BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013280
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R52|A Chain A, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
pdb|1R52|B Chain B, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
pdb|1R52|C Chain C, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
pdb|1R52|D Chain D, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
pdb|1R53|A Chain A, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
Length = 382
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 187/372 (50%), Positives = 236/372 (63%), Gaps = 13/372 (3%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
S FG FRVTT+GESH VGCI+DG PP + L+EAD+Q L RR RPGQS+++TP
Sbjct: 2 STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRR-----RPGQSKLSTP 56
Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXX 174
R E D +I SG G T GTPI + + N DQR HDYS+M RPSHAD TY KY
Sbjct: 57 RDEKDRVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIK 116
Query: 175 XXXXXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEM---- 230
ARETIGRVA GA+A+K L Q + EI+A+V+Q + + D D E
Sbjct: 117 ASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLL 176
Query: 231 --LTLDQVES-NIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSPVFD 287
+T ++V+S +RCPD A M+ I+ TC+VRN P GLG P FD
Sbjct: 177 NTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFD 236
Query: 288 KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTD-EFGNIRTRTNRSGGIQG 346
KLEA LA AM+S+PA+KGFE+GSGF G + GS+HND FY + E +RT+TN SGG+QG
Sbjct: 237 KLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQG 296
Query: 347 GISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVAL 406
GISNGE I + FK +TI ++Q T T + +E L A+GRHDP V PRA+P+VEAM AL
Sbjct: 297 GISNGENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTAL 356
Query: 407 VLMDQLMAQHAQ 418
VL D L+ Q A+
Sbjct: 357 VLADALLIQKAR 368
>pdb|1UM0|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|B Chain B, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|C Chain C, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|D Chain D, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UMF|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1UMF|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1UMF|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1UMF|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 365
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 131/369 (35%), Positives = 192/369 (52%), Gaps = 32/369 (8%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
+ G + R+TTFGESHG +G ++DG P I + A ++ ++ RR + G++ TP
Sbjct: 2 NTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRR-----QGGRNVFITP 56
Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXX 174
RKE D +I SGV E +TGTPI + N R DY + +RPSHAD TY KY
Sbjct: 57 RKEDDKVEITSGVFEDFSTGTPIGFLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIR 116
Query: 175 XXXXXXXXXARETIGRVAPGAVAKKILKQFAGT------EILAYVSQAHNVVLPEDVVDH 228
ARE+ RVA GA AK +L++ EI ++ ++ +
Sbjct: 117 DFRGGGRSSARESAIRVAAGAFAKMLLREIGIVCESGIIEIGGIKAKNYDF---NHALKS 173
Query: 229 EMLTLDQVESNIVRCPDPEYAEK--MIAAIDAXXXXXXXXXXXXTCIVRN--CPRGLGSP 284
E+ LD+ + E A+K + AI I N P GLG
Sbjct: 174 EIFALDE---------EQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQG 224
Query: 285 VFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGI 344
++ KL+A++A+AMM L K E+G G + L GSE+ND D+ G + +NRSGG+
Sbjct: 225 LYAKLDAKIAEAMMGLNGVKAVEIGKGVESSLLKGSEYND--LMDQKGFL---SNRSGGV 279
Query: 345 QGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMV 404
GG+SNGE I +R+ FKPT +I + Q T+ E E + +GRHDPC+ R + E+++
