 ~~L~L~~n~l~~~----------~-~~~~l~~L~~L~l~~n~l~~--------~~~l~~l~~L~~L~l~~n~l~-~~~-- 369 (466)
T 1o6v_A 312 TYLTLYFNNISDI----------S-PVSSLTKLQRLFFYNNKVSD--------VSSLANLTNINWLSAGHNQIS-DLT-- 369 (466)
T ss_dssp SEEECCSSCCSCC----------G-GGGGCTTCCEEECCSSCCCC--------CGGGTTCTTCCEEECCSSCCC-BCG--
T ss_pred CEEECcCCcCCCc----------h-hhccCccCCEeECCCCccCC--------chhhccCCCCCEEeCCCCccC-ccc--
Confidence 7777654321111 1 14567778888777664421 112456777888877654322 222
Q ss_pred HHHhhcCCCCcEEEEEecC
Q 013278 365 IRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 365 ~~lL~~~P~Le~L~l~~~~ 383 (446)
+ +..+|+|+.|.+....
T Consensus 370 ~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 370 P--LANLTRITQLGLNDQA 386 (466)
T ss_dssp G--GTTCTTCCEEECCCEE
T ss_pred h--hhcCCCCCEEeccCCc
Confidence 2 6778888888876654
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.91 E-value=8.5e-10 Score=116.03 Aligned_cols=250 Identities=15% Similarity=0.124 Sum_probs=134.7
Q ss_pred hceeeeEc--ccccC-CCccCCCCceEEEeccccccccccccC--CC-cccCCCccEEEeeceEecC------ccccccc
Q 013278 104 FQNGSVNE--PIKLP-RSLVTCESLVSLKLDFGNREHQGVLNL--PT-CVGFSRLKSLDLQHVESLD------ISTTSLK 171 (446)
Q Consensus 104 l~~L~l~~--~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~l~~--p~-~~~~~~L~~L~L~~~~~~~------~~~~~L~ 171 (446)
++.|++.. ...+| ..+..+++|++|+|+++ .+.. |. ...+++|++|+|+++.+.. .++++|+
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCC------cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 56666654 22333 35556777777777777 4443 22 3467777777777776554 2466777
Q ss_pred cccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcc--------eE--------EEe-cc
Q 013278 172 YLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLK--------IL--------DIS-SN 234 (446)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~--------~l--------~i~-~~ 234 (446)
+|++++ ..+.. ..+..+..+++|+.|+|.+|.+.+.. .+ .+. .+
T Consensus 151 ~L~Ls~----------------N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~ 211 (597)
T 3oja_B 151 TLSMSN----------------NNLER---IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI 211 (597)
T ss_dssp EEECCS----------------SCCCB---CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCT
T ss_pred EEEeeC----------------CcCCC---CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCc
Confidence 777766 22211 11123456666777777666543211 00 001 13
Q ss_pred ccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCce-eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHccc
Q 013278 235 SLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDF-TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNG 313 (446)
Q Consensus 235 ~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~-~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 313 (446)
+|+.|++.+|..... .....++|+.|.++++....+ .+..+++|+.+++........ ....+..
T Consensus 212 ~L~~L~ls~n~l~~~------~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~---------~~~~~~~ 276 (597)
T 3oja_B 212 AVEELDASHNSINVV------RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI---------MYHPFVK 276 (597)
T ss_dssp TCSEEECCSSCCCEE------ECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE---------ESGGGTT
T ss_pred hhheeeccCCccccc------ccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC---------CHHHhcC
Confidence 445555544443210 001124677777777655332 355677787777754321111 1345667
Q ss_pred CCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecCCCCCCCCCCC
Q 013278 314 LRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIP 393 (446)
Q Consensus 314 l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~~~~~~~w~~~ 393 (446)
+++|+.|.++.+.+.. .+.....+++|+.|++..+.... + +.-+..+|+|+.|++....- . .
T Consensus 277 l~~L~~L~Ls~N~l~~-------l~~~~~~l~~L~~L~Ls~N~l~~-i---~~~~~~l~~L~~L~L~~N~l---~---~- 338 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSHNHLLH-V---ERNQPQFDRLENLYLDHNSI---V---T- 338 (597)
T ss_dssp CSSCCEEECTTSCCCE-------EECSSSCCTTCCEEECCSSCCCC-C---GGGHHHHTTCSEEECCSSCC---C---C-
T ss_pred ccCCCEEECCCCCCCC-------CCcccccCCCCcEEECCCCCCCc-c---CcccccCCCCCEEECCCCCC---C---C-
Confidence 7888888887765421 12223357788888887654331 1 22345678888888876551 1 0
Q ss_pred CCccccccccccceeEEecCCCH
Q 013278 394 DKVILCLTCHLKTVELIDFSGNE 416 (446)
Q Consensus 394 ~~~~~~~~c~~~~L~~v~f~g~~ 416 (446)
.+...+.+|+.+.+.|..
T Consensus 339 -----~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 339 -----LKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp -----CCCCTTCCCSEEECCSSC
T ss_pred -----cChhhcCCCCEEEeeCCC
Confidence 111233678888666654
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.90 E-value=2.7e-11 Score=117.02 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=45.9
Q ss_pred hceeeeEc---cc--ccCCCccCCCCceEEEecc-ccccccccccC--C-CcccCCCccEEEeeceEecC------cccc
Q 013278 104 FQNGSVNE---PI--KLPRSLVTCESLVSLKLDF-GNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTT 168 (446)
Q Consensus 104 l~~L~l~~---~~--~lp~~l~~~~~L~~L~L~~-~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~ 168 (446)
+++|++.. .. .+|..+..+++|++|+|++ + .+.. | ....+++|++|+|+++.+.+ ..++
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n------~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET------TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC------cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 56777765 22 6788888888999999985 5 3432 4 34578899999998887763 1355
Q ss_pred ccccccchh
Q 013278 169 SLKYLTVDE 177 (446)
Q Consensus 169 ~L~~L~l~~ 177 (446)
+|++|+++.
T Consensus 126 ~L~~L~Ls~ 134 (313)
T 1ogq_A 126 TLVTLDFSY 134 (313)
T ss_dssp TCCEEECCS
T ss_pred CCCEEeCCC
Confidence 555555554
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.90 E-value=5.6e-10 Score=110.91 Aligned_cols=276 Identities=14% Similarity=0.065 Sum_probs=156.5
Q ss_pred hceeeeEc--ccccCCCc-cCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccc
Q 013278 104 FQNGSVNE--PIKLPRSL-VTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLK 171 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l-~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~ 171 (446)
++.+++.. ...+|..+ ..+++|++|+|+++ .+.. + ....+++|++|+|+++.+.+ ..+++|+
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTS------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCC------cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 57777765 45677664 45899999999999 5544 2 45689999999999998765 2688999
Q ss_pred cccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCC
Q 013278 172 YLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDE 250 (446)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~ 250 (446)
+|++++ ..+..+ .+.++..+++|++|++.+|...+...-.+. .++|+.|.+.+|......
T Consensus 121 ~L~L~~----------------n~l~~l---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 121 VLVLER----------------NDLSSL---PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp EEECCS----------------SCCCCC---CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred EEECCC----------------CccCcC---CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 999987 333321 111467899999999999976543222222 389999999998764310
Q ss_pred C----CCceEE---------EecCceeeEEEecCCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCc
Q 013278 251 L----DNYKLK---------IACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDV 317 (446)
Q Consensus 251 ~----~~~~~~---------i~ap~L~~L~~~~~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l 317 (446)
. .+..+. -..++|++|.++++....+.....++|+.+++......+ ...+..++++
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-----------~~~l~~l~~L 250 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-----------TAWLLNYPGL 250 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-----------CGGGGGCTTC
T ss_pred cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-----------cHHHcCCCCc
Confidence 0 000000 112334444444444433333334455555554321110 1345667777
Q ss_pred cEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecCCCCCCCCCCCCCcc
Q 013278 318 KVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVI 397 (446)
Q Consensus 318 ~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~~~~~~~w~~~~~~~ 397 (446)
+.|.++.+.+.. ..+..+..+++|++|++..+.... + ......+|+|+.|++....- . ..+ .
T Consensus 251 ~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~--~--~~~~~~l~~L~~L~L~~n~l---~--~~~---~ 312 (390)
T 3o6n_A 251 VEVDLSYNELEK------IMYHPFVKMQRLERLYISNNRLVA--L--NLYGQPIPTLKVLDLSHNHL---L--HVE---R 312 (390)
T ss_dssp SEEECCSSCCCE------EESGGGTTCSSCCEEECCSSCCCE--E--ECSSSCCTTCCEEECCSSCC---C--CCG---G
T ss_pred cEEECCCCcCCC------cChhHccccccCCEEECCCCcCcc--c--CcccCCCCCCCEEECCCCcc---e--ecC---c
Confidence 777777664421 122234456677777776543221 1 12234567777777765441 1 011 0
Q ss_pred ccccccccceeEEecCCCHhHHHHHHHHHhcCccccceEEEc
Q 013278 398 LCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKLRVSW 439 (446)
Q Consensus 398 ~~~~c~~~~L~~v~f~g~~~e~~~~~~ll~~a~~L~~~~i~~ 439 (446)
.. ..+.+|+.+...+..-. . .-+...+.|+.+.+..
T Consensus 313 ~~--~~l~~L~~L~L~~N~i~-~---~~~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 313 NQ--PQFDRLENLYLDHNSIV-T---LKLSTHHTLKNLTLSH 348 (390)
T ss_dssp GH--HHHTTCSEEECCSSCCC-C---CCCCTTCCCSEEECCS
T ss_pred cc--cccCcCCEEECCCCccc-e---eCchhhccCCEEEcCC
Confidence 11 12357777744443210 0 0145566777766643
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.89 E-value=1.2e-10 Score=122.48 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=17.9
Q ss_pred ccCccceEEEEeecCcc-cHHhHHHHhhcCCCCcEEEEEec
Q 013278 343 SFNNLKSLILCVTTAEW-TVPLIIRLLNHSPNLEVLTIYFD 382 (446)
Q Consensus 343 ~f~~L~~L~l~~~~~~~-~~l~l~~lL~~~P~Le~L~l~~~ 382 (446)
.+++|++|++..+.... ... ...+..+++|+.|++...
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~--~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCC--NLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEES--TTTTTTCTTCCEEECCSC
T ss_pred ccCcCCEEECCCCccccccCc--chhcccCCCCCEEECCCC
Confidence 44555555555432211 100 223456666776666544
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.89 E-value=2.2e-10 Score=111.26 Aligned_cols=156 Identities=11% Similarity=0.058 Sum_probs=79.3
Q ss_pred hceeeeEc--cccc-CCCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC---cccccccccc
Q 013278 104 FQNGSVNE--PIKL-PRSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD---ISTTSLKYLT 174 (446)
Q Consensus 104 l~~L~l~~--~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~---~~~~~L~~L~ 174 (446)
++.|++.. ...+ |..+..+++|++|+|+++ .+.. | ....+++|++|+|+++.+.. ...++|++|+
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~ 129 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNN------KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR 129 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS------CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEE
T ss_pred CeEEECCCCcCCccCHhHhhCCCCCcEEECCCC------ccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEE
Confidence 35555544 2223 334555677777777766 4433 2 23356777777777666543 1235666666
Q ss_pred chhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCC--cceEEEeccccceEEEeeeecCCCCCC
Q 013278 175 VDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPD--LKILDISSNSLKSLTLERIEFGGDELD 252 (446)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~--~~~l~i~~~~Lr~L~l~~~~~~~~~~~ 252 (446)
+.+ ..+.. ..+..+..+++|+.|++.+|.... ...-.+...+|+.|.+.+|........
T Consensus 130 l~~----------------n~i~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~ 190 (332)
T 2ft3_A 130 IHD----------------NRIRK---VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD 190 (332)
T ss_dssp CCS----------------SCCCC---CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS
T ss_pred CCC----------------CccCc---cCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcc
Confidence 665 22221 111135667777777777765421 111111122666777766665431111
Q ss_pred CceEEEecCceeeEEEecCCCCce---eecCCCCceEEEEE
Q 013278 253 NYKLKIACSNLESFNIFAPLLPDF---TLESLNSLQNAFIF 290 (446)
Q Consensus 253 ~~~~~i~ap~L~~L~~~~~~~~~~---~l~~~p~L~~l~l~ 290 (446)
. .++|++|.++++..... .+..+++|+.+++.
T Consensus 191 ~------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 191 L------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp S------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred c------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 1 15677777666654332 24455555555554
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.89 E-value=2.1e-10 Score=119.45 Aligned_cols=222 Identities=20% Similarity=0.126 Sum_probs=137.8
Q ss_pred cccCCCccCCCCceEEEeccccccccccccC-CC-cccCCCccEEEeeceEecC---ccccccccccchhhcccCcccCc
Q 013278 113 IKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PT-CVGFSRLKSLDLQHVESLD---ISTTSLKYLTVDEFLLSEPKGLR 187 (446)
Q Consensus 113 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~-~~~~~~L~~L~L~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~ 187 (446)
...|..+..+++|++|++.++ .+.. |. ...+ +|++|++.++.+.. ..+++|++|.+.+
T Consensus 272 ~~~~~~~~~l~~L~~L~l~~~------~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~---------- 334 (570)
T 2z63_A 272 DDIIDLFNCLTNVSSFSLVSV------TIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTS---------- 334 (570)
T ss_dssp SCSTTTTGGGTTCSEEEEESC------EECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEES----------
T ss_pred hhchhhhcCcCcccEEEecCc------cchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcC----------
Confidence 345666667888888988888 4443 32 3345 88888888887654 3577888888876
Q ss_pred cchhhhhhHHHhhhccccccccCcccccccccccccCCcceEE--E-eccccceEEEeeeecCCCCCCCceEEEecCcee
Q 013278 188 SCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILD--I-SSNSLKSLTLERIEFGGDELDNYKLKIACSNLE 264 (446)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~--i-~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~ 264 (446)
..+.. .+ -...+|+|+.|++.+|...+..... + ..++|+.|++.+|.... ........++|+
T Consensus 335 ------n~~~~---~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~l~~L~ 399 (570)
T 2z63_A 335 ------NKGGN---AF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT----MSSNFLGLEQLE 399 (570)
T ss_dssp ------CBSCC---BC--CCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE----EEEEEETCTTCC
T ss_pred ------Ccccc---cc--ccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc----ccccccccCCCC
Confidence 22211 11 1157888888888888644322111 1 13788888888876532 222244678888
Q ss_pred eEEEecCCCCc----eeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccC
Q 013278 265 SFNIFAPLLPD----FTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYF 340 (446)
Q Consensus 265 ~L~~~~~~~~~----~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~ 340 (446)
+|.+.++.... ..+..+++|+.+++....... .....+..+++++.|.++.+.+.. ...+..
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~l~~n~l~~-----~~~p~~ 465 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV---------AFNGIFNGLSSLEVLKMAGNSFQE-----NFLPDI 465 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE---------CCTTTTTTCTTCCEEECTTCEEGG-----GEECSC
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCcccc---------cchhhhhcCCcCcEEECcCCcCcc-----ccchhh
Confidence 88888764321 235677888888775331111 013456778889999888765421 112234
Q ss_pred CCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 341 SASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 341 ~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
+..+++|+.|++..+... +.. +..+..+|+|+.|++....
T Consensus 466 ~~~l~~L~~L~l~~n~l~-~~~--~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLE-QLS--PTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp CTTCTTCCEEECTTSCCC-EEC--TTTTTTCTTCCEEECCSSC
T ss_pred hhcccCCCEEECCCCccc-cCC--hhhhhcccCCCEEeCCCCc
Confidence 557788888888765332 111 3456678899999887654
No 31
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.88 E-value=1.4e-10 Score=125.71 Aligned_cols=68 Identities=21% Similarity=0.073 Sum_probs=43.1
Q ss_pred hceeeeEc---ccccCCCccC--CCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccc
Q 013278 104 FQNGSVNE---PIKLPRSLVT--CESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTS 169 (446)
Q Consensus 104 l~~L~l~~---~~~lp~~l~~--~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~ 169 (446)
++.|++.. ...+|..+.. +++|++|+|++| .+.. | ....+++|++|+|+++.+.+ ..+++
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 443 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN------GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS------EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCC------ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC
Confidence 67777755 3344555544 567788888777 4432 3 23467777777777777654 24667
Q ss_pred cccccchh
Q 013278 170 LKYLTVDE 177 (446)
Q Consensus 170 L~~L~l~~ 177 (446)
|+.|++.+
T Consensus 444 L~~L~L~~ 451 (768)
T 3rgz_A 444 LRDLKLWL 451 (768)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 77777765
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.88 E-value=5.5e-10 Score=113.31 Aligned_cols=224 Identities=16% Similarity=0.089 Sum_probs=149.9
Q ss_pred cccCCCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccccccchhhcccCc
Q 013278 113 IKLPRSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEP 183 (446)
Q Consensus 113 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~ 183 (446)
..+|..+. +++++|+|+++ .+.. + ....+++|++|+|+++.+.+ .++++|++|++++
T Consensus 67 ~~iP~~~~--~~l~~L~L~~n------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~------ 132 (452)
T 3zyi_A 67 SEVPQGIP--SNTRYLNLMEN------NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD------ 132 (452)
T ss_dssp SSCCSCCC--TTCSEEECCSS------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS------
T ss_pred CccCCCCC--CCccEEECcCC------cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC------
Confidence 34555433 58999999999 5543 3 35589999999999987655 2588999999987
Q ss_pred ccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCc
Q 013278 184 KGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSN 262 (446)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~ 262 (446)
..+.. ..+..+..+++|++|+|.+|.+.....-.+. .++|+.|++.+|..... -........++
T Consensus 133 ----------n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~--i~~~~~~~l~~ 197 (452)
T 3zyi_A 133 ----------NWLTV---IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY--ISEGAFEGLFN 197 (452)
T ss_dssp ----------SCCSB---CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE--ECTTTTTTCTT
T ss_pred ----------CcCCc---cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc--cChhhccCCCC
Confidence 43332 1122567899999999999975432211122 37999999998654220 00001124689
Q ss_pred eeeEEEecCCCCc-eeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCC
Q 013278 263 LESFNIFAPLLPD-FTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFS 341 (446)
Q Consensus 263 L~~L~~~~~~~~~-~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~ 341 (446)
|++|+++++.... ..+..+++|+.+++........ ....+..+++|+.|.++.+.+.. ..+..+
T Consensus 198 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~ 262 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI---------RPGSFHGLSSLKKLWVMNSQVSL------IERNAF 262 (452)
T ss_dssp CCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE---------CGGGGTTCTTCCEEECTTSCCCE------ECTTTT
T ss_pred CCEEECCCCcccccccccccccccEEECcCCcCccc---------CcccccCccCCCEEEeCCCcCce------ECHHHh
Confidence 9999999987643 2466788999988854321111 14457889999999998876531 223346
Q ss_pred CccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 342 ASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 342 p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
..+++|+.|++..+... ... ...+..+++|+.|++..++
T Consensus 263 ~~l~~L~~L~L~~N~l~-~~~--~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 263 DGLASLVELNLAHNNLS-SLP--HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSSCCS-CCC--TTSSTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCcCC-ccC--hHHhccccCCCEEEccCCC
Confidence 67889999999876432 222 3456788999999998765
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.87 E-value=1.8e-10 Score=112.95 Aligned_cols=242 Identities=12% Similarity=0.102 Sum_probs=127.4
Q ss_pred hceeeeEc--ccccCC-CccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccc
Q 013278 104 FQNGSVNE--PIKLPR-SLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLK 171 (446)
Q Consensus 104 l~~L~l~~--~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~ 171 (446)
+++|++.. ...+|. .+..+++|++|+|+++ .+.. + ....+++|++|+|+++.+.+ ..+++|+
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSN------GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTS------CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCC------ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 56777765 334444 5667889999999988 5543 3 24578899999999887765 2578888
Q ss_pred cccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccc-cCCcceEEEe-ccccceEEEeeeecCCC
Q 013278 172 YLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCC-FPDLKILDIS-SNSLKSLTLERIEFGGD 249 (446)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~-~~~~~~l~i~-~~~Lr~L~l~~~~~~~~ 249 (446)
+|++++ ..+..+.. ...+..+++|+.|++.+|. ......-.+. .++|+.|++.+|...+.
T Consensus 128 ~L~L~~----------------n~l~~l~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 128 FLNLLG----------------NPYKTLGE--TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp EEECTT----------------CCCSSSCS--SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred EEECCC----------------CCCcccCc--hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 888887 33332110 0146678888888888873 2211111111 26788888888765320
Q ss_pred CCCCceEEEecCceeeEEEecCCCCcee---ecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechh
Q 013278 250 ELDNYKLKIACSNLESFNIFAPLLPDFT---LESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTL 326 (446)
Q Consensus 250 ~~~~~~~~i~ap~L~~L~~~~~~~~~~~---l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 326 (446)
........++|++|.++++....+. +..+++|+.+++....-..... .........+.++.+.+....
T Consensus 190 ---~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~------~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 190 ---EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF------SELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp ---CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC------C------CCCCCCEEEEESCB
T ss_pred ---CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc------cccccccccchhhcccccccc
Confidence 0011113467777777776543221 2346777777775442111100 001112234445555555433
Q ss_pred HHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 327 YQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 327 ~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
+.... .. ..+..+..+++|+.|++..+... .+. ..++..+|+|+.|++...+
T Consensus 261 l~~~~-l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~--~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 261 ITDES-LF-QVMKLLNQISGLLELEFSRNQLK-SVP--DGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCHHH-HH-HHHHHHHTCTTCCEEECCSSCCC-CCC--TTTTTTCTTCCEEECCSSC
T ss_pred ccCcc-hh-hhHHHHhcccCCCEEECCCCCCC-ccC--HHHHhcCCCCCEEEeeCCC
Confidence 21100 00 00111334556666666544322 111 2234556666666665544
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.87 E-value=6.1e-10 Score=112.57 Aligned_cols=224 Identities=15% Similarity=0.114 Sum_probs=145.9
Q ss_pred cccCCCccCCCCceEEEeccccccccccccC---CCcccCCCccEEEeeceEecC------ccccccccccchhhcccCc
Q 013278 113 IKLPRSLVTCESLVSLKLDFGNREHQGVLNL---PTCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEP 183 (446)
Q Consensus 113 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~---p~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~ 183 (446)
..+|..+. ++++.|+|+++ .+.. .....+++|++|+|+++.+.+ .++++|++|++++
T Consensus 56 ~~iP~~~~--~~l~~L~L~~n------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~------ 121 (440)
T 3zyj_A 56 REVPDGIS--TNTRLLNLHEN------QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD------ 121 (440)
T ss_dssp SSCCSCCC--TTCSEEECCSC------CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS------
T ss_pred CcCCCCCC--CCCcEEEccCC------cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC------
Confidence 34565443 57899999998 5543 235578999999999987654 2588899999987
Q ss_pred ccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCc
Q 013278 184 KGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSN 262 (446)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~ 262 (446)
..+..+ .+..+..+++|++|+|.+|.+.......+. .++|+.|++.+|..... -........++
T Consensus 122 ----------n~l~~~---~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~--i~~~~~~~l~~ 186 (440)
T 3zyj_A 122 ----------NRLTTI---PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY--ISEGAFEGLSN 186 (440)
T ss_dssp ----------SCCSSC---CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE--ECTTTTTTCSS
T ss_pred ----------CcCCee---CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce--eCcchhhcccc
Confidence 443321 112467889999999999875432211122 37899999988653220 00001123678
Q ss_pred eeeEEEecCCCCce-eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCC
Q 013278 263 LESFNIFAPLLPDF-TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFS 341 (446)
Q Consensus 263 L~~L~~~~~~~~~~-~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~ 341 (446)
|++|.++++....+ .+..+++|+.+++........ ....+..+++|+.|.++.+.+.. ..+..+
T Consensus 187 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~ 251 (440)
T 3zyj_A 187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI---------RPGSFQGLMHLQKLWMIQSQIQV------IERNAF 251 (440)
T ss_dssp CCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE---------CTTTTTTCTTCCEEECTTCCCCE------ECTTSS
T ss_pred cCeecCCCCcCccccccCCCcccCEEECCCCccCcc---------ChhhhccCccCCEEECCCCceeE------EChhhh
Confidence 99999998866432 456778888888754321111 13456788999999998765532 223345
Q ss_pred CccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 342 ASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 342 p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
..+++|+.|+|..+... ... ...+..+++|+.|++..++
T Consensus 252 ~~l~~L~~L~L~~N~l~-~~~--~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 DNLQSLVEINLAHNNLT-LLP--HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTSCCC-CCC--TTTTSSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCCCC-ccC--hhHhccccCCCEEEcCCCC
Confidence 67788999998765432 222 3456778999999997765
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.87 E-value=2.4e-10 Score=123.78 Aligned_cols=57 Identities=23% Similarity=0.131 Sum_probs=29.6
Q ss_pred cCCCccCCCCceEEEeccccccccccccC--C---CcccCCCccEEEeeceEecC-------ccccccccccchh
Q 013278 115 LPRSLVTCESLVSLKLDFGNREHQGVLNL--P---TCVGFSRLKSLDLQHVESLD-------ISTTSLKYLTVDE 177 (446)
Q Consensus 115 lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p---~~~~~~~L~~L~L~~~~~~~-------~~~~~L~~L~l~~ 177 (446)
+|..+..+++|++|+|+++ .+.. | ....+++|++|+|+++.+.+ ..+++|++|++++
T Consensus 92 l~~~~~~l~~L~~L~Ls~n------~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRN------SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp CCCCCCCCTTCCEEECCSS------EEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred CchhhccCCCCCEEECCCC------cCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 3455555666666666665 3321 1 22355566666666555432 1355555555554
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.87 E-value=3e-10 Score=119.34 Aligned_cols=152 Identities=16% Similarity=0.068 Sum_probs=81.3
Q ss_pred ccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCC-CCceeecCCCCce
Q 013278 208 DSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPL-LPDFTLESLNSLQ 285 (446)
Q Consensus 208 ~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~-~~~~~l~~~p~L~ 285 (446)
..+++|+.|++.++...... .+. .++|+.|.+.+|.... ...+ ..|+|++|.+.++. .....+..+++|+
T Consensus 282 ~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~----lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 353 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQ----FPTL--DLPFLKSLTLTMNKGSISFKKVALPSLS 353 (606)
T ss_dssp GGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSS----CCCC--CCSSCCEEEEESCSSCEECCCCCCTTCC
T ss_pred ccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCcc----cccC--CCCccceeeccCCcCccchhhccCCCCC
Confidence 34556666666665543322 222 2578888888887632 2333 77888888888873 3334556778888
Q ss_pred EEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHH
Q 013278 286 NAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLII 365 (446)
Q Consensus 286 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~ 365 (446)
.+++....-.... .....+..+++++.|.++.+.+.. .+..+..+++|+.|++..+....... .
T Consensus 354 ~L~ls~n~l~~~~-------~~~~~~~~~~~L~~L~L~~n~l~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~--~ 417 (606)
T 3vq2_A 354 YLDLSRNALSFSG-------CCSYSDLGTNSLRHLDLSFNGAII-------MSANFMGLEELQHLDFQHSTLKRVTE--F 417 (606)
T ss_dssp EEECCSSCEEEEE-------ECCHHHHCCSCCCEEECCSCSEEE-------ECCCCTTCTTCCEEECTTSEEESTTT--T
T ss_pred EEECcCCccCCCc-------chhhhhccCCcccEeECCCCcccc-------chhhccCCCCCCeeECCCCccCCccC--h
Confidence 8877533110000 002334567777777777654321 11234456666666665432211110 1
Q ss_pred HHhhcCCCCcEEEEEecC
Q 013278 366 RLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 366 ~lL~~~P~Le~L~l~~~~ 383 (446)
..+..+++|+.|++....
T Consensus 418 ~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp TTTTTCTTCCEEECTTSC
T ss_pred hhhhccccCCEEECcCCC
Confidence 244566666666665433
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.86 E-value=9.8e-10 Score=115.55 Aligned_cols=270 Identities=14% Similarity=0.064 Sum_probs=155.4
Q ss_pred hceeeeEc--ccccCCCcc-CCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccc
Q 013278 104 FQNGSVNE--PIKLPRSLV-TCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLK 171 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~ 171 (446)
++.+++.. ...+|..++ .+++|++|+|+++ .+.. | ....+++|++|+|+++.+.+ +++++|+
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTS------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC------CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 45555544 445666544 4899999999999 5544 3 45689999999999998766 3689999
Q ss_pred cccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCC
Q 013278 172 YLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDE 250 (446)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~ 250 (446)
+|++++ ..+.. ..+.++..+++|+.|+|.+|.+.+...-.+. .++|+.|.+.+|...+.
T Consensus 127 ~L~L~~----------------n~l~~---l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~- 186 (597)
T 3oja_B 127 VLVLER----------------NDLSS---LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV- 186 (597)
T ss_dssp EEECCS----------------SCCCC---CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-
T ss_pred EEEeeC----------------CCCCC---CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-
Confidence 999988 33332 1112568899999999999986543322232 37899999998876431
Q ss_pred CCCceEEEecCceeeEEEecC-------------------CCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHc
Q 013278 251 LDNYKLKIACSNLESFNIFAP-------------------LLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKIL 311 (446)
Q Consensus 251 ~~~~~~~i~ap~L~~L~~~~~-------------------~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 311 (446)
+. ...|+|+.|.++++ ....+.....++|+.+.+......+ ...+
T Consensus 187 -~~----~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-----------~~~l 250 (597)
T 3oja_B 187 -DL----SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-----------TAWL 250 (597)
T ss_dssp -CG----GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-----------CGGG
T ss_pred -Ch----hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-----------Chhh
Confidence 11 11344555554444 3332222233445555543321110 2345
Q ss_pred ccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecCCCCCCCCC
Q 013278 312 NGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWE 391 (446)
Q Consensus 312 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~~~~~~~w~ 391 (446)
..+++|+.|.++.+.+. ...+..+..+++|+.|++..+.... +......+|+|+.|++..+.- . .
