Query 013280
Match_columns 446
No_of_seqs 197 out of 1039
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 02:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02754 chorismate synthase 100.0 6E-155 1E-159 1177.9 40.5 403 29-436 1-403 (413)
2 COG0082 AroC Chorismate syntha 100.0 3E-152 8E-157 1137.8 35.6 363 53-429 1-366 (369)
3 PF01264 Chorismate_synt: Chor 100.0 1E-146 2E-151 1101.4 25.0 345 61-414 1-346 (346)
4 TIGR00033 aroC chorismate synt 100.0 7E-145 1E-149 1089.9 37.6 351 61-419 1-351 (351)
5 PRK12463 chorismate synthase; 100.0 1E-144 3E-149 1098.9 36.1 363 61-430 1-382 (390)
6 PRK05382 chorismate synthase; 100.0 5E-143 1E-147 1079.0 35.1 355 59-429 1-357 (359)
7 cd07304 Chorismate_synthase Ch 100.0 6E-143 1E-147 1073.8 35.5 343 61-411 1-344 (344)
8 KOG4492 Chorismate synthase [A 100.0 1E-106 3E-111 786.7 22.7 365 55-424 2-366 (368)
9 KOG4492 Chorismate synthase [A 99.6 3.1E-17 6.7E-22 161.8 -6.8 176 234-410 192-368 (368)
10 cd07304 Chorismate_synthase Ch 81.7 2.3 5E-05 44.5 5.2 84 60-144 190-294 (344)
11 PF01264 Chorismate_synt: Chor 73.9 0.98 2.1E-05 47.2 -0.2 83 61-144 189-292 (346)
12 COG0082 AroC Chorismate syntha 72.9 5.3 0.00012 42.2 4.8 137 62-204 196-353 (369)
13 PF08712 Nfu_N: Scaffold prote 67.3 3.9 8.5E-05 34.5 2.1 30 289-318 35-64 (87)
14 TIGR00033 aroC chorismate synt 56.2 12 0.00027 39.3 3.8 84 61-144 190-293 (351)
15 PRK05382 chorismate synthase; 52.9 26 0.00056 37.1 5.5 129 262-417 8-142 (359)
16 PLN02948 phosphoribosylaminoim 52.5 26 0.00057 38.8 5.8 66 249-317 451-533 (577)
17 TIGR01162 purE phosphoribosyla 49.0 50 0.0011 31.2 6.2 87 197-316 17-120 (156)
18 PRK12463 chorismate synthase; 45.7 56 0.0012 35.1 6.7 71 262-359 6-77 (390)
19 TIGR02725 phenyl_P_gamma pheny 28.4 48 0.001 27.8 2.3 45 267-311 17-61 (84)
20 PF00220 Hormone_4: Neurohypop 27.6 23 0.00049 19.0 0.2 9 272-280 1-9 (9)
21 PRK09536 btuD corrinoid ABC tr 24.4 96 0.0021 33.0 4.3 79 194-288 280-358 (402)
22 COG0250 NusG Transcription ant 21.4 2.1E+02 0.0046 27.3 5.6 54 73-131 84-140 (178)
23 smart00609 VIT Vault protein I 20.7 1.4E+02 0.0029 27.1 3.9 30 250-280 81-119 (130)
24 smart00739 KOW KOW (Kyprides, 20.7 85 0.0018 20.0 2.0 16 116-131 3-18 (28)
No 1
>PLN02754 chorismate synthase
Probab=100.00 E-value=5.6e-155 Score=1177.95 Aligned_cols=403 Identities=87% Similarity=1.314 Sum_probs=380.5
Q ss_pred ccCCCCceeEeecccCcchhhcccccccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCC
Q 013280 29 RQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQ 108 (446)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~m~ntfG~~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~ 108 (446)
|.+++.+|+++++.+.+++++++|++|+||++|||||||||||++||||||||||||+||+|+||+||+| |||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~~L~R-----RrpG~ 75 (413)
T PLN02754 1 RRLSSASVQISLRSRTRKNLQIQAAGSTFGTYFRVTTFGESHGGGVGCVIDGCPPRIPLTEEDMQFDLDR-----RRPGQ 75 (413)
T ss_pred CCccccccceecccccccceeeecccCccccceEEEEEecCCCCeeEEEEcccCCCCEeCHHHHHHHHhc-----cCCCC
Confidence 4577889999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CCCCCCCCCCCeEEEEecccCCcccCCcEEEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHH
Q 013280 109 SRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETI 188 (446)
Q Consensus 109 ~r~~t~R~E~D~veIlSGv~~G~TtGtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa 188 (446)
++++|||+|.|+|+||||||+|+|||+||+++|+|+||+||||+++++.||||||||||++|||+|||||||||||||||
T Consensus 76 ~~~~t~R~E~D~veIlSGv~~G~TtGtPIa~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rd~rGGgRsSaReTa 155 (413)
T PLN02754 76 SRITTPRKETDTCEILSGVSEGMTLGTPIAVFVPNTDQRGQDYSEMSVAYRPSHADATYDFKYGVRAVQGGGRSSARETI 155 (413)
T ss_pred CCCCcCCCCCCceEEeecccCCCcCCCCeEEEEEcCCCCCCChHHhcCCCCCCCcchhHHHhcCCcccCCccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCcccc
Q 013280 189 GRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGG 268 (446)
Q Consensus 189 ~rVaAGaIAk~~L~~~~GI~I~s~V~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGG 268 (446)
+||||||||||||++.+||+|.|||++||+|+.+++..+....++++++++++||||++++++|+++|++||++||||||
T Consensus 156 ~rVaAGaiAk~lL~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~~rc~d~~~~~~m~~~I~~ak~~GDSlGG 235 (413)
T PLN02754 156 GRVAAGAVAKKILKQFAGTEILAYVSQVHDVVLPEDLVDHETLTLEQIESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGG 235 (413)
T ss_pred HHHHHHHHHHHHHHhhCCeEEEEEEEEEcCEecccccCCcchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHcCCCccc
Confidence 99999999999997646999999999999997532111212223678999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCcCCcccCchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccc
Q 013280 269 VVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGI 348 (446)
Q Consensus 269 vve~~v~gvP~GLG~p~fdkLda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGI 348 (446)
+|||+++|||+|||||+|||||++||+||||||||||||||+||+++.|+|||+||+|+++++|+++|+|||+|||+|||
T Consensus 236 ivev~~~gvP~GLG~pvfdkLda~LA~Al~SIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~~~~~TN~aGGI~GGI 315 (413)
T PLN02754 236 VVTCIVRNVPRGLGSPVFDKLEAELAKAMMSLPATKGFEIGSGFAGTLLTGSEHNDEFYMDEHGRIRTRTNRSGGIQGGI 315 (413)
T ss_pred EEEEEEECCCCCCCccccccchHHHHHHhcCcCceeEEEEccchhhhhccccccCcceeecCCCceEecccCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999876688999999999999999
Q ss_pred cCCCceEEEEEeccCCcccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccccchhh
Q 013280 349 SNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDL 428 (446)
Q Consensus 349 SnG~pIv~rva~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~~~~~ 428 (446)
||||||+||++|||||||.+||+|||++++|++++++||||||++|||+||+|||+||||||++|++++.+....+++.|
T Consensus 316 SnG~pIv~rva~KPtpSI~k~q~TVd~~~~e~~~~~~gRhDpCivprA~pV~EAm~AlvLaD~~L~~~~~~~~~~~~~~~ 395 (413)
T PLN02754 316 SNGEIIVMRIAFKPTSTIGKKQNTVTRDGQETELRARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCELFPINPVL 395 (413)
T ss_pred cCCCcEEEEEEeCCCcccccccccccCCCCEeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhCccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977555566667
Q ss_pred cCCCCCCC
Q 013280 429 QGTMKLPE 436 (446)
Q Consensus 429 ~~~~~~~~ 436 (446)
.+++.+..
