RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013280
(446 letters)
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A
{Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Length = 382
Score = 660 bits (1705), Expect = 0.0
Identities = 198/373 (53%), Positives = 248/373 (66%), Gaps = 13/373 (3%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
S FG FRVTT+GESH VGCI+DG PP + L+EAD+Q L RR RPGQS+++TP
Sbjct: 2 STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRR-----RPGQSKLSTP 56
Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVR 174
R E D +I SG G T GTPI + + N DQR HDYS+M RPSHAD TY KYG++
Sbjct: 57 RDEKDRVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIK 116
Query: 175 SVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLD 234
+ GGGR+SARETIGRVA GA+A+K L Q + EI+A+V+Q + + D D E L
Sbjct: 117 ASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLL 176
Query: 235 Q-------VESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFD 287
+RCPD A M+ I+ R DS+GGVVTC+VRN P GLG P FD
Sbjct: 177 NTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFD 236
Query: 288 KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTD-EFGNIRTRTNRSGGIQG 346
KLEA LA AM+S+PA+KGFE+GSGF G + GS+HND FY + E +RT+TN SGG+QG
Sbjct: 237 KLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQG 296
Query: 347 GISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVAL 406
GISNGE I + FK +TI ++Q T T + +E L A+GRHDP V PRA+P+VEAM AL
Sbjct: 297 GISNGENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTAL 356
Query: 407 VLMDQLMAQHAQC 419
VL D L+ Q A+
Sbjct: 357 VLADALLIQKARD 369
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta
tetrameric PROT protein structure initiative; 2.80A
{Campylobacter jejuni} SCOP: d.258.1.1
Length = 370
Score = 640 bits (1654), Expect = 0.0
Identities = 142/365 (38%), Positives = 199/365 (54%), Gaps = 15/365 (4%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
+ FGT + T+FGESHG VGCIIDG P + E +Q +LD+R G S+ TP
Sbjct: 2 NTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKR------KGGSKFATP 55
Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVR 174
RKE+D ++ SGV EG TTG PI + V N + DY + +RP+HAD TY KYG+R
Sbjct: 56 RKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIR 115
Query: 175 SVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLD 234
+GGGRSSARE++ RVA GAVA +L++F + + V V + E +
Sbjct: 116 DHRGGGRSSARESVARVAGGAVAAMLLREF-DICVQSGVFGVGTFVSN---LKEEEFDFE 171
Query: 235 QVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELA 294
+ + + C DP+ I R DSVG V V GLG ++DKL+++LA
Sbjct: 172 FAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLA 231
Query: 295 KAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEII 354
A+M + A K E+G G + + GS +ND + + +N SGGI GGISNGE +
Sbjct: 232 HALMGINAVKAVEIGEGINASKMRGSCNNDALK-----DGKFLSNHSGGILGGISNGENL 286
Query: 355 NMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMA 414
++ FKPT +I KQ ++ + + +GRHDPCV R + AMV LVL D L+
Sbjct: 287 ILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGSVVASAMVRLVLADCLLL 346
Query: 415 QHAQC 419
+
Sbjct: 347 NASAN 351
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET:
FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB:
1umf_A
Length = 365
Score = 627 bits (1619), Expect = 0.0
Identities = 137/370 (37%), Positives = 198/370 (53%), Gaps = 24/370 (6%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
+ G + R+TTFGESHG +G ++DG P I + A ++ ++ RR + G++ TP
Sbjct: 2 NTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRR-----QGGRNVFITP 56
Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVR 174
RKE D +I SGV E +TGTPI + N R DY + +RPSHAD TY KYG+R
Sbjct: 57 RKEDDKVEITSGVFEDFSTGTPIGFLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIR 116
Query: 175 SVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLD 234
+GGGRSSARE+ RVA GA AK +L++ G + + + + + +
Sbjct: 117 DFRGGGRSSARESAIRVAAGAFAKMLLREI-GIVCESGIIEIGG-------IKAKNYDFN 168
Query: 235 QVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNC------PRGLGSPVFDK 288
+ + D E E AI DS+GGV R+ P GLG ++ K
Sbjct: 169 HALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAK 228
Query: 289 LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGI 348
L+A++A+AMM L K E+G G + L GSE+ND +NRSGG+ GG+
Sbjct: 229 LDAKIAEAMMGLNGVKAVEIGKGVESSLLKGSEYNDLMDQK-----GFLSNRSGGVLGGM 283
Query: 349 SNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVL 408
SNGE I +R+ FKPT +I + Q T+ E E + +GRHDPC+ R + E+++ALVL
Sbjct: 284 SNGEEIIVRVHFKPTPSIFQPQRTIDINGNECECLLKGRHDPCIAIRGSVVCESLLALVL 343
Query: 409 MDQLMAQHAQ 418
D ++