T Consensus 251 ~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~L~~L~Ls~N~l---~--~ 315 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELE------KIMYHPFVKMQRLERLYISNNRLVA----LNLYGQPIPTLKVLDLSHNHL---L--H 315 (597)
T ss_dssp GGCTTCSEEECCSSCCC------EEESGGGTTCSSCCEEECTTSCCCE----EECSSSCCTTCCEEECCSSCC---C--C
T ss_pred ccCCCCCEEECCCCccC------CCCHHHhcCccCCCEEECCCCCCCC----CCcccccCCCCcEEECCCCCC---C--c
Confidence 66777788877766542 1122334466777777776543221 122335577888887765541 1 1
Q ss_pred CCCCccccccccccceeEEecCCCHhHHHHHHHHHhcCccccceEEEc
Q 013278 392 IPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKLRVSW 439 (446)
Q Consensus 392 ~~~~~~~~~~c~~~~L~~v~f~g~~~e~~~~~~ll~~a~~L~~~~i~~ 439 (446)
.+ ... ..+.+|+.+...+..-. ..-+...+.|+.+.+..
T Consensus 316 i~---~~~--~~l~~L~~L~L~~N~l~----~~~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 316 VE---RNQ--PQFDRLENLYLDHNSIV----TLKLSTHHTLKNLTLSH 354 (597)
T ss_dssp CG---GGH--HHHTTCSEEECCSSCCC----CCCCCTTCCCSEEECCS
T ss_pred cC---ccc--ccCCCCCEEECCCCCCC----CcChhhcCCCCEEEeeC
Confidence 11 011 22367777744443210 00145556777766643
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.85 E-value=3e-10 Score=119.43 Aligned_cols=235 Identities=15% Similarity=0.092 Sum_probs=129.0
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC----ccccccccccch
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD----ISTTSLKYLTVD 176 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~ 176 (446)
++.+++.. ...+| .+..+++|++|++.+| .+.. |.. .+++|++|++.++.... ..+++|++|+++
T Consensus 287 L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n------~l~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls 358 (606)
T 3vq2_A 287 VSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC------QLKQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLS 358 (606)
T ss_dssp CSEEEEESCCCCCCC-CCCTTCCCSEEEEESC------CCSSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECC
T ss_pred CCEEEecCccchhhh-hccccccCCEEEcccc------cCcccccC-CCCccceeeccCCcCccchhhccCCCCCEEECc
Confidence 55555544 33444 5556677777777777 4433 433 77777777777763221 357777777776
Q ss_pred hhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCce
Q 013278 177 EFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYK 255 (446)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~ 255 (446)
+ ..+... ...+..+..++.|+.|++.+|...+.. -.+. .++|+.|.+.+|...+. ....
T Consensus 359 ~----------------n~l~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~ 418 (606)
T 3vq2_A 359 R----------------NALSFS-GCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRV--TEFS 418 (606)
T ss_dssp S----------------SCEEEE-EECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEEST--TTTT
T ss_pred C----------------CccCCC-cchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCc--cChh
Confidence 6 222110 000114567778888888777633211 1111 36788888877765431 0001
Q ss_pred EEEecCceeeEEEecCCCCce---eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHH
Q 013278 256 LKIACSNLESFNIFAPLLPDF---TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNA 332 (446)
Q Consensus 256 ~~i~ap~L~~L~~~~~~~~~~---~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~ 332 (446)
.....++|++|+++++..... .+..+++|+.+++......+ ......++.+++++.|.++.+.+.
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~Ls~n~l~---- 486 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD--------NTLSNVFANTTNLTFLDLSKCQLE---- 486 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG--------GEECSCCTTCTTCCEEECTTSCCC----
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC--------cchHHhhccCCCCCEEECCCCcCC----
Confidence 122456778887777654321 24566777777764331100 001344567777888887766442
Q ss_pred HhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 333 ILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 333 ~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
...+..+..+++|++|++..+.... .. +..+..+++|+.|++....
T Consensus 487 --~~~~~~~~~l~~L~~L~Ls~N~l~~-~~--~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 487 --QISWGVFDTLHRLQLLNMSHNNLLF-LD--SSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp --EECTTTTTTCTTCCEEECCSSCCSC-EE--GGGTTTCTTCCEEECTTSC
T ss_pred --ccChhhhcccccCCEEECCCCcCCC-cC--HHHccCCCcCCEEECCCCc
Confidence 1222334566777777776553222 11 3445667778877776544
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.83 E-value=2.8e-09 Score=116.63 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=55.6
Q ss_pred CceeeEEEecCCCCce---eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhc
Q 013278 261 SNLESFNIFAPLLPDF---TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQR 337 (446)
Q Consensus 261 p~L~~L~~~~~~~~~~---~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~ 337 (446)
++|+.|+++++..... .+..+++|+.+++........ ....+..+++|+.|.++.+.+.. ..
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~---------~~~~~~~l~~L~~L~Ls~N~l~~------~~ 330 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI---------ADEAFYGLDNLQVLNLSYNLLGE------LY 330 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE---------CTTTTTTCSSCCEEEEESCCCSC------CC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC---------ChHHhcCCCCCCEEECCCCCCCc------cC
Confidence 5677777776654322 345667777777754321111 12345667777777777665421 12
Q ss_pred ccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 338 SYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 338 ~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
+..+..+++|+.|++..+.... .. ...+..+++|+.|++....
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAI-IQ--DQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCC-CC--SSCSCSCCCCCEEEEETCC
T ss_pred HHHhcCCCCCCEEECCCCCCCc-cC--hhhhcCCCCCCEEECCCCC
Confidence 2234456666666666543211 11 1224556667766665543
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.83 E-value=5.8e-10 Score=105.84 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=31.8
Q ss_pred CCceEEEeccccccccccccC-C--CcccCCCccEEEeeceEecC------ccccccccccchh
Q 013278 123 ESLVSLKLDFGNREHQGVLNL-P--TCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDE 177 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~-p--~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~ 177 (446)
++|++|+|+++ .+.. + ....+++|++|+|+++.+.+ ..+++|++|++++
T Consensus 32 ~~l~~L~l~~n------~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 32 AASQRIFLHGN------RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp TTCSEEECTTS------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCceEEEeeCC------cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 57888888888 5543 2 24578888899888876654 1344455555544
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=112.64 Aligned_cols=236 Identities=14% Similarity=0.111 Sum_probs=130.3
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccCCCcccCCCccEEEeeceEecC----ccccccccccchh
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHVESLD----ISTTSLKYLTVDE 177 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~p~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~~ 177 (446)
++++++.. ...+|..+..+ +|++|++.++ .+..-....+++|++|++.++.... ..+++|++|++++
T Consensus 284 L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n------~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~ 356 (570)
T 2z63_A 284 VSSFSLVSVTIERVKDFSYNF-GWQHLELVNC------KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356 (570)
T ss_dssp CSEEEEESCEECSCCBCCSCC-CCSEEEEESC------BCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCS
T ss_pred ccEEEecCccchhhhhhhccC-CccEEeeccC------cccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcC
Confidence 56666654 34566666666 7777777777 4443112467777777777766543 3577777777765
Q ss_pred hcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceE
Q 013278 178 FLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKL 256 (446)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~ 256 (446)
..+... ...+..+..+++|+.|++.+|...+...- +. .++|+.|.+.+|..... .....
T Consensus 357 ----------------n~l~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~ 416 (570)
T 2z63_A 357 ----------------NGLSFK-GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM--SEFSV 416 (570)
T ss_dssp ----------------SCCBEE-EEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC--TTSCT
T ss_pred ----------------CccCcc-ccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc--cchhh
Confidence 222110 00011345677777777777764332222 32 36777777777765320 01111
Q ss_pred EEecCceeeEEEecCCCCc---eeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHH
Q 013278 257 KIACSNLESFNIFAPLLPD---FTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAI 333 (446)
Q Consensus 257 ~i~ap~L~~L~~~~~~~~~---~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~ 333 (446)
....++|++|+++++.... ..+..+++|+.+++......+ ..+...+..+++|+.|.++.+.+.
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~p~~~~~l~~L~~L~l~~n~l~----- 483 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--------NFLPDIFTELRNLTFLDLSQCQLE----- 483 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG--------GEECSCCTTCTTCCEEECTTSCCC-----
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc--------ccchhhhhcccCCCEEECCCCccc-----
Confidence 2245677777777765422 134566777777764331100 001345566777777777765442
Q ss_pred hhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 334 LEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 334 ~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
...+..+..+++|++|++..+.... .. ...+..+|+|+.|++....
T Consensus 484 -~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 484 -QLSPTAFNSLSSLQVLNMASNQLKS-VP--DGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp -EECTTTTTTCTTCCEEECCSSCCSC-CC--TTTTTTCTTCCEEECCSSC
T ss_pred -cCChhhhhcccCCCEEeCCCCcCCC-CC--HHHhhcccCCcEEEecCCc
Confidence 1122334566777777776543221 11 2345667777777776554
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.82 E-value=2.2e-10 Score=109.94 Aligned_cols=16 Identities=19% Similarity=-0.027 Sum_probs=7.8
Q ss_pred cccCcccccccccccc
Q 013278 207 IDSSPLLENLKMDSCC 222 (446)
Q Consensus 207 l~~cp~Le~L~L~~c~ 222 (446)
+..+++|+.|++.+|.
T Consensus 122 ~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 122 FLSLRNLIYLDISHTH 137 (306)
T ss_dssp TTTCTTCCEEECTTSC
T ss_pred hhhccCCCEEECCCCc
Confidence 3444555555555443
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.80 E-value=2.9e-09 Score=109.76 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=36.2
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC---C-CcccCCCccEEEeeceEecCc---ccccc--cc
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL---P-TCVGFSRLKSLDLQHVESLDI---STTSL--KY 172 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~---p-~~~~~~~L~~L~L~~~~~~~~---~~~~L--~~ 172 (446)
+++|++.. ...+|.. .+++|++|+|+++ .+.. | ....+++|++|+|+++.+.+. .+++| +.
T Consensus 71 L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N------~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 71 LEYLDLSHNKLVKISCH--PTVNLKHLDLSFN------AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142 (520)
T ss_dssp CCEEECCSSCCCEEECC--CCCCCSEEECCSS------CCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEE
T ss_pred CCEEecCCCceeecCcc--ccCCccEEeccCC------ccccccchhhhccCCcceEEEecCcccchhhccccccceeeE
Confidence 55666654 2344544 5566666666666 3332 2 234566777777776665542 34444 55
Q ss_pred ccchh
Q 013278 173 LTVDE 177 (446)
Q Consensus 173 L~l~~ 177 (446)
|++++
T Consensus 143 L~l~~ 147 (520)
T 2z7x_B 143 VLLVL 147 (520)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 55554
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.80 E-value=3.3e-10 Score=110.10 Aligned_cols=230 Identities=12% Similarity=0.069 Sum_probs=142.2
Q ss_pred hceeeeEc---ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC------ccccccccc
Q 013278 104 FQNGSVNE---PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD------ISTTSLKYL 173 (446)
Q Consensus 104 l~~L~l~~---~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L 173 (446)
+++|++.. ....|..+..+++|++|+|+++ .+.. |.. .+++|++|+++++.+.. ..+++|++|
T Consensus 80 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n------~l~~l~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKN------HLVEIPPN-LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp CCEEECCSSCCCEECGGGSTTCTTCCEEECCSS------CCCSCCSS-CCTTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred CcEEECCCCccCccCHhHhhCcCCCCEEECCCC------cCCccCcc-ccccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence 67887765 2333556677899999999998 5554 322 23899999999987765 258889999
Q ss_pred cchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCC
Q 013278 174 TVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDN 253 (446)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~ 253 (446)
++++ ..+... +..+..+..+ +|+.|++.+|...+... . ..++|+.|.+.+|..... .
T Consensus 153 ~l~~----------------n~l~~~-~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~-~~~~L~~L~l~~n~i~~~---~ 209 (332)
T 2ft3_A 153 EMGG----------------NPLENS-GFEPGAFDGL-KLNYLRISEAKLTGIPK-D-LPETLNELHLDHNKIQAI---E 209 (332)
T ss_dssp ECCS----------------CCCBGG-GSCTTSSCSC-CCSCCBCCSSBCSSCCS-S-SCSSCSCCBCCSSCCCCC---C
T ss_pred ECCC----------------CccccC-CCCcccccCC-ccCEEECcCCCCCccCc-c-ccCCCCEEECCCCcCCcc---C
Confidence 9887 332110 0111134445 89999999998654221 1 127899999999876541 1
Q ss_pred ceEEEecCceeeEEEecCCCCce---eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHH
Q 013278 254 YKLKIACSNLESFNIFAPLLPDF---TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFL 330 (446)
Q Consensus 254 ~~~~i~ap~L~~L~~~~~~~~~~---~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~ 330 (446)
.......++|++|+++++....+ .+..+++|+.+++....-.. +...+..+++++.|.++.+.+..+
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR----------VPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB----------CCTTGGGCTTCCEEECCSSCCCBC
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee----------cChhhhcCccCCEEECCCCCCCcc
Confidence 11223468999999998866443 35677888888776432111 123356788888888887655321
Q ss_pred HHHhhhcccCCC------ccCccceEEEEeecCc-ccHHhHHHHhhcCCCCcEEEEEe
Q 013278 331 NAILEQRSYFSA------SFNNLKSLILCVTTAE-WTVPLIIRLLNHSPNLEVLTIYF 381 (446)
Q Consensus 331 ~~~~~~~~~~~p------~f~~L~~L~l~~~~~~-~~~l~l~~lL~~~P~Le~L~l~~ 381 (446)
....+. .+.+|+.|++..+... +... ...+.++++|+.+.+..
T Consensus 280 ------~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~--~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 280 ------GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ--PATFRCVTDRLAIQFGN 329 (332)
T ss_dssp ------CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC--GGGGTTBCCSTTEEC--
T ss_pred ------ChhHccccccccccccccceEeecCcccccccC--cccccccchhhhhhccc
Confidence 111111 2556777777665432 2222 44566777888777654
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.79 E-value=3.2e-09 Score=107.97 Aligned_cols=76 Identities=13% Similarity=0.016 Sum_probs=37.6
Q ss_pred cccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHccc
Q 013278 234 NSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNG 313 (446)
Q Consensus 234 ~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 313 (446)
++|+.|++.+|...+ .. ....++|+.|.++++....+.+..+++|+.+++....-.. + . +..
T Consensus 170 ~~L~~L~ls~n~l~~----l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~------i----p--~~~ 231 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE----LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE------I----D--VTP 231 (457)
T ss_dssp TTCCEEECCSSCCCC----CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC------C----C--CTT
T ss_pred CcCCEEECCCCccce----ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc------c----C--ccc
Confidence 455555555554432 11 1234556666666555544455556666665554321110 0 1 455
Q ss_pred CCCccEEEEechhH
Q 013278 314 LRDVKVLKLSCTLY 327 (446)
Q Consensus 314 l~~l~~L~l~~~~~ 327 (446)
+++++.|.++.+.+
T Consensus 232 l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 232 LTQLTYFDCSVNPL 245 (457)
T ss_dssp CTTCSEEECCSSCC
T ss_pred cCCCCEEEeeCCcC
Confidence 66666666665543
No 46
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.78 E-value=8.8e-10 Score=116.84 Aligned_cols=62 Identities=15% Similarity=0.014 Sum_probs=30.4
Q ss_pred cCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeec----Cc-ccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 313 GLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTT----AE-WTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 313 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~----~~-~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
.+++|+.|.++.+.+.. .+..+..+++|+.|++..+. +. .... +.-+..+++|+.|++....
T Consensus 511 ~l~~L~~L~Ls~N~l~~-------ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-------FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW--PEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp TCTTCCEEECCSSCCSS-------CCCGGGGCSSCCEEECCSCBCTTCCBCCCCC--CTTGGGCSSCCEEECCSSC
T ss_pred cCCCcCEEECCCCCCCC-------cChhhhcCCCCCEEECCCCcccccCcccccC--hHHHhcCCCCCEEECCCCc
Confidence 56666666666654421 11223355666666664321 00 0111 3344556677777665444
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.5e-09 Score=118.40 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=23.2
Q ss_pred CceEEEeccccccccccccC-CC---cccCCCccEEEeeceEecC----ccccccccccchh
Q 013278 124 SLVSLKLDFGNREHQGVLNL-PT---CVGFSRLKSLDLQHVESLD----ISTTSLKYLTVDE 177 (446)
Q Consensus 124 ~L~~L~L~~~~~~~~~~l~~-p~---~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~~ 177 (446)
+|++|+|+++ .+.. |. ...+++|++|+|+++.+.. +.+++|+.|++++
T Consensus 549 ~L~~L~Ls~N------~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 549 KIQIFYMGYN------NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp TCCEEECCSS------CCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCS
T ss_pred CccEEEeeCC------cCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcC
Confidence 5555555555 3322 32 2345555555555554432 1344555555544
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.78 E-value=5.2e-09 Score=114.51 Aligned_cols=114 Identities=13% Similarity=0.180 Sum_probs=67.1
Q ss_pred hceeeeEc---ccccCCCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccc
Q 013278 104 FQNGSVNE---PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLK 171 (446)
Q Consensus 104 l~~L~l~~---~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~ 171 (446)
+++|++.. ....|..+..+++|+.|+|+++ .+.. | ....+++|++|+|+++.+.+ .++++|+
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN------KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESC------CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCC------cCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 55666644 2233445556778888888877 4433 2 34467788888888877654 2577777
Q ss_pred cccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeec
Q 013278 172 YLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEF 246 (446)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~ 246 (446)
+|++++ ..+.. ..+..+..+++|+.|+|.+|...+... .++|+.|.+.+|..
T Consensus 342 ~L~L~~----------------N~i~~---~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 342 YIDLQK----------------NHIAI---IQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKL 393 (844)
T ss_dssp EEECCS----------------CCCCC---CCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCC
T ss_pred EEECCC----------------CCCCc---cChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCc
Confidence 777776 32222 111135667778888877776543221 34555555555543
No 49
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.78 E-value=1.9e-10 Score=114.19 Aligned_cols=169 Identities=15% Similarity=0.062 Sum_probs=81.1
Q ss_pred ccccCcccccccccccccCCcceEEEe-----c---------cccceEEEeeeecCCCCCCCc---eEEEecCceeeEEE
Q 013278 206 EIDSSPLLENLKMDSCCFPDLKILDIS-----S---------NSLKSLTLERIEFGGDELDNY---KLKIACSNLESFNI 268 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~~~l~i~-----~---------~~Lr~L~l~~~~~~~~~~~~~---~~~i~ap~L~~L~~ 268 (446)
.+..|++|+.|+|.+|.+.......+. . ++|++|.+.+|...+ .+.. ......++|++|.+
T Consensus 117 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~l~~~~~L~~L~L 194 (386)
T 2ca6_A 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN--GSMKEWAKTFQSHRLLHTVKM 194 (386)
T ss_dssp HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG--GGHHHHHHHHHHCTTCCEEEC
T ss_pred HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc--HHHHHHHHHHHhCCCcCEEEC
Confidence 455667777777777653211111111 1 567777777666531 1111 11123556777777
Q ss_pred ecCCCCce--------eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccC
Q 013278 269 FAPLLPDF--------TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYF 340 (446)
Q Consensus 269 ~~~~~~~~--------~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~ 340 (446)
+++..... .+..+++|+.+++.... .... . ...+...+..+++|+.|.++.+.+....... .+..
T Consensus 195 ~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~---l~~~-g-~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~--l~~~ 267 (386)
T 2ca6_A 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT---FTHL-G-SSALAIALKSWPNLRELGLNDCLLSARGAAA--VVDA 267 (386)
T ss_dssp CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC---CHHH-H-HHHHHHHGGGCTTCCEEECTTCCCCHHHHHH--HHHH
T ss_pred cCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC---CCcH-H-HHHHHHHHccCCCcCEEECCCCCCchhhHHH--HHHH
Confidence 76654311 34456667766664331 1000 0 1223455666777777777665442211000 0011
Q ss_pred C--CccCccceEEEEeecCcc-cHHhHHHHh-hcCCCCcEEEEEecC
Q 013278 341 S--ASFNNLKSLILCVTTAEW-TVPLIIRLL-NHSPNLEVLTIYFDS 383 (446)
Q Consensus 341 ~--p~f~~L~~L~l~~~~~~~-~~l~l~~lL-~~~P~Le~L~l~~~~ 383 (446)
+ ..+++|++|++..+.... ....++..+ .++|+|+.|++..+.
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 2 225667777776543322 111224444 456777777765544
No 50
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.78 E-value=3.2e-09 Score=73.76 Aligned_cols=39 Identities=28% Similarity=0.520 Sum_probs=33.5
Q ss_pred CCCCCCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhhh
Q 013278 26 DGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLW 64 (446)
Q Consensus 26 ~~d~is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~lw 64 (446)
..+.++.||+||+.+||++||.+|+++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999864
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.77 E-value=2.2e-09 Score=113.02 Aligned_cols=234 Identities=16% Similarity=0.144 Sum_probs=115.7
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC--ccccccccccchhh
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD--ISTTSLKYLTVDEF 178 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~--~~~~~L~~L~l~~~ 178 (446)
++.+++.. ...+|..+. ++|++|+|+++ .+.. |. .+++|++|+|+++.+.. ..+++|++|++++
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N------~l~~lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~- 110 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDN------NLTSLPA--LPPELRTLEVSGNQLTSLPVLPPGLLELSIFS- 110 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSC------CCSCCCC--CCTTCCEEEECSCCCSCCCCCCTTCCEEEECS-
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCC------CCCCCCC--cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcC-
Confidence 45566654 345565544 67788888777 4443 33 56777778777776654 2566777777766
Q ss_pred cccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCC------
Q 013278 179 LLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELD------ 252 (446)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~------ 252 (446)
..+.. +-...++|+.|++.+|....... ..++|++|++.+|...+....
T Consensus 111 ---------------N~l~~-------l~~~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~~~~~L~~ 165 (622)
T 3g06_A 111 ---------------NPLTH-------LPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCK 165 (622)
T ss_dssp ---------------CCCCC-------CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred ---------------CcCCC-------CCCCCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCcCCccCCCCE
Confidence 33322 22234445555555544322111 124455555554443220000
Q ss_pred -------CceEEEecCceeeEEEecCCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEech
Q 013278 253 -------NYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCT 325 (446)
Q Consensus 253 -------~~~~~i~ap~L~~L~~~~~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 325 (446)
+..+....++|+.|+++++....+. ...++|+.+.+..... ..+...+++++.|.++.+
T Consensus 166 L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~-~~~~~L~~L~L~~N~l-------------~~l~~~~~~L~~L~Ls~N 231 (622)
T 3g06_A 166 LWAYNNQLTSLPMLPSGLQELSVSDNQLASLP-TLPSELYKLWAYNNRL-------------TSLPALPSGLKELIVSGN 231 (622)
T ss_dssp EECCSSCCSCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCC-------------SSCCCCCTTCCEEECCSS
T ss_pred EECCCCCCCCCcccCCCCcEEECCCCCCCCCC-CccchhhEEECcCCcc-------------cccCCCCCCCCEEEccCC
Confidence 0000022355666666655443211 1234555555432210 112223466777777765
Q ss_pred hHHHHHHHhhhcccCCC-ccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecCCCCCCCCCCCCCccccccccc
Q 013278 326 LYQFLNAILEQRSYFSA-SFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHL 404 (446)
Q Consensus 326 ~~~~~~~~~~~~~~~~p-~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~~~~~~~w~~~~~~~~~~~c~~ 404 (446)
.+. .+| .+++|+.|++..+... .+ +. .+++|+.|++..+. .. ..| .. -..+
T Consensus 232 ~L~-----------~lp~~l~~L~~L~Ls~N~L~-~l---p~---~~~~L~~L~Ls~N~---L~--~lp---~~--l~~l 283 (622)
T 3g06_A 232 RLT-----------SLPVLPSELKELMVSGNRLT-SL---PM---LPSGLLSLSVYRNQ---LT--RLP---ES--LIHL 283 (622)
T ss_dssp CCS-----------CCCCCCTTCCEEECCSSCCS-CC---CC---CCTTCCEEECCSSC---CC--SCC---GG--GGGS
T ss_pred ccC-----------cCCCCCCcCcEEECCCCCCC-cC---Cc---ccccCcEEeCCCCC---CC--cCC---HH--Hhhc
Confidence 442 133 5567777777654322 11 11 56778887776544 11 111 11 1234
Q ss_pred cceeEEecCCC
Q 013278 405 KTVELIDFSGN 415 (446)
Q Consensus 405 ~~L~~v~f~g~ 415 (446)
++|+.++..+.
T Consensus 284 ~~L~~L~L~~N 294 (622)
T 3g06_A 284 SSETTVNLEGN 294 (622)
T ss_dssp CTTCEEECCSC
T ss_pred cccCEEEecCC
Confidence 68888866554
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.77 E-value=1.1e-09 Score=105.02 Aligned_cols=208 Identities=15% Similarity=0.121 Sum_probs=122.7
Q ss_pred ccCCCccCCCCceEEEeccccccccccccC-CC--cccCCCccEEEeeceEecCccccccccccchhhcccCcccCccch
Q 013278 114 KLPRSLVTCESLVSLKLDFGNREHQGVLNL-PT--CVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCK 190 (446)
Q Consensus 114 ~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~--~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 190 (446)
.+|..+. ++|++|+|+++ .+.. |. ...+++|++|+|+++.+...
T Consensus 21 ~ip~~~~--~~l~~L~L~~n------~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------------- 67 (306)
T 2z66_A 21 SVPTGIP--SSATRLELESN------KLQSLPHGVFDKLTQLTKLSLSSNGLSFK------------------------- 67 (306)
T ss_dssp SCCSCCC--TTCCEEECCSS------CCCCCCTTTTTTCTTCSEEECCSSCCCEE-------------------------
T ss_pred cCCCCCC--CCCCEEECCCC------ccCccCHhHhhccccCCEEECCCCccCcc-------------------------
Confidence 4454332 57889999988 5544 32 35788999999988876540
Q ss_pred hhhhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEec
Q 013278 191 VICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFA 270 (446)
Q Consensus 191 ~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~ 270 (446)
..... .+..+++|++|+|.+|.......--...++|++|.+.+|...... ........++|++|.+++
T Consensus 68 ---~~~~~-------~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 68 ---GCCSQ-------SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp ---EEEEH-------HHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESST--TTTTTTTCTTCCEEECTT
T ss_pred ---cCccc-------ccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccc--cchhhhhccCCCEEECCC
Confidence 00011 234567778888777764322111112367778877777653310 001122357788888877
Q ss_pred CCCCce---eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCcc
Q 013278 271 PLLPDF---TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNL 347 (446)
Q Consensus 271 ~~~~~~---~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L 347 (446)
+..... .+..+++|+.+++......+ ......+..+++++.|.++.+.+. ...+..+..+++|
T Consensus 136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L 201 (306)
T 2z66_A 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQE--------NFLPDIFTELRNLTFLDLSQCQLE------QLSPTAFNSLSSL 201 (306)
T ss_dssp SCCEECSTTTTTTCTTCCEEECTTCEEGG--------GEECSCCTTCTTCCEEECTTSCCC------EECTTTTTTCTTC
T ss_pred CcCCccchhhcccCcCCCEEECCCCcccc--------ccchhHHhhCcCCCEEECCCCCcC------CcCHHHhcCCCCC
Confidence 654221 24567788888774331110 001345677889999999876542 1223345677889
Q ss_pred ceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 348 KSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 348 ~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
++|++..+.... .. ...+..+++|+.|++....
T Consensus 202 ~~L~L~~N~l~~-~~--~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 202 QVLNMSHNNFFS-LD--TFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp CEEECTTSCCSB-CC--SGGGTTCTTCCEEECTTSC
T ss_pred CEEECCCCccCc-cC--hhhccCcccCCEeECCCCC
Confidence 999987654321 11 1235778999999997655
No 53
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.77 E-value=3.6e-09 Score=101.77 Aligned_cols=77 Identities=19% Similarity=0.200 Sum_probs=38.4
Q ss_pred cccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCcee-ecCCCCc
Q 013278 207 IDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFT-LESLNSL 284 (446)
Q Consensus 207 l~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~-l~~~p~L 284 (446)
+..+++|+.|++.+|...+... +. .++|+.|.+.+|...+ ... ....++|+.|.++++....+. +..+++|
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~----~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L 175 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN----ISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKL 175 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCC----CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred hcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCc----Ccc-ccCCCCccEEEccCCcCCCChhhcCCCCC
Confidence 4456666666666666544322 12 2566666666665432 111 123456666666655443221 3445555
Q ss_pred eEEEEE
Q 013278 285 QNAFIF 290 (446)
Q Consensus 285 ~~l~l~ 290 (446)
+.+++.