T Consensus 396 ~~~~~~~~ 403 (413)
T PLN02754 396 QEPLGIAS 403 (413)
T ss_pred ccccccCc
Confidence 77776644
No 2
>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-152 Score=1137.84 Aligned_cols=363 Identities=55% Similarity=0.864 Sum_probs=349.6
Q ss_pred ccccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCcc
Q 013280 53 AGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVT 132 (446)
Q Consensus 53 m~ntfG~~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~T 132 (446)
|+||||++|||||||||||++||||||||||||+|++||||.||+| |||||++++|||+|+|+||||||||+|+|
T Consensus 1 ~~nt~G~~fr~tT~GESHG~alg~VIdG~PaGl~l~~edIq~eL~R-----RrpG~~r~~t~R~E~D~veIlSGv~~G~T 75 (369)
T COG0082 1 MGNTFGRLFRVTTFGESHGPALGAVIDGCPAGLELSEEDIQKELDR-----RRPGYSRGTTMRKEKDEVEILSGVFEGKT 75 (369)
T ss_pred CCCcccceEEEEeecccCCCeeEEEEeccCCCCccCHHHHHHHHHh-----cCCCCCCCcccccCCcceEEeeeeecCcc
Confidence 4699999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cCCcEEEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEE
Q 013280 133 TGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAY 212 (446)
Q Consensus 133 tGtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~ 212 (446)
|||||+++|+|+||+||||+++++.||||||||||++|||+|||||||||||||||+|||||||||+||.+ +||+|.+|
T Consensus 76 tGtPI~l~I~N~d~~s~~y~~~~~~pRPGHADyty~~KYg~rD~RgggRsSaReTa~rVAaGAvAKk~L~~-~gi~v~~~ 154 (369)
T COG0082 76 TGTPIALLIENTDQRSKDYSMIKDPPRPGHADYTYGIKYGFRDYRGGGRSSARETAARVAAGAVAKKLLRE-LGIEVLGH 154 (369)
T ss_pred CCCceEEEEEcCCCCccchhhcccCCCCCcccchhhhhcCccccCCcccchhHHHHHHHHHHHHHHHHHHh-CCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred EEEeeceecCCCCCCcccccHhhhhc--CcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchH
Q 013280 213 VSQAHNVVLPEDVVDHEMLTLDQVES--NIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLE 290 (446)
Q Consensus 213 V~~IG~i~~~~~~~~~~~~~~~~~~~--~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~p~fdkLd 290 (446)
|++||+++.+.. .+|+++++ |+|+|||++++++|+++|+++|++||||||+|||++.|||+|||+|+|||||
T Consensus 155 v~~iG~~~~~~~------~~~~~~~~~~sp~~~pd~e~~~~m~~~i~~~k~~GDSiGgvvevva~gvP~GLG~pvfdkLd 228 (369)
T COG0082 155 VVSIGGIEADDS------LDFEEVEQRASPVRCPDPEAEEEMEELIDKAKKEGDSIGGVVEVVAEGVPAGLGEPVFDKLD 228 (369)
T ss_pred eeeccCCccccc------CCHHHHhhccCCccCCCHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCCCCCCCCcccccch
Confidence 999999987531 44666666 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccc
Q 013280 291 AELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQ 370 (446)
Q Consensus 291 a~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q 370 (446)
|+||+||||||||||||||+||++++|+|||+||+|++++ +++++|||+|||+|||||||||++|++|||||||++||
T Consensus 229 a~lA~AlmsI~AvKGVEiG~GF~~a~~~GSe~~De~~~~~--~~~~~tN~~GGilGGitnG~pIv~r~a~KPt~SI~kp~ 306 (369)
T COG0082 229 AKLAHALMSIPAVKGVEIGDGFEAARMRGSEANDEITLDG--GIVRKTNNAGGILGGITNGEPIVVRVAFKPTPSIYKPQ 306 (369)
T ss_pred HHHHHHhhCCccceeEEeccchhhhhcccccccCceeeCC--CeeEccccCCceeccccCCccEEEEEEeCCCCccCccc
Confidence 9999999999999999999999999999999999999965 89999999999999999999999999999999999999
Q ss_pred cccccC-CceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccccchhhc
Q 013280 371 NTVTRE-KKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQ 429 (446)
Q Consensus 371 ~TVd~~-~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~~~~~~ 429 (446)
+|||++ +++.++.++||||||++|||+||+|||+||||||++|++++++...+++..+.
T Consensus 307 ~TVd~~t~e~~~~~~kgRhDpcv~prAvpV~EamvA~vLaD~~L~~~~~~~~~~~~~~~~ 366 (369)
T COG0082 307 RTVDLETGEEVEASTKGRHDPCVVPRAVPVVEAMVALVLADHLLRKFGQDPDVELKRRVA 366 (369)
T ss_pred cceEcccCCeeEEEecCcCCCccccchhHHHHHHHHHHHHHHHHHhhCCCcchhhcccch
Confidence 999988 58889999999999999999999999999999999999999998887765543
No 3
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=100.00 E-value=9.8e-147 Score=1101.44 Aligned_cols=345 Identities=54% Similarity=0.874 Sum_probs=311.3
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEE
Q 013280 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVF 140 (446)
Q Consensus 61 ~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~TtGtPIa~~ 140 (446)
|||||||||||++||||||||||||+||+|+||+||+| |||||++++|||+|+|+|+||||||+|+|||+||+++
T Consensus 1 ~r~ttfGESHG~aig~vIdG~PaGl~i~~e~i~~~L~R-----R~pG~~~~~t~R~E~D~v~ilSGv~~g~TtG~PI~~~ 75 (346)
T PF01264_consen 1 FRVTTFGESHGPAIGVVIDGCPAGLPIDEEDIQKELDR-----RRPGYGRGTTMRKEKDEVEILSGVFEGKTTGAPIAMI 75 (346)
T ss_dssp SEEEEEESTTSSEEEEEEES--BTEB--HHHHHHHHHH-----HTCSTTCCCCHHHCSCEEEEEESEETTEEESS-EEEE
T ss_pred CeEeeeecCCCCeeEEEEcCCCCCCccCHHHHHHHHHh-----cCCCCCCCCCCCCCCCeEEEEeceECCEeCCCCeEEE
Confidence 79999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeecee
Q 013280 141 VPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVV 220 (446)
Q Consensus 141 I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~V~~IG~i~ 220 (446)
|+|+||+||||+++++.||||||||||++|||++|+||||||||||||+||||||||||||++ +||+|.|||++||+|+
T Consensus 76 I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~Rgggr~SaReTa~rvaaGaiAk~~L~~-~gI~i~s~v~~IG~i~ 154 (346)
T PF01264_consen 76 IRNKDQRSWDYEELKDIPRPGHADYTGFLKYGFRDYRGGGRSSARETAPRVAAGAIAKQLLEE-LGIEIRSHVSSIGGIE 154 (346)
T ss_dssp EE-TTCHHCTTCTSTSSE-TTSSHHHHHHHHT-SSTHHHHHHSGGHHHHHHHHHHHHHHHHHC-TTEEEEEEEEEETTEE
T ss_pred EECCCCCCcchhhhhhcCCCCcccccceeccCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-CCeEEEEEhheeCCEe
Confidence 999999999999999999999999999999999999999999999999999999999999997 6999999999999998
Q ss_pred cCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhccC
Q 013280 221 LPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSL 300 (446)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~AlmSI 300 (446)
++. .......++++++++++|+|++++++|+++|++||++||||||+|||+|+|||+|||||+|||||++||+|||||
T Consensus 155 ~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~fdkLda~la~al~sI 232 (346)
T PF01264_consen 155 DRE--DDPSEEDFEKIEESPVRCPDPEAEEEMKELIDEAKKEGDSLGGIVEVVATGVPAGLGSPVFDKLDARLAQALMSI 232 (346)
T ss_dssp ECC--HHHHHHHHHHHHHSTTSBSSHHHHHHHHHHHHHHHHTTGGB-EEEEEEEES--TT-SBSSCCSHHHHHHHHHHTS
T ss_pred ccc--ccchhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCCCCCCcCcHHHHHHHHhhCC
Confidence 763 122345577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccccccccCC-ce
Q 013280 301 PATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREK-KE 379 (446)
Q Consensus 301 pAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~TVd~~~-~e 379 (446)
|||||||||+||++++|+|||+||+|++++ ++++++|||+|||+|||||||||+||++|||||||.+||+|||+.+ ++
T Consensus 233 pAvKgvEfG~Gf~~a~~~GSe~nD~~~~~~-~~~~~~tN~aGGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVdl~~~e~ 311 (346)
T PF01264_consen 233 PAVKGVEFGDGFEAASMRGSEVNDEIYYDD-GKIKRKTNNAGGILGGISNGMPIVFRVAFKPTPSIAKPQKTVDLKTGEE 311 (346)
T ss_dssp TTEEEEEETTGGGGGGSBHHHHS-SEEECT-TTEEESS-TTTTEETTEEBSS-EEEEEEE--SS--SSCEEEEBTTTSSE
T ss_pred CCeeeEEecCcHHHhhcchhhcccceeccc-ccccccCCCcccccccccCCceEEEEEEecccccccccccccccCCCCE
Confidence 999999999999999999999999999976 6799999999999999999999999999999999999999999655 88
Q ss_pred eeeecCCccccccccchhHHHHHHHHHHHHHHHHH
Q 013280 380 TELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMA 414 (446)
Q Consensus 380 ~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~ 414 (446)
+++.++||||||++|||+||+|||+||||||++|+
T Consensus 312 ~~~~i~gRhDpcivpra~~V~Eam~Alvlad~~Le 346 (346)
T PF01264_consen 312 ATLEIKGRHDPCIVPRAVPVVEAMVALVLADALLE 346 (346)
T ss_dssp EEEC--SSS-SCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCcccccchHHHHHHHHHHHHHHHhhC
Confidence 89999999999999999999999999999999996
No 4
>TIGR00033 aroC chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation.