Sbjct: 280 LGGMSNGEEIIVRVHFKPTPSIFQPQRTIDINGNECECLLKGRHDPCIAIRGSVVCESLL 339
Query: 405 ALVLMDQLM 413
ALVL D ++
Sbjct: 340 ALVLADMVL 348
>pdb|1SQ1|A Chain A, Crystal Structure Of The Chorismate Synthase From
Campylobacter Jejuni, Northeast Structural Genomics
Target Br19
Length = 370
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/359 (35%), Positives = 178/359 (49%), Gaps = 15/359 (4%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
+ FGT + T+FGESHG VGCIIDG P + E +Q +LD+R G S+ TP
Sbjct: 2 NTFGTRLKFTSFGESHGVAVGCIIDGXPAGVKFDEEFLQNELDKR------KGGSKFATP 55
Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXX 174
RKE+D ++ SGV EG TTG PI + V N + DY + +RP+HAD TY KY
Sbjct: 56 RKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIR 115
Query: 175 XXXXXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLD 234
ARE++ RVA GAVA +L++F + S V + E +
Sbjct: 116 DHRGGGRSSARESVARVAGGAVAAXLLREFD----ICVQSGVFGVGTFVSNLKEEEFDFE 171
Query: 235 QVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSPVFDKLEAELA 294
+ + + C DP+ I V GLG ++DKL+++LA
Sbjct: 172 FAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGXLIGLGEVLYDKLDSKLA 231
Query: 295 KAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEII 354
A+ + A K E+G G + GS +ND +F +N SGGI GGISNGE +
Sbjct: 232 HALXGINAVKAVEIGEGINASKXRGSCNNDALKDGKF-----LSNHSGGILGGISNGENL 286
Query: 355 NMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLM 413
++ FKPT +I KQ ++ + + +GRHDPCV R + A V LVL D L+
Sbjct: 287 ILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGSVVASAXVRLVLADCLL 345
>pdb|1Q1L|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 401
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 124/382 (32%), Positives = 178/382 (46%), Gaps = 37/382 (9%)
Query: 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETD 119
Y R T GESHG G+ I++G P +PLSE ++ +L RR R G+ +I E D
Sbjct: 8 YLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKI-----EKD 62
Query: 120 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAY------------RPSHADATY 167
T +I SGV G T G+PI +F+ N D +M++ RP HAD +
Sbjct: 63 TAEILSGVRFGKTLGSPIALFIRNRDWENWK-EKMAIEGEPSPSVVPFTRPRPGHADLSG 121
Query: 168 DMKYXXX-XXXXXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYV-----------SQ 215
+KY ARET RVA GAV KK L +F G +I ++V
Sbjct: 122 GIKYNQRDLRNILERASARETAARVAVGAVCKKFLSEF-GIKIGSFVVSIGQKEVEELKD 180
Query: 216 AHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVR 275
PE ++ + ++ E + +R P PE E+ ID
Sbjct: 181 KSYFANPEKLLSYH----EKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFAL 236
Query: 276 NCPRGLGSPV-FDK-LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGN 333
N P GLGS + +D+ ++ +A+A S+ A KG E+G GF GS+ +DE E
Sbjct: 237 NVPPGLGSHIQWDRRIDGRIAQAXXSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKG 296
Query: 334 IRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVV 393
+N GG +GGI+NG I +R+A KP T+ +V E KE + R D V
Sbjct: 297 YFRHSNNLGGTEGGITNGXPIVVRVAXKPIPTLKNPLRSVDIETKEEMKAGKERTDIVAV 356
Query: 394 PRAVPMVEAMVALVLMDQLMAQ 415
P A + EA +A+VL D L+ +
Sbjct: 357 PAASVVGEAXLAIVLADALLEK 378
>pdb|1ZTB|A Chain A, Crystal Structure Of Chorismate Synthase From
Mycobacterium Tuberculosis
pdb|2G85|A Chain A, Crystal Structure Of Chorismate Synthase From
Mycobacterium Tuberculosis At 2.22 Angstrons Of
Resolution
Length = 401
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/368 (32%), Positives = 171/368 (46%), Gaps = 27/368 (7%)
Query: 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDT 120
R T GESHG + +++G + ++ AD+ L RR R G R E D
Sbjct: 2 LRWITAGESHGRALVAVVEGMVAGVHVTSADIADQLARR-----RLGYGRGARMTFERDA 56