T Consensus 176 ~~L~l~ 181 (308)
T 1h6u_A 176 TTLKAD 181 (308)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 555543
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.76 E-value=1.2e-09 Score=111.00 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=13.7
Q ss_pred CceeeEEEecCCCCceeecCCCCceEEEE
Q 013278 261 SNLESFNIFAPLLPDFTLESLNSLQNAFI 289 (446)
Q Consensus 261 p~L~~L~~~~~~~~~~~l~~~p~L~~l~l 289 (446)
++|+.|+++++....+.+..+++|+.+++
T Consensus 212 ~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l 240 (457)
T 3bz5_A 212 IQLTFLDCSSNKLTEIDVTPLTQLTYFDC 240 (457)
T ss_dssp TTCSEEECCSSCCSCCCCTTCTTCSEEEC
T ss_pred CCCCEEECcCCcccccCccccCCCCEEEe
Confidence 44555555544443333444445554444
No 55
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.76 E-value=3.2e-10 Score=110.05 Aligned_cols=171 Identities=20% Similarity=0.183 Sum_probs=108.7
Q ss_pred hceeeeEc---c-cccCCCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeece-EecCccccccccccc
Q 013278 104 FQNGSVNE---P-IKLPRSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHV-ESLDISTTSLKYLTV 175 (446)
Q Consensus 104 l~~L~l~~---~-~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~-~~~~~~~~~L~~L~l 175 (446)
+++|++.. . ..+|..+..+++|++|+|++| .+.. + ....+++|++|+|++| .+.+
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~------~l~~~~~~~l~~~~~L~~L~L~~~~~l~~----------- 157 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL------RLSDPIVNTLAKNSNLVRLNLSGCSGFSE----------- 157 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC------BCCHHHHHHHTTCTTCSEEECTTCBSCCH-----------
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc------ccCHHHHHHHhcCCCCCEEECCCCCCCCH-----------
Confidence 78888865 2 226666778999999999999 5543 2 2346899999999999 4554
Q ss_pred hhhcccCcccCccchhhhhhHHHhhhccccccccCccccccccccc-ccCCc--ceEEEecc-ccceEEEeeeec-CCCC
Q 013278 176 DEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSC-CFPDL--KILDISSN-SLKSLTLERIEF-GGDE 250 (446)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c-~~~~~--~~l~i~~~-~Lr~L~l~~~~~-~~~~ 250 (446)
..+.. ++..|++|++|++.+| ...+. ....-..+ +|++|.+.+|.. .+ +
T Consensus 158 ------------------~~l~~-------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~-~ 211 (336)
T 2ast_B 158 ------------------FALQT-------LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ-K 211 (336)
T ss_dssp ------------------HHHHH-------HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC-H
T ss_pred ------------------HHHHH-------HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC-H
Confidence 45555 6677788888888877 54321 11111236 788888887741 11 0
Q ss_pred CCCceEEEecCceeeEEEecCC-CCc---eeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEech
Q 013278 251 LDNYKLKIACSNLESFNIFAPL-LPD---FTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCT 325 (446)
Q Consensus 251 ~~~~~~~i~ap~L~~L~~~~~~-~~~---~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 325 (446)
..........|+|++|+++++. ... ..+..+++|+.+++..+. .. .......+..+++|+.|.++++
T Consensus 212 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~------~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DI------IPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TC------CGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CC------CHHHHHHHhcCCCCCEEeccCc
Confidence 1122223356788888888776 321 234567888888875442 11 0111234678999999999876
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.75 E-value=3.9e-10 Score=108.79 Aligned_cols=68 Identities=16% Similarity=0.090 Sum_probs=50.9
Q ss_pred hceeeeE-c---ccccCCCccCCCCceEEEeccccccccccccC--CC-cccCCCccEEEeeceEecC------cccccc
Q 013278 104 FQNGSVN-E---PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL--PT-CVGFSRLKSLDLQHVESLD------ISTTSL 170 (446)
Q Consensus 104 l~~L~l~-~---~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p~-~~~~~~L~~L~L~~~~~~~------~~~~~L 170 (446)
++.|++. . ...+|..+..+++|++|+|+++ .+.. |. ...+++|++|+|+++.+.+ ..+++|
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n------~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT------NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE------CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCC------eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 7899997 3 4467888888999999999999 5542 43 5579999999999999875 134445
Q ss_pred ccccchh
Q 013278 171 KYLTVDE 177 (446)
Q Consensus 171 ~~L~l~~ 177 (446)
++|++++
T Consensus 152 ~~L~L~~ 158 (313)
T 1ogq_A 152 VGITFDG 158 (313)
T ss_dssp CEEECCS
T ss_pred CeEECcC
Confidence 5555544
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.72 E-value=5.5e-09 Score=110.05 Aligned_cols=223 Identities=14% Similarity=0.035 Sum_probs=117.9
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC--ccccccccccchhh
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD--ISTTSLKYLTVDEF 178 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~--~~~~~L~~L~l~~~ 178 (446)
++.|++.. ...+|. .+++|++|+|++| .+.. |. .+++|++|+|+++.+.+ ..+++|++|++++.
T Consensus 63 L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N------~l~~lp~--~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N 131 (622)
T 3g06_A 63 ITTLVIPDNNLTSLPA---LPPELRTLEVSGN------QLTSLPV--LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN 131 (622)
T ss_dssp CSEEEECSCCCSCCCC---CCTTCCEEEECSC------CCSCCCC--CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSS
T ss_pred CcEEEecCCCCCCCCC---cCCCCCEEEcCCC------cCCcCCC--CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCC
Confidence 56666655 334554 3567777777777 4443 32 56777777777766544 24555666666551
Q ss_pred cc-cCcccCccchhhh---hhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCc
Q 013278 179 LL-SEPKGLRSCKVIC---ESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNY 254 (446)
Q Consensus 179 ~~-~~~~~~~~~~~~~---~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~ 254 (446)
.+ +.|.++.....++ ..+.. +-...+.|+.|.+.+|...+.. -..++|+.|++.+|...+ +.
T Consensus 132 ~l~~lp~~l~~L~~L~Ls~N~l~~-------l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~----l~ 197 (622)
T 3g06_A 132 QLTSLPVLPPGLQELSVSDNQLAS-------LPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS----LP 197 (622)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCSC-------CCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC----CC
T ss_pred CCCcCCCCCCCCCEEECcCCcCCC-------cCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC----CC
Confidence 11 0111000000000 11111 1122344555555554433221 113677778877776543 11
Q ss_pred eEEEecCceeeEEEecCCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHh
Q 013278 255 KLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAIL 334 (446)
Q Consensus 255 ~~~i~ap~L~~L~~~~~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~ 334 (446)
...++|+.|.+.++....+. ...++|+.+++..+.. ..+...+++|+.|.++.+.+.
T Consensus 198 ---~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~L-------------~~lp~~l~~L~~L~Ls~N~L~------ 254 (622)
T 3g06_A 198 ---TLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGNRL-------------TSLPVLPSELKELMVSGNRLT------ 254 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSSCC-CCCTTCCEEECCSSCC-------------SCCCCCCTTCCEEECCSSCCS------
T ss_pred ---CccchhhEEECcCCcccccC-CCCCCCCEEEccCCcc-------------CcCCCCCCcCcEEECCCCCCC------
Confidence 12477888888877654332 2346777777653311 112245677888888776542
Q ss_pred hhcccCCC-ccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 335 EQRSYFSA-SFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 335 ~~~~~~~p-~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
.+| .+++|+.|++..+... . ++.-+..+|+|+.|+|..+.
T Consensus 255 -----~lp~~~~~L~~L~Ls~N~L~-~---lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 255 -----SLPMLPSGLLSLSVYRNQLT-R---LPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -----CCCCCCTTCCEEECCSSCCC-S---CCGGGGGSCTTCEEECCSCC
T ss_pred -----cCCcccccCcEEeCCCCCCC-c---CCHHHhhccccCEEEecCCC
Confidence 133 5667888887765332 1 13446677888888887655
No 58
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.71 E-value=4.6e-09 Score=111.26 Aligned_cols=231 Identities=11% Similarity=0.065 Sum_probs=146.6
Q ss_pred hceeeeEc--ccc------------------cCCCcc--CCCCceEEEeccccccccccccC--C-CcccCCCccEEEee
Q 013278 104 FQNGSVNE--PIK------------------LPRSLV--TCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQ 158 (446)
Q Consensus 104 l~~L~l~~--~~~------------------lp~~l~--~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~ 158 (446)
+++|++.. ... +|..+. .+++|++|+|++| .+.. | ....+++|++|+|+
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n------~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC------PNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC------TTCSSCCTTTTTCSSCCEEECT
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC------cCCccChHHHhcCCCCCEEECc
Confidence 88888876 223 899998 9999999999999 5443 4 34579999999999
Q ss_pred ceE-ecC-c------c------ccccccccchhhcccCcccCccchhhhhhHHHhhhcccc--ccccCcccccccccccc
Q 013278 159 HVE-SLD-I------S------TTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGR--EIDSSPLLENLKMDSCC 222 (446)
Q Consensus 159 ~~~-~~~-~------~------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--ll~~cp~Le~L~L~~c~ 222 (446)
++. +.+ . . +++|++|++++ ..+. .++. .+..+++|+.|++.+|.
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~----------------n~l~----~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGY----------------NNLK----TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS----------------SCCS----SCCCHHHHTTCTTCCEEECCSCC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCC----------------CcCC----ccCchhhhccCCCCCEEeCcCCc
Confidence 997 654 1 2 38899999987 4332 2333 56788999999999987
Q ss_pred cCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCc-eeeEEEecCCCCcee--ecC--CCCceEEEEEEEeccc
Q 013278 223 FPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSN-LESFNIFAPLLPDFT--LES--LNSLQNAFIFLETIGE 296 (446)
Q Consensus 223 ~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~-L~~L~~~~~~~~~~~--l~~--~p~L~~l~l~~~~~~~ 296 (446)
+.+... .+. .++|+.|.+.+|.... ........++ |++|.++++....+. +.. +++|+.+++.......
T Consensus 342 l~g~ip-~~~~l~~L~~L~L~~N~l~~----lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 342 LEGKLP-AFGSEIKLASLNLAYNQITE----IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CEEECC-CCEEEEEESEEECCSSEEEE----CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred Cccchh-hhCCCCCCCEEECCCCcccc----ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC
Confidence 653222 332 3789999999887532 1111344567 999999988654221 222 3367777775431110
Q ss_pred hhhhhHHhHHHHHHcc-------cCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHH--
Q 013278 297 YMEAKEICHRMSKILN-------GLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRL-- 367 (446)
Q Consensus 297 ~~~~~~~~~~~~~~l~-------~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~l-- 367 (446)
.....+. .+++++.|.++.+.+..+ ....+..+++|++|++..+... .+. ...
T Consensus 417 ---------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l------p~~~~~~l~~L~~L~Ls~N~l~-~i~--~~~~~ 478 (636)
T 4eco_A 417 ---------VDGKNFDPLDPTPFKGINVSSINLSNNQISKF------PKELFSTGSPLSSINLMGNMLT-EIP--KNSLK 478 (636)
T ss_dssp ---------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC------CTHHHHTTCCCSEEECCSSCCS-BCC--SSSSE
T ss_pred ---------cchhhhcccccccccCCCCCEEECcCCccCcC------CHHHHccCCCCCEEECCCCCCC-CcC--HHHhc
Confidence 0122233 566889999887655310 0001224678888888765432 111 111
Q ss_pred -----hhcCCCCcEEEEEecC
Q 013278 368 -----LNHSPNLEVLTIYFDS 383 (446)
Q Consensus 368 -----L~~~P~Le~L~l~~~~ 383 (446)
++++++|+.|++....
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSC
T ss_pred cccccccccCCccEEECcCCc
Confidence 2234489999887655
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.70 E-value=2.6e-09 Score=101.30 Aligned_cols=55 Identities=25% Similarity=0.278 Sum_probs=38.8
Q ss_pred hceeeeEc--ccccC-CCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceE-ecC
Q 013278 104 FQNGSVNE--PIKLP-RSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVE-SLD 164 (446)
Q Consensus 104 l~~L~l~~--~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~-~~~ 164 (446)
+++|++.. ...+| ..+..+++|++|+|+++ .+.. | ....+++|++|+|+++. +..
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n------~l~~~~~~~~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSN------VLARIDAAAFTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSS------CCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCC------ccceeCHhhcCCccCCCEEeCCCCCCccc
Confidence 56666654 23344 44667899999999998 5543 3 34578999999999986 544
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.70 E-value=7.4e-09 Score=99.55 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=119.2
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC----ccccccccccch
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD----ISTTSLKYLTVD 176 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~ 176 (446)
+++|++.. ...+| .+..+++|++|+|+++ .+.. +....+++|++|+|+++.+.+ ..+++|++|+++
T Consensus 43 L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n------~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN------QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp CCEEECTTSCCCCCT-TGGGCTTCCEEECCSS------CCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred cCEEEeeCCCccCch-hhhccCCCCEEEccCC------cCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 67777765 33444 4667899999999999 5554 336678999999999998776 358889999998
Q ss_pred hhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCce
Q 013278 177 EFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYK 255 (446)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~ 255 (446)
+ ..+..+ + -+..+++|+.|++.+|...+... +. .++|+.|.+.+|...+ ...
T Consensus 116 ~----------------n~l~~~----~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~----~~~ 168 (308)
T 1h6u_A 116 S----------------TQITDV----T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD----LTP 168 (308)
T ss_dssp T----------------SCCCCC----G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC----CGG
T ss_pred C----------------CCCCCc----h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC----Chh
Confidence 7 443331 1 26788999999999998766544 33 3899999999998653 222
Q ss_pred EEEecCceeeEEEecCCCCcee-ecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechh
Q 013278 256 LKIACSNLESFNIFAPLLPDFT-LESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTL 326 (446)
Q Consensus 256 ~~i~ap~L~~L~~~~~~~~~~~-l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 326 (446)
....++|+.|.++++....+. +..+++|+.+++......+. . .+..+++++.|.++.+.
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~----------~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV----------S-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBC----------G-GGTTCTTCCEEEEEEEE
T ss_pred -hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcc----------c-cccCCCCCCEEEccCCe
Confidence 335689999999998764332 45566666666543211110 1 14556666666665543
No 61
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=2.7e-09 Score=116.31 Aligned_cols=161 Identities=8% Similarity=0.037 Sum_probs=84.9
Q ss_pred cCCCccCCCCceEEEecccccccc----ccc---------cCCC-cc--cCCCccEEEeeceEecC------cccccccc
Q 013278 115 LPRSLVTCESLVSLKLDFGNREHQ----GVL---------NLPT-CV--GFSRLKSLDLQHVESLD------ISTTSLKY 172 (446)
Q Consensus 115 lp~~l~~~~~L~~L~L~~~~~~~~----~~l---------~~p~-~~--~~~~L~~L~L~~~~~~~------~~~~~L~~ 172 (446)
+|..+..+++|++|+|+++..... ..+ ..|. .. .+++|++|+|+++.+.+ .++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 777777788888888888732110 000 0232 22 67888888888876544 25778888
Q ss_pred ccchhhc-ccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceE-EEe-ccccceEEEeeeecCCC
Q 013278 173 LTVDEFL-LSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKIL-DIS-SNSLKSLTLERIEFGGD 249 (446)
Q Consensus 173 L~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l-~i~-~~~Lr~L~l~~~~~~~~ 249 (446)
|++++.. ++ +. .+-..+..+. ..+..+|+|+.|+|.+|.+...... .+. .++|+.|.+.+|....
T Consensus 520 L~Ls~N~~ls------g~-~iP~~i~~L~----~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~- 587 (876)
T 4ecn_A 520 LNIACNRGIS------AA-QLKADWTRLA----DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH- 587 (876)
T ss_dssp EECTTCTTSC------HH-HHHHHHHHHH----HCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB-
T ss_pred EECcCCCCcc------cc-cchHHHHhhh----hcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc-
Confidence 8887621 10 00 0001111100 0224456777777777764421110 121 2567777777766431
Q ss_pred CCCCceEEEecCceeeEEEecCCCCcee--ecCCCC-ceEEEEEE
Q 013278 250 ELDNYKLKIACSNLESFNIFAPLLPDFT--LESLNS-LQNAFIFL 291 (446)
Q Consensus 250 ~~~~~~~~i~ap~L~~L~~~~~~~~~~~--l~~~p~-L~~l~l~~ 291 (446)
+. .....++|+.|.++++....+. +..+++ |+.+++..
T Consensus 588 ---lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 588 ---LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp ---CC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred ---ch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence 12 2234566777777766543221 445555 66666643
No 62
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.67 E-value=5e-08 Score=101.62 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=40.3
Q ss_pred ccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 312 NGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 312 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
..+++++.|.++.+.+.. ..+..+..+++|+.|++..+... .+..++..+..+++|+.|++....
T Consensus 350 ~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD------SVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SSCCCCCEEECCSSCCCT------TTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSC
T ss_pred cCCCCceEEECCCCcccc------chhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCc
Confidence 567788888887765421 12233556778888888765322 111225567788888888886544
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.67 E-value=3.6e-08 Score=102.11 Aligned_cols=220 Identities=16% Similarity=0.129 Sum_probs=126.1
Q ss_pred CCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccccccchhhcccCcccCccchhhh
Q 013278 123 ESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEPKGLRSCKVIC 193 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 193 (446)
++|++|+|+++ .+.. | ....+++|++|+|+++.+.+ .++++|++|++++
T Consensus 26 ~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~---------------- 83 (549)
T 2z81_A 26 AAMKSLDLSFN------KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD---------------- 83 (549)
T ss_dssp TTCCEEECCSS------CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT----------------
T ss_pred CCccEEECcCC------ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC----------------
Confidence 56777777776 4332 2 23466777777777665543 2466677777765
Q ss_pred hhHHHhhhccccccccCcccccccccccccCCcceE-EEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecC
Q 013278 194 ESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKIL-DIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAP 271 (446)
Q Consensus 194 ~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l-~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~ 271 (446)
..+.. ..+..+..+++|++|++.+|...+.... .+. .++|++|++.+|...+.- ........++|++|.++++
T Consensus 84 n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 84 NHLSS---LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI--RRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp SCCCS---CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--CTTTTTTCCEEEEEEEEET
T ss_pred CccCc---cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc--CHhhhhcccccCeeeccCC
Confidence 22211 1111467889999999999876532211 122 378999999988632200 0001123578999999888
Q ss_pred CCCce---eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCC-ccCcc
Q 013278 272 LLPDF---TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSA-SFNNL 347 (446)
Q Consensus 272 ~~~~~---~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p-~f~~L 347 (446)
..... .+..+++|+.+++........ ...++..+++++.|.++.+.+... ...+.... .+.+|
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~---------~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~L 225 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFL---------LEIFADILSSVRYLELRDTNLARF----QFSPLPVDEVSSPM 225 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBSTTH---------HHHHHHSTTTBSEEEEESCBCTTC----CCCCCSSCCCCCCC
T ss_pred cccccChhhhhccccCceEecccCccccc---------chhhHhhcccccEEEccCCccccc----cccccchhhhhhcc
Confidence 66433 345667788777765422111 123446688999999988655311 00011122 46788
Q ss_pred ceEEEEeecCcc-cHHhHHHHhhcCCCCcEEEEEec
Q 013278 348 KSLILCVTTAEW-TVPLIIRLLNHSPNLEVLTIYFD 382 (446)
Q Consensus 348 ~~L~l~~~~~~~-~~l~l~~lL~~~P~Le~L~l~~~ 382 (446)
+.|++..+.... ....+...+..+++|+.|.+...
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred cceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 888887653322 22223455567777777777653
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.66 E-value=1.3e-09 Score=111.86 Aligned_cols=205 Identities=16% Similarity=0.106 Sum_probs=106.4
Q ss_pred CCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC----ccccccccccchhhcccCcccCccchhhh
Q 013278 121 TCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD----ISTTSLKYLTVDEFLLSEPKGLRSCKVIC 193 (446)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 193 (446)
.+++|++|+|+++ .+.. | ....+++|++|+|+++.+.+ ..+++|++|++++
T Consensus 32 ~~~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~---------------- 89 (487)
T 3oja_A 32 SAWNVKELDLSGN------PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN---------------- 89 (487)
T ss_dssp TGGGCCEEECCSS------CCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCS----------------
T ss_pred cCCCccEEEeeCC------cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecC----------------
Confidence 3568999999999 5554 2 34578999999999988764 2466666666665
Q ss_pred hhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCC
Q 013278 194 ESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLL 273 (446)
Q Consensus 194 ~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~ 273 (446)
..+.. + ...+.|+.|++.+|.+.+... -..++|+.|.+.+|...+ .........++|+.|+++++..
T Consensus 90 N~l~~-------l-~~~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 90 NYVQE-------L-LVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp SEEEE-------E-EECTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCS---GGGBCGGGGSSEEEEECTTSCC
T ss_pred CcCCC-------C-CCCCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCC---CCchhhcCCCCCCEEECCCCCC
Confidence 33332 1 233666666666665443211 122566666666665432 0111112345666666666654
Q ss_pred Cceee----cCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccce
Q 013278 274 PDFTL----ESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKS 349 (446)
Q Consensus 274 ~~~~l----~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~ 349 (446)
..... ..+++|+.++++....... .....+++|+.|.++.+.+.. .+..+..+++|+.
T Consensus 157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-----------~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~l~~L~~ 218 (487)
T 3oja_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDV-----------KGQVVFAKLKTLDLSSNKLAF-------MGPEFQSAAGVTW 218 (487)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEE-----------ECCCCCTTCCEEECCSSCCCE-------ECGGGGGGTTCSE
T ss_pred CCcChHHHhhhCCcccEEecCCCccccc-----------cccccCCCCCEEECCCCCCCC-------CCHhHcCCCCccE
Confidence 43221 1345566555533211100 111235566666666554321 0111334555666
Q ss_pred EEEEeecCcccHHhHHHHhhcCCCCcEEEEEec
Q 013278 350 LILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFD 382 (446)
Q Consensus 350 L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~ 382 (446)
|++..+.... ++..+..+|+|+.|++..+
T Consensus 219 L~Ls~N~l~~----lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 219 ISLRNNKLVL----IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp EECTTSCCCE----ECTTCCCCTTCCEEECTTC
T ss_pred EEecCCcCcc----cchhhccCCCCCEEEcCCC
Confidence 6665432221 1223445566666666543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.65 E-value=7.1e-09 Score=100.03 Aligned_cols=229 Identities=14% Similarity=0.117 Sum_probs=132.6
Q ss_pred CCCceEEEeccccccccccccC-C--CcccCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHHH
Q 013278 122 CESLVSLKLDFGNREHQGVLNL-P--TCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEA 198 (446)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~l~~-p--~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 198 (446)
+++|++|+|+++ .+.. + ....+++|++|+|+++.+.+. .
T Consensus 33 ~~~L~~L~L~~n------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------------~---- 74 (317)
T 3o53_A 33 AWNVKELDLSGN------PLSQISAADLAPFTKLELLNLSSNVLYET----------------------------L---- 74 (317)
T ss_dssp GGGCSEEECTTS------CCCCCCHHHHTTCTTCCEEECTTSCCEEE----------------------------E----
T ss_pred CCCCCEEECcCC------ccCcCCHHHhhCCCcCCEEECCCCcCCcc----------------------------h----
Confidence 567888888888 5554 2 234678888888888776540 0
Q ss_pred hhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCce--
Q 013278 199 LKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDF-- 276 (446)
Q Consensus 199 ~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~-- 276 (446)
-+..+++|++|+|.+|...+. . ..++|+.|.+.+|.... ......++|++|.++++....+
T Consensus 75 -------~~~~l~~L~~L~Ls~n~l~~l---~-~~~~L~~L~l~~n~l~~------~~~~~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 75 -------DLESLSTLRTLDLNNNYVQEL---L-VGPSIETLHAANNNISR------VSCSRGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp -------EETTCTTCCEEECCSSEEEEE---E-ECTTCCEEECCSSCCSE------EEECCCSSCEEEECCSSCCCSGGG
T ss_pred -------hhhhcCCCCEEECcCCccccc---c-CCCCcCEEECCCCccCC------cCccccCCCCEEECCCCCCCCccc
Confidence 145667778888877764321 1 23778888877776532 1122357788888877765433
Q ss_pred -eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEee
Q 013278 277 -TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVT 355 (446)
Q Consensus 277 -~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~ 355 (446)
.+..+++|+.+++........ ....+...+++++.|.++.+.+.. . .....+++|++|++..+
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~~l~~L~~L~L~~N~l~~------~--~~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHLNLQYNFIYD------V--KGQVVFAKLKTLDLSSN 201 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEEECTTSCCCE------E--ECCCCCTTCCEEECCSS
T ss_pred hhhhccCCCCEEECCCCCCCcc--------cHHHHhhccCcCCEEECCCCcCcc------c--ccccccccCCEEECCCC
Confidence 345667777777653311111 013344578889999998776531 1 11225788999998865
Q ss_pred cCcccHHhHHHHhhcCCCCcEEEEEecCCCCCCCCCCCCCccccccccccceeEEecCCCHhHHHHHHHHHhcCccccce
Q 013278 356 TAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKL 435 (446)
Q Consensus 356 ~~~~~~l~l~~lL~~~P~Le~L~l~~~~~~~~~~w~~~~~~~~~~~c~~~~L~~v~f~g~~~e~~~~~~ll~~a~~L~~~ 435 (446)
.... + ..-+..+++|+.|++....= . .-+ .. . ..+.+|+.+.+.+..-.-......+...+.|+.+
T Consensus 202 ~l~~-l---~~~~~~l~~L~~L~L~~N~l---~--~l~---~~-~-~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 202 KLAF-M---GPEFQSAAGVTWISLRNNKL---V--LIE---KA-L-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp CCCE-E---CGGGGGGTTCSEEECTTSCC---C--EEC---TT-C-CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred cCCc-c---hhhhcccCcccEEECcCCcc---c--chh---hH-h-hcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 4332 1 12266789999999876541 1 011 00 1 1236888887666544312222333444444443
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.62 E-value=4.2e-09 Score=112.23 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=20.9
Q ss_pred CccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceE
Q 013278 118 SLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVE 161 (446)
Q Consensus 118 ~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~ 161 (446)
.+..+++|++|+++++ .+.. + ....+++|++|+|+++.
T Consensus 324 ~~~~l~~L~~L~l~~n------~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDN------DIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TTTTCTTCCEEECCSC------CBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred hcccCCCCCEEECCCC------ccCCCChhHhccccCCcEEECCCCc
Confidence 3445666777777766 3332 1 13355666666665543
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.62 E-value=1.4e-07 Score=96.95 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=84.5
Q ss_pred cccCCCccCCCCceEEEeccccccccccccC-C--CcccCCCccEEEeeceEecC------ccccccccccchhhcccCc
Q 013278 113 IKLPRSLVTCESLVSLKLDFGNREHQGVLNL-P--TCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEP 183 (446)
Q Consensus 113 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p--~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~ 183 (446)
..+|..+. ++|++|+|+++ .+.. + ....+++|++|+|+++.+.+ .++++|++|++++
T Consensus 13 ~~ip~~~~--~~L~~L~Ls~n------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------ 78 (520)
T 2z7x_B 13 IHVPKDLS--QKTTILNISQN------YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH------ 78 (520)
T ss_dssp SSCCCSCC--TTCSEEECCSS------CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS------
T ss_pred cccccccc--ccccEEECCCC------cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC------
Confidence 35676555 79999999999 6654 2 34579999999999998765 2578888888887
Q ss_pred ccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcce-EEEe-ccccceEEEeeeecCCCCCCCceEEEecC
Q 013278 184 KGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKI-LDIS-SNSLKSLTLERIEFGGDELDNYKLKIACS 261 (446)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~-l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap 261 (446)
..+.. ++.. .+++|++|+|.+|...+... -.+. .++|++|++.+|.... .. ....+
T Consensus 79 ----------N~l~~----lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~----~~~l~ 136 (520)
T 2z7x_B 79 ----------NKLVK----ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SS----VLPIA 136 (520)
T ss_dssp ----------SCCCE----EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GG----GGGGT
T ss_pred ----------Cceee----cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hh----ccccc
Confidence 44433 2222 68889999999887654211 1222 3789999998887542 11 11244
Q ss_pred ce--eeEEEecCCC
Q 013278 262 NL--ESFNIFAPLL 273 (446)
Q Consensus 262 ~L--~~L~~~~~~~ 273 (446)
+| +.|.+.++..
T Consensus 137 ~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 137 HLNISKVLLVLGET 150 (520)
T ss_dssp TSCEEEEEEEECTT
T ss_pred cceeeEEEeecccc
Confidence 55 8888887654
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.61 E-value=1.1e-08 Score=96.58 Aligned_cols=107 Identities=22% Similarity=0.259 Sum_probs=60.0
Q ss_pred cccCCCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccccccchhhcccCc
Q 013278 113 IKLPRSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEP 183 (446)
Q Consensus 113 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~ 183 (446)
..+|..+. ++|++|+|+++ .+.. + ....+++|++|+|+++.+.+ ..+++|++|++++
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~------ 85 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFN------PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG------ 85 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTC------CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT------
T ss_pred cccCCCCC--CCccEEECCCC------cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC------
Confidence 34555432 47999999988 5544 2 34578899999999887654 1355566666654
Q ss_pred ccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeec
Q 013278 184 KGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEF 246 (446)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~ 246 (446)
..+.. ..+..+..+++|+.|++.+|...+.....+. .++|+.|.+.+|..
T Consensus 86 ----------n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 136 (276)
T 2z62_A 86 ----------NPIQS---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136 (276)
T ss_dssp ----------CCCCE---ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred ----------CccCc---cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcc
Confidence 22211 0111345566666666666654433322222 25566666655544
No 69
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.61 E-value=1.6e-08 Score=105.28 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=34.6
Q ss_pred HHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcC-CCCcEEEEEecC
Q 013278 308 SKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHS-PNLEVLTIYFDS 383 (446)
Q Consensus 308 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~-P~Le~L~l~~~~ 383 (446)
...+..+++++.|.++.+.+.. ......+..+++|++|++..+...... .... ++|+.|++....