Probab=100.00 E-value=6.6e-145 Score=1089.91 Aligned_cols=351 Identities=58% Similarity=0.931 Sum_probs=337.0
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEE
Q 013280 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVF 140 (446)
Q Consensus 61 ~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~TtGtPIa~~ 140 (446)
|||||||||||++||||||||||||+||+|+||+||+| |||||++++|||+|+|+|+||||||+|+|||+||+++
T Consensus 1 ~r~ttfGESHG~aig~vIdG~PaGl~l~~e~i~~~L~R-----R~pG~~~~~t~R~E~D~v~ilSGv~~g~TtGtPI~~~ 75 (351)
T TIGR00033 1 FRVTTFGESHGKAVGAIIDGCPAGLPLTEEDIQPDLDR-----RRPGYSRGTRMRKENDEVEILSGVFEGKTTGAPIALM 75 (351)
T ss_pred CeEEEeecCCCCeeEEEEccCCCCCEeCHHHHHHHHHc-----cCCCCCCCCCCCCCCCceEEeecccCCCcCCCCEEEE
Confidence 79999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeecee
Q 013280 141 VPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVV 220 (446)
Q Consensus 141 I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~V~~IG~i~ 220 (446)
|+|+|++|+||+++++.||||||||||++|||++|+||||||||||||+||||||||||||++.+||+|.|||+|||+|+
T Consensus 76 I~N~d~~s~dy~~~~~~pRPGHAD~t~~~KYg~~D~rgggr~SaReTa~rVaaGaiAk~~L~~~~gI~i~s~v~~IG~i~ 155 (351)
T TIGR00033 76 IRNKDVRSSDYSDIRTFPRPGHADYTYWLKYGIDDYRGGGRSSARETAARVAAGAVAKKLLAETSGIEIVAYVTQIGEVE 155 (351)
T ss_pred EEcCCCCcccchhccCCCCCCCcchhhHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEECCEe
Confidence 99999999999999999999999999999999999999999999999999999999999998746999999999999997
Q ss_pred cCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhccC
Q 013280 221 LPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSL 300 (446)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~AlmSI 300 (446)
.+.. .....+++++++|+++|||++++++|+++|++||++||||||+|||+|+|||+|||+|+|||||++||+|||||
T Consensus 156 ~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~a~~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~La~a~msI 233 (351)
T TIGR00033 156 IPRV--YYDPEEKERVDSSPVRCPDPEAEKEMVAEIDKAKKDGDSIGGVVECVARNVPVGLGEPLFDKLDARLAHAMMSI 233 (351)
T ss_pred cCcc--ccchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCCCCCCccccchHHHHHHhcCc
Confidence 5321 11122367899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccccccccCCcee
Q 013280 301 PATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKET 380 (446)
Q Consensus 301 pAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~TVd~~~~e~ 380 (446)
|||||||||+||++++|+|||+||+|++++ ++++|+|||+|||+|||||||||+||++|||||||.+||+|||++++|+
T Consensus 234 pAvKgvE~G~Gf~~a~~~GSe~nD~~~~~~-~~~~~~tN~~GGI~GGISnG~pIv~r~a~KP~pSI~~~q~TVd~~~~e~ 312 (351)
T TIGR00033 234 PAVKGVEIGDGFELASMRGSEANDEFVFED-GGIRRKTNNSGGILGGITNGEPIRVRIAFKPTPTIGKPQKTVDLDTEEP 312 (351)
T ss_pred CceeEEEECcchhhccccccccccceEeCC-CceEecCcCcccccccccCCCcEEEEEEeCCCcccccccccccCCCCEe
Confidence 999999999999999999999999999865 6899999999999999999999999999999999999999999999999
Q ss_pred eeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccc
Q 013280 381 ELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQC 419 (446)
Q Consensus 381 ~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~ 419 (446)
+++++||||||++|||+||+|||+||||||++|+++++|
T Consensus 313 ~~~~~gRhDpCivpra~~V~Eam~AlvLad~~l~~~~~d 351 (351)
T TIGR00033 313 ALATKGRHDPCVVPRAVPVVEAMTALVLADALLEQRASD 351 (351)
T ss_pred eeecCCCCCcccccccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999865
No 5
>PRK12463 chorismate synthase; Reviewed
Probab=100.00 E-value=1.4e-144 Score=1098.88 Aligned_cols=363 Identities=37% Similarity=0.542 Sum_probs=345.0
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEE
Q 013280 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVF 140 (446)
Q Consensus 61 ~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~TtGtPIa~~ 140 (446)
|||||||||||++||||||||||||+||+|+||+||+| |||||++++|||+|+|+|+||||||+|+|||+||+++
T Consensus 1 ~r~tt~GESHG~~ig~VIdG~PaGl~l~~e~I~~~L~R-----R~pG~~~~~t~r~E~D~v~ilSGv~~G~TtGtPI~~~ 75 (390)
T PRK12463 1 MRYITAGESHGPQLTVILEGVPAGLTLAAEHINKELLR-----RQKGHGRGRRMQIETDTVEIVSGVRHGMTLGSPITLI 75 (390)
T ss_pred CeEeecccCCCceeEEEEcCCCCCCccCHHHHHHHHhc-----cCCCCCCCCCCCCCCCceEEeecccCCCcCCCCeEEE
Confidence 69999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCCCCC---------------CCCccccccCCCCCcccccccccccCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhc
Q 013280 141 VPNTDQR---------------GHDYSEMSVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQF 204 (446)
Q Consensus 141 I~N~D~~---------------s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~~L~~~ 204 (446)
|+|+||+ |+||+++++.||||||||||++|||++|+||| |||||||||+||||||||||||++
T Consensus 76 I~N~D~~nw~~~m~~~~~~~~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~Rgglgr~SaReTa~rVaaGavAk~~L~~- 154 (390)
T PRK12463 76 VKNDDFKHWTKVMGAEPISEKESKEMKRTITKPRPGHADLNGAIKYGHRDIRNVLERSSARETTVRVAAGAVAKQILKE- 154 (390)
T ss_pred EEccCCCcchhccCccccccccchhhhcccCCCCCCCcchhhHHhcCCcccCCCcccchHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999 89999999999999999999999999999999 999999999999999999999986
Q ss_pred CCeEEEEEEEEeeceecCCCCCCcccccHhh-hhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCC
Q 013280 205 AGTEILAYVSQAHNVVLPEDVVDHEMLTLDQ-VESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGS 283 (446)
Q Consensus 205 ~GI~I~s~V~~IG~i~~~~~~~~~~~~~~~~-~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~ 283 (446)
+||+|.|||++||+|+.... .+.+..++.+ +++|+++|||++++++|+++|++||++||||||+|||+++|||+||||
T Consensus 155 ~gI~i~s~v~~IG~v~~~~~-~~~~~~~~~~~~~~s~~~c~d~~~~~~m~~~I~~ak~~gDSlGGivev~~~gvP~GLGs 233 (390)
T PRK12463 155 LGVEIAGHVLEIGGVKAKHI-SNLSIEEIQTITENSPVRCLDKTVEQEMMDAIDNAKSSGDSIGGIVEVIAEGMPIGVGS 233 (390)
T ss_pred CCEEEEEEEEEECCEecCcc-cccCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEECCCCCCCC
Confidence 79999999999999975310 0111122333 789999999999999999999999999999999999999999999999
Q ss_pred cc-cC-chHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEec
Q 013280 284 PV-FD-KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFK 361 (446)
Q Consensus 284 p~-fd-kLda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~K 361 (446)
|+ || |||++||+||||||||||||||+||+++.|+|||+||+|+++++++++|+|||+|||+|||||||||+||++||
T Consensus 234 pv~fd~kLda~LA~A~msIpAVKgVE~G~Gf~~a~~~GSe~nD~~~~~~~~~~~~~tN~aGGI~GGISnG~pIv~r~a~K 313 (390)
T PRK12463 234 YVHYDRKLDAKLAGAIMSINAFKGAEIGVGFEAARQPGSKVHDEILWDEEQGYTRKTNNAGGLEGGMTTGMPIVVRGVMK 313 (390)
T ss_pred CccccccchHHHHHHhcCcCceeEEEEccchhhhhCCCcccCceeEecCCCCeeecccCcccccccccCCCcEEEEEEEC
Confidence 99 98 99999999999999999999999999999999999999998766789999999999999999999999999999
Q ss_pred cCCcccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccccchhhcC
Q 013280 362 PTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 430 (446)
Q Consensus 362 PtpSI~~~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~~~~~~~ 430 (446)
|||||++||+|||+.++|.+...+||||||++|||+||+|||+||||||++|++|++|+|+||+++|+.
