Query 013280
Match_columns 446
No_of_seqs 197 out of 1039
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 07:36:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r53_A Chorismate synthase; tw 100.0 2E-152 6E-157 1150.1 24.9 365 54-423 1-373 (382)
2 1um0_A Chorismate synthase; be 100.0 2E-150 6E-155 1127.5 31.9 357 54-429 1-363 (365)
3 1sq1_A Chorismate synthase; st 100.0 1E-150 4E-155 1131.5 26.4 360 54-429 1-360 (370)
4 4ecd_A Chorismate synthase; 4- 100.0 2E-150 6E-155 1141.1 26.3 368 59-431 3-389 (398)
5 1qxo_A Chorismate synthase; be 100.0 5E-149 2E-153 1127.6 28.8 363 61-430 1-380 (388)
6 2o11_A Chorismate synthase; sh 100.0 3E-148 9E-153 1126.9 27.6 364 60-430 1-384 (407)
7 1q1l_A Chorismate synthase; be 100.0 4E-147 1E-151 1116.8 28.7 365 60-430 8-393 (401)
8 2k1h_A Uncharacterized protein 74.8 1.4 4.6E-05 36.9 2.1 28 290-317 38-65 (94)
9 1pqx_A Conserved hypothetical 74.2 1.3 4.3E-05 36.9 1.7 28 290-317 38-65 (91)
10 2ltm_A NFU1 iron-sulfur cluste 66.3 1.6 5.5E-05 37.4 0.0 29 289-317 47-75 (107)
11 4ecd_A Chorismate synthase; 4- 53.1 22 0.00074 36.7 6.5 73 262-361 10-83 (398)
12 2ltl_A NIFU-like protein, mito 55.7 3.4 0.00012 36.0 0.0 28 290-317 60-88 (119)
13 1o4v_A Phosphoribosylaminoimid 46.4 21 0.00074 33.2 4.7 40 274-316 94-135 (183)
14 1qxo_A Chorismate synthase; be 27.4 25 0.00085 36.2 2.1 83 64-146 208-313 (388)
15 1q1l_A Chorismate synthase; be 25.9 27 0.00094 36.0 2.1 82 63-144 220-324 (401)
16 3lp6_A Phosphoribosylaminoimid 23.9 84 0.0029 29.0 4.7 87 197-316 26-129 (174)
17 1rlh_A Conserved hypothetical 23.5 68 0.0023 29.6 4.0 35 58-93 125-160 (173)
18 2zqe_A MUTS2 protein; alpha/be 23.5 2.7E+02 0.0092 21.9 7.1 55 245-310 14-68 (83)
19 2o11_A Chorismate synthase; sh 22.4 36 0.0012 35.2 2.1 83 63-145 212-316 (407)
No 1
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=100.00 E-value=1.8e-152 Score=1150.15 Aligned_cols=365 Identities=54% Similarity=0.872 Sum_probs=266.5
Q ss_pred cccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCccc
Q 013280 54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTT 133 (446)
Q Consensus 54 ~ntfG~~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~Tt 133 (446)
+||||++|||||||||||++||||||||||||+||+||||.||+| |||||++++|||+|+|+|+||||||+|+||
T Consensus 1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~R-----RrpG~~r~~t~R~E~D~v~IlSGv~~G~Tt 75 (382)
T 1r53_A 1 MSTFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTR-----RRPGQSKLSTPRDEKDRVEIQSGTEFGKTL 75 (382)
T ss_dssp CCEECSSSEEEEECCTTSSEEEEEEECCCTTCBCCGGGTHHHHHT-----TCC------------CCCEECSSEETTEEC
T ss_pred CCcCcceeEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHh-----hCCCCCCCCCCCCCCCeeEEeecccCCccC
Confidence 489999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEE
Q 013280 134 GTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYV 213 (446)
Q Consensus 134 GtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~V 213 (446)
||||+++|+|+||+|+||+++++.||||||||||++|||+|||||||||||||||+||||||||||||++.+||+|.|||
T Consensus 76 GtPI~~~I~N~D~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAiAk~~L~~~~GI~i~a~v 155 (382)
T 1r53_A 76 GTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFV 155 (382)
T ss_dssp SSCEEEEEEC-----------------------------------------CCCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEecCCCCCCchhhccCCCCCCccchhhhhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986699999999
Q ss_pred EEeeceecCCCCCC------cccccHhhhhcCc-CCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCccc
Q 013280 214 SQAHNVVLPEDVVD------HEMLTLDQVESNI-VRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF 286 (446)
Q Consensus 214 ~~IG~i~~~~~~~~------~~~~~~~~~~~~~-vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~p~f 286 (446)
++||+|+....... ....+++++++|+ |||||++++++|+++|+++|++||||||+|||+|+|||+|||||+|
T Consensus 156 ~~iG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pvf 235 (382)
T 1r53_A 156 TQIGEIKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCF 235 (382)
T ss_dssp EEETTEECCCCTTCHHHHHHHHHCCHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTT
T ss_pred EEEcCEecccccccccccccccccCHHHHhcCCCccCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCccc
Confidence 99999986421000 0134578899999 9999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCC-CceeeccCCCccccccccCCCceEEEEEeccCCc
Q 013280 287 DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEF-GNIRTRTNRSGGIQGGISNGEIINMRIAFKPTST 365 (446)
Q Consensus 287 dkLda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~-g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpS 365 (446)
|||||+||+||||||||||||||+||++++|+|||+||+|+.+++ |+++|+|||+|||+|||||||||+||+|||||||
T Consensus 236 dkLda~LA~A~mSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~S 315 (382)
T 1r53_A 236 DKLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVAT 315 (382)
T ss_dssp BCHHHHHHHHHHTSTTBCCCEETTTTGGGGSCHHHHHCSBC--------CBCCCCSCSEETTEECSSCEEEEEEECCC--
T ss_pred ccchHHHHHHhcCccceeEEEeccchhhhhccccccccceeccccCCceeecCcCccCccccccCCCeEEEEEEECCccc
Confidence 999999999999999999999999999999999999999984321 5799999999999999999999999999999999
Q ss_pred ccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccc
Q 013280 366 IGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFP 423 (446)
Q Consensus 366 I~~~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~ 423 (446)
|.+||+|||++++++++.++||||||++|||+||+|||+||||||++|++++++...+
T Consensus 316 I~~~q~TVd~~~~~~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~~~~~~ 373 (382)
T 1r53_A 316 ISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADALLIQKARDFSRS 373 (382)