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~l~~~L~~L~L~~N~ 461 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNS-----HAYDRTCAWAESILVLNLSSNMLTGSV------FRCLPPKVKVLDLHNNR 461 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBS-----CCSSCCCCCCTTCCEEECCSSCCCGGG------GSSCCTTCSEEECCSSC
T ss_pred hhhhcCCCCCCEEECCCCcCCC-----ccChhhhcCcccCCEEECCCCCCCcch------hhhhcCcCCEEECCCCc
Confidence 3445666666777666554321 011112335567777777654332211 2223 689998887654
No 70
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.58 E-value=3.6e-09 Score=112.75 Aligned_cols=68 Identities=15% Similarity=0.009 Sum_probs=35.9
Q ss_pred HcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccH--HhHH----HHhhcCCCCcEEEEEecC
Q 013278 310 ILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTV--PLII----RLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 310 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~--l~l~----~lL~~~P~Le~L~l~~~~ 383 (446)
.+..+++++.|.++.+.+. ...+..+..+.+|+.|++..+.....+ ..++ ..+..+++|+.|++....
T Consensus 267 ~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 267 SFAWLPQLEYFFLEYNNIQ------HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp TTTTCTTCCEEECCSCCBS------EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred cccCcccccEeeCCCCccC------ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 4566777777777765432 112223456667777777532211100 0001 135678888888887644
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.57 E-value=1.1e-08 Score=96.46 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=22.6
Q ss_pred HcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEee
Q 013278 310 ILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVT 355 (446)
Q Consensus 310 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~ 355 (446)
.+..+++++.|.++.+.+.. ..+..+..+++|+.|++..+
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKS------VPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSS
T ss_pred HhcCCccCCEEECCCCcCCc------cCHHHHhCCcCCCEEEccCC
Confidence 34556666777666654421 22333556677777777654
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.57 E-value=1.4e-08 Score=95.58 Aligned_cols=133 Identities=18% Similarity=0.135 Sum_probs=60.5
Q ss_pred ccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCcee---ecCC
Q 013278 206 EIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFT---LESL 281 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~---l~~~ 281 (446)
.+..+++|++|+|.+|...+...-.+. .++|+.|.+.+|..... ........++|++|.++++....+. +..+
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL---PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee---CHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 345566666666666654322111111 25566666666554320 0011123456666666665443221 3445
Q ss_pred CCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeec
Q 013278 282 NSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTT 356 (446)
Q Consensus 282 p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~ 356 (446)
++|+.+++........ ....+..+++++.|.++.+.+.. .....+..+++|+.|++..+.
T Consensus 157 ~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRV---------PEGAFDKLTELKTLKLDNNQLKR------VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSCCSCC---------CTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSSC
T ss_pred cccceeEecCCcCcEe---------ChhHhccCCCcCEEECCCCcCCc------CCHHHhccccCCCEEEecCCC
Confidence 5555555532211110 01234556666666666554321 111123345566666666543
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.56 E-value=1.9e-08 Score=104.26 Aligned_cols=219 Identities=21% Similarity=0.175 Sum_probs=135.0
Q ss_pred CCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC------ccccccccccchhhcccCcccCccchhhhh
Q 013278 122 CESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEPKGLRSCKVICE 194 (446)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 194 (446)
|+..-..+.+++ .+.. |.. -+++|++|+|+++.+.+ .++++|++|++++ .
T Consensus 4 C~~~~~c~~~~~------~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~----------------n 60 (549)
T 2z81_A 4 CDASGVCDGRSR------SFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS----------------S 60 (549)
T ss_dssp ECTTSEEECTTS------CCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT----------------S
T ss_pred CCCCceEECCCC------cccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCC----------------C
Confidence 444444455555 4444 432 34899999999997654 3688899999987 3
Q ss_pred hHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCC-
Q 013278 195 SLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPL- 272 (446)
Q Consensus 195 ~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~- 272 (446)
.+.. ..+..+..+++|++|+|.+|...+...-.+. .++|++|++.+|...+ .+........++|++|+++++.
T Consensus 61 ~i~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 61 RINT---IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT--LGVTSLFPNLTNLQTLRIGNVET 135 (549)
T ss_dssp CCCE---ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSS
T ss_pred CcCc---cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc--cchhhhhhccCCccEEECCCCcc
Confidence 3322 1222567889999999999986554332233 3789999999987643 1112223456789999998875
Q ss_pred CCce---eecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccce
Q 013278 273 LPDF---TLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKS 349 (446)
Q Consensus 273 ~~~~---~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~ 349 (446)
...+ .+..+++|+.+++........ ....+..+++++.|.++......+... ....+++|+.
T Consensus 136 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~l~~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~ 200 (549)
T 2z81_A 136 FSEIRRIDFAGLTSLNELEIKALSLRNY---------QSQSLKSIRDIHHLTLHLSESAFLLEI------FADILSSVRY 200 (549)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEE---------CTTTTTTCSEEEEEEEECSBSTTHHHH------HHHSTTTBSE
T ss_pred ccccCHhhhhcccccCeeeccCCccccc---------ChhhhhccccCceEecccCcccccchh------hHhhcccccE
Confidence 3222 356778888888875421111 134567788888998887654322110 0224778899
Q ss_pred EEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 350 LILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 350 L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
|++..+........-..+...+++|+.|.+....
T Consensus 201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred EEccCCccccccccccchhhhhhcccceeccccc
Confidence 9988754322100001234567889999887543
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.54 E-value=1.9e-08 Score=94.79 Aligned_cols=108 Identities=13% Similarity=0.128 Sum_probs=53.3
Q ss_pred cccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCcee---ecCCC
Q 013278 207 IDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFT---LESLN 282 (446)
Q Consensus 207 l~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~---l~~~p 282 (446)
+..++.|++|+|.+|...+...-.+. .++|+.|.+.+|...+. ........++|++|.++++....+. +..++
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 181 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL---PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc---CHHHhccCccCCEEECCCCCcCccCHHHhcCCc
Confidence 45566666666666654332211111 25666666666654320 0111123456666666666543322 34566
Q ss_pred CceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechh
Q 013278 283 SLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTL 326 (446)
Q Consensus 283 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 326 (446)
+|+.+++....-... ....+..+++++.|.++.+.
T Consensus 182 ~L~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSV---------PDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TCCEEECCSSCCSCC---------CTTTTTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCcCCcc---------CHHHHhCCcCCCEEEccCCC
Confidence 666666643311111 12345667777777777643
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.53 E-value=1.6e-08 Score=97.18 Aligned_cols=163 Identities=16% Similarity=0.045 Sum_probs=97.9
Q ss_pred hceeeeEc---ccccCCCc--cCCCCceEEEeccccccccccccC--C-----CcccCCCccEEEeeceEecC------c
Q 013278 104 FQNGSVNE---PIKLPRSL--VTCESLVSLKLDFGNREHQGVLNL--P-----TCVGFSRLKSLDLQHVESLD------I 165 (446)
Q Consensus 104 l~~L~l~~---~~~lp~~l--~~~~~L~~L~L~~~~~~~~~~l~~--p-----~~~~~~~L~~L~L~~~~~~~------~ 165 (446)
+++|++.. ....|..+ ..+++|++|+|+++ .+.. + ....+++|++|+|+++.+.. .
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n------~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV------SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC------CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc------cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 78888876 34556665 66889999999998 4443 1 11358899999999988755 2
Q ss_pred cccccccccchhhcccCcccCccchhhhhhHHHhh-hccccccccCcccccccccccccCCcceEE---E-eccccceEE
Q 013278 166 STTSLKYLTVDEFLLSEPKGLRSCKVICESLEALK-LHFGREIDSSPLLENLKMDSCCFPDLKILD---I-SSNSLKSLT 240 (446)
Q Consensus 166 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~---i-~~~~Lr~L~ 240 (446)
.+++|++|++++ ..+.... ...+..+..+|+|++|+|.+|......... + ..++|++|+
T Consensus 167 ~l~~L~~L~Ls~----------------N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 167 AFPALTSLDLSD----------------NPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp CCTTCCEEECCS----------------CTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEE
T ss_pred cCCCCCEEECCC----------------CCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEE
Confidence 578888888877 3221100 000113357888999999988764332211 1 227888888
Q ss_pred EeeeecCCCCCCCceEEE--ecCceeeEEEecCCCCceeecCCCCceEEEEE
Q 013278 241 LERIEFGGDELDNYKLKI--ACSNLESFNIFAPLLPDFTLESLNSLQNAFIF 290 (446)
Q Consensus 241 l~~~~~~~~~~~~~~~~i--~ap~L~~L~~~~~~~~~~~l~~~p~L~~l~l~ 290 (446)
+++|...+. ....+.. ..++|++|+++++....+.-.-.++|+.+++.
T Consensus 231 Ls~N~l~~~--~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls 280 (310)
T 4glp_A 231 LSHNSLRAT--VNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLS 280 (310)
T ss_dssp CTTSCCCCC--CCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECC
T ss_pred CCCCCCCcc--chhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECC
Confidence 888876541 0111111 12688888887776543221122445554443
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.52 E-value=2.8e-08 Score=95.56 Aligned_cols=147 Identities=17% Similarity=0.074 Sum_probs=75.0
Q ss_pred hceeeeEc---ccccCCCc--cCCCCceEEEeccccccccccccC-CC-cccC-----CCccEEEeeceEecC------c
Q 013278 104 FQNGSVNE---PIKLPRSL--VTCESLVSLKLDFGNREHQGVLNL-PT-CVGF-----SRLKSLDLQHVESLD------I 165 (446)
Q Consensus 104 l~~L~l~~---~~~lp~~l--~~~~~L~~L~L~~~~~~~~~~l~~-p~-~~~~-----~~L~~L~L~~~~~~~------~ 165 (446)
+++|++.. ...+|..+ ..+++|++|+|+++ .+.. |. ...+ ++|++|+|+++.+.+ .
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N------~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV------SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC------BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCC------CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 66777765 33556554 45677777777777 4433 22 1223 677777777776654 1
Q ss_pred cccccccccchhhcccCcccCccchhhhhhHHHhhhcccc-ccccCcccccccccccccCCcceEEE----eccccceEE
Q 013278 166 STTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGR-EIDSSPLLENLKMDSCCFPDLKILDI----SSNSLKSLT 240 (446)
Q Consensus 166 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-ll~~cp~Le~L~L~~c~~~~~~~l~i----~~~~Lr~L~ 240 (446)
.+++|++|++++ ..+.......+. .+..+++|++|+|.+|.+.+...+.. ..++|+.|+
T Consensus 171 ~l~~L~~L~Ls~----------------N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 171 VFPALSTLDLSD----------------NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp CCSSCCEEECCS----------------CTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred cCCCCCEEECCC----------------CCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence 466666666665 221000000000 12566777777777766543221110 115677777
Q ss_pred EeeeecCCCCCCCceEEEecCceeeEEEecCCCC
Q 013278 241 LERIEFGGDELDNYKLKIACSNLESFNIFAPLLP 274 (446)
Q Consensus 241 l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~ 274 (446)
+.+|...+. .........++|++|+++++...
T Consensus 235 Ls~N~l~~~--~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 235 LSHNSLRDA--AGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CTTSCCCSS--CCCSCCCCCTTCCEEECTTSCCS
T ss_pred CCCCcCCcc--cchhhhhhcCCCCEEECCCCccC
Confidence 776665330 00111122456666666666443
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.51 E-value=3e-10 Score=115.17 Aligned_cols=251 Identities=16% Similarity=0.107 Sum_probs=110.9
Q ss_pred hceeeeEc-------ccccCCCccCCCCceEEEeccccccccccccC--C-C-cccCC----CccEEEeeceEecC----
Q 013278 104 FQNGSVNE-------PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL--P-T-CVGFS----RLKSLDLQHVESLD---- 164 (446)
Q Consensus 104 l~~L~l~~-------~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~-~~~~~----~L~~L~L~~~~~~~---- 164 (446)
++.|++.. ...+|..+..+++|++|+|+++ .+.. + . ...++ +|++|+|+++.+.+
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n------~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN------ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC------CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC------cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 66666664 1134445555677777777776 3332 1 1 11233 57777777777664
Q ss_pred ------ccccccccccchhhcccCcccCccchhhhhhHHHhhhcccc-ccccCcccccccccccccCCcceEE----E-e
Q 013278 165 ------ISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGR-EIDSSPLLENLKMDSCCFPDLKILD----I-S 232 (446)
Q Consensus 165 ------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-ll~~cp~Le~L~L~~c~~~~~~~l~----i-~ 232 (446)
..+++|++|++++. +--..+... +.+ +....++|++|+|.+|...+...-. + .
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n-----------~i~~~~~~~----l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 168 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDN-----------LLGDAGLQL----LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSS-----------BCHHHHHHH----HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred HHHHHHccCCceeEEECCCC-----------cCchHHHHH----HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh
Confidence 14566666666541 000011111 000 2223445666666666533211000 1 1
Q ss_pred ccccceEEEeeeecCCCCCCCceEE----EecCceeeEEEecCCCCce-------eecCCCCceEEEEEEEeccchhhhh
Q 013278 233 SNSLKSLTLERIEFGGDELDNYKLK----IACSNLESFNIFAPLLPDF-------TLESLNSLQNAFIFLETIGEYMEAK 301 (446)
Q Consensus 233 ~~~Lr~L~l~~~~~~~~~~~~~~~~----i~ap~L~~L~~~~~~~~~~-------~l~~~p~L~~l~l~~~~~~~~~~~~ 301 (446)
.++|++|++.+|...+ .+...+. ...++|++|+++++..... .+..+++|+.+++....-. + .
T Consensus 169 ~~~L~~L~L~~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~---~-~ 242 (461)
T 1z7x_W 169 KPDFKELTVSNNDINE--AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG---D-V 242 (461)
T ss_dssp CTTCCEEECCSSBCHH--HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH---H-H
T ss_pred CCCCCEEECcCCCcch--HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC---h-H
Confidence 2566666666665321 0000010 0134666666666644321 1234566666665433110 0 0
Q ss_pred HHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcc-cHHhHHHHhh-cCCCCcEEEE
Q 013278 302 EICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEW-TVPLIIRLLN-HSPNLEVLTI 379 (446)
Q Consensus 302 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~-~~l~l~~lL~-~~P~Le~L~l 379 (446)
.+..-...+...+++++.|.++.+.+..... ..-+..+..+++|++|++..+.... ....+...+. ..++|+.|.+
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC--GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH--HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHH--HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 0000012233346667777666553322100 0000112345667777766543211 1111233332 2357777776
Q ss_pred EecC
Q 013278 380 YFDS 383 (446)
Q Consensus 380 ~~~~ 383 (446)
....
T Consensus 321 ~~n~ 324 (461)
T 1z7x_W 321 KSCS 324 (461)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 5543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.51 E-value=1.5e-08 Score=96.67 Aligned_cols=206 Identities=17% Similarity=0.109 Sum_probs=112.2
Q ss_pred cCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC------ccccccccccchhhcccCcccCccchhh
Q 013278 120 VTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEPKGLRSCKVI 192 (446)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 192 (446)
..+++++.+++.++ .+.. |.. -.++|+.|+|+++.+.+ ..+++|++|+++.
T Consensus 7 ~~l~~l~~l~~~~~------~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~--------------- 64 (290)
T 1p9a_G 7 SKVASHLEVNCDKR------NLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--------------- 64 (290)
T ss_dssp ECSTTCCEEECTTS------CCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT---------------
T ss_pred cccCCccEEECCCC------CCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC---------------
Confidence 34567777777776 4444 321 23677777777776544 1355566666655
Q ss_pred hhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCC
Q 013278 193 CESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPL 272 (446)
Q Consensus 193 ~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 272 (446)
..+..+. ....+++|+.|+|.+|............++|+.|.+.+|...... ....-..++|++|.++++.
T Consensus 65 -n~l~~~~-----~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~---~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 65 -AELTKLQ-----VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP---LGALRGLGELQELYLKGNE 135 (290)
T ss_dssp -SCCCEEE-----CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCC---SSTTTTCTTCCEEECTTSC
T ss_pred -CccCccc-----CCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccC---HHHHcCCCCCCEEECCCCC
Confidence 3322210 125677788888888765433221112367888888877654311 1112235678888887776
Q ss_pred CCcee---ecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccce
Q 013278 273 LPDFT---LESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKS 349 (446)
Q Consensus 273 ~~~~~---l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~ 349 (446)
...+. +..+++|+.+++....-... ....+..+++++.|.++.+.+.. .+..+....+|+.
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l---------~~~~~~~l~~L~~L~L~~N~l~~-------ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTEL---------PAGLLNGLENLDTLLLQENSLYT-------IPKGFFGSHLLPF 199 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCC---------CTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCCCSE
T ss_pred CCccChhhcccccCCCEEECCCCcCCcc---------CHHHhcCcCCCCEEECCCCcCCc-------cChhhcccccCCe
Confidence 54332 34567777776643211111 12345667778888877765531 1112224456777
Q ss_pred EEEEeecC--cccHHhHHHHhhcCC
Q 013278 350 LILCVTTA--EWTVPLIIRLLNHSP 372 (446)
Q Consensus 350 L~l~~~~~--~~~~l~l~~lL~~~P 372 (446)
|.+..+.. +.+..++..+++.-+
T Consensus 200 l~L~~Np~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 200 AFLHGNPWLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp EECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred EEeCCCCccCcCccHHHHHHHHhCc
Confidence 77776542 234445566665543
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.51 E-value=1.5e-08 Score=95.28 Aligned_cols=196 Identities=16% Similarity=0.095 Sum_probs=121.3
Q ss_pred CCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHHHhhh
Q 013278 123 ESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKL 201 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (446)
.+.+.+++++. .+.. |.. -.++|++|+|+++.+.. - ...
T Consensus 16 ~~~~~l~~~~~------~l~~ip~~-~~~~l~~L~l~~n~l~~-----------------------------~-~~~--- 55 (270)
T 2o6q_A 16 NNKNSVDCSSK------KLTAIPSN-IPADTKKLDLQSNKLSS-----------------------------L-PSK--- 55 (270)
T ss_dssp TTTTEEECTTS------CCSSCCSC-CCTTCSEEECCSSCCSC-----------------------------C-CTT---
T ss_pred CCCCEEEccCC------CCCccCCC-CCCCCCEEECcCCCCCe-----------------------------e-CHH---
Confidence 35778888887 5554 332 23689999999887765 1 011
Q ss_pred ccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCcee---
Q 013278 202 HFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFT--- 277 (446)
Q Consensus 202 ~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~--- 277 (446)
.+..+++|++|+|.+|.......-.+. .++|++|.+.+|..... ........++|++|.++++....+.
T Consensus 56 ----~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 128 (270)
T 2o6q_A 56 ----AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL---PIGVFDQLVNLAELRLDRNQLKSLPPRV 128 (270)
T ss_dssp ----SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC---CTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred ----HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC---CHhHcccccCCCEEECCCCccCeeCHHH
Confidence 567889999999999875533221122 47899999999876431 1111224578999999887654332
Q ss_pred ecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecC
Q 013278 278 LESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTA 357 (446)
Q Consensus 278 l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~ 357 (446)
+..+++|+.+++........ ....+..+++|+.|.++.+.+.. ..+..+..+++|++|++..+..
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSL---------PKGVFDKLTSLKELRLYNNQLKR------VPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSSCC
T ss_pred hCcCcCCCEEECCCCcCCcc---------CHhHccCCcccceeEecCCcCcE------eChhHhccCCCcCEEECCCCcC
Confidence 45678888887754321111 02345677888888887765421 1222345667788888775532
Q ss_pred cccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 358 EWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 358 ~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
. .+. ...+..+++|+.|.+...+
T Consensus 194 ~-~~~--~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 194 K-RVP--EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp S-CCC--TTTTTTCTTCCEEECCSSC
T ss_pred C-cCC--HHHhccccCCCEEEecCCC
Confidence 2 111 2345667888888876654
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.51 E-value=4.8e-09 Score=104.01 Aligned_cols=227 Identities=16% Similarity=0.155 Sum_probs=135.3
Q ss_pred cCCCccCCCCceEEEeccccccccccccC--C-----CcccCCCccEEEeeceEecCccccccccccchhhcccCcccCc
Q 013278 115 LPRSLVTCESLVSLKLDFGNREHQGVLNL--P-----TCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLR 187 (446)
Q Consensus 115 lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-----~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 187 (446)
++..+..+++|++|+|++| .+.. + ....+++|++|+|+++.+... .+ ..|.
T Consensus 24 l~~~l~~~~~L~~L~L~~n------~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l----------~~---~~~~--- 81 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGN------TIGTEAARWLSENIASKKDLEIAEFSDIFTGRV----------KD---EIPE--- 81 (386)
T ss_dssp TSHHHHHCSCCCEEECTTS------EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSC----------GG---GSHH---
T ss_pred HHHHHhcCCCccEEECCCC------CCCHHHHHHHHHHHHhCCCccEEeCcccccCcc----------cc---chhH---
Confidence 3444455778888888888 4443 1 123578888888888754320 00 0000
Q ss_pred cchhhhhhHHHhhhccccccccCcccccccccccccCCcce--E--EE-eccccceEEEeeeecCCCCCCCceE---EEe
Q 013278 188 SCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKI--L--DI-SSNSLKSLTLERIEFGGDELDNYKL---KIA 259 (446)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~--l--~i-~~~~Lr~L~l~~~~~~~~~~~~~~~---~i~ 259 (446)
-...+.. .+..+++|++|+|.+|.+.+... + .+ ..++|++|.+.+|.+.. .+...+ ...
T Consensus 82 ----~~~~l~~-------~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~--~~~~~l~~~l~~ 148 (386)
T 2ca6_A 82 ----ALRLLLQ-------ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP--QAGAKIARALQE 148 (386)
T ss_dssp ----HHHHHHH-------HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH--HHHHHHHHHHHH
T ss_pred ----HHHHHHH-------HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH--HHHHHHHHHHHH
Confidence 0022223 56789999999999998654211 1 12 24899999999997632 000001 011
Q ss_pred c---------CceeeEEEecCCCCce-------eecCCCCceEEEEEEEeccchhhhhHHhHHHHH-HcccCCCccEEEE
Q 013278 260 C---------SNLESFNIFAPLLPDF-------TLESLNSLQNAFIFLETIGEYMEAKEICHRMSK-ILNGLRDVKVLKL 322 (446)
Q Consensus 260 a---------p~L~~L~~~~~~~~~~-------~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~-~l~~l~~l~~L~l 322 (446)
. ++|++|.++++..... .+..+++|+.+.+..+... . ..+ ..+.. .+..+++|+.|.+
T Consensus 149 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~---~-~g~-~~l~~~~l~~~~~L~~L~L 223 (386)
T 2ca6_A 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR---P-EGI-EHLLLEGLAYCQELKVLDL 223 (386)
T ss_dssp HHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC---H-HHH-HHHHHTTGGGCTTCCEEEC
T ss_pred HhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC---H-hHH-HHHHHHHhhcCCCccEEEC
Confidence 1 8999999999876421 2346788998888654211 1 011 11233 6788999999999
Q ss_pred echhHHHHHHHhhhcccCCCccCccceEEEEeecCcc-cHHhHHHHhhc--CCCCcEEEEEecC
Q 013278 323 SCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEW-TVPLIIRLLNH--SPNLEVLTIYFDS 383 (446)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~-~~l~l~~lL~~--~P~Le~L~l~~~~ 383 (446)
+.+.+..... ...+..+..+++|++|++..+.... ....++..++. +|+|+.|.+..+.
T Consensus 224 s~n~l~~~g~--~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 224 QDNTFTHLGS--SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CSSCCHHHHH--HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cCCCCCcHHH--HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 9876632100 0011235677889999998665332 22334666655 8999999997655
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.50 E-value=3.3e-10 Score=114.80 Aligned_cols=299 Identities=17% Similarity=0.116 Sum_probs=171.7
Q ss_pred hceeeeEc-------ccccCCCcc-CCCCceEEEeccccccccccccC------C-CcccCCCccEEEeeceEecCc---
Q 013278 104 FQNGSVNE-------PIKLPRSLV-TCESLVSLKLDFGNREHQGVLNL------P-TCVGFSRLKSLDLQHVESLDI--- 165 (446)
Q Consensus 104 l~~L~l~~-------~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~l~~------p-~~~~~~~L~~L~L~~~~~~~~--- 165 (446)
+++|++.. ...+...+. ..++|++|+|++| .+.. + ....+++|++|+|+++.+.+.
T Consensus 115 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC------SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS------CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred eeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC------CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 78888865 111111112 2457999999998 4443 1 123578999999999887652
Q ss_pred --------cccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcce--E----EE
Q 013278 166 --------STTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKI--L----DI 231 (446)
Q Consensus 166 --------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~--l----~i 231 (446)
..++|++|++++..++. ..+ ..+.. .+..+++|++|++.+|...+... + .-
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~----~~~----~~l~~-------~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~ 253 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTS----DNC----RDLCG-------IVASKASLRELALGSNKLGDVGMAELCPGLLH 253 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBT----THH----HHHHH-------HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCCCceEEEccCCCCcH----HHH----HHHHH-------HHHhCCCccEEeccCCcCChHHHHHHHHHHhc
Confidence 24588888887621100 000 12333 66788999999999987432111 1 01
Q ss_pred eccccceEEEeeeecCCCCCC---CceEEEecCceeeEEEecCCCCce---ee-----cCCCCceEEEEEEEeccchhhh
Q 013278 232 SSNSLKSLTLERIEFGGDELD---NYKLKIACSNLESFNIFAPLLPDF---TL-----ESLNSLQNAFIFLETIGEYMEA 300 (446)
Q Consensus 232 ~~~~Lr~L~l~~~~~~~~~~~---~~~~~i~ap~L~~L~~~~~~~~~~---~l-----~~~p~L~~l~l~~~~~~~~~~~ 300 (446)
..++|++|++.+|.... .+ ........++|++|+++++..... .+ ...++|+.+++..+.....
T Consensus 254 ~~~~L~~L~L~~n~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--- 328 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITA--KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA--- 328 (461)
T ss_dssp TTCCCCEEECTTSCCCH--HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG---
T ss_pred CCCCceEEECcCCCCCH--HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH---
Confidence 24789999999987532 00 111122368999999998865321 11 1236888888864421111
Q ss_pred hHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCC-ccCccceEEEEeecCcc-cHHhHHHHhhcCCCCcEEE
Q 013278 301 KEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSA-SFNNLKSLILCVTTAEW-TVPLIIRLLNHSPNLEVLT 378 (446)
Q Consensus 301 ~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p-~f~~L~~L~l~~~~~~~-~~l~l~~lL~~~P~Le~L~ 378 (446)
. ...+...+..+++++.|.++.+.+....... -...++ ..++|++|++..+.... ....++..+..+|+|+.|+
T Consensus 329 -~-~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~--l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 329 -C-CSHFSSVLAQNRFLLELQISNNRLEDAGVRE--LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp -G-HHHHHHHHHHCSSCCEEECCSSBCHHHHHHH--HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred -H-HHHHHHHHhhCCCccEEEccCCccccccHHH--HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 0 1234677788999999999987654321100 001122 26789999998764332 2234577888999999999
Q ss_pred EEecCCCC--CCCCCCCCCccccccccccceeEEecCCCHhHHHHHHHHHhcCccccce
Q 013278 379 IYFDSDEY--YDDWEIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKL 435 (446)
Q Consensus 379 l~~~~~~~--~~~w~~~~~~~~~~~c~~~~L~~v~f~g~~~e~~~~~~ll~~a~~L~~~ 435 (446)
+....-.. ....... .....|.+.+|+..+........+.++.+.+.-|.|+.+
T Consensus 405 l~~N~i~~~~~~~l~~~---l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 405 LSNNCLGDAGILQLVES---VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp CCSSSCCHHHHHHHHHH---HTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCCCCCHHHHHHHHHH---hccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 97665100 0000000 000123334444445555555556777777777777543
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.47 E-value=3.2e-08 Score=94.26 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=121.2
Q ss_pred ceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC----ccccccccccc
Q 013278 105 QNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD----ISTTSLKYLTV 175 (446)
Q Consensus 105 ~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l 175 (446)
+++++.. ...+|..+. ++++.|+|+++ .+.. + ....+++|++|+|+++.+.. ..+++|++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPDLP--KDTTILHLSEN------LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp CEEECTTSCCSSCCSCCC--TTCCEEECTTS------CCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred cEEECCCCCCCcCCCCCC--CCCCEEEcCCC------cCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 3444433 345565443 68999999998 5543 2 34578999999999887654 46889999999
Q ss_pred hhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCc
Q 013278 176 DEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNY 254 (446)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~ 254 (446)
++ ..+.. ++..+..+++|+.|+|.+|.+.+...-.+. .++|+.|.+.+|..... ..