T Consensus 314 P~pSi~~pq~TVd~~t~e~~~~~~gRhDpc~vprA~~V~Eam~A~vLad~~l~~fg~d~~~~~~~~~~~ 382 (390)
T PRK12463 314 PIPTLYKPLASVDIDTKEAFQASIERSDSCAVPAAGVVAESVVAWELAHALVEQFGKDRMELIQQNITQ 382 (390)
T ss_pred CcccccccccCcccCCCceeeecCCCCCCccccchHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999988888888999999999999999999999999999999999999999998864
No 6
>PRK05382 chorismate synthase; Validated
Probab=100.00 E-value=4.9e-143 Score=1078.96 Aligned_cols=355 Identities=55% Similarity=0.866 Sum_probs=338.6
Q ss_pred CceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEE
Q 013280 59 TYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIH 138 (446)
Q Consensus 59 ~~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~TtGtPIa 138 (446)
++|||+|||||||++||||||||||||+||+|+||+||+| |||||++++|||+|.|+|+||||||+|+|||+||+
T Consensus 1 ~~~r~ttfGESHG~aig~vIdG~PaGl~i~~e~i~~~L~R-----R~pG~~~~~t~R~E~D~v~ilSGv~~g~TtG~PI~ 75 (359)
T PRK05382 1 KLFRVTTFGESHGPALGAVIDGCPAGLPLTEEDIQKELDR-----RRPGYSRGTTMRIEPDEVEILSGVFEGKTTGTPIA 75 (359)
T ss_pred CeEEEEEEecCCCCeeEEEEcCCCCCCEeCHHHHHHHHHc-----cCCCCCCCCCCCCCCCceEEeecccCCCcCCCCeE
Confidence 4799999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeec
Q 013280 139 VFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHN 218 (446)
Q Consensus 139 ~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~V~~IG~ 218 (446)
++|+|+|++|+||+++++.||||||||||++|||++|+||||||||||||+||||||||||||++ +||+|.|||++||+
T Consensus 76 ~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~d~~gggr~SaReTa~rVaaGaiAk~~L~~-~gI~i~s~v~~IG~ 154 (359)
T PRK05382 76 LLIRNTDQRSKDYSEIKTRPRPGHADYTYFLKYGFRDYRGGGRSSARETAARVAAGAVAKKLLKE-LGIEVRGHVVQIGG 154 (359)
T ss_pred EEEECCCCCCcchhhccCCCCCCccchhhHhhcCCcccCCcchhhHHHHHHHHHHHHHHHHHHHH-CCeEEEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999986 79999999999999
Q ss_pred eecCCCCCCcccccH-hhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHh
Q 013280 219 VVLPEDVVDHEMLTL-DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAM 297 (446)
Q Consensus 219 i~~~~~~~~~~~~~~-~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~Al 297 (446)
|+.. .+ ..++ +++++|+++|||++++++|+++|++||++||||||+|||+|+|||+|||||+|||||++||+||
T Consensus 155 i~~~---~~--~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~la~a~ 229 (359)
T PRK05382 155 IEAD---LD--WEEVEERADANPVRCPDPEAEEEMEELIDEAKKEGDSLGGVVEVVAEGVPAGLGEPVFDKLDADLAHAL 229 (359)
T ss_pred CcCC---CC--HHHHHhHhhcCCcCCCCHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCCCCccccccchHHHHHHh
Confidence 9642 11 1123 4577899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccccccccCC
Q 013280 298 MSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREK 377 (446)
Q Consensus 298 mSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~TVd~~~ 377 (446)
||||||||||||+||+++.|+|||+||+|+++ +++|+|||+|||+|||||||||+||++|||||||.+||+|||+.+
T Consensus 230 msIpAvKgvE~G~Gf~~a~~~GSe~nD~~~~~---~~~~~tN~~GGI~GGISnG~pIv~rva~KP~pSi~~~q~Tvdl~t 306 (359)
T PRK05382 230 MSINAVKGVEIGDGFAAARLRGSEVNDEIYYT---GIGRLTNHAGGILGGISNGEPIVVRVAFKPTPSIRKPQRTVDIRT 306 (359)
T ss_pred cCcCceeEEEECcchhhccccCcccCceeecC---CCeecccCCCCccccccCCCcEEEEEEecCcchhcccccCccccc
Confidence 99999999999999999999999999999752 489999999999999999999999999999999999999999766
Q ss_pred -ceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccccchhhc
Q 013280 378 -KETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQ 429 (446)
Q Consensus 378 -~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~~~~~~ 429 (446)
++++++++||||||++|||+||+|||+||||||++|++ ++++.+++++|.