T ss_dssp ---------------------CCCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccccccccccccCcchhhccCCCCcccccchHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 9999999999999999999999999999999999999999999999999998765443
No 2
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=100.00 E-value=1.8e-150 Score=1127.54 Aligned_cols=357 Identities=39% Similarity=0.606 Sum_probs=343.2
Q ss_pred cccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCccc
Q 013280 54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTT 133 (446)
Q Consensus 54 ~ntfG~~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~Tt 133 (446)
+||||++|||||||||||++||||||||||||+||++|||.||+| |||||++++|||+|+|+|+||||||+|+||
T Consensus 1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~R-----RrpG~~r~~t~R~E~D~v~IlSGv~~G~Tt 75 (365)
T 1um0_A 1 MNTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKR-----RQGGRNVFITPRKEDDKVEITSGVFEDFST 75 (365)
T ss_dssp CCEECSSSEEEECCSCCSSEEEEEEECCCBTCBCCHHHHHHHHHH-----HTTCCSSCCCHHHHSCEEEECSSEETTEEC
T ss_pred CCcCcceeEEEeeccCCCCeeEEEEecCCCCCccCHHHHHHHHHh-----hCCCCCCCCCCCCCCCeeEEeecccCCccC
Confidence 489999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEE
Q 013280 134 GTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYV 213 (446)
Q Consensus 134 GtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~V 213 (446)
||||+++|+|+||+|+||+++++.||||||||||++|||+|||||||||||||||+||||||||||||++ +||+|.|||
T Consensus 76 GtPI~~~I~N~d~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~rVAaGAiAk~~L~~-~gI~i~~~v 154 (365)
T 1um0_A 76 GTPIGFLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLRE-IGIVCESGI 154 (365)
T ss_dssp SSCEEEEEECCCSCCCCCCCCTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHHHHHHHHH-TTEEEEEEE
T ss_pred CCCeEEEEEcCCCCCCchhhccCCCCCCCcchhhHhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHH-CCcEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 599999999
Q ss_pred EEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEe------CCCCcCCcccC
Q 013280 214 SQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRN------CPRGLGSPVFD 287 (446)
Q Consensus 214 ~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~g------vP~GLG~p~fd 287 (446)
++||+|+.. ..+|+++++|+|||||++++++|+++|+++|++||||||+|||+++| ||+|||+|+||
T Consensus 155 ~~iG~i~~~-------~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~gDSiGGvve~v~~g~~~~~~vP~GLG~pvfd 227 (365)
T 1um0_A 155 IEIGGIKAK-------NYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYA 227 (365)
T ss_dssp EEETTEECS-------SCCHHHHHHSTTCBSCHHHHHHHHHHHHHHHHTTCCBCEEEEEEEEESSTTCCCCSCCSBTTTB
T ss_pred EEECCEecC-------cCCHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEcccccCcCCCCCCCcccc
Confidence 999999863 23478899999999999999999999999999999999999999999 99999999999
Q ss_pred chHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCccc
Q 013280 288 KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIG 367 (446)
Q Consensus 288 kLda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~ 367 (446)
||||+||+||||||||||||||+||++++|+|||+||+|+ + +| ++|||+|||+|||||||||+||+||||||||.
T Consensus 228 kLda~LA~A~msI~AvKGvEiG~GF~~a~~~GSe~nD~~~-~-~g---~~tN~aGGi~GGISnG~pIv~r~a~KPt~SI~ 302 (365)
T 1um0_A 228 KLDAKIAEAMMGLNGVKAVEIGKGVESSLLKGSEYNDLMD-Q-KG---FLSNRSGGVLGGMSNGEEIIVRVHFKPTPSIF 302 (365)
T ss_dssp CHHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHCCCEE-T-TE---ESCCTTTTEETTEECSSCEEEEEEECCCSCCS
T ss_pred cchHHHHHHhcCccceeeEEeccchhhhhcccccccchhc-c-CC---CcccCccCccccccCCCcEEEEEEECCCcccc
Confidence 9999999999999999999999999999999999999997 3 33 49999999999999999999999999999999
Q ss_pred ccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccccchhhc
Q 013280 368 RKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQ 429 (446)
Q Consensus 368 ~~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~~~~~~ 429 (446)
+||+|||++++++++.++||||||++|||+||+|||+||||||++|++++++ +..++..|+
T Consensus 303 ~~q~TVd~~~~~~~~~~~gRhDpCvvprA~pV~EAm~AlvlaD~~L~~~~~~-~~~~~~~~~ 363 (365)
T 1um0_A 303 QPQRTIDINGNECECLLKGRHDPCIAIRGSVVCESLLALVLADMVLLNLTSK-IEYLKTIYN 363 (365)
T ss_dssp SCEEEEBTTSCEEEECCCSCCCSCTHHHHHHHHHHHHHHHHHHHHHHGGGSB-HHHHHHHHT
T ss_pred ccccceecCCCEeeeccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhh-ccccccccc
Confidence 9999999999999999999999999999999999999999999999999976 555555444
No 3
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=100.00 E-value=1.1e-150 Score=1131.47 Aligned_cols=360 Identities=40% Similarity=0.624 Sum_probs=272.5
Q ss_pred cccccCceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCccc
Q 013280 54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTT 133 (446)
Q Consensus 54 ~ntfG~~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~Tt 133 (446)
+||||++|||||||||||++||||||||||||+||+||||.||+| || ||++++|||+|+|+|+||||||+|+||
T Consensus 1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~R-----Rr-G~~r~~t~R~E~D~v~IlSGv~~G~Tt 74 (370)
T 1sq1_A 1 MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDK-----RK-GGSKFATPRKESDKAQVLSGVFEGYTT 74 (370)
T ss_dssp CCEECSSSEEEEECCGGGSCEEEEEECCCSSCBCCHHHHHHHHHH-----TT-C-----------CCEEECSSEETTEEC
T ss_pred CCcCcceeEEEeeccCCCCeeEEEEecCCCCCccCHHHHHHHHHH-----hc-CCCCCCCCCCCCCeeEEeecccCCEeC
Confidence 489999999999999999999999999999999999999999999 99 999999999999999999999999999
Q ss_pred CCcEEEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEE
Q 013280 134 GTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYV 213 (446)
Q Consensus 134 GtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~V 213 (446)
