BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013281
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 282/414 (68%), Positives = 355/414 (85%), Gaps = 3/414 (0%)
Query: 35 PP--ARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLK 92
PP ++ GRK+RK GP A +LP + P ++CKL+LL++ERIKD+LL+EEEFV+N E LK
Sbjct: 25 PPVQSKFGRKKRK-GGPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSEILK 83
Query: 93 PQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEP 152
P E+K EE++ +++++RG+P+S+G LEE+ID++HAIV+S P+YYV ILSFVDK+ LEP
Sbjct: 84 PFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEP 143
Query: 153 GCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLT 212
GC++L+H+K +S+VG+LQD+ DPMVSVMK++K+P ESY+DIGGL++QIQEIKE+VELPLT
Sbjct: 144 GCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLT 203
Query: 213 HPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKL 272
HPELYE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLR+VGSELIQKYLGDGP+L
Sbjct: 204 HPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRL 263
Query: 273 VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332
R++F+VA + +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFD RGDVK
Sbjct: 264 CRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVK 323
Query: 333 VILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMT 392
VI+ATN+IE+LDPAL+RPGRIDRKI F PD+ T+++I IHTS+M L++DVNLE V T
Sbjct: 324 VIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTT 383
Query: 393 KDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 446
KD+ SGADI+A+CTEAGLLALRERRM+VT DF E EGLY+
Sbjct: 384 KDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEGLYL 437
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 358 bits (919), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 180/366 (49%), Positives = 260/366 (71%), Gaps = 5/366 (1%)
Query: 62 SKCKLRLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 120
S +L KLE+ + L ++E+++ +++R LK + ++A+E+ V ++ P+ +G E
Sbjct: 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEE---VKRIQSVPLVIGQFLE 101
Query: 121 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 180
ID+N IVSS+ G Y V ILS +D++ L+P ++ +H ++V +L + D +SVM
Sbjct: 102 PIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVM 161
Query: 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240
+ P +YAD+GGLD Q QEI+EAVELPL +LYE IGI PP+GV+LYG PGTGKT+
Sbjct: 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTM 221
Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
L KAVANST A F+RV GSE + KYLG+GP++VR++FR+A + +PSI+FIDE+D++ TKR
Sbjct: 222 LVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKR 281
Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360
+DA +G +RE+QR ++ELL Q+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEFP
Sbjct: 282 FDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 341
Query: 361 -LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMK 419
L D + RR IF S+M+LA + +L+ ++ D SGA I AI EAGL A+R+ R
Sbjct: 342 SLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYV 401
Query: 420 VTHTDF 425
+ +D
Sbjct: 402 ILQSDL 407
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 327 bits (837), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 154/311 (49%), Positives = 221/311 (71%)
Query: 115 VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVD 174
VG + +++ + +V +Y V + ++ L+ + + + + +L+++ D
Sbjct: 72 VGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKAD 131
Query: 175 PMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEP 234
P+VS+M VEK P +Y +GGL QI+EIKE +ELP+ HPEL+E +GI PKGVILYG P
Sbjct: 132 PLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPP 191
Query: 235 GTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEID 294
GTGKTLLA+AVA+ T F+RV G+EL+QKY+G+G ++VRELF +A + +PSI+F+DEID
Sbjct: 192 GTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251
Query: 295 AVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRID 354
++G+ R + GG+ E+QRTMLELLNQLDGF++ ++K+I+ATNR++ LDPALLRPGRID
Sbjct: 252 SIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRID 311
Query: 355 RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 414
RKIEFP P + R I +IH+ +M L +NL + + SGAD+K +CTEAG+ ALR
Sbjct: 312 RKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALR 371
Query: 415 ERRMKVTHTDF 425
ERR+ VT DF
Sbjct: 372 ERRIHVTQEDF 382
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 323 bits (829), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 158/356 (44%), Positives = 234/356 (65%), Gaps = 26/356 (7%)
Query: 96 EKAEEDRSKVDDLRGSPMSVGNLEELIDENH--------------------------AIV 129
EK ++++ K+ + R P V N+ E++D N A+V
Sbjct: 60 EKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVV 119
Query: 130 SSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLES 189
+S ++ ++ VD D+L+P + ++ ++ L E D V M+V++ P E+
Sbjct: 120 KTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTET 179
Query: 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 249
Y+D+GGLD QI+E+ EA+ LP+ + ++D+GI+ PKG ++YG PGTGKTLLA+A A T
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 250 SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGER 309
+ATFL++ +L+Q Y+G+G KLVR+ F +A + +P+I+FIDE+DA+GTKR+D+ G+R
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR 299
Query: 310 EIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRR 369
E+QRTMLELLNQLDGF S VKV+ ATNR++ LDPALLR GR+DRKIEFPLP +R +
Sbjct: 300 EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQ 359
Query: 370 IFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
I QIH+ +MT DD+N +E + DEF+GA +KA+ EAG++ALR + V H DF
Sbjct: 360 ILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDF 415
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 314 bits (804), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 150/246 (60%), Positives = 197/246 (80%)
Query: 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKT 239
M+V++ P Y DIGGL+ Q+QEI+E VELPL HPEL+E +GI+PPKG++LYG PGTGKT
Sbjct: 6 MEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 65
Query: 240 LLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTK 299
LLAKAVA T+ATF+RVVGSEL++K++G+G LV+++F++A + +PSI+FIDEIDA+ K
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAK 125