T Consensus 307 ~e~~~~~~~gRhDpcivpra~~V~Eam~A~vLad~~l~~--~~~~~~~~~~~~ 357 (359)
T PRK05382 307 GEPTELATKGRHDPCVVPRAVPVAEAMVALVLADHLLRK--RDQLGEVKRNVP 357 (359)
T ss_pred CCeeeeccCCCCCCEeecchHHHHHHHHHHHHHHHHHHc--CCchhhHhhccc
Confidence 55599999999999999999999999999999999998 679999998875
No 7
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=100.00 E-value=6.4e-143 Score=1073.77 Aligned_cols=343 Identities=59% Similarity=0.897 Sum_probs=330.0
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEE
Q 013280 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVF 140 (446)
Q Consensus 61 ~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~TtGtPIa~~ 140 (446)
|||+|||||||++||||||||||||+||+|+||+||+| |||||++++|||+|+|+|+||||||+|+|||+||+++
T Consensus 1 ~r~ttfGESHG~~ig~vIdG~PaGl~i~~e~i~~~L~R-----R~pG~~~~~t~R~E~D~v~ilSGv~~g~TtGtPI~~~ 75 (344)
T cd07304 1 FRVTTFGESHGPALGVVIDGCPAGLPLDEEDIQKELDR-----RRPGQGRGTTPRIEKDEVEILSGVFEGKTTGTPIALL 75 (344)
T ss_pred CeEEEeecCCCCeeEEEEccCCCCCEeCHHHHHHHHHc-----cCCCCCCCCCCCCCCCceEEeecccCCCcCCCCEEEE
Confidence 79999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCccccccCCCCCcccccccccccC-CCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeece
Q 013280 141 VPNTDQRGHDYSEMSVAYRPSHADATYDMKYGV-RSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNV 219 (446)
Q Consensus 141 I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~-rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~V~~IG~i 219 (446)
|+|+||+||||+++++.||||||||||++|||+ +|+||||||||||||+||||||||||||++ +||+|.|||++||+|
T Consensus 76 I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~~d~~gggr~SaReTa~rVaaGaiAk~~L~~-~gI~i~s~v~~IG~i 154 (344)
T cd07304 76 IRNKDQRSWDYSMLKTLPRPGHADYTGFLKYGGFDDRRGGGRSSARETAARVAAGAVAKKLLKE-FGIEVVAHVKSIGGI 154 (344)
T ss_pred EEcCCCCCcchhhccCCCCCCccccchhhccCCccccCccchhHHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECCE
Confidence 999999999999999999999999999999987 999999999999999999999999999998 599999999999999
Q ss_pred ecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhcc
Q 013280 220 VLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMS 299 (446)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~AlmS 299 (446)
+++..... ....+++++++++||||++++++|+++|++||++||||||+|||+|+|||+|||||+|||||++||+||||
T Consensus 155 ~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f~klda~la~a~~s 233 (344)
T cd07304 155 EDEPFDLD-EEELLEEAEESPVRCPDPEAEEKMKELIDEAKKEGDSVGGVVEVVATGVPAGLGSPVFDKLDARLAQALMS 233 (344)
T ss_pred ecCccccc-chhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCCCCccccccchHHHHHHhcC
Confidence 87532111 11136789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccccccccCCce
Q 013280 300 LPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKE 379 (446)
Q Consensus 300 IpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~TVd~~~~e 379 (446)
||||||||||+||++++|+|||+||+|++++ ++++|+|||+|||+|||||||||+||++|||||||.+||+|||+++++
T Consensus 234 IpAvKgve~G~Gf~~a~~~GSe~nD~~~~~~-~~~~~~TN~aGGI~GGISnG~pIv~rva~KP~pSi~~~q~Tvd~~~~~ 312 (344)
T cd07304 234 IPAVKGVEIGSGFEAARMRGSEVNDEIYYDE-GGIKTKTNNAGGILGGISNGEPIVFRVAFKPTPSIAKPQKTVDLTGEE 312 (344)
T ss_pred cCceeEEEECcchhhhhccCcccCcceeeCC-CceeecccCccCccccccCCCcEEEEEEeCCCccccccccceeCCCCE
Confidence 9999999999999999999999999999975 589999999999999999999999999999999999999999999999
Q ss_pred eeeecCCccccccccchhHHHHHHHHHHHHHH
Q 013280 380 TELIARGRHDPCVVPRAVPMVEAMVALVLMDQ 411 (446)
Q Consensus 380 ~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~ 411 (446)
++++++||||||++|||+||+|||+||||||+
T Consensus 313 ~~~~~~gRhDpcivpra~~V~Eam~A~vlad~ 344 (344)
T cd07304 313 TELAVKGRHDPCAVPRAVPVVEAMVALVLADA 344 (344)
T ss_pred eeeecCCCCCcCcccccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999995
No 8
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-106 Score=786.66 Aligned_cols=365 Identities=83% Similarity=1.283 Sum_probs=356.6
Q ss_pred ccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCcccC
Q 013280 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTG 134 (446)
Q Consensus 55 ntfG~~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~TtG 134 (446)
|+||++||+||+||||-+.+|||+||||+|..|++.|||.+|-| |||||++++|||+|+|+|+|.||--.|+|+|
T Consensus 2 SsFGtLFrVTTYGESHCKSVGCIVdGcPPGM~LTEsD~Q~QLTR-----RRPGQS~LtTPR~EKD~V~IQSGTEFG~TLG 76 (368)
T KOG4492|consen 2 SSFGTLFRVTTYGESHCKSVGCIVDGCPPGMPLTESDLQFQLTR-----RRPGQSRLTTPRKEKDTVRIQSGTEFGMTLG 76 (368)
T ss_pred CcccceEEEeeeccccCcccceEeccCCCCCCcchhhcceeeec-----cCCCccccCCCccccceEEEecCcccceecC
Confidence 78999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CcEEEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEE
Q 013280 135 TPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVS 214 (446)
Q Consensus 135 tPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~V~ 214 (446)
|||+|+|.|+||+..||++|...|||+||||||..|||..--.||||+|||||++|||+||||+|+|++.+|++|.+||+
T Consensus 77 TPI~M~v~N~DQrPHDYSDMD~~PRPSHAD~TY~EKYGvKASSGGGRsSARETIGRVA~GAiAeK~L~q~~gvEIvAfVs 156 (368)
T KOG4492|consen 77 TPIHMFVPNTDQRPHDYSDMDVAPRPSHADATYDEKYGVKASSGGGRSSARETIGRVAPGALAKKILKQFAGTEILAYVS 156 (368)
T ss_pred CceEEEccCCcCCCCchhhhccCCCCcccccchhhhcCeeeccCCCchhhhhhhhccCchHHHHHHHHHhcCceEEeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHH
Q 013280 215 QAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELA 294 (446)
Q Consensus 215 ~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA 294 (446)
|||.|..+.+..+.+...++++++++++|||++.+++|.+.|++.+-++||+||++.|+++|.|-|||.|+||+|++.||
T Consensus 157 qvg~i~~p~~~~d~e~~T~E~~~~~~~rcpn~~~ae~m~k~i~~~r~~~~s~ggvvtc~vrn~p~glg~p~fdklea~la 236 (368)
T KOG4492|consen 157 QVHHVVLPEELVDHENLTLEQIENNIVRCPNPEYAEKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELA 236 (368)
T ss_pred ccceEecchhhcCcchhhhhhhcccceeCCCHHHHHHHHHHHHhccCCCccccceEEEEEecCCCCCCCchHHHHHHHHH
Confidence 99999998776777778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccccccc
Q 013280 295 KAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVT 374 (446)
Q Consensus 295 ~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~TVd 374 (446)
++|||+|+-||+|||+||......|+++||+||.++.+.++++||++||++||||||+-|.++++|||+.||...|+|+.
T Consensus 237 ~a~~s~pa~Kgfe~gsgf~g~~~~g~~hnd~fy~ee~~r~rt~tn~sgg~qggisnGe~in~sv~fk~~~tig~~q~t~t 316 (368)
T KOG4492|consen 237 KACMSLPATKGFEFGSGFAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQNTVT 316 (368)
T ss_pred HHhcCCcchhhhhhhccceeeccccccccCcccccccccceeecccccccccccccceeeeeeccccccccccceeeeee
Confidence 99999999999999999999999999999999998778899999999999999999999999999999999999999999
Q ss_pred cCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccccccc
Q 013280 375 REKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPI 424 (446)
Q Consensus 375 ~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~ 424 (446)
..+.+.++.++||||||++|||+|++|||+|+||+|++|.|...+....+
T Consensus 317 ~dk~e~~~~a~grhdp~v~pravp~veam~alvlvd~l~~q~a~~~~~~v 366 (368)
T KOG4492|consen 317 RDKVETEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCHLFPI 366 (368)
T ss_pred ccCcceeEeeccccCcccCccchhhhhhhccceehhHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999998876544
No 9
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism]
Probab=99.57 E-value=3.1e-17 Score=161.77 Aligned_cols=176 Identities=5% Similarity=-0.205 Sum_probs=160.7
Q ss_pred hhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhccCCcccEEEeccccc
Q 013280 234 DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFA 313 (446)
Q Consensus 234 ~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~AlmSIpAVKGVEfG~GF~ 313 (446)
+...+...+|+....+..|...+-.++..-|+.|++|.|...+||-|++||.|+|+++.+|+++|++++-|-.++|.+|+
T Consensus 192 e~m~k~i~~~r~~~~s~ggvvtc~vrn~p~glg~p~fdklea~la~a~~s~pa~Kgfe~gsgf~g~~~~g~~hnd~fy~e 271 (368)
T KOG4492|consen 192 EKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAGTFLTGLEHNDEFYTD 271 (368)
T ss_pred HHHHHHHHhccCCCccccceEEEEEecCCCCCCCchHHHHHHHHHHHhcCCcchhhhhhhccceeeccccccccCccccc
Confidence 44556678899998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccceeecCC-CceeeccCCCccccccccCCCceEEEEEeccCCcccccccccccCCceeeeecCCcccccc
Q 013280 314 GTFLTGSEHNDEFYTDEF-GNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCV 392 (446)
Q Consensus 314 ~a~~~GSe~nD~~~~~~~-g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpCi 392 (446)
-+-+++.+||-++-..+ +.....+|+++|+.+++|+|+...+-..+|-..+|.-.|.+--..+....+.+++|||+|+
T Consensus 272 -e~~r~rt~tn~sgg~qggisnGe~in~sv~fk~~~tig~~q~t~t~dk~e~~~~a~grhdp~v~pravp~veam~alvl 350 (368)
T KOG4492|consen 272 -ENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQNTVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALVL 350 (368)
T ss_pred -ccccceeecccccccccccccceeeeeeccccccccccceeeeeeccCcceeEeeccccCcccCccchhhhhhhcccee
Confidence 88899999999874322 3456889999999999999999999999999999999999888888889999999999999
Q ss_pred ccchhHHHHHHHHHHHHH
Q 013280 393 VPRAVPMVEAMVALVLMD 410 (446)
Q Consensus 393 vpRA~pVvEAm~AlvLaD 410 (446)
+||+.+..|+|.++++.|
T Consensus 351 vd~l~~q~a~~~~~~v~~ 368 (368)
T KOG4492|consen 351 VDQLMAQYAQCHLFPINP 368 (368)
T ss_pred hhHHHHHHHHhhccccCC
Confidence 999999999999988753
No 10
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=81.69 E-value=2.3 Score=44.47 Aligned_cols=84 Identities=21% Similarity=0.321 Sum_probs=55.9
Q ss_pred ceEEeeeecccCCeeeEEeecCCCCc--cCCHHHHHHHhcccc---------------cCcCCCCCCCCCCCCCCCCeEE
Q 013280 60 YFRVTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDRRI---------------VVSRRPGQSRITTPRKETDTCK 122 (446)
Q Consensus 60 ~~r~ttfGESHG~aig~VIDG~PaGl--~i~~edIq~eL~R~~---------------~~~RrpG~~r~~t~R~E~D~ve 122 (446)
..+.---|+|-|..+-|++.|||+|| ++. +.|+..|..-+ -..+.+|..--.....+.+++.
