RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013280
(446 letters)
>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 371
Score = 413 bits (1063), Expect = e-144
Identities = 199/373 (53%), Positives = 254/373 (68%), Gaps = 13/373 (3%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
S FG FRVTT+GESH VGCI+DG PP + L+EAD+Q L RR RPGQS+++TP
Sbjct: 2 STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRR-----RPGQSKLSTP 56
Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVR 174
R E D +I SG G T GTPI + + N DQR HDYS+M RPSHAD TY KYG++
Sbjct: 57 RDEKDRVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIK 116
Query: 175 SVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEM---- 230
+ GGGR+SARETIGRVA GA+A+K L Q + EI+A+V+Q + + D D E
Sbjct: 117 ASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLL 176
Query: 231 --LTLDQVES-NIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFD 287
+T ++V+S +RCPD A M+ I+ R DS+GGVVTC+VRN P GLG P FD
Sbjct: 177 NTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFD 236
Query: 288 KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEF-GNIRTRTNRSGGIQG 346
KLEA LA AM+S+PA+KGFE+GSGF G + GS+HND FY ++ +RT+TN SGG+QG
Sbjct: 237 KLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQG 296
Query: 347 GISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVAL 406
GISNGE I + FK +TI ++Q T T + +E L A+GRHDP V PRA+P+VEAM AL
Sbjct: 297 GISNGENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTAL 356
Query: 407 VLMDQLMAQHAQC 419
VL D L+ Q A+
Sbjct: 357 VLADALLIQKARD 369
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus
[TaxId: 63363]}
Length = 397
Score = 393 bits (1011), Expect = e-135
Identities = 132/383 (34%), Positives = 190/383 (49%), Gaps = 27/383 (7%)
Query: 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETD 119
Y R T GESHG G+ I++G P +PLSE ++ +L RR + G R + E D
Sbjct: 4 YLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRR-----QRGYGRGGRMKIEKD 58
Query: 120 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDY-----------SEMSVAYRPSHADATYD 168
T +I SGV G T G+PI +F+ N D RP HAD +
Sbjct: 59 TAEILSGVRFGKTLGSPIALFIRNRDWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGG 118
Query: 169 MKYGVRSVQG-GGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPE---- 223
+KY R ++ R+SARET RVA GAV KK L +F G +I ++V + E
Sbjct: 119 IKYNQRDLRNILERASARETAARVAVGAVCKKFLSEF-GIKIGSFVVSIGQKEVEELKDK 177
Query: 224 ---DVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRG 280
+ + ++ E + +R P PE E+ ID V+ +G+S+GGV N P G
Sbjct: 178 SYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPG 237
Query: 281 LGSPVF--DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRT 338
LGS + +++ +A+AMMS+ A KG E+G GF GS+ +DE E +
Sbjct: 238 LGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHS 297
Query: 339 NRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVP 398
N GG +GGI+NG I +R+A KP T+ +V E KE + R D VP A
Sbjct: 298 NNLGGTEGGITNGMPIVVRVAMKPIPTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASV 357
Query: 399 MVEAMVALVLMDQLMAQHAQCHL 421
+ EAM+A+VL D L+ + +
Sbjct: 358 VGEAMLAIVLADALLEKLGGDFM 380
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 388
Score = 387 bits (994), Expect = e-133
Identities = 124/379 (32%), Positives = 180/379 (47%), Gaps = 22/379 (5%)
Query: 62 RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTPRKETDTC 121
R T GESHG + II+G P +PL+ D+ DL RR + G R + E D
Sbjct: 2 RYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRR-----QGGYGRGGRMKIENDQV 56
Query: 122 KIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMS-------------VAYRPSHADATYD 168
SGV G TTG PI + V N D + + RP HAD
Sbjct: 57 VFTSGVRHGKTTGAPITMDVINKDHQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGG 116
Query: 169 MKYGVRSVQ-GGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVD 227
+KY ++ RSSARET RVA GAVAK++L + EI +V +
Sbjct: 117 IKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAEL-DMEIANHVVVFGGKEIDVPENL 175
Query: 228 HEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF- 286
+ + V + E +++ ID ++ GD++GGVV +V P GLGS V
Sbjct: 176 TVAEIKQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQW 235
Query: 287 -DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQ 345
KL+A LA+A++S+ A KG E G GF + GS+ DE + RTN GG +
Sbjct: 236 DRKLDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFE 295
Query: 346 GGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVA 405
GG++NG+ I +R KP T+ + +V E E R DP +P A ++EA+VA