Query: 121 CKIYSGVSEGVTTGTPIHVFVPNTDQRGH---------DYSEMS-VAY-------RPSHA 163
+ SG+ G T G PI + + NT+ D +E++ VA RP HA
Sbjct: 57 VTVLSGIRHGSTLGGPIAIEIGNTEWPKWETVMAADPVDPAELADVARNAPLTRPRPGHA 116
Query: 164 DATYDMKYXXXXXX-XXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLP 222
D +KY ARET RVA G VA+ L+Q G E+L++V P
Sbjct: 117 DYAGMLKYGFDDARPVLERASARETAARVAAGTVARAFLRQALGVEVLSHVISI-GASAP 175
Query: 223 EDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLG 282
+ L ++++ VR D MIA I+A + P GLG
Sbjct: 176 YEGPPPRAEDLPAIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGLG 235
Query: 283 SPVFD--KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 340
S +L+++LA A+M + A KG E+G GF GS +DE Y G +R+ TNR
Sbjct: 236 SFTSGDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDGVVRS-TNR 294
Query: 341 SGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMV 400
+GG++GG++NG+ + +R A KP ST+ R TV + + R D C VP A +V
Sbjct: 295 AGGLEGGMTNGQPLRVRAAMKPISTVPRALATVDLATGDEAVAIHQRSDVCAVPAAGVVV 354
Query: 401 EAMVALVL 408
E MVALVL
Sbjct: 355 ETMVALVL 362
>pdb|2O11|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase
pdb|2O12|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase In Complex
With Fmn
pdb|2QHF|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase In Complex
With Nca
Length = 407
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/368 (32%), Positives = 171/368 (46%), Gaps = 27/368 (7%)
Query: 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDT 120
R T GESHG + +++G + ++ AD+ L RR R G R E D
Sbjct: 2 LRWITAGESHGRALVAVVEGMVAGVHVTSADIADQLARR-----RLGYGRGARMTFERDA 56
Query: 121 CKIYSGVSEGVTTGTPIHVFVPNTDQRGH---------DYSEMS-VAY-------RPSHA 163
+ SG+ G T G PI + + NT+ D +E++ VA RP HA
Sbjct: 57 VTVLSGIRHGSTLGGPIAIEIGNTEWPKWETVMAADPVDPAELADVARNAPLTRPRPGHA 116
Query: 164 DATYDMKYXXXXXX-XXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLP 222
D +KY ARET RVA G VA+ L+Q G E+L++V P
Sbjct: 117 DYAGMLKYGFDDARPVLERASARETAARVAAGTVARAFLRQALGVEVLSHVISI-GASAP 175
Query: 223 EDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLG 282
+ L ++++ VR D MIA I+A + P GLG
Sbjct: 176 YEGPPPRAEDLPAIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGLG 235
Query: 283 SPVFD--KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 340
S +L+++LA A+M + A KG E+G GF GS +DE Y G +R+ TNR
Sbjct: 236 SFTSGDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDGVVRS-TNR 294
Query: 341 SGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMV 400
+GG++GG++NG+ + +R A KP ST+ R TV + + R D C VP A +V
Sbjct: 295 AGGLEGGMTNGQPLRVRAAMKPISTVPRALATVDLATGDEAVAIHQRSDVCAVPAAGVVV 354
Query: 401 EAMVALVL 408
E MVALVL
Sbjct: 355 ETMVALVL 362
>pdb|4ECD|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of
Bifidobacterium Longum Chorismate Synthase
pdb|4ECD|B Chain B, 2.5 Angstrom Resolution Crystal Structure Of
Bifidobacterium Longum Chorismate Synthase
Length = 398
Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 166/367 (45%), Gaps = 24/367 (6%)
Query: 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDT 120
R T GESHG + +I+G P + +S D+ L RR R G R + E D
Sbjct: 5 LRWQTAGESHGEALVAMIEGLPAGVRISTDDIVSALARR-----RLGYGRGARMKFEQDK 59
Query: 121 CKIYSGVSEGVTTGTPIHVFVPNT-----------DQRGHDYSEMSVAY-----RPSHAD 164
++ +GV G+T G+P+ + + NT D HD RP HAD
Sbjct: 60 VRLLTGVRHGLTLGSPVAIEIANTEWPKWTEVMSADALDHDLPREGRNAPLSRPRPGHAD 119
Query: 165 ATYDMKYXXXXXX-XXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPE 223
T KY ARET RVA G VAK+ L Q G +A+V V
Sbjct: 120 LTGMRKYGFDDARPVLERSSARETASRVALGEVAKQFLDQAFGIRTVAHVVALGGVQTNP 179
Query: 224 DVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGS 283