T Consensus 190 I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f-~klda~la~a~~sIpAvKgve~G~Gf~~a~~~GSe~nD~~~~~~~~~~ 268 (344)
T cd07304 190 IDEAKKEGDSVGGVVEVVATGVPAGLGSPVF-DKLDARLAQALMSIPAVKGVEIGSGFEAARMRGSEVNDEIYYDEGGIK 268 (344)
T ss_pred HHHHHHcCCCCceEEEEEEECCCCCCCcccc-ccchHHHHHHhcCcCceeEEEECcchhhhhccCcccCcceeeCCCcee
Confidence 34455689999999999999999998 333 66776666522 1234445333233333444444
Q ss_pred EE----ecccCCcccCCcEEEEEeCC
Q 013280 123 IY----SGVSEGVTTGTPIHVFVPNT 144 (446)
Q Consensus 123 Il----SGv~~G~TtGtPIa~~I~N~ 144 (446)
.. .|+..|.|+|.||-+.+.=+
T Consensus 269 ~~TN~aGGI~GGISnG~pIv~rva~K 294 (344)
T cd07304 269 TKTNNAGGILGGISNGEPIVFRVAFK 294 (344)
T ss_pred ecccCccCccccccCCCcEEEEEEeC
Confidence 33 58899999999999988543
No 11
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=73.87 E-value=0.98 Score=47.22 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=50.3
Q ss_pred eEEeeeecccCCeeeEEeecCCCCc--cCCHHHHHHHhcccc---------------cCcCCCCCCCCCCCCCCCCeEEE
Q 013280 61 FRVTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDRRI---------------VVSRRPGQSRITTPRKETDTCKI 123 (446)
Q Consensus 61 ~r~ttfGESHG~aig~VIDG~PaGl--~i~~edIq~eL~R~~---------------~~~RrpG~~r~~t~R~E~D~veI 123 (446)
.+..--|.|-|..+-|++.|+|+|| ++ .|.|+..|..-+ ...+.+|.---.....+.+++..
T Consensus 189 ~~ak~~gDSlGG~ve~~~~gvP~GLG~p~-fdkLda~la~al~sIpAvKgvEfG~Gf~~a~~~GSe~nD~~~~~~~~~~~ 267 (346)
T PF01264_consen 189 DEAKKEGDSLGGIVEVVATGVPAGLGSPV-FDKLDARLAQALMSIPAVKGVEFGDGFEAASMRGSEVNDEIYYDDGKIKR 267 (346)
T ss_dssp HHHHHTTGGB-EEEEEEEES--TT-SBSS-CCSHHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHS-SEEECTTTEEE
T ss_pred HHHHHhCCCCCeEEEEEEEecCCCCCCCC-cCcHHHHHHHHhhCCCCeeeEEecCcHHHhhcchhhcccceecccccccc
Confidence 3445579999999999999999998 45 667887776522 12344453222223333444444
Q ss_pred E----ecccCCcccCCcEEEEEeCC
Q 013280 124 Y----SGVSEGVTTGTPIHVFVPNT 144 (446)
Q Consensus 124 l----SGv~~G~TtGtPIa~~I~N~ 144 (446)
. .|+..|.|+|.||-+.+-=+
T Consensus 268 ~tN~aGGI~GGISnG~pIv~r~a~K 292 (346)
T PF01264_consen 268 KTNNAGGILGGISNGMPIVFRVAFK 292 (346)
T ss_dssp SS-TTTTEETTEEBSS-EEEEEEE-
T ss_pred cCCCcccccccccCCceEEEEEEec
Confidence 3 38899999999999987544
No 12
>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism]
Probab=72.90 E-value=5.3 Score=42.21 Aligned_cols=137 Identities=19% Similarity=0.276 Sum_probs=78.0
Q ss_pred EEeeeecccCCeeeEEeecCCCCc--cCCHHHHHHHhccccc---------------CcCCCCCCCCCCCCCCCCeEEEE
Q 013280 62 RVTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDRRIV---------------VSRRPGQSRITTPRKETDTCKIY 124 (446)
Q Consensus 62 r~ttfGESHG~aig~VIDG~PaGl--~i~~edIq~eL~R~~~---------------~~RrpG~~r~~t~R~E~D~veIl 124 (446)
++.--|.|=|..|-+|..|+|+|| ++ .+.++.+|++-+. ..+++|.-...-...+. .+.+.
T Consensus 196 ~~k~~GDSiGgvvevva~gvP~GLG~pv-fdkLda~lA~AlmsI~AvKGVEiG~GF~~a~~~GSe~~De~~~~~-~~~~~ 273 (369)
T COG0082 196 KAKKEGDSIGGVVEVVAEGVPAGLGEPV-FDKLDAKLAHALMSIPAVKGVEIGDGFEAARMRGSEANDEITLDG-GIVRK 273 (369)
T ss_pred HHHhcCCCcccEEEEEEeCCCCCCCCcc-cccchHHHHHHhhCCccceeEEeccchhhhhcccccccCceeeCC-CeeEc
Confidence 344568999999999999999998 45 6677777776321 23556644433344433 45554
Q ss_pred ----ecccCCcccCCcEEEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 013280 125 ----SGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKI 200 (446)
Q Consensus 125 ----SGv~~G~TtGtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~ 200 (446)
.|+..|.|+|-||-+-+.=+-..| -|...+..----|-......| |-.|.-=+=|++- .+-=+.|-.+|..+
T Consensus 274 tN~~GGilGGitnG~pIv~r~a~KPt~S-I~kp~~TVd~~t~e~~~~~~k-gRhDpcv~prAvp--V~EamvA~vLaD~~ 349 (369)
T COG0082 274 TNNAGGILGGITNGEPIVVRVAFKPTPS-IYKPQRTVDLETGEEVEASTK-GRHDPCVVPRAVP--VVEAMVALVLADHL 349 (369)
T ss_pred cccCCceeccccCCccEEEEEEeCCCCc-cCccccceEcccCCeeEEEec-CcCCCccccchhH--HHHHHHHHHHHHHH
Confidence 388999999999999886543333 111111110111111222222 4344433334432 22234566788888
Q ss_pred Hhhc
Q 013280 201 LKQF 204 (446)
Q Consensus 201 L~~~ 204 (446)
|++.