Query: 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEF 359
R DA +GG+RE+QRT+++LL ++DGFD+RGDVK+I ATNR + LDPA+LRPGR DR IE
Sbjct: 126 RTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEV 185
Query: 360 PLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMK 419
P PD K R I +IHT +M LA+DVNLEE + GA++KAICTEAG+ A+RE R
Sbjct: 186 PAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDY 245
Query: 420 VTHTDF 425
VT DF
Sbjct: 246 VTMDDF 251
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 300 bits (769), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 144/290 (49%), Positives = 202/290 (69%)
Query: 136 EYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGG 195
++ VG+ V +E G + + ++ L +DP V++M VE+ P +Y+D+GG
Sbjct: 154 KFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGG 213
Query: 196 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255
QI++++E VELPL PE + +GI PPKG++LYG PGTGKTL A+AVAN T ATF+R
Sbjct: 214 CKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273
Query: 256 VVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM 315
V+GSEL+QKY+G+G ++VRELF +A I+F DEIDAVG R+D +GG+ E+QRTM
Sbjct: 274 VIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTM 333
Query: 316 LELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375
LEL+ QLDGFD RG++KV+ ATNR +LDPALLRPGRIDRK+EF LPD++ R IF+IH+
Sbjct: 334 LELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393
Query: 376 SRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
M++ + E +GA+++++CTEAG+ A+R RR T DF
Sbjct: 394 KSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDF 443
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 295 bits (756), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 233/365 (63%), Gaps = 6/365 (1%)
Query: 61 LSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 120
L++ K +LL+ R D L + + + E+L +K E D + L+ +G + +
Sbjct: 57 LNQFKRKLLEHRRYDDQLKQRRQNIRDLEKLY---DKTEND---IKALQSIGQLIGEVMK 110
Query: 121 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 180
+ E IV +S GP Y VG+ + VD+ +L+ G + + L+++ +L E DP+V M
Sbjct: 111 ELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNM 170
Query: 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240
+ ++ IGGL QI+E++E +ELPL +PE+++ +GIKPPKGV+LYG PGTGKTL
Sbjct: 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTL 230
Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
LAKAVA + A F+ S ++ KY+G+ +++RE+F A + P I+F+DE+DA+G +R
Sbjct: 231 LAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRR 290
Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360
+ + +REIQRT++ELL Q+DGFD+ G K+I+ATNR ++LDPALLRPGR+DRK+E P
Sbjct: 291 FSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
Query: 361 LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 420
LP+ R IF+IHT+++ + + E V D F+GADI+ TEAG A+R+ R +
Sbjct: 351 LPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHI 410
Query: 421 THTDF 425
D
Sbjct: 411 NPDDL 415
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 3/227 (1%)
Query: 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 249
Y DIGG Q+ +IKE VELPL HP L++ IG+KPP+G++LYG PGTGKTL+A+AVAN T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 250 SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGER 309
A F + G E++ K G+ +R+ F A+ +P+I+FIDE+DA+ KR H ER
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 310 EIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRR 369
R + +LL +DG R V V+ ATNR S+DPAL R GR DR+++ +PD R
Sbjct: 323 ---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 370 IFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 416
I QIHT M LADDV+LE+ GAD+ A+C+EA L A+R++
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 214 bits (546), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 3/227 (1%)
Query: 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 249
Y DIGG Q+ +IKE VELPL HP L++ IG+KPP+G++LYG PGTGKTL+A+AVAN T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 250 SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGER 309
A F + G E++ K G+ +R+ F A+ +P+I+FIDE+DA+ KR H ER
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 310 EIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRR 369
R + +LL +DG R V V+ ATNR S+DPAL R GR DR+++ +PD R
Sbjct: 323 ---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 370 IFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 416
I QIHT M LADDV+LE+ GAD+ A+C+EA L A+R++
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 214 bits (546), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 3/227 (1%)
Query: 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 249
Y DIGG Q+ +IKE VELPL HP L++ IG+KPP+G++LYG PGTGKTL+A+AVAN T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 250 SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGER 309
A F + G E++ K G+ +R+ F A+ +P+I+FIDE+DA+ KR H ER
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 310 EIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRR 369
R + +LL +DG R V V+ ATNR S+DPAL R GR DR+++ +PD R
Sbjct: 323 ---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 370 IFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 416
I QIHT M LADDV+LE+ GAD+ A+C+EA L A+R++
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 214 bits (545), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 3/227 (1%)
Query: 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 249
Y DIGG Q+ +IKE VELPL HP L++ IG+KPP+G++LYG PGTGKTL+A+AVAN T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 250 SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGER 309
A F + G E++ K G+ +R+ F A+ +P+I+FIDE+DA+ KR H ER
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 310 EIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRR 369
R + +LL +DG R V V+ ATNR S+DPAL R GR DR+++ +PD R
Sbjct: 323 ---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 370 IFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 416
I QIHT M LADDV+LE+ GAD+ A+C+EA L A+R++
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 140/231 (60%)
Query: 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 241
V + P ++ DIGGL+ +E++E V+ P+ HP+ + G+ P KGV+ YG PG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 242 AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301