||||+++|+|+||+|+||+++++.||||||||||++|||+|||||||||||||||+||||||||||||++ +||+|.|||
T Consensus 75 GtPI~~~I~N~d~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAiAk~~L~~-~GI~i~a~v 153 (370)
T 1sq1_A 75 GHPIAIVVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLRE-FDICVQSGV 153 (370)
T ss_dssp SSCEEEEEC----------------------------------------CCCTHHHHHHHHHHHHHHHHT-TTCEEEEEE
T ss_pred CCCeEEEEecCCCCCCchhhhcCCCCCCCcchhhhhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHH-CCcEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 799999999
Q ss_pred EEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHH
Q 013280 214 SQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAEL 293 (446)
Q Consensus 214 ~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~L 293 (446)
++||+|+... +....+|+++++|+|||||++++++|+++|+++|++||||||+|||+|+|||+|||||+||||||+|
T Consensus 154 ~~iG~i~~~~---~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~~k~~gDS~GGvve~v~~gvP~GLG~pvfdkLda~L 230 (370)
T 1sq1_A 154 FGVGTFVSNL---KEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKL 230 (370)
T ss_dssp EEETTEECCS---CGGGSCHHHHHHSTTCBSCTTTHHHHHHHHHHHHHTTCCCCEEEEEEEESCCBSCSBTTTBCHHHHH
T ss_pred EEECCEecCC---CcCccCHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEcCCCCCCCcccccchHHH
Confidence 9999998642 1234558889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCccccccccc
Q 013280 294 AKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTV 373 (446)
Q Consensus 294 A~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~TV 373 (446)
|+||||||||||||||+||++++|+|||+||+| + +|++ +|||+|||+|||||||||+||+||||||||.+||+||
T Consensus 231 A~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~--~-~g~~--~tN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q~TV 305 (370)
T 1sq1_A 231 AHALMGINAVKAVEIGEGINASKMRGSCNNDAL--K-DGKF--LSNHSGGILGGISNGENLILKTYFKPTPSIFAKQESI 305 (370)
T ss_dssp HHHHHTSTTEEEEEETTGGGGGGSCHHHHCCCC--S-SSSC--SCCTTCSEETTEEBSSCEEEEEEECCCC---------
T ss_pred HHHhcCccceeEEEeccchhhhhcccccccccc--c-CCcc--ccccCCCccccccCCCcEEEEEEecCCccccccccce
Confidence 999999999999999999999999999999999 3 3544 9999999999999999999999999999999999999
Q ss_pred ccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccccchhhc
Q 013280 374 TREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQ 429 (446)
Q Consensus 374 d~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~~~~~~ 429 (446)
|++++++++.++||||||++|||+||+|||+||||||++|++++++ +..++..|.
T Consensus 306 d~~~~~~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~~-~~~~~~~~~ 360 (370)
T 1sq1_A 306 DKFGNNLKFELKGRHDPCVGVRGSVVASAMVRLVLADCLLLNASAN-LNNLKNAYG 360 (370)
T ss_dssp ------------CCSCSCTHHHHHHHHHHHHHHHHHHHHHHTGGGS-HHHHHHHTC
T ss_pred ecCCCEeeeccCCCCCceeecccHHHHHHHHHHHHHHHHHHHhhhh-hhccchhhe
Confidence 9999999999999999999999999999999999999999999876 555555553
No 4
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=100.00 E-value=1.9e-150 Score=1141.06 Aligned_cols=368 Identities=34% Similarity=0.470 Sum_probs=257.5
Q ss_pred CceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEE
Q 013280 59 TYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIH 138 (446)
Q Consensus 59 ~~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~TtGtPIa 138 (446)
++|||||||||||++||||||||||||+||+||||.||+| |||||++++|||+|.|+|+||||||+|+||||||+
T Consensus 3 ~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~eL~R-----RrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~ 77 (398)
T 4ecd_A 3 AMLRWQTAGESHGEALVAMIEGLPAGVRISTDDIVSALAR-----RRLGYGRGARMKFEQDKVRLLTGVRHGLTLGSPVA 77 (398)
T ss_dssp CCCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHH-----TTCCCBCC------CCCEEEEESEETTEECSSCEE
T ss_pred ceEEEEeeecCCCCeeEEEEccCCCCCccCHHHHHHHHHh-----cCCCCCCCCCCCCCCCceEEEEcccCCCcCCCCeE
Confidence 5899999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred EEEeCCCCCC---------CCcccc-------ccCCCCCcccccccccccCCCCCCC-chhhHHHHHHHHHHHHHHHHHH
Q 013280 139 VFVPNTDQRG---------HDYSEM-------SVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKIL 201 (446)
Q Consensus 139 ~~I~N~D~~s---------~DY~~~-------~~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~~L 201 (446)
++|+|+||+| .||+++ ++.||||||||||++|||++||||| |||||||||+||||||||||||
T Consensus 78 l~I~N~d~~~w~~~m~~~s~dy~~~~~~~~~~~~~pRPGHAD~t~~~KYG~~D~RgglgRsSaRETa~RVAaGAiAk~~L 157 (398)
T 4ecd_A 78 IEIANTEWPKWTEVMSADALDHDLPREGRNAPLSRPRPGHADLTGMRKYGFDDARPVLERSSARETASRVALGEVAKQFL 157 (398)
T ss_dssp EEEEC----------------------------------------------------------CCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCccchhhhccCCccChhhhhhhcccccCCCCCCccchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHH
Confidence 9999999986 599988 6899999999999999999999999 9999999999999999999999
Q ss_pred hhcCCeEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCc
Q 013280 202 KQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGL 281 (446)
Q Consensus 202 ~~~~GI~I~s~V~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GL 281 (446)
++.+||+|.|||++||+|+++....+....+++++++|+|||||++++++|+++|++||++||||||+|||+|+|||+||
T Consensus 158 ~~~~GI~i~s~v~~iG~i~~~~~~~~~~~~~~~~~~~~~~rc~d~~~~~~m~~~I~~ak~~gDS~GGvve~v~~gvP~GL 237 (398)
T 4ecd_A 158 DQAFGIRTVAHVVALGGVQTNPDLPLPTPDDLEALDASPVRTLDKEAEVRIIERINEAKKAADTLGGVIEVLAYGVPAGI 237 (398)
T ss_dssp HHHHCCEEEEEEEEETTEECCSSSCCCCGGGHHHHHHSTTSCSCHHHHHHHHHHHHTC--CGGGCCEEEEEEEESCCSCC
T ss_pred hhcCCeEEEEEEEEEcCEEcccccCCCCHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEEcCCCCC
Confidence 98459999999999999987532223345668889999999999999999999999999999999999999999999999