Sbjct: 296 GGMTNGQPIVVRGVMKPIPTLYKPLMSVDIETHEPYKATVERSDPTALPAAGMVMEAVVA 355
Query: 406 LVLMDQLMAQHAQCHLFPI 424
VL +++ + + +L +
Sbjct: 356 TVLAQEILEKFSSDNLEEL 374
>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter
jejuni [TaxId: 197]}
Length = 360
Score = 381 bits (981), Expect = e-131
Identities = 142/364 (39%), Positives = 197/364 (54%), Gaps = 15/364 (4%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
+ FGT + T+FGESHG VGCIIDG P + E +Q +LD+R + G S+ TP
Sbjct: 2 NTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKR-----KGG-SKFATP 55
Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVR 174
RKE+D ++ SGV EG TTG PI + V N + DY + +RP+HAD TY KYG+R
Sbjct: 56 RKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIR 115
Query: 175 SVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLD 234
+GGGRSSARE++ RVA GAVA +L++F V + E +
Sbjct: 116 DHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFG----VGTFVSNLKEEEFDFE 171
Query: 235 QVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELA 294
+ + + C DP+ I R DSVG V V GLG ++DKL+++LA
Sbjct: 172 FAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLA 231
Query: 295 KAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEII 354
A+M + A K E+G G + + GS +ND +F +N SGGI GGISNGE +
Sbjct: 232 HALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKF-----LSNHSGGILGGISNGENL 286
Query: 355 NMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMA 414
++ FKPT +I KQ ++ + + +GRHDPCV R + AMV LVL D L+
Sbjct: 287 ILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGSVVASAMVRLVLADCLLL 346
Query: 415 QHAQ 418
+
Sbjct: 347 NASA 350
>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter
pylori [TaxId: 210]}
Length = 365
Score = 382 bits (981), Expect = e-131
Identities = 137/370 (37%), Positives = 195/370 (52%), Gaps = 24/370 (6%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRIVVSRRPGQSRITTP 114
+ G + R+TTFGESHG +G ++DG P I + A ++ ++ RR + G++ TP
Sbjct: 2 NTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRR-----QGGRNVFITP 56
Query: 115 RKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVR 174
RKE D +I SGV E +TGTPI + N R DY + +RPSHAD TY KYG+R
Sbjct: 57 RKEDDKVEITSGVFEDFSTGTPIGFLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIR 116
Query: 175 SVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLD 234
+GGGRSSARE+ RVA GA AK +L++ + + +
Sbjct: 117 DFRGGGRSSARESAIRVAAGAFAKMLLREIGIVCESGIIEIGGI--------KAKNYDFN 168
Query: 235 QVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNC------PRGLGSPVFDK 288
+ + D E E AI DS+GGV R+ P GLG ++ K
Sbjct: 169 HALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAK 228
Query: 289 LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGI 348
L+A++A+AMM L K E+G G + L GSE+ND F +NRSGG+ GG+
Sbjct: 229 LDAKIAEAMMGLNGVKAVEIGKGVESSLLKGSEYNDLMDQKGF-----LSNRSGGVLGGM 283
Query: 349 SNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVL 408
SNGE I +R+ FKPT +I + Q T+ E E + +GRHDPC+ R + E+++ALVL
Sbjct: 284 SNGEEIIVRVHFKPTPSIFQPQRTIDINGNECECLLKGRHDPCIAIRGSVVCESLLALVL 343
Query: 409 MDQLMAQHAQ 418
D ++
Sbjct: 344 ADMVLLNLTS 353
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella
flexneri [TaxId: 623]}
Length = 264
Score = 29.5 bits (65), Expect = 0.69
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 292 ELAKAMMSLPATKGFEVG-SGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQ 345
L KA+ A E + E D G++ R N S G +
Sbjct: 4 SLLKALSEADAIASSEQEVRQILLEEA--ARLQKEVRFDGLGSVLIRLNESTGPK 56
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 27.3 bits (59), Expect = 3.6
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 213 VSQAHNVVLPEDVVDHEMLTLDQVESNI 240
+ + +V P D+V+ E++ D V+ N+
Sbjct: 285 LERHIDVFAPNDIVNEELINNDHVDDNL 312
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 27.5 bits (59), Expect = 3.9
Identities = 11/65 (16%), Positives = 15/65 (23%), Gaps = 3/65 (4%)
Query: 254 AAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFA 313
A A+ GD C P+ D + +L K L
Sbjct: 17 EARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKF---LGCDVARVTNGARE 73
Query: 314 GTFLT 318
F
Sbjct: 74 AKFAV 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,626,668
Number of extensions: 76536
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 13
Length of query: 446
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,199,356
Effective search space: 429369448
Effective search space used: 429369448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)