T Consensus 350 L~~~ 353 (369)
T COG0082 350 LRKF 353 (369)
T ss_pred HHhh
Confidence 8873
No 13
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=67.27 E-value=3.9 Score=34.47 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=23.9
Q ss_pred hHHHHHHHhccCCcccEEEecccccccccC
Q 013280 289 LEAELAKAMMSLPATKGFEVGSGFAGTFLT 318 (446)
Q Consensus 289 Lda~LA~AlmSIpAVKGVEfG~GF~~a~~~ 318 (446)
-++-||++||.|+.||+|-+|.-|=.....
T Consensus 35 ~~spLA~~Lf~i~gV~~Vf~~~dfItVtK~ 64 (87)
T PF08712_consen 35 SDSPLAQALFAIPGVKSVFIGDDFITVTKN 64 (87)
T ss_dssp TS-HHHHHHHTSTTEEEEEEETTEEEEEE-
T ss_pred ccCHHHHHhcCCCCEeEEEEECCEEEEeeC
Confidence 357899999999999999999987655443
No 14
>TIGR00033 aroC chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation.
Probab=56.17 E-value=12 Score=39.35 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=52.9
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCH-HHHHHHhcccc---------------cCcCCCCCCCCCCCCCCCCeEEEE
Q 013280 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSE-ADMQVDLDRRI---------------VVSRRPGQSRITTPRKETDTCKIY 124 (446)
Q Consensus 61 ~r~ttfGESHG~aig~VIDG~PaGl~i~~-edIq~eL~R~~---------------~~~RrpG~~r~~t~R~E~D~veIl 124 (446)
-+.-.-|.|-|..+-|++.|+|+||=-.. +.|+..|..-+ ...+.+|.---.....+.+++...
T Consensus 190 ~~a~~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~La~a~msIpAvKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~~~~ 269 (351)
T TIGR00033 190 DKAKKDGDSIGGVVECVARNVPVGLGEPLFDKLDARLAHAMMSIPAVKGVEIGDGFELASMRGSEANDEFVFEDGGIRRK 269 (351)
T ss_pred HHHHhcCCCCCcEEEEEEECCCCCCCCCccccchHHHHHHhcCcCceeEEEECcchhhccccccccccceEeCCCceEec
Confidence 44556799999999999999999996332 44555554411 122344532111122234444433
Q ss_pred ----ecccCCcccCCcEEEEEeCC
Q 013280 125 ----SGVSEGVTTGTPIHVFVPNT 144 (446)
Q Consensus 125 ----SGv~~G~TtGtPIa~~I~N~ 144 (446)
.|+..|.|+|.||-+.+.=+
T Consensus 270 tN~~GGI~GGISnG~pIv~r~a~K 293 (351)
T TIGR00033 270 TNNSGGILGGITNGEPIRVRIAFK 293 (351)
T ss_pred CcCcccccccccCCCcEEEEEEeC
Confidence 48899999999999987544
No 15
>PRK05382 chorismate synthase; Validated
Probab=52.88 E-value=26 Score=37.11 Aligned_cols=129 Identities=19% Similarity=0.258 Sum_probs=68.9
Q ss_pred cCCccccEEEEEEEeCCCCcCCcc-cCchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCC
Q 013280 262 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 340 (446)
Q Consensus 262 ~GDSlGGvve~~v~gvP~GLG~p~-fdkLda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 340 (446)
-|.|-|-.+-|++.|+|+||= + .+.|+..|..---+ +|. ...+ -.-.| .+...
T Consensus 8 fGESHG~aig~vIdG~PaGl~--i~~e~i~~~L~RR~pG--------~~~---~~t~--R~E~D--------~v~il--- 61 (359)
T PRK05382 8 FGESHGPALGAVIDGCPAGLP--LTEEDIQKELDRRRPG--------YSR---GTTM--RIEPD--------EVEIL--- 61 (359)
T ss_pred EecCCCCeeEEEEcCCCCCCE--eCHHHHHHHHHccCCC--------CCC---CCCC--CCCCC--------ceEEe---
Confidence 488999999999999999985 4 46677766643210 000 0111 01122 33333
Q ss_pred CccccccccCCCceEEEEEeccCCcc-cccccccccCC-ce-eeeecCCccccccccchhHHHH--HHHHHHHHHHHHHH
Q 013280 341 SGGIQGGISNGEIINMRIAFKPTSTI-GRKQNTVTREK-KE-TELIARGRHDPCVVPRAVPMVE--AMVALVLMDQLMAQ 415 (446)
Q Consensus 341 aGGI~GGISnG~pIv~rva~KPtpSI-~~~q~TVd~~~-~e-~~~~~~gRhDpCivpRA~pVvE--Am~AlvLaD~~l~~ 415 (446)
.|+-.|.|+|.||.+.+--|-+-|- +....++-.-+ -. +...-+|-.|--..=|++-=-- =++|=++|..+|++
T Consensus 62 -SGv~~g~TtG~PI~~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~d~~gggr~SaReTa~rVaaGaiAk~~L~~ 140 (359)
T PRK05382 62 -SGVFEGKTTGTPIALLIRNTDQRSKDYSEIKTRPRPGHADYTYFLKYGFRDYRGGGRSSARETAARVAAGAVAKKLLKE 140 (359)
T ss_pred -ecccCCCcCCCCeEEEEECCCCCCcchhhccCCCCCCccchhhHhhcCCcccCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5888899999999998866322111 22222221111 01 1111235556555555442211 23455677788865
Q ss_pred hc
Q 013280 416 HA 417 (446)
Q Consensus 416 ~~ 417 (446)
++
T Consensus 141 ~g 142 (359)
T PRK05382 141 LG 142 (359)
T ss_pred CC
Confidence 44
No 16
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=52.51 E-value=26 Score=38.76 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCc---------------cccEEEEEEEeCCCCcCCcccCchHHHHHHHhc--cCCcccEEEeccc
Q 013280 249 AEKMIAAIDAVRVRGDS---------------VGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGSG 311 (446)
Q Consensus 249 ~~~m~~~I~~ar~~GDS---------------lGGvve~~v~gvP~GLG~p~fdkLda~LA~Alm--SIpAVKGVEfG~G 311 (446)
-+++.+++.+++++|.. +.|...+=|.|||.-.| -++.+|+.|+-.-| .+| |-=|-|+.|
T Consensus 451 ~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~--~~~g~~~l~s~~~~p~g~p-v~~v~i~~~ 527 (577)
T PLN02948 451 PERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTS--HLDGLDSLLSIVQMPRGVP-VATVAIGNA 527 (577)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCC--CCCcHHHHHHHhcCCCCCe-EEEEecCCh
Confidence 34567778888877754 23334455778888776 57899999999999 999 999988888
Q ss_pred cccccc
Q 013280 312 FAGTFL 317 (446)
Q Consensus 312 F~~a~~ 317 (446)
|.++.+
T Consensus 528 ~~aa~~ 533 (577)
T PLN02948 528 TNAGLL 533 (577)
T ss_pred HHHHHH
Confidence 876643
No 17
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=48.99 E-value=50 Score=31.23 Aligned_cols=87 Identities=22% Similarity=0.264 Sum_probs=54.7
Q ss_pred HHHHHhhcCCeEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCcc----------
Q 013280 197 AKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSV---------- 266 (446)
Q Consensus 197 Ak~~L~~~~GI~I~s~V~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSl---------- 266 (446)
|.+.|++ |||...-.|.+.+.- -+++.+++++++++|..+
T Consensus 17 a~~~L~~-~gi~~dv~V~SaHRt-----------------------------p~~~~~~~~~a~~~g~~viIa~AG~aa~ 66 (156)
T TIGR01162 17 AADILEE-FGIPYELRVVSAHRT-----------------------------PELMLEYAKEAEERGIKVIIAGAGGAAH 66 (156)
T ss_pred HHHHHHH-cCCCeEEEEECcccC-----------------------------HHHHHHHHHHHHHCCCeEEEEeCCccch
Confidence 5678887 699966666555431 223455666677666421
Q ss_pred -----ccEEEEEEEeCCCCcCCcccCchHHHHHHHhc--cCCcccEEEecccccccc
Q 013280 267 -----GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGSGFAGTF 316 (446)
Q Consensus 267 -----GGvve~~v~gvP~GLG~p~fdkLda~LA~Alm--SIpAVKGVEfG~GF~~a~ 316 (446)
.|...+=|.|||.-.+ .++.+|+.|+-.-| .+| |-=|-|+.||.++.