AKA+AN A F+ + G EL+ + G+ VRE+F A +P ++F DE+D++ R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 302 DAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 361
G R + ++L ++DG ++ +V +I ATNR + +DPA+LRPGR+D+ I PL
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 362 PDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 412
PD K+R I + + + +A DV+LE + FSGAD+ IC A LA
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 214 bits (545), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 148/227 (65%), Gaps = 3/227 (1%)
Query: 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 249
Y D+GG Q+ +IKE VELPL HP L++ IG+KPP+G++LYG PGTGKTL+A+AVAN T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 250 SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGER 309
A F + G E++ K G+ +R+ F A+ +P+I+FIDE+DA+ KR H ER
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 310 EIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRR 369
R + +LL +DG R V V+ ATNR S+DPAL R GR DR+++ +PD R
Sbjct: 323 ---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 370 IFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 416
I QIHT M LADDV+LE+ GAD+ A+C+EA L A+R++
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 140/231 (60%)
Query: 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 241
V + P ++ DIGGL+ +E++E V+ P+ HP+ + G+ P KGV+ YG PG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 242 AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301
AKA+AN A F+ + G EL+ + G+ VRE+F A +P ++F DE+D++ R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 302 DAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 361
G R + ++L ++DG ++ +V +I ATNR + +DPA+LRPGR+D+ I PL
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 362 PDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 412
PD K+R I + + + +A DV+LE + FSGAD+ IC A LA
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 214 bits (544), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 148/227 (65%), Gaps = 3/227 (1%)
Query: 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 249
Y D+GG Q+ +IKE VELPL HP L++ IG+KPP+G++LYG PGTGKTL+A+AVAN T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 250 SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGER 309
A F + G E++ K G+ +R+ F A+ +P+I+FIDE+DA+ KR H ER
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 310 EIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRR 369
R + +LL +DG R V V+ ATNR S+DPAL R GR DR+++ +PD R
Sbjct: 323 ---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 370 IFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 416
I QIHT M LADDV+LE+ GAD+ A+C+EA L A+R++
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 152/237 (64%), Gaps = 1/237 (0%)
Query: 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 248
++ D+GG + I+E+KE VE L P + IG + PKG++L G PGTGKTLLA+AVA
Sbjct: 14 TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 249 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGE 308
+ F + GS+ ++ ++G G VR+LF A +P IVFIDEIDAVG R GG
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 309 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR 368
E ++T+ +LL ++DGFDS+ + V+ ATNR + LDPALLRPGR D+KI PD+ R+
Sbjct: 133 DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRK 192
Query: 369 RIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
+I +IHT LA+DVNLE F GAD++ + EA LLA RE R K+T DF
Sbjct: 193 KILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 151/237 (63%), Gaps = 1/237 (0%)
Query: 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 248
++ D+GG + I+E+KE VE L P + IG + PKG++L G PGTG TLLA+AVA
Sbjct: 14 TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Query: 249 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGE 308
+ F + GS+ ++ ++G G VR+LF A +P IVFIDEIDAVG R GG
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 309 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR 368
E ++T+ +LL ++DGFDS+ + V+ ATNR + LDPALLRPGR D+KI PD+ R+
Sbjct: 133 DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRK 192
Query: 369 RIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
+I +IHT LA+DVNLE F GAD++ + EA LLA RE R K+T DF
Sbjct: 193 KILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 145/237 (61%), Gaps = 1/237 (0%)
Query: 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 248
++AD+ G D +E+ E VE L P ++ +G K PKGV++ G PGTGKTLLAKA+A
Sbjct: 10 TFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 249 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGE 308
F + GS+ ++ ++G G VR++F A +P I+FIDEIDAVG +R GG
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 128
Query: 309 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR 368
E ++T+ ++L ++DGF+ + VI ATNR + LDPALLRPGR DR++ LPD++ R
Sbjct: 129 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 188
Query: 369 RIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
+I ++H R+ LA D++ FSGAD+ + EA L A R + V+ +F
Sbjct: 189 QILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEF 245
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 143/239 (59%), Gaps = 7/239 (2%)
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P + D+ G + +E+ E V+ L +PE Y ++G K PKGV+L G PGTGKTLLAKAV
Sbjct: 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
A F + GS I+ ++G G VR+LF A +PSI+FIDEIDA+G R A
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR--AAG 122
Query: 306 G---GEREIQRTMLELLNQLDGFDS-RGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 361
G G E ++T+ +LL ++DGF S V V+ ATNR E LDPAL+RPGR DR++
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 362 PDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 420
PD R I ++H + LA+DVNL+E +GAD+ I EA LLA R + +V
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEV 241
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 140/231 (60%)
Query: 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 241
V + P ++ DIGGL+ +E++E V+ P+ HP+ + G+ P KGV+ YG PG GKTLL
Sbjct: 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65
Query: 242 AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301
AKA+AN A F+ + G EL+ + G+ VRE+F A +P ++F DE+D++ R
Sbjct: 66 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 125
Query: 302 DAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 361