Q ss_pred CCccc--CchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEE
Q 013280 282 GSPVF--DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIA 359 (446)
Q Consensus 282 G~p~f--dkLda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva 359 (446)
|||+| |||||+||+||||||||||||||+||++++|+|||+||+|+++++|.++|+|||+|||+|||||||||+||+|
T Consensus 238 G~pvf~d~kLda~LA~A~mSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~g~~~~~TN~aGGI~GGISnG~pIv~r~a 317 (398)
T 4ecd_A 238 GTYVESDRRLDAALASAIMGIQAFKGVEIGDGFLAASRPGSQAHDEIVVNADGRIDRLSNRAGGIEGGMSNGQVIRVRGA 317 (398)
T ss_dssp BCSSSSTTSHHHHHHHHHHTSTTEEEEEETTTTTC-------------------------CCCSEETTEECSSCEEEEEE
T ss_pred CCCcccccChhHHHHHHhcCcCceeeEEecchHhhhhccccccccceeecCCCceeecccCCcCccccccCCCcEEEEEE
Confidence 99999 9999999999999999999999999999999999999999976545699999999999999999999999999
Q ss_pred eccCCcccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccccchhhcCC
Q 013280 360 FKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGT 431 (446)
Q Consensus 360 ~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~~~~~~~~ 431 (446)
|||||||.+||+|||++++|.+...+||||||++|||+||+|||+||||||++|++|++|+++|++++|+.-
T Consensus 318 ~KPt~SI~~~q~TVd~~~~e~~~~~~gRhDpCvvprA~pV~EAm~AlvLad~~L~~~g~d~~~e~~~~~~~y 389 (398)
T 4ecd_A 318 MKPIPSIPKALRTVDVLTGESAQAINQRSDSTAVPAASVVAEAMVRLTLAKYALDKFGGDSVAETRRNLESY 389 (398)
T ss_dssp ECC-------------------------CCBCSHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHHH
T ss_pred ecCcccccccccceecCCCCeeeccCCCCCcccccchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999999999999888888899999999999999999999999999999999999999999988653
No 5
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=100.00 E-value=5.2e-149 Score=1127.59 Aligned_cols=363 Identities=34% Similarity=0.466 Sum_probs=346.5
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEE
Q 013280 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVF 140 (446)
Q Consensus 61 ~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~TtGtPIa~~ 140 (446)
|||||||||||++||||||||||||+||+||||.||+| |||||++++|||+|+|+|+||||||+|+||||||+++
T Consensus 1 fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~R-----RrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~~~ 75 (388)
T 1qxo_A 1 MRYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRR-----RQGGYGRGGRMKIENDQVVFTSGVRHGKTTGAPITMD 75 (388)
T ss_dssp CEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHH-----HHCSTTCCTHHHHCCCCCEEEESEETTEECSSCEEEE
T ss_pred CeEeecccCCCCeeEEEEecCCCCCccCHHHHHHHHHh-----hCCCCCCCCcCCCCCCeeEEeecccCCccCCCCeEEE
Confidence 79999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCCCCC---------CCCcc-cc---ccCCCCCcccccccccccCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCC
Q 013280 141 VPNTDQR---------GHDYS-EM---SVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAG 206 (446)
Q Consensus 141 I~N~D~~---------s~DY~-~~---~~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~~L~~~~G 206 (446)
|+|+||+ |+||+ ++ ++.||||||||||++|||+|||||| |||||||||+||||||||||||++ +|
T Consensus 76 I~N~d~~~w~~~ms~~s~dy~~~~~~~~~~~RPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~-~G 154 (388)
T 1qxo_A 76 VINKDHQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAE-LD 154 (388)
T ss_dssp EECGGGGGGTTTTCSSCCCGGGTTTTCCCSCCTTSSHHHHHHHHTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHH-TT
T ss_pred EecCChhhhhhhcccCCccchhhhhcccCCCCCCccchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHHh-CC
Confidence 9999999 88999 55 6899999999999999999999999 999999999999999999999999 79
Q ss_pred eEEEEEEEEeeceecCCCCCCccccc-HhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcc
Q 013280 207 TEILAYVSQAHNVVLPEDVVDHEMLT-LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV 285 (446)
Q Consensus 207 I~I~s~V~~IG~i~~~~~~~~~~~~~-~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~p~ 285 (446)
|+|.|||++||+|+.... ......+ ++++++|+|||||++++++|+++|+++|++||||||+|||+|+|||+|||+|+
T Consensus 155 I~i~a~v~~iG~i~~~~~-~~~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pv 233 (388)
T 1qxo_A 155 MEIANHVVVFGGKEIDVP-ENLTVAEIKQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYV 233 (388)
T ss_dssp CEEEEEEEEETTEECCCC-SSCCHHHHHHHHHTSTTCCSCGGGHHHHHHHHHHHHHTTCCBCEEEEEEEESCCTTCSCSS
T ss_pred cEEEEEEEEEeCEEcCcc-cccchhhHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCcCCcc
Confidence 999999999999987421 0011223 67899999999999999999999999999999999999999999999999999
Q ss_pred c--CchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccC
Q 013280 286 F--DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPT 363 (446)
Q Consensus 286 f--dkLda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPt 363 (446)
| |||||+||+||||||||||||||+||++++|+|||+||+|+++++++++|+|||+|||+|||||||||+||+|||||
T Consensus 234 f~d~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~tN~aGGI~GGISnG~pIv~r~a~KPt 313 (388)
T 1qxo_A 234 QWDRKLDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTNGQPIVVRGVMKPI 313 (388)
T ss_dssp SGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTSCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCC
T ss_pred cccccchHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeeecCcCccCcccccCCCCcEEEEEEeCCC
Confidence 9 99999999999999999999999999999999999999998765446999999999999999999999999999999
Q ss_pred CcccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccccchhhcC
Q 013280 364 STIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 430 (446)
Q Consensus 364 pSI~~~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~~~~~~~ 430 (446)
|||.+||+|||+++++.+++++||||||++|||+||+|||+||||||++|+++++|+++|++++|+.