T Consensus 67 Lpgvva~~t~~PVIgvP~~~~--~l~G~daLlS~vqmP~gvp-vatv~I~~~~nAa~ 120 (156)
T TIGR01162 67 LPGMVAALTPLPVIGVPVPSK--ALSGLDSLLSIVQMPSGVP-VATVAIGNAGNAAL 120 (156)
T ss_pred hHHHHHhccCCCEEEecCCcc--CCCCHHHHHHHhcCCCCCe-eEEEEcCChhHHHH
Confidence 1222333556776544 37899999998886 566 77788887776553
No 18
>PRK12463 chorismate synthase; Reviewed
Probab=45.71 E-value=56 Score=35.07 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=46.1
Q ss_pred cCCccccEEEEEEEeCCCCcCCcc-cCchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCC
Q 013280 262 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 340 (446)
Q Consensus 262 ~GDSlGGvve~~v~gvP~GLG~p~-fdkLda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 340 (446)
-|.|-|-.+-|++.|||+||= + .+.|+..|..---+ +|. ...+ ..-.| .+...
T Consensus 6 ~GESHG~~ig~VIdG~PaGl~--l~~e~I~~~L~RR~pG--------~~~---~~t~--r~E~D--------~v~il--- 59 (390)
T PRK12463 6 AGESHGPQLTVILEGVPAGLT--LAAEHINKELLRRQKG--------HGR---GRRM--QIETD--------TVEIV--- 59 (390)
T ss_pred cccCCCceeEEEEcCCCCCCc--cCHHHHHHHHhccCCC--------CCC---CCCC--CCCCC--------ceEEe---
Confidence 589999999999999999985 4 45666666543211 010 0111 11122 23332
Q ss_pred CccccccccCCCceEEEEE
Q 013280 341 SGGIQGGISNGEIINMRIA 359 (446)
Q Consensus 341 aGGI~GGISnG~pIv~rva 359 (446)
.|+-.|.|+|.||.+.+-
T Consensus 60 -SGv~~G~TtGtPI~~~I~ 77 (390)
T PRK12463 60 -SGVRHGMTLGSPITLIVK 77 (390)
T ss_pred -ecccCCCcCCCCeEEEEE
Confidence 688999999999999983
No 19
>TIGR02725 phenyl_P_gamma phenylphosphate carboxylase, gamma subunit. Members of this protein family are the gamma subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. The gamma subunit has no known homologs.
Probab=28.40 E-value=48 Score=27.75 Aligned_cols=45 Identities=27% Similarity=0.442 Sum_probs=42.0
Q ss_pred ccEEEEEEEeCCCCcCCcccCchHHHHHHHhccCCcccEEEeccc
Q 013280 267 GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSG 311 (446)
Q Consensus 267 GGvve~~v~gvP~GLG~p~fdkLda~LA~AlmSIpAVKGVEfG~G 311 (446)
|--.|..|+-+-+||-.+.|.++.++++.|+-..|.---|.||-|
T Consensus 17 gk~lelsvrtlnpglkkytyqrv~ae~s~aldkfpdqlqvr~grg 61 (84)
T TIGR02725 17 GKELELSVRTLNPGLKKYTYQRVKAELSNALDKFPDQLQVRFGRG 61 (84)
T ss_pred CceEEEEEeecCccHHHHHHHHHHHHhhhhhhhCcHhheeeeccC
Confidence 556799999999999999999999999999999999999999987
No 20
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=27.56 E-value=23 Score=19.03 Aligned_cols=9 Identities=67% Similarity=1.689 Sum_probs=7.1
Q ss_pred EEEEeCCCC
Q 013280 272 CIVRNCPRG 280 (446)
Q Consensus 272 ~~v~gvP~G 280 (446)
|.++|+|.|
T Consensus 1 C~i~nCP~G 9 (9)
T PF00220_consen 1 CYIRNCPIG 9 (9)
T ss_pred CccccCCCC
Confidence 568899876
No 21
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=24.36 E-value=96 Score=32.96 Aligned_cols=79 Identities=8% Similarity=0.035 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCeEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEE
Q 013280 194 GAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI 273 (446)
Q Consensus 194 GaIAk~~L~~~~GI~I~s~V~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~ 273 (446)
..+.++|+++ |+.|.+-|..-+++... .......+-+...||.-++++..++..+.|++|. .|+
T Consensus 280 ~~~~~~L~~~--g~~v~~g~l~~~d~d~~----~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~----------~vi 343 (402)
T PRK09536 280 ARAVSRLVAA--GASVSVGPVPEGDTAAE----TAARVGCEAVTVPPFKPIEDSTRAEATDLIIAAD----------AVV 343 (402)
T ss_pred HHHHHHHHHC--CCeEEEecCcCcchhHH----HHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCC----------EEE
Confidence 4566777764 99998888766665321 0112223446678899999999999999998875 477
Q ss_pred EEeCCCCcCCcccCc
Q 013280 274 VRNCPRGLGSPVFDK 288 (446)
Q Consensus 274 v~gvP~GLG~p~fdk 288 (446)
..|+|.|-++++-..
T Consensus 344 ~~~~~~g~~~~~~~~ 358 (402)
T PRK09536 344 AAGVAAAARSGVIGL 358 (402)
T ss_pred ECCCccCCCCCchhe
Confidence 889999999887544
No 22
>COG0250 NusG Transcription antiterminator [Transcription]
Probab=21.41 E-value=2.1e+02 Score=27.32 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=36.8
Q ss_pred eeeEEeecC-CCCccCCHHHHHHHhcccccCcCCCCC--CCCCCCCCCCCeEEEEecccCCc
Q 013280 73 GVGCIIDGC-PPRIPLSEADMQVDLDRRIVVSRRPGQ--SRITTPRKETDTCKIYSGVSEGV 131 (446)
Q Consensus 73 aig~VIDG~-PaGl~i~~edIq~eL~R~~~~~RrpG~--~r~~t~R~E~D~veIlSGv~~G~ 131 (446)
++...|-+. +--.+|+.++++..|.+ -+... -+....=.+.|.|+|++|-|.|.
T Consensus 84 gV~GfVg~~~~~P~pi~~~ei~~~l~~-----~~~~~~~~~~~~~~e~Gd~VrI~~GpFa~f 140 (178)
T COG0250 84 GVTGFVGSGGAKPVPLSEEEIEHILGF-----LEEEVAPKKPKVDFEPGDVVRIIDGPFAGF 140 (178)
T ss_pred CcEEEeccCCCCCcccCHHHHHHHHhh-----ccccccCCcccccCCCCCEEEEeccCCCCc
Confidence 455555554 67789999999996665 33221 12334456799999999999873
No 23
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain.
Probab=20.69 E-value=1.4e+02 Score=27.05 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCcc---------ccEEEEEEEeCCCC
Q 013280 250 EKMIAAIDAVRVRGDSV---------GGVVTCIVRNCPRG 280 (446)
Q Consensus 250 ~~m~~~I~~ar~~GDSl---------GGvve~~v~gvP~G 280 (446)
++.++.-++|+++|.+. ..++.+.| |+|||
T Consensus 81 ~~Ar~~Ye~A~~~G~~a~L~eq~~~~~~~F~~~V-NIppg 119 (130)
T smart00609 81 EVAQKQYEKAVSQGKTAGLVRASGRSMEQFTVSV-NVAPG 119 (130)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecCCccCcEEEEE-EeCCC
Confidence 34566778888888763 38999999 99998
No 24
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=20.67 E-value=85 Score=19.96 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=14.4
Q ss_pred CCCCeEEEEecccCCc
Q 013280 116 KETDTCKIYSGVSEGV 131 (446)
Q Consensus 116 ~E~D~veIlSGv~~G~ 131 (446)
.+.|.|+|++|-+.|+
T Consensus 3 ~~G~~V~I~~G~~~g~ 18 (28)
T smart00739 3 EVGDTVRVIAGPFKGK 18 (28)
T ss_pred CCCCEEEEeECCCCCc
Confidence 4789999999999987
Done!