G R + ++L ++DG ++ +V +I ATNR + +DPA+LRPGR+D+ I PL
Sbjct: 126 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 185
Query: 362 PDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 412
PD K+R I + + + +A DV+LE + FSGAD+ IC A LA
Sbjct: 186 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 174 bits (442), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 153/251 (60%), Gaps = 3/251 (1%)
Query: 175 PMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEP 234
P+ SV+ +AP ++ D+ G + +E+KE VE L +P + ++G + PKGV+L G P
Sbjct: 2 PLGSVLT--EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPP 58
Query: 235 GTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEID 294
G GKT LA+AVA F+ GS+ ++ ++G G VR+LF A +P IVFIDEID
Sbjct: 59 GVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 118
Query: 295 AVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRID 354
AVG KR GG E ++T+ +LL ++DGF+ + V+ ATNR + LDPALLRPGR D
Sbjct: 119 AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFD 178
Query: 355 RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 414
R+I PD+K R +I +IH LA+DV+L F GAD++ + EA LLA R
Sbjct: 179 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 238
Query: 415 ERRMKVTHTDF 425
E R K+T D
Sbjct: 239 EGRRKITMKDL 249
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 148/242 (61%), Gaps = 1/242 (0%)
Query: 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 243
+AP ++ D+ G + +E+KE VE L +P + ++G + PKGV+L G PG GKT LA+
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91
Query: 244 AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 303
AVA F+ GS+ ++ ++G G VR+LF A +P IVFIDEIDAVG KR
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 304 HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD 363
GG E ++T+ +LL ++DGF+ + V+ ATNR + LDPALLRPGR DR+I PD
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
Query: 364 IKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHT 423
+K R +I +IH LA+DV+L F GAD++ + EA LLA RE R K+T
Sbjct: 212 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 271
Query: 424 DF 425
D
Sbjct: 272 DL 273
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 148/242 (61%), Gaps = 1/242 (0%)
Query: 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 243
+AP ++ D+ G + +E+KE VE L +P + ++G + PKGV+L G PG GKT LA+
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91
Query: 244 AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 303
AVA F+ GS+ ++ ++G G VR+LF A +P IVFIDEIDAVG KR
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 304 HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD 363
GG E ++T+ +LL ++DGF+ + V+ ATNR + LDPALLRPGR DR+I PD
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
Query: 364 IKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHT 423
+K R +I +IH LA+DV+L F GAD++ + EA LLA RE R K+T
Sbjct: 212 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 271
Query: 424 DF 425
D
Sbjct: 272 DL 273
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 148/242 (61%), Gaps = 1/242 (0%)
Query: 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 243
+AP ++ D+ G + +E+KE VE L +P + ++G + PKGV+L G PG GKT LA+
Sbjct: 24 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 82
Query: 244 AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 303
AVA F+ GS+ ++ ++G G VR+LF A +P IVFIDEIDAVG KR
Sbjct: 83 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 142
Query: 304 HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD 363
GG E ++T+ +LL ++DGF+ + V+ ATNR + LDPALLRPGR DR+I PD
Sbjct: 143 VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 202
Query: 364 IKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHT 423
+K R +I +IH LA+DV+L F GAD++ + EA LLA RE R K+T
Sbjct: 203 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 262
Query: 424 DF 425
D
Sbjct: 263 DL 264
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 150/256 (58%), Gaps = 19/256 (7%)
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P ++ADIG L+ +E+ A+ P+ +P+ ++ +G+ P GV+L G PG GKTLLAKAV
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
AN + F+ V G EL+ Y+G+ + VR++F+ A + +P ++F DE+DA+ +R D +
Sbjct: 65 ANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET 124
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
G R + +LL ++DG ++R V ++ ATNR + +DPA+LRPGR+D+ + LP
Sbjct: 125 GAS---VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
Query: 366 TRRRIFQIHTSRMT---LADDVNLEEFV--MTKDEFSGADIKAICTEAGLLALRER---- 416
R I + T T L DVNLE + D ++GAD+ A+ EA + ALR+
Sbjct: 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241
Query: 417 -------RMKVTHTDF 425
+KV+H F
Sbjct: 242 KSGNEKGELKVSHKHF 257
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 134/240 (55%), Gaps = 4/240 (1%)
Query: 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 248
S+ D+ G+ E++E V+ L PE + +G K PKG +L G PG GKTLLAKAVA
Sbjct: 4 SFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 249 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG-G 307
FL + G+E ++ G G VR LF+ A +P IV+IDEIDAVG KR SG
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFS 122
Query: 308 EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR 367
E ++T+ +LL ++DG + V V+ +TNR + LD AL+RPGR+DR + LP ++ R
Sbjct: 123 NTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182
Query: 368 RRIFQIHTSRMTLADDVNL--EEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
R IF+ H + L + FSGADI IC EA L A RE V +F
Sbjct: 183 REIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNF 242
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 139/237 (58%), Gaps = 11/237 (4%)
Query: 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIK-PPKGVILYGEPGTGKTL 240
++ P ++ DI G++ IKE V P+ P+++ G++ PPKG++L+G PGTGKTL
Sbjct: 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIF--TGLRGPPKGILLFGPPGTGKTL 132
Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
+ K +A+ + ATF + S L K++G+G K+VR LF VA P+++FIDEID++ ++R
Sbjct: 133 IGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR 192
Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIE 358
D R I+ E L QLDG + + ++++ ATNR + +D A R R+ +++
Sbjct: 193 GDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLY 247
Query: 359 FPLPDIKTRRRI-FQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 414