T Consensus 85 s~----------------N~l~~----l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~---~~ 141 (290)
T 1p9a_G 85 SH----------------NQLQS----LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL---PP 141 (290)
T ss_dssp CS----------------SCCSS----CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC---CT
T ss_pred CC----------------CcCCc----CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc---Ch
Confidence 87 44433 333567889999999999986543322222 37899999999876531 11
Q ss_pred eEEEecCceeeEEEecCCCCcee---ecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhH
Q 013278 255 KLKIACSNLESFNIFAPLLPDFT---LESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLY 327 (446)
Q Consensus 255 ~~~i~ap~L~~L~~~~~~~~~~~---l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 327 (446)
.+....++|+.|.++++....+. +..+++|+.+++....-... ...+...++++.|.++++.+
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i----------p~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI----------PKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC----------CTTTTTTCCCSEEECCSCCB
T ss_pred hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc----------ChhhcccccCCeEEeCCCCc
Confidence 11224689999999998765443 45678999988864421111 22334566899999986543
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.44 E-value=8.6e-08 Score=91.99 Aligned_cols=158 Identities=14% Similarity=0.073 Sum_probs=103.5
Q ss_pred hceeeeEc---ccccC----CCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC---------
Q 013278 104 FQNGSVNE---PIKLP----RSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD--------- 164 (446)
Q Consensus 104 l~~L~l~~---~~~lp----~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~--------- 164 (446)
+++|++.. ....| ..+..+++|++|+|+++ .+.. + ....+++|++|+|+++.+.+
T Consensus 119 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 119 LSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA------HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC------SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred CCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC------CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 67788875 11111 12235789999999999 5544 2 34478999999999997432
Q ss_pred -ccccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe----ccccceE
Q 013278 165 -ISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS----SNSLKSL 239 (446)
Q Consensus 165 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~----~~~Lr~L 239 (446)
+.+++|++|++++ ..+..+......++..+++|++|+|.+|...+...-.+. .++|++|
T Consensus 193 ~~~l~~L~~L~Ls~----------------N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L 256 (310)
T 4glp_A 193 PHKFPAIQNLALRN----------------TGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL 256 (310)
T ss_dssp TTSSCCCCSCBCCS----------------SCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE
T ss_pred hhcCCCCCEEECCC----------------CCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEE
Confidence 3688999999987 222211111111457889999999999987654221111 2699999
Q ss_pred EEeeeecCCCCCCCceEEEecCceeeEEEecCCCCc-eeecCCCCceEEEE
Q 013278 240 TLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPD-FTLESLNSLQNAFI 289 (446)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~-~~l~~~p~L~~l~l 289 (446)
.+++|...... ..+ .++|+.|+++++.... ..+..+++|+.+++
T Consensus 257 ~Ls~N~l~~lp---~~~---~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 257 NLSFAGLEQVP---KGL---PAKLRVLDLSSNRLNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp ECCSSCCCSCC---SCC---CSCCSCEECCSCCCCSCCCTTSCCCCSCEEC
T ss_pred ECCCCCCCchh---hhh---cCCCCEEECCCCcCCCCchhhhCCCccEEEC
Confidence 99999875411 111 2899999999987754 23445566665554
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.43 E-value=9e-08 Score=91.99 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=102.9
Q ss_pred hceeeeEc--ccccCCCccCC-----CCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC---------
Q 013278 104 FQNGSVNE--PIKLPRSLVTC-----ESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD--------- 164 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~-----~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~--------- 164 (446)
+++|++.. ...+|..+... ++|++|+|+++ .+.. | ....+++|++|+|+++.+.+
T Consensus 123 L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA------HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC------SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC------CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 78888876 23335544444 88999999998 5544 2 34578999999999987432
Q ss_pred -ccccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceE-EE-eccccceEEE
Q 013278 165 -ISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKIL-DI-SSNSLKSLTL 241 (446)
Q Consensus 165 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l-~i-~~~~Lr~L~l 241 (446)
..+++|++|++++ ..+..+......++..+++|+.|+|.+|...+.... .. ..++|+.|++
T Consensus 197 ~~~l~~L~~L~L~~----------------N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 197 PLKFPTLQVLALRN----------------AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp TTSCTTCCEEECTT----------------SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred hccCCCCCEEECCC----------------CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 3678899999987 222211111111567889999999999987654321 12 2489999999
Q ss_pred eeeecCCCCCCCceEEEecCceeeEEEecCCCCce-eecCCCCceEEEE
Q 013278 242 ERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDF-TLESLNSLQNAFI 289 (446)
Q Consensus 242 ~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~-~l~~~p~L~~l~l 289 (446)
++|...... ..+. ++|++|+++++..... .+..+++|+.+++
T Consensus 261 s~N~l~~ip---~~~~---~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L 303 (312)
T 1wwl_A 261 SFTGLKQVP---KGLP---AKLSVLDLSYNRLDRNPSPDELPQVGNLSL 303 (312)
T ss_dssp TTSCCSSCC---SSCC---SEEEEEECCSSCCCSCCCTTTSCEEEEEEC
T ss_pred CCCccChhh---hhcc---CCceEEECCCCCCCCChhHhhCCCCCEEec
Confidence 999875311 1111 8999999998866432 2344455555444
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.43 E-value=1.1e-07 Score=90.54 Aligned_cols=37 Identities=11% Similarity=-0.005 Sum_probs=21.0
Q ss_pred CCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC
Q 013278 122 CESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~ 164 (446)
+++|++|+++++ .+.. +....+++|++|+|+++.+.+
T Consensus 45 l~~L~~L~l~~~------~i~~~~~~~~l~~L~~L~L~~n~l~~ 82 (291)
T 1h6t_A 45 LNSIDQIIANNS------DIKSVQGIQYLPNVTKLFLNGNKLTD 82 (291)
T ss_dssp HHTCCEEECTTS------CCCCCTTGGGCTTCCEEECCSSCCCC
T ss_pred cCcccEEEccCC------CcccChhHhcCCCCCEEEccCCccCC
Confidence 455666666666 4433 334456666666666665544
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.42 E-value=7.6e-08 Score=86.00 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=27.2
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEec
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESL 163 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~ 163 (446)
+++|++.. ...+| .+..+++|++|++++| .+.. +....+++|++|+|+++.+.
T Consensus 46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n------~~~~~~~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 46 LTYITLANINVTDLT-GIEYAHNIKDLTINNI------HATNYNPISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp CCEEEEESSCCSCCT-TGGGCTTCSEEEEESC------CCSCCGGGTTCTTCCEEEEECTTCB
T ss_pred ccEEeccCCCccChH-HHhcCCCCCEEEccCC------CCCcchhhhcCCCCCEEEeECCccC
Confidence 34444443 22334 3445566666666666 3333 23335666666666665554
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.40 E-value=1.5e-07 Score=89.53 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=45.7
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC----ccccccccccch
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD----ISTTSLKYLTVD 176 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~ 176 (446)
++.|++.. ...+| .+..+++|++|+|+++ .+.. +....+++|++|+|+++.+.+ ..+++|++|+++
T Consensus 48 L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n------~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN------KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120 (291)
T ss_dssp CCEEECTTSCCCCCT-TGGGCTTCCEEECCSS------CCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred ccEEEccCCCcccCh-hHhcCCCCCEEEccCC------ccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence 66776654 23344 3566899999999999 5554 335688999999999998766 134445555554
Q ss_pred h
Q 013278 177 E 177 (446)
Q Consensus 177 ~ 177 (446)
+
T Consensus 121 ~ 121 (291)
T 1h6t_A 121 H 121 (291)
T ss_dssp T
T ss_pred C
Confidence 4
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.37 E-value=7.9e-08 Score=97.57 Aligned_cols=207 Identities=17% Similarity=0.128 Sum_probs=129.2
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC--ccccccccccchhh
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD--ISTTSLKYLTVDEF 178 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~--~~~~~L~~L~l~~~ 178 (446)
+++|++.. ...+|.. .++|++|+++++ .+.. |....+++|++|+++++.+.+ ...++|++|++++
T Consensus 155 L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n------~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~- 224 (454)
T 1jl5_A 155 LKIIDVDNNSLKKLPDL---PPSLEFIAAGNN------QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN- 224 (454)
T ss_dssp CCEEECCSSCCSCCCCC---CTTCCEEECCSS------CCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS-
T ss_pred CCEEECCCCcCcccCCC---cccccEEECcCC------cCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcC-
Confidence 77787765 3345543 258999999998 5544 556688999999999998776 2456789999887
Q ss_pred cccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEE
Q 013278 179 LLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKI 258 (446)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i 258 (446)
..+.. ++. +..+++|+.|++.+|...+... ..++|+.|++.+|...+ ...
T Consensus 225 ---------------n~l~~----lp~-~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~----l~~--- 274 (454)
T 1jl5_A 225 ---------------NILEE----LPE-LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD----LPE--- 274 (454)
T ss_dssp ---------------SCCSS----CCC-CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC----CCC---
T ss_pred ---------------CcCCc----ccc-cCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc----cCc---
Confidence 44333 222 5678899999999887654322 23788999998887643 111
Q ss_pred ecCceeeEEEecCCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccC-CCccEEEEechhHHHHHHHhhhc
Q 013278 259 ACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGL-RDVKVLKLSCTLYQFLNAILEQR 337 (446)
Q Consensus 259 ~ap~L~~L~~~~~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~l~~~~~~~~~~~~~~~ 337 (446)
..++|++|+++++....+. ...++|+.+++....- .. +..+ ++++.|.++.+.+.
T Consensus 275 ~~~~L~~L~ls~N~l~~l~-~~~~~L~~L~l~~N~l-------------~~-i~~~~~~L~~L~Ls~N~l~--------- 330 (454)
T 1jl5_A 275 LPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEI-------------RS-LCDLPPSLEELNVSNNKLI--------- 330 (454)
T ss_dssp CCTTCCEEECCSSCCSEES-CCCTTCCEEECCSSCC-------------SE-ECCCCTTCCEEECCSSCCS---------
T ss_pred ccCcCCEEECcCCccCccc-CcCCcCCEEECcCCcC-------------Cc-ccCCcCcCCEEECCCCccc---------
Confidence 2378888888887654321 1225677776643210 11 1123 46777777765432
Q ss_pred ccCCC-ccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 338 SYFSA-SFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 338 ~~~~p-~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
.+| .+++|+.|++..+... .+ +. ..++|+.|++....
T Consensus 331 --~lp~~~~~L~~L~L~~N~l~-~l---p~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 331 --ELPALPPRLERLIASFNHLA-EV---PE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp --CCCCCCTTCCEEECCSSCCS-CC---CC---CCTTCCEEECCSSC
T ss_pred --cccccCCcCCEEECCCCccc-cc---cc---hhhhccEEECCCCC
Confidence 133 4567777777654322 11 11 35677777776544
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.33 E-value=8.6e-08 Score=85.64 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=30.6
Q ss_pred CCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC
Q 013278 121 TCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~ 164 (446)
.+++|++|+++++ .+.. |....+++|++|+++++.+..
T Consensus 42 ~l~~L~~L~l~~n------~i~~l~~l~~l~~L~~L~l~~n~~~~ 80 (197)
T 4ezg_A 42 QMNSLTYITLANI------NVTDLTGIEYAHNIKDLTINNIHATN 80 (197)
T ss_dssp HHHTCCEEEEESS------CCSCCTTGGGCTTCSEEEEESCCCSC
T ss_pred hcCCccEEeccCC------CccChHHHhcCCCCCEEEccCCCCCc
Confidence 4678999999998 6655 556689999999999996554
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.33 E-value=5.3e-08 Score=91.71 Aligned_cols=118 Identities=20% Similarity=0.132 Sum_probs=78.4
Q ss_pred hceeeeEc--ccccCC-CccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------ccccccc
Q 013278 104 FQNGSVNE--PIKLPR-SLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSLK 171 (446)
Q Consensus 104 l~~L~l~~--~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L~ 171 (446)
+++|++.. ...++. .+..+++|++|+|+++ .+.. + ....+++|++|+|+++.+.+ .++++|+
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTC------CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCC------cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 56666654 233443 5667899999999998 5543 2 34578999999999887654 2578899
Q ss_pred cccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcc-eEEEe-ccccceEEEeeeec
Q 013278 172 YLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLK-ILDIS-SNSLKSLTLERIEF 246 (446)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~-~l~i~-~~~Lr~L~l~~~~~ 246 (446)
+|++.+ ..+..+ .+..+..+++|++|++.+|...+.. .-.+. .++|+.|++.+|..
T Consensus 104 ~L~l~~----------------n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 104 KLVAVE----------------TNLASL---ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp EEECTT----------------SCCCCS---TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEECCC----------------CCcccc---CchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 998877 333221 1113678899999999998765422 11122 26788888877764
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.32 E-value=1.8e-07 Score=98.30 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=88.8
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC----ccccccccccch
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD----ISTTSLKYLTVD 176 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~ 176 (446)
++.|.+.. ...+| .+..+++|+.|+|++| .+.. +....+++|+.|+|+++.+.+ ..+++|+.|+|+
T Consensus 45 L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N------~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN------KLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 117 (605)
T ss_dssp CCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS------CCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT
T ss_pred CCEEECcCCCCCCCh-HHccCCCCCEEEeeCC------CCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEec
Confidence 45555544 22333 4566788888888888 5544 335578888888888887665 246667777776
Q ss_pred hhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceE
Q 013278 177 EFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKL 256 (446)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~ 256 (446)
. ..+..+ .-+..+++|+.|+|.+|...+...+ -..++|+.|.+.+|...+ ...
T Consensus 118 ~----------------N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~l~~l-~~l~~L~~L~Ls~N~l~~----~~~- 170 (605)
T 1m9s_A 118 H----------------NGISDI-----NGLVHLPQLESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISD----IVP- 170 (605)
T ss_dssp T----------------SCCCCC-----GGGGGCTTCSEEECCSSCCCCCGGG-GSCTTCSEEECCSSCCCC----CGG-
T ss_pred C----------------CCCCCC-----ccccCCCccCEEECCCCccCCchhh-cccCCCCEEECcCCcCCC----chh-
Confidence 6 222221 0245667777777777765543111 112667777777766543 111
Q ss_pred EEecCceeeEEEecCCCCce-eecCCCCceEEEEE
Q 013278 257 KIACSNLESFNIFAPLLPDF-TLESLNSLQNAFIF 290 (446)
Q Consensus 257 ~i~ap~L~~L~~~~~~~~~~-~l~~~p~L~~l~l~ 290 (446)
....++|+.|.++++.+..+ .+..+++|+.+.+.
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 205 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred hccCCCCCEEECcCCCCCCChHHccCCCCCEEEcc
Confidence 23456677777766654332 34455666666654
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.30 E-value=4.2e-07 Score=83.60 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=22.1
Q ss_pred CceEEEeccccccccccccC-C--CcccCCCccEEEeeceE
Q 013278 124 SLVSLKLDFGNREHQGVLNL-P--TCVGFSRLKSLDLQHVE 161 (446)
Q Consensus 124 ~L~~L~L~~~~~~~~~~l~~-p--~~~~~~~L~~L~L~~~~ 161 (446)
+|++|+|+++ .+.. | ....+++|++|+|+++.
T Consensus 32 ~l~~L~l~~n------~l~~i~~~~~~~l~~L~~L~l~~n~ 66 (239)
T 2xwt_C 32 STQTLKLIET------HLRTIPSHAFSNLPNISRIYVSIDV 66 (239)
T ss_dssp TCCEEEEESC------CCSEECTTTTTTCTTCCEEEEECCS
T ss_pred cccEEEEeCC------cceEECHHHccCCCCCcEEeCCCCC
Confidence 6888888877 4443 2 24467788888888775
No 93
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.30 E-value=3.3e-07 Score=92.95 Aligned_cols=207 Identities=17% Similarity=0.111 Sum_probs=136.7
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC----ccccccccccch
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD----ISTTSLKYLTVD 176 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~ 176 (446)
+++|++.. ...+| .+..+++|++|+++++ .+.. |. ..++|++|+++++.+.+ ..+++|++|+++
T Consensus 133 L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N------~l~~lp~--~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 133 LEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN------SLKKLPD--LPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD 203 (454)
T ss_dssp CCEEECCSSCCSSCC-CCTTCTTCCEEECCSS------CCSCCCC--CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred CCEEECcCCCCCCCc-ccCCCCCCCEEECCCC------cCcccCC--CcccccEEECcCCcCCcCccccCCCCCCEEECC
Confidence 78888876 34577 5778899999999998 5543 32 34699999999987765 367888888888
Q ss_pred hhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCce
Q 013278 177 EFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYK 255 (446)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~ 255 (446)
+ ..+.. +-...++|+.|++.+|....... +. .++|+.|++.+|...+ ...
T Consensus 204 ~----------------N~l~~-------l~~~~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~----l~~ 254 (454)
T 1jl5_A 204 N----------------NSLKK-------LPDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKT----LPD 254 (454)
T ss_dssp S----------------SCCSS-------CCCCCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSS----CCS
T ss_pred C----------------CcCCc-------CCCCcCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCc----ccc
Confidence 7 44433 22334689999999997654332 32 3789999999987643 111
Q ss_pred EEEecCceeeEEEecCCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhh
Q 013278 256 LKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILE 335 (446)
Q Consensus 256 ~~i~ap~L~~L~~~~~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~ 335 (446)
..++|++|+++++....+. ...++|+.+++....-. .+-...++++.|.++.+.+.
T Consensus 255 ---~~~~L~~L~l~~N~l~~l~-~~~~~L~~L~ls~N~l~-------------~l~~~~~~L~~L~l~~N~l~------- 310 (454)
T 1jl5_A 255 ---LPPSLEALNVRDNYLTDLP-ELPQSLTFLDVSENIFS-------------GLSELPPNLYYLNASSNEIR------- 310 (454)
T ss_dssp ---CCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCS-------------EESCCCTTCCEEECCSSCCS-------
T ss_pred ---cccccCEEECCCCcccccC-cccCcCCEEECcCCccC-------------cccCcCCcCCEEECcCCcCC-------
Confidence 2378999999988765422 23477888887543111 11112368899998876542
Q ss_pred hcccCCCcc-CccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 336 QRSYFSASF-NNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 336 ~~~~~~p~f-~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
.++.+ .+|+.|++..+.... + + ..+++|+.|++....
T Consensus 311 ----~i~~~~~~L~~L~Ls~N~l~~-l---p---~~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 311 ----SLCDLPPSLEELNVSNNKLIE-L---P---ALPPRLERLIASFNH 348 (454)
T ss_dssp ----EECCCCTTCCEEECCSSCCSC-C---C---CCCTTCCEEECCSSC
T ss_pred ----cccCCcCcCCEEECCCCcccc-c---c---ccCCcCCEEECCCCc
Confidence 13433 589999987653221 1 1 125899999987654
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.30 E-value=3e-08 Score=97.49 Aligned_cols=37 Identities=19% Similarity=0.062 Sum_probs=25.8
Q ss_pred CCCceEEEeccccccccccccCC------C-cccCC-CccEEEeeceEecC
Q 013278 122 CESLVSLKLDFGNREHQGVLNLP------T-CVGFS-RLKSLDLQHVESLD 164 (446)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~l~~p------~-~~~~~-~L~~L~L~~~~~~~ 164 (446)
.++|++|+|++| .+... . ...++ +|++|+|+++.+.+
T Consensus 21 ~~~L~~L~Ls~n------~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 65 (362)
T 3goz_A 21 PHGVTSLDLSLN------NLYSISTVELIQAFANTPASVTSLNLSGNSLGF 65 (362)
T ss_dssp CTTCCEEECTTS------CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG
T ss_pred CCCceEEEccCC------CCChHHHHHHHHHHHhCCCceeEEECcCCCCCH
Confidence 456888888888 55441 1 12566 88888888888776
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.28 E-value=1.5e-07 Score=87.34 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=30.0
Q ss_pred HcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCc---ccHHhHHHHhhc
Q 013278 310 ILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAE---WTVPLIIRLLNH 370 (446)
Q Consensus 310 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~---~~~l~l~~lL~~ 370 (446)
.+..+++++.|.++.+.+.. ..+..+..+++|+.|++..+... .+..++..+++.
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~ 207 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQS------VPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE 207 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHH
T ss_pred HcCcCcCCCEEECCCCcCCc------cCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHh
Confidence 34556667777776654431 22233556677777777765432 244444555543
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.25 E-value=2.2e-07 Score=86.22 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=11.2
Q ss_pred ccccCcccccccccccccC
Q 013278 206 EIDSSPLLENLKMDSCCFP 224 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~ 224 (446)
.+..+++|+.|+|.+|.+.
T Consensus 78 ~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp TTTTCTTCCEEECTTSCCC
T ss_pred HhccCCcCCEEECCCCccc
Confidence 3455666666666666543
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.24 E-value=1.9e-07 Score=85.95 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=75.2
Q ss_pred hceeeeEc--ccccCC-CccCCCCceEEEecccccccccc-ccC--C-CcccCCCccEEEeec-eEecCccccccccccc
Q 013278 104 FQNGSVNE--PIKLPR-SLVTCESLVSLKLDFGNREHQGV-LNL--P-TCVGFSRLKSLDLQH-VESLDISTTSLKYLTV 175 (446)
Q Consensus 104 l~~L~l~~--~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~-l~~--p-~~~~~~~L~~L~L~~-~~~~~~~~~~L~~L~l 175 (446)
+++|++.. ...+|. .+..+++|++|+|+++ . +.. + .+..+++|++|+|++ +.+..
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n------~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~----------- 95 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSID------VTLQQLESHSFYNLSKVTHIEIRNTRNLTY----------- 95 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECC------SSCCEECTTTEESCTTCCEEEEEEETTCCE-----------
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCC------CCcceeCHhHcCCCcCCcEEECCCCCCeeE-----------
Confidence 57777765 344554 4567899999999998 4 433 2 345889999999998 55543
Q ss_pred hhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccc---eEEEeee-ecCCCC
Q 013278 176 DEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLK---SLTLERI-EFGGDE 250 (446)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr---~L~l~~~-~~~~~~ 250 (446)
- -.. .+..+++|+.|++.+|...+... +. .++|+ .|++.+| ......
T Consensus 96 ------------------i-~~~-------~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 96 ------------------I-DPD-------ALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIP 147 (239)
T ss_dssp ------------------E-CTT-------SEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEEC
T ss_pred ------------------c-CHH-------HhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcC
Confidence 0 011 45678888888888887554332 22 24555 7777776 432100
Q ss_pred CCCceEEEecCcee-eEEEecCCCC
Q 013278 251 LDNYKLKIACSNLE-SFNIFAPLLP 274 (446)
Q Consensus 251 ~~~~~~~i~ap~L~-~L~~~~~~~~ 274 (446)
.......++|+ +|+++++...
T Consensus 148 ---~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 148 ---VNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp ---TTTTTTTBSSEEEEECCSCCCC
T ss_pred ---cccccchhcceeEEEcCCCCCc
Confidence 00011345677 7777666543
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.18 E-value=5.5e-07 Score=94.39 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=18.3
Q ss_pred cccCcccccccccccccCCcceEEEec-cccceEEEeeeec
Q 013278 207 IDSSPLLENLKMDSCCFPDLKILDISS-NSLKSLTLERIEF 246 (446)
Q Consensus 207 l~~cp~Le~L~L~~c~~~~~~~l~i~~-~~Lr~L~l~~~~~ 246 (446)
+.++++|++|+|.+|...+.....+.. ++|+.|++.+|..
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 444555555555555443332222222 4555555555543
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.16 E-value=3.5e-07 Score=96.01 Aligned_cols=134 Identities=18% Similarity=0.225 Sum_probs=83.2
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC----ccccccccccch
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD----ISTTSLKYLTVD 176 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l~ 176 (446)
++.|++.. ...+|. +..+++|+.|+|++| .+.. |....+++|+.|+|+++.+.+ ..+++|+.|+|+
T Consensus 67 L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N------~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 67 VTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN------KIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 139 (605)
T ss_dssp CCEEECTTSCCCCCGG-GGGCTTCCEEECCSS------CCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECC
T ss_pred CCEEEeeCCCCCCChh-hccCCCCCEEECcCC------CCCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECC
Confidence 56666654 223333 556778888888887 5554 445567788888888877665 257777777777
Q ss_pred hhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCce
Q 013278 177 EFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYK 255 (446)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~ 255 (446)
. ..+..+ ..+..+++|+.|+|.+|.+.+... +. .++|+.|.|.+|.+.+ +..
T Consensus 140 ~----------------N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~----l~~ 192 (605)
T 1m9s_A 140 N----------------NKITDI-----TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD----LRA 192 (605)
T ss_dssp S----------------SCCCCC-----GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB----CGG
T ss_pred C----------------CccCCc-----hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC----ChH
Confidence 6 222221 145677778888887777655433 22 3677777777776543 111
Q ss_pred EEEecCceeeEEEecCC
Q 013278 256 LKIACSNLESFNIFAPL 272 (446)
Q Consensus 256 ~~i~ap~L~~L~~~~~~ 272 (446)
....++|+.|++.++.
T Consensus 193 -l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 193 -LAGLKNLDVLELFSQE 208 (605)
T ss_dssp -GTTCTTCSEEECCSEE
T ss_pred -HccCCCCCEEEccCCc
Confidence 2235677777777653
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.15 E-value=2.1e-06 Score=89.36 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=82.4
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecCc-ccc-ccccccchhh
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLDI-STT-SLKYLTVDEF 178 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~~-~~~-~L~~L~l~~~ 178 (446)
++.|++.. ...+|..++ ++|++|+|+++ .+.. | ..+++|++|+|+++.+.+. .++ +|++|++++
T Consensus 61 L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N------~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~- 129 (571)
T 3cvr_A 61 FSELQLNRLNLSSLPDNLP--PQITVLEITQN------ALISLP--ELPASLEYLDACDNRLSTLPELPASLKHLDVDN- 129 (571)
T ss_dssp CSEEECCSSCCSCCCSCCC--TTCSEEECCSS------CCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS-
T ss_pred ccEEEeCCCCCCccCHhHc--CCCCEEECcCC------CCcccc--cccCCCCEEEccCCCCCCcchhhcCCCEEECCC-
Confidence 67777765 334676553 68999999988 5554 4 4578899999988877651 011 677777766
Q ss_pred cccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEE
Q 013278 179 LLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKI 258 (446)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i 258 (446)
..+.. ++. .+++|+.|+|.+|.+.+... ..++|+.|.+.+|...+ +.. +
T Consensus 130 ---------------N~l~~----lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~----lp~--l 178 (571)
T 3cvr_A 130 ---------------NQLTM----LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF----LPE--L 178 (571)
T ss_dssp ---------------SCCSC----CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC----CCC--C
T ss_pred ---------------CcCCC----CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC----cch--h
Confidence 44433 122 56778888888777654332 34678888888777543 222 2
Q ss_pred ecCceeeEEEecCCCC
Q 013278 259 ACSNLESFNIFAPLLP 274 (446)
Q Consensus 259 ~ap~L~~L~~~~~~~~ 274 (446)
. ++|+.|+++++...
T Consensus 179 ~-~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 179 P-ESLEALDVSTNLLE 193 (571)
T ss_dssp C-TTCCEEECCSSCCS
T ss_pred h-CCCCEEECcCCCCC
Confidence 2 77888887777554
No 101
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.14 E-value=1.1e-06 Score=82.91 Aligned_cols=37 Identities=27% Similarity=0.587 Sum_probs=34.6
Q ss_pred CCCCCCCCHHHHHHHhcCCChHHHH-hhhhcchhhhhh
Q 013278 27 GDRLSNLPEPIIHHIFSFLETIDVV-RASAVSRKWRYL 63 (446)
Q Consensus 27 ~d~is~LPdeiL~~Ils~Lp~~d~~-rts~lSrrWr~l 63 (446)
...+..|||||+..||++||.++++ |++.|||+||.+
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 3468899999999999999999999 999999999987
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.13 E-value=4.2e-07 Score=78.75 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=18.4
Q ss_pred CCceEEEecccccccccccc--C-CC-cccCCCccEEEeeceEecC
Q 013278 123 ESLVSLKLDFGNREHQGVLN--L-PT-CVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~--~-p~-~~~~~~L~~L~L~~~~~~~ 164 (446)
++|++|+|+++ .+. . |. ...+++|++|+|+++.+.+
T Consensus 24 ~~L~~L~l~~n------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~ 63 (168)
T 2ell_A 24 AAVRELVLDNC------KSNDGKIEGLTAEFVNLEFLSLINVGLIS 63 (168)
T ss_dssp TSCSEEECCSC------BCBTTBCSSCCGGGGGCCEEEEESSCCCC
T ss_pred ccCCEEECCCC------CCChhhHHHHHHhCCCCCEEeCcCCCCCC
Confidence 45666666665 333 1 22 2355566666666555443
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.11 E-value=2e-06 Score=80.49 Aligned_cols=101 Identities=21% Similarity=0.204 Sum_probs=60.1
Q ss_pred cCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHHH
Q 013278 120 VTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEA 198 (446)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 198 (446)
..+++|++|+++++ .+.. +....+++|++|+|+++.+.+. .
T Consensus 38 ~~l~~L~~L~l~~n------~i~~l~~l~~l~~L~~L~L~~N~i~~~----------------------------~---- 79 (263)
T 1xeu_A 38 KELSGVQNFNGDNS------NIQSLAGMQFFTNLKELHLSHNQISDL----------------------------S---- 79 (263)
T ss_dssp HHHTTCSEEECTTS------CCCCCTTGGGCTTCCEEECCSSCCCCC----------------------------G----
T ss_pred hhcCcCcEEECcCC------CcccchHHhhCCCCCEEECCCCccCCC----------------------------h----
Confidence 34677888888877 4544 4455677888888887776650 0
Q ss_pred hhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCC
Q 013278 199 LKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPL 272 (446)
Q Consensus 199 ~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 272 (446)
-+..+++|+.|+|.+|...+...+.. ++|+.|.+.+|...+ ... ....++|+.|+++++.
T Consensus 80 -------~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~----~~~-l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 80 -------PLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRD----TDS-LIHLKNLEILSIRNNK 139 (263)
T ss_dssp -------GGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSB----SGG-GTTCTTCCEEECTTSC
T ss_pred -------hhccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCC----Chh-hcCcccccEEECCCCc
Confidence 14567788888888877554333222 667777777766532 110 1124455555555543
No 104
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.09 E-value=2.6e-06 Score=89.16 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=77.0
Q ss_pred CCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHHHh
Q 013278 123 ESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEAL 199 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 199 (446)
+++++|+|+++ .+.. + .+.++++|++|+|+++.+.. .-..