D+ L+ ++++ VR D E ++I I+ + P G+G+
Sbjct: 180 DLPLPTPDDLEALDASPVRTLDKEAEVRIIERINEAKKAADTLGGVIEVLAYGVPAGIGT 239
Query: 284 PVFD--KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRS 341
V +L+A LA A+M + A KG E+G GF GS+ +DE + G I +NR+
Sbjct: 240 YVESDRRLDAALASAIMGIQAFKGVEIGDGFLAASRPGSQAHDEIVVNADGRIDRLSNRA 299
Query: 342 GGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVE 401
GGI+GG+SNG++I +R A KP +I + TV E+ R D VP A + E
Sbjct: 300 GGIEGGMSNGQVIRVRGAMKPIPSIPKALRTVDVLTGESAQAINQRSDSTAVPAASVVAE 359
Query: 402 AMVALVL 408
AMV L L
Sbjct: 360 AMVRLTL 366
>pdb|1QXO|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With
Oxidized Fmn And Epsp
pdb|1QXO|B Chain B, Crystal Structure Of Chorismate Synthase Complexed With
Oxidized Fmn And Epsp
pdb|1QXO|C Chain C, Crystal Structure Of Chorismate Synthase Complexed With
Oxidized Fmn And Epsp
pdb|1QXO|D Chain D, Crystal Structure Of Chorismate Synthase Complexed With
Oxidized Fmn And Epsp
Length = 388
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 182/380 (47%), Gaps = 30/380 (7%)
Query: 62 RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTC 121
R T GESHG + II+G P +PL+ D+ DL RR R G+ +I E D
Sbjct: 2 RYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRXKI-----ENDQV 56
Query: 122 KIYSGVSEGVTTGTPIHVFVPNTD-QRGHDY-----------SEMSVAY-RPSHADATYD 168
SGV G TTG PI V N D Q+ D S+ + + RP HAD
Sbjct: 57 VFTSGVRHGKTTGAPITXDVINKDHQKWLDIXSAEDIEDRLKSKRKITHPRPGHADLVGG 116
Query: 169 MKYX-XXXXXXXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVS--QAHNVVLPEDV 225
+KY ARET RVA GAVAK++L + EI +V + +PE++
Sbjct: 117 IKYRFDDLRNSLERSSARETTXRVAVGAVAKRLLAEL-DXEIANHVVVFGGKEIDVPENL 175
Query: 226 VDHEMLT-LDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSP 284
E+ Q E +IV + E +++ ID +V P GLGS
Sbjct: 176 TVAEIKQRAAQSEVSIV---NQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSY 232
Query: 285 V-FD-KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDE-FYTDEFGNIRTRTNRS 341
V +D KL+A LA+A++S+ A KG E G GF + GS+ DE ++ E G R RTN
Sbjct: 233 VQWDRKLDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVXDEILWSKEDGYTR-RTNNL 291
Query: 342 GGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVE 401
GG +GG +NG+ I +R KP T+ + +V E E R DP +P A + E
Sbjct: 292 GGFEGGXTNGQPIVVRGVXKPIPTLYKPLXSVDIETHEPYKATVERSDPTALPAAGXVXE 351
Query: 402 AMVALVLMDQLMAQHAQCHL 421
A+VA VL +++ + + +L
Sbjct: 352 AVVATVLAQEILEKFSSDNL 371
>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi
Length = 456
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 16 TDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFG 67
T G+ LP++ ++ P+ +QI + + TP L V+ G F V F
Sbjct: 294 TTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFA 345
>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal
Permeability-Increasing Protein
Length = 456
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 16 TDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFG 67
T G+ LP++ ++ P+ +QI + + TP L V+ G F V F
Sbjct: 294 TTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFA 345
>pdb|3BUT|A Chain A, Crystal Structure Of Protein Af_0446 From Archaeoglobus
Fulgidus
Length = 136
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 348 ISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIAR 385
I+NGE +R+A KPT IG + V +E+E +
Sbjct: 88 IANGEKTKIRVAIKPTIEIGGRDVEVPVFLRESEFTTK 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,462,989
Number of Sequences: 62578
Number of extensions: 493586
Number of successful extensions: 960
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 16
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)