PLP+ R++I + + + +E+ V D FSGAD+ +C EA L +R
Sbjct: 248 IPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 148/260 (56%), Gaps = 27/260 (10%)
Query: 173 VDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYG 232
+DP +++ + P + D+ GL+ + +KEAV LP+ P L++ KP G++LYG
Sbjct: 2 IDPFTAILS--EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYG 58
Query: 233 EPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDE 292
PGTGK+ LAKAVA ++TF V S+L+ K++G+ KLV++LF +A + PSI+FID+
Sbjct: 59 PPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQ 118
Query: 293 IDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGR 352
+DA+ R + S R I+ +L +N + G DS+G V V+ ATN LD A+ R R
Sbjct: 119 VDALTGTRGEGESEASRRIKTELLVQMNGV-GNDSQG-VLVLGATNIPWQLDSAIRR--R 174
Query: 353 IDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE----------FSGADIK 402
+R+I PLPD+ R +F+I+ V V+TK++ +SG+DI
Sbjct: 175 FERRIYIPLPDLAARTTMFEIN---------VGDTPCVLTKEDYRTLGAMTEGYSGSDIA 225
Query: 403 AICTEAGLLALRERRMKVTH 422
+ +A + +R + TH
Sbjct: 226 VVVKDALMQPIR-KIQSATH 244
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 142/241 (58%), Gaps = 13/241 (5%)
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P + D+ GL+ + +KEAV LP+ P L++ KP G++LYG PGTGK+ LAKAV
Sbjct: 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAV 104
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
A ++TF V S+L+ K++G+ KLV++LF +A + PSI+FID++DA+ R + S
Sbjct: 105 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGES 164
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
R I+ +L +N + G DS+G V V+ ATN LD A+ R R +R+I PLPD+
Sbjct: 165 EASRRIKTELLVQMNGV-GNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 220
Query: 366 TRRRIFQIHT----SRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 421
R +F+I+ S +T D L MT+ +SG+DI + +A + +R + T
Sbjct: 221 ARTTMFEINVGDTPSVLTKEDYRTLG--AMTEG-YSGSDIAVVVKDALMQPIR-KIQSAT 276
Query: 422 H 422
H
Sbjct: 277 H 277
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 139/240 (57%), Gaps = 24/240 (10%)
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P + D+ GL+ + +KEAV LP+ P L++ KP G++LYG PGTGK+ LAKAV
Sbjct: 22 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAV 80
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
A ++TF V S+L+ K++G+ KLV++LF +A + PSI+FIDE+DA+ R + S
Sbjct: 81 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGES 140
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
R I+ +L +N + G DS+G V V+ ATN LD A+ R R +R+I PLPD+
Sbjct: 141 EASRRIKTELLVQMNGV-GNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 196
Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDE----------FSGADIKAICTEAGLLALRE 415
R +F+I+ V V+TK++ +SG+DI + +A + +R+
Sbjct: 197 ARTTMFEIN---------VGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 141/247 (57%), Gaps = 25/247 (10%)
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P + D+ GL+ + +KEAV LP+ P L++ KP G++LYG PGTGK+ LAKAV
Sbjct: 31 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAV 89
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
A ++TF V S+L+ K++G+ KLV++LF +A + PSI+FID++DA+ R + S
Sbjct: 90 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGES 149
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
R I+ +L +N + G DS+G V V+ ATN LD A+ R R +R+I PLPD+
Sbjct: 150 EASRRIKTELLVQMNGV-GNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 205
Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDE----------FSGADIKAICTEAGLLALRE 415
R +F+I+ V V+TK++ +SG+DI + +A + +R
Sbjct: 206 ARTTMFEIN---------VGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR- 255
Query: 416 RRMKVTH 422
+ TH
Sbjct: 256 KIQSATH 262
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 140/259 (54%), Gaps = 26/259 (10%)
Query: 165 VVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKP 224
+V L+ DE+ VE + DI G D Q ++E V LP PEL+ G++
Sbjct: 3 LVQLILDEI--------VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELF--TGLRA 52
Query: 225 P-KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDL 283
P KG++L+G PG GKTLLA+AVA SATFL + + L KY+GDG KLVR LF VA +
Sbjct: 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 112
Query: 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD---VKVILATNRI 340
PSI+FIDE+D++ ++R + R R E L + DG D + V+ ATNR
Sbjct: 113 QPSIIFIDEVDSLLSERSSSEHEASR---RLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169
Query: 341 ESLDPALLRPGRIDRKIEFPLPDIKTR----RRIFQIHTSRMTLADDVNLEEFVMTKDEF 396
+ LD A LR R +++ LPD +TR R+ Q S + D L D +
Sbjct: 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGY 224
Query: 397 SGADIKAICTEAGLLALRE 415
SG+D+ A+ +A L +RE
Sbjct: 225 SGSDLTALAKDAALEPIRE 243
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 135/230 (58%), Gaps = 11/230 (4%)
Query: 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP-KGVILYGEPGTGKTLLAKAVANS 248
+ DI G D Q ++E V LP PEL+ G++ P +G++L+G PG GKT+LAKAVA
Sbjct: 114 FDDIAGQDLAKQALQEIVILPSLRPELF--TGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171
Query: 249 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGE 308
++ATF + + L KY+G+G KLVR LF VA +L PSI+FID++D++ +R +
Sbjct: 172 SNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDAS 231
Query: 309 REIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKT 366
R ++ E L + DG S GD +V++ ATNR + LD A+LR R +++ LP+ +T
Sbjct: 232 RRLK---TEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEET 286
Query: 367 RRRIFQIHTSRM-TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415
R + + + + L + D +SG+D+ A+ +A L +RE
Sbjct: 287 RLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 138/241 (57%), Gaps = 12/241 (4%)
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP-KGVILYGEPGTGKTLLAKA 244
P ++D+ GL+ + +KEAV LP+ P L+ G + P +G++L+G PGTGK+ LAKA
Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKA 186
Query: 245 VAN-STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 303
VA + ++TF + S+L+ K+LG+ KLV+ LF++A + PSI+FIDEID++ R +
Sbjct: 187 VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN 246
Query: 304 HSGGEREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLP 362
S R I+ E L Q+ G D + V+ ATN LD A+ R R +++I PLP
Sbjct: 247 ESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 301