T Consensus 52 ~~~~~LdLs~N------~i~~l~~~~f~~l~~L~~L~Ls~N~i~~------------------------------i~~~- 94 (635)
T 4g8a_A 52 FSTKNLDLSFN------PLRHLGSYSFFSFPELQVLDLSRCEIQT------------------------------IEDG- 94 (635)
T ss_dssp TTCCEEECTTS------CCCEECTTTTTTCTTCCEEECTTCCCCE------------------------------ECTT-
T ss_pred cCCCEEEeeCC------CCCCCCHHHHhCCCCCCEEECCCCcCCC------------------------------cChh-
Confidence 36788888887 5543 2 34577888888888876654 0011
Q ss_pred hhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCce--
Q 013278 200 KLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDF-- 276 (446)
Q Consensus 200 ~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~-- 276 (446)
.+.++++|++|+|.+|...+...-.+. .++|++|++.+|..... .....-..++|++|+++++....+
T Consensus 95 ------~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l---~~~~~~~L~~L~~L~Ls~N~l~~~~~ 165 (635)
T 4g8a_A 95 ------AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL---ENFPIGHLKTLKELNVAHNLIQSFKL 165 (635)
T ss_dssp ------TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCS---TTCCCTTCTTCCEEECCSSCCCCCCC
T ss_pred ------HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCC---ChhhhhcCcccCeeccccCccccCCC
Confidence 466788888888888864432211122 26888888888876431 111223467888888888765432
Q ss_pred --eecCCCCceEEEEEE
Q 013278 277 --TLESLNSLQNAFIFL 291 (446)
Q Consensus 277 --~l~~~p~L~~l~l~~ 291 (446)
.+..+++|+.+++..
T Consensus 166 ~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 166 PEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CGGGGGCTTCCEEECCS
T ss_pred chhhccchhhhhhcccC
Confidence 235677888877754
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.06 E-value=5.6e-07 Score=80.85 Aligned_cols=134 Identities=16% Similarity=0.094 Sum_probs=72.4
Q ss_pred CCceEEEeccccccccccccC-C-C-cccCCCccEEEeeceEecC------ccccccccccchhhcccCcccCccchhhh
Q 013278 123 ESLVSLKLDFGNREHQGVLNL-P-T-CVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEPKGLRSCKVIC 193 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~-p-~-~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 193 (446)
++|++|+|+++ .+.. + . ...+++|++|+|+++.+.+ ..+++|++|++.+
T Consensus 28 ~~l~~L~l~~n------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~---------------- 85 (208)
T 2o6s_A 28 AQTTYLDLETN------SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST---------------- 85 (208)
T ss_dssp TTCSEEECCSS------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS----------------
T ss_pred CCCcEEEcCCC------ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC----------------
Confidence 35666666666 3333 1 1 2356666666666665543 1355666666655
Q ss_pred hhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCC
Q 013278 194 ESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPL 272 (446)
Q Consensus 194 ~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 272 (446)
..+.. ..+..+..+++|+.|+|.+|.+.+...-.+. .++|++|++.+|.+.+. ........++|++|.+.++.
T Consensus 86 n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 86 NQLQS---LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV---PDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC---CTTTTTTCTTCCEEECCSCC
T ss_pred CcCCc---cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee---CHHHhccCCCccEEEecCCC
Confidence 22221 0111456778888888888765433221122 36788888887765431 11112235778888887763
Q ss_pred CCceeecCCCCceEEE
Q 013278 273 LPDFTLESLNSLQNAF 288 (446)
Q Consensus 273 ~~~~~l~~~p~L~~l~ 288 (446)
. ...+++|+.+.
T Consensus 160 ~----~~~~~~l~~L~ 171 (208)
T 2o6s_A 160 W----DCTCPGIRYLS 171 (208)
T ss_dssp B----CCCTTTTHHHH
T ss_pred e----ecCCCCHHHHH
Confidence 3 23455555543
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.04 E-value=4.6e-07 Score=76.80 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=9.7
Q ss_pred ccccCcccccccccccccC
Q 013278 206 EIDSSPLLENLKMDSCCFP 224 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~ 224 (446)
.+..+++|+.|++.+|.+.
T Consensus 83 ~~~~l~~L~~L~ls~N~i~ 101 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIK 101 (149)
T ss_dssp HHHHCTTCCEEECTTSCCC
T ss_pred HhhhCCCCCEEECCCCcCC
Confidence 3344555555555555443
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.99 E-value=1.1e-06 Score=82.32 Aligned_cols=113 Identities=17% Similarity=0.199 Sum_probs=70.1
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecCc---cccccccccchh
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLDI---STTSLKYLTVDE 177 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~~---~~~~L~~L~l~~ 177 (446)
++.|++.. ...+| .+..+++|++|+|+++ .+.. +....+++|++|+|+++.+.+. ..++|++|++++
T Consensus 43 L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N------~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~ 115 (263)
T 1xeu_A 43 VQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN------QISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115 (263)
T ss_dssp CSEEECTTSCCCCCT-TGGGCTTCCEEECCSS------CCCCCGGGTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCS
T ss_pred CcEEECcCCCcccch-HHhhCCCCCEEECCCC------ccCCChhhccCCCCCEEECCCCccCCcCccccCcccEEEccC
Confidence 66776655 33455 5667889999999998 5554 3356789999999999887651 125666666665
Q ss_pred hcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeec
Q 013278 178 FLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEF 246 (446)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~ 246 (446)
..+..+ + -+..+++|+.|+|.+|...+... +. .++|+.|++.+|..
T Consensus 116 ----------------N~l~~~----~-~l~~l~~L~~L~Ls~N~i~~~~~--l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 116 ----------------NELRDT----D-SLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp ----------------SCCSBS----G-GGTTCTTCCEEECTTSCCCBCGG--GGGCTTCCEEECTTSCC
T ss_pred ----------------CccCCC----h-hhcCcccccEEECCCCcCCCChH--HccCCCCCEEECCCCcC
Confidence 332221 0 24566677777777766544321 11 25666666666654
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.99 E-value=2.8e-07 Score=90.48 Aligned_cols=226 Identities=17% Similarity=0.200 Sum_probs=134.7
Q ss_pred EEeccccccccccccC--CCcccCC-CccEEEeeceEecCc----------ccc-ccccccchhhcccCcccCccchhhh
Q 013278 128 LKLDFGNREHQGVLNL--PTCVGFS-RLKSLDLQHVESLDI----------STT-SLKYLTVDEFLLSEPKGLRSCKVIC 193 (446)
Q Consensus 128 L~L~~~~~~~~~~l~~--p~~~~~~-~L~~L~L~~~~~~~~----------~~~-~L~~L~l~~~~~~~~~~~~~~~~~~ 193 (446)
++|+.+ .+.. |.....+ +|++|+|+++.+.+. .++ +|++|++++..++.. .+
T Consensus 3 ~~ls~n------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----~~---- 68 (362)
T 3goz_A 3 YKLTLH------PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK----NS---- 68 (362)
T ss_dssp EECCCC------TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS----CH----
T ss_pred cccccc------cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH----HH----
Confidence 455555 4443 3444444 599999999998763 356 899999987211000 00
Q ss_pred hhHHHhhhccccccccC-cccccccccccccCCcceEE----Ee-c-cccceEEEeeeecCCCCCCCceEE--E-e-cCc
Q 013278 194 ESLEALKLHFGREIDSS-PLLENLKMDSCCFPDLKILD----IS-S-NSLKSLTLERIEFGGDELDNYKLK--I-A-CSN 262 (446)
Q Consensus 194 ~~l~~~~~~~~~ll~~c-p~Le~L~L~~c~~~~~~~l~----i~-~-~~Lr~L~l~~~~~~~~~~~~~~~~--i-~-ap~ 262 (446)
..+.. ++..+ +.|++|+|.+|...+...-. +. . ++|+.|++.+|...+ .+...+. + . ..+
T Consensus 69 ~~l~~-------~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~l~~~~~~ 139 (362)
T 3goz_A 69 DELVQ-------ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS--KSSSEFKQAFSNLPAS 139 (362)
T ss_dssp HHHHH-------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG--SCHHHHHHHHTTSCTT
T ss_pred HHHHH-------HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc--HHHHHHHHHHHhCCCc
Confidence 22222 44444 99999999999854322211 11 1 689999999998643 1111111 1 1 258
Q ss_pred eeeEEEecCCCCcee-------ecCCC-CceEEEEEEEeccchhhhhHHhHHHHHHcccC-CCccEEEEechhHHHHHHH
Q 013278 263 LESFNIFAPLLPDFT-------LESLN-SLQNAFIFLETIGEYMEAKEICHRMSKILNGL-RDVKVLKLSCTLYQFLNAI 333 (446)
Q Consensus 263 L~~L~~~~~~~~~~~-------l~~~p-~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~l~~~~~~~~~~~ 333 (446)
|++|+++++...... +...+ +|+.+++....-.+.. ...+...+..+ ++|+.|.++.+.+.....
T Consensus 140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~-----~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~- 213 (362)
T 3goz_A 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN-----CAELAKFLASIPASVTSLDLSANLLGLKSY- 213 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-----HHHHHHHHHTSCTTCCEEECTTSCGGGSCH-
T ss_pred eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh-----HHHHHHHHHhCCCCCCEEECCCCCCChhHH-
Confidence 999999988654211 23444 8999988654211110 22346677777 499999999876532000
Q ss_pred hhhcccCCCc-cCccceEEEEeecCcc-cHHhHHHHhhcCCCCcEEEEEecC
Q 013278 334 LEQRSYFSAS-FNNLKSLILCVTTAEW-TVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 334 ~~~~~~~~p~-f~~L~~L~l~~~~~~~-~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
..-+..+.. .++|++|++..+.... ..-.+..+++.+++|+.|.+....
T Consensus 214 -~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 214 -AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp -HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred -HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 000001222 3589999998765432 333346777889999999998765
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.97 E-value=3.2e-06 Score=87.93 Aligned_cols=182 Identities=13% Similarity=0.066 Sum_probs=113.6
Q ss_pred CCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC--ccccccccccchhhcccCcccCccchhhhhhHHHh
Q 013278 123 ESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD--ISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEAL 199 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 199 (446)
.+|+.|+|+++ .+.. |.. -+++|++|+|+++.+.. ..+++|++|++++ ..+..
T Consensus 59 ~~L~~L~Ls~n------~L~~lp~~-l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~----------------N~l~~- 114 (571)
T 3cvr_A 59 NQFSELQLNRL------NLSSLPDN-LPPQITVLEITQNALISLPELPASLEYLDACD----------------NRLST- 114 (571)
T ss_dssp TTCSEEECCSS------CCSCCCSC-CCTTCSEEECCSSCCSCCCCCCTTCCEEECCS----------------SCCSC-
T ss_pred CCccEEEeCCC------CCCccCHh-HcCCCCEEECcCCCCcccccccCCCCEEEccC----------------CCCCC-
Confidence 58999999999 5554 432 25899999999998765 3577888888887 44443
Q ss_pred hhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCceeec
Q 013278 200 KLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLE 279 (446)
Q Consensus 200 ~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~l~ 279 (446)
++. +. .+|+.|+|.+|.+.+... ..++|+.|++.+|...+ +.. ..++|++|.++++....+...
T Consensus 115 ---ip~-l~--~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~----lp~---~l~~L~~L~Ls~N~L~~lp~l 178 (571)
T 3cvr_A 115 ---LPE-LP--ASLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM----LPE---LPTSLEVLSVRNNQLTFLPEL 178 (571)
T ss_dssp ---CCC-CC--TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC----CCC---CCTTCCEEECCSSCCSCCCCC
T ss_pred ---cch-hh--cCCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc----CCC---cCCCcCEEECCCCCCCCcchh
Confidence 222 22 289999999988766443 45789999999888653 222 467899999988865432221
Q ss_pred CCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCc
Q 013278 280 SLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAE 358 (446)
Q Consensus 280 ~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~ 358 (446)
.++|+.+++..+.....+. +. ..+....+.++.|.++.+.+.. .+..+..+++|+.|++..+...
T Consensus 179 -~~~L~~L~Ls~N~L~~lp~---~~---~~L~~~~~~L~~L~Ls~N~l~~-------lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 179 -PESLEALDVSTNLLESLPA---VP---VRNHHSEETEIFFRCRENRITH-------IPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp -CTTCCEEECCSSCCSSCCC---CC-----------CCEEEECCSSCCCC-------CCGGGGGSCTTEEEECCSSSCC
T ss_pred -hCCCCEEECcCCCCCchhh---HH---HhhhcccccceEEecCCCccee-------cCHHHhcCCCCCEEEeeCCcCC
Confidence 1778888776442111110 00 0111122233888888765531 1222335778888888776543
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.96 E-value=1.2e-06 Score=79.75 Aligned_cols=43 Identities=19% Similarity=0.531 Sum_probs=28.0
Q ss_pred ccCCCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC
Q 013278 114 KLPRSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 114 ~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~ 164 (446)
.+|..+. ++|+.|+|+++ .+.. + .+..+++|++|+|+++.+..
T Consensus 25 ~iP~~l~--~~l~~L~l~~n------~i~~i~~~~~~~l~~L~~L~Ls~N~i~~ 70 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQN------TIKVIPPGAFSPYKKLRRIDLSNNQISE 70 (220)
T ss_dssp SCCSSCC--TTCCEEECCSS------CCCEECTTSSTTCTTCCEEECCSSCCCE
T ss_pred cCCCccC--cCCCEEECCCC------cCCCcCHhHhhCCCCCCEEECCCCcCCC
Confidence 4454433 57888888887 4443 2 34467888888888876654
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.94 E-value=1.5e-06 Score=75.26 Aligned_cols=87 Identities=21% Similarity=0.101 Sum_probs=57.8
Q ss_pred cCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcc
Q 013278 148 GFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLK 227 (446)
Q Consensus 148 ~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~ 227 (446)
..++|++|+|+++.+.+ ..+.. .+..+++|+.|++.+|...+..
T Consensus 22 ~~~~L~~L~l~~n~l~~-----------------------------~~i~~-------~~~~l~~L~~L~l~~n~l~~~~ 65 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND-----------------------------GKIEG-------LTAEFVNLEFLSLINVGLISVS 65 (168)
T ss_dssp CTTSCSEEECCSCBCBT-----------------------------TBCSS-------CCGGGGGCCEEEEESSCCCCCS
T ss_pred CcccCCEEECCCCCCCh-----------------------------hhHHH-------HHHhCCCCCEEeCcCCCCCChh
Confidence 45789999999988774 22333 5677889999999998866541
Q ss_pred eEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCC
Q 013278 228 ILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLP 274 (446)
Q Consensus 228 ~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~ 274 (446)
.--..++|+.|++.+|...+ .........|+|++|.++++...
T Consensus 66 -~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~ 108 (168)
T 2ell_A 66 -NLPKLPKLKKLELSENRIFG---GLDMLAEKLPNLTHLNLSGNKLK 108 (168)
T ss_dssp -SCCCCSSCCEEEEESCCCCS---CCCHHHHHCTTCCEEECBSSSCC
T ss_pred -hhccCCCCCEEECcCCcCch---HHHHHHhhCCCCCEEeccCCccC
Confidence 11123788888888887643 12222234677888888777654
No 112
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=1.6e-06 Score=75.71 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=55.9
Q ss_pred ccccCCCccCCCCceEEEeccccccccccccC---CCcccCCCccEEEeeceE-ecCccccccccccchhhcccCcccCc
Q 013278 112 PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL---PTCVGFSRLKSLDLQHVE-SLDISTTSLKYLTVDEFLLSEPKGLR 187 (446)
Q Consensus 112 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~---p~~~~~~~L~~L~L~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 187 (446)
...+|......-.|++|+|++| .+.+ ....++++|++|+|++|. +++
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~------~Itd~GL~~L~~~~~L~~L~L~~C~~ItD----------------------- 100 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDS------CIMSIGFDHMEGLQYVEKIRLCKCHYIED----------------------- 100 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESC------CCCGGGGGGGTTCSCCCEEEEESCTTCCH-----------------------
T ss_pred cccCCcccCCCceEeEEeCcCC------CccHHHHHHhcCCCCCCEEEeCCCCccCH-----------------------
Confidence 3456654334457889999888 4433 123478888888888885 554
Q ss_pred cchhhhhhHHHhhhccccccc---cCcccccccccccc-cCC--cceEEEeccccceEEEeeeec
Q 013278 188 SCKVICESLEALKLHFGREID---SSPLLENLKMDSCC-FPD--LKILDISSNSLKSLTLERIEF 246 (446)
Q Consensus 188 ~~~~~~~~l~~~~~~~~~ll~---~cp~Le~L~L~~c~-~~~--~~~l~i~~~~Lr~L~l~~~~~ 246 (446)
.++.. +.. .|++|++|+|.+|. .++ +..+. ..++|++|++.+|..
T Consensus 101 ------~gL~~-------L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 101 ------GCLER-------LSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPG 151 (176)
T ss_dssp ------HHHHH-------HHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTT
T ss_pred ------HHHHH-------HHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCC
Confidence 66766 443 26788888888875 221 11111 235666666666643
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.87 E-value=2.5e-06 Score=83.25 Aligned_cols=218 Identities=14% Similarity=0.118 Sum_probs=121.0
Q ss_pred cccCCCccCCCCceEEEeccccccccccccC-C--CcccCCCccEEEeeceEecC----c---cccccccccc-hhhccc
Q 013278 113 IKLPRSLVTCESLVSLKLDFGNREHQGVLNL-P--TCVGFSRLKSLDLQHVESLD----I---STTSLKYLTV-DEFLLS 181 (446)
Q Consensus 113 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p--~~~~~~~L~~L~L~~~~~~~----~---~~~~L~~L~l-~~~~~~ 181 (446)
..+|..+. +++++|+|+++ .+.. | .+.++++|++|+|+++.+.+ + ++++|+.+.. ..
T Consensus 22 t~iP~~l~--~~l~~L~Ls~N------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~---- 89 (350)
T 4ay9_X 22 TEIPSDLP--RNAIELRFVLT------KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA---- 89 (350)
T ss_dssp CSCCTTCC--TTCSEEEEESC------CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE----
T ss_pred CccCcCcC--CCCCEEEccCC------cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC----
Confidence 35565442 57899999998 6654 3 24578999999999886533 1 3444443222 22
Q ss_pred CcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEE-EeccccceEEEeeeecCCCCCCCceEEEec
Q 013278 182 EPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILD-ISSNSLKSLTLERIEFGGDELDNYKLKIAC 260 (446)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~-i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~a 260 (446)
..+.. ..++.+..+++|+.|++.+|......... ....++..|.+.++.... .-....+.-..
T Consensus 90 ------------N~l~~---l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~ 153 (350)
T 4ay9_X 90 ------------NNLLY---INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLS 153 (350)
T ss_dssp ------------TTCCE---ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSB
T ss_pred ------------Ccccc---cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcc
Confidence 22221 11225778899999999998765433222 233566777776653211 00000001112
Q ss_pred CceeeEEEecCCCCceee--cCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcc
Q 013278 261 SNLESFNIFAPLLPDFTL--ESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRS 338 (446)
Q Consensus 261 p~L~~L~~~~~~~~~~~l--~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 338 (446)
..++.|.++++....+.- ....+|+++.+... .... .+ -.+.++.+++|+.|+++.+.+..
T Consensus 154 ~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~--n~l~---~i---~~~~f~~l~~L~~LdLs~N~l~~--------- 216 (350)
T 4ay9_X 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN--NNLE---EL---PNDVFHGASGPVILDISRTRIHS--------- 216 (350)
T ss_dssp SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC--TTCC---CC---CTTTTTTEECCSEEECTTSCCCC---------
T ss_pred hhhhhhccccccccCCChhhccccchhHHhhccC--Cccc---CC---CHHHhccCcccchhhcCCCCcCc---------
Confidence 467888888876653322 23344555444211 0000 00 13456788899999998876532
Q ss_pred cCCC--ccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEe
Q 013278 339 YFSA--SFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYF 381 (446)
Q Consensus 339 ~~~p--~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~ 381 (446)
+| .|.+|++|.+.....-..+ + -+...++|+.+++..
T Consensus 217 --lp~~~~~~L~~L~~l~~~~l~~l---P-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 217 --LPSYGLENLKKLRARSTYNLKKL---P-TLEKLVALMEASLTY 255 (350)
T ss_dssp --CCSSSCTTCCEEECTTCTTCCCC---C-CTTTCCSCCEEECSC
T ss_pred --cChhhhccchHhhhccCCCcCcC---C-CchhCcChhhCcCCC
Confidence 33 5778888876543221122 2 256778888888743
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.85 E-value=6.3e-07 Score=78.38 Aligned_cols=124 Identities=9% Similarity=-0.062 Sum_probs=75.6
Q ss_pred cCCCCceEEEeccccccccccccC-CCcccC-CCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHH
Q 013278 120 VTCESLVSLKLDFGNREHQGVLNL-PTCVGF-SRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLE 197 (446)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~-~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 197 (446)
..+.+|++|+|+++ .+.. |....+ ++|+.|+|+++.+.+ -
T Consensus 16 ~~~~~L~~L~l~~n------~l~~i~~~~~~~~~L~~L~Ls~N~l~~-----------------------------~--- 57 (176)
T 1a9n_A 16 TNAVRDRELDLRGY------KIPVIENLGATLDQFDAIDFSDNEIRK-----------------------------L--- 57 (176)
T ss_dssp ECTTSCEEEECTTS------CCCSCCCGGGGTTCCSEEECCSSCCCE-----------------------------E---
T ss_pred CCcCCceEEEeeCC------CCchhHHhhhcCCCCCEEECCCCCCCc-----------------------------c---
Confidence 45788999999998 5554 444444 499999999887765 1
Q ss_pred HhhhccccccccCcccccccccccccCCcceEE-EeccccceEEEeeeecCCCCCCCce--EEEecCceeeEEEecCCCC
Q 013278 198 ALKLHFGREIDSSPLLENLKMDSCCFPDLKILD-ISSNSLKSLTLERIEFGGDELDNYK--LKIACSNLESFNIFAPLLP 274 (446)
Q Consensus 198 ~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~-i~~~~Lr~L~l~~~~~~~~~~~~~~--~~i~ap~L~~L~~~~~~~~ 274 (446)
. -+..+++|+.|+|.+|.+.+...-. -..++|+.|++.+|.... ... .....|+|+.|.++++...
T Consensus 58 ~-------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~----~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 58 D-------GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE----LGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp C-------CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC----GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred c-------ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc----chhhHhhhcCCCCCEEEecCCCCC
Confidence 1 3456667777777776543221101 112667777777766532 111 1124577777777776542
Q ss_pred ce------eecCCCCceEEEEEEE
Q 013278 275 DF------TLESLNSLQNAFIFLE 292 (446)
Q Consensus 275 ~~------~l~~~p~L~~l~l~~~ 292 (446)
.. .+..+|+|+.+++...
T Consensus 127 ~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 127 NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CcHhHHHHHHHHCCccceeCCCcC
Confidence 21 3567888888877655
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.85 E-value=4.4e-06 Score=76.38 Aligned_cols=104 Identities=16% Similarity=0.021 Sum_probs=55.5
Q ss_pred CCceEEEeccccccccccccC--CC-cccCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHHHh
Q 013278 123 ESLVSLKLDFGNREHQGVLNL--PT-CVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEAL 199 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~--p~-~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 199 (446)
++|++|+|+++ .+.. |. ...+++|++|+|+++.+... -..
T Consensus 40 ~~L~~L~Ls~n------~i~~~~~~~~~~l~~L~~L~L~~N~l~~i------------------------------~~~- 82 (229)
T 3e6j_A 40 TNAQILYLHDN------QITKLEPGVFDSLINLKELYLGSNQLGAL------------------------------PVG- 82 (229)
T ss_dssp TTCSEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSCCCCC------------------------------CTT-
T ss_pred CCCCEEEcCCC------ccCccCHHHhhCccCCcEEECCCCCCCCc------------------------------Chh-
Confidence 67778888877 4443 22 34677788888877766440 011
Q ss_pred hhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCC
Q 013278 200 KLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLL 273 (446)
Q Consensus 200 ~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~ 273 (446)
.+..+++|+.|+|.+|.+.+...-.+. .++|+.|.+.+|.... +.......++|+.|+++++..
T Consensus 83 ------~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~----lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 83 ------VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE----LPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp ------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS----CCTTGGGCTTCSEEECCSSCC
T ss_pred ------hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc----cCcccccCCCCCEEECCCCcC
Confidence 445667777777777664432211111 2566666666655432 100012335555555555543
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.84 E-value=6.4e-06 Score=75.26 Aligned_cols=124 Identities=19% Similarity=0.062 Sum_probs=77.2
Q ss_pred hceeeeEc---ccccCCCccCCCCceEEEeccccccccccccC-C-C-cccCCCccEEEeeceEecCccccccccccchh
Q 013278 104 FQNGSVNE---PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-P-T-CVGFSRLKSLDLQHVESLDISTTSLKYLTVDE 177 (446)
Q Consensus 104 l~~L~l~~---~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p-~-~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~ 177 (446)
++.|++.. ....|..+..+++|++|+|+++ .+.. | . +..+++|++|+|+++.+...
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N------~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l------------ 103 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSN------QLGALPVGVFDSLTQLTVLDLGTNQLTVL------------ 103 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSCCCCC------------
T ss_pred CCEEEcCCCccCccCHHHhhCccCCcEEECCCC------CCCCcChhhcccCCCcCEEECCCCcCCcc------------
Confidence 56777765 2233556667899999999999 5554 3 2 35789999999999987651
Q ss_pred hcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEE
Q 013278 178 FLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLK 257 (446)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~ 257 (446)
... .+..+++|+.|+|.+|.+.....-....++|+.|++.+|...... ....
T Consensus 104 ------------------~~~-------~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~---~~~~ 155 (229)
T 3e6j_A 104 ------------------PSA-------VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP---HGAF 155 (229)
T ss_dssp ------------------CTT-------TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC---TTTT
T ss_pred ------------------Chh-------HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC---HHHH
Confidence 011 455667777777777764432110112367777777777654311 1111
Q ss_pred EecCceeeEEEecCCC
Q 013278 258 IACSNLESFNIFAPLL 273 (446)
Q Consensus 258 i~ap~L~~L~~~~~~~ 273 (446)
...++|+.|.+.++..
T Consensus 156 ~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCTTCCEEECTTSCB
T ss_pred hCCCCCCEEEeeCCCc
Confidence 2357788888877654
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.80 E-value=6.9e-06 Score=74.59 Aligned_cols=123 Identities=12% Similarity=0.110 Sum_probs=75.4
Q ss_pred hceeeeEc--ccccCC-CccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecCccccccccccchh
Q 013278 104 FQNGSVNE--PIKLPR-SLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLDISTTSLKYLTVDE 177 (446)
Q Consensus 104 l~~L~l~~--~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~ 177 (446)
+++|++.. ...+|. .+..+++|++|+|+++ .+.. | .+.++++|++|+|+++.+...
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l------------ 95 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN------QISELAPDAFQGLRSLNSLVLYGNKITEL------------ 95 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSS------CCCEECTTTTTTCSSCCEEECCSSCCCCC------------
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC------cCCCcCHHHhhCCcCCCEEECCCCcCCcc------------
Confidence 46666655 233443 4556899999999999 5543 3 345789999999999987651
Q ss_pred hcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceE
Q 013278 178 FLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKL 256 (446)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~ 256 (446)
-.. .+..+++|+.|+|.+|...+...-.+. .++|+.|++.+|.+..... ..
T Consensus 96 ------------------~~~-------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~ 147 (220)
T 2v9t_B 96 ------------------PKS-------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---GT 147 (220)
T ss_dssp ------------------CTT-------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TT
T ss_pred ------------------CHh-------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH---HH
Confidence 011 455667777777777765433221222 2667777777776543111 11
Q ss_pred EEecCceeeEEEecCC
Q 013278 257 KIACSNLESFNIFAPL 272 (446)
Q Consensus 257 ~i~ap~L~~L~~~~~~ 272 (446)
....++|++|.+.++.
T Consensus 148 ~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HhCCCCCCEEEeCCCC
Confidence 1235677888877764
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.80 E-value=1.1e-06 Score=74.42 Aligned_cols=87 Identities=26% Similarity=0.232 Sum_probs=53.9
Q ss_pred cCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcc
Q 013278 148 GFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLK 227 (446)
Q Consensus 148 ~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~ 227 (446)
.+++|++|+++++.+.+ ..+.. .+..+++|+.|++.+|...+..
T Consensus 15 ~~~~l~~L~l~~n~l~~-----------------------------~~~~~-------~~~~l~~L~~L~l~~n~l~~~~ 58 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNE-----------------------------GKLEG-------LTDEFEELEFLSTINVGLTSIA 58 (149)
T ss_dssp CGGGCSEEECTTCBCBT-----------------------------TBCCS-------CCTTCTTCCEEECTTSCCCCCT
T ss_pred CCccCeEEEccCCcCCh-----------------------------hHHHH-------HHhhcCCCcEEECcCCCCCCch
Confidence 34788888888887763 12223 5677888888888888765541
Q ss_pred eEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCC
Q 013278 228 ILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLP 274 (446)
Q Consensus 228 ~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~ 274 (446)
.+ -..++|+.|++.+|...+ .........++|++|.++++...