T Consensus 314 ~SI~~~q~TVd~~~~e~~~~~~gRhDpCvvprA~pV~EAm~AlvlaD~~L~~~~~d~~~e~~~~~~~ 380 (388)
T 1qxo_A 314 PTLYKPLMSVDIETHEPYKATVERSDPTALPAAGMVMEAVVATVLAQEILEKFSSDNLEELKEAVAK 380 (388)
T ss_dssp SCCSSCEEEECTTTCCEEEECCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHSCCSBHHHHHHHHHH
T ss_pred ccccccccceecCCCEeeeecCCCCCcccccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998864
No 6
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=100.00 E-value=2.7e-148 Score=1126.91 Aligned_cols=364 Identities=35% Similarity=0.499 Sum_probs=336.8
Q ss_pred ceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEE
Q 013280 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 139 (446)
Q Consensus 60 ~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~TtGtPIa~ 139 (446)
||||||||||||++||||||||||||+||+||||.||+| |||||++++|||+|+|+|+||||||+|+||||||++
T Consensus 1 mfr~tT~GESHG~alg~VIdG~PaGl~l~~edIq~eL~R-----RrpG~~r~~t~R~E~D~v~IlSGV~~G~TtGtPI~~ 75 (407)
T 2o11_A 1 MLRWITAGESHGRALVAVVEGMVAGVHVTSADIADQLAR-----RRLGYGRGARMTFERDAVTVLSGIRHGSTLGGPIAI 75 (407)
T ss_dssp CCEEEEECCTTSSEEEEEEESCCBTCBCCHHHHHHHHHH-----HTCCCC---------CCEEEEESEETTEECSSCEEE
T ss_pred CeEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHh-----hCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeEE
Confidence 699999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEeCCCCC------CC---Ccc----ccc----cCCCCCcccccccccccCCCCCCC-chhhHHHHHHHHHHHHHHHHHH
Q 013280 140 FVPNTDQR------GH---DYS----EMS----VAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKIL 201 (446)
Q Consensus 140 ~I~N~D~~------s~---DY~----~~~----~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~~L 201 (446)
+|+|+||+ |+ ||+ +++ +.||||||||||++|||+|||||| |||||||||+||||||||||||
T Consensus 76 ~I~N~D~~~w~~~ms~~~~dy~~~~~~~~~~~~~~pRPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L 155 (407)
T 2o11_A 76 EIGNTEWPKWETVMAADPVDPAELADVARNAPLTRPRPGHADYAGMLKYGFDDARPVLERASARETAARVAAGTVARAFL 155 (407)
T ss_dssp EEECTTHHHHTTTTCSSCCCHHHHHTCGGGCCCCSCCTTSSHHHHHHHHTCSSSHHHHHHHSGGGHHHHHHHHHHHHHHH
T ss_pred EEeccChhhhhhcccccccCcchhhhhhhhcccCCCCCCccchhhHhhcCCcccCCccccchHHHHHHHHHHHHHHHHHH
Confidence 99999999 55 898 555 799999999999999999999999 9999999999999999999999
Q ss_pred hhcCCeEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCc
Q 013280 202 KQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGL 281 (446)
Q Consensus 202 ~~~~GI~I~s~V~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GL 281 (446)
++.+||+|.|||++||+|+....+. ....+++++++|+|||||++++++|+++|+++|++||||||+|||+|+|||+||
T Consensus 156 ~~~~GI~i~a~v~~iG~i~~~~~~~-~~~~~~~~~~~~~~rcpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GL 234 (407)
T 2o11_A 156 RQALGVEVLSHVISIGASAPYEGPP-PRAEDLPAIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGL 234 (407)
T ss_dssp HHHHCCEEEEEEEEETTCCCCCSCC-CCGGGHHHHHHSTTCCSSHHHHHHHHHHHHHHHHHTCCCCEEEEEEEESCCTTC
T ss_pred hhcCCcEEEEEEEEEeCEEcccccc-cchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCCC
Confidence 9845999999999999998642000 023457889999999999999999999999999999999999999999999999
Q ss_pred CCcc--cCchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEE
Q 013280 282 GSPV--FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIA 359 (446)
Q Consensus 282 G~p~--fdkLda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva 359 (446)
|+|+ ||||||+||+||||||||||||||+||++++|+|||+||+|+++++| ++|+|||+|||+|||||||||+||+|
T Consensus 235 G~pv~~f~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~g-~~~~TN~aGGI~GGISnG~pIv~r~a 313 (407)
T 2o11_A 235 GSFTSGDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDG-VVRSTNRAGGLEGGMTNGQPLRVRAA 313 (407)
T ss_dssp SCSSSGGGSHHHHHHHHHHTSTTEEEEEETTHHHHTTSCHHHHSCCCBCCTTS-CBCSCCTTTTEETTEECSSCEEEEEE
T ss_pred CCCcccccchhHHHHHHhcCcCceeeEEeccchhhhhccccccccceeecCCC-ceecCcCccCcccccCCCCcEEEEEE
Confidence 9999 99999999999999999999999999999999999999999875444 99999999999999999999999999
Q ss_pred eccCCcccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccccchhhcC
Q 013280 360 FKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 430 (446)
Q Consensus 360 ~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~~~~~~~ 430 (446)
|||||||.+||+|||+++++.+++++||||||++|||+||+|||+||||||++|+++++|+++|++++|+.
T Consensus 314 ~KPt~SI~~~q~TVd~~~~e~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~d~~~e~~~~~~~ 384 (407)
T 2o11_A 314 MKPISTVPRALATVDLATGDEAVAIHQRSDVCAVPAAGVVVETMVALVLARAALEKFGGDSLAETQRNIAA 384 (407)
T ss_dssp ECCCSCCTTTCEEECTTTCCEEECCCSCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHH
T ss_pred eCCCccccccccceecCCCeeeeecCCCCCceeecchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888764
No 7
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=100.00 E-value=3.9e-147 Score=1116.77 Aligned_cols=365 Identities=36% Similarity=0.530 Sum_probs=298.4
Q ss_pred ceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhcccccCcCCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEE
Q 013280 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 139 (446)
Q Consensus 60 ~~r~ttfGESHG~aig~VIDG~PaGl~i~~edIq~eL~R~~~~~RrpG~~r~~t~R~E~D~veIlSGv~~G~TtGtPIa~ 139 (446)
+|||||||||||++||||||||||||+||+||||.||+| |||||++++|||+|+|+|+||||||+|+||||||++
T Consensus 8 ~fr~tT~GESHG~alg~vIdG~PaGl~l~~edIq~~L~R-----RrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~~ 82 (401)
T 1q1l_A 8 YLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRR-----RQRGYGRGGRMKIEKDTAEILSGVRFGKTLGSPIAL 82 (401)
T ss_dssp SCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHH-----HHTTCC------CCSCCEEEEESEETTEECSSCEEE
T ss_pred eEEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHh-----hCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeEE
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCC-----------ccccccCCCCCcccccccccccCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCe
Q 013280 140 FVPNTDQRGHD-----------YSEMSVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGT 207 (446)
Q Consensus 140 ~I~N~D~~s~D-----------Y~~~~~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~~L~~~~GI 207 (446)
+|+|+||.+|. |+...+.||||||||||++|||++||||| |||||||||+||||||||||||++ +||
T Consensus 83 ~I~N~Dy~~~~~~m~~~~~~~~~~~~~t~pRPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~-~GI 161 (401)
T 1q1l_A 83 FIRNRDWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSE-FGI 161 (401)
T ss_dssp EEECSCC-------------------------------CTTTTTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHT-TTC
T ss_pred EEecCCHHHHHhhccccccccccccccCCCCCCCcchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHHH-CCe
Confidence 99999766531 11222349999999999999999999999 999999999999999999999999 799
Q ss_pred EEEEEEEEeeceecCCC------CCCccccc-HhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCC
Q 013280 208 EILAYVSQAHNVVLPED------VVDHEMLT-LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRG 280 (446)
Q Consensus 208 ~I~s~V~~IG~i~~~~~------~~~~~~~~-~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~G 280 (446)
+|.|||++||+|+.... +.+....+ ++++++|+|||||++++++|+++|+++|++||||||+|||+|+|||+|
T Consensus 162 ~i~a~v~~iG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rcpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~G 241 (401)
T 1q1l_A 162 KIGSFVVSIGQKEVEELKDKSYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPG 241 (401)
T ss_dssp EEEEEEEEETTEECGGGSSGGGGGCHHHHHHHHHHHTTSTTCCSCGGGHHHHHHHHHHHHTTTCCBCEEEEEEEESCCTT
T ss_pred EEEEEEEEEcCEEcccccccccccCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCC
Confidence 99999999999986310 00001223 678899999999999999999999999999999999999999999999
Q ss_pred cCCc-ccCc-hHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEE
Q 013280 281 LGSP-VFDK-LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRI 358 (446)
Q Consensus 281 LG~p-~fdk-Lda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rv 358 (446)
||+| +||| |||+||+||||||||||||||+||++++++|||+||+|+++++++++|+|||+|||+|||||||||+||+
T Consensus 242 LG~pv~fdkrLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~TN~aGGI~GGISnG~pIv~r~ 321 (401)
T 1q1l_A 242 LGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHSNNLGGTEGGITNGMPIVVRV 321 (401)
T ss_dssp CSCSSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTCCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEE
T ss_pred CCCcccccccchHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeeecCcCccCcccccCCCCcEEEEE
Confidence 9999 7999 9999999999999999999999999999999999999987654579999999999999999999999999
Q ss_pred EeccCCcccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhccccccccchhhcC
Q 013280 359 AFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 430 (446)
Q Consensus 359 a~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~l~~~~~~~~~~~~~~~~~ 430 (446)
||||||||.+||+|||+++++.+++++||||||++|||+||+|||+||||||++|+++++|+++|++++|+.
T Consensus 322 a~KPt~SI~~~q~TVd~~~~e~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~d~~~e~~~~~~~ 393 (401)
T 1q1l_A 322 AMKPIPTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASVVGEAMLAIVLADALLEKLGGDFMEEVKKRFED 393 (401)
T ss_dssp EECCCCC------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHH
T ss_pred EeCCCccccccccceecCCCeeeeecCCCCCcccccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998864
No 8
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=74.81 E-value=1.4 Score=36.94 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=23.6
Q ss_pred HHHHHHHhccCCcccEEEeccccccccc
Q 013280 290 EAELAKAMMSLPATKGFEVGSGFAGTFL 317 (446)
Q Consensus 290 da~LA~AlmSIpAVKGVEfG~GF~~a~~ 317 (446)
.+-||+.||.||.||+|-||.-|=....
T Consensus 38 ~SPLA~~LF~i~gVk~Vf~g~dFITVtK 65 (94)
T 2k1h_A 38 QPEFINRLFEIEGVKSIFYVLDFISIDK 65 (94)
T ss_dssp SCHHHHHHHTSTTEEEEEEETTEEEEEE
T ss_pred CCHHHHHhhCCCCeeEEEEeCCEEEEec
Confidence 4679999999999999999987755544
No 9
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=74.16 E-value=1.3 Score=36.94 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=24.2
Q ss_pred HHHHHHHhccCCcccEEEeccccccccc
Q 013280 290 EAELAKAMMSLPATKGFEVGSGFAGTFL 317 (446)
Q Consensus 290 da~LA~AlmSIpAVKGVEfG~GF~~a~~ 317 (446)
.+-||+.||.||.||+|-||.-|=....
T Consensus 38 ~SPLA~~LF~i~gVk~Vf~g~dFITVtK 65 (91)
T 1pqx_A 38 QPAFINDILKVEGVKSIFHVMDFISVDK 65 (91)
T ss_dssp CCHHHHHHHHSTTEEEEEEETTEEEEEE
T ss_pred CCHHHHHhhCCCCeeEEEEeCCEEEEec
Confidence 4779999999999999999988765554
No 10
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=66.28 E-value=1.6 Score=37.38 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=24.6
Q ss_pred hHHHHHHHhccCCcccEEEeccccccccc
Q 013280 289 LEAELAKAMMSLPATKGFEVGSGFAGTFL 317 (446)
Q Consensus 289 Lda~LA~AlmSIpAVKGVEfG~GF~~a~~ 317 (446)
..+-||+.||.||.||+|-||.-|=....
T Consensus 47 ~~SPLA~~LF~i~gVk~Vf~g~dFITVtK 75 (107)
T 2ltm_A 47 FRSPLARQLFRIEGVKSVFFGPDSITVTK 75 (107)
Confidence 34779999999999999999988866644
No 11
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=53.11 E-value=22 Score=36.73 Aligned_cols=73 Identities=22% Similarity=0.403 Sum_probs=45.4
Q ss_pred cCCccccEEEEEEEeCCCCcCCcc-cCchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCC
Q 013280 262 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 340 (446)
Q Consensus 262 ~GDSlGGvve~~v~gvP~GLG~p~-fdkLda~LA~AlmSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 340 (446)
-|.|-|-.+-|++.|||+||= + .+.|...|..- .+|.-----... +.+.+...