Query: 363 DIKTRRRIFQIHT-SRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 421
+ R +F++H S + + +E D +SGADI I +A + +R + T
Sbjct: 302 EAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR-KVQSAT 360
Query: 422 H 422
H
Sbjct: 361 H 361
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 139/235 (59%), Gaps = 13/235 (5%)
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP-KGVILYGEPGTGKTLLAKA 244
P ++D+ GL+ + +KEAV LP+ P L+ G + P +G++L+G PGTGK+ LAKA
Sbjct: 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKA 64
Query: 245 VAN-STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 303
VA + ++TF + S+L+ K+LG+ KLV+ LF++A + PSI+FIDEID++ R +
Sbjct: 65 VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN 124
Query: 304 HSGGEREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLP 362
S R I+ E L Q+ G D + V+ ATN LD A+ R R +++I PLP
Sbjct: 125 ESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 179
Query: 363 DIKTRRRIFQIH--TSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415
+ R +F++H T++ +L + + E D +SGADI I +A + +R+
Sbjct: 180 EPHARAAMFKLHLGTTQNSLT-EADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH 422
D + +R IF TS+M L+++V+LE++V D+ SGADI +IC E+G+LA+RE R V
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLA 61
Query: 423 TDF 425
DF
Sbjct: 62 KDF 64
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 362 PDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 421
P+ + R I +IH+ +M L +NL + SGA++K +CTEAG+ ALRERR+ VT
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 422 HTDF 425
DF
Sbjct: 71 QEDF 74
>pdb|2WG6|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
Length = 109
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 90 RLKPQEEKAEEDRSK-------VDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGIL 142
R+K E+K EE SK V LR +P+ VG + +++++ +V SS GP++ V
Sbjct: 8 RMKQLEDKVEELLSKNYHLENEVARLRSAPLLVGVVSDILEDGRVVVKSSTGPKFVVNTS 67
Query: 143 SFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEK 184
++++++L+PG + ++ + L++V +L DPMV +VE+
Sbjct: 68 QYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEE 109
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 360 PLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMK 419
P P+ + R I +IH+ + L +NL + SGA++K +CTEAG ALRERR+
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 420 VTHTDF 425
VT DF
Sbjct: 61 VTQEDF 66
>pdb|2WG5|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
Length = 109
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 90 RLKPQEEKAEEDRSK-------VDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGIL 142
R+K E+K EE SK V LR P+ VG + +++++ +V SS GP++ V
Sbjct: 8 RMKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTS 67
Query: 143 SFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEK 184
++++++L+PG + ++ + L++V +L DPMV +VE+
Sbjct: 68 QYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEE 109
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 361 LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 420
LPD++ R IF+IH+ M++ + E +GA+++++CTEAG+ A+R RR
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 66
Query: 421 THTDF 425
T DF
Sbjct: 67 TEKDF 71
>pdb|3H43|A Chain A, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|B Chain B, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|C Chain C, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|D Chain D, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|E Chain E, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|F Chain F, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|G Chain G, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|H Chain H, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|I Chain I, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|J Chain J, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|K Chain K, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|L Chain L, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
Length = 85
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
R ++D R P+ VG + + + E +V SS GP + V + FV+ D L PG + ++ +
Sbjct: 8 RRELDRXRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQ 67
Query: 162 VLSVVGLL 169
L+VV +L
Sbjct: 68 TLTVVDVL 75
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 367 RRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
RR IF S+M+LA + +L+ ++ D SGA I AI EAGL A+R+ R + +D
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDL 61
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH 422
D++ R IF+IH+ ++ + E +GA+++++CTEAG A+R RR T
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATE 61
Query: 423 TDF 425
DF
Sbjct: 62 KDF 64
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 27/156 (17%)
Query: 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGDGPKLVRELFRVADDL 283
PK +++ G G GKT +A+ +A +A F++V ++ + Y+G +E+ + DL
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG------KEVDSIIRDL 103
Query: 284 SPS------------IVFIDEIDAVGTK-RYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330
+ S IVFIDEID + K Y +QR +L L+ G
Sbjct: 104 TDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 163
Query: 331 VK----VILATNRIESLDPALLRP---GRIDRKIEF 359
VK + +A+ + P+ L P GR+ ++E
Sbjct: 164 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 199
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 26/197 (13%)
Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
IK P + ++G G GK+ + V + + EL G+ KL+R+ +R A
Sbjct: 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 92
Query: 282 DL----SPSIVFIDEIDA-----VGTKRYDAHSGGEREIQRTMLELLN-----QLDGFDS 327
++ + +FI+++DA GT +Y ++ + + T++ + + QL G +
Sbjct: 93 EIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADNPTNVQLPGMYN 149
Query: 328 RGD---VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV 384
+ + V +I+ N +L L+R GR+++ P TR + T + D+V
Sbjct: 150 KQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCTG-IFRTDNV 203
Query: 385 NLEEFVMTKDEFSGADI 401
E+ V D F G I
Sbjct: 204 PAEDVVKIVDNFPGQSI 220
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGDGPKLVRELFRVADDL 283
PK +++ G G GKT +A+ +A +A F++V ++ + Y+G +E+ + DL
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG------KEVDSIIRDL 103
Query: 284 SPSIVFIDEIDAVGTKRYDAHSGGEREI 311
+ + V + + A+ RY A E I