T Consensus 59 ~~-~~l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~ls~N~i~ 101 (149)
T 2je0_A 59 NL-PKLNKLKKLELSDNRVSG---GLEVLAEKCPNLTHLNLSGNKIK 101 (149)
T ss_dssp TC-CCCTTCCEEECCSSCCCS---CTHHHHHHCTTCCEEECTTSCCC
T ss_pred hh-hcCCCCCEEECCCCcccc---hHHHHhhhCCCCCEEECCCCcCC
Confidence 11 123678888887777542 12222223567777777766543
No 119
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.77 E-value=5.2e-06 Score=77.51 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhh
Q 013278 30 LSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYL 63 (446)
Q Consensus 30 is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~l 63 (446)
|+.||+||+.+|||||+.+|+++++.|||+||.+
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999975
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.76 E-value=5e-06 Score=75.54 Aligned_cols=130 Identities=15% Similarity=0.241 Sum_probs=65.3
Q ss_pred ccCCCccCCCCceEEEeccccccccccccC--C-C-cccCCCccEEEeeceEecCccccccccccchhhcccCcccCccc
Q 013278 114 KLPRSLVTCESLVSLKLDFGNREHQGVLNL--P-T-CVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSC 189 (446)
Q Consensus 114 ~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~-~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 189 (446)
.+|..+. +.+++|+|+++ .+.. + . +..+++|++|+|+++.+.+.
T Consensus 25 ~iP~~~~--~~~~~L~L~~N------~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i------------------------ 72 (220)
T 2v70_A 25 KIPEHIP--QYTAELRLNNN------EFTVLEATGIFKKLPQLRKINFSNNKITDI------------------------ 72 (220)
T ss_dssp SCCSCCC--TTCSEEECCSS------CCCEECCCCCGGGCTTCCEEECCSSCCCEE------------------------
T ss_pred cCccCCC--CCCCEEEcCCC------cCCccCchhhhccCCCCCEEECCCCcCCEE------------------------
Confidence 4454332 34677888877 4443 2 1 34677888888877766540
Q ss_pred hhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEE
Q 013278 190 KVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNI 268 (446)
Q Consensus 190 ~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~ 268 (446)
... .+..+++|+.|+|.+|...+...-.+. .++|+.|.+.+|..... ........++|+.|++
T Consensus 73 ------~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 73 ------EEG-------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV---GNDSFIGLSSVRLLSL 136 (220)
T ss_dssp ------CTT-------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCB---CTTSSTTCTTCSEEEC
T ss_pred ------CHH-------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeE---CHhHcCCCccCCEEEC
Confidence 001 334455555555555554332211111 24555555555554320 0011113456666666
Q ss_pred ecCCCCce---eecCCCCceEEEEEE
Q 013278 269 FAPLLPDF---TLESLNSLQNAFIFL 291 (446)
Q Consensus 269 ~~~~~~~~---~l~~~p~L~~l~l~~ 291 (446)
+++....+ .+..+++|+.+++..
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecC
Confidence 66554332 244566677666643
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.75 E-value=8e-06 Score=73.17 Aligned_cols=17 Identities=18% Similarity=-0.005 Sum_probs=14.0
Q ss_pred cCCCccEEEeeceEecC
Q 013278 148 GFSRLKSLDLQHVESLD 164 (446)
Q Consensus 148 ~~~~L~~L~L~~~~~~~ 164 (446)
..++|++|+|+++.+.+
T Consensus 26 ~~~~l~~L~l~~n~l~~ 42 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKS 42 (208)
T ss_dssp CCTTCSEEECCSSCCCC
T ss_pred CCCCCcEEEcCCCccCc
Confidence 35789999999998765
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.74 E-value=6e-07 Score=80.15 Aligned_cols=83 Identities=19% Similarity=0.176 Sum_probs=49.0
Q ss_pred CccCCCCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhH
Q 013278 118 SLVTCESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESL 196 (446)
Q Consensus 118 ~l~~~~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 196 (446)
.+..+++|++|+|+++ .+.. |....+++|++|+|+++.+.. +
T Consensus 43 ~~~~l~~L~~L~ls~n------~l~~l~~~~~l~~L~~L~l~~n~l~~-------------------------------l 85 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN------NIEKISSLSGMENLRILSLGRNLIKK-------------------------------I 85 (198)
T ss_dssp HHHHTTTCSEEECSEE------EESCCCCHHHHTTCCEEEEEEEEECS-------------------------------C
T ss_pred HHhcCCCCCEEECCCC------CCccccccccCCCCCEEECCCCCccc-------------------------------c
Confidence 4555667777777776 4443 444456777777777776654 1
Q ss_pred HHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeec
Q 013278 197 EALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEF 246 (446)
Q Consensus 197 ~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~ 246 (446)
.. .+..+++|+.|++.+|...+.. .+. .++|+.|++.+|..
T Consensus 86 ~~-------~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 86 EN-------LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp SS-------HHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEEC
T ss_pred cc-------hhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcC
Confidence 11 3344567777777777655432 111 25677777776664
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.71 E-value=1.2e-05 Score=73.08 Aligned_cols=124 Identities=12% Similarity=0.026 Sum_probs=75.4
Q ss_pred hceeeeEc--cccc-CC-CccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecCccccccccccch
Q 013278 104 FQNGSVNE--PIKL-PR-SLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLDISTTSLKYLTVD 176 (446)
Q Consensus 104 l~~L~l~~--~~~l-p~-~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~ 176 (446)
+++|++.. ...+ |. .+..+++|++|+|+++ .+.. + .+..+++|++|+|+++.+...
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N------~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~----------- 96 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN------KITDIEEGAFEGASGVNEILLTSNRLENV----------- 96 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS------CCCEECTTTTTTCTTCCEEECCSSCCCCC-----------
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCC------cCCEECHHHhCCCCCCCEEECCCCccCcc-----------
Confidence 35666654 2233 32 3556899999999999 5554 3 355889999999999988651
Q ss_pred hhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCce
Q 013278 177 EFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYK 255 (446)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~ 255 (446)
... .+..+++|++|+|.+|.+.+...-.+. .++|+.|++.+|...+.. ..
T Consensus 97 -------------------~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~ 147 (220)
T 2v70_A 97 -------------------QHK-------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA---PG 147 (220)
T ss_dssp -------------------CGG-------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC---TT
T ss_pred -------------------CHh-------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC---HH
Confidence 111 455667777777777765443222222 266777777776654310 11
Q ss_pred EEEecCceeeEEEecCCC
Q 013278 256 LKIACSNLESFNIFAPLL 273 (446)
Q Consensus 256 ~~i~ap~L~~L~~~~~~~ 273 (446)
.....++|++|.+.++..
T Consensus 148 ~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTTTCTTCCEEECCSCCE
T ss_pred HhcCCCCCCEEEecCcCC
Confidence 112356777887777643
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.67 E-value=1.3e-05 Score=78.52 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=65.0
Q ss_pred CceEEEeccccccccccccC--CC-cc-cCCCccEEEeeceEecC------ccccccccccchhhcccCcccCccchhhh
Q 013278 124 SLVSLKLDFGNREHQGVLNL--PT-CV-GFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEPKGLRSCKVIC 193 (446)
Q Consensus 124 ~L~~L~L~~~~~~~~~~l~~--p~-~~-~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 193 (446)
.++.|+|+++ .+.. +. .. .+++|++|+|+++.+.. .++++|++|++++
T Consensus 40 ~l~~L~Ls~N------~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~---------------- 97 (361)
T 2xot_A 40 YTALLDLSHN------NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS---------------- 97 (361)
T ss_dssp TCSEEECCSS------CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS----------------
T ss_pred CCCEEECCCC------CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC----------------
Confidence 5777888877 4443 22 22 67788888887776554 1455666666655
Q ss_pred hhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCC
Q 013278 194 ESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPL 272 (446)
Q Consensus 194 ~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 272 (446)
..+.. ..+..+..+++|+.|+|.+|.+.+...-.+. .++|+.|.+.+|.........-.-....++|+.|+++++.
T Consensus 98 N~l~~---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 98 NHLHT---LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CcCCc---CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 32222 1111455667777777777664322111111 2567777777666533100000001245666666666665
Q ss_pred CC
Q 013278 273 LP 274 (446)
Q Consensus 273 ~~ 274 (446)
..
T Consensus 175 l~ 176 (361)
T 2xot_A 175 LK 176 (361)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 125
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.67 E-value=7.7e-06 Score=80.20 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=37.9
Q ss_pred ccccCcccccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEE-EecCceeeEEEe
Q 013278 206 EIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLK-IACSNLESFNIF 269 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~-i~ap~L~~L~~~ 269 (446)
++..+|+|+.|.|.+|....... +..++|++|.+..|.... .....+. ...|+|++|+++
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~--~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPD--SVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCH--HHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCCh--HHHHHHHHccCCCCcEEEEe
Confidence 78899999999998874212222 346889999888776422 1111111 146778887764
No 126
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.62 E-value=7e-06 Score=80.87 Aligned_cols=74 Identities=22% Similarity=0.140 Sum_probs=36.2
Q ss_pred HHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcc-cHHhHHHHhhcCCCCcEEEEEecC
Q 013278 308 SKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEW-TVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 308 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~-~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
...+...++|+.|.++.+.+...... .-...+....+|++|+|..+.... ....+...++.+|+|+.|++..+.
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~--~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLE--LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHH--HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHH--HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 44445566666666666544321100 000113334466666666543321 222335566667777777775544
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.59 E-value=9.3e-06 Score=70.82 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=74.0
Q ss_pred hceeeeEc--ccccCCCccCC-CCceEEEeccccccccccccC-CCcccCCCccEEEeeceEecCccccccccccchhhc
Q 013278 104 FQNGSVNE--PIKLPRSLVTC-ESLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFL 179 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~-~~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~ 179 (446)
+++|++.. ...+|. +..+ ++|++|+|+++ .+.. +....+++|++|+|+++.+.+.
T Consensus 21 L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N------~l~~~~~l~~l~~L~~L~Ls~N~l~~~-------------- 79 (176)
T 1a9n_A 21 DRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN------EIRKLDGFPLLRRLKTLLVNNNRICRI-------------- 79 (176)
T ss_dssp CEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS------CCCEECCCCCCSSCCEEECCSSCCCEE--------------
T ss_pred ceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC------CCCcccccccCCCCCEEECCCCccccc--------------
Confidence 56666654 234443 3444 49999999999 5544 4556789999999999877640
Q ss_pred ccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceE-EE-eccccceEEEeeeecCCCCCCCceEE
Q 013278 180 LSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKIL-DI-SSNSLKSLTLERIEFGGDELDNYKLK 257 (446)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l-~i-~~~~Lr~L~l~~~~~~~~~~~~~~~~ 257 (446)
-.. ++..+++|+.|+|.+|.+.....+ .+ ..++|+.|.+.+|.+.........+.
T Consensus 80 ----------------~~~-------~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~ 136 (176)
T 1a9n_A 80 ----------------GEG-------LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 136 (176)
T ss_dssp ----------------CSC-------HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHH
T ss_pred ----------------Ccc-------hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHH
Confidence 001 345667777777777765443321 11 23677777777776532000000123
Q ss_pred EecCceeeEEEecCC
Q 013278 258 IACSNLESFNIFAPL 272 (446)
Q Consensus 258 i~ap~L~~L~~~~~~ 272 (446)
...|+|+.|++.+..
T Consensus 137 ~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 137 YKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCSEETTEECC
T ss_pred HHCCccceeCCCcCC
Confidence 356778887776654
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.57 E-value=2.4e-05 Score=69.31 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=68.8
Q ss_pred cccCCCccCCCCceEEEeccccccccccccC--CC--cccCCCccEEEeeceEecCccccccccccchhhcccCcccCcc
Q 013278 113 IKLPRSLVTCESLVSLKLDFGNREHQGVLNL--PT--CVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRS 188 (446)
Q Consensus 113 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p~--~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 188 (446)
..+|..+.. +|++|+|+++ .+.. +. ...+++|++|+|+++.+.+.
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n------~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------------------- 69 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDN------ELGRISSDGLFGRLPHLVKLELKRNQLTGI----------------------- 69 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSC------CCCSBCCSCSGGGCTTCCEEECCSSCCCCB-----------------------
T ss_pred CcCccCCCC--CCCEEECCCC------cCCccCCccccccCCCCCEEECCCCCCCCc-----------------------
Confidence 345554433 7888888888 5543 22 45788888888888877651
Q ss_pred chhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEE
Q 013278 189 CKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFN 267 (446)
Q Consensus 189 ~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~ 267 (446)
... .+..++.|+.|+|.+|.+.+...-.+. .++|+.|++.+|...+. ........++|++|+
T Consensus 70 -------~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 70 -------EPN-------AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV---MPGSFEHLNSLTSLN 132 (192)
T ss_dssp -------CTT-------TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE---CTTSSTTCTTCCEEE
T ss_pred -------CHh-------HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee---CHHHhhcCCCCCEEE
Confidence 011 456677788888888765432221122 26788888887765420 011112357888888
Q ss_pred EecCCC
Q 013278 268 IFAPLL 273 (446)
Q Consensus 268 ~~~~~~ 273 (446)
++++..
T Consensus 133 L~~N~l 138 (192)
T 1w8a_A 133 LASNPF 138 (192)
T ss_dssp CTTCCB
T ss_pred eCCCCc
Confidence 888754
No 129
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.50 E-value=2.5e-05 Score=78.30 Aligned_cols=41 Identities=27% Similarity=0.489 Sum_probs=37.4
Q ss_pred CCCCCCCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhhhc
Q 013278 25 EDGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWL 65 (446)
Q Consensus 25 ~~~d~is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~lw~ 65 (446)
-..|.|+.||+||+.+||+|||.+|+++++.|||+|+++-.
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999997643
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.47 E-value=4.8e-05 Score=74.35 Aligned_cols=119 Identities=16% Similarity=0.105 Sum_probs=81.2
Q ss_pred hceeeeEc--ccccCCCcc--CCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC------cccccc
Q 013278 104 FQNGSVNE--PIKLPRSLV--TCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD------ISTTSL 170 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~--~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~------~~~~~L 170 (446)
++.|++.. ...+|...+ .+++|++|+|+++ .+.. + .+..+++|++|+|+++.+.. .++++|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N------~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN------HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCC------cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 45666654 334444333 6789999999988 5554 2 34578899999999987654 257889
Q ss_pred ccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEE----EeccccceEEEeeeec
Q 013278 171 KYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILD----ISSNSLKSLTLERIEF 246 (446)
Q Consensus 171 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~----i~~~~Lr~L~l~~~~~ 246 (446)
+.|++++ ..+.. ..+..+..+++|+.|+|.+|.+.....-. -..++|+.|++.+|.+
T Consensus 115 ~~L~L~~----------------N~i~~---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 115 EVLLLYN----------------NHIVV---VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CEEECCS----------------SCCCE---ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CEEECCC----------------CcccE---ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9999987 44332 11225678899999999999865432211 1248899999999876
Q ss_pred C
Q 013278 247 G 247 (446)
Q Consensus 247 ~ 247 (446)
.
T Consensus 176 ~ 176 (361)
T 2xot_A 176 K 176 (361)
T ss_dssp C
T ss_pred C
Confidence 4
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.43 E-value=2e-05 Score=81.98 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=21.4
Q ss_pred CceEEEeccccccccccccC-CCcccCCCccEEEeeceEecC
Q 013278 124 SLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 124 ~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~ 164 (446)
.|+.|+|+++ .+.. |....+++|+.|+|+++.+..
T Consensus 442 ~L~~L~Ls~n------~l~~lp~~~~l~~L~~L~Ls~N~l~~ 477 (567)
T 1dce_A 442 DVRVLHLAHK------DLTVLCHLEQLLLVTHLDLSHNRLRA 477 (567)
T ss_dssp TCSEEECTTS------CCSSCCCGGGGTTCCEEECCSSCCCC
T ss_pred CceEEEecCC------CCCCCcCccccccCcEeecCcccccc
Confidence 4666777766 4443 444566677777777665543
No 132
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.36 E-value=1.5e-05 Score=69.41 Aligned_cols=84 Identities=11% Similarity=0.165 Sum_probs=59.6
Q ss_pred CCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceE
Q 013278 150 SRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKIL 229 (446)
Q Consensus 150 ~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l 229 (446)
.+|+.|+|++|.+++ .++.+ + .+|++|++|+|.+|..-+...+
T Consensus 61 ~~L~~LDLs~~~Itd-----------------------------~GL~~-------L-~~~~~L~~L~L~~C~~ItD~gL 103 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS-----------------------------IGFDH-------M-EGLQYVEKIRLCKCHYIEDGCL 103 (176)
T ss_dssp CCEEEEEEESCCCCG-----------------------------GGGGG-------G-TTCSCCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCCccH-----------------------------HHHHH-------h-cCCCCCCEEEeCCCCccCHHHH
Confidence 479999999999887 77776 4 7999999999999973222222
Q ss_pred E-Ee-----ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCC
Q 013278 230 D-IS-----SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPL 272 (446)
Q Consensus 230 ~-i~-----~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 272 (446)
. +. +++|++|+|++|...+ +.++..+. .+|+|++|.++++.
T Consensus 104 ~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~-~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 104 ERLSQLENLQKSMLEMEIISCGNVT-DKGIIALH-HFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGG-GCTTCCEEEEESCT
T ss_pred HHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHh-cCCCCCEEECCCCC
Confidence 1 22 2579999999997544 23333332 46888888888874
No 133
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.27 E-value=0.00016 Score=72.02 Aligned_cols=39 Identities=36% Similarity=0.578 Sum_probs=36.5
Q ss_pred CCCCCCCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhh
Q 013278 25 EDGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYL 63 (446)
Q Consensus 25 ~~~d~is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~l 63 (446)
...|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 457899999999999999999999999999999999874
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.26 E-value=5.2e-05 Score=67.26 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=18.8
Q ss_pred CCceEEEeccccccccccccC-C-CcccCCCccEEEeeceEecC
Q 013278 123 ESLVSLKLDFGNREHQGVLNL-P-TCVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~-p-~~~~~~~L~~L~L~~~~~~~ 164 (446)
++|++|+|+++ .+.. | ....+++|++|+|+++.+..
T Consensus 31 ~~l~~L~L~~n------~i~~ip~~~~~l~~L~~L~Ls~N~i~~ 68 (193)
T 2wfh_A 31 RDVTELYLDGN------QFTLVPKELSNYKHLTLIDLSNNRIST 68 (193)
T ss_dssp TTCCEEECCSS------CCCSCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCC------cCchhHHHhhcccCCCEEECCCCcCCE
Confidence 35666666665 3332 2 23355666666666655543
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.24 E-value=8.5e-05 Score=64.57 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=20.9
Q ss_pred ccccCcccccccccccccCCcceEEEe-ccccceEEEeeeec
Q 013278 206 EIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEF 246 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~ 246 (446)
.+..+++|+.|+|.+|.+.+...-.+. .++|+.|++.+|.+
T Consensus 71 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 345666777777776654432211111 24555565555544
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.24 E-value=9.3e-05 Score=65.60 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=42.3
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecC
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~ 164 (446)
+++|++.. ...+|..+..+++|++|+|+++ .+.. + .+..+++|++|+|+++.+..
T Consensus 33 l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N------~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNN------RISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp CCEEECCSSCCCSCCGGGGGCTTCCEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCEEECCCCcCchhHHHhhcccCCCEEECCCC------cCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 56666665 4466767777899999999999 5554 2 34578999999999998765
No 137
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.16 E-value=8.8e-05 Score=73.90 Aligned_cols=38 Identities=26% Similarity=0.547 Sum_probs=35.6
Q ss_pred CCCCCCCCCHH----HHHHHhcCCChHHHHhhhhcchhhhhh
Q 013278 26 DGDRLSNLPEP----IIHHIFSFLETIDVVRASAVSRKWRYL 63 (446)
Q Consensus 26 ~~d~is~LPde----iL~~Ils~Lp~~d~~rts~lSrrWr~l 63 (446)
..|.|+.||+| |+.+||+||+.+++++++.|||+|+.+
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46889999999 999999999999999999999999964
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.15 E-value=7.2e-05 Score=66.16 Aligned_cols=103 Identities=14% Similarity=0.105 Sum_probs=64.9
Q ss_pred eEEEeccccccccccccC-CCcccCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHHHhhhccc
Q 013278 126 VSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFG 204 (446)
Q Consensus 126 ~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (446)
++++++++ .+.. |. .-+++|++|+|+++.+.. ..-..
T Consensus 11 ~~l~~s~~------~l~~ip~-~~~~~l~~L~l~~n~i~~-----------------------------~~~~~------ 48 (192)
T 1w8a_A 11 TTVDCTGR------GLKEIPR-DIPLHTTELLLNDNELGR-----------------------------ISSDG------ 48 (192)
T ss_dssp TEEECTTS------CCSSCCS-CCCTTCSEEECCSCCCCS-----------------------------BCCSC------
T ss_pred CEEEcCCC------CcCcCcc-CCCCCCCEEECCCCcCCc-----------------------------cCCcc------
Confidence 67888887 5544 43 224599999999998765 11111
Q ss_pred cccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCC
Q 013278 205 REIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLP 274 (446)
Q Consensus 205 ~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~ 274 (446)
.+..+++|+.|+|.+|.+.+...-.+. .++|+.|++.+|...+. ........++|++|+++++...
T Consensus 49 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 49 -LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI---SNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp -SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE---CSSSSTTCTTCCEEECCSSCCC
T ss_pred -ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc---CHHHhcCCCCCCEEECCCCcCC
Confidence 467789999999999986654222222 37888888888875430 0011123467777777776553
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.12 E-value=0.00012 Score=64.90 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=60.9
Q ss_pred ccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCce-eecCCCC
Q 013278 206 EIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDF-TLESLNS 283 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~-~l~~~p~ 283 (446)
.+..++.|+.|++.+|...+.. .+. .++|+.|.+.+|.... ........|+|++|.++++....+ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~----l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK----IENLDAVADTLEELWISYNQIASLSGIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECS----CSSHHHHHHHCSEEEEEEEECCCHHHHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccc----ccchhhcCCcCCEEECcCCcCCcCCccccCCC
Confidence 4567888999999998866543 222 3789999999887642 222222346777777777654322 2334455
Q ss_pred ceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhH
Q 013278 284 LQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLY 327 (446)
Q Consensus 284 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 327 (446)
|+.+++........ .....+..+++++.|.++.+.+
T Consensus 117 L~~L~l~~N~i~~~--------~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 117 LRVLYMSNNKITNW--------GEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SSEEEESEEECCCH--------HHHHHHTTTTTCSEEEECSCHH
T ss_pred CCEEECCCCcCCch--------hHHHHHhcCCCCCEEEecCCcc
Confidence 56555544321111 0012345555666666655544
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.02 E-value=0.00034 Score=60.70 Aligned_cols=99 Identities=20% Similarity=0.192 Sum_probs=56.9
Q ss_pred CCceEEEeccccccccccccC-C-C-cccCCCccEEEeeceEecC------ccccccccccchhhcccCcccCccchhhh
Q 013278 123 ESLVSLKLDFGNREHQGVLNL-P-T-CVGFSRLKSLDLQHVESLD------ISTTSLKYLTVDEFLLSEPKGLRSCKVIC 193 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~-p-~-~~~~~~L~~L~L~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 193 (446)
++|++|+++++ .+.. + . ...+++|++|+|+++.+.. ..+++|+.|++++
T Consensus 28 ~~l~~L~l~~n------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------------- 85 (177)
T 2o6r_A 28 SSATRLELESN------KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE---------------- 85 (177)
T ss_dssp TTCSEEECCSS------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS----------------
T ss_pred CCCcEEEeCCC------cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC----------------
Confidence 46777777766 4433 2 2 2356677777777666544 2466667777665
Q ss_pred hhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeec
Q 013278 194 ESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEF 246 (446)
Q Consensus 194 ~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~ 246 (446)
..+.. ..+..+..+++|+.|++.+|.+.+...-.+. .++|+.|++.+|.+
T Consensus 86 N~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQS---LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCCC---CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccc---cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 32222 1111457789999999999876543221111 25666666666554
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.96 E-value=0.00016 Score=77.60 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=47.8
Q ss_pred CCccCCCCceEEEeccccccccccccC-C-CcccCCCccEEEeeceEecC-----ccccccccccchhhcccCcccCccc
Q 013278 117 RSLVTCESLVSLKLDFGNREHQGVLNL-P-TCVGFSRLKSLDLQHVESLD-----ISTTSLKYLTVDEFLLSEPKGLRSC 189 (446)
Q Consensus 117 ~~l~~~~~L~~L~L~~~~~~~~~~l~~-p-~~~~~~~L~~L~L~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~ 189 (446)
..+..+++|+.|+|+++ .+.. | ....+++|++|+|+++.+.. .++++|++|+|++
T Consensus 218 ~~~~~l~~L~~L~Ls~n------~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~------------ 279 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNL------QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH------------ 279 (727)
T ss_dssp ----CCCCCCEEECTTS------CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT------------
T ss_pred hhhccCCCCcEEECCCC------CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC------------
Confidence 33444556666666665 3332 2 23355666666666655543 1455555555555
Q ss_pred hhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeec
Q 013278 190 KVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEF 246 (446)
Q Consensus 190 ~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~ 246 (446)
..+.. +|.-+..+++|+.|+|.+|.+..+.. .+. .++|+.|.|.+|.+
T Consensus 280 ----N~l~~----lp~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 280 ----NRLTS----LPAELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ----SCCSS----CCSSGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCC
T ss_pred ----CcCCc----cChhhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCcc
Confidence 22221 22234455556666665554332211 111 24555555555544
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.91 E-value=0.00038 Score=60.21 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=8.5
Q ss_pred cccCccccccccccccc
Q 013278 207 IDSSPLLENLKMDSCCF 223 (446)
Q Consensus 207 l~~cp~Le~L~L~~c~~ 223 (446)
+..+++|+.|+|.++.+
T Consensus 74 f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TTTCTTCCEEECCSSCC
T ss_pred ccCCCCCCEEECCCCcc
Confidence 34445555555555543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.81 E-value=0.00057 Score=59.35 Aligned_cols=13 Identities=8% Similarity=0.186 Sum_probs=6.8
Q ss_pred cCceeeEEEecCC
Q 013278 260 CSNLESFNIFAPL 272 (446)
Q Consensus 260 ap~L~~L~~~~~~ 272 (446)
.++|+.|.+.++.
T Consensus 104 l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 104 LKSLTHIYLYNNP 116 (174)
T ss_dssp CTTCSEEECCSSC
T ss_pred ccCCCEEEeCCCC
Confidence 3455555555543
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.75 E-value=0.00069 Score=70.41 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=49.0
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-C-CcccCCCccEEEeeceEecC----ccccccccccc
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-P-TCVGFSRLKSLDLQHVESLD----ISTTSLKYLTV 175 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p-~~~~~~~L~~L~L~~~~~~~----~~~~~L~~L~l 175 (446)
++.|++.. ...+|. +..+++|+.|+|+++ .+.. | ....+++|++|+|+++.+.+ +.+++|+.|++
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N------~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN------RLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSS------CCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEEC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcc------cccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEEC
Confidence 56677765 345675 677888999999888 5544 4 34578888999988887765 35778888888
Q ss_pred hh
Q 013278 176 DE 177 (446)
Q Consensus 176 ~~ 177 (446)
++
T Consensus 516 s~ 517 (567)
T 1dce_A 516 CN 517 (567)
T ss_dssp CS
T ss_pred CC
Confidence 77
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.71 E-value=0.00013 Score=71.50 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=22.0
Q ss_pred cCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEeec
Q 013278 313 GLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTT 356 (446)
Q Consensus 313 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~ 356 (446)
.+++|+.|.++.+.+..... ......++.+++|+.|++..+.
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~--~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGA--RLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHH--HHHHTTHHHHTTCSEEECCSBB
T ss_pred cCCCCCEEECCCCCCChHHH--HHHHhhcccCCcceEEECCCCc
Confidence 45667777776654432110 0001123467778888886553
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.67 E-value=0.00044 Score=74.08 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=72.2
Q ss_pred hceeeeEc--ccccCCCccCCCCceEEEeccccccccccccC-CC-cccCCCccEEEeeceEecC-----cccccccccc
Q 013278 104 FQNGSVNE--PIKLPRSLVTCESLVSLKLDFGNREHQGVLNL-PT-CVGFSRLKSLDLQHVESLD-----ISTTSLKYLT 174 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~-p~-~~~~~~L~~L~L~~~~~~~-----~~~~~L~~L~ 174 (446)
++.|++.. ...+|..++.+++|++|+|+++ .+.. |. ...+++|++|+|+++.+.. +++++|++|+
T Consensus 226 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N------~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGN------SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS------CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred CcEEECCCCCCCCCChhhcCCCCCCEEEeeCC------cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 66777765 4578888888899999999998 5554 43 4578999999999988765 3678899999
Q ss_pred chhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCC
Q 013278 175 VDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPD 225 (446)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~ 225 (446)
|++ ..+.. ++.-+..+++|+.|+|.+|.+.+
T Consensus 300 L~~----------------N~l~~----lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 300 FFD----------------NMVTT----LPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CCS----------------SCCCC----CCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCC----------------CCCCc----cChhhhcCCCccEEeCCCCccCC
Confidence 987 44332 33356788899999999887654
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.55 E-value=0.0023 Score=61.39 Aligned_cols=63 Identities=13% Similarity=0.032 Sum_probs=35.5
Q ss_pred HHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccc-eEEEEeecCcccHHhHHHHhhcCCCCcEEEEEec
Q 013278 309 KILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLK-SLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFD 382 (446)
Q Consensus 309 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~-~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~ 382 (446)
..+.++++|+.|.+... +. ......+..+.+|+ .+.+.. .-..+. ...+..|++|+.+++...