Sbjct: 344 ADMVLLNLTS 353
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A
{Bifidobacterium longum subsp}
Length = 398
Score = 575 bits (1485), Expect = 0.0
Identities = 123/392 (31%), Positives = 183/392 (46%), Gaps = 24/392 (6%)
Query: 58 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKE 117
R T GESHG + +I+G P + +S D+ L RR R G R + E
Sbjct: 2 NAMLRWQTAGESHGEALVAMIEGLPAGVRISTDDIVSALARR-----RLGYGRGARMKFE 56
Query: 118 TDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYS----------------EMSVAYRPS 161
D ++ +GV G+T G+P+ + + NT+ RP
Sbjct: 57 QDKVRLLTGVRHGLTLGSPVAIEIANTEWPKWTEVMSADALDHDLPREGRNAPLSRPRPG 116
Query: 162 HADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVV 220
HAD T KYG + RSSARET RVA G VAK+ L Q G +A+V V
Sbjct: 117 HADLTGMRKYGFDDARPVLERSSARETASRVALGEVAKQFLDQAFGIRTVAHVVALGGVQ 176
Query: 221 LPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRG 280
D+ L+ ++++ VR D E ++I I+ + D++GGV+ + P G
Sbjct: 177 TNPDLPLPTPDDLEALDASPVRTLDKEAEVRIIERINEAKKAADTLGGVIEVLAYGVPAG 236
Query: 281 LGSPVFD--KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRT 338
+G+ V +L+A LA A+M + A KG E+G GF GS+ +DE + G I +
Sbjct: 237 IGTYVESDRRLDAALASAIMGIQAFKGVEIGDGFLAASRPGSQAHDEIVVNADGRIDRLS 296
Query: 339 NRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVP 398
NR+GGI+GG+SNG++I +R A KP +I + TV E+ R D VP A
Sbjct: 297 NRAGGIEGGMSNGQVIRVRGAMKPIPSIPKALRTVDVLTGESAQAINQRSDSTAVPAASV 356
Query: 399 MVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 430
+ EAMV L L + + + +L+
Sbjct: 357 VAEAMVRLTLAKYALDKFGGDSVAETRRNLES 388
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium
tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Length = 407
Score = 563 bits (1454), Expect = 0.0
Identities = 127/381 (33%), Positives = 183/381 (48%), Gaps = 27/381 (7%)
Query: 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDT 120
R T GESHG + +++G + ++ AD+ L RR R G R E D
Sbjct: 2 LRWITAGESHGRALVAVVEGMVAGVHVTSADIADQLARR-----RLGYGRGARMTFERDA 56
Query: 121 CKIYSGVSEGVTTGTPIHVFVPNTDQRGH---------DYSEMS--------VAYRPSHA 163
+ SG+ G T G PI + + NT+ D +E++ RP HA
Sbjct: 57 VTVLSGIRHGSTLGGPIAIEIGNTEWPKWETVMAADPVDPAELADVARNAPLTRPRPGHA 116
Query: 164 DATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLP 222
D +KYG + R+SARET RVA G VA+ L+Q G E+L++V
Sbjct: 117 DYAGMLKYGFDDARPVLERASARETAARVAAGTVARAFLRQALGVEVLSHVISIGASAPY 176
Query: 223 EDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLG 282
E L ++++ VR D MIA I+A + GD++GGVV + P GLG
Sbjct: 177 EGP-PPRAEDLPAIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGLG 235
Query: 283 SPVF--DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 340
S +L+++LA A+M + A KG E+G GF GS +DE Y G + TNR
Sbjct: 236 SFTSGDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDG-VVRSTNR 294
Query: 341 SGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMV 400
+GG++GG++NG+ + +R A KP ST+ R TV + + R D C VP A +V
Sbjct: 295 AGGLEGGMTNGQPLRVRAAMKPISTVPRALATVDLATGDEAVAIHQRSDVCAVPAAGVVV 354
Query: 401 EAMVALVLMDQLMAQHAQCHL 421
E MVALVL + + L
Sbjct: 355 ETMVALVLARAALEKFGGDSL 375
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics,
PSI, protein structure initiative, midwest center for
structural genomics; 2.05A {Aquifex aeolicus} SCOP:
d.258.1.1
Length = 401
Score = 562 bits (1450), Expect = 0.0
Identities = 132/397 (33%), Positives = 190/397 (47%), Gaps = 27/397 (6%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
Y R T GESHG G+ I++G P +PLSE ++ +L RR + G R
Sbjct: 3 HMSLRYLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRR-----QRGYGRGGRM 57
Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDY-----------SEMSVAYRPSHA 163
+ E DT +I SGV G T G+PI +F+ N D RP HA
Sbjct: 58 KIEKDTAEILSGVRFGKTLGSPIALFIRNRDWENWKEKMAIEGEPSPSVVPFTRPRPGHA 117
Query: 164 DATYDMKYGVRSVQG-GGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLP 222
D + +KY R ++ R+SARET RVA GAV KK L +F G +I ++V +
Sbjct: 118 DLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSEF-GIKIGSFVVSIGQKEVE 176
Query: 223 EDVVDHEMLT-------LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVR 275
E ++ E + +R P PE E+ ID V+ +G+S+GGV
Sbjct: 177 ELKDKSYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFAL 236
Query: 276 NCPRGLGSPVF--DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGN 333
N P GLGS + +++ +A+AMMS+ A KG E+G GF GS+ +DE E
Sbjct: 237 NVPPGLGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKG 296
Query: 334 IRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVV 393
+N GG +GGI+NG I +R+A KP T+ +V E KE + R D V
Sbjct: 297 YFRHSNNLGGTEGGITNGMPIVVRVAMKPIPTLKNPLRSVDIETKEEMKAGKERTDIVAV 356