T Consensus 10 ~GESHG~alg~vIdG~PaGl~--l~~~dIq~eL~RR--------------------rpG~~r~~t~R~-E~D~v~Il--- 63 (398)
T 4ecd_A 10 AGESHGEALVAMIEGLPAGVR--ISTDDIVSALARR--------------------RLGYGRGARMKF-EQDKVRLL--- 63 (398)
T ss_dssp ECCTTSSEEEEEEECCCBTCB--CCHHHHHHHHHHT--------------------TCCCBCC-------CCCEEEE---
T ss_pred eecCCCCeeEEEEccCCCCCc--cCHHHHHHHHHhc--------------------CCCCCCCCCCCC-CCCceEEE---
Confidence 489999999999999999985 3 34555555442 222111000011 11233333
Q ss_pred CccccccccCCCceEEEEEec
Q 013280 341 SGGIQGGISNGEIINMRIAFK 361 (446)
Q Consensus 341 aGGI~GGISnG~pIv~rva~K 361 (446)
.|+.-|.|+|.||-+.+.=+
T Consensus 64 -SGv~~G~TtGtPI~l~I~N~ 83 (398)
T 4ecd_A 64 -TGVRHGLTLGSPVAIEIANT 83 (398)
T ss_dssp -ESEETTEECSSCEEEEEEC-
T ss_pred -EcccCCCcCCCCeEEEEEcC
Confidence 68889999999999988544
No 12
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=55.68 E-value=3.4 Score=36.04 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.2
Q ss_pred HHHHHHHhc-cCCcccEEEeccccccccc
Q 013280 290 EAELAKAMM-SLPATKGFEVGSGFAGTFL 317 (446)
Q Consensus 290 da~LA~Alm-SIpAVKGVEfG~GF~~a~~ 317 (446)
.+-||++|| .|+.||+|-||.-|=....
T Consensus 60 ~SPLA~~LF~~i~GV~~Vf~g~DFITVtK 88 (119)
T 2ltl_A 60 HSKLAQQIFLQCPGVESLMIGDDFLTINK 88 (119)
Confidence 466999999 9999999999988866655
No 13
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=46.38 E-value=21 Score=33.18 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=29.5
Q ss_pred EEeCCCCcCCcccCchHHHHHHHhc--cCCcccEEEecccccccc
Q 013280 274 VRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGSGFAGTF 316 (446)
Q Consensus 274 v~gvP~GLG~p~fdkLda~LA~Alm--SIpAVKGVEfG~GF~~a~ 316 (446)
|.|||.-.| -++.+|+.|+-.=| ++| |-=|-|+.||.++-
T Consensus 94 VIgVP~~~~--~l~G~dsLlSivqmP~Gvp-VatV~Id~~~nAa~ 135 (183)
T 1o4v_A 94 VIGVPVKTS--TLNGLDSLFSIVQMPGGVP-VATVAINNAKNAGI 135 (183)
T ss_dssp EEEEEECCT--TTTTHHHHHHHHTCCTTCC-CEECCTTCHHHHHH
T ss_pred EEEeeCCCC--CCCcHHHHHHHhcCCCCCe-eEEEecCCchHHHH
Confidence 344555444 38899999999999 888 87888877776654
No 14
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=27.35 E-value=25 Score=36.19 Aligned_cols=83 Identities=19% Similarity=0.250 Sum_probs=50.3
Q ss_pred eeeecccCCeeeEEeecCCCCccCCH---HHHHHHhcccc---------------cCcCCCCCCCCCCCCCCCC-eEEEE
Q 013280 64 TTFGESHGGGVGCIIDGCPPRIPLSE---ADMQVDLDRRI---------------VVSRRPGQSRITTPRKETD-TCKIY 124 (446)
Q Consensus 64 ttfGESHG~aig~VIDG~PaGl~i~~---edIq~eL~R~~---------------~~~RrpG~~r~~t~R~E~D-~veIl 124 (446)
---|.|-|..|-||+.|||+||==-. +.|+.+|..-+ ...+++|.---.-...+.+ .+.-.
T Consensus 208 k~~GDS~GGvvevv~~gvP~GLG~pvf~d~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~ 287 (388)
T 1qxo_A 208 KRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRR 287 (388)
T ss_dssp HHTTCCBCEEEEEEEESCCTTCSCSSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTSCCEEEETTTEEEES
T ss_pred HHhCCCCceEEEEEEecCCCCcCCcccccccchHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeeec
Confidence 34699999999999999999985432 35777776421 1123444211101000111 22222
Q ss_pred ----ecccCCcccCCcEEEEEeCCCC
Q 013280 125 ----SGVSEGVTTGTPIHVFVPNTDQ 146 (446)
Q Consensus 125 ----SGv~~G~TtGtPIa~~I~N~D~ 146 (446)
.|+..|.|+|.||-+.+-=+-.
T Consensus 288 tN~aGGI~GGISnG~pIv~r~a~KPt 313 (388)
T 1qxo_A 288 TNNLGGFEGGMTNGQPIVVRGVMKPI 313 (388)
T ss_dssp CCTTTTEETTEECSSCEEEEEEECCC
T ss_pred CcCccCcccccCCCCcEEEEEEeCCC
Confidence 4778999999999998764433
No 15
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=25.88 E-value=27 Score=36.03 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=51.2
Q ss_pred EeeeecccCCeeeEEeecCCCCccC--CHHH-HHHHhcccc---------------cCcCCCCCCCCCCCCCCCC-eEEE
Q 013280 63 VTTFGESHGGGVGCIIDGCPPRIPL--SEAD-MQVDLDRRI---------------VVSRRPGQSRITTPRKETD-TCKI 123 (446)
Q Consensus 63 ~ttfGESHG~aig~VIDG~PaGl~i--~~ed-Iq~eL~R~~---------------~~~RrpG~~r~~t~R~E~D-~veI 123 (446)
..--|.|-|..|-||+.|||+||== ..|. |+.+|..-+ ...+++|.---.-...+.+ .+.-
T Consensus 220 ak~~GDS~GGvvevv~~gvP~GLG~pv~fdkrLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~ 299 (401)
T 1q1l_A 220 VKEKGESLGGVFEVFALNVPPGLGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFR 299 (401)
T ss_dssp HHTTTCCBCEEEEEEEESCCTTCSCSSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTCCCEEEETTTEEEE
T ss_pred HHHhCCCCceEEEEEEecCCCCCCCcccccccchHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeee
Confidence 3456999999999999999999953 4677 888776521 1123444211101000111 2211
Q ss_pred ----EecccCCcccCCcEEEEEeCC
Q 013280 124 ----YSGVSEGVTTGTPIHVFVPNT 144 (446)
Q Consensus 124 ----lSGv~~G~TtGtPIa~~I~N~ 144 (446)
-.|+..|.|+|.||-+.+-=+
T Consensus 300 ~TN~aGGI~GGISnG~pIv~r~a~K 324 (401)