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~------~I~~~aF~~~~~L~~~l~l~~--~l~~I~--~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LK------TIGQRVFSNCGRLAGTLELPA--SVTAIE--FGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CC------EECTTTTTTCTTCCEEEEECT--TCCEEC--TTTTTTCTTEEEEEECSS
T ss_pred hhhhCCCCCCEEECCcc-cc------eehHHHhhCChhccEEEEEcc--cceEEc--hhhhhCCccCCEEEeCCC
Confidence 45677888888888764 21 11222344555666 666643 111122 344678888888887443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.52 E-value=0.0008 Score=64.98 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=33.3
Q ss_pred ccCCCccCCCCceEEEecc-ccccccccccC-C--CcccCCCccEEEeeceEecC
Q 013278 114 KLPRSLVTCESLVSLKLDF-GNREHQGVLNL-P--TCVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 114 ~lp~~l~~~~~L~~L~L~~-~~~~~~~~l~~-p--~~~~~~~L~~L~L~~~~~~~ 164 (446)
.+|. +..+.+|++|+|++ + .+.. + .+..+++|+.|+|+++.+.+
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n------~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQ------HLQHLELRDLRGLGELRNLTIVKSGLRF 70 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCS------SCCEECGGGSCSCCCCSEEECCSSCCCE
T ss_pred ccCC-CCCCCCeeEEEccCCC------CCCCcChhHhccccCCCEEECCCCccce
Confidence 4677 77788899999986 6 5544 2 24578999999999987765
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.33 E-value=0.00062 Score=58.79 Aligned_cols=80 Identities=18% Similarity=0.053 Sum_probs=53.6
Q ss_pred CceEEEeccccccccccccC-CCcccCCCccEEEeeceEecCccccccccccchhhcccCcccCccchhhhhhHHHhhhc
Q 013278 124 SLVSLKLDFGNREHQGVLNL-PTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLH 202 (446)
Q Consensus 124 ~L~~L~L~~~~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (446)
+.+.++++++ .+.. |.. -.++|++|+|+++.+.+ - ...
T Consensus 10 ~~~~l~~s~n------~l~~ip~~-~~~~l~~L~L~~N~i~~-----------------------------~-~~~---- 48 (170)
T 3g39_A 10 SGTTVDCSGK------SLASVPTG-IPTTTQVLYLYDNQITK-----------------------------L-EPG---- 48 (170)
T ss_dssp ETTEEECTTS------CCSSCCSC-CCTTCSEEECCSSCCCC-----------------------------C-CTT----
T ss_pred CCCEEEeCCC------CcCccCcc-CCCCCcEEEcCCCcCCc-----------------------------c-Chh----
Confidence 4678888888 5655 432 24899999999988765 0 112
Q ss_pred cccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecC
Q 013278 203 FGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFG 247 (446)
Q Consensus 203 ~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~ 247 (446)
.+..+++|+.|+|.+|.+.+...-.+. .++|+.|++.+|.+.
T Consensus 49 ---~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 49 ---VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp ---TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ---hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence 567789999999999986543221121 367777777777653
No 150
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.28 E-value=0.00081 Score=65.22 Aligned_cols=68 Identities=9% Similarity=0.040 Sum_probs=38.8
Q ss_pred hceeeeEc--ccccCCC-ccCCCCceEEEeccccccccccccC--C--CcccCCCccEE-EeeceEecC------ccccc
Q 013278 104 FQNGSVNE--PIKLPRS-LVTCESLVSLKLDFGNREHQGVLNL--P--TCVGFSRLKSL-DLQHVESLD------ISTTS 169 (446)
Q Consensus 104 l~~L~l~~--~~~lp~~-l~~~~~L~~L~L~~~~~~~~~~l~~--p--~~~~~~~L~~L-~L~~~~~~~------~~~~~ 169 (446)
+++|++.. -..+|.. +..+++|++|+|+++ .+.. | .+.++++|+++ .+..+.+.. ..+++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N------~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN------DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECC------TTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC------CCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 46677765 4456654 455788888888888 3322 1 23355665543 333332221 24677
Q ss_pred cccccchh
Q 013278 170 LKYLTVDE 177 (446)
Q Consensus 170 L~~L~l~~ 177 (446)
|++|++++
T Consensus 106 L~~L~l~~ 113 (350)
T 4ay9_X 106 LQYLLISN 113 (350)
T ss_dssp CCEEEEEE
T ss_pred cccccccc
Confidence 77777766
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.76 E-value=0.0077 Score=52.03 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=57.3
Q ss_pred cccCCCccCCCCceEEEeccccccccccccC--C-CcccCCCccEEEeeceEecCccccccccccchhhcccCcccCccc
Q 013278 113 IKLPRSLVTCESLVSLKLDFGNREHQGVLNL--P-TCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSC 189 (446)
Q Consensus 113 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~--p-~~~~~~~L~~L~L~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 189 (446)
..+|..+. ++|++|+|+++ .+.. | ....+++|++|+|+++.+.+.
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i------------------------ 72 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNN------QITKLEPGVFDHLVNLQQLYFNSNKLTAI------------------------ 72 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSCCCCC------------------------
T ss_pred CccCCCcC--CCCcEEEeCCC------CccccCHHHhcCCcCCCEEECCCCCCCcc------------------------
Confidence 45665543 78999999998 5554 3 345789999999999887651
Q ss_pred hhhhhhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecC
Q 013278 190 KVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFG 247 (446)
Q Consensus 190 ~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~ 247 (446)
-.. .+..+++|+.|+|.+|.+.+...-.+. .++|+.|.+.+|.+.
T Consensus 73 ------~~~-------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 73 ------PTG-------VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ------CTT-------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ------Chh-------HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 011 345566777777777665554322122 256777777776653
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.32 E-value=0.0011 Score=65.06 Aligned_cols=130 Identities=16% Similarity=0.136 Sum_probs=74.7
Q ss_pred CCCceEEEeccccccccccccCC----CcccCCCccEEEeeceEecCc-----------cccccccccchhhcccCcccC
Q 013278 122 CESLVSLKLDFGNREHQGVLNLP----TCVGFSRLKSLDLQHVESLDI-----------STTSLKYLTVDEFLLSEPKGL 186 (446)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~l~~p----~~~~~~~L~~L~L~~~~~~~~-----------~~~~L~~L~l~~~~~~~~~~~ 186 (446)
+++|++|+|++| .+... ....+++|++|+|++|.+.+. ..+.|++|++.+..+ +-
T Consensus 100 ~~~L~~L~Ls~n------~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l----~~ 169 (372)
T 3un9_A 100 RHALDEVNLASC------QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL----TA 169 (372)
T ss_dssp SSCEEEEECTTC------CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCC----HH
T ss_pred CCCceEEEecCC------CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCC----Ch
Confidence 356777777777 44331 122456777777777766541 245677777765100 00
Q ss_pred ccchhhhhhHHHhhhccccccccCcccccccccccccCCcc--eE--EE-eccccceEEEeeeecCCCCCCCceE---EE
Q 013278 187 RSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLK--IL--DI-SSNSLKSLTLERIEFGGDELDNYKL---KI 258 (446)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~--~l--~i-~~~~Lr~L~l~~~~~~~~~~~~~~~---~i 258 (446)
.++ ..+.. .+..++.|++|+|.+|.+.+.. .+ .+ ..++|+.|++.+|...+ .+...+ ..
T Consensus 170 ~~~----~~l~~-------~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~--~g~~~l~~~L~ 236 (372)
T 3un9_A 170 AGV----AVLME-------GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD--TAALALARAAR 236 (372)
T ss_dssp HHH----HHHHH-------HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH--HHHHHHHHHHH
T ss_pred HHH----HHHHH-------HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH--HHHHHHHHHHH
Confidence 000 22222 5577889999999998754211 11 11 13689999999987642 111111 12
Q ss_pred ecCceeeEEEecCCCC
Q 013278 259 ACSNLESFNIFAPLLP 274 (446)
Q Consensus 259 ~ap~L~~L~~~~~~~~ 274 (446)
..|+|++|+++++.+.
T Consensus 237 ~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 237 EHPSLELLHLYFNELS 252 (372)
T ss_dssp HCSSCCEEECTTSSCC
T ss_pred hCCCCCEEeccCCCCC
Confidence 4588999999988664
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.26 E-value=0.0077 Score=57.62 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=61.5
Q ss_pred cCceeeEEEecCCCCc---eeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCcc-EEEEechhHHHHHHHhh
Q 013278 260 CSNLESFNIFAPLLPD---FTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVK-VLKLSCTLYQFLNAILE 335 (446)
Q Consensus 260 ap~L~~L~~~~~~~~~---~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~~~~~~~~ 335 (446)
+++|+++++.++.... ..+.++++|+++.+.... ... -...+.++++|+ .+.+... +. .
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni-~~I---------~~~aF~~~~~L~~~l~l~~~-l~------~ 287 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL-KTI---------GQRVFSNCGRLAGTLELPAS-VT------A 287 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTC-CEE---------CTTTTTTCTTCCEEEEECTT-CC------E
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCccc-cee---------hHHHhhCChhccEEEEEccc-ce------E
Confidence 6899999998865432 346678889988774210 000 144578899999 9999762 21 1
Q ss_pred hcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEE
Q 013278 336 QRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTI 379 (446)
Q Consensus 336 ~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l 379 (446)
.....+..+.+|+.|.+..+... .+. ...+..|++|+.+..
T Consensus 288 I~~~aF~~c~~L~~l~l~~n~i~-~I~--~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATGDKIT-TLG--DELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTTTCTTEEEEEECSSCCC-EEC--TTTTCTTCCCCEEEC
T ss_pred EchhhhhCCccCCEEEeCCCccC-ccc--hhhhcCCcchhhhcc
Confidence 22233556677788776432211 222 345678999998863
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.69 E-value=0.008 Score=59.48 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=49.5
Q ss_pred hceeeeEc-ccccCCCccCCCCceEEEeccccccccccccCCCcccCCCccEEEeeceEecC---c--cccccccccchh
Q 013278 104 FQNGSVNE-PIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHVESLD---I--STTSLKYLTVDE 177 (446)
Q Consensus 104 l~~L~l~~-~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~p~~~~~~~L~~L~L~~~~~~~---~--~~~~L~~L~l~~ 177 (446)
++.+.+.. -..++...+...+|+.+.|...= . .+..-.+.++++|+.++|..+.+.. . .+++|+.+.+.+
T Consensus 137 L~~i~l~~~i~~I~~~aF~~~~L~~i~lp~~l-~---~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 137 IAKVVLNEGLKSIGDMAFFNSTVQEIVFPSTL-E---QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CSEEECCTTCCEECTTTTTTCCCCEEECCTTC-C---EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred ccEEEeCCCccEECHHhcCCCCceEEEeCCCc-c---EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 44554433 22333333333468888887530 0 1111234578888988887654332 1 345666666643
Q ss_pred hcccCcccCccchhhhhhHHHhhhccccccccCccccccccccc
Q 013278 178 FLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSC 221 (446)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c 221 (446)
. +.. .-...+.+|++|+.+.+...
T Consensus 213 ----------------~-l~~---I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 213 ----------------T-LKE---IGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp ----------------T-CCE---ECTTTTTTCTTCCCEECCTT
T ss_pred ----------------c-hhe---ehhhHhhCCCCCCEEecCCC
Confidence 1 111 00116778888998888753
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.61 E-value=0.011 Score=51.73 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.4
Q ss_pred ccccCccccccccccc-ccC
Q 013278 206 EIDSSPLLENLKMDSC-CFP 224 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c-~~~ 224 (446)
++..++.|++|+|.+| .+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCC
T ss_pred HHhcCCCCCEEEecCCCCCC
Confidence 8889999999999998 643
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.99 E-value=0.0062 Score=53.25 Aligned_cols=44 Identities=14% Similarity=0.006 Sum_probs=23.2
Q ss_pred CCCCceEEEeccc-cccccccccC-CCcccCCCccEEEeeceEecC
Q 013278 121 TCESLVSLKLDFG-NREHQGVLNL-PTCVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 121 ~~~~L~~L~L~~~-~~~~~~~l~~-p~~~~~~~L~~L~L~~~~~~~ 164 (446)
.+++|++|+|++| .....+.... ......++|++|+|+++.+.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~ 79 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND 79 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh
Confidence 3567777777776 3111110000 111235677777777777665
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.04 E-value=0.071 Score=49.46 Aligned_cols=77 Identities=23% Similarity=0.183 Sum_probs=48.6
Q ss_pred CCCceEEEeccccccccccccC----CC-cccCCCccEEEeeceEecCc----ccc--ccccccchhhcccCcccCccch
Q 013278 122 CESLVSLKLDFGNREHQGVLNL----PT-CVGFSRLKSLDLQHVESLDI----STT--SLKYLTVDEFLLSEPKGLRSCK 190 (446)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~l~~----p~-~~~~~~L~~L~L~~~~~~~~----~~~--~L~~L~l~~~~~~~~~~~~~~~ 190 (446)
+++|++|+|+++ .+.. |. ...+++|+.|+|+++.+.+. .+. .|+.|.+.+- | .|.
T Consensus 169 l~~L~~L~Ls~N------~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~N----p----l~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNN------RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN----S----LCD 234 (267)
T ss_dssp CTTCCEEECTTS------CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTS----T----TGG
T ss_pred CCCCCEEECCCC------CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCC----c----Ccc
Confidence 578999999998 5544 22 23789999999999988762 233 6667777651 1 121
Q ss_pred hh---hhhHHHhhhccccccccCccccccccc
Q 013278 191 VI---CESLEALKLHFGREIDSSPLLENLKMD 219 (446)
Q Consensus 191 ~~---~~~l~~~~~~~~~ll~~cp~Le~L~L~ 219 (446)
++ ...... ++..+|+|+.|+=.
T Consensus 235 ~~~~~~~y~~~-------il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 235 TFRDQSTYISA-------IRERFPKLLRLDGH 259 (267)
T ss_dssp GCSSHHHHHHH-------HHHHCTTCCEESSC
T ss_pred ccCcchhHHHH-------HHHHCcccCeECCc
Confidence 11 011223 67788988887643
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=91.85 E-value=0.092 Score=51.75 Aligned_cols=233 Identities=8% Similarity=0.072 Sum_probs=106.0
Q ss_pred hceeeeEc-ccccCCCccCCCCceEEEeccccccccccccCCCcccCCCccEEEeece--EecC---ccccccccccchh
Q 013278 104 FQNGSVNE-PIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHV--ESLD---ISTTSLKYLTVDE 177 (446)
Q Consensus 104 l~~L~l~~-~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~p~~~~~~~L~~L~L~~~--~~~~---~~~~~L~~L~l~~ 177 (446)
++++.+.. -..++...+...+|+.+.|...=. .+..-.+.+ .+|+++.|... .+.. .+|++|+.+++..
T Consensus 115 l~~i~ip~~i~~I~~~aF~~~~L~~i~l~~~i~----~I~~~aF~~-~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 115 YNEIILPNSVKSIPKDAFRNSQIAKVVLNEGLK----SIGDMAFFN-STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CSEEECCTTCCEECTTTTTTCCCSEEECCTTCC----EECTTTTTT-CCCCEEECCTTCCEECSSTTTTCTTCCEEECTT
T ss_pred ccEEEECCccCEehHhhcccCCccEEEeCCCcc----EECHHhcCC-CCceEEEeCCCccEehHHHhhCcccCCeeecCC
Confidence 34444433 223333333333799999876400 111112223 36888888641 1222 2577777777764
Q ss_pred hcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCcceEEE-eccccceEEEeeeecCCCCCCCceE
Q 013278 178 FLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDI-SSNSLKSLTLERIEFGGDELDNYKL 256 (446)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i-~~~~Lr~L~l~~~~~~~~~~~~~~~ 256 (446)
..+..+... .+. |..|+.+.|.+.. .....-.+ .+++|+.+.+..+-..-.....
T Consensus 190 ----------------n~l~~I~~~---aF~-~~~L~~l~lp~~l-~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF--- 245 (401)
T 4fdw_A 190 ----------------TKITKLPAS---TFV-YAGIEEVLLPVTL-KEIGSQAFLKTSQLKTIEIPENVSTIGQEAF--- 245 (401)
T ss_dssp ----------------SCCSEECTT---TTT-TCCCSEEECCTTC-CEECTTTTTTCTTCCCEECCTTCCEECTTTT---
T ss_pred ----------------CcceEechh---hEe-ecccCEEEeCCch-heehhhHhhCCCCCCEEecCCCccCcccccc---
Confidence 222221100 222 5677777775431 10000011 1256676666542100000000
Q ss_pred EEecCceeeEEEecCCC--CceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHh
Q 013278 257 KIACSNLESFNIFAPLL--PDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAIL 334 (446)
Q Consensus 257 ~i~ap~L~~L~~~~~~~--~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~ 334 (446)
...+|+++.+..... ....+.++++|+.+.+.......... ..+ -...+.+|++|+.+.+... +.
T Consensus 246 --~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~-~~I---~~~aF~~c~~L~~l~l~~~-i~------ 312 (401)
T 4fdw_A 246 --RESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE-AMI---HPYCLEGCPKLARFEIPES-IR------ 312 (401)
T ss_dssp --TTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT-CEE---CTTTTTTCTTCCEECCCTT-CC------
T ss_pred --ccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcc-cEE---CHHHhhCCccCCeEEeCCc-eE------
Confidence 113566666643321 12345567788877764321000000 000 0345567778887777632 11
Q ss_pred hhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEecC
Q 013278 335 EQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDS 383 (446)
Q Consensus 335 ~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~~ 383 (446)
......+..+.+|+.+.+...- ..+. ...+..| +|+++.+....
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~l--~~I~--~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPANV--TQIN--FSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTTC--CEEC--TTSSSSS-CCCEEEECCSS
T ss_pred EEhhhhhcCCCCccEEEECccc--cEEc--HHhCCCC-CCCEEEEcCCC
Confidence 1122224455667777773211 1111 2335567 88888887654
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=91.46 E-value=0.026 Score=54.17 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=46.8
Q ss_pred CCcccCCCccEEEeec-eEecC------ccccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccc
Q 013278 144 PTCVGFSRLKSLDLQH-VESLD------ISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENL 216 (446)
Q Consensus 144 p~~~~~~~L~~L~L~~-~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L 216 (446)
|....+++|++|+|++ +.+.. .++++|+.|+|+. ..+.. ..+..+..+++|+.|
T Consensus 25 p~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~----------------N~l~~---~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK----------------SGLRF---VAPDAFHFTPRLSRL 85 (347)
T ss_dssp TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS----------------SCCCE---ECTTGGGSCSCCCEE
T ss_pred CCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC----------------Cccce---eCHHHhcCCcCCCEE
Confidence 4444678999999996 76654 2466666666665 33222 222245566666777
Q ss_pred cccccccCCcceEEEeccccceEEEeeeec
Q 013278 217 KMDSCCFPDLKILDISSNSLKSLTLERIEF 246 (446)
Q Consensus 217 ~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~ 246 (446)
+|.+|.+.+...-.+...+|+.|.+.+|.+
T Consensus 86 ~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred eCCCCccceeCHHHcccCCceEEEeeCCCc
Confidence 776666443221111122366666666554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=87.52 E-value=0.095 Score=48.57 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=12.6
Q ss_pred ccccCcccccccccccccCC
Q 013278 206 EIDSSPLLENLKMDSCCFPD 225 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~ 225 (446)
++..+|+|+.|+|.+|.+.+
T Consensus 191 ~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 191 IVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHHHSTTCCEEECTTSCCCS
T ss_pred HHhhCCCCCEEECCCCccCC
Confidence 45566777777777666543
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=84.16 E-value=0.17 Score=49.50 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=29.9
Q ss_pred cccCCCccEEEeeceE--ecC---ccccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccc
Q 013278 146 CVGFSRLKSLDLQHVE--SLD---ISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDS 220 (446)
Q Consensus 146 ~~~~~~L~~L~L~~~~--~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~ 220 (446)
+..+++|+.+.+.... +.. .+|++|+.+.+.+ . +..+ -...+..|+.|+.+.+..
T Consensus 158 F~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~----------------~-~~~I---~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 158 FATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPR----------------N-LKII---RDYCFAECILLENMEFPN 217 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCT----------------T-CCEE---CTTTTTTCTTCCBCCCCT
T ss_pred hcccCCCcEEecCCccceeccccccCCCCceEEEcCC----------------C-ceEe---CchhhccccccceeecCC
Confidence 3456677777774321 222 1467777776643 1 1100 001566788888777765
Q ss_pred c
Q 013278 221 C 221 (446)
Q Consensus 221 c 221 (446)
.
T Consensus 218 ~ 218 (394)
T 4fs7_A 218 S 218 (394)
T ss_dssp T
T ss_pred C
Confidence 4
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=53.92 E-value=4.1 Score=39.40 Aligned_cols=140 Identities=13% Similarity=0.117 Sum_probs=67.2
Q ss_pred ccCCCCceEEEeccccccccccccCCCcccCCCccEEEeeceEecCc---cccccccccchhhcccCcccCccchhhhhh
Q 013278 119 LVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHVESLDI---STTSLKYLTVDEFLLSEPKGLRSCKVICES 195 (446)
Q Consensus 119 l~~~~~L~~L~L~~~~~~~~~~l~~p~~~~~~~L~~L~L~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 195 (446)
+..|..|+.+.+..... .+....+..+..|+.+.+....+.+. .|++|+.+.+.+. + ..
T Consensus 249 f~~~~~l~~~~~~~~~~----~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-------i-------~~ 310 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKL----RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-------V-------KF 310 (394)
T ss_dssp TTTCSSCCEEEECCTTC----EECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-------C-------CE
T ss_pred ccccccceeEEcCCCcc----eeeccccccccccceeccCceeeccccccccccccccccccc-------c-------ce
Confidence 34578888888876510 11112334566777777666655442 4666666665430 0 11
Q ss_pred HHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCC-
Q 013278 196 LEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLL- 273 (446)
Q Consensus 196 l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~- 273 (446)
+.. ..+.+|.+|+.++|.+.. .....-.+. +.+|+.+.+..+-. . -.......+++|+++.+.....
T Consensus 311 I~~------~aF~~c~~L~~i~lp~~v-~~I~~~aF~~c~~L~~i~lp~~l~-~---I~~~aF~~C~~L~~i~lp~~~~~ 379 (394)
T 4fs7_A 311 IGE------EAFESCTSLVSIDLPYLV-EEIGKRSFRGCTSLSNINFPLSLR-K---IGANAFQGCINLKKVELPKRLEQ 379 (394)
T ss_dssp ECT------TTTTTCTTCCEECCCTTC-CEECTTTTTTCTTCCEECCCTTCC-E---ECTTTBTTCTTCCEEEEEGGGGG
T ss_pred ech------hhhcCCCCCCEEEeCCcc-cEEhHHhccCCCCCCEEEECcccc-E---ehHHHhhCCCCCCEEEECCCCEE
Confidence 110 145677777777774321 100000111 24566665543210 0 0001123467777777755321
Q ss_pred CceeecCCCCceEE
Q 013278 274 PDFTLESLNSLQNA 287 (446)
Q Consensus 274 ~~~~l~~~p~L~~l 287 (446)
....+.++++|+.+
T Consensus 380 ~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 380 YRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGBCTTCEEEEE
T ss_pred hhheecCCCCCcEE
Confidence 12345566666654
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=52.09 E-value=19 Score=34.48 Aligned_cols=53 Identities=21% Similarity=0.331 Sum_probs=25.4
Q ss_pred cCCCCceEEEeccccccccccccCCCcccCCCccEEEeece--EecC---ccccccccccch
Q 013278 120 VTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHV--ESLD---ISTTSLKYLTVD 176 (446)
Q Consensus 120 ~~~~~L~~L~L~~~~~~~~~~l~~p~~~~~~~L~~L~L~~~--~~~~---~~~~~L~~L~l~ 176 (446)
..|.+|+.+.+...-. .+..-.+.++.+|+++.|... .+.+ .+|++|+.+.+-
T Consensus 285 ~~c~~L~~i~l~~~i~----~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 285 MNCPALQDIEFSSRIT----ELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTCTTCCEEECCTTCC----EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEC
T ss_pred ccccccccccCCCccc----ccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEEC
Confidence 3466777776653200 111122345666666666431 1222 146666666663
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=46.07 E-value=6 Score=34.48 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=8.4
Q ss_pred CCccEEEeeceEecC
Q 013278 150 SRLKSLDLQHVESLD 164 (446)
Q Consensus 150 ~~L~~L~L~~~~~~~ 164 (446)
+.|++|+|+++.+.+
T Consensus 98 ~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 98 PSLRVLNVESNFLTP 112 (197)
T ss_dssp SSCCEEECCSSBCCH
T ss_pred CccCeEecCCCcCCH
Confidence 455566665555554
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=43.44 E-value=15 Score=29.31 Aligned_cols=36 Identities=17% Similarity=0.025 Sum_probs=26.9
Q ss_pred CCceEEEeccccccccccccC-C--CcccCCCccEEEeeceEecC
Q 013278 123 ESLVSLKLDFGNREHQGVLNL-P--TCVGFSRLKSLDLQHVESLD 164 (446)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~l~~-p--~~~~~~~L~~L~L~~~~~~~ 164 (446)
++|++|+|+++ .+.. | .+..+++|++|+|.++.+.=
T Consensus 31 ~~l~~L~Ls~N------~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 31 VDTTELVLTGN------NLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TTCSEEECTTS------CCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred cCCCEEECCCC------cCCccChhhhhhccccCEEEecCCCeec
Confidence 36899999998 6654 2 24578899999998887653
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=40.89 E-value=3.1 Score=36.38 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=23.7
Q ss_pred ccccCcccccccccccccCCcceEEE-----eccccceEEEeeeecC
Q 013278 206 EIDSSPLLENLKMDSCCFPDLKILDI-----SSNSLKSLTLERIEFG 247 (446)
Q Consensus 206 ll~~cp~Le~L~L~~c~~~~~~~l~i-----~~~~Lr~L~l~~~~~~ 247 (446)
.+..-..|+.|+|.+|.+.+.....+ ...+|++|.+.+|...
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455678888888776542211111 2356777777776653
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=38.14 E-value=20 Score=34.27 Aligned_cols=102 Identities=16% Similarity=0.246 Sum_probs=61.7
Q ss_pred ccCCCCceEEEeccccccccccccCCCcccCCCccEEEeece--EecC---ccccccccccchhhcccCcccCccchhhh
Q 013278 119 LVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHV--ESLD---ISTTSLKYLTVDEFLLSEPKGLRSCKVIC 193 (446)
Q Consensus 119 l~~~~~L~~L~L~~~~~~~~~~l~~p~~~~~~~L~~L~L~~~--~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 193 (446)
+..|..|+.+.+...-. .+..-.+.++++|+.+.+... .+.+ .+|++|+.+.+.+ ++
T Consensus 261 F~~c~~L~~i~lp~~~~----~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~-------~v------- 322 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV----SIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE-------GI------- 322 (394)
T ss_dssp TTTCSSCCEEECCTTCC----EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT-------TC-------
T ss_pred eeecccccEEecccccc----eecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCC-------cc-------
Confidence 44689999999875510 111123457889999998542 2222 2688999988854 00
Q ss_pred hhHHHhhhccccccccCcccccccccccccCCcceEEEe-ccccceEEEeeee
Q 013278 194 ESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDIS-SNSLKSLTLERIE 245 (446)
Q Consensus 194 ~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~~~l~i~-~~~Lr~L~l~~~~ 245 (446)
..+.. ..+.+|.+|+.+.|-... .....-.+. +.+|+.+.+.++.
T Consensus 323 ~~I~~------~aF~~C~~L~~i~ip~sv-~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 323 TQILD------DAFAGCEQLERIAIPSSV-TKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEECT------TTTTTCTTCCEEEECTTC-CBCCGGGGTTCTTCCEEEESSCH
T ss_pred cEehH------hHhhCCCCCCEEEECccc-CEEhHhHhhCCCCCCEEEECCce
Confidence 11111 167889999999996542 222222222 4788888887654
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=34.41 E-value=21 Score=33.86 Aligned_cols=13 Identities=8% Similarity=0.209 Sum_probs=7.1
Q ss_pred ccccCcccccccc
Q 013278 206 EIDSSPLLENLKM 218 (446)
Q Consensus 206 ll~~cp~Le~L~L 218 (446)
.+.+|.+|+.+.+
T Consensus 328 aF~~C~~L~~i~i 340 (379)
T 4h09_A 328 AFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCCCCC
T ss_pred HhhCCCCCCEEEE
Confidence 3455555555555
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=26.67 E-value=36 Score=26.99 Aligned_cols=15 Identities=13% Similarity=-0.077 Sum_probs=12.8
Q ss_pred CCccEEEeeceEecC
Q 013278 150 SRLKSLDLQHVESLD 164 (446)
Q Consensus 150 ~~L~~L~L~~~~~~~ 164 (446)
++|++|+|+++.+..
T Consensus 31 ~~l~~L~Ls~N~l~~ 45 (130)
T 3rfe_A 31 VDTTELVLTGNNLTA 45 (130)
T ss_dssp TTCSEEECTTSCCSS
T ss_pred cCCCEEECCCCcCCc
Confidence 479999999998876
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=25.07 E-value=36 Score=32.15 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=6.8
Q ss_pred ccccCcccccccc
Q 013278 206 EIDSSPLLENLKM 218 (446)
Q Consensus 206 ll~~cp~Le~L~L 218 (446)
.+.+|.+|+.+.|
T Consensus 305 aF~~c~~L~~i~l 317 (379)
T 4h09_A 305 VFMDCVKLSSVTL 317 (379)
T ss_dssp TTTTCTTCCEEEC
T ss_pred hhcCCCCCCEEEc
Confidence 3445555555555
No 171
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=21.83 E-value=53 Score=21.03 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCHHHHHHHhcC
Q 013278 24 GEDGDRLSNLPEPIIHHIFSF 44 (446)
Q Consensus 24 ~~~~d~is~LPdeiL~~Ils~ 44 (446)
+-+.+-++.||.||-..|+|-
T Consensus 15 ~VD~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 15 GVDQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp TCCGGGTTTSCHHHHHHHTTC
T ss_pred CCCHHHHHHCcHHHHHHHHhc
Confidence 334556888998888888874
Done!