Query: 394 PRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 430
P A + EAM+A+VL D L+ + + + +
Sbjct: 357 PAASVVGEAMLAIVLADALLEKLGGDFMEEVKKRFED 393
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate,
anti-infective, lyase; HET: FMN EPS; 2.00A
{Streptococcus pneumoniae} SCOP: d.258.1.1
Length = 388
Score = 545 bits (1406), Expect = 0.0
Identities = 125/385 (32%), Positives = 181/385 (47%), Gaps = 22/385 (5%)
Query: 62 RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTC 121
R T GESHG + II+G P +PL+ D+ DL RR + G R + E D
Sbjct: 2 RYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRR-----QGGYGRGGRMKIENDQV 56
Query: 122 KIYSGVSEGVTTGTPIHVFVPNTDQRG-HDYSEMS------------VAYRPSHADATYD 168
SGV G TTG PI + V N D + D RP HAD
Sbjct: 57 VFTSGVRHGKTTGAPITMDVINKDHQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGG 116
Query: 169 MKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVD 227
+KY ++ RSSARET RVA GAVAK++L + EI +V +
Sbjct: 117 IKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAEL-DMEIANHVVVFGGKEIDVPENL 175
Query: 228 HEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV-- 285
+ + V + E +++ ID ++ GD++GGVV +V P GLGS V
Sbjct: 176 TVAEIKQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQW 235
Query: 286 FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQ 345
KL+A LA+A++S+ A KG E G GF + GS+ DE + RTN GG +
Sbjct: 236 DRKLDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFE 295
Query: 346 GGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVA 405
GG++NG+ I +R KP T+ + +V E E R DP +P A ++EA+VA
Sbjct: 296 GGMTNGQPIVVRGVMKPIPTLYKPLMSVDIETHEPYKATVERSDPTALPAAGMVMEAVVA 355
Query: 406 LVLMDQLMAQHAQCHLFPINPDLQG 430
VL +++ + + +L + +
Sbjct: 356 TVLAQEILEKFSSDNLEELKEAVAK 380
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.003
Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 56/219 (25%)
Query: 226 VDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSP- 284
+D E +I+ + + + D V+ D +++ + S
Sbjct: 7 MDFETGEHQYQYKDIL----SVFEDAFVDNFDCKDVQ-DMPKSILS--KEEIDHIIMSKD 59
Query: 285 -------VFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTR 337
+F L +K E+ F L N +F I+T
Sbjct: 60 AVSGTLRLFWTLL------------SKQEEMVQKFVEEVL---RINYKFLMSP---IKTE 101
Query: 338 TNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETEL---IARGRHDPCVVP 394
Q + I R + + K N V+R + +L + R V+
Sbjct: 102 QR-----QPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVL- 154
Query: 395 RAVPMVEAM--------VALVLMDQLMAQHAQCHLFPIN 425
++ + V + + +F +N
Sbjct: 155 -----IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.22
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 428 LQGTMKL--PELEPAPA 442
LQ ++KL + APA
Sbjct: 25 LQASLKLYAD--DSAPA 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.47
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 45/117 (38%)
Query: 247 EY------AEKMI--AAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM 298
EY A+ M + ++ V RG ++ V PR EL ++
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAV-------PRD-----------ELGRSNY 1807
Query: 299 SLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIIN 355
+ A V + F S+ ++ + G R+G + EI+N
Sbjct: 1808 GMIAINPGRVAASF-------SQEALQYVVERVG------KRTGWLV------EIVN 1845
>1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.61A
{Clostridium acetobutylicum} SCOP: c.23.10.7
Length = 290
Score = 29.0 bits (64), Expect = 3.5
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 235 QVESNIVRCPDPEYAEKMIAAIDAVRVRGDS-----VGGVVTCIVRNCPRGLGSPVFDKL 289
Q ES+ + Y +K++ I+A+R + + G + + G G ++ +
Sbjct: 118 QGESDSLNGNYKVYYKKLLLIIEALRKELNVPDIPIIIGGLGDFLGKERFGKGCTEYNFI 177
Query: 290 EAELAKAMMSLPAT 303
EL K
Sbjct: 178 NKELQKFAFEQDNC 191
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 27.6 bits (62), Expect = 9.7
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 11/41 (26%)
Query: 120 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRP 160
T K++S TG + GH S R
Sbjct: 140 TLKVWS-----AVTGKCLRTL------VGHTGGVWSSQMRD 169
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0816 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,906,991
Number of extensions: 437571
Number of successful extensions: 898
Number of sequences better than 10.0: 1
Number of HSP's gapped: 851
Number of HSP's successfully gapped: 17
Length of query: 446
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 349
Effective length of database: 3,993,456
Effective search space: 1393716144
Effective search space used: 1393716144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)