T 1q1l_A 300 HSNNLGGTEGGITNGMPIVVRVAMK 324 (401)
T ss_dssp SCCTTTTEETTEECSSCEEEEEEEC
T ss_pred cCcCccCcccccCCCCcEEEEEEeC
Confidence 247789999999999987544
No 16
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=23.88 E-value=84 Score=28.98 Aligned_cols=87 Identities=22% Similarity=0.235 Sum_probs=51.9
Q ss_pred HHHHHhhcCCeEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCcc----------
Q 013280 197 AKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSV---------- 266 (446)
Q Consensus 197 Ak~~L~~~~GI~I~s~V~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSl---------- 266 (446)
|.+.|++ |||...-.|.+++.. -++|.+++.++.++|-.+
T Consensus 26 a~~~L~~-~gi~~ev~V~SaHR~-----------------------------p~~~~~~~~~a~~~g~~ViIa~AG~aa~ 75 (174)
T 3lp6_A 26 AAAALAE-FDIPAEVRVVSAHRT-----------------------------PEAMFSYARGAAARGLEVIIAGAGGAAH 75 (174)
T ss_dssp HHHHHHH-TTCCEEEEECCTTTC-----------------------------HHHHHHHHHHHHHHTCCEEEEEEESSCC
T ss_pred HHHHHHH-cCCCEEEEEECCCCC-----------------------------HHHHHHHHHHHHhCCCCEEEEecCchhh
Confidence 5667887 699865555433321 345667778888777541
Q ss_pred -----ccEEEEEEEeCCCCcCCcccCchHHHHHHHhccCCc--ccEEEecccccccc
Q 013280 267 -----GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPA--TKGFEVGSGFAGTF 316 (446)
Q Consensus 267 -----GGvve~~v~gvP~GLG~p~fdkLda~LA~AlmSIpA--VKGVEfG~GF~~a~ 316 (446)
.|...+=|.|||.-.| .++.+|+.|+-.-|- ++ |-=|-||.||.++-
T Consensus 76 LpgvvA~~t~~PVIgVP~~~~--~l~G~daLlS~vqmp-~GvpVatV~I~~~~nAa~ 129 (174)
T 3lp6_A 76 LPGMVAAATPLPVIGVPVPLG--RLDGLDSLLSIVQMP-AGVPVATVSIGGAGNAGL 129 (174)
T ss_dssp HHHHHHHHCSSCEEEEEECCS--SGGGHHHHHHHHCCC-TTCCCEECCTTCHHHHHH
T ss_pred hHHHHHhccCCCEEEeeCCCC--CCCCHHHHHHHhhCC-CCCeeEEEEcCcchHHHH
Confidence 1111222445565444 278899999987773 33 34467777776654
No 17
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=23.53 E-value=68 Score=29.55 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=24.9
Q ss_pred cCceEEeeeecccCCeeeEEeecCCC-CccCCHHHHH
Q 013280 58 GTYFRVTTFGESHGGGVGCIIDGCPP-RIPLSEADMQ 93 (446)
Q Consensus 58 G~~~r~ttfGESHG~aig~VIDG~Pa-Gl~i~~edIq 93 (446)
-+-+.+.++=-..|.+|-+||||.+| |++= ++|++
T Consensus 125 ANPlqVIVaet~qGRgvlGVvDG~~P~GVE~-eed~~ 160 (173)
T 1rlh_A 125 ANPLQIIVYKGERGNGVLGVIDGYSPVGVES-DADIE 160 (173)
T ss_dssp SSCEEEEEEECSSSEEEEEEEESCCCCSCCC------
T ss_pred CCCEEEEEEEcCCCcEEEEEecCCCCCCccC-HHHHH
Confidence 45688999888899999999999865 6664 44443
No 18
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=23.51 E-value=2.7e+02 Score=21.95 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhccCCcccEEEecc
Q 013280 245 DPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGS 310 (446)
Q Consensus 245 d~~~~~~m~~~I~~ar~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~AlmSIpAVKGVEfG~ 310 (446)
-+|+.+++.+.|++|...|-+ .|.+ + -|-|+ ..|...+-+.|-..|.|+.+..+.
T Consensus 14 ~~eA~~~l~~fl~~a~~~g~~---~v~I-I----HGkG~---GvLr~~V~~~L~~~~~V~~f~~a~ 68 (83)
T 2zqe_A 14 VAEALLEVDQALEEARALGLS---TLRL-L----HGKGT---GALRQAIREALRRDKRVESFADAP 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS---EEEE-E----CCSTT---SHHHHHHHHHHHHCTTEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCCC---EEEE-E----ECCCc---hHHHHHHHHHHhcCCceeEEEEcC
Confidence 467888999999999999976 2333 3 45564 379999999999999999999864
No 19
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=22.36 E-value=36 Score=35.25 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=50.8
Q ss_pred EeeeecccCCeeeEEeecCCCCccCCH---HHHHHHhccccc---------------CcCCCCCCCCCCCCCCCCeE---
Q 013280 63 VTTFGESHGGGVGCIIDGCPPRIPLSE---ADMQVDLDRRIV---------------VSRRPGQSRITTPRKETDTC--- 121 (446)
Q Consensus 63 ~ttfGESHG~aig~VIDG~PaGl~i~~---edIq~eL~R~~~---------------~~RrpG~~r~~t~R~E~D~v--- 121 (446)
.---|.|-|..|-||+.|||+||==-. +.|+.+|..-+. ..+++|.---.-...+.+.+
T Consensus 212 ak~~GDS~GGvvevv~~gvP~GLG~pv~~f~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~g~~~~ 291 (407)
T 2o11_A 212 AKKDGDTLGGVVEAVALGLPVGLGSFTSGDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDGVVRS 291 (407)
T ss_dssp HHHHTCCCCEEEEEEEESCCTTCSCSSSGGGSHHHHHHHHHHTSTTEEEEEETTHHHHTTSCHHHHSCCCBCCTTSCBCS
T ss_pred HHhcCCCCceEEEEEEecCCCCCCCCcccccchhHHHHHHhcCcCceeeEEeccchhhhhccccccccceeecCCCceec
Confidence 345699999999999999999996544 668877764210 11233311000000011111
Q ss_pred -EEEecccCCcccCCcEEEEEeCCC
Q 013280 122 -KIYSGVSEGVTTGTPIHVFVPNTD 145 (446)
Q Consensus 122 -eIlSGv~~G~TtGtPIa~~I~N~D 145 (446)
.--.|+..|.|+|.||-+.+-=+-
T Consensus 292 TN~aGGI~GGISnG~pIv~r~a~KP 316 (407)
T 2o11_A 292 TNRAGGLEGGMTNGQPLRVRAAMKP 316 (407)
T ss_dssp CCTTTTEETTEECSSCEEEEEEECC
T ss_pred CcCccCcccccCCCCcEEEEEEeCC
Confidence 112688899999999999875443
Done!