Sbjct: 104 TDAAVKMVRVQAIEKNRYRAEELAEERI 131
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGDGPKLVRELFRVADDL 283
PK +++ G G GKT +A+ +A +A F++V ++ + Y+G +E+ + DL
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG------KEVDSIIRDL 102
Query: 284 SPSIVFIDEIDAVGTKRYDAHSGGEREI 311
+ + V + + A+ RY A E I
Sbjct: 103 TDAAVKMVRVQAIEKNRYRAEELAEERI 130
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGDGPKLVRELFRVADDL 283
PK +++ G G GKT +A+ +A +A F++V ++ + Y+G +E+ + DL
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG------KEVDSIIRDL 109
Query: 284 SPSIVFIDEIDAVGTKRYDAHSGGEREI 311
+ + V + + A+ RY A E I
Sbjct: 110 TDAAVKMVRVQAIEKNRYRAEELAEERI 137
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 24/149 (16%)
Query: 224 PPKGVILYGEPGTGKTLLAKAVAN-------STSATFLRVVGSELIQKYLGDGPKLVREL 276
P + G PGTGKT +A +A + V +L+ +Y+G +E+
Sbjct: 59 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEV 118
Query: 277 FRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336
+ A ++FIDE Y ER+ + +E+L Q+ ++R D+ VILA
Sbjct: 119 LKRA---MGGVLFIDE------AYYLYRPDNERDYGQEAIEILLQVME-NNRDDLVVILA 168
Query: 337 --TNRIESLDPALLRPG---RIDRKIEFP 360
+R+E+ + PG RI IEFP
Sbjct: 169 GYADRMENFFQS--NPGFRSRIAHHIEFP 195
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 24/149 (16%)
Query: 224 PPKGVILYGEPGTGKTLLAKAVAN-------STSATFLRVVGSELIQKYLGDGPKLVREL 276
P + G PGTGKT +A +A + V +L+ +Y+G +E+
Sbjct: 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEV 125
Query: 277 FRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336
+ A ++FIDE Y ER+ + +E+L Q+ ++R D+ VILA
Sbjct: 126 LKRA---MGGVLFIDE------AYYLYRPDNERDYGQEAIEILLQVME-NNRDDLVVILA 175
Query: 337 --TNRIESLDPALLRPG---RIDRKIEFP 360
+R+E+ + PG RI IEFP
Sbjct: 176 GYADRMENFFQS--NPGFRSRIAHHIEFP 202
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 228 VILYGEPGTGKTLLAKAVANSTSATFLRV-VG-----SEL---IQKYLGDGPKLVRELFR 278
+ L G PG GKT LAK++A S F+R+ +G SE+ + Y+G P + + +
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 279 VADDLSPSIVFIDEIDAVGT 298
A L+P + +DEID + +
Sbjct: 171 KAGKLNP-VFLLDEIDKMSS 189
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA----DDL 283
+IL+G PGTGKT LA+ +A +A R+ + G K +RE A +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 284 SPSIVFIDEIDAVGTKRYDA 303
+I+F+DE+ + DA
Sbjct: 106 RRTILFVDEVHRFNKSQQDA 125
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 232 GEPGTGKTLLAKAVAN-------STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLS 284
G PGTGKT +A A + V +L+ +Y+G +E+ + A
Sbjct: 74 GNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---X 130
Query: 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA--TNRIES 342
++FIDE Y ER+ + +E+L Q+ ++R D+ VILA +R E+
Sbjct: 131 GGVLFIDE------AYYLYRPDNERDYGQEAIEILLQVXE-NNRDDLVVILAGYADRXEN 183
Query: 343 LDPALLRPG---RIDRKIEFP 360
+ PG RI IEFP
Sbjct: 184 FFQS--NPGFRSRIAHHIEFP 202
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 187 LESYADIGGLDAQI---QEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 243
L A +GG+D I +E++ A+++ + + +L GE G GKT +A+
Sbjct: 176 LNQLARVGGIDPLIGREKELERAIQV----------LCRRRKNNPLLVGESGVGKTAIAE 225
Query: 244 AVAN-----------STSATFLRVVGSELI-QKYLGDGPKLVRELFRVADDLSPSIVFID 291
+A + + +GS L KY GD K + L + + + SI+FID
Sbjct: 226 GLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285
Query: 292 EIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337
EI + A SGG+ + + LL S G ++VI +T
Sbjct: 286 EIHTIIGA--GAASGGQVDAANLIKPLL-------SSGKIRVIGST 322
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 209 LPLTHPELYEDIGIKP--PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266
LP E ++ I K P ++ PGTGKT +AKA+ + +A + V GS+ ++
Sbjct: 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV 89
Query: 267 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL---NQLD 323
GP L + D ++ IDE D G H E + ++ N +D
Sbjct: 90 -RGP-LTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147
Query: 324 G 324
G
Sbjct: 148 G 148
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK-YLG-DGPKLVRELFRVAD-DLS 284
++L G G+GKTLLA+ +A F + L + Y+G D ++++L + D D+
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 285 PS---IVFIDEIDAVGTK 299
+ IV+ID+ID + K
Sbjct: 114 KAQRGIVYIDQIDKISRK 131
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK-YLG-DGPKLVRELFRVAD-DLS 284
++L G G+GKTLLA+ +A F + L + Y+G D ++++L + D D+
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 285 PS---IVFIDEIDAVGTK 299
+ IV+ID+ID + K
Sbjct: 114 KAQRGIVYIDQIDKISRK 131
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADD 282
+P + ++L+G PG GKT LA +A+ LRV I+K GD ++ D
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GDLAAILANSLEEGD- 92
Query: 283 LSPSIVFIDEI 293
I+FIDEI
Sbjct: 93 ----ILFIDEI 99
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADD 282
+P + ++L+G PG GKT LA +A+ LRV I+K GD ++ D
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GDLAAILANSLEEGD- 92
Query: 283 LSPSIVFIDEI 293
I+FIDEI
Sbjct: 93 ----ILFIDEI 99
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADD 282
+P + ++L+G PG GKT LA +A+ LRV I+K GD ++ D
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GDLAAILANSLEEGD- 92
Query: 283 LSPSIVFIDEI 293
I+FIDEI
Sbjct: 93 ----ILFIDEI 99
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 226 KGVILYGEPGTGKTLLAKAVAN--STSATFLRVVGSEL 261
+ V+L G PGTGKT LA A+A + F +VGSE+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 226 KGVILYGEPGTGKTLLAKAVAN--STSATFLRVVGSEL 261
+ V+L G PGTGKT LA A+A + F VGSE+
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEV 115
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 18/83 (21%)
Query: 227 GVILYGEPGTGKTLLAKAVANS-------TSATFLRVVGSELIQKYLG-DGPKLVRELFR 278
++L G G+GKTL+A+ +A + AT L G Y+G D ++ L +
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAG------YVGEDVENILTRLLQ 127
Query: 279 VAD----DLSPSIVFIDEIDAVG 297
+D IVFIDEID +
Sbjct: 128 ASDWNVQKAQKGIVFIDEIDKIS 150
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGDGPKLVRELFRVADDL 283
PK +++ G G GKT +A+ +A +A F++V ++ + Y+G +E+ + DL
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG------KEVDSIIRDL 103
Query: 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML 316
+ S + + + R A E I +L
Sbjct: 104 TDSAMKLVRQQEIAKNRARAEDVAEERILDALL 136
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVREL 276
K KG+ L+G G GKT L A+AN + R V S ++ Y+ P+L REL
Sbjct: 52 KKMKGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIV--YV---PELFREL 97
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 211 LTHPELYEDIGIKPPKGVILYGEPGTGKTL-LAKAVANST 249
+ H +++ D+ + +G+IL G PG+GKT+ + A+ NS+
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRNSS 1073
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 211 LTHPELYEDIGIKPPKGVILYGEPGTGKTL-LAKAVANST 249
+ H +++ D+ + +G+IL G PG+GKT+ + A+ NS+
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRNSS 1292
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 228 VILYGEPGTGKTLLAKAVA 246
V+L GEPGTGK++L +A+A
Sbjct: 63 VLLIGEPGTGKSMLGQAMA 81
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 226 KGVILYGEPGTGKTLLAKAVANSTS--ATFLRVVGSELI 262
+ V++ G+PGTGKT +A +A + F + GSE+
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSI 287
V+L G PG GKT LA +A+ G L+++ GD ++ L R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSLER------GDV 105
Query: 288 VFIDEI 293
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSI 287
V+L G PG GKT LA +A+ G L+++ GD ++ L R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSLER------GDV 105
Query: 288 VFIDEI 293
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSI 287
V+L G PG GKT LA +A+ G L+++ GD ++ L R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSLER------GDV 105
Query: 288 VFIDEI 293
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSI 287
V+L G PG GKT LA +A+ G L+++ GD ++ L R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSLER------GDV 105
Query: 288 VFIDEI 293
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGDGPKLVRELFRVADDL 283
PK ++ G G GKT +A+ +A +A F++V ++ + Y+G K V + R D
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG---KEVDSIIRDLTDS 106
Query: 284 SPSIVFIDEI 293
+ +V EI
Sbjct: 107 AXKLVRQQEI 116
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 45/177 (25%)
Query: 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLV----------- 273
P + +YG GTGKT + K V + FL I D P V
Sbjct: 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVK 104
Query: 274 --------RELFR-----VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320
EL+R V D S ++ +DEIDA K D +L L+
Sbjct: 105 VPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-----------DILYKLS 153
Query: 321 QLDGFDSRGDVKVILATNRIES---LDPALLRPGRIDRKIEFP------LPDIKTRR 368
+++ ++ + I TN ++ LDP ++ + +I FP L DI T+R
Sbjct: 154 RINSEVNKSKISFIGITNDVKFVDLLDPR-VKSSLSEEEIIFPPYNAEELEDILTKR 209
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSI 287
V+L G PG GKT LA +A+ G L+++ GD ++ L R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSLER------GDV 105
Query: 288 VFIDEI 293
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 226 KGVILYGEPGTGKTLLAKAVANSTS--ATFLRVVGSELI 262
+ V++ G+PGTGKT +A A + F + GSE+
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIF 124
>pdb|3E1S|A Chain A, Structure Of An N-Terminal Truncation Of Deinococcus
Radiodurans Recd2
pdb|3GP8|A Chain A, Crystal Structure Of The Binary Complex Of Recd2 With Dna
pdb|3GPL|A Chain A, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
pdb|3GPL|B Chain B, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
Length = 574
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 26/91 (28%)
Query: 228 VILYGEPGTGKTLLAKAVANSTSATFLRV------------VG------SELIQKYLGDG 269
V+L G PGTGK+ KAVA+ + L V +G + + + LG G
Sbjct: 207 VVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYG 266
Query: 270 PKLVRELFRVADDLSPS---IVFIDEIDAVG 297
P+ R + L P+ ++ +DE+ +G
Sbjct: 267 PQGFRH-----NHLEPAPYDLLIVDEVSMMG 292
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSI 287
V+L G PG G+T LA +A+ G L+++ GD ++ L R +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSLER------GDV 105
Query: 288 VFIDEI 293
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 227 GVILYGEPGTGKTLLAKAVANSTSATFLRV 256
++L G PG GKT L K +A+ + ++ V
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 227 GVILYGEPGTGKTLLAKAVANSTSATFLRV 256
++L G PG GKT L K +A+ + ++ V
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 39/173 (22%)
Query: 171 DEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELP----------LTHPELYEDI 220
D + + V++ + Y L +++++ +LP L H ++Y
Sbjct: 307 DRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVK 366
Query: 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA 280
+ ++ G PGTGKT+ TSAT + + + G+GP LV
Sbjct: 367 TVLQRPLSLIQGPPGTGKTV--------TSATIVYHLARQ------GNGPVLV------- 405
Query: 281 DDLSPSIVFIDE----IDAVGTK--RYDAHSGGEREIQRTMLELLNQLDGFDS 327
+PS + +D+ I G K R A S + + L L NQ+ DS
Sbjct: 406 --CAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDS 456
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 14/78 (17%)
Query: 229 ILYGEPGTGKTLLAKAVA----NSTSATFL---RVVGSELIQKYLG---DGPKLVRELFR 278
+L GEPG GKT +A+ +A N+ L RV+ ++ KY G D K V + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 279 VADDLSPSIVFID-EIDA 295
A ++ I+FID IDA
Sbjct: 265 QAGNI---ILFIDAAIDA 279
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 14/78 (17%)
Query: 229 ILYGEPGTGKTLLAKAVA----NSTSATFL---RVVGSELIQKYLG---DGPKLVRELFR 278
+L GEPG GKT +A+ +A N+ L RV+ ++ KY G D K V + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 279 VADDLSPSIVFID-EIDA 295
A ++ I+FID IDA
Sbjct: 265 QAGNI---ILFIDAAIDA 279
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 39/173 (22%)
Query: 171 DEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELP----------LTHPELYEDI 220
D + + V++ + Y L +++++ +LP L H ++Y
Sbjct: 130 DRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVK 189
Query: 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA 280
+ ++ G PGTGKT+ TSAT + + + G+GP LV
Sbjct: 190 TVLQRPLSLIQGPPGTGKTV--------TSATIVYHLARQ------GNGPVLV------- 228
Query: 281 DDLSPSIVFIDE----IDAVGTK--RYDAHSGGEREIQRTMLELLNQLDGFDS 327
+PS + +D+ I G K R A S + + L L NQ+ DS
Sbjct: 229 --CAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDS 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,172,686
Number of Sequences: 62578
Number of extensions: 493408
Number of successful extensions: 1548
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1432
Number of HSP's gapped (non-prelim